Query 017495
Match_columns 370
No_of_seqs 179 out of 2056
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 09:04:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 1E-44 2.3E-49 325.1 29.0 336 17-370 4-342 (342)
2 TIGR02716 C20_methyl_CrtF C-20 100.0 3.7E-38 8.1E-43 291.8 26.1 289 32-357 3-305 (306)
3 PF00891 Methyltransf_2: O-met 100.0 7.1E-39 1.5E-43 286.9 19.7 236 108-347 3-241 (241)
4 COG2226 UbiE Methylase involve 99.8 7E-18 1.5E-22 147.4 15.5 155 205-364 49-230 (238)
5 PLN02233 ubiquinone biosynthes 99.8 2.3E-17 4.9E-22 149.0 17.9 155 205-364 71-254 (261)
6 PF01209 Ubie_methyltran: ubiE 99.8 2.1E-19 4.5E-24 158.7 4.5 162 205-370 45-233 (233)
7 TIGR00740 methyltransferase, p 99.8 4.8E-18 1E-22 151.9 10.8 155 206-365 52-234 (239)
8 PTZ00098 phosphoethanolamine N 99.7 5.7E-17 1.2E-21 146.5 16.1 156 195-360 41-204 (263)
9 TIGR02752 MenG_heptapren 2-hep 99.7 1.1E-16 2.4E-21 142.4 14.6 168 197-370 36-231 (231)
10 PRK15451 tRNA cmo(5)U34 methyl 99.7 6.3E-17 1.4E-21 145.2 12.4 151 206-357 55-229 (247)
11 PRK14103 trans-aconitate 2-met 99.7 2.8E-16 6E-21 141.9 15.4 158 195-356 18-182 (255)
12 PLN02244 tocopherol O-methyltr 99.7 1.1E-15 2.3E-20 143.3 17.7 151 206-360 117-280 (340)
13 PLN02490 MPBQ/MSBQ methyltrans 99.7 2.4E-15 5.2E-20 139.1 16.9 139 207-360 113-258 (340)
14 PRK00216 ubiE ubiquinone/menaq 99.7 7.1E-15 1.5E-19 131.3 18.2 168 197-370 42-238 (239)
15 KOG1540 Ubiquinone biosynthesi 99.7 1.9E-15 4.1E-20 129.7 13.4 146 205-355 98-278 (296)
16 PLN02336 phosphoethanolamine N 99.6 5.3E-15 1.1E-19 145.4 15.4 151 196-359 256-415 (475)
17 PF13489 Methyltransf_23: Meth 99.6 3E-15 6.5E-20 125.2 11.0 136 205-355 20-160 (161)
18 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 3E-14 6.6E-19 125.8 17.9 165 197-370 30-223 (223)
19 PRK15068 tRNA mo(5)U34 methylt 99.6 1.6E-14 3.4E-19 134.1 14.8 144 207-359 122-275 (322)
20 TIGR00452 methyltransferase, p 99.6 2.6E-14 5.7E-19 131.2 16.0 153 197-359 112-274 (314)
21 smart00828 PKS_MT Methyltransf 99.6 1.2E-14 2.5E-19 128.8 13.2 136 209-360 1-146 (224)
22 PRK11207 tellurite resistance 99.6 2E-14 4.4E-19 124.4 14.3 139 197-356 21-168 (197)
23 COG4106 Tam Trans-aconitate me 99.6 1.1E-14 2.3E-19 122.1 11.5 170 195-370 19-203 (257)
24 PLN02396 hexaprenyldihydroxybe 99.6 4.1E-15 8.9E-20 137.1 9.7 145 207-359 131-290 (322)
25 COG2230 Cfa Cyclopropane fatty 99.6 2.3E-14 5E-19 127.6 13.9 156 195-359 61-224 (283)
26 PF12847 Methyltransf_18: Meth 99.6 3.6E-15 7.8E-20 117.0 7.7 98 207-304 1-111 (112)
27 PRK08317 hypothetical protein; 99.6 6E-14 1.3E-18 125.3 16.5 157 197-359 10-177 (241)
28 PRK11873 arsM arsenite S-adeno 99.6 3.7E-14 8E-19 129.3 15.0 146 205-359 75-231 (272)
29 PF02353 CMAS: Mycolic acid cy 99.6 2.4E-14 5.3E-19 129.3 13.0 160 195-359 51-218 (273)
30 PRK11036 putative S-adenosyl-L 99.6 3.6E-14 7.8E-19 128.1 12.8 156 197-359 36-208 (255)
31 PRK01683 trans-aconitate 2-met 99.6 1.2E-13 2.6E-18 125.0 16.2 106 195-303 20-129 (258)
32 PRK06922 hypothetical protein; 99.5 5.2E-14 1.1E-18 137.9 13.0 142 167-309 377-542 (677)
33 PRK05785 hypothetical protein; 99.5 2.7E-13 5.8E-18 119.8 15.9 156 207-370 51-224 (226)
34 PRK06202 hypothetical protein; 99.5 4.9E-13 1.1E-17 119.0 16.7 145 205-359 58-223 (232)
35 PF13847 Methyltransf_31: Meth 99.5 9.6E-15 2.1E-19 121.2 5.3 139 206-350 2-152 (152)
36 smart00138 MeTrc Methyltransfe 99.5 5.1E-13 1.1E-17 120.7 16.6 101 205-305 97-243 (264)
37 TIGR00477 tehB tellurite resis 99.5 2.3E-13 5E-18 117.6 13.8 140 197-357 21-168 (195)
38 TIGR02072 BioC biotin biosynth 99.5 5.7E-13 1.2E-17 118.9 15.5 137 207-358 34-176 (240)
39 PF08241 Methyltransf_11: Meth 99.5 5.9E-14 1.3E-18 106.3 6.6 88 212-302 1-95 (95)
40 TIGR02021 BchM-ChlM magnesium 99.5 9.8E-13 2.1E-17 116.0 15.2 157 195-361 42-209 (219)
41 PRK10258 biotin biosynthesis p 99.5 2E-12 4.4E-17 116.4 16.6 145 195-353 31-182 (251)
42 PF06080 DUF938: Protein of un 99.5 3E-12 6.5E-17 108.7 16.4 158 210-370 28-204 (204)
43 PRK04266 fibrillarin; Provisio 99.5 3.6E-12 7.9E-17 112.1 16.7 143 201-369 67-224 (226)
44 PRK08287 cobalt-precorrin-6Y C 99.5 1.1E-12 2.4E-17 112.8 13.2 125 200-359 25-157 (187)
45 PF08242 Methyltransf_12: Meth 99.5 3E-14 6.4E-19 109.3 3.0 87 212-300 1-99 (99)
46 TIGR03587 Pse_Me-ase pseudamin 99.5 1.1E-12 2.3E-17 113.9 12.7 103 205-309 41-147 (204)
47 KOG1270 Methyltransferases [Co 99.4 2.5E-13 5.5E-18 117.6 8.0 143 208-359 90-250 (282)
48 PRK11705 cyclopropane fatty ac 99.4 2.8E-12 6.1E-17 121.7 15.6 155 195-360 156-314 (383)
49 PLN02336 phosphoethanolamine N 99.4 1.7E-12 3.7E-17 127.7 14.5 144 195-355 26-179 (475)
50 KOG4300 Predicted methyltransf 99.4 1.4E-12 2.9E-17 108.8 11.3 177 180-364 50-238 (252)
51 PRK12335 tellurite resistance 99.4 2.3E-12 5.1E-17 118.2 13.7 132 206-357 119-258 (287)
52 KOG2361 Predicted methyltransf 99.4 8.3E-13 1.8E-17 112.8 9.4 146 209-357 73-236 (264)
53 TIGR00537 hemK_rel_arch HemK-r 99.4 5.4E-12 1.2E-16 107.6 14.3 133 207-370 19-177 (179)
54 PRK07580 Mg-protoporphyrin IX 99.4 7.4E-12 1.6E-16 111.2 14.6 144 205-361 61-217 (230)
55 PF13649 Methyltransf_25: Meth 99.4 2.9E-13 6.3E-18 104.2 4.7 88 211-298 1-101 (101)
56 COG2227 UbiG 2-polyprenyl-3-me 99.4 2.6E-13 5.7E-18 116.7 4.8 143 207-359 59-216 (243)
57 TIGR03438 probable methyltrans 99.4 4.7E-12 1E-16 116.8 12.2 97 207-303 63-176 (301)
58 PRK15001 SAM-dependent 23S rib 99.3 2.5E-11 5.4E-16 114.1 15.1 106 198-304 220-340 (378)
59 PLN03075 nicotianamine synthas 99.3 6.4E-12 1.4E-16 113.4 10.6 98 206-304 122-233 (296)
60 PF05401 NodS: Nodulation prot 99.3 3.3E-12 7.2E-17 107.0 7.5 135 201-359 38-180 (201)
61 PRK05134 bifunctional 3-demeth 99.3 1.4E-11 3E-16 109.8 11.9 146 205-358 46-205 (233)
62 PLN02585 magnesium protoporphy 99.3 3.1E-11 6.7E-16 111.1 14.5 149 207-369 144-313 (315)
63 TIGR03840 TMPT_Se_Te thiopurin 99.3 1.1E-10 2.4E-15 101.8 16.5 132 206-358 33-187 (213)
64 PF08003 Methyltransf_9: Prote 99.3 2.6E-11 5.7E-16 108.2 11.4 141 207-359 115-268 (315)
65 TIGR00138 gidB 16S rRNA methyl 99.3 2.8E-11 6E-16 103.1 11.1 91 208-304 43-142 (181)
66 PRK09489 rsmC 16S ribosomal RN 99.3 1.3E-10 2.8E-15 108.5 16.0 107 198-305 188-304 (342)
67 PF05891 Methyltransf_PK: AdoM 99.2 1E-11 2.2E-16 105.9 6.0 137 207-358 55-201 (218)
68 PRK13255 thiopurine S-methyltr 99.2 2.7E-10 5.9E-15 99.8 15.0 133 205-358 35-190 (218)
69 PRK00107 gidB 16S rRNA methylt 99.2 7.9E-11 1.7E-15 100.5 11.1 93 206-304 44-145 (187)
70 PF03848 TehB: Tellurite resis 99.2 3.9E-11 8.4E-16 101.8 8.8 109 197-308 21-137 (192)
71 TIGR01983 UbiG ubiquinone bios 99.2 4.1E-11 9E-16 106.0 9.3 142 207-358 45-203 (224)
72 PTZ00146 fibrillarin; Provisio 99.2 7.7E-10 1.7E-14 99.6 16.8 139 205-367 130-283 (293)
73 TIGR02469 CbiT precorrin-6Y C5 99.2 2.1E-10 4.5E-15 91.4 11.6 100 198-303 11-121 (124)
74 TIGR03534 RF_mod_PrmC protein- 99.2 2.8E-10 6.1E-15 102.4 13.4 124 207-360 87-243 (251)
75 PLN02232 ubiquinone biosynthes 99.2 7.2E-11 1.6E-15 98.7 8.3 132 235-368 1-158 (160)
76 PF07021 MetW: Methionine bios 99.2 5.6E-10 1.2E-14 93.6 12.8 143 206-361 12-170 (193)
77 TIGR02081 metW methionine bios 99.2 4.2E-10 9E-15 97.3 12.5 146 206-359 12-168 (194)
78 PRK00121 trmB tRNA (guanine-N( 99.2 8.8E-11 1.9E-15 102.0 8.0 98 207-304 40-156 (202)
79 PRK11188 rrmJ 23S rRNA methylt 99.2 8.3E-10 1.8E-14 96.3 13.7 107 196-306 40-167 (209)
80 PRK14968 putative methyltransf 99.1 1.7E-09 3.6E-14 92.8 15.0 134 206-370 22-188 (188)
81 PF05175 MTS: Methyltransferas 99.1 1.7E-10 3.8E-15 97.4 8.5 99 207-305 31-141 (170)
82 PRK09328 N5-glutamine S-adenos 99.1 1.3E-09 2.8E-14 99.5 14.7 135 205-369 106-274 (275)
83 PF05148 Methyltransf_8: Hypot 99.1 2E-09 4.3E-14 91.1 13.6 159 171-370 32-197 (219)
84 PF12147 Methyltransf_20: Puta 99.1 5.4E-09 1.2E-13 92.6 16.6 155 206-370 134-311 (311)
85 COG2242 CobL Precorrin-6B meth 99.1 2E-09 4.4E-14 89.7 13.1 101 199-306 27-137 (187)
86 TIGR00536 hemK_fam HemK family 99.1 3.9E-09 8.4E-14 96.7 14.9 94 209-302 116-242 (284)
87 COG2813 RsmC 16S RNA G1207 met 99.1 7.1E-09 1.5E-13 92.9 15.8 108 197-305 149-267 (300)
88 TIGR00091 tRNA (guanine-N(7)-) 99.1 3.5E-10 7.7E-15 97.6 7.2 98 207-305 16-133 (194)
89 TIGR03533 L3_gln_methyl protei 99.1 3.9E-09 8.5E-14 96.5 14.3 96 207-302 121-249 (284)
90 PRK13944 protein-L-isoaspartat 99.0 1.3E-09 2.8E-14 94.9 10.5 99 197-304 63-173 (205)
91 PRK11088 rrmA 23S rRNA methylt 99.0 1.1E-09 2.5E-14 99.6 10.2 90 207-305 85-182 (272)
92 KOG3045 Predicted RNA methylas 99.0 7.7E-09 1.7E-13 89.4 14.2 158 170-370 139-303 (325)
93 PRK00517 prmA ribosomal protei 99.0 3.1E-09 6.7E-14 95.5 12.3 118 206-363 118-243 (250)
94 PRK00377 cbiT cobalt-precorrin 99.0 6.2E-09 1.3E-13 90.2 13.5 97 200-302 34-143 (198)
95 PRK13942 protein-L-isoaspartat 99.0 3.2E-09 6.9E-14 93.0 10.7 100 196-304 66-176 (212)
96 PRK07402 precorrin-6B methylas 99.0 4.4E-09 9.5E-14 91.0 10.9 101 198-305 32-143 (196)
97 PRK14966 unknown domain/N5-glu 99.0 1.4E-08 3.1E-13 95.8 15.0 125 207-361 251-408 (423)
98 PHA03411 putative methyltransf 99.0 7.1E-09 1.5E-13 92.4 12.2 124 207-353 64-209 (279)
99 TIGR00080 pimt protein-L-isoas 99.0 4.9E-09 1.1E-13 92.1 11.0 98 197-303 68-176 (215)
100 PRK04457 spermidine synthase; 99.0 1.9E-09 4.2E-14 97.3 8.2 99 206-305 65-178 (262)
101 COG4123 Predicted O-methyltran 98.9 1.3E-08 2.7E-13 89.5 12.3 125 205-359 42-195 (248)
102 PRK14121 tRNA (guanine-N(7)-)- 98.9 5.3E-09 1.1E-13 98.1 10.3 107 197-305 113-236 (390)
103 PRK14967 putative methyltransf 98.9 2.5E-08 5.4E-13 88.1 14.1 102 205-307 34-162 (223)
104 PRK11805 N5-glutamine S-adenos 98.9 7.5E-09 1.6E-13 95.5 10.9 94 209-302 135-261 (307)
105 TIGR00406 prmA ribosomal prote 98.9 1.1E-08 2.5E-13 93.7 11.3 93 207-305 159-260 (288)
106 PRK01544 bifunctional N5-gluta 98.9 2.2E-08 4.8E-13 98.6 13.9 125 208-362 139-297 (506)
107 TIGR00438 rrmJ cell division p 98.9 1.6E-08 3.5E-13 86.9 11.4 104 197-304 22-146 (188)
108 TIGR03704 PrmC_rel_meth putati 98.9 4.5E-08 9.8E-13 87.9 14.7 122 207-358 86-240 (251)
109 PRK13256 thiopurine S-methyltr 98.9 3.6E-08 7.7E-13 86.2 13.4 101 205-307 41-166 (226)
110 cd02440 AdoMet_MTases S-adenos 98.9 1.2E-08 2.6E-13 77.6 9.4 92 210-303 1-103 (107)
111 TIGR01177 conserved hypothetic 98.9 3E-08 6.4E-13 92.9 13.0 120 205-359 180-316 (329)
112 KOG2899 Predicted methyltransf 98.9 1.2E-08 2.7E-13 87.4 8.8 140 205-355 56-254 (288)
113 PRK10611 chemotaxis methyltran 98.8 1.3E-07 2.9E-12 85.7 15.3 98 207-304 115-262 (287)
114 PF05724 TPMT: Thiopurine S-me 98.8 4.9E-08 1.1E-12 85.4 11.8 132 205-358 35-190 (218)
115 PF01739 CheR: CheR methyltran 98.8 1.3E-08 2.8E-13 87.4 7.8 99 207-305 31-176 (196)
116 PF04672 Methyltransf_19: S-ad 98.8 4E-08 8.7E-13 87.1 11.0 141 207-355 68-233 (267)
117 PF13659 Methyltransf_26: Meth 98.8 7.6E-09 1.7E-13 81.5 5.5 96 209-305 2-116 (117)
118 PRK00811 spermidine synthase; 98.8 1.9E-08 4.1E-13 92.0 8.7 98 206-303 75-190 (283)
119 KOG1271 Methyltransferases [Ge 98.8 2.6E-08 5.5E-13 81.8 8.5 122 209-360 69-207 (227)
120 PRK00312 pcm protein-L-isoaspa 98.8 5.1E-08 1.1E-12 85.5 10.8 98 197-305 69-176 (212)
121 COG4976 Predicted methyltransf 98.8 1.5E-08 3.3E-13 86.2 6.1 146 195-359 114-266 (287)
122 COG2264 PrmA Ribosomal protein 98.7 1.3E-07 2.7E-12 85.5 11.7 118 206-359 161-289 (300)
123 COG2890 HemK Methylase of poly 98.7 3E-07 6.4E-12 83.7 14.1 123 210-362 113-267 (280)
124 COG1352 CheR Methylase of chem 98.7 7.5E-07 1.6E-11 79.8 16.4 99 207-305 96-242 (268)
125 COG2519 GCD14 tRNA(1-methylade 98.7 1.5E-07 3.2E-12 82.2 11.2 105 196-308 84-199 (256)
126 PF08100 Dimerisation: Dimeris 98.7 2.3E-08 5.1E-13 65.3 4.5 51 34-90 1-51 (51)
127 PF05219 DREV: DREV methyltran 98.7 4.5E-07 9.8E-12 79.6 13.5 141 207-360 94-242 (265)
128 PRK01581 speE spermidine synth 98.7 7.6E-08 1.6E-12 89.2 8.9 98 206-303 149-267 (374)
129 PLN02366 spermidine synthase 98.7 9.8E-08 2.1E-12 87.8 9.5 98 206-303 90-205 (308)
130 PRK03612 spermidine synthase; 98.7 2E-07 4.4E-12 92.3 11.9 98 206-304 296-415 (521)
131 TIGR00417 speE spermidine synt 98.6 9.7E-08 2.1E-12 86.8 8.2 98 206-303 71-185 (270)
132 PF06325 PrmA: Ribosomal prote 98.6 1.2E-07 2.7E-12 86.3 8.4 136 183-360 140-285 (295)
133 PRK13943 protein-L-isoaspartat 98.6 1.7E-07 3.7E-12 86.7 9.4 99 197-304 71-180 (322)
134 COG2518 Pcm Protein-L-isoaspar 98.6 4.6E-07 9.9E-12 77.4 10.3 100 195-305 61-170 (209)
135 PLN02781 Probable caffeoyl-CoA 98.5 5.8E-07 1.2E-11 79.8 10.5 96 205-305 66-179 (234)
136 KOG3010 Methyltransferase [Gen 98.5 2.9E-07 6.2E-12 79.3 8.0 92 207-303 33-136 (261)
137 smart00650 rADc Ribosomal RNA 98.5 3E-07 6.5E-12 77.6 7.8 102 197-304 4-113 (169)
138 PF01135 PCMT: Protein-L-isoas 98.5 1.4E-07 3.1E-12 81.9 5.3 102 195-305 61-173 (209)
139 PRK10901 16S rRNA methyltransf 98.5 7.5E-07 1.6E-11 86.4 10.7 107 200-307 238-375 (427)
140 PRK14902 16S rRNA methyltransf 98.5 7E-07 1.5E-11 87.1 10.2 103 205-307 248-382 (444)
141 PLN02672 methionine S-methyltr 98.5 1.3E-06 2.8E-11 91.8 12.5 122 208-359 119-304 (1082)
142 PRK14904 16S rRNA methyltransf 98.5 8.6E-07 1.9E-11 86.4 10.4 104 205-308 248-381 (445)
143 TIGR00563 rsmB ribosomal RNA s 98.5 7.3E-07 1.6E-11 86.5 9.6 110 198-308 230-372 (426)
144 PF02390 Methyltransf_4: Putat 98.5 3.2E-07 7E-12 79.0 6.3 91 210-305 20-134 (195)
145 PF08704 GCD14: tRNA methyltra 98.4 5.7E-07 1.2E-11 79.8 7.4 126 197-359 31-172 (247)
146 KOG1541 Predicted protein carb 98.4 5.9E-07 1.3E-11 76.2 7.0 96 207-304 50-160 (270)
147 PRK14901 16S rRNA methyltransf 98.4 1.2E-06 2.6E-11 85.2 9.7 103 205-307 250-387 (434)
148 PF11968 DUF3321: Putative met 98.4 5.6E-06 1.2E-10 70.8 12.2 120 208-360 52-183 (219)
149 PF08123 DOT1: Histone methyla 98.4 1.2E-06 2.6E-11 75.8 7.8 112 195-310 31-164 (205)
150 PRK14903 16S rRNA methyltransf 98.3 2.2E-06 4.7E-11 83.0 9.7 104 205-308 235-370 (431)
151 PF10294 Methyltransf_16: Puta 98.3 3E-06 6.5E-11 71.7 9.4 101 205-307 43-159 (173)
152 PHA03412 putative methyltransf 98.3 2.8E-06 6.1E-11 74.2 9.3 92 208-299 50-158 (241)
153 PF03291 Pox_MCEL: mRNA cappin 98.3 1.8E-06 3.9E-11 80.2 8.3 98 207-305 62-187 (331)
154 TIGR00446 nop2p NOL1/NOP2/sun 98.3 3.6E-06 7.9E-11 76.2 10.0 104 205-308 69-203 (264)
155 PLN02476 O-methyltransferase 98.3 4.4E-06 9.6E-11 75.3 9.2 97 205-306 116-230 (278)
156 COG3963 Phospholipid N-methylt 98.3 1.2E-05 2.6E-10 65.5 10.5 109 197-306 39-158 (194)
157 PF01596 Methyltransf_3: O-met 98.3 1.2E-06 2.7E-11 75.7 5.2 96 206-306 44-157 (205)
158 COG4122 Predicted O-methyltran 98.2 4.9E-06 1.1E-10 72.1 8.6 99 205-308 57-170 (219)
159 COG0220 Predicted S-adenosylme 98.2 2.9E-06 6.2E-11 74.4 6.5 92 209-305 50-165 (227)
160 COG0421 SpeE Spermidine syntha 98.2 5.8E-06 1.3E-10 74.9 8.0 97 207-303 76-189 (282)
161 TIGR00755 ksgA dimethyladenosi 98.2 8.6E-06 1.9E-10 73.4 9.1 91 195-292 18-116 (253)
162 PLN02823 spermine synthase 98.2 6.4E-06 1.4E-10 76.7 8.3 97 206-303 102-219 (336)
163 KOG1975 mRNA cap methyltransfe 98.2 7.7E-06 1.7E-10 73.4 8.2 103 197-303 109-236 (389)
164 PF09243 Rsm22: Mitochondrial 98.2 9.8E-06 2.1E-10 73.7 9.1 113 194-309 21-144 (274)
165 PRK14896 ksgA 16S ribosomal RN 98.1 1.5E-05 3.2E-10 72.0 9.3 83 195-281 18-106 (258)
166 PRK00274 ksgA 16S ribosomal RN 98.1 1.1E-05 2.3E-10 73.5 8.3 82 195-280 31-119 (272)
167 PF05185 PRMT5: PRMT5 arginine 98.1 5.3E-06 1.2E-10 80.2 6.7 126 169-301 152-294 (448)
168 PRK11727 23S rRNA mA1618 methy 98.1 1.6E-05 3.4E-10 73.5 9.0 144 207-360 114-294 (321)
169 KOG1500 Protein arginine N-met 98.1 1.9E-05 4.1E-10 71.2 8.7 103 197-301 168-279 (517)
170 KOG1331 Predicted methyltransf 98.1 1E-05 2.2E-10 71.8 7.0 106 195-307 36-146 (293)
171 PRK10909 rsmD 16S rRNA m(2)G96 98.1 1.9E-05 4.2E-10 68.0 8.4 95 207-305 53-160 (199)
172 PLN02589 caffeoyl-CoA O-methyl 98.0 1.3E-05 2.8E-10 71.4 7.3 96 205-306 77-191 (247)
173 PRK00536 speE spermidine synth 98.0 2.6E-05 5.6E-10 69.9 8.8 88 206-303 71-170 (262)
174 PRK13168 rumA 23S rRNA m(5)U19 98.0 1.6E-05 3.5E-10 77.5 8.2 100 195-303 286-399 (443)
175 TIGR00478 tly hemolysin TlyA f 98.0 0.00013 2.8E-09 64.2 12.6 138 195-360 63-219 (228)
176 TIGR03439 methyl_EasF probable 98.0 3.6E-05 7.9E-10 71.0 9.5 105 196-303 68-196 (319)
177 PTZ00338 dimethyladenosine tra 98.0 3.1E-05 6.7E-10 71.0 8.7 89 195-287 25-122 (294)
178 PRK11783 rlmL 23S rRNA m(2)G24 98.0 2.5E-05 5.4E-10 80.4 8.5 96 207-303 538-655 (702)
179 PRK04148 hypothetical protein; 97.9 0.00016 3.4E-09 57.7 10.3 99 197-306 7-111 (134)
180 PF01564 Spermine_synth: Sperm 97.9 1.2E-05 2.5E-10 72.0 4.3 99 206-304 75-191 (246)
181 PF03141 Methyltransf_29: Puta 97.9 9.3E-06 2E-10 77.5 3.5 98 207-308 117-223 (506)
182 PRK15128 23S rRNA m(5)C1962 me 97.8 6.1E-05 1.3E-09 72.0 8.2 97 207-304 220-339 (396)
183 PRK03522 rumB 23S rRNA methylu 97.8 6.6E-05 1.4E-09 69.9 8.2 89 207-302 173-272 (315)
184 PRK01544 bifunctional N5-gluta 97.8 3.1E-05 6.8E-10 76.5 6.3 93 207-304 347-462 (506)
185 KOG2904 Predicted methyltransf 97.8 0.00022 4.8E-09 62.9 10.3 99 206-304 147-285 (328)
186 KOG3191 Predicted N6-DNA-methy 97.8 0.0006 1.3E-08 56.5 12.1 133 208-369 44-207 (209)
187 KOG2940 Predicted methyltransf 97.8 0.0002 4.3E-09 61.5 9.4 142 207-358 72-227 (325)
188 COG0293 FtsJ 23S rRNA methylas 97.8 0.00029 6.3E-09 60.3 10.3 115 189-307 27-162 (205)
189 KOG1499 Protein arginine N-met 97.7 4.5E-05 9.7E-10 69.8 5.5 94 207-301 60-164 (346)
190 TIGR00479 rumA 23S rRNA (uraci 97.7 9.9E-05 2.1E-09 71.9 8.1 97 197-302 283-394 (431)
191 KOG1661 Protein-L-isoaspartate 97.7 5.5E-05 1.2E-09 64.0 5.3 91 205-303 80-192 (237)
192 COG0030 KsgA Dimethyladenosine 97.7 0.00036 7.8E-09 62.1 9.9 95 194-289 18-118 (259)
193 COG2263 Predicted RNA methylas 97.6 0.00012 2.5E-09 61.3 5.9 65 207-272 45-115 (198)
194 COG2521 Predicted archaeal met 97.6 0.00086 1.9E-08 57.9 10.8 129 205-361 132-280 (287)
195 TIGR00095 RNA methyltransferas 97.6 0.00028 6.1E-09 60.5 7.6 94 207-305 49-159 (189)
196 PF01728 FtsJ: FtsJ-like methy 97.6 0.00022 4.8E-09 60.7 6.9 107 195-305 9-140 (181)
197 COG5459 Predicted rRNA methyla 97.6 6.9E-05 1.5E-09 68.1 3.8 112 197-309 104-230 (484)
198 PF04816 DUF633: Family of unk 97.5 0.00042 9.1E-09 60.0 8.5 111 211-356 1-122 (205)
199 COG4798 Predicted methyltransf 97.5 0.0009 2E-08 56.1 9.8 137 204-355 45-202 (238)
200 TIGR02085 meth_trns_rumB 23S r 97.5 0.00026 5.6E-09 67.5 7.0 90 207-303 233-333 (374)
201 PF02527 GidB: rRNA small subu 97.5 0.00016 3.4E-09 61.5 4.8 89 210-304 51-148 (184)
202 PF07942 N2227: N2227-like pro 97.4 0.003 6.5E-08 56.8 12.8 134 207-358 56-242 (270)
203 KOG0820 Ribosomal RNA adenine 97.4 0.00037 8E-09 61.5 6.7 75 194-271 46-129 (315)
204 COG4301 Uncharacterized conser 97.4 0.0014 3.1E-08 57.0 9.9 99 207-305 78-194 (321)
205 PRK00050 16S rRNA m(4)C1402 me 97.4 0.00033 7.1E-09 64.0 6.2 66 195-261 8-79 (296)
206 TIGR00027 mthyl_TIGR00027 meth 97.2 0.0032 7E-08 56.8 10.8 147 207-356 81-248 (260)
207 COG0357 GidB Predicted S-adeno 97.2 0.0011 2.3E-08 57.5 7.0 120 208-360 68-197 (215)
208 PRK11760 putative 23S rRNA C24 97.2 0.0033 7.2E-08 58.0 10.1 95 206-308 210-308 (357)
209 KOG3201 Uncharacterized conser 97.2 0.00016 3.5E-09 58.6 1.5 97 208-306 30-142 (201)
210 PF00398 RrnaAD: Ribosomal RNA 97.2 0.0013 2.9E-08 59.5 7.4 96 194-296 18-123 (262)
211 KOG3115 Methyltransferase-like 97.1 0.00062 1.3E-08 57.4 4.5 100 208-307 61-186 (249)
212 PRK04338 N(2),N(2)-dimethylgua 97.1 0.0015 3.1E-08 62.3 7.0 90 208-303 58-157 (382)
213 COG4262 Predicted spermidine s 97.1 0.0016 3.4E-08 59.9 6.7 93 206-304 288-407 (508)
214 PLN02668 indole-3-acetate carb 97.0 0.035 7.6E-07 52.6 15.8 103 207-309 63-242 (386)
215 KOG4589 Cell division protein 97.0 0.0047 1E-07 51.5 8.7 106 197-306 59-186 (232)
216 KOG3987 Uncharacterized conser 97.0 0.00025 5.5E-09 59.8 1.3 138 207-360 112-262 (288)
217 COG0500 SmtA SAM-dependent met 97.0 0.0067 1.4E-07 49.4 9.5 95 211-309 52-160 (257)
218 PRK11933 yebU rRNA (cytosine-C 96.9 0.0054 1.2E-07 59.9 9.7 103 205-307 111-245 (470)
219 PF01170 UPF0020: Putative RNA 96.8 0.0023 4.9E-08 54.4 5.7 105 197-302 19-149 (179)
220 COG2384 Predicted SAM-dependen 96.8 0.045 9.7E-07 47.2 13.2 114 207-355 16-140 (226)
221 PF09339 HTH_IclR: IclR helix- 96.8 0.00055 1.2E-08 45.3 1.4 45 42-97 6-50 (52)
222 COG4076 Predicted RNA methylas 96.8 0.0021 4.5E-08 53.6 5.0 96 209-306 34-137 (252)
223 KOG2798 Putative trehalase [Ca 96.8 0.022 4.7E-07 51.6 11.7 150 195-359 135-338 (369)
224 PF01022 HTH_5: Bacterial regu 96.8 0.00092 2E-08 43.2 2.3 43 41-96 4-46 (47)
225 COG3315 O-Methyltransferase in 96.8 0.0056 1.2E-07 56.2 7.9 148 207-357 92-263 (297)
226 PF02475 Met_10: Met-10+ like- 96.7 0.0019 4.1E-08 55.6 4.3 91 205-301 99-199 (200)
227 PF13679 Methyltransf_32: Meth 96.7 0.0057 1.2E-07 49.8 6.9 96 205-307 23-134 (141)
228 PF12840 HTH_20: Helix-turn-he 96.7 0.0014 3.1E-08 44.9 2.8 54 33-98 4-57 (61)
229 KOG1269 SAM-dependent methyltr 96.7 0.002 4.4E-08 60.6 4.4 101 207-310 110-221 (364)
230 COG1889 NOP1 Fibrillarin-like 96.7 0.082 1.8E-06 45.0 13.4 140 205-368 74-227 (231)
231 COG3897 Predicted methyltransf 96.6 0.017 3.7E-07 48.7 9.0 104 203-309 75-184 (218)
232 COG4627 Uncharacterized protei 96.6 0.0017 3.6E-08 52.4 2.9 39 267-305 49-87 (185)
233 COG1189 Predicted rRNA methyla 96.5 0.071 1.5E-06 46.6 12.5 151 195-360 67-226 (245)
234 KOG3420 Predicted RNA methylas 96.5 0.0053 1.1E-07 49.1 5.1 65 207-273 48-122 (185)
235 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.5 0.004 8.6E-08 55.6 5.0 91 254-358 138-239 (256)
236 PF03059 NAS: Nicotianamine sy 96.5 0.008 1.7E-07 54.2 6.8 96 207-303 120-229 (276)
237 KOG1709 Guanidinoacetate methy 96.5 0.035 7.6E-07 47.6 10.1 119 187-309 83-211 (271)
238 PRK10141 DNA-binding transcrip 96.5 0.004 8.6E-08 48.6 4.2 68 31-115 8-75 (117)
239 KOG2918 Carboxymethyl transfer 96.4 0.059 1.3E-06 48.8 11.6 143 205-359 85-278 (335)
240 PF01269 Fibrillarin: Fibrilla 96.4 0.012 2.6E-07 50.9 6.9 140 205-368 71-225 (229)
241 KOG2915 tRNA(1-methyladenosine 96.3 0.06 1.3E-06 47.9 11.0 105 195-307 94-213 (314)
242 PHA00738 putative HTH transcri 96.3 0.006 1.3E-07 46.1 4.1 61 40-117 13-73 (108)
243 PF13601 HTH_34: Winged helix 96.3 0.0045 9.7E-08 45.0 3.3 67 40-119 1-67 (80)
244 smart00550 Zalpha Z-DNA-bindin 96.3 0.0095 2.1E-07 41.8 4.9 60 40-115 7-66 (68)
245 PF13578 Methyltransf_24: Meth 96.2 0.0019 4.1E-08 49.7 1.2 90 212-304 1-105 (106)
246 PF02384 N6_Mtase: N-6 DNA Met 96.2 0.0089 1.9E-07 55.5 5.8 101 205-305 44-184 (311)
247 TIGR01444 fkbM_fam methyltrans 96.2 0.0055 1.2E-07 49.8 3.8 52 210-261 1-59 (143)
248 KOG1663 O-methyltransferase [S 96.2 0.021 4.6E-07 49.5 7.3 98 206-308 72-187 (237)
249 TIGR02143 trmA_only tRNA (urac 96.1 0.0066 1.4E-07 57.4 4.5 51 209-261 199-256 (353)
250 PF11312 DUF3115: Protein of u 96.1 0.026 5.6E-07 51.4 8.0 100 208-307 87-245 (315)
251 PF09445 Methyltransf_15: RNA 96.1 0.0025 5.5E-08 52.8 1.4 61 209-271 1-75 (163)
252 PF04989 CmcI: Cephalosporin h 96.1 0.024 5.3E-07 48.7 7.3 99 207-308 32-151 (206)
253 PF07091 FmrO: Ribosomal RNA m 96.0 0.0089 1.9E-07 52.7 4.4 100 206-307 104-211 (251)
254 smart00346 HTH_ICLR helix_turn 96.0 0.013 2.7E-07 43.6 4.7 57 42-116 8-64 (91)
255 PF13412 HTH_24: Winged helix- 95.9 0.0098 2.1E-07 38.4 3.4 45 40-96 4-48 (48)
256 COG1041 Predicted DNA modifica 95.9 0.1 2.2E-06 48.4 11.0 102 202-305 192-311 (347)
257 COG1092 Predicted SAM-dependen 95.9 0.028 6.1E-07 53.4 7.6 96 207-306 217-338 (393)
258 TIGR02987 met_A_Alw26 type II 95.8 0.031 6.7E-07 55.9 7.8 65 207-271 31-118 (524)
259 PF02082 Rrf2: Transcriptional 95.8 0.0088 1.9E-07 43.8 2.9 48 60-117 24-71 (83)
260 PF03492 Methyltransf_7: SAM d 95.8 0.12 2.6E-06 48.4 11.2 105 205-309 14-188 (334)
261 PF13463 HTH_27: Winged helix 95.8 0.019 4.2E-07 39.9 4.6 51 60-116 17-67 (68)
262 PRK05031 tRNA (uracil-5-)-meth 95.7 0.011 2.5E-07 56.0 4.3 51 209-261 208-265 (362)
263 PRK11783 rlmL 23S rRNA m(2)G24 95.7 0.069 1.5E-06 55.3 10.2 111 194-305 177-348 (702)
264 TIGR02431 pcaR_pcaU beta-ketoa 95.6 0.016 3.6E-07 51.9 4.8 58 42-119 12-69 (248)
265 COG2345 Predicted transcriptio 95.5 0.025 5.4E-07 49.0 5.2 64 44-119 16-79 (218)
266 PF09012 FeoC: FeoC like trans 95.5 0.017 3.6E-07 40.7 3.5 43 44-98 5-47 (69)
267 PF07757 AdoMet_MTase: Predict 95.5 0.022 4.7E-07 43.3 4.0 43 194-239 46-88 (112)
268 PF14947 HTH_45: Winged helix- 95.4 0.027 5.8E-07 40.6 4.4 48 61-121 19-66 (77)
269 TIGR00308 TRM1 tRNA(guanine-26 95.4 0.086 1.9E-06 50.1 8.8 90 208-303 45-146 (374)
270 PRK11569 transcriptional repre 95.3 0.027 5.8E-07 51.4 5.1 59 42-118 31-89 (274)
271 PF04072 LCM: Leucine carboxyl 95.2 0.093 2E-06 44.7 7.8 84 207-290 78-182 (183)
272 KOG0822 Protein kinase inhibit 95.2 0.099 2.1E-06 50.7 8.3 127 168-302 333-476 (649)
273 COG2520 Predicted methyltransf 95.1 0.12 2.6E-06 48.2 8.7 96 207-309 188-294 (341)
274 smart00419 HTH_CRP helix_turn_ 95.1 0.034 7.3E-07 35.6 3.7 33 61-97 8-40 (48)
275 PRK15090 DNA-binding transcrip 95.1 0.033 7.1E-07 50.2 4.9 58 42-118 17-74 (257)
276 PRK06266 transcription initiat 95.0 0.087 1.9E-06 44.5 6.7 45 42-98 25-69 (178)
277 PRK10163 DNA-binding transcrip 95.0 0.041 8.9E-07 50.0 5.1 58 42-117 28-85 (271)
278 COG1414 IclR Transcriptional r 94.9 0.041 8.9E-07 49.2 4.9 59 42-118 7-65 (246)
279 COG1959 Predicted transcriptio 94.9 0.046 1E-06 44.9 4.7 49 60-118 24-72 (150)
280 PF01978 TrmB: Sugar-specific 94.8 0.017 3.8E-07 40.4 1.8 47 40-98 9-55 (68)
281 TIGR02702 SufR_cyano iron-sulf 94.8 0.063 1.4E-06 46.5 5.6 67 42-120 4-70 (203)
282 PRK10857 DNA-binding transcrip 94.7 0.058 1.2E-06 45.0 5.0 47 60-116 24-70 (164)
283 cd00092 HTH_CRP helix_turn_hel 94.7 0.081 1.8E-06 36.5 5.1 34 60-97 24-57 (67)
284 KOG2793 Putative N2,N2-dimethy 94.7 0.16 3.4E-06 45.1 7.8 101 205-308 83-203 (248)
285 PRK11050 manganese transport r 94.7 0.28 6E-06 40.4 8.8 57 44-120 42-98 (152)
286 PRK09834 DNA-binding transcrip 94.5 0.06 1.3E-06 48.7 5.1 62 42-121 14-75 (263)
287 TIGR00006 S-adenosyl-methyltra 94.5 0.091 2E-06 48.3 6.0 66 195-261 9-80 (305)
288 TIGR02337 HpaR homoprotocatech 94.5 0.099 2.2E-06 40.9 5.6 69 40-122 29-97 (118)
289 PF04703 FaeA: FaeA-like prote 94.4 0.046 9.9E-07 37.4 3.1 45 43-98 4-48 (62)
290 PF03602 Cons_hypoth95: Conser 94.3 0.035 7.5E-07 47.3 2.7 95 207-304 42-153 (183)
291 smart00347 HTH_MARR helix_turn 94.3 0.12 2.6E-06 38.7 5.5 67 41-121 12-78 (101)
292 PF03141 Methyltransf_29: Puta 94.2 0.21 4.6E-06 48.4 8.1 131 205-370 363-506 (506)
293 PF01638 HxlR: HxlR-like helix 94.1 0.1 2.3E-06 38.7 4.8 64 44-122 10-74 (90)
294 PF12802 MarR_2: MarR family; 94.0 0.046 1E-06 37.2 2.5 48 41-98 7-54 (62)
295 PF04967 HTH_10: HTH DNA bindi 93.9 0.068 1.5E-06 35.3 3.0 43 32-89 5-47 (53)
296 KOG2352 Predicted spermine/spe 93.9 0.67 1.4E-05 44.9 10.8 101 209-310 50-169 (482)
297 PF01795 Methyltransf_5: MraW 93.9 0.11 2.5E-06 47.6 5.4 65 195-260 9-79 (310)
298 COG4189 Predicted transcriptio 93.8 0.12 2.6E-06 44.6 5.1 57 30-98 14-70 (308)
299 PF10672 Methyltrans_SAM: S-ad 93.8 0.087 1.9E-06 48.0 4.5 98 207-305 123-239 (286)
300 COG3355 Predicted transcriptio 93.8 0.12 2.7E-06 40.5 4.7 47 41-99 29-76 (126)
301 TIGR02010 IscR iron-sulfur clu 93.7 0.082 1.8E-06 42.6 3.8 48 60-117 24-71 (135)
302 COG0144 Sun tRNA and rRNA cyto 93.7 1 2.2E-05 42.6 11.7 104 205-308 154-292 (355)
303 COG2265 TrmA SAM-dependent met 93.7 0.089 1.9E-06 50.9 4.6 100 195-303 282-395 (432)
304 PRK03902 manganese transport t 93.6 0.17 3.6E-06 41.2 5.5 50 60-121 21-70 (142)
305 PRK11512 DNA-binding transcrip 93.6 0.57 1.2E-05 38.0 8.6 66 42-121 43-108 (144)
306 PRK11920 rirA iron-responsive 93.5 0.11 2.3E-06 42.9 4.2 48 60-117 23-70 (153)
307 PF00325 Crp: Bacterial regula 93.4 0.07 1.5E-06 31.1 2.1 31 61-95 2-32 (32)
308 COG4190 Predicted transcriptio 93.4 0.15 3.3E-06 39.9 4.5 53 34-98 59-111 (144)
309 KOG3924 Putative protein methy 93.4 0.19 4.1E-06 47.1 6.0 109 197-309 183-313 (419)
310 COG4742 Predicted transcriptio 93.4 0.15 3.3E-06 45.4 5.1 68 33-122 7-74 (260)
311 PF08220 HTH_DeoR: DeoR-like h 93.3 0.14 3E-06 34.4 3.8 42 44-97 5-46 (57)
312 COG4565 CitB Response regulato 93.3 0.13 2.8E-06 44.2 4.3 51 59-113 171-221 (224)
313 TIGR00738 rrf2_super rrf2 fami 93.3 0.12 2.6E-06 41.3 4.0 48 60-117 24-71 (132)
314 PRK06474 hypothetical protein; 93.1 0.17 3.8E-06 42.8 5.0 74 33-117 5-79 (178)
315 KOG2187 tRNA uracil-5-methyltr 92.9 0.13 2.9E-06 49.8 4.3 56 204-261 380-442 (534)
316 COG0116 Predicted N6-adenine-s 92.8 0.82 1.8E-05 43.1 9.4 108 195-304 180-344 (381)
317 KOG4058 Uncharacterized conser 92.8 0.57 1.2E-05 37.8 7.1 106 196-309 62-177 (199)
318 smart00420 HTH_DEOR helix_turn 92.7 0.23 5.1E-06 32.2 4.3 33 61-97 14-46 (53)
319 PF01047 MarR: MarR family; I 92.6 0.097 2.1E-06 35.3 2.3 46 41-98 5-50 (59)
320 PRK11014 transcriptional repre 92.6 0.16 3.6E-06 41.1 4.0 46 60-115 24-69 (141)
321 smart00344 HTH_ASNC helix_turn 92.5 0.18 3.9E-06 38.7 4.0 46 40-97 4-49 (108)
322 KOG1562 Spermidine synthase [A 92.4 0.28 6E-06 44.3 5.4 99 205-306 119-238 (337)
323 COG1321 TroR Mn-dependent tran 92.3 0.31 6.7E-06 40.2 5.3 51 60-122 23-73 (154)
324 PF01325 Fe_dep_repress: Iron 92.3 0.2 4.2E-06 34.1 3.5 35 60-98 21-55 (60)
325 PRK03573 transcriptional regul 92.3 1.5 3.3E-05 35.4 9.5 56 61-122 46-101 (144)
326 TIGR01889 Staph_reg_Sar staphy 91.9 0.42 9E-06 36.8 5.3 56 60-121 42-97 (109)
327 TIGR00122 birA_repr_reg BirA b 91.8 0.23 4.9E-06 34.7 3.4 44 41-97 2-45 (69)
328 TIGR02944 suf_reg_Xantho FeS a 91.7 0.23 4.9E-06 39.7 3.8 34 60-97 24-57 (130)
329 TIGR00373 conserved hypothetic 91.6 0.36 7.7E-06 40.0 4.9 45 42-98 17-61 (158)
330 smart00345 HTH_GNTR helix_turn 91.3 0.31 6.8E-06 32.5 3.7 34 60-97 18-52 (60)
331 KOG1099 SAM-dependent methyltr 91.3 0.59 1.3E-05 40.7 6.0 94 205-302 39-161 (294)
332 smart00418 HTH_ARSR helix_turn 91.2 0.38 8.1E-06 32.5 4.1 34 61-98 10-43 (66)
333 PF05958 tRNA_U5-meth_tr: tRNA 91.2 0.18 4E-06 47.6 3.2 61 195-259 186-253 (352)
334 PF01861 DUF43: Protein of unk 91.2 4.7 0.0001 35.6 11.6 122 207-359 44-179 (243)
335 PRK15431 ferrous iron transpor 91.2 0.39 8.6E-06 34.2 4.0 42 45-98 8-49 (78)
336 PF06962 rRNA_methylase: Putat 91.1 0.14 2.9E-06 41.3 1.9 103 233-360 1-127 (140)
337 COG1733 Predicted transcriptio 91.0 1 2.2E-05 35.4 6.7 79 19-121 12-91 (120)
338 PF03514 GRAS: GRAS domain fam 91.0 1.1 2.4E-05 42.7 8.3 44 196-240 100-150 (374)
339 PF06859 Bin3: Bicoid-interact 90.6 0.092 2E-06 40.2 0.5 85 267-360 3-94 (110)
340 KOG2730 Methylase [General fun 90.4 0.24 5.3E-06 42.7 2.9 53 207-261 94-154 (263)
341 PF01726 LexA_DNA_bind: LexA D 90.2 0.32 6.9E-06 33.7 2.9 35 61-98 25-59 (65)
342 COG0742 N6-adenine-specific me 90.1 2.3 4.9E-05 36.1 8.4 97 207-304 43-154 (187)
343 PF08461 HTH_12: Ribonuclease 89.8 0.64 1.4E-05 32.2 4.2 47 44-97 3-50 (66)
344 TIGR01884 cas_HTH CRISPR locus 89.6 0.53 1.1E-05 40.8 4.5 59 40-116 144-202 (203)
345 cd00090 HTH_ARSR Arsenical Res 89.6 0.66 1.4E-05 32.3 4.3 57 41-115 9-65 (78)
346 COG1064 AdhP Zn-dependent alco 89.3 2.8 6E-05 39.2 9.1 93 205-307 164-262 (339)
347 COG0275 Predicted S-adenosylme 89.1 0.88 1.9E-05 41.4 5.5 65 195-260 12-83 (314)
348 PF11899 DUF3419: Protein of u 89.0 0.71 1.5E-05 44.0 5.2 60 250-309 275-339 (380)
349 PF08279 HTH_11: HTH domain; 88.8 0.75 1.6E-05 30.3 3.8 31 60-94 14-44 (55)
350 PRK10870 transcriptional repre 88.8 0.89 1.9E-05 38.4 5.2 57 60-122 70-126 (176)
351 cd08283 FDH_like_1 Glutathione 88.7 3.1 6.8E-05 39.8 9.6 99 205-305 182-307 (386)
352 PRK05638 threonine synthase; V 88.6 0.71 1.5E-05 45.2 5.0 63 41-120 373-437 (442)
353 PHA02943 hypothetical protein; 88.5 0.74 1.6E-05 37.2 4.1 43 43-98 15-57 (165)
354 cd07377 WHTH_GntR Winged helix 88.4 0.93 2E-05 30.8 4.3 32 62-97 26-57 (66)
355 smart00529 HTH_DTXR Helix-turn 88.0 0.83 1.8E-05 34.0 4.1 46 64-121 2-47 (96)
356 PF12692 Methyltransf_17: S-ad 88.0 1.3 2.9E-05 35.8 5.3 110 195-307 18-137 (160)
357 PRK14165 winged helix-turn-hel 87.9 0.97 2.1E-05 39.4 4.9 52 61-121 21-72 (217)
358 COG1497 Predicted transcriptio 87.3 0.85 1.8E-05 39.8 4.1 85 61-161 25-112 (260)
359 PRK11179 DNA-binding transcrip 87.3 0.86 1.9E-05 37.5 4.1 46 40-97 10-55 (153)
360 cd07153 Fur_like Ferric uptake 87.1 0.96 2.1E-05 35.1 4.1 51 41-98 3-54 (116)
361 PF06163 DUF977: Bacterial pro 87.0 1.1 2.5E-05 34.9 4.3 49 37-97 10-58 (127)
362 PRK01747 mnmC bifunctional tRN 86.9 1.9 4.1E-05 44.5 7.3 96 207-302 57-204 (662)
363 PRK11169 leucine-responsive tr 86.6 0.84 1.8E-05 38.0 3.7 48 38-97 13-60 (164)
364 TIGR01610 phage_O_Nterm phage 86.4 1.1 2.4E-05 33.6 3.9 33 61-97 47-79 (95)
365 PF00392 GntR: Bacterial regul 86.4 0.71 1.5E-05 31.7 2.6 36 59-98 21-57 (64)
366 PRK09424 pntA NAD(P) transhydr 86.3 5.9 0.00013 39.4 9.9 95 207-305 164-286 (509)
367 PF02002 TFIIE_alpha: TFIIE al 85.6 0.82 1.8E-05 34.9 2.9 42 44-97 18-59 (105)
368 TIGR01321 TrpR trp operon repr 85.3 3.3 7.1E-05 30.8 5.8 41 37-90 40-80 (94)
369 COG1522 Lrp Transcriptional re 85.3 1.2 2.7E-05 36.4 4.0 46 40-97 9-54 (154)
370 PRK04172 pheS phenylalanyl-tRN 85.0 1.3 2.8E-05 44.0 4.7 65 40-122 7-71 (489)
371 PF13384 HTH_23: Homeodomain-l 84.4 0.85 1.8E-05 29.4 2.2 41 40-94 6-46 (50)
372 PF07109 Mg-por_mtran_C: Magne 84.3 5.6 0.00012 29.8 6.6 82 274-369 4-96 (97)
373 COG1063 Tdh Threonine dehydrog 84.2 4.9 0.00011 37.9 8.1 94 208-309 169-274 (350)
374 COG3510 CmcI Cephalosporin hyd 84.2 12 0.00026 31.9 9.2 103 207-311 69-187 (237)
375 PF05711 TylF: Macrocin-O-meth 84.1 1 2.2E-05 40.1 3.2 98 207-305 74-213 (248)
376 PF12793 SgrR_N: Sugar transpo 84.1 1.4 2.9E-05 34.4 3.5 35 60-98 18-52 (115)
377 PRK10742 putative methyltransf 83.8 2.1 4.6E-05 38.0 5.0 47 196-245 76-125 (250)
378 PF13730 HTH_36: Helix-turn-he 83.8 1.1 2.4E-05 29.5 2.6 29 63-95 27-55 (55)
379 PF13518 HTH_28: Helix-turn-he 83.7 1.6 3.4E-05 28.2 3.3 29 62-94 13-41 (52)
380 PF02153 PDH: Prephenate dehyd 83.7 2 4.4E-05 38.7 5.0 76 221-302 1-77 (258)
381 PF12324 HTH_15: Helix-turn-he 83.6 1.1 2.5E-05 31.8 2.6 35 44-90 29-63 (77)
382 PF07381 DUF1495: Winged helix 83.5 2.8 6.1E-05 31.0 4.7 69 38-121 8-87 (90)
383 PRK13777 transcriptional regul 83.2 3.1 6.6E-05 35.4 5.6 67 42-122 48-114 (185)
384 PF13545 HTH_Crp_2: Crp-like h 83.2 1.1 2.5E-05 31.6 2.6 33 61-97 28-60 (76)
385 PF01189 Nol1_Nop2_Fmu: NOL1/N 83.1 2.6 5.7E-05 38.5 5.6 103 205-307 83-222 (283)
386 PLN02853 Probable phenylalanyl 82.1 2.4 5.1E-05 41.6 5.0 69 39-125 3-73 (492)
387 PRK10046 dpiA two-component re 82.1 2.7 5.8E-05 36.8 5.1 45 43-98 166-210 (225)
388 KOG1596 Fibrillarin and relate 81.6 8.3 0.00018 34.0 7.6 97 205-305 154-262 (317)
389 PF08784 RPA_C: Replication pr 81.2 2.1 4.5E-05 32.4 3.5 50 40-97 48-97 (102)
390 COG3432 Predicted transcriptio 81.0 1.8 3.9E-05 32.3 2.9 53 60-121 30-82 (95)
391 PRK13509 transcriptional repre 80.9 2.3 4.9E-05 38.2 4.2 44 42-97 8-51 (251)
392 TIGR03433 padR_acidobact trans 80.8 6 0.00013 29.9 5.9 57 61-121 17-81 (100)
393 COG1846 MarR Transcriptional r 80.4 3 6.4E-05 32.2 4.4 72 38-123 21-92 (126)
394 PRK09775 putative DNA-binding 80.0 2.4 5.2E-05 41.4 4.3 54 44-117 5-58 (442)
395 PRK10906 DNA-binding transcrip 79.5 2.4 5.1E-05 38.1 3.9 45 41-97 7-51 (252)
396 COG1378 Predicted transcriptio 79.3 4.1 8.8E-05 36.4 5.3 61 42-120 19-79 (247)
397 COG1255 Uncharacterized protei 78.9 25 0.00053 27.3 8.5 87 206-304 12-102 (129)
398 PRK04214 rbn ribonuclease BN/u 78.8 2.6 5.7E-05 40.8 4.3 34 60-97 309-342 (412)
399 PRK07502 cyclohexadienyl dehyd 78.7 11 0.00024 34.8 8.2 90 208-302 6-98 (307)
400 PF03444 HrcA_DNA-bdg: Winged 78.7 2.9 6.4E-05 29.9 3.3 48 60-117 22-69 (78)
401 COG3413 Predicted DNA binding 78.4 2.2 4.8E-05 37.2 3.3 44 31-89 159-202 (215)
402 KOG0024 Sorbitol dehydrogenase 78.4 12 0.00026 34.6 7.9 97 205-309 167-278 (354)
403 COG0287 TyrA Prephenate dehydr 78.3 11 0.00025 34.3 7.9 87 209-301 4-95 (279)
404 PF02796 HTH_7: Helix-turn-hel 78.0 2.6 5.7E-05 26.6 2.7 23 61-87 21-43 (45)
405 COG1568 Predicted methyltransf 78.0 10 0.00022 34.3 7.1 202 63-303 36-259 (354)
406 PF05584 Sulfolobus_pRN: Sulfo 77.8 5.1 0.00011 28.1 4.2 41 44-97 10-50 (72)
407 PF10007 DUF2250: Uncharacteri 77.8 3.7 8E-05 30.5 3.8 46 41-98 9-54 (92)
408 PTZ00326 phenylalanyl-tRNA syn 77.7 4.4 9.5E-05 39.9 5.3 70 39-125 6-76 (494)
409 PRK13699 putative methylase; P 77.3 8.9 0.00019 33.8 6.8 76 252-357 2-95 (227)
410 COG2512 Predicted membrane-ass 77.1 2.7 5.8E-05 37.8 3.4 48 41-99 197-244 (258)
411 cd00315 Cyt_C5_DNA_methylase C 76.9 27 0.00058 31.7 10.0 120 210-355 2-140 (275)
412 PRK10434 srlR DNA-bindng trans 76.7 3 6.6E-05 37.5 3.7 45 41-97 7-51 (256)
413 PF10354 DUF2431: Domain of un 76.3 44 0.00095 27.8 10.4 120 214-360 3-154 (166)
414 TIGR00498 lexA SOS regulatory 75.9 3.7 8.1E-05 35.2 4.0 34 60-97 24-58 (199)
415 PF05206 TRM13: Methyltransfer 75.6 7.9 0.00017 34.8 6.0 35 205-239 16-55 (259)
416 TIGR02787 codY_Gpos GTP-sensin 74.9 4.4 9.6E-05 35.7 4.1 44 43-97 187-230 (251)
417 PF03551 PadR: Transcriptional 74.7 3.6 7.8E-05 29.1 3.0 58 61-118 9-70 (75)
418 COG1777 Predicted transcriptio 74.2 3.6 7.7E-05 35.3 3.2 76 34-122 10-85 (217)
419 cd01842 SGNH_hydrolase_like_5 73.9 6.8 0.00015 32.9 4.8 41 267-307 52-102 (183)
420 PRK09802 DNA-binding transcrip 73.8 4.2 9E-05 36.9 3.9 45 41-97 19-63 (269)
421 PF05971 Methyltransf_10: Prot 73.6 4 8.7E-05 37.4 3.7 70 208-277 103-189 (299)
422 KOG2539 Mitochondrial/chloropl 73.3 9.8 0.00021 36.9 6.2 102 207-308 200-319 (491)
423 TIGR03879 near_KaiC_dom probab 73.2 2.6 5.7E-05 29.8 1.9 32 61-96 32-63 (73)
424 PF13404 HTH_AsnC-type: AsnC-t 73.0 4.5 9.7E-05 25.2 2.7 38 40-89 4-41 (42)
425 PF08222 HTH_CodY: CodY helix- 72.7 3.4 7.4E-05 27.4 2.1 33 61-97 4-36 (61)
426 PRK09334 30S ribosomal protein 72.7 4.1 8.9E-05 29.8 2.8 34 61-98 41-74 (86)
427 PRK09954 putative kinase; Prov 72.6 4.6 0.0001 38.2 4.1 43 42-96 6-48 (362)
428 PF05331 DUF742: Protein of un 72.6 5.7 0.00012 30.8 3.8 33 61-97 55-87 (114)
429 PF03686 UPF0146: Uncharacteri 72.5 9.6 0.00021 30.1 5.0 87 207-306 13-104 (127)
430 COG1802 GntR Transcriptional r 72.4 5.3 0.00012 35.1 4.2 37 58-98 36-72 (230)
431 PF02636 Methyltransf_28: Puta 72.0 6.8 0.00015 35.1 4.8 35 208-242 19-62 (252)
432 PF08221 HTH_9: RNA polymerase 71.8 4.7 0.0001 27.5 2.9 33 61-97 27-59 (62)
433 PRK10430 DNA-binding transcrip 71.8 6 0.00013 34.8 4.4 49 61-113 178-226 (239)
434 COG1565 Uncharacterized conser 71.7 9.5 0.00021 35.8 5.6 64 176-244 51-123 (370)
435 PHA02591 hypothetical protein; 71.5 5.1 0.00011 28.4 2.9 24 61-88 59-82 (83)
436 PF07789 DUF1627: Protein of u 70.7 7.2 0.00016 31.4 4.0 46 60-114 5-50 (155)
437 PRK00135 scpB segregation and 70.6 10 0.00022 32.3 5.3 60 42-117 93-152 (188)
438 KOG2651 rRNA adenine N-6-methy 70.3 8.1 0.00018 36.4 4.8 44 195-239 141-184 (476)
439 PF03428 RP-C: Replication pro 70.3 6.3 0.00014 33.2 3.9 32 62-97 71-103 (177)
440 COG1510 Predicted transcriptio 70.3 5 0.00011 33.3 3.2 35 60-98 40-74 (177)
441 PRK11534 DNA-binding transcrip 70.2 5.5 0.00012 34.8 3.7 37 58-98 27-63 (224)
442 PRK11886 bifunctional biotin-- 70.1 6.2 0.00013 36.7 4.3 43 42-96 7-49 (319)
443 PF01358 PARP_regulatory: Poly 69.8 19 0.00042 32.7 7.0 81 206-310 57-141 (294)
444 TIGR01202 bchC 2-desacetyl-2-h 69.7 30 0.00065 31.8 8.7 87 207-306 144-233 (308)
445 TIGR03697 NtcA_cyano global ni 69.7 5.1 0.00011 33.9 3.3 33 61-97 143-175 (193)
446 PRK10411 DNA-binding transcrip 69.6 7.1 0.00015 34.7 4.3 43 43-97 8-50 (240)
447 COG5379 BtaA S-adenosylmethion 69.5 5.6 0.00012 36.1 3.5 70 240-309 296-371 (414)
448 TIGR02719 repress_PhaQ poly-be 69.2 36 0.00078 27.4 7.8 79 33-121 18-99 (138)
449 KOG1209 1-Acyl dihydroxyaceton 69.0 80 0.0017 27.7 10.3 76 206-302 5-84 (289)
450 smart00531 TFIIE Transcription 68.7 6.4 0.00014 32.1 3.5 42 43-96 5-46 (147)
451 PF11599 AviRa: RRNA methyltra 68.4 31 0.00067 30.1 7.5 100 205-304 49-214 (246)
452 KOG2352 Predicted spermine/spe 67.8 9.6 0.00021 37.1 5.0 102 207-308 295-420 (482)
453 PRK12423 LexA repressor; Provi 67.6 9.6 0.00021 32.9 4.6 35 61-98 25-59 (202)
454 PRK11753 DNA-binding transcrip 67.6 6 0.00013 34.0 3.4 33 61-97 168-200 (211)
455 PF14394 DUF4423: Domain of un 67.6 10 0.00022 31.8 4.6 43 63-117 41-85 (171)
456 PRK11414 colanic acid/biofilm 67.3 7 0.00015 34.1 3.8 36 58-97 31-66 (221)
457 COG0640 ArsR Predicted transcr 67.1 9.9 0.00021 27.8 4.2 53 34-98 20-72 (110)
458 KOG1501 Arginine N-methyltrans 66.8 5.4 0.00012 38.3 3.0 41 207-248 66-107 (636)
459 PF04182 B-block_TFIIIC: B-blo 66.8 7.9 0.00017 27.5 3.3 48 40-97 3-50 (75)
460 COG1349 GlpR Transcriptional r 66.8 6.7 0.00014 35.2 3.6 44 42-97 8-51 (253)
461 COG2933 Predicted SAM-dependen 66.7 14 0.00031 33.1 5.4 68 205-274 209-279 (358)
462 PRK13239 alkylmercury lyase; P 66.5 6.6 0.00014 33.9 3.3 39 40-90 23-61 (206)
463 PRK13918 CRP/FNR family transc 65.7 6.8 0.00015 33.4 3.4 34 60-97 148-181 (202)
464 TIGR03338 phnR_burk phosphonat 65.7 7.1 0.00015 33.7 3.5 36 59-98 32-67 (212)
465 PRK04424 fatty acid biosynthes 65.1 5.3 0.00011 34.0 2.5 44 42-97 10-53 (185)
466 PF01475 FUR: Ferric uptake re 65.1 6.4 0.00014 30.7 2.8 54 38-98 7-61 (120)
467 PRK05225 ketol-acid reductoiso 64.8 8.3 0.00018 37.5 3.9 92 207-306 35-133 (487)
468 PF09904 HTH_43: Winged helix- 64.7 11 0.00023 27.8 3.5 60 41-114 10-69 (90)
469 COG1675 TFA1 Transcription ini 64.5 11 0.00023 31.8 4.1 45 42-98 21-65 (176)
470 PF06557 DUF1122: Protein of u 64.0 15 0.00033 30.2 4.7 63 281-360 63-125 (170)
471 PRK11161 fumarate/nitrate redu 63.4 7.6 0.00016 34.1 3.3 33 61-97 184-216 (235)
472 cd08237 ribitol-5-phosphate_DH 63.3 33 0.00072 32.0 7.8 93 206-305 162-257 (341)
473 PRK01381 Trp operon repressor; 62.9 9.1 0.0002 28.7 3.0 39 38-89 41-79 (99)
474 PF08484 Methyltransf_14: C-me 62.7 87 0.0019 25.9 9.5 89 207-302 67-157 (160)
475 PF03297 Ribosomal_S25: S25 ri 62.5 6.9 0.00015 29.8 2.4 34 61-98 59-92 (105)
476 PF05732 RepL: Firmicute plasm 62.5 9.3 0.0002 31.8 3.4 45 62-118 76-120 (165)
477 PF02254 TrkA_N: TrkA-N domain 61.9 11 0.00025 28.7 3.7 81 216-302 4-94 (116)
478 PF09824 ArsR: ArsR transcript 61.9 11 0.00024 30.7 3.6 50 32-97 10-59 (160)
479 PRK09391 fixK transcriptional 61.4 8.7 0.00019 33.8 3.3 33 61-97 179-211 (230)
480 PF00165 HTH_AraC: Bacterial r 61.2 6.6 0.00014 24.1 1.8 26 60-89 7-32 (42)
481 PRK00215 LexA repressor; Valid 60.9 12 0.00026 32.3 4.0 36 60-98 22-57 (205)
482 PF05430 Methyltransf_30: S-ad 59.9 15 0.00032 29.0 4.0 54 284-370 70-123 (124)
483 KOG1098 Putative SAM-dependent 59.6 23 0.0005 35.7 5.9 49 191-239 28-77 (780)
484 PF13936 HTH_38: Helix-turn-he 59.5 13 0.00029 23.2 3.0 23 61-87 20-42 (44)
485 COG4901 Ribosomal protein S25 59.5 11 0.00024 28.3 2.9 34 61-98 59-92 (107)
486 COG1654 BirA Biotin operon rep 59.1 13 0.00028 26.8 3.2 46 60-116 18-63 (79)
487 PRK10225 DNA-binding transcrip 58.9 12 0.00025 33.6 3.7 37 58-98 29-66 (257)
488 PRK11639 zinc uptake transcrip 58.8 12 0.00027 31.2 3.6 54 38-98 25-79 (169)
489 PRK09990 DNA-binding transcrip 58.8 12 0.00025 33.4 3.7 37 58-98 27-64 (251)
490 PRK09464 pdhR transcriptional 58.7 12 0.00026 33.4 3.7 36 59-98 31-67 (254)
491 COG1386 scpB Chromosome segreg 58.5 25 0.00054 29.9 5.3 61 41-117 94-154 (184)
492 COG0604 Qor NADPH:quinone redu 58.2 34 0.00073 32.0 6.8 94 205-307 140-244 (326)
493 PF13551 HTH_29: Winged helix- 58.1 10 0.00022 28.7 2.8 28 63-94 14-41 (112)
494 PRK09880 L-idonate 5-dehydroge 57.9 68 0.0015 29.9 8.9 91 207-305 169-267 (343)
495 COG2524 Predicted transcriptio 57.8 23 0.0005 31.6 5.1 48 60-117 24-71 (294)
496 PTZ00357 methyltransferase; Pr 57.5 27 0.00059 35.8 6.1 90 209-299 702-830 (1072)
497 PRK10736 hypothetical protein; 57.3 15 0.00033 34.9 4.2 44 42-98 311-354 (374)
498 PRK15001 SAM-dependent 23S rib 57.3 58 0.0013 31.1 8.2 91 210-307 47-145 (378)
499 PRK10421 DNA-binding transcrip 57.3 13 0.00028 33.2 3.7 36 58-97 22-58 (253)
500 PRK09462 fur ferric uptake reg 57.1 17 0.00036 29.6 4.0 55 38-98 16-71 (148)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=1e-44 Score=325.05 Aligned_cols=336 Identities=55% Similarity=0.924 Sum_probs=299.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCC-CCCCCcchHHHHHHHHhcCCce
Q 017495 17 EEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPT-KNPDAPFLLDRMLSLLASYDIL 95 (370)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~-~~~~~~~~l~~~L~~L~~~g~l 95 (370)
++...+++++++++..++++.+|++|||||+|.+. + + ..|+|..+.. ++|..|..++|+||.|++.+++
T Consensus 4 ~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~-----~---~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~ 73 (342)
T KOG3178|consen 4 NEASLRAMRLANGFALPMVLKAACELGVFDILANA-----G---S--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSIL 73 (342)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhC-----C---C--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhc
Confidence 45667889999999999999999999999999987 1 2 7888888874 5777999999999999999999
Q ss_pred eccccCCCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCChhhhccC
Q 017495 96 RCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGT 175 (370)
Q Consensus 96 ~~~~~~~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~ 175 (370)
+...+. + + .|++++.++++.+++. ..++++++...+.+..++.|.++.++++.+..++...+|+..++|...
T Consensus 74 k~~~~~---~--~-~Y~~~~~~~~~l~~~~--~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~ 145 (342)
T KOG3178|consen 74 KCRLVG---G--E-VYSATPVCKYFLKDSG--GGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGA 145 (342)
T ss_pred eeeeec---c--e-eeeccchhhhheecCC--CCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhccc
Confidence 975321 1 3 7999999997665544 378999988888899999999999999999999999999888999888
Q ss_pred CchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-CCCeE
Q 017495 176 DPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-PGVEH 254 (370)
Q Consensus 176 ~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-~rv~~ 254 (370)
+......+++.|...+......++..+.+|+.....+|||||.|..+..++..||.++++.+|+|.+++.+... +.|++
T Consensus 146 ~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~ 225 (342)
T KOG3178|consen 146 DERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEH 225 (342)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcce
Confidence 88888999999999998888888888888889999999999999999999999999999999999999999887 88999
Q ss_pred EeccCCCCCCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCC-CCCCccchhhhhhhhHHhhhcCC
Q 017495 255 VGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLV-PENQASSHIVFEQDLFMLAQTTG 333 (370)
Q Consensus 255 ~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~ 333 (370)
+.+|++.+.|.+|+|++.++||||+|++|.++|+||+..|+|+|+|++.|.+.++. ............+|+.|+....+
T Consensus 226 v~gdmfq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~ 305 (342)
T KOG3178|consen 226 VAGDMFQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSG 305 (342)
T ss_pred ecccccccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999988863 22222345567789999988778
Q ss_pred CcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 334 GRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 334 ~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
|++|+.+||+.++.++||.+..+...+...++||++|
T Consensus 306 Gkert~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 306 GKERTLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred ceeccHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 9999999999999999999999999999999999987
No 2
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=3.7e-38 Score=291.80 Aligned_cols=289 Identities=15% Similarity=0.291 Sum_probs=211.1
Q ss_pred HHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccce
Q 017495 32 LPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVY 111 (370)
Q Consensus 32 ~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y 111 (370)
..++|++|++|||||+|.++ |.|++|||+++++ +++.+++||++|++.|+|++. +++|
T Consensus 3 ~~~~l~aa~~Lglfd~L~~g---------p~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~~---------~~~y 60 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAEG---------PKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE---------DGKW 60 (306)
T ss_pred hHHHHHHHHHcCcHHHHhcC---------CCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEec---------CCcE
Confidence 46899999999999999886 8999999999999 999999999999999999962 4789
Q ss_pred ecchhhhhhhcCCCCCCC---ChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCChhhhccCCchHHHHHHHHHH
Q 017495 112 GAAPICKFLIKNQDDDDG---SVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMS 188 (370)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~ 188 (370)
++|+.+..+..+++ .. ++.++..+. .......|.+|.+++++ .++|...++ +....++. ..|...|.
T Consensus 61 ~~t~~~~~~l~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~-~~~~~~~~~-----~~~~~~~~-~~~~~~~~ 130 (306)
T TIGR02716 61 SLTEFADYMFSPTP--KEPNLHQTPVAKAM-AFLADDFYMGLSQAVRG-QKNFKGQVP-----YPPVTRED-NLYFEEIH 130 (306)
T ss_pred ecchhHHhhccCCc--cchhhhcCchHHHH-HHHHHHHHHhHHHHhcC-CcccccccC-----CCCCCHHH-HHhHHHHH
Confidence 99999985554433 11 122333322 12233578999999984 434432221 21222222 23344443
Q ss_pred -hchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCCeEEeccCC
Q 017495 189 -NHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHVGGDMF 260 (370)
Q Consensus 189 -~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv~~~~~D~~ 260 (370)
.......+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++++ +|++++.+|++
T Consensus 131 ~~~~~~~~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~ 209 (306)
T TIGR02716 131 RSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIY 209 (306)
T ss_pred HhcchhHHHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCcc
Confidence 333334455666665 788899999999999999999999999999999998888876532 57999999999
Q ss_pred C-CCCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHh-hh-cCCCccc
Q 017495 261 E-NVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFML-AQ-TTGGRER 337 (370)
Q Consensus 261 ~-~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-~~-~~~~~~~ 337 (370)
+ +.|.+|+|++.+++|+|+++.+.++|++++++|+|||+|+|.|.+.++... +. +....+..+. .. ..-...+
T Consensus 210 ~~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T TIGR02716 210 KESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN-PN---FDYLSHYILGAGMPFSVLGFK 285 (306)
T ss_pred CCCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC-ch---hhHHHHHHHHcccccccccCC
Confidence 7 666679999999999999988999999999999999999999998765422 11 1111221110 00 0011234
Q ss_pred CHHHHHHHHHhCCCCcceEE
Q 017495 338 SKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 338 t~~e~~~ll~~aGf~~v~~~ 357 (370)
+.++|.++|+++||+.++++
T Consensus 286 ~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 286 EQARYKEILESLGYKDVTMV 305 (306)
T ss_pred CHHHHHHHHHHcCCCeeEec
Confidence 58999999999999988764
No 3
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=7.1e-39 Score=286.86 Aligned_cols=236 Identities=35% Similarity=0.656 Sum_probs=203.9
Q ss_pred ccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCChhhhccCCchHHHHHHHHH
Q 017495 108 ERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAM 187 (370)
Q Consensus 108 ~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 187 (370)
+++|++|+.++.|+.+++ ..++..++.+...+.+++.|.+|.+++++|.++|+..+|.++|++++++++..+.|+++|
T Consensus 3 ~~~y~~t~~s~~ll~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 80 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHS--SPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAM 80 (241)
T ss_dssp TEEEEE-HHHHGGSTTTT--TTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCC--cCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHH
Confidence 589999999997776655 357777777766788999999999999999999999999889999999999999999999
Q ss_pred HhchHHHH-HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCCCeEEeccCCCCCCCC
Q 017495 188 SNHSALVM-NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFENVPRG 266 (370)
Q Consensus 188 ~~~~~~~~-~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~~p~~ 266 (370)
...+.... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+||+++.||+++++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~ 159 (241)
T PF00891_consen 81 AEYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVA 159 (241)
T ss_dssp HHHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSE
T ss_pred Hhhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccc
Confidence 99888777 67777777 99999999999999999999999999999999999999998888889999999999988889
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCC--cEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPEN--GKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pg--G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
|+|++++|||+|+|+++..||++++++|+|| |+|+|.|.+.++....+........+|+.|+..+ +|+.||.+||++
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~ 238 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEA 238 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHH
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHH
Confidence 9999999999999999999999999999999 9999999999887655432222357899999986 799999999999
Q ss_pred HHH
Q 017495 345 LAK 347 (370)
Q Consensus 345 ll~ 347 (370)
||+
T Consensus 239 ll~ 241 (241)
T PF00891_consen 239 LLK 241 (241)
T ss_dssp HHH
T ss_pred HhC
Confidence 985
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.78 E-value=7e-18 Score=147.43 Aligned_cols=155 Identities=20% Similarity=0.242 Sum_probs=120.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC--CEEEeccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG--DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~--D~i~~~~v 274 (370)
..++.+|||||||||.++..+++..+..+++++|+ +.|++.+++. ..++|+.+|+.. |+|+. |+|++++.
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 44689999999999999999999999999999998 9999988764 238999999999 99976 99999999
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhH-Hhhhc---C--CC-----------ccc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLF-MLAQT---T--GG-----------RER 337 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~---~--~~-----------~~~ 337 (370)
|++++|. .++|++++|+|||||++++.|...+..+... .....+... .+-.. . +. ...
T Consensus 129 lrnv~d~--~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p 203 (238)
T COG2226 129 LRNVTDI--DKALKEMYRVLKPGGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP 203 (238)
T ss_pred hhcCCCH--HHHHHHHHHhhcCCeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCC
Confidence 9999965 6899999999999999999999887653221 111111111 11110 0 01 124
Q ss_pred CHHHHHHHHHhCCCCcceEEecCCCee
Q 017495 338 SKKEYEALAKNSGFSGLEIVCCAYNSW 364 (370)
Q Consensus 338 t~~e~~~ll~~aGf~~v~~~~~~~~~~ 364 (370)
+.+++.++++++||+.+.......+..
T Consensus 204 ~~~~l~~~~~~~gf~~i~~~~~~~G~~ 230 (238)
T COG2226 204 DQEELKQMIEKAGFEEVRYENLTFGIV 230 (238)
T ss_pred CHHHHHHHHHhcCceEEeeEeeeeeeE
Confidence 789999999999999998766654444
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.77 E-value=2.3e-17 Score=148.99 Aligned_cols=155 Identities=20% Similarity=0.156 Sum_probs=115.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC---------CCCeEEeccCCC-CCCCC--CEEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF---------PGVEHVGGDMFE-NVPRG--DAIF 270 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~---------~rv~~~~~D~~~-~~p~~--D~i~ 270 (370)
..+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.++++ .+++++.+|+.+ +++++ |+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 5567899999999999999998875 5679999998 8998877532 468999999987 77754 9999
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhh-hhhH--Hh-hhcCC-----------Cc
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFE-QDLF--ML-AQTTG-----------GR 335 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~-~d~~--~~-~~~~~-----------~~ 335 (370)
+.+++|++++. ..+|++++++|||||++++.|...++..... ....+ +... .. ..... ..
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPFTT---SMQEWMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHHHH---HHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 99999999865 6899999999999999999998765531110 00000 0000 00 00000 22
Q ss_pred ccCHHHHHHHHHhCCCCcceEEecCCCee
Q 017495 336 ERSKKEYEALAKNSGFSGLEIVCCAYNSW 364 (370)
Q Consensus 336 ~~t~~e~~~ll~~aGf~~v~~~~~~~~~~ 364 (370)
.++.+++.++++++||+.++......+..
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~ 254 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEISGGLM 254 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcCCCee
Confidence 46899999999999999999888765554
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.77 E-value=2.1e-19 Score=158.69 Aligned_cols=162 Identities=23% Similarity=0.299 Sum_probs=81.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC--CEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG--DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~--D~i~~~~ 273 (370)
..++.+|||+|||||.++..+++.. |+.+++++|+ +.+++.+++. .+|+++++|+.+ ++++. |+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 5567899999999999999999875 6789999998 9999988752 479999999998 88865 9999999
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhh--hHHhh--hcCC-----------CcccC
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQD--LFMLA--QTTG-----------GRERS 338 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d--~~~~~--~~~~-----------~~~~t 338 (370)
.||+++|. .+.|++++++|||||+++|.|...+..+.-. ..+...+. +..+. .... ....+
T Consensus 125 glrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~--~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~ 200 (233)
T PF01209_consen 125 GLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRNPLLR--ALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPS 200 (233)
T ss_dssp -GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SSHHHH--HHHHH--------------------------------
T ss_pred hHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCCchhh--ceeeeeecccccccccccccccccccccccccccccc
Confidence 99999875 5789999999999999999999887641110 00000111 00000 0000 11237
Q ss_pred HHHHHHHHHhCCCCcceEEecCC-CeeEEEEeC
Q 017495 339 KKEYEALAKNSGFSGLEIVCCAY-NSWVMEFHK 370 (370)
Q Consensus 339 ~~e~~~ll~~aGf~~v~~~~~~~-~~~~~e~~k 370 (370)
.+++.++|+++||+.++..+... ..++..+.|
T Consensus 201 ~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 201 PEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ---------------------------------
T ss_pred cccccccccccccccccccccccccccccccCC
Confidence 89999999999999999888754 444555544
No 7
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.75 E-value=4.8e-18 Score=151.86 Aligned_cols=155 Identities=21% Similarity=0.197 Sum_probs=116.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhC--CCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCCCEEEeccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRY--PCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRGDAIFLKWM 274 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~D~i~~~~v 274 (370)
.+..+|||||||+|..+..+++.+ |+.+++++|+ +.+++.+++. .+++++.+|+.+ +.+..|+|++.++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 466799999999999999999874 7899999999 8898877542 368999999987 5555699999999
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhh-----------------cCCCccc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQ-----------------TTGGRER 337 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-----------------~~~~~~~ 337 (370)
+|++++++...+|++++++|+|||.+++.|.+.+++..... ....+.+... .......
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH-----LLIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 99999888889999999999999999999987755322110 0111111000 0012346
Q ss_pred CHHHHHHHHHhCCCCcceEEecCCCeeE
Q 017495 338 SKKEYEALAKNSGFSGLEIVCCAYNSWV 365 (370)
Q Consensus 338 t~~e~~~ll~~aGf~~v~~~~~~~~~~~ 365 (370)
|.+++++++++|||+.++...-.....+
T Consensus 207 s~~~~~~~l~~aGF~~~~~~~~~~~~~~ 234 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVELWFQCFNFGS 234 (239)
T ss_pred CHHHHHHHHHHcCCchHHHHHHHHhHhH
Confidence 8999999999999998775443333333
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.74 E-value=5.7e-17 Score=146.52 Aligned_cols=156 Identities=18% Similarity=0.242 Sum_probs=119.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCC-CCCCC--
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFE-NVPRG-- 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~-~~p~~-- 266 (370)
...++..+. +++..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ ..++.++.+|+.+ ++|.+
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 345666665 7788999999999999999998765 679999998 888776654 2579999999987 66654
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
|+|++..+++|++.++...+|++++++|||||+|++.+......... ...... .... ......+.+++.++|
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~-----~~~~~~--~~~~-~~~~~~~~~~~~~~l 190 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENW-----DEEFKA--YIKK-RKYTLIPIQEYGDLI 190 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCc-----HHHHHH--HHHh-cCCCCCCHHHHHHHH
Confidence 99999999988887677899999999999999999999876542111 011111 1111 123346899999999
Q ss_pred HhCCCCcceEEecC
Q 017495 347 KNSGFSGLEIVCCA 360 (370)
Q Consensus 347 ~~aGf~~v~~~~~~ 360 (370)
+++||++++.....
T Consensus 191 ~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 191 KSCNFQNVVAKDIS 204 (263)
T ss_pred HHCCCCeeeEEeCc
Confidence 99999999987754
No 9
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.72 E-value=1.1e-16 Score=142.43 Aligned_cols=168 Identities=18% Similarity=0.225 Sum_probs=121.7
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC-CCCCC-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE-NVPRG- 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~-~~p~~- 266 (370)
.++..+. ..+..+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ .++++++.+|+.+ +++..
T Consensus 36 ~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 36 DTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 3444454 6667899999999999999999886 6789999998 888776653 2578999999987 55543
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhh-hhhhHHhh---------------
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVF-EQDLFMLA--------------- 329 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~-~~d~~~~~--------------- 329 (370)
|+|++.+++|++++. .++|+++.++|+|||++++.+...+.... ...... .+...+-.
T Consensus 115 fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 189 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIPG---FKQLYFFYFKYIMPLFGKLFAKSYKEYSWL 189 (231)
T ss_pred ccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCChH---HHHHHHHHHcChhHHhhHHhcCCHHHHHHH
Confidence 999999999998765 58999999999999999998876543210 000000 00000000
Q ss_pred hcCCCcccCHHHHHHHHHhCCCCcceEEecC-CCeeEEEEeC
Q 017495 330 QTTGGRERSKKEYEALAKNSGFSGLEIVCCA-YNSWVMEFHK 370 (370)
Q Consensus 330 ~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~~~~e~~k 370 (370)
........+.+++.++|+++||+++++.... +..+++..+|
T Consensus 190 ~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 190 QESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0001123478999999999999999998886 6777888876
No 10
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.71 E-value=6.3e-17 Score=145.17 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=112.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhh--CCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCCCEEEeccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSR--YPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRGDAIFLKWM 274 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~D~i~~~~v 274 (370)
.+..+|||||||+|..+..+++. +|+.+++++|. +.+++.++++ .+++++.+|+.+ +.+..|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 46689999999999999998884 68999999998 9999887652 379999999987 5555699999999
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHh-------------hhcCCCcccCHHH
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFML-------------AQTTGGRERSKKE 341 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-------------~~~~~~~~~t~~e 341 (370)
+|++++++...++++++++|+|||.|++.|.+..++...... ....+.+.... .....-...+.++
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 999998888899999999999999999999876554222110 00001111000 0000011248899
Q ss_pred HHHHHHhCCCCcceEE
Q 017495 342 YEALAKNSGFSGLEIV 357 (370)
Q Consensus 342 ~~~ll~~aGf~~v~~~ 357 (370)
..++|++|||+.+...
T Consensus 214 ~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 214 HKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHcCchhHHHH
Confidence 9999999999987643
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.71 E-value=2.8e-16 Score=141.86 Aligned_cols=158 Identities=18% Similarity=0.203 Sum_probs=111.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCCC-C-CEEEe
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVPR-G-DAIFL 271 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p~-~-D~i~~ 271 (370)
...++..+. ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. +++++.+|+.+..+. . |+|++
T Consensus 18 ~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 18 FYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-GVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-CCcEEEcChhhCCCCCCceEEEE
Confidence 345666666 66778999999999999999999999999999999 9999888763 689999998763232 3 99999
Q ss_pred cccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhh---hhhhhH-HhhhcCCCcccCHHHHHHHHH
Q 017495 272 KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIV---FEQDLF-MLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~---~~~d~~-~~~~~~~~~~~t~~e~~~ll~ 347 (370)
..+||++++. ..+|++++++|+|||++++..+.....+......... .+.... ......+....+.+++.++|+
T Consensus 96 ~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (255)
T PRK14103 96 NAALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLT 173 (255)
T ss_pred ehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence 9999998865 6889999999999999998643211110000000000 000000 000001223468999999999
Q ss_pred hCCCCcceE
Q 017495 348 NSGFSGLEI 356 (370)
Q Consensus 348 ~aGf~~v~~ 356 (370)
++||++..+
T Consensus 174 ~aGf~v~~~ 182 (255)
T PRK14103 174 DAGCKVDAW 182 (255)
T ss_pred hCCCeEEEE
Confidence 999985443
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.69 E-value=1.1e-15 Score=143.32 Aligned_cols=151 Identities=20% Similarity=0.169 Sum_probs=110.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC--CEEEeccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG--DAIFLKWM 274 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~--D~i~~~~v 274 (370)
.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 567899999999999999999987 779999998 7777765431 479999999987 66654 99999999
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCC-C-ccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPEN-Q-ASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~-~-~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
+||+++. ..++++++++|||||+|+|.++........ . ........++....... .....+.++|.++++++||.
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHCCCC
Confidence 9999865 689999999999999999998765332111 0 00011111111111110 11235899999999999999
Q ss_pred cceEEecC
Q 017495 353 GLEIVCCA 360 (370)
Q Consensus 353 ~v~~~~~~ 360 (370)
.+++....
T Consensus 273 ~v~~~d~s 280 (340)
T PLN02244 273 DIKTEDWS 280 (340)
T ss_pred eeEeeeCc
Confidence 99887654
No 13
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.67 E-value=2.4e-15 Score=139.09 Aligned_cols=139 Identities=24% Similarity=0.313 Sum_probs=109.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CCCeEEeccCCC-CCCCC--CEEEecccccCCC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWT 279 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~ 279 (370)
+..+|||||||+|..+..+++.++..+++++|. +.+++.+++. .+++++.+|+.+ +++.+ |+|++..++|+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 567999999999999999999888889999998 8888877653 578999999987 55543 9999999999998
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEec
Q 017495 280 DEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 280 d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
+. ..+|++++++|+|||++++.+...++.. ......+.++ ...+.+++.++|+++||+.+++...
T Consensus 193 d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~------~~r~~~~~~~-------~~~t~eEl~~lL~~aGF~~V~i~~i 257 (340)
T PLN02490 193 DP--QRGIKEAYRVLKIGGKACLIGPVHPTFW------LSRFFADVWM-------LFPKEEEYIEWFTKAGFKDVKLKRI 257 (340)
T ss_pred CH--HHHHHHHHHhcCCCcEEEEEEecCcchh------HHHHhhhhhc-------cCCCHHHHHHHHHHCCCeEEEEEEc
Confidence 76 4789999999999999999876543310 0001111111 1247899999999999999998876
Q ss_pred C
Q 017495 360 A 360 (370)
Q Consensus 360 ~ 360 (370)
.
T Consensus 258 ~ 258 (340)
T PLN02490 258 G 258 (340)
T ss_pred C
Confidence 4
No 14
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.66 E-value=7.1e-15 Score=131.28 Aligned_cols=168 Identities=18% Similarity=0.148 Sum_probs=120.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~ 266 (370)
.++..+. ..+..+|||||||+|.++..++..+| ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+
T Consensus 42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 4444444 44568999999999999999999987 789999998 7777665542 468999999987 44433
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHh----hhcCC-------
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFML----AQTTG------- 333 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~------- 333 (370)
|+|++.+++|++++. ..+|+++.++|+|||++++.+...+.... .......+...++ ....+
T Consensus 121 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEAYSY 195 (239)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHHHHH
Confidence 999999999998764 68899999999999999999987654311 0000000000000 00001
Q ss_pred -----CcccCHHHHHHHHHhCCCCcceEEecC-CCeeEEEEeC
Q 017495 334 -----GRERSKKEYEALAKNSGFSGLEIVCCA-YNSWVMEFHK 370 (370)
Q Consensus 334 -----~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~~~~e~~k 370 (370)
...++.++|.++|+++||+.+++.... +-..++.++|
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 196 LAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123478899999999999999999875 5556777765
No 15
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.66 E-value=1.9e-15 Score=129.72 Aligned_cols=146 Identities=22% Similarity=0.247 Sum_probs=110.9
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCC------CeEEEeeh-hhHHHhCCCC---------CCCeEEeccCCC-CCCCC-
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPC------IKGISFDL-PHVLANAPSF---------PGVEHVGGDMFE-NVPRG- 266 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~------~~~~~~D~-p~~~~~a~~~---------~rv~~~~~D~~~-~~p~~- 266 (370)
.....++|||+||||..+..+++..+. .+++++|+ |++++.++++ .++.++++|..+ |+|..
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 335589999999999999999999877 78999998 9998876542 359999999999 99875
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhc---CCC--------
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQT---TGG-------- 334 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~-------- 334 (370)
|.|++.+-+.++++. .+.|++++|+|||||++.+.|+..-++.. ..+++..+.+..+... ..|
T Consensus 178 ~D~yTiafGIRN~th~--~k~l~EAYRVLKpGGrf~cLeFskv~~~~---l~~fy~~ysf~VlpvlG~~iagd~~sYqYL 252 (296)
T KOG1540|consen 178 FDAYTIAFGIRNVTHI--QKALREAYRVLKPGGRFSCLEFSKVENEP---LKWFYDQYSFDVLPVLGEIIAGDRKSYQYL 252 (296)
T ss_pred ceeEEEecceecCCCH--HHHHHHHHHhcCCCcEEEEEEccccccHH---HHHHHHhhhhhhhchhhHhhhhhHhhhhhH
Confidence 999999999999976 58899999999999999999986654211 1111111111111000 001
Q ss_pred -----cccCHHHHHHHHHhCCCCcce
Q 017495 335 -----RERSKKEYEALAKNSGFSGLE 355 (370)
Q Consensus 335 -----~~~t~~e~~~ll~~aGf~~v~ 355 (370)
+..+.+++..+.++|||+.+.
T Consensus 253 veSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 253 VESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 123789999999999999987
No 16
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.63 E-value=5.3e-15 Score=145.44 Aligned_cols=151 Identities=19% Similarity=0.238 Sum_probs=116.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC--
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG-- 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~-- 266 (370)
..+++.+. .++..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++. .++++..+|+.+ ++|..
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 44566555 6677899999999999999998876 779999998 7888776432 478999999987 56653
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
|+|++..+++|+++. ..+|++++++|+|||+|++.+.......... . .... .. ..+...++.+++.+++
T Consensus 334 D~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---~---~~~~--~~-~~g~~~~~~~~~~~~l 402 (475)
T PLN02336 334 DVIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSP---E---FAEY--IK-QRGYDLHDVQAYGQML 402 (475)
T ss_pred EEEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcH---H---HHHH--HH-hcCCCCCCHHHHHHHH
Confidence 999999999999865 5899999999999999999998765421111 1 1111 11 1244567899999999
Q ss_pred HhCCCCcceEEec
Q 017495 347 KNSGFSGLEIVCC 359 (370)
Q Consensus 347 ~~aGf~~v~~~~~ 359 (370)
+++||+++.+...
T Consensus 403 ~~aGF~~i~~~d~ 415 (475)
T PLN02336 403 KDAGFDDVIAEDR 415 (475)
T ss_pred HHCCCeeeeeecc
Confidence 9999999876553
No 17
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.62 E-value=3e-15 Score=125.23 Aligned_cols=136 Identities=20% Similarity=0.147 Sum_probs=97.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCC-C-CEEEecccccCCCh
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPR-G-DAIFLKWMLHGWTD 280 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~-~-D~i~~~~vLh~~~d 280 (370)
..+..+|||||||+|.++..+.+... +++++|+ +.+++. ..+.....+... ..+. . |+|++..+|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 45678999999999999999976533 9999998 777776 234444443333 2333 3 99999999999995
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhh-cCCCcccCHHHHHHHHHhCCCCcce
Q 017495 281 EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQ-TTGGRERSKKEYEALAKNSGFSGLE 355 (370)
Q Consensus 281 ~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~t~~e~~~ll~~aGf~~v~ 355 (370)
...+|+++++.|||||++++.++..... .........+... ..+...++.++|.++++++||++++
T Consensus 94 --~~~~l~~l~~~LkpgG~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 --PEEFLKELSRLLKPGGYLVISDPNRDDP-------SPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp --HHHHHHHHHHCEEEEEEEEEEEEBTTSH-------HHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEEcCCcch-------hhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 4799999999999999999999876421 0001111111110 0244667999999999999999875
No 18
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.62 E-value=3e-14 Score=125.81 Aligned_cols=165 Identities=18% Similarity=0.197 Sum_probs=119.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC----CCCeEEeccCCC-CCCCC--C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF----PGVEHVGGDMFE-NVPRG--D 267 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~-~~p~~--D 267 (370)
.++..+. ..+..+|||+|||+|..+..+++.+|. .+++++|. +.+++.+++. .+++++.+|+.+ +.+.+ |
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 3444443 446789999999999999999999987 78999998 7777665542 468999999987 55443 9
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhh---c----C-C------
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQ---T----T-G------ 333 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~---~----~-~------ 333 (370)
+|++.+++|+.++ ...+|+++++.|+|||++++.+...+.... .....+..+... . . .
T Consensus 109 ~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (223)
T TIGR01934 109 AVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANAL------LKKFYKFYLKNVLPSIGGLISKNAEAYTY 180 (223)
T ss_pred EEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCchh------hHHHHHHHHHHhhhhhhhhhcCCchhhHH
Confidence 9999999998775 468999999999999999999886543210 111111111000 0 0 0
Q ss_pred -----CcccCHHHHHHHHHhCCCCcceEEecCCCe-eEEEEeC
Q 017495 334 -----GRERSKKEYEALAKNSGFSGLEIVCCAYNS-WVMEFHK 370 (370)
Q Consensus 334 -----~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~-~~~e~~k 370 (370)
....+.++|.++|+++||+.+++.+...+. .+++++|
T Consensus 181 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 181 LPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 112478899999999999999999987664 3666554
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.60 E-value=1.6e-14 Score=134.05 Aligned_cols=144 Identities=15% Similarity=0.056 Sum_probs=104.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC-------CCCCCeEEeccCCC-CCCCC-CEEEeccccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP-------SFPGVEHVGGDMFE-NVPRG-DAIFLKWMLH 276 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~-------~~~rv~~~~~D~~~-~~p~~-D~i~~~~vLh 276 (370)
...+|||||||+|.++..+++..+. +++++|. +.++..++ ...+++++.+|+.+ +.+.. |+|++..+||
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence 4589999999999999999998665 5999997 55443211 12479999999877 55444 9999999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceE
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEI 356 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~ 356 (370)
|..+. ..+|+++++.|+|||.+++.+...+........ ..... . .|. ..-..++.+++.++|+++||+.+++
T Consensus 201 H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~-p~~~y-~-~~~---~~~~lps~~~l~~~L~~aGF~~i~~ 272 (322)
T PRK15068 201 HRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLV-PGDRY-A-KMR---NVYFIPSVPALKNWLERAGFKDVRI 272 (322)
T ss_pred ccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccC-chhHH-h-cCc---cceeCCCHHHHHHHHHHcCCceEEE
Confidence 98765 688999999999999999877665543221100 00000 0 000 0112458999999999999999988
Q ss_pred Eec
Q 017495 357 VCC 359 (370)
Q Consensus 357 ~~~ 359 (370)
...
T Consensus 273 ~~~ 275 (322)
T PRK15068 273 VDV 275 (322)
T ss_pred EeC
Confidence 765
No 20
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.60 E-value=2.6e-14 Score=131.21 Aligned_cols=153 Identities=14% Similarity=0.021 Sum_probs=105.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhC-------CCCCCCeEEeccCCC-CCCCC-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANA-------PSFPGVEHVGGDMFE-NVPRG- 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a-------~~~~rv~~~~~D~~~-~~p~~- 266 (370)
.++..+. ..+..+|||||||+|.++..++...+. .++++|. +.++..+ ....++.+...++.+ +....
T Consensus 112 ~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 112 RVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 3444444 345689999999999999998887653 7899997 6555432 123567888888765 33334
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
|+|++..+|||++++ ..+|++++++|+|||.|++.+...+......... ... .-.|.. .....+.+++.++|
T Consensus 190 D~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p-~~r--y~k~~n---v~flpS~~~L~~~L 261 (314)
T TIGR00452 190 DTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP-KDR--YAKMKN---VYFIPSVSALKNWL 261 (314)
T ss_pred CEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCc-hHH--HHhccc---cccCCCHHHHHHHH
Confidence 999999999998866 6899999999999999999887664321111000 000 000100 11235889999999
Q ss_pred HhCCCCcceEEec
Q 017495 347 KNSGFSGLEIVCC 359 (370)
Q Consensus 347 ~~aGf~~v~~~~~ 359 (370)
+++||+.+++...
T Consensus 262 ~~aGF~~V~i~~~ 274 (314)
T TIGR00452 262 EKVGFENFRILDV 274 (314)
T ss_pred HHCCCeEEEEEec
Confidence 9999999987764
No 21
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.60 E-value=1.2e-14 Score=128.78 Aligned_cols=136 Identities=19% Similarity=0.274 Sum_probs=106.4
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCC-CCCCC-CEEEecccccCC
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFE-NVPRG-DAIFLKWMLHGW 278 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~-~~p~~-D~i~~~~vLh~~ 278 (370)
.+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .++++++..|+.+ +.+.. |+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999998 777776654 2578999999876 45444 999999999998
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEe
Q 017495 279 TDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 279 ~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~ 358 (370)
++. ..+|++++++|+|||++++.+...+...... .. .......+.++|.++++++||++++...
T Consensus 81 ~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--------~~------~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KDK--MDLFSNISRHLKDGGHLVLADFIANLLSAIE--------HE------ETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CCH--HHHHHHHHHHcCCCCEEEEEEcccccCcccc--------cc------ccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 764 6899999999999999999987543210000 00 0012245789999999999999998877
Q ss_pred cC
Q 017495 359 CA 360 (370)
Q Consensus 359 ~~ 360 (370)
..
T Consensus 145 ~~ 146 (224)
T smart00828 145 AS 146 (224)
T ss_pred Cc
Confidence 64
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.60 E-value=2e-14 Score=124.39 Aligned_cols=139 Identities=14% Similarity=0.104 Sum_probs=104.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC-C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG-D 267 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~-D 267 (370)
.+++.+. ..+..+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++. .++++...|+.+ +.+.. |
T Consensus 21 ~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 97 (197)
T PRK11207 21 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYD 97 (197)
T ss_pred HHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcC
Confidence 4455554 445689999999999999999985 568999998 8887766532 458888899876 44444 9
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHH
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 347 (370)
+|++..++|++++++...++++++++|+|||++++.+....++...+. . .....+.+++.++++
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~--------~--------~~~~~~~~el~~~~~ 161 (197)
T PRK11207 98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTV--------G--------FPFAFKEGELRRYYE 161 (197)
T ss_pred EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCC--------C--------CCCccCHHHHHHHhC
Confidence 999999999988888899999999999999998877665443211000 0 011246888999887
Q ss_pred hCCCCcceE
Q 017495 348 NSGFSGLEI 356 (370)
Q Consensus 348 ~aGf~~v~~ 356 (370)
||+++..
T Consensus 162 --~~~~~~~ 168 (197)
T PRK11207 162 --GWEMVKY 168 (197)
T ss_pred --CCeEEEe
Confidence 8987765
No 23
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.59 E-value=1.1e-14 Score=122.11 Aligned_cols=170 Identities=18% Similarity=0.175 Sum_probs=124.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCCCCCC--CCEEE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFENVPR--GDAIF 270 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~~~p~--~D~i~ 270 (370)
..+++..++ .....+|+|+|||+|..+..|++++|+..++++|. ++|++.++.. .+++|..+|+.+-.|+ .|+++
T Consensus 19 a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 19 ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence 456777777 78899999999999999999999999999999998 9999988764 7899999999986664 49999
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhh--hHHhhhcC----CCcccCHHHHHH
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQD--LFMLAQTT----GGRERSKKEYEA 344 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d--~~~~~~~~----~~~~~t~~e~~~ 344 (370)
.+.+||.++|. ..+|.++...|.|||.|.+.= |++...+....+...-+ .+-..... .....+...|-+
T Consensus 98 aNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQm---PdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~ 172 (257)
T COG4106 98 ANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQM---PDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYE 172 (257)
T ss_pred hhhhhhhcccc--HHHHHHHHHhhCCCceEEEEC---CCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHH
Confidence 99999988865 689999999999999999843 33322221100000000 00000110 223458899999
Q ss_pred HHHhCCCCcceE-----EecCCCeeEEEEeC
Q 017495 345 LAKNSGFSGLEI-----VCCAYNSWVMEFHK 370 (370)
Q Consensus 345 ll~~aGf~~v~~-----~~~~~~~~~~e~~k 370 (370)
+|...+=++.-+ +++++...|++++|
T Consensus 173 lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 173 LLAPLACRVDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred HhCcccceeeeeeeeccccCCCccchhhhee
Confidence 999987554332 23357777888876
No 24
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.59 E-value=4.1e-15 Score=137.11 Aligned_cols=145 Identities=11% Similarity=0.051 Sum_probs=104.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCC-C-CEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPR-G-DAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~-~-D~i~~~~vL 275 (370)
...+|||||||+|.++..+++ ++.+++++|. +.+++.++.+ .+++++.+|+.+ +.+. . |+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 456999999999999998886 5679999998 8888877642 368899999876 4443 3 999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC----CcccCHHHHHHHHHhCCC
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG----GRERSKKEYEALAKNSGF 351 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~t~~e~~~ll~~aGf 351 (370)
||++++ ..+|+.++++|||||.+++.+...... .+................+ .+.++++++.++|+++||
T Consensus 209 eHv~d~--~~~L~~l~r~LkPGG~liist~nr~~~----~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf 282 (322)
T PLN02396 209 EHVANP--AEFCKSLSALTIPNGATVLSTINRTMR----AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASV 282 (322)
T ss_pred HhcCCH--HHHHHHHHHHcCCCcEEEEEECCcCHH----HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCC
Confidence 999976 589999999999999999987643210 0000000000001001111 235689999999999999
Q ss_pred CcceEEec
Q 017495 352 SGLEIVCC 359 (370)
Q Consensus 352 ~~v~~~~~ 359 (370)
+++++..+
T Consensus 283 ~i~~~~G~ 290 (322)
T PLN02396 283 DVKEMAGF 290 (322)
T ss_pred eEEEEeee
Confidence 99987554
No 25
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=2.3e-14 Score=127.59 Aligned_cols=156 Identities=21% Similarity=0.168 Sum_probs=127.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~ 266 (370)
.+.+++.+. +.+..+|||||||-|.++...+++| +++++++++ ++..+.+++. +++++...|..+..+..
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 566777777 9999999999999999999999999 899999998 7766665542 47999999987644346
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
|-|++..+++|+..+....+++++++.|+|||++++.....++.... ...++..-..+++|..++.+++.+..
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i~~~~ 211 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEILELA 211 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHHHHHH
Confidence 99999999999999889999999999999999999999887764221 12222233335799999999999999
Q ss_pred HhCCCCcceEEec
Q 017495 347 KNSGFSGLEIVCC 359 (370)
Q Consensus 347 ~~aGf~~v~~~~~ 359 (370)
.++||++..+...
T Consensus 212 ~~~~~~v~~~~~~ 224 (283)
T COG2230 212 SEAGFVVLDVESL 224 (283)
T ss_pred HhcCcEEehHhhh
Confidence 9999999876654
No 26
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.59 E-value=3.6e-15 Score=117.04 Aligned_cols=98 Identities=20% Similarity=0.306 Sum_probs=82.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccC-CC-CCCCC-CEEEecc-c
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDM-FE-NVPRG-DAIFLKW-M 274 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~-~~-~~p~~-D~i~~~~-v 274 (370)
+..+|||||||+|.++..+++.+|+.+++++|. |.+++.+++ .++++++.+|+ .. ..++. |+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 357999999999999999999999999999998 888887654 27899999999 33 33334 9999999 6
Q ss_pred ccCCCh-hHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 275 LHGWTD-EHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 275 Lh~~~d-~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
+|++.+ ++..++|+++++.|+|||+|+|.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 665543 577899999999999999999965
No 27
>PRK08317 hypothetical protein; Provisional
Probab=99.59 E-value=6e-14 Score=125.25 Aligned_cols=157 Identities=19% Similarity=0.257 Sum_probs=111.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC--
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG-- 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~-- 266 (370)
.+...+. ..+..+|||+|||+|.++..+++.+ |..+++++|. +..++.+++. .++++...|+.. +++.+
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 3444455 6778899999999999999999988 7889999998 7777665442 568899999876 55543
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCcc-chhhhhhhhHHhhhcCCCcccCHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQAS-SHIVFEQDLFMLAQTTGGRERSKKEYEAL 345 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 345 (370)
|+|++.+++|++++. ..++++++++|+|||++++.+............ .......... . .......+..+|.++
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~ 163 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFW--S-DHFADPWLGRRLPGL 163 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHH--H-hcCCCCcHHHHHHHH
Confidence 999999999998865 688999999999999999988643211000000 0111111111 1 112234456789999
Q ss_pred HHhCCCCcceEEec
Q 017495 346 AKNSGFSGLEIVCC 359 (370)
Q Consensus 346 l~~aGf~~v~~~~~ 359 (370)
|+++||+.+++...
T Consensus 164 l~~aGf~~~~~~~~ 177 (241)
T PRK08317 164 FREAGLTDIEVEPY 177 (241)
T ss_pred HHHcCCCceeEEEE
Confidence 99999998876543
No 28
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.58 E-value=3.7e-14 Score=129.30 Aligned_cols=146 Identities=23% Similarity=0.291 Sum_probs=110.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC--CEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG--DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~--D~i~~~~ 273 (370)
..+..+|||||||+|..+..+++.. +..+++++|. +.+++.+++. ++++++.+|+.+ +++.+ |+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 5577899999999999888777664 5668999998 8888877642 578999999887 66553 9999999
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCc
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSG 353 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 353 (370)
++|++++. ..+|++++++|||||+|++.+........ .....+..++.. ..+...+.++|.++|+++||..
T Consensus 155 v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGELP------EEIRNDAELYAG-CVAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCCC------HHHHHhHHHHhc-cccCCCCHHHHHHHHHHCCCCc
Confidence 99987754 57899999999999999999987543211 111122222211 1344568899999999999999
Q ss_pred ceEEec
Q 017495 354 LEIVCC 359 (370)
Q Consensus 354 v~~~~~ 359 (370)
+++...
T Consensus 226 v~i~~~ 231 (272)
T PRK11873 226 ITIQPK 231 (272)
T ss_pred eEEEec
Confidence 877543
No 29
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.58 E-value=2.4e-14 Score=129.29 Aligned_cols=160 Identities=15% Similarity=0.076 Sum_probs=110.5
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCCCCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFENVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~~~p~~ 266 (370)
++.+++.+. .++..+|||||||.|.++..+++++ +++++++.+ +...+.+++ .+++++...|+.+..+..
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 556777776 8899999999999999999999998 789999987 655554432 257999999987632344
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
|.|++..++.|+..++...+++++.+.|+|||++++...+..+...... .....++..-..+++|...+.+++...+
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~---~~~~~~~i~kyiFPgg~lps~~~~~~~~ 205 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAE---RRSSSDFIRKYIFPGGYLPSLSEILRAA 205 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHC---TTCCCHHHHHHTSTTS---BHHHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhh---cCCCceEEEEeeCCCCCCCCHHHHHHHH
Confidence 9999999999999888899999999999999999998877655311000 0000122222234688889999999999
Q ss_pred HhCCCCcceEEec
Q 017495 347 KNSGFSGLEIVCC 359 (370)
Q Consensus 347 ~~aGf~~v~~~~~ 359 (370)
+++||++..+...
T Consensus 206 ~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 206 EDAGLEVEDVENL 218 (273)
T ss_dssp HHTT-EEEEEEE-
T ss_pred hcCCEEEEEEEEc
Confidence 9999999888765
No 30
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.56 E-value=3.6e-14 Score=128.05 Aligned_cols=156 Identities=13% Similarity=0.125 Sum_probs=106.6
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC--CCCC-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE--NVPR- 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~--~~p~- 265 (370)
.++..++ .++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 4555443 45679999999999999999985 578999998 8888877642 468999999865 2333
Q ss_pred C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCc-cchhhhh-hhhHH---hhhcCCCcccCH
Q 017495 266 G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQA-SSHIVFE-QDLFM---LAQTTGGRERSK 339 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~-~~~~~~~-~d~~~---~~~~~~~~~~t~ 339 (370)
. |+|++..+||+++++ ..+|+++.++|||||+|++............. ....... ..+.. .... .....++
T Consensus 112 ~fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~ 188 (255)
T PRK11036 112 PVDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLS-PDYPLDP 188 (255)
T ss_pred CCCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCC-CCCCCCH
Confidence 3 999999999998866 58899999999999999987654321000000 0000000 00000 0000 1123578
Q ss_pred HHHHHHHHhCCCCcceEEec
Q 017495 340 KEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 340 ~e~~~ll~~aGf~~v~~~~~ 359 (370)
+++.++|+++||+++.+.-+
T Consensus 189 ~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 189 EQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred HHHHHHHHHCCCeEeeeeeE
Confidence 99999999999999876554
No 31
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.56 E-value=1.2e-13 Score=125.00 Aligned_cols=106 Identities=25% Similarity=0.395 Sum_probs=90.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCCCCC-CC-CEEE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFENVP-RG-DAIF 270 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~~~p-~~-D~i~ 270 (370)
...++..++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. .++.++.+|+.+..+ .. |+|+
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 446666665 67788999999999999999999999999999998 8888887764 578999999876333 23 9999
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
+..++|++++. ..+|++++++|+|||++++.
T Consensus 99 ~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 99 ANASLQWLPDH--LELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EccChhhCCCH--HHHHHHHHHhcCCCcEEEEE
Confidence 99999988765 58999999999999999985
No 32
>PRK06922 hypothetical protein; Provisional
Probab=99.54 E-value=5.2e-14 Score=137.91 Aligned_cols=142 Identities=21% Similarity=0.305 Sum_probs=105.7
Q ss_pred CChhhhccCCchHHHHHHHHHHhchHH--HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHH
Q 017495 167 MTQFEYLGTDPRFNGVFNEAMSNHSAL--VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVL 243 (370)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~m~~~~~~--~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~ 243 (370)
..+|+++...++...+|...|...... ........++ +.+..+|||||||+|..+..+++.+|+.+++++|+ +.++
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML 455 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI 455 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 356777777666666666555432221 1111122233 55678999999999999999999999999999999 7788
Q ss_pred HhCCCC-----CCCeEEeccCCC-C--CCCC--CEEEecccccCC-----------ChhHHHHHHHHHHHhCCCCcEEEE
Q 017495 244 ANAPSF-----PGVEHVGGDMFE-N--VPRG--DAIFLKWMLHGW-----------TDEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 244 ~~a~~~-----~rv~~~~~D~~~-~--~p~~--D~i~~~~vLh~~-----------~d~~~~~iL~~~~~~L~pgG~lli 302 (370)
+.+++. .+++++.+|+.+ + ++.+ |+|+++.++|+| ++++..++|++++++|||||++++
T Consensus 456 e~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 456 DTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred HHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 776542 357888899876 3 4433 999999999976 245778999999999999999999
Q ss_pred EeecCCC
Q 017495 303 VESILPL 309 (370)
Q Consensus 303 ~e~~~~~ 309 (370)
.|.+.++
T Consensus 536 ~D~v~~E 542 (677)
T PRK06922 536 RDGIMTE 542 (677)
T ss_pred EeCccCC
Confidence 9976654
No 33
>PRK05785 hypothetical protein; Provisional
Probab=99.54 E-value=2.7e-13 Score=119.78 Aligned_cols=156 Identities=12% Similarity=0.026 Sum_probs=107.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCCC--CEEEecccccCCChhH
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEH 282 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~ 282 (370)
+..+|||||||||..+..+.+.+ +.+++++|+ +.+++.+++. ..++.+|+.+ ++++. |+|++.++||++++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~- 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI- 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH-
Confidence 46799999999999999999887 679999998 9999988754 3567889887 77664 999999999998865
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCC-------------cccCHHHHHHHHHhC
Q 017495 283 CLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGG-------------RERSKKEYEALAKNS 349 (370)
Q Consensus 283 ~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-------------~~~t~~e~~~ll~~a 349 (370)
.++|++++++||| .+++.|...++.........+....-+..+....++ ...+.+++.++++++
T Consensus 127 -~~~l~e~~RvLkp--~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~ 203 (226)
T PRK05785 127 -EKVIAEFTRVSRK--QVGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKY 203 (226)
T ss_pred -HHHHHHHHHHhcC--ceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6899999999999 344566655442110000001110111111110112 123789999999998
Q ss_pred CCCcceEEecCCCe-eEEEEeC
Q 017495 350 GFSGLEIVCCAYNS-WVMEFHK 370 (370)
Q Consensus 350 Gf~~v~~~~~~~~~-~~~e~~k 370 (370)
| ..++......+. .+..++|
T Consensus 204 ~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 204 A-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred h-CceEEEEccccEEEEEEEee
Confidence 4 767777776444 4666554
No 34
>PRK06202 hypothetical protein; Provisional
Probab=99.52 E-value=4.9e-13 Score=118.97 Aligned_cols=145 Identities=21% Similarity=0.120 Sum_probs=102.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhh----CCCCeEEEeeh-hhHHHhCCCC---CCCeEEeccCCC-CCCC-C-CEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSR----YPCIKGISFDL-PHVLANAPSF---PGVEHVGGDMFE-NVPR-G-DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~D~~~-~~p~-~-D~i~~~~ 273 (370)
.++..+|||||||+|.++..|++. .++.+++++|+ +.+++.+++. .++++...+... +.+. . |+|+++.
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 356789999999999999888764 45679999998 9999887754 456776665544 3333 3 9999999
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhh-----cCC-----CcccCHHHHH
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQ-----TTG-----GRERSKKEYE 343 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~-----~~~~t~~e~~ 343 (370)
+|||+++++...+|++++++++ |.+++.+...+.. .+........... ... ...++.+++.
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~-------~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~ 208 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL-------AYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELA 208 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH-------HHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHH
Confidence 9999998888899999999998 6777776655421 0000011100000 001 1245899999
Q ss_pred HHHHhCCCCcceEEec
Q 017495 344 ALAKNSGFSGLEIVCC 359 (370)
Q Consensus 344 ~ll~~aGf~~v~~~~~ 359 (370)
+++++ ||++....+.
T Consensus 209 ~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 209 ALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHhhC-CCeEEeccce
Confidence 99999 9998877765
No 35
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.52 E-value=9.6e-15 Score=121.25 Aligned_cols=139 Identities=23% Similarity=0.283 Sum_probs=100.0
Q ss_pred CCCCeEEEEcCcccHHHHHHH-hhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC-C--CCCC-CEEEecc
Q 017495 206 DGLKVLVDVGGGIGVTLGMIT-SRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE-N--VPRG-DAIFLKW 273 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~-~--~p~~-D~i~~~~ 273 (370)
++..+|||+|||+|.++..++ +.+|+.+++++|. +.+++.++. .++++|..+|+.+ + ++.. |+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 356899999999999999999 5578999999998 999988775 2579999999998 4 3334 9999999
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCC
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSG 350 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 350 (370)
++|++++. ..+|+++.+.|+|||.+++.+....+........... +....+.....+. ..++|..+|++||
T Consensus 82 ~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPDP--EKVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMN--LYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHH--HHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred chhhccCH--HHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHH--HHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 99998866 5889999999999999999998732210000000000 0011111111111 6788999999998
No 36
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.52 E-value=5.1e-13 Score=120.66 Aligned_cols=101 Identities=22% Similarity=0.253 Sum_probs=83.5
Q ss_pred CCCCCeEEEEcCcccH----HHHHHHhhCC-----CCeEEEeeh-hhHHHhCCCC-------------------------
Q 017495 205 FDGLKVLVDVGGGIGV----TLGMITSRYP-----CIKGISFDL-PHVLANAPSF------------------------- 249 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-p~~~~~a~~~------------------------- 249 (370)
..+..+|+|+|||+|. +++.+.+.++ +.++++.|+ +.+++.|++.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456899999999996 4566666655 578999999 9999877652
Q ss_pred --------CCCeEEeccCCC-CCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 250 --------PGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 250 --------~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.+|+|..+|+.+ +.+.+ |+|+|.++|||+++++..+++++++++|+|||+|++...
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 268999999998 33333 999999999999988888999999999999999998544
No 37
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.52 E-value=2.3e-13 Score=117.57 Aligned_cols=140 Identities=12% Similarity=0.052 Sum_probs=101.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC-CE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG-DA 268 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~-D~ 268 (370)
.+++.+. ..++.+|||+|||+|..+..++++ +.+++++|. +.+++.+++. -.+.+...|+.. +.+.. |+
T Consensus 21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence 4444444 445689999999999999999985 568999998 8888765432 136777778765 33444 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHh
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKN 348 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~ 348 (370)
|++..++|++++++...++++++++|+|||++++.+....+...... +.....+++++.++|.
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~----------------~~~~~~~~~el~~~f~- 160 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHM----------------PFSFTFKEDELRQYYA- 160 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCC----------------CcCccCCHHHHHHHhC-
Confidence 99999999998888889999999999999998887765432211000 0112357889998886
Q ss_pred CCCCcceEE
Q 017495 349 SGFSGLEIV 357 (370)
Q Consensus 349 aGf~~v~~~ 357 (370)
+|+++...
T Consensus 161 -~~~~~~~~ 168 (195)
T TIGR00477 161 -DWELLKYN 168 (195)
T ss_pred -CCeEEEee
Confidence 47777655
No 38
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.50 E-value=5.7e-13 Score=118.93 Aligned_cols=137 Identities=25% Similarity=0.233 Sum_probs=104.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--CCCeEEeccCCC-CCCCC--CEEEecccccCCCh
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--PGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTD 280 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d 280 (370)
.+.+|||||||+|.++..+++.+|..+++++|. +.++..++.. ++++++.+|+.+ +.+.. |+|++.+++|+..+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 457999999999999999999999999999998 7777666543 478999999987 54543 99999999998765
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEe
Q 017495 281 EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 281 ~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~ 358 (370)
. ..+|++++++|+|||.+++.++..... ....... .. .+....+.++|.++++.+ |+.+.+..
T Consensus 114 ~--~~~l~~~~~~L~~~G~l~~~~~~~~~~---------~~~~~~~--~~-~~~~~~~~~~~~~~l~~~-f~~~~~~~ 176 (240)
T TIGR02072 114 L--SQALSELARVLKPGGLLAFSTFGPGTL---------HELRQSF--GQ-HGLRYLSLDELKALLKNS-FELLTLEE 176 (240)
T ss_pred H--HHHHHHHHHHcCCCcEEEEEeCCccCH---------HHHHHHH--HH-hccCCCCHHHHHHHHHHh-cCCcEEEE
Confidence 4 689999999999999999987643321 1111111 00 134456889999999998 88776543
No 39
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.49 E-value=5.9e-14 Score=106.32 Aligned_cols=88 Identities=24% Similarity=0.391 Sum_probs=75.3
Q ss_pred EEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CCCeEEeccCCC-CCCCC--CEEEecccccCCChhHHH
Q 017495 212 VDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEHCL 284 (370)
Q Consensus 212 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~~~ 284 (370)
||+|||+|..+..+++. +..+++++|. +.+++.+++. .++.++.+|+.+ +++.. |+|++.+++|+++ +..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~--~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE--DPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS--HHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc--CHH
Confidence 89999999999999998 8899999998 7777776643 456799999988 77765 9999999999984 557
Q ss_pred HHHHHHHHhCCCCcEEEE
Q 017495 285 KLLKNCWEALPENGKVII 302 (370)
Q Consensus 285 ~iL~~~~~~L~pgG~lli 302 (370)
+++++++++|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 40
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.48 E-value=9.8e-13 Score=116.00 Aligned_cols=157 Identities=14% Similarity=0.025 Sum_probs=106.4
Q ss_pred HHHHHHhhcC-CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC
Q 017495 195 MNKILDVYRG-FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR 265 (370)
Q Consensus 195 ~~~l~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~ 265 (370)
...++..+.. ..+..+|||||||+|.++..+++. +.+++++|. +.+++.+++. .++.+..+|+.+....
T Consensus 42 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 119 (219)
T TIGR02021 42 RRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGE 119 (219)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCC
Confidence 3344443331 345789999999999999999875 458999998 8888877642 3789999998763333
Q ss_pred CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhh--hcCCCcccCHHHHH
Q 017495 266 GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLA--QTTGGRERSKKEYE 343 (370)
Q Consensus 266 ~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~t~~e~~ 343 (370)
.|+|++..+++|+++++...+++++.+.+++++.+.+.. .. . .......+...... ....-..++.+++.
T Consensus 120 fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~----~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
T TIGR02021 120 FDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP----KT---A-WLAFLKMIGELFPGSSRATSAYLHPMTDLE 191 (219)
T ss_pred cCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC----Cc---h-HHHHHHHHHhhCcCcccccceEEecHHHHH
Confidence 499999999999988778899999999998765554421 11 0 00011111100000 00112345899999
Q ss_pred HHHHhCCCCcceEEecCC
Q 017495 344 ALAKNSGFSGLEIVCCAY 361 (370)
Q Consensus 344 ~ll~~aGf~~v~~~~~~~ 361 (370)
++++++||+++.......
T Consensus 192 ~~l~~~Gf~v~~~~~~~~ 209 (219)
T TIGR02021 192 RALGELGWKIVREGLVST 209 (219)
T ss_pred HHHHHcCceeeeeecccc
Confidence 999999999998876543
No 41
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.47 E-value=2e-12 Score=116.44 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=105.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCC-CCCCC--CEE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFE-NVPRG--DAI 269 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~-~~p~~--D~i 269 (370)
...++..++ ..+..+|||+|||+|.++..+.+. +.+++++|+ +.+++.+++. ..+.++.+|+.. +++.. |+|
T Consensus 31 a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 31 ADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 445555555 445689999999999999888763 578999998 8898887764 346789999987 66654 999
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhh--hcCCCcccCHHHHHHHHH
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLA--QTTGGRERSKKEYEALAK 347 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~t~~e~~~ll~ 347 (370)
++...+|+.++. ..+|++++++|+|||.+++..+....- ......+... ........+.++|.+++.
T Consensus 108 ~s~~~l~~~~d~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~---------~el~~~~~~~~~~~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 108 WSNLAVQWCGNL--STALRELYRVVRPGGVVAFTTLVQGSL---------PELHQAWQAVDERPHANRFLPPDAIEQALN 176 (251)
T ss_pred EECchhhhcCCH--HHHHHHHHHHcCCCeEEEEEeCCCCch---------HHHHHHHHHhccCCccccCCCHHHHHHHHH
Confidence 999999976654 689999999999999999987654321 0111111100 001233468899999999
Q ss_pred hCCCCc
Q 017495 348 NSGFSG 353 (370)
Q Consensus 348 ~aGf~~ 353 (370)
..|++.
T Consensus 177 ~~~~~~ 182 (251)
T PRK10258 177 GWRYQH 182 (251)
T ss_pred hCCcee
Confidence 988864
No 42
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.47 E-value=3e-12 Score=108.70 Aligned_cols=158 Identities=19% Similarity=0.137 Sum_probs=117.4
Q ss_pred eEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhH----HHhCCC--CCCC-eEEeccCCCC-CC---------CC-CEEE
Q 017495 210 VLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHV----LANAPS--FPGV-EHVGGDMFEN-VP---------RG-DAIF 270 (370)
Q Consensus 210 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~----~~~a~~--~~rv-~~~~~D~~~~-~p---------~~-D~i~ 270 (370)
+|||||+|||..+.++++.+|.+...--|. +.. .....+ .+++ .-+..|+.++ ++ .. |.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 599999999999999999999998865554 222 111111 1222 2345565552 22 13 9999
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCC
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSG 350 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 350 (370)
+.+++|-.+-..+..+++.+.++|+|||.|++..+...++.-.+ .-...+|...-..-+....|..+++.++.+++|
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999876642221 122344444433224566889999999999999
Q ss_pred CCcceEEecCCCeeEEEEeC
Q 017495 351 FSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 351 f~~v~~~~~~~~~~~~e~~k 370 (370)
|+.++.+.++...-+++++|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 99999999998888888876
No 43
>PRK04266 fibrillarin; Provisional
Probab=99.46 E-value=3.6e-12 Score=112.05 Aligned_cols=143 Identities=13% Similarity=0.090 Sum_probs=98.2
Q ss_pred hhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHH----hCCCCCCCeEEeccCCCC-----CCCC-CEE
Q 017495 201 VYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLA----NAPSFPGVEHVGGDMFEN-----VPRG-DAI 269 (370)
Q Consensus 201 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~----~a~~~~rv~~~~~D~~~~-----~p~~-D~i 269 (370)
.++ .++..+|||+|||+|.++..+++..+..+++++|. +.+++ .+++..++.++.+|...+ .++. |+|
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 344 67788999999999999999999887668999998 76655 444446799999998653 1233 888
Q ss_pred EecccccCCChh-HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHh
Q 017495 270 FLKWMLHGWTDE-HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKN 348 (370)
Q Consensus 270 ~~~~vLh~~~d~-~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~ 348 (370)
++ +.+++ +...+|+++++.|||||+|+|.=...+-+ +.. ... +..++..+++++
T Consensus 146 ~~-----d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d--------------~~~-----~~~-~~~~~~~~~l~~ 200 (226)
T PRK04266 146 YQ-----DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSID--------------VTK-----DPK-EIFKEEIRKLEE 200 (226)
T ss_pred EE-----CCCChhHHHHHHHHHHHhcCCCcEEEEEEeccccc--------------CcC-----CHH-HHHHHHHHHHHH
Confidence 73 34333 33467899999999999999942111100 000 000 112345699999
Q ss_pred CCCCcceEEecCC---CeeEEEEe
Q 017495 349 SGFSGLEIVCCAY---NSWVMEFH 369 (370)
Q Consensus 349 aGf~~v~~~~~~~---~~~~~e~~ 369 (370)
+||+.+++..... ++..+.++
T Consensus 201 aGF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 201 GGFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred cCCeEEEEEcCCCCcCCeEEEEEE
Confidence 9999999888753 36655554
No 44
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.46 E-value=1.1e-12 Score=112.76 Aligned_cols=125 Identities=19% Similarity=0.257 Sum_probs=96.6
Q ss_pred HhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCCC-CEEEe
Q 017495 200 DVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPRG-DAIFL 271 (370)
Q Consensus 200 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~~-D~i~~ 271 (370)
..+. ..+..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++ .+++++.+|.....+.. |+|++
T Consensus 25 ~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~ 103 (187)
T PRK08287 25 SKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFI 103 (187)
T ss_pred HhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEE
Confidence 4444 56778999999999999999999999999999998 8887776542 46889999876544444 99999
Q ss_pred cccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCC
Q 017495 272 KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGF 351 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf 351 (370)
....++ ...+++.+.+.|+|||++++.....+ +.+++.+++++.||
T Consensus 104 ~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~~-----------------------------~~~~~~~~l~~~g~ 149 (187)
T PRK08287 104 GGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILLE-----------------------------NLHSALAHLEKCGV 149 (187)
T ss_pred CCCccC-----HHHHHHHHHHhcCCCeEEEEEEecHh-----------------------------hHHHHHHHHHHCCC
Confidence 776543 34689999999999999988443211 24577789999999
Q ss_pred CcceEEec
Q 017495 352 SGLEIVCC 359 (370)
Q Consensus 352 ~~v~~~~~ 359 (370)
+.++++..
T Consensus 150 ~~~~~~~~ 157 (187)
T PRK08287 150 SELDCVQL 157 (187)
T ss_pred CcceEEEE
Confidence 88776554
No 45
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.46 E-value=3e-14 Score=109.29 Aligned_cols=87 Identities=23% Similarity=0.360 Sum_probs=59.3
Q ss_pred EEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CC---CeEEeccCCCCCC-CC-CEEEecccccCCC
Q 017495 212 VDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PG---VEHVGGDMFENVP-RG-DAIFLKWMLHGWT 279 (370)
Q Consensus 212 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~r---v~~~~~D~~~~~p-~~-D~i~~~~vLh~~~ 279 (370)
||||||+|.++..+++.+|..+++++|+ +.+++.++++ .. +++...|.....+ +. |+|++.++|||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999998 9999877764 12 3333344333222 23 9999999999994
Q ss_pred hhHHHHHHHHHHHhCCCCcEE
Q 017495 280 DEHCLKLLKNCWEALPENGKV 300 (370)
Q Consensus 280 d~~~~~iL~~~~~~L~pgG~l 300 (370)
+...+|+++++.|+|||+|
T Consensus 81 --~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 --DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TSS-EE
T ss_pred --hHHHHHHHHHHHcCCCCCC
Confidence 4579999999999999986
No 46
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.45 E-value=1.1e-12 Score=113.92 Aligned_cols=103 Identities=16% Similarity=0.339 Sum_probs=89.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCCCCCCC--CEEEecccccCCCh
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFENVPRG--DAIFLKWMLHGWTD 280 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~~~p~~--D~i~~~~vLh~~~d 280 (370)
..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++. .++++..+|+.++++.. |+|++..+|||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 44677999999999999999999889999999998 8999988763 67889999988866553 99999999999988
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 281 EHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 281 ~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
++..++++++++++ +++++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 88889999999998 5789998886544
No 47
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.44 E-value=2.5e-13 Score=117.55 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=104.5
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------C----CCeEEeccCCCCCCCCCEEEeccc
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------P----GVEHVGGDMFENVPRGDAIFLKWM 274 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~----rv~~~~~D~~~~~p~~D~i~~~~v 274 (370)
.++|||||||+|.++..|++. +..++++|. +++++.|+++ . |+++.+.|.....+..|+|++..+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 378999999999999999985 478999998 8888888753 2 366777777665555699999999
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhh-hHHhhhcCC----CcccCHHHHHHHHHhC
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQD-LFMLAQTTG----GRERSKKEYEALAKNS 349 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~----~~~~t~~e~~~ll~~a 349 (370)
+||..|+ ..+++.+.+.|+|+|.|+|.+....-..- ....+++ ........| .+..++++...+++.+
T Consensus 168 leHV~dp--~~~l~~l~~~lkP~G~lfittinrt~lS~-----~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~ 240 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLKPNGRLFITTINRTILSF-----AGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNAN 240 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhCCCCceEeeehhhhHHHh-----hccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhc
Confidence 9998766 68999999999999999998875532100 0111111 111111112 2345899999999999
Q ss_pred CCCcceEEec
Q 017495 350 GFSGLEIVCC 359 (370)
Q Consensus 350 Gf~~v~~~~~ 359 (370)
|+.+..+.-.
T Consensus 241 ~~~v~~v~G~ 250 (282)
T KOG1270|consen 241 GAQVNDVVGE 250 (282)
T ss_pred Ccchhhhhcc
Confidence 9988776543
No 48
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.44 E-value=2.8e-12 Score=121.71 Aligned_cols=155 Identities=12% Similarity=0.001 Sum_probs=113.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CCCeEEeccCCCCCCCCCEEE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PGVEHVGGDMFENVPRGDAIF 270 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~D~~~~~p~~D~i~ 270 (370)
...+++.+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ..+++...|+.+.....|+|+
T Consensus 156 ~~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 156 LDLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEE
Confidence 345556665 6778899999999999999998876 579999998 8888877643 247778888754312239999
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCC
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSG 350 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 350 (370)
+..+++|.++.+...+++.++++|||||++++.+...+...... ..+++- .. ++++...+.+++.+.++ .|
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~--yi-fp~g~lps~~~i~~~~~-~~ 304 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINK--YI-FPNGCLPSVRQIAQASE-GL 304 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCcee--ee-cCCCcCCCHHHHHHHHH-CC
Confidence 99999999877778999999999999999999887654321111 011111 11 25777788899888866 58
Q ss_pred CCcceEEecC
Q 017495 351 FSGLEIVCCA 360 (370)
Q Consensus 351 f~~v~~~~~~ 360 (370)
|.+.++...+
T Consensus 305 ~~v~d~~~~~ 314 (383)
T PRK11705 305 FVMEDWHNFG 314 (383)
T ss_pred cEEEEEecCh
Confidence 9888776543
No 49
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.43 E-value=1.7e-12 Score=127.72 Aligned_cols=144 Identities=21% Similarity=0.293 Sum_probs=109.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCC---CCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFE---NVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~---~~p~~ 266 (370)
...++..++ ..+..+|||||||+|.++..+++.+ .+++++|. +.+++.++. ..+++++.+|+.. ++|..
T Consensus 26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 345555555 4456799999999999999999874 47899998 888876542 2568999999964 34543
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
|+|++..++||+++++...+|+++++.|+|||++++.|.+........ . . ......++...|.+
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~------~------~--~~~~~~~~~~~~~~ 168 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK------R------K--NNPTHYREPRFYTK 168 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc------c------c--CCCCeecChHHHHH
Confidence 999999999999998888999999999999999999997654321100 0 0 01223356889999
Q ss_pred HHHhCCCCcce
Q 017495 345 LAKNSGFSGLE 355 (370)
Q Consensus 345 ll~~aGf~~v~ 355 (370)
++.++||....
T Consensus 169 ~f~~~~~~~~~ 179 (475)
T PLN02336 169 VFKECHTRDED 179 (475)
T ss_pred HHHHheeccCC
Confidence 99999998764
No 50
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.43 E-value=1.4e-12 Score=108.76 Aligned_cols=177 Identities=17% Similarity=0.172 Sum_probs=117.6
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCC
Q 017495 180 NGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGV 252 (370)
Q Consensus 180 ~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv 252 (370)
...|++-|.++....+..+-. +.+.+....||+||||||..-..+ .--|..++|.+|. |.+.+.+.+ ...+
T Consensus 50 t~~yne~~~~ykrelFs~i~~-~~gk~~K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 50 TSIYNEIADSYKRELFSGIYY-FLGKSGKGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHHHHhhhHH-HhcccCccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccCcce
Confidence 345666676665544444432 322445678899999999876433 2337889999997 777665543 2456
Q ss_pred e-EEeccCCC-C-CCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHH
Q 017495 253 E-HVGGDMFE-N-VPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFM 327 (370)
Q Consensus 253 ~-~~~~D~~~-~-~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~ 327 (370)
. |+.++..+ + .+++ |+|++..+|+-..+ ..+.|++++++|+|||+++++|++..+...-. ...+...+...
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~--~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n--~i~q~v~ep~~ 203 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLCSVED--PVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWN--RILQQVAEPLW 203 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEeccCC--HHHHHHHHHHhcCCCcEEEEEecccccchHHH--HHHHHHhchhh
Confidence 5 88888877 4 4554 99999999987554 47999999999999999999999876532110 11122222211
Q ss_pred hhhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCee
Q 017495 328 LAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSW 364 (370)
Q Consensus 328 ~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~ 364 (370)
... ..|...+.+.| +.|++|-|+.++..+...+..
T Consensus 204 ~~~-~dGC~ltrd~~-e~Leda~f~~~~~kr~~~~tt 238 (252)
T KOG4300|consen 204 HLE-SDGCVLTRDTG-ELLEDAEFSIDSCKRFNFGTT 238 (252)
T ss_pred hee-ccceEEehhHH-HHhhhcccccchhhcccCCce
Confidence 111 24555676666 667889999998777654444
No 51
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.42 E-value=2.3e-12 Score=118.16 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=99.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC-CEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG-DAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~-D~i~~~~vLh~ 277 (370)
.++.+|||||||+|..+..+++. +.+++++|. +.+++.+++. -++++...|+.. ..++. |+|++..+||+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhh
Confidence 34569999999999999999884 579999998 7877765432 257888888876 34444 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~ 357 (370)
+++++...+|++++++|+|||+++++.....+....+ .+.....+.+++.++++. |+++...
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~----------------~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP----------------MPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC----------------CCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 9888889999999999999999888766543321100 011223568899999874 8887764
No 52
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.42 E-value=8.3e-13 Score=112.84 Aligned_cols=146 Identities=18% Similarity=0.215 Sum_probs=107.9
Q ss_pred CeEEEEcCcccHHHHHHHhhCCC--CeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCC-----CCCC--CEEEecc
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPC--IKGISFDL-PHVLANAPSF-----PGVEHVGGDMFEN-----VPRG--DAIFLKW 273 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~-----~p~~--D~i~~~~ 273 (370)
.+||+||||.|.....+++..|+ +++..+|. |..++..++. .++.....|+..+ .+.+ |+|++.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 48999999999999999999988 89999998 9888887764 4566666666552 2233 9999999
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCc---ccCHHHHHHHHHhCC
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGR---ERSKKEYEALAKNSG 350 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~t~~e~~~ll~~aG 350 (370)
+|...+++....++++++++|||||.|++.|....+-..... .....++....+.. .|. ..+.+++.+++.+||
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF--~~~~~i~~nfYVRg-DGT~~YfF~~eeL~~~f~~ag 229 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF--KKGQCISENFYVRG-DGTRAYFFTEEELDELFTKAG 229 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc--cCCceeecceEEcc-CCceeeeccHHHHHHHHHhcc
Confidence 999999999999999999999999999999987654200000 00011111111111 222 348999999999999
Q ss_pred CCcceEE
Q 017495 351 FSGLEIV 357 (370)
Q Consensus 351 f~~v~~~ 357 (370)
|..++..
T Consensus 230 f~~~~~~ 236 (264)
T KOG2361|consen 230 FEEVQLE 236 (264)
T ss_pred cchhccc
Confidence 9988753
No 53
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.41 E-value=5.4e-12 Score=107.63 Aligned_cols=133 Identities=18% Similarity=0.178 Sum_probs=103.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCCC-CEEEecccccCCC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPRG-DAIFLKWMLHGWT 279 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~~-D~i~~~~vLh~~~ 279 (370)
+..+|||+|||+|.++..+.+..+ +++++|+ |.+++.++++ -+++++.+|..+..+.. |+|+++..+|+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 457899999999999999999776 8999998 8888776642 35788899987633334 9999988877665
Q ss_pred hh-------------------HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHH
Q 017495 280 DE-------------------HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKK 340 (370)
Q Consensus 280 d~-------------------~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 340 (370)
++ -...+|+.+.++|+|||++++.+.... ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~~ 147 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GEP 147 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------ChH
Confidence 32 135789999999999999999775321 145
Q ss_pred HHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 341 EYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 341 e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
++.++++++||+...+...+...--+++||
T Consensus 148 ~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 148 DTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred HHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 788999999999988888777766666665
No 54
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.40 E-value=7.4e-12 Score=111.22 Aligned_cols=144 Identities=15% Similarity=0.062 Sum_probs=99.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCCCEEEeccccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRGDAIFLKWMLH 276 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~D~i~~~~vLh 276 (370)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. +++.+..+|+.......|+|++..++|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhh
Confidence 3456799999999999999999864 46999998 8887776542 478999999433322239999999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhh-----cCCCcccCHHHHHHHHHhCCC
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQ-----TTGGRERSKKEYEALAKNSGF 351 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~~~~t~~e~~~ll~~aGf 351 (370)
|+++++...+++++.+.+++++.+.+ .. .. . ...........+ .......+.++|.++++++||
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i~~-~~---~~---~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 207 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIFTF-AP---YT---P----LLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGF 207 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEEEE-CC---cc---H----HHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCC
Confidence 99988888999999998754443332 11 11 0 001111110000 012234578999999999999
Q ss_pred CcceEEecCC
Q 017495 352 SGLEIVCCAY 361 (370)
Q Consensus 352 ~~v~~~~~~~ 361 (370)
++..+.+...
T Consensus 208 ~~~~~~~~~~ 217 (230)
T PRK07580 208 KVVRTERISS 217 (230)
T ss_pred ceEeeeeccc
Confidence 9999887653
No 55
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.39 E-value=2.9e-13 Score=104.15 Aligned_cols=88 Identities=27% Similarity=0.424 Sum_probs=73.1
Q ss_pred EEEEcCcccHHHHHHHhhC---CCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC--CEEEec-ccccC
Q 017495 211 LVDVGGGIGVTLGMITSRY---PCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG--DAIFLK-WMLHG 277 (370)
Q Consensus 211 vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~--D~i~~~-~vLh~ 277 (370)
|||+|||+|..+..+.+.+ |..+++++|+ +.+++.+++. .++++++.|+.+ ++..+ |+|++. .++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5689999998 8888877643 478999999987 54443 999995 55999
Q ss_pred CChhHHHHHHHHHHHhCCCCc
Q 017495 278 WTDEHCLKLLKNCWEALPENG 298 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG 298 (370)
+++++..++|+++.++|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998
No 56
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.39 E-value=2.6e-13 Score=116.74 Aligned_cols=143 Identities=12% Similarity=0.067 Sum_probs=102.2
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CC--CeEEeccCCC-CCC--CCCEEEecccccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PG--VEHVGGDMFE-NVP--RGDAIFLKWMLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~r--v~~~~~D~~~-~~p--~~D~i~~~~vLh~ 277 (370)
...+|||||||.|.++..+++.. .+++++|. +..++.++.+ +. +++.+...++ ... ..|+|+|-.+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 56899999999999999999964 89999998 8888888754 22 3455555554 222 2399999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhh-hHHhhhcCC-----CcccCHHHHHHHHHhCCC
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQD-LFMLAQTTG-----GRERSKKEYEALAKNSGF 351 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~-----~~~~t~~e~~~ll~~aGf 351 (370)
.++++ .+++.|.+.+||||.+++.+....-. ......+. -..+.+.+. .+...++|+..++.++|+
T Consensus 137 v~dp~--~~~~~c~~lvkP~G~lf~STinrt~k------a~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~ 208 (243)
T COG2227 137 VPDPE--SFLRACAKLVKPGGILFLSTINRTLK------AYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANL 208 (243)
T ss_pred cCCHH--HHHHHHHHHcCCCcEEEEeccccCHH------HHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence 99884 69999999999999999988764321 01111111 001111122 234578999999999999
Q ss_pred CcceEEec
Q 017495 352 SGLEIVCC 359 (370)
Q Consensus 352 ~~v~~~~~ 359 (370)
.+.....+
T Consensus 209 ~~~~~~g~ 216 (243)
T COG2227 209 KIIDRKGL 216 (243)
T ss_pred eEEeecce
Confidence 88776554
No 57
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.37 E-value=4.7e-12 Score=116.83 Aligned_cols=97 Identities=18% Similarity=0.278 Sum_probs=79.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-----C--CCeEEeccCCCC--CCC-----C-CEE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-----P--GVEHVGGDMFEN--VPR-----G-DAI 269 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-----~--rv~~~~~D~~~~--~p~-----~-D~i 269 (370)
+..+|||+|||+|..+..|++.++ ..+++++|+ +++++.+++. + +|.++++|+.+. .+. . .++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 557899999999999999999987 689999998 8887666432 2 356789999862 222 2 356
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
++...++++++++...+|++++++|+|||.++|.
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 6678999999999999999999999999999973
No 58
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.34 E-value=2.5e-11 Score=114.07 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=84.5
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---------CCCeEEeccCCCCCCC-C
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---------PGVEHVGGDMFENVPR-G 266 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---------~rv~~~~~D~~~~~p~-~ 266 (370)
++..++ .....+|||+|||+|..+..+++++|..+++++|. +.+++.++++ .++++...|..+..+. .
T Consensus 220 lL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~ 298 (378)
T PRK15001 220 FMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFR 298 (378)
T ss_pred HHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCC
Confidence 455555 33346999999999999999999999999999998 7888777642 2678999998875543 3
Q ss_pred -CEEEeccccc---CCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 267 -DAIFLKWMLH---GWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 267 -D~i~~~~vLh---~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
|+|+++--+| .+++....++++.++++|+|||.|+++-
T Consensus 299 fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 299 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 9999965544 3555666799999999999999999974
No 59
>PLN03075 nicotianamine synthase; Provisional
Probab=99.34 E-value=6.4e-12 Score=113.39 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=80.2
Q ss_pred CCCCeEEEEcCcccHHHH--HHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCCCCC--CC-CEEEe
Q 017495 206 DGLKVLVDVGGGIGVTLG--MITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFENVP--RG-DAIFL 271 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~--~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~~~p--~~-D~i~~ 271 (370)
.++.+|+|||||.|.++. .+...+|+.+++++|. +++++.+++. ++++|+.+|..+..+ .. |+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 377999999999884433 3445689999999998 8888876642 579999999987332 23 99999
Q ss_pred cccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 272 KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
. +||+|+.++..++|+++++.|+|||.|++.-
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 9999977777899999999999999999854
No 60
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.33 E-value=3.3e-12 Score=107.04 Aligned_cols=135 Identities=24% Similarity=0.294 Sum_probs=96.7
Q ss_pred hhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCCCCCCC--CEEEecc
Q 017495 201 VYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFENVPRG--DAIFLKW 273 (370)
Q Consensus 201 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~~~p~~--D~i~~~~ 273 (370)
.++ -....+++|+|||.|.++..|+.+. -+.+++|. +..++.+++ .++|+++..|+.+..|++ |+|+++.
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 355 5566899999999999999999875 46888998 888888764 378999999998877765 9999999
Q ss_pred cccCCCh-hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 274 MLHGWTD-EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 274 vLh~~~d-~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
++|++++ ++...+++++.++|+|||.|++...... .... + |.....+.+.++|++. |.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~------------~c~~-----w---gh~~ga~tv~~~~~~~-~~ 173 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA------------NCRR-----W---GHAAGAETVLEMLQEH-LT 173 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH------------HHHH-----T---T-S--HHHHHHHHHHH-SE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC------------cccc-----c---CcccchHHHHHHHHHH-hh
Confidence 9999986 5788999999999999999999776310 1111 1 1222467788888874 66
Q ss_pred cceEEec
Q 017495 353 GLEIVCC 359 (370)
Q Consensus 353 ~v~~~~~ 359 (370)
.++.+.+
T Consensus 174 ~~~~~~~ 180 (201)
T PF05401_consen 174 EVERVEC 180 (201)
T ss_dssp EEEEEEE
T ss_pred heeEEEE
Confidence 6665555
No 61
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.33 E-value=1.4e-11 Score=109.77 Aligned_cols=146 Identities=14% Similarity=0.061 Sum_probs=98.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-C-CC-CC-CEEEeccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-N-VP-RG-DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~-~p-~~-D~i~~~~v 274 (370)
..+..+|||||||+|.++..+.+. ..+++++|. +..++.+++. .++++...|+.+ + .+ .. |+|++.++
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 346789999999999999988875 467899998 7777665532 346777777665 2 12 23 99999999
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhc----CCCcccCHHHHHHHHHhCC
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQT----TGGRERSKKEYEALAKNSG 350 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~t~~e~~~ll~~aG 350 (370)
+++.++. ..+|+++.+.|+|||.+++....... .................. ......+.++|.++++++|
T Consensus 124 l~~~~~~--~~~l~~~~~~L~~gG~l~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 197 (233)
T PRK05134 124 LEHVPDP--ASFVRACAKLVKPGGLVFFSTLNRNL----KSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAG 197 (233)
T ss_pred hhccCCH--HHHHHHHHHHcCCCcEEEEEecCCCh----HHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCC
Confidence 9998765 57899999999999999987653211 000000000000000000 0123458899999999999
Q ss_pred CCcceEEe
Q 017495 351 FSGLEIVC 358 (370)
Q Consensus 351 f~~v~~~~ 358 (370)
|+++....
T Consensus 198 f~~v~~~~ 205 (233)
T PRK05134 198 LEVQDITG 205 (233)
T ss_pred CeEeeeee
Confidence 99987754
No 62
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.32 E-value=3.1e-11 Score=111.14 Aligned_cols=149 Identities=14% Similarity=0.018 Sum_probs=97.2
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----------CCCeEEeccCCCCCCCCCEEEeccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----------PGVEHVGGDMFENVPRGDAIFLKWM 274 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----------~rv~~~~~D~~~~~p~~D~i~~~~v 274 (370)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .++.|...|+.+.....|+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4579999999999999999985 578999998 8888766542 2467888887542122399999999
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC------CcccCHHHHHHHHHh
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG------GRERSKKEYEALAKN 348 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~~t~~e~~~ll~~ 348 (370)
|||++++....+++.+.+ +.+||. +|.. .+.. .....+...--.+ ++ ....+.++++++|++
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~g~l-iIs~--~p~~-------~~~~~l~~~g~~~-~g~~~~~r~y~~s~eel~~lL~~ 289 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAEKRL-IISF--APKT-------LYYDILKRIGELF-PGPSKATRAYLHAEADVERALKK 289 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcCCEE-EEEe--CCcc-------hHHHHHHHHHhhc-CCCCcCceeeeCCHHHHHHHHHH
Confidence 999998777778888875 455554 4422 1211 0000111000001 11 123479999999999
Q ss_pred CCCCcceEEecCCCe---eEEEEe
Q 017495 349 SGFSGLEIVCCAYNS---WVMEFH 369 (370)
Q Consensus 349 aGf~~v~~~~~~~~~---~~~e~~ 369 (370)
+||+++...-....+ .++|++
T Consensus 290 AGf~v~~~~~~~~~~y~~~l~~~~ 313 (315)
T PLN02585 290 AGWKVARREMTATQFYFSRLLEAV 313 (315)
T ss_pred CCCEEEEEEEeecceeHHhhhhhc
Confidence 999987655443322 355554
No 63
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.31 E-value=1.1e-10 Score=101.83 Aligned_cols=132 Identities=14% Similarity=0.068 Sum_probs=98.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC------------------CCCCCeEEeccCCCCCC--
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP------------------SFPGVEHVGGDMFENVP-- 264 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~------------------~~~rv~~~~~D~~~~~p-- 264 (370)
.+..+|||+|||.|..+..|++ -+..++++|+ |..++.+. +..+|+++++|+++..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~--~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAE--QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 4567999999999999999998 4778999998 77777631 12468999999998322
Q ss_pred -C-CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHH
Q 017495 265 -R-GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEY 342 (370)
Q Consensus 265 -~-~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~ 342 (370)
. .|.|+-..++||++.+....+++.+.++|+|||++++.....+..... . .-...+.+++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-----------------g-pp~~~~~~eL 172 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-----------------G-PPFSVSPAEV 172 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-----------------C-cCCCCCHHHH
Confidence 2 399999999999999988999999999999999988876654321100 0 0113578889
Q ss_pred HHHHHhCCCCcceEEe
Q 017495 343 EALAKNSGFSGLEIVC 358 (370)
Q Consensus 343 ~~ll~~aGf~~v~~~~ 358 (370)
.++|.. +|.+..+..
T Consensus 173 ~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 173 EALYGG-HYEIELLES 187 (213)
T ss_pred HHHhcC-CceEEEEee
Confidence 888864 455554443
No 64
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.29 E-value=2.6e-11 Score=108.23 Aligned_cols=141 Identities=16% Similarity=0.072 Sum_probs=96.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhC------CCCC-CCeEEeccCCC-CCCCC-CEEEeccccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANA------PSFP-GVEHVGGDMFE-NVPRG-DAIFLKWMLH 276 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a------~~~~-rv~~~~~D~~~-~~p~~-D~i~~~~vLh 276 (370)
.+++|||||||.|.++..++.+.+. .++++|. +...-.. ...+ .+.....-+.. +.... |+|++-.|||
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLY 193 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehh
Confidence 4679999999999999999987543 5889995 3322221 1112 22333222222 22233 9999999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCcc--chhhhhhhhHHhhhcCC-CcccCHHHHHHHHHhCCCCc
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQAS--SHIVFEQDLFMLAQTTG-GRERSKKEYEALAKNSGFSG 353 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~-~~~~t~~e~~~ll~~aGf~~ 353 (370)
|..++ ...|+.+++.|+|||.|++-..+.+.+...... ..+. .| .+ -...|...+..||+.+||+.
T Consensus 194 Hrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa-----~m----~nv~FiPs~~~L~~wl~r~gF~~ 262 (315)
T PF08003_consen 194 HRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYA-----KM----RNVWFIPSVAALKNWLERAGFKD 262 (315)
T ss_pred ccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCccc-----CC----CceEEeCCHHHHHHHHHHcCCce
Confidence 98877 789999999999999999988877654221100 0000 01 11 12458999999999999999
Q ss_pred ceEEec
Q 017495 354 LEIVCC 359 (370)
Q Consensus 354 v~~~~~ 359 (370)
++++..
T Consensus 263 v~~v~~ 268 (315)
T PF08003_consen 263 VRCVDV 268 (315)
T ss_pred EEEecC
Confidence 998775
No 65
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.29 E-value=2.8e-11 Score=103.07 Aligned_cols=91 Identities=21% Similarity=0.158 Sum_probs=72.4
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC-CCCC-CCEEEecccccCC
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE-NVPR-GDAIFLKWMLHGW 278 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~-~~p~-~D~i~~~~vLh~~ 278 (370)
..+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++.+|+.+ .... .|+|++.. +++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~- 120 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS- 120 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC-
Confidence 67999999999999999998889999999998 776665442 2469999999977 2222 39998866 553
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 279 TDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 279 ~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
...+++.+++.|+|||++++..
T Consensus 121 ----~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 121 ----LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ----HHHHHHHHHHhcCCCCEEEEEc
Confidence 2367888999999999999853
No 66
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.28 E-value=1.3e-10 Score=108.55 Aligned_cols=107 Identities=20% Similarity=0.255 Sum_probs=83.4
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCCC-CEEE
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPRG-DAIF 270 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~~-D~i~ 270 (370)
++..++ .....+|||+|||+|.++..+++++|..+++++|. +.+++.+++. -..+++..|.....++. |+|+
T Consensus 188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIv 266 (342)
T PRK09489 188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMII 266 (342)
T ss_pred HHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEE
Confidence 334444 23346899999999999999999999999999998 7888777642 23567788887654444 9999
Q ss_pred ecccccCC---ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 271 LKWMLHGW---TDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 271 ~~~vLh~~---~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
++..+|+. ..+....+++.+.+.|+|||.|+|+-.
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 99888863 234567999999999999999998654
No 67
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.24 E-value=1e-11 Score=105.93 Aligned_cols=137 Identities=23% Similarity=0.277 Sum_probs=95.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-----CCC-CeEEeccCCCCCCC--C-CEEEeccccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-----FPG-VEHVGGDMFENVPR--G-DAIFLKWMLH 276 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~r-v~~~~~D~~~~~p~--~-D~i~~~~vLh 276 (370)
+..+.||.|+|.|..+..++... --++..+|. +..++.+++ ..+ .++.+.-+.+-.|+ . |+|++.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 46799999999999999876633 235667776 777777663 223 34444444443343 3 9999999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceE
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEI 356 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~ 356 (370)
|++|++..++|++|+++|+|+|.|+|=|.+...+. ..+|- ..+.-.|+.+.|+++|++||++++..
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~-----~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDE-----EDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEET-----TTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCC-----ccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 99999999999999999999999999999876531 01221 12455689999999999999999975
Q ss_pred Ee
Q 017495 357 VC 358 (370)
Q Consensus 357 ~~ 358 (370)
..
T Consensus 200 ~~ 201 (218)
T PF05891_consen 200 EK 201 (218)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 68
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.24 E-value=2.7e-10 Score=99.79 Aligned_cols=133 Identities=14% Similarity=0.071 Sum_probs=98.4
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------------------CCCCeEEeccCCCCCCC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------------------FPGVEHVGGDMFENVPR 265 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------------------~~rv~~~~~D~~~~~p~ 265 (370)
..+..+|||+|||.|..+..|++ .+..++++|+ +..++.+.. ..+|++..+|+++..+.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~--~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAE--QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHh--CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 34567999999999999999998 5789999998 777775311 14688999999983222
Q ss_pred ---C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHH
Q 017495 266 ---G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKE 341 (370)
Q Consensus 266 ---~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e 341 (370)
. |+|+-..++|+++.+....+++.+.++|+|||.++++....++.... . .-...+.++
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~-----------------g-Pp~~~~~~e 174 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA-----------------G-PPFSVSDEE 174 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC-----------------C-CCCCCCHHH
Confidence 2 99999999999999999999999999999999766655544322100 0 011357899
Q ss_pred HHHHHHhCCCCcceEEe
Q 017495 342 YEALAKNSGFSGLEIVC 358 (370)
Q Consensus 342 ~~~ll~~aGf~~v~~~~ 358 (370)
+.+++.. +|.+..+..
T Consensus 175 l~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 175 VEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHhcC-CceEEEeee
Confidence 9998863 366665544
No 69
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.23 E-value=7.9e-11 Score=100.51 Aligned_cols=93 Identities=20% Similarity=0.224 Sum_probs=76.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC-CEEEeccccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG-DAIFLKWMLH 276 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~-D~i~~~~vLh 276 (370)
++..+|||||||+|..+..++...|+.+++++|. +.+++.+++. ++++++.+|+.+ +.... |+|++..+ .
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-~ 122 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-A 122 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-c
Confidence 3478999999999999999999999999999998 8888766542 459999999887 33223 99998753 1
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
....+++.+++.|+|||++++.+
T Consensus 123 -----~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 123 -----SLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred -----CHHHHHHHHHHhcCCCeEEEEEe
Confidence 24578999999999999999875
No 70
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.23 E-value=3.9e-11 Score=101.83 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=82.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-----CCCCeEEeccCCC-CCCCC-CE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-----FPGVEHVGGDMFE-NVPRG-DA 268 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~D~~~-~~p~~-D~ 268 (370)
.++..++ .-++.++||+|||.|..+..|+++ +..++.+|. +..++.+.+ .-.|+....|+.+ .+++. |+
T Consensus 21 ~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 21 EVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCE
Confidence 4555555 446789999999999999999994 678999997 656654432 2348889999987 55555 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
|++..++++++.+...++++++.+.++|||++++...+..
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~ 137 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMET 137 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEeccc
Confidence 9999999999999889999999999999999999776543
No 71
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.23 E-value=4.1e-11 Score=105.97 Aligned_cols=142 Identities=11% Similarity=0.029 Sum_probs=98.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCC--CC-CEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVP--RG-DAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p--~~-D~i~~~~vL 275 (370)
...+|||+|||+|.++..+++.. .+++++|. +.+++.++.. .++++...|+.+ +.+ .. |+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 46799999999999999888754 45889998 7776665432 257888888765 222 33 999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHh-hhcC-----CCcccCHHHHHHHHHhC
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFML-AQTT-----GGRERSKKEYEALAKNS 349 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-~~~~-----~~~~~t~~e~~~ll~~a 349 (370)
|+..+. ..+|+++++.|+|||.+++.....+.. . .........+. .... .....+.++|.++++++
T Consensus 123 ~~~~~~--~~~l~~~~~~L~~gG~l~i~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLKPGGILFFSTINRTPK---S---YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCCH--HHHHHHHHHhcCCCcEEEEEecCCCch---H---HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 998765 589999999999999999876532110 0 00000000000 0000 11234788999999999
Q ss_pred CCCcceEEe
Q 017495 350 GFSGLEIVC 358 (370)
Q Consensus 350 Gf~~v~~~~ 358 (370)
||+++++..
T Consensus 195 G~~i~~~~~ 203 (224)
T TIGR01983 195 GLRVKDVKG 203 (224)
T ss_pred CCeeeeeee
Confidence 999988764
No 72
>PTZ00146 fibrillarin; Provisional
Probab=99.21 E-value=7.7e-10 Score=99.57 Aligned_cols=139 Identities=14% Similarity=0.037 Sum_probs=94.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hh----HHHhCCCCCCCeEEeccCCCCC-----CCC-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PH----VLANAPSFPGVEHVGGDMFENV-----PRG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~----~~~~a~~~~rv~~~~~D~~~~~-----p~~-D~i~~~ 272 (370)
+.+..+|||+|||+|.++..+++... .-+++.+|+ +. +++.+....+|.++..|+..+. .+. |+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 56778999999999999999999863 458999997 53 5566655578999999986532 123 999887
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
... + ++...++.++++.|||||+|+|.-....-+. .+....+-.+|. ++|+++||+
T Consensus 210 va~---p-dq~~il~~na~r~LKpGG~~vI~ika~~id~-------------------g~~pe~~f~~ev-~~L~~~GF~ 265 (293)
T PTZ00146 210 VAQ---P-DQARIVALNAQYFLKNGGHFIISIKANCIDS-------------------TAKPEVVFASEV-QKLKKEGLK 265 (293)
T ss_pred CCC---c-chHHHHHHHHHHhccCCCEEEEEEecccccc-------------------CCCHHHHHHHHH-HHHHHcCCc
Confidence 641 2 3455677889999999999999422111100 000001101344 889999999
Q ss_pred cceEEecC---CCeeEEE
Q 017495 353 GLEIVCCA---YNSWVME 367 (370)
Q Consensus 353 ~v~~~~~~---~~~~~~e 367 (370)
.++.+.+. ..++++.
T Consensus 266 ~~e~v~L~Py~~~h~~v~ 283 (293)
T PTZ00146 266 PKEQLTLEPFERDHAVVI 283 (293)
T ss_pred eEEEEecCCccCCcEEEE
Confidence 88887764 4444444
No 73
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.21 E-value=2.1e-10 Score=91.35 Aligned_cols=100 Identities=21% Similarity=0.265 Sum_probs=77.7
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCCC---CCCC-
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFEN---VPRG- 266 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~~---~p~~- 266 (370)
++..+. ..+..+|||+|||+|.++..+++.+|..+++++|. +.+++.++. ..+++++.+|+... .+..
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP 89 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence 344444 55567999999999999999999999999999998 777776543 24688888887641 2233
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
|+|++....+ ...++++.+++.|+|||+|++.
T Consensus 90 D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 90 DRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 9999876543 3358999999999999999985
No 74
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.20 E-value=2.8e-10 Score=102.41 Aligned_cols=124 Identities=23% Similarity=0.280 Sum_probs=93.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCCC--CEEEeccc---
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPRG--DAIFLKWM--- 274 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~~--D~i~~~~v--- 274 (370)
...+|||+|||+|.++..+++.+|..+++++|. +.+++.++.. ++++++.+|+.+..+.. |+|+++--
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 446999999999999999999999999999998 8888776542 46899999998755433 99988422
Q ss_pred ---ccCCChhH------------------HHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC
Q 017495 275 ---LHGWTDEH------------------CLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG 333 (370)
Q Consensus 275 ---Lh~~~d~~------------------~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 333 (370)
++.+..+. ...+++++.+.|+|||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---------------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---------------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------------------
Confidence 22222111 23789999999999999987321
Q ss_pred CcccCHHHHHHHHHhCCCCcceEEecC
Q 017495 334 GRERSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 334 ~~~~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
....+++.++|+++||+.++++..-
T Consensus 219 --~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 219 --YDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred --ccHHHHHHHHHHhCCCCceEEEeCC
Confidence 0124678999999999998877653
No 75
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.19 E-value=7.2e-11 Score=98.66 Aligned_cols=132 Identities=17% Similarity=0.154 Sum_probs=87.7
Q ss_pred EEeeh-hhHHHhCCCC---------CCCeEEeccCCC-CCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEE
Q 017495 235 ISFDL-PHVLANAPSF---------PGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVI 301 (370)
Q Consensus 235 ~~~D~-p~~~~~a~~~---------~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~ll 301 (370)
+++|. +.+++.++++ .+++++.+|+.+ +.+.. |+|++.+++|++++. ..+|++++++|||||+|+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCcCeEEE
Confidence 36787 8888776421 368999999988 66653 999999999999855 689999999999999999
Q ss_pred EEeecCCCCCCCCccchhhhh-hhhHHhhhcCC-----------CcccCHHHHHHHHHhCCCCcceEEecCCCee-EEEE
Q 017495 302 IVESILPLVPENQASSHIVFE-QDLFMLAQTTG-----------GRERSKKEYEALAKNSGFSGLEIVCCAYNSW-VMEF 368 (370)
Q Consensus 302 i~e~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~-----------~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~-~~e~ 368 (370)
|.|...++............. .-+........ ....+.+++.++|+++||+.++......+.. +...
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 158 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVA 158 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEe
Confidence 999976543111000000000 00000000000 1235899999999999999998888764433 4433
No 76
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.17 E-value=5.6e-10 Score=93.57 Aligned_cols=143 Identities=18% Similarity=0.191 Sum_probs=99.6
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC---CCCCC--CEEEecccccCCC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE---NVPRG--DAIFLKWMLHGWT 279 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~---~~p~~--D~i~~~~vLh~~~ 279 (370)
++..+|||+|||.|.++..|.+. .++++.++++ ++-+..+.+ ..+.++++|+.+ .+|.. |.|+++.+|.++.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 46799999999999999888885 6899999987 655554443 368999999987 46654 9999999999977
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeecCCC----------CCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhC
Q 017495 280 DEHCLKLLKNCWEALPENGKVIIVESILPL----------VPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNS 349 (370)
Q Consensus 280 d~~~~~iL~~~~~~L~pgG~lli~e~~~~~----------~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~a 349 (370)
.+ ..+|+++.++ |.+.++.-+.... +..+-.......| ..+++-...|..++++++++.
T Consensus 90 ~P--~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~W------YdTPNih~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 90 RP--DEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEW------YDTPNIHLCTIKDFEDLCREL 158 (193)
T ss_pred HH--HHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcc------cCCCCcccccHHHHHHHHHHC
Confidence 55 5778887666 5566654332110 0000000000111 113455566999999999999
Q ss_pred CCCcceEEecCC
Q 017495 350 GFSGLEIVCCAY 361 (370)
Q Consensus 350 Gf~~v~~~~~~~ 361 (370)
|+++++.....+
T Consensus 159 ~i~I~~~~~~~~ 170 (193)
T PF07021_consen 159 GIRIEERVFLDG 170 (193)
T ss_pred CCEEEEEEEEcC
Confidence 999999887753
No 77
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.17 E-value=4.2e-10 Score=97.29 Aligned_cols=146 Identities=15% Similarity=0.163 Sum_probs=92.9
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC---CCCC-C-CEEEecccccCCC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE---NVPR-G-DAIFLKWMLHGWT 279 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~---~~p~-~-D~i~~~~vLh~~~ 279 (370)
++..+|||||||+|.++..+++. ....++++|. +.+++.++. .+++++.+|+.+ +.+. . |+|++.++|||++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 35679999999999999888765 4567899998 777776654 358889999865 2333 3 9999999999987
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCc-----cchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcc
Q 017495 280 DEHCLKLLKNCWEALPENGKVIIVESILPLVPENQA-----SSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGL 354 (370)
Q Consensus 280 d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v 354 (370)
+. ..+|+++.+.+++ +++.-+.......... .......+..... ...+....+.+++.++++++||+++
T Consensus 90 d~--~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ll~~~Gf~v~ 163 (194)
T TIGR02081 90 NP--EEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWY-NTPNIHFCTIADFEDLCGELNLRIL 163 (194)
T ss_pred CH--HHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCcccc-CCCCcccCcHHHHHHHHHHCCCEEE
Confidence 65 5778888877553 3332111100000000 0000000000000 0012345689999999999999998
Q ss_pred eEEec
Q 017495 355 EIVCC 359 (370)
Q Consensus 355 ~~~~~ 359 (370)
.....
T Consensus 164 ~~~~~ 168 (194)
T TIGR02081 164 DRAAF 168 (194)
T ss_pred EEEEe
Confidence 87665
No 78
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.16 E-value=8.8e-11 Score=102.02 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=76.4
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccC-CC-C--CCCC--CEEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDM-FE-N--VPRG--DAIFLKW 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~-~~-~--~p~~--D~i~~~~ 273 (370)
+..+|||||||+|..+..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+ .. + ++.+ |+|++.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 567999999999999999999999999999998 888876653 25789999998 43 3 4433 9998865
Q ss_pred cccCCC------hhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 274 MLHGWT------DEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 274 vLh~~~------d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
...... ......+|++++++|+|||.|++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 442211 1113578999999999999999864
No 79
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.15 E-value=8.3e-10 Score=96.29 Aligned_cols=107 Identities=16% Similarity=0.158 Sum_probs=79.0
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeehhhHHHhCCCCCCCeEEeccCCCC---------CCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDLPHVLANAPSFPGVEHVGGDMFEN---------VPR 265 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~---------~p~ 265 (370)
.++...+.-+++..+|||||||+|.++..+++.. +..+++++|+..+. ...+++++.+|+.+. .+.
T Consensus 40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 3444444424667899999999999999999986 45689999984432 235699999999873 333
Q ss_pred -C-CEEEecccccCCChhH---------HHHHHHHHHHhCCCCcEEEEEeec
Q 017495 266 -G-DAIFLKWMLHGWTDEH---------CLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 266 -~-D~i~~~~vLh~~~d~~---------~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
. |+|++....|....+. ...+|+.+.++|+|||+|++..+.
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 3 9999977666543221 246899999999999999996543
No 80
>PRK14968 putative methyltransferase; Provisional
Probab=99.14 E-value=1.7e-09 Score=92.84 Aligned_cols=134 Identities=20% Similarity=0.237 Sum_probs=94.9
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CC-CeEEeccCCCCCCC-C-CEEEeccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PG-VEHVGGDMFENVPR-G-DAIFLKWM 274 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~r-v~~~~~D~~~~~p~-~-D~i~~~~v 274 (370)
.+..+|||+|||+|.++..+++. +.+++++|. +.+++.+++. ++ +.++.+|+.+..++ . |+|++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45679999999999999999987 678999998 8887766432 22 88999998885554 3 99987654
Q ss_pred ccCCC-------------------hhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCc
Q 017495 275 LHGWT-------------------DEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGR 335 (370)
Q Consensus 275 Lh~~~-------------------d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 335 (370)
++... ......+++++.++|+|||.+++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~---------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL---------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------------------
Confidence 33211 1224578999999999999998754211
Q ss_pred ccCHHHHHHHHHhCCCCcceEEecC---CCeeEEEEeC
Q 017495 336 ERSKKEYEALAKNSGFSGLEIVCCA---YNSWVMEFHK 370 (370)
Q Consensus 336 ~~t~~e~~~ll~~aGf~~v~~~~~~---~~~~~~e~~k 370 (370)
...+++.++++++||++..+.... ....+++.+|
T Consensus 152 -~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T PRK14968 152 -TGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188 (188)
T ss_pred -CCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence 123568899999999988765442 2333555443
No 81
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.13 E-value=1.7e-10 Score=97.39 Aligned_cols=99 Identities=26% Similarity=0.332 Sum_probs=79.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC-C-CEEEecccccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR-G-DAIFLKWMLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~-~-D~i~~~~vLh~ 277 (370)
...+|||+|||+|..+..+++.+|+.+++.+|. +.+++.++++ ..++++..|.++..+. . |+|+++-=+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 567999999999999999999999999999998 8888877542 2388999999986663 3 99999877765
Q ss_pred CCh---hHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 278 WTD---EHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 278 ~~d---~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
-.+ +-..++++.+.+.|+|||.|+++-.
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 443 2357999999999999999987544
No 82
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.13 E-value=1.3e-09 Score=99.50 Aligned_cols=135 Identities=21% Similarity=0.242 Sum_probs=96.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC-C-CEEEecc--
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR-G-DAIFLKW-- 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~-~-D~i~~~~-- 273 (370)
..+..+|||+|||+|..+..++..+|..+++++|. +.+++.++++ .++.++.+|++++.+. . |+|+++-
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 44667999999999999999999999999999998 7777766542 4799999999875543 3 9998741
Q ss_pred ----cccCCCh------------------hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhc
Q 017495 274 ----MLHGWTD------------------EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQT 331 (370)
Q Consensus 274 ----vLh~~~d------------------~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 331 (370)
.++...+ +....+++++.+.|+|||++++. . ..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e-~--g~---------------------- 240 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE-I--GY---------------------- 240 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE-E--Cc----------------------
Confidence 1111111 12357899999999999999882 1 00
Q ss_pred CCCcccCHHHHHHHHHhCCCCcceEEec-CCCeeEEEEe
Q 017495 332 TGGRERSKKEYEALAKNSGFSGLEIVCC-AYNSWVMEFH 369 (370)
Q Consensus 332 ~~~~~~t~~e~~~ll~~aGf~~v~~~~~-~~~~~~~e~~ 369 (370)
...+++.+++++.||+.++++.. .+...++.+.
T Consensus 241 -----~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 -----DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred -----hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 11356889999999997777553 2333344443
No 83
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.11 E-value=2e-09 Score=91.07 Aligned_cols=159 Identities=18% Similarity=0.179 Sum_probs=100.9
Q ss_pred hhccCCchHHHHHHHHHH----hchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhC
Q 017495 171 EYLGTDPRFNGVFNEAMS----NHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANA 246 (370)
Q Consensus 171 ~~~~~~~~~~~~~~~~m~----~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a 246 (370)
+.+.++|+....|+.+.. .|....+..+++.+...++...|.|+|||.+.++..+. ...++.-+|+-..
T Consensus 32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~---~~~~V~SfDLva~---- 104 (219)
T PF05148_consen 32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP---NKHKVHSFDLVAP---- 104 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH-----S---EEEEESS-S----
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc---cCceEEEeeccCC----
Confidence 344556666666666544 44445677777777644456799999999999886653 2357888897221
Q ss_pred CCCCCCeEEeccCCC-CCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhh
Q 017495 247 PSFPGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQ 323 (370)
Q Consensus 247 ~~~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~ 323 (370)
+-.+...|+.. |.+.. |+++++-.|.. .+...+|+++.|.|||||.|.|.|-...
T Consensus 105 ----n~~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~SR--------------- 162 (219)
T PF05148_consen 105 ----NPRVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKSR--------------- 162 (219)
T ss_dssp ----STTEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGGG---------------
T ss_pred ----CCCEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEeccc---------------
Confidence 23577899977 77765 99999888865 3568999999999999999999996431
Q ss_pred hhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 324 DLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 324 d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
.-..+++.+.++..||+............++++.|
T Consensus 163 ------------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 163 ------------FENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp -------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred ------------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 01467888999999999988665556666777665
No 84
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.10 E-value=5.4e-09 Score=92.58 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=111.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCC--CeEEEeeh-hhHHHhCCC------CCCC-eEEeccCCCC------CCCCCEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPC--IKGISFDL-PHVLANAPS------FPGV-EHVGGDMFEN------VPRGDAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-p~~~~~a~~------~~rv-~~~~~D~~~~------~p~~D~i 269 (370)
..+.+||||.||+|.+....+..+|. .++...|. |.-++..++ ...+ +|..+|.++. .|..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999998 67888897 666665543 2444 9999999982 2333999
Q ss_pred EecccccCCChhHH-HHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCC-----cccCHHHHH
Q 017495 270 FLKWMLHGWTDEHC-LKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGG-----RERSKKEYE 343 (370)
Q Consensus 270 ~~~~vLh~~~d~~~-~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----~~~t~~e~~ 343 (370)
+.+-+...++|.+. ...|+.+++++.|||+|+....-..+. .. .+.. .+..+.+| +.||..|+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ-------le--~IAr-~LtsHr~g~~WvMRrRsq~EmD 283 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ-------LE--MIAR-VLTSHRDGKAWVMRRRSQAEMD 283 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc-------hH--HHHH-HHhcccCCCceEEEecCHHHHH
Confidence 99999999999774 457999999999999999855332221 00 1111 11111222 247999999
Q ss_pred HHHHhCCCCcceEEecC-CCeeEEEEeC
Q 017495 344 ALAKNSGFSGLEIVCCA-YNSWVMEFHK 370 (370)
Q Consensus 344 ~ll~~aGf~~v~~~~~~-~~~~~~e~~k 370 (370)
+|++.|||..++..-.. +.++|..++|
T Consensus 284 ~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHcCCchhhheeccCCceEEEeecC
Confidence 99999999877644333 5566666554
No 85
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.10 E-value=2e-09 Score=89.65 Aligned_cols=101 Identities=25% Similarity=0.267 Sum_probs=81.8
Q ss_pred HHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCC---CCCCCE
Q 017495 199 LDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFEN---VPRGDA 268 (370)
Q Consensus 199 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~---~p~~D~ 268 (370)
+..+. ..+..+++|||||+|..+...+...|..+++.+|. ++.++..+++ +++.++.+|..+. .|..|.
T Consensus 27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 34455 77889999999999999999998899999999997 7777665542 7899999998873 333499
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|++.-.- ....+|+.+...|+|||+|++.-..
T Consensus 106 iFIGGg~------~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 106 IFIGGGG------NIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred EEECCCC------CHHHHHHHHHHHcCcCCeEEEEeec
Confidence 9987662 3458999999999999999985443
No 86
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.07 E-value=3.9e-09 Score=96.70 Aligned_cols=94 Identities=21% Similarity=0.274 Sum_probs=75.3
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC-C-CEEEec------
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR-G-DAIFLK------ 272 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~-~-D~i~~~------ 272 (370)
.+|||+|||+|.++..++..+|+.+++++|. +.+++.++++ .+++++.+|++++.+. . |+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6999999999999999999999999999998 8888776642 3599999999886654 3 999884
Q ss_pred -------ccccCCCh----------hHHHHHHHHHHHhCCCCcEEEE
Q 017495 273 -------WMLHGWTD----------EHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 273 -------~vLh~~~d----------~~~~~iL~~~~~~L~pgG~lli 302 (370)
.++++-|. +....+++.+.+.|+|||++++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 23333221 1356899999999999998876
No 87
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=7.1e-09 Score=92.94 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=85.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCCC-CE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPRG-DA 268 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~~-D~ 268 (370)
-+++.++ .....+|||+|||.|.++..+++.+|..+++.+|. ...++.++++ .+..+...|..++.... |.
T Consensus 149 lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~ 227 (300)
T COG2813 149 LLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDL 227 (300)
T ss_pred HHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccccE
Confidence 4566666 44455999999999999999999999999999998 7778887764 22357788888755544 99
Q ss_pred EEecccccCCC---hhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 269 IFLKWMLHGWT---DEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 269 i~~~~vLh~~~---d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|+++==+|.-- ..-..++++.+.+.|++||.|.|+-.
T Consensus 228 IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 228 IISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred EEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 99988888632 22234899999999999999999665
No 88
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.06 E-value=3.5e-10 Score=97.65 Aligned_cols=98 Identities=18% Similarity=0.319 Sum_probs=75.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC-C---CCCC--CEEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE-N---VPRG--DAIFLKW 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~-~---~p~~--D~i~~~~ 273 (370)
...+|||||||+|.++..+++++|+..++++|. +.+++.+++ ..+++++.+|+.+ . .+.+ |.|++.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999998 777776643 2579999999975 1 3432 8887764
Q ss_pred cccCCChhH-------HHHHHHHHHHhCCCCcEEEEEee
Q 017495 274 MLHGWTDEH-------CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 274 vLh~~~d~~-------~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
-.+ |+... ...+++.++++|||||.|++...
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 332 22111 14789999999999999988653
No 89
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.05 E-value=3.9e-09 Score=96.47 Aligned_cols=96 Identities=23% Similarity=0.310 Sum_probs=75.2
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC-C-CEEEecc---
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR-G-DAIFLKW--- 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~-~-D~i~~~~--- 273 (370)
+..+|||+|||+|.++..+++.+|+.+++++|. +.+++.++++ ++++++.+|+++..+. . |+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457999999999999999999999999999998 8888877642 4689999999875554 3 9999840
Q ss_pred ----------cccCCCh----------hHHHHHHHHHHHhCCCCcEEEE
Q 017495 274 ----------MLHGWTD----------EHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 274 ----------vLh~~~d----------~~~~~iL~~~~~~L~pgG~lli 302 (370)
.+++.+. +....+++.+.+.|+|||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122111 1236789999999999999886
No 90
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.05 E-value=1.3e-09 Score=94.92 Aligned_cols=99 Identities=16% Similarity=0.126 Sum_probs=75.8
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC--
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR-- 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~-- 265 (370)
.+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|. +.+++.++++ ++++++.+|+.+..+.
T Consensus 63 ~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 63 MMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 3444444 55678999999999999999988764 568999998 8877766542 3589999999874332
Q ss_pred C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 266 G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
. |+|++...+++++ +.+.+.|+|||+|++..
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 2 9999998887655 35678999999998843
No 91
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.04 E-value=1.1e-09 Score=99.64 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=72.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCC---eEEEeeh-hhHHHhCCCC-CCCeEEeccCCC-CCCCC--CEEEecccccCC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCI---KGISFDL-PHVLANAPSF-PGVEHVGGDMFE-NVPRG--DAIFLKWMLHGW 278 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~ 278 (370)
...+|||||||+|.++..+++.+|.. .++++|+ +.+++.+++. .++.+..+|..+ +++.+ |+|++...-
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~--- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP--- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC---
Confidence 45789999999999999999887753 6899998 8888877653 678999999887 66654 999875431
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 279 TDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 279 ~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
..+++++++|+|||+|+++.+
T Consensus 162 ------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 162 ------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred ------CCHHHHHhhccCCCEEEEEeC
Confidence 236789999999999999764
No 92
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.03 E-value=7.7e-09 Score=89.43 Aligned_cols=158 Identities=19% Similarity=0.185 Sum_probs=113.0
Q ss_pred hhhccCCchHHHHHHHHHHhchH----HHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHh
Q 017495 170 FEYLGTDPRFNGVFNEAMSNHSA----LVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLAN 245 (370)
Q Consensus 170 ~~~~~~~~~~~~~~~~~m~~~~~----~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~ 245 (370)
++.+..+|+....|+.+..+... ..+..+++.+..-+....|.|+|||-+.++. .-..++.-+|+-.+
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~-----~~~~kV~SfDL~a~--- 210 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS-----SERHKVHSFDLVAV--- 210 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh-----ccccceeeeeeecC---
Confidence 44455677777777777665333 3466677766644567899999999998775 12346777887322
Q ss_pred CCCCCCCeEEeccCCC-CCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhh
Q 017495 246 APSFPGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFE 322 (370)
Q Consensus 246 a~~~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 322 (370)
+-+++..|+.. |.+.. |+++++-.|.. .+...+++.++++|+|||.++|.|....
T Consensus 211 -----~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~SR-------------- 268 (325)
T KOG3045|consen 211 -----NERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKSR-------------- 268 (325)
T ss_pred -----CCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhhh--------------
Confidence 45678889988 66654 99988877764 3567999999999999999999886321
Q ss_pred hhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 323 QDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 323 ~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
..+...+.+.|...||.+....-....+.++++.|
T Consensus 269 -------------f~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 269 -------------FSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred -------------cccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 11344588899999999887766666777777765
No 93
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.03 E-value=3.1e-09 Score=95.55 Aligned_cols=118 Identities=20% Similarity=0.207 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---C----CCeEEeccCCCCCCCCCEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---P----GVEHVGGDMFENVPRGDAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~----rv~~~~~D~~~~~p~~D~i~~~~vLh~ 277 (370)
.+..+|||||||+|.++..+++..+ .+++++|. |.+++.++++ . ++.+..+|. ..|+|+++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~--- 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL--- 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc---
Confidence 3578999999999999988776543 46999998 8888877653 1 223322221 2399887532
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~ 357 (370)
.+....+++.+.+.|+|||++++...... ..+++.+.+++.||++++..
T Consensus 189 --~~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 189 --ANPLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred --HHHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHHHHHCCCEEEEEE
Confidence 23456789999999999999998654321 24578889999999998877
Q ss_pred ecCCCe
Q 017495 358 CCAYNS 363 (370)
Q Consensus 358 ~~~~~~ 363 (370)
....-.
T Consensus 238 ~~~~W~ 243 (250)
T PRK00517 238 ERGEWV 243 (250)
T ss_pred EeCCEE
Confidence 764433
No 94
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.02 E-value=6.2e-09 Score=90.23 Aligned_cols=97 Identities=18% Similarity=0.256 Sum_probs=74.5
Q ss_pred HhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---CCC-C
Q 017495 200 DVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---VPR-G 266 (370)
Q Consensus 200 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~p~-~ 266 (370)
..+. ..+..+|||+|||+|.++..+++.. +..+++++|. +.+++.++++ +++.++.+|+.+. .+. .
T Consensus 34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 3344 6677899999999999999988764 6679999998 8888765431 4688999998752 222 3
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEE
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli 302 (370)
|+|++... ..+...+|+.+.+.|+|||++++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99988532 23456899999999999999986
No 95
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.99 E-value=3.2e-09 Score=92.97 Aligned_cols=100 Identities=17% Similarity=0.209 Sum_probs=76.7
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC-CC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP-RG 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p-~~ 266 (370)
..++..+. ..+..+|||||||+|..+..+++.. ++.+++++|. +.+++.+++. .+++++.+|.....+ .+
T Consensus 66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 34455555 6778899999999999999888875 4568999998 8888877642 579999999887333 23
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
|+|++...+++.+ +.+.+.|+|||+|++..
T Consensus 145 ~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 145 PYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 9999987766543 35667899999999853
No 96
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.98 E-value=4.4e-09 Score=91.03 Aligned_cols=101 Identities=20% Similarity=0.281 Sum_probs=76.9
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCC---CCC-C
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFEN---VPR-G 266 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~---~p~-~ 266 (370)
++..+. ..+..+|||+|||+|.++..+++..|+.+++++|. |.+++.++++ .+++++.+|+.+. ... .
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 444444 56778999999999999999998888899999998 8888776542 4689999988652 222 3
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|.+++.. ......+|+++.+.|+|||++++...
T Consensus 111 d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 6655421 12346889999999999999999764
No 97
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.98 E-value=1.4e-08 Score=95.79 Aligned_cols=125 Identities=22% Similarity=0.265 Sum_probs=91.2
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCC-C-C-CEEEecccc-
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVP-R-G-DAIFLKWML- 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p-~-~-D~i~~~~vL- 275 (370)
+..+|||+|||+|.++..++..+|+.+++++|. +.+++.++++ .+++++.+|+++ ..+ . . |+|+++---
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 456999999999999999999999999999998 8888877653 368999999976 333 2 3 999984310
Q ss_pred --------------------cCCCh--hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC
Q 017495 276 --------------------HGWTD--EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG 333 (370)
Q Consensus 276 --------------------h~~~d--~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 333 (370)
-...+ +-...+++.+.+.|+|||.+++ |.-.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~-------------------------- 383 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF-------------------------- 383 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc--------------------------
Confidence 00000 0124778888899999998765 3211
Q ss_pred CcccCHHHHHHHHHhCCCCcceEEecCC
Q 017495 334 GRERSKKEYEALAKNSGFSGLEIVCCAY 361 (370)
Q Consensus 334 ~~~~t~~e~~~ll~~aGf~~v~~~~~~~ 361 (370)
...+.+.+++++.||+.+++...-.
T Consensus 384 ---~Q~e~V~~ll~~~Gf~~v~v~kDl~ 408 (423)
T PRK14966 384 ---DQGAAVRGVLAENGFSGVETLPDLA 408 (423)
T ss_pred ---cHHHHHHHHHHHCCCcEEEEEEcCC
Confidence 0145788899999999888777543
No 98
>PHA03411 putative methyltransferase; Provisional
Probab=98.98 E-value=7.1e-09 Score=92.40 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=91.4
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCCCC-CCC-CEEEecccccCCChhH
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFENV-PRG-DAIFLKWMLHGWTDEH 282 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~~~-p~~-D~i~~~~vLh~~~d~~ 282 (370)
...+|||+|||+|.++..++++.+..+++++|+ +.+++.+++. .+++++.+|+.+.. ... |+|+++--+++.+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 346999999999999999988887889999998 8888877753 57999999998733 333 9999977777654432
Q ss_pred H------------------HHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 283 C------------------LKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 283 ~------------------~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
. .+.++.....|+|+|.+.++=. .. + . . ....+.+++++
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ys---s~---~-------~---------y-~~sl~~~~y~~ 200 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYS---GR---P-------Y---------Y-DGTMKSNKYLK 200 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEe---cc---c-------c---------c-cccCCHHHHHH
Confidence 1 3566777888888887776511 10 0 0 0 11236889999
Q ss_pred HHHhCCCCc
Q 017495 345 LAKNSGFSG 353 (370)
Q Consensus 345 ll~~aGf~~ 353 (370)
+|+++||..
T Consensus 201 ~l~~~g~~~ 209 (279)
T PHA03411 201 WSKQTGLVT 209 (279)
T ss_pred HHHhcCcEe
Confidence 999999964
No 99
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.97 E-value=4.9e-09 Score=92.09 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=75.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC--C-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP--R- 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p--~- 265 (370)
.++..+. ..+..+|||||||+|.++..+++..+ +.+++++|. +.+++.++++ ++++++.+|..+..+ .
T Consensus 68 ~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 146 (215)
T TIGR00080 68 MMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAP 146 (215)
T ss_pred HHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCC
Confidence 4444454 66788999999999999999998865 567999997 8888776542 579999999987332 2
Q ss_pred CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 266 GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 266 ~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
.|+|++.....+. .+.+.+.|+|||+|++.
T Consensus 147 fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 147 YDRIYVTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred CCEEEEcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 3999987665543 34577899999999985
No 100
>PRK04457 spermidine synthase; Provisional
Probab=98.96 E-value=1.9e-09 Score=97.27 Aligned_cols=99 Identities=20% Similarity=0.304 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC---CCCCC-CEEEecc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE---NVPRG-DAIFLKW 273 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~---~~p~~-D~i~~~~ 273 (370)
+++.+|||||||+|.++..+++.+|+.+++++|+ |.+++.++++ ++++++.+|..+ ..++. |+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3568999999999999999999999999999999 9999877642 579999999865 23334 9998753
Q ss_pred cccC--CChh-HHHHHHHHHHHhCCCCcEEEEEee
Q 017495 274 MLHG--WTDE-HCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 274 vLh~--~~d~-~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
++. .+.. ....+++++++.|+|||++++.-.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 221 1211 125899999999999999998543
No 101
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.94 E-value=1.3e-08 Score=89.49 Aligned_cols=125 Identities=15% Similarity=0.097 Sum_probs=95.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---CCC--CCEEEe
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---VPR--GDAIFL 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~p~--~D~i~~ 271 (370)
.+...+|||+|||+|..+..++++++.++++++++ +.+.+.|++. +||++++.|+..- .+. .|+|+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 44589999999999999999999999999999998 8888877653 6899999999872 222 289998
Q ss_pred cccccCCChh----------------HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCc
Q 017495 272 KWMLHGWTDE----------------HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGR 335 (370)
Q Consensus 272 ~~vLh~~~d~----------------~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 335 (370)
+==.+.-.+. ...++++.+.+.|||||++.++-...
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---------------------------- 173 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---------------------------- 173 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH----------------------------
Confidence 5433322221 24689999999999999999865311
Q ss_pred ccCHHHHHHHHHhCCCCcceEEec
Q 017495 336 ERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 336 ~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
...+|.+++++.+|...++..+
T Consensus 174 --rl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 174 --RLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred --HHHHHHHHHHhcCCCceEEEEe
Confidence 1346788888888887776655
No 102
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.93 E-value=5.3e-09 Score=98.08 Aligned_cols=107 Identities=17% Similarity=0.280 Sum_probs=79.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC---CCCCC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE---NVPRG 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~---~~p~~ 266 (370)
.++..+. ......+||||||+|.++..+++++|+..++++|+ +.+++.+.+ ..++.++.+|+.. ..+.+
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 3444444 23456899999999999999999999999999998 767665542 2579999999854 45544
Q ss_pred --CEEEecccccCCChhH-----HHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 --DAIFLKWMLHGWTDEH-----CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~-----~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|.|++.+-.. |+... ...+|+.++++|+|||.+.+...
T Consensus 192 s~D~I~lnFPdP-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPVP-WDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCCC-ccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 8888754322 22111 14899999999999999999654
No 103
>PRK14967 putative methyltransferase; Provisional
Probab=98.93 E-value=2.5e-08 Score=88.13 Aligned_cols=102 Identities=16% Similarity=0.077 Sum_probs=73.4
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCC-C-CEEEeccccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPR-G-DAIFLKWMLH 276 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~-~-D~i~~~~vLh 276 (370)
..+..+|||+|||+|.++..+++. +..+++++|. +.+++.++++ .++.++.+|+.+..+. . |+|++.--.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 455689999999999999998875 3458999998 7777765542 2478889998774443 3 9999863211
Q ss_pred CCCh-------------------hHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 277 GWTD-------------------EHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 277 ~~~d-------------------~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.-++ .....+++.+.+.|+|||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 1110 113568899999999999999865543
No 104
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.93 E-value=7.5e-09 Score=95.51 Aligned_cols=94 Identities=20% Similarity=0.274 Sum_probs=74.7
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC-C-CEEEecc-----
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR-G-DAIFLKW----- 273 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~-~-D~i~~~~----- 273 (370)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.++++ ++++++.+|+++..+. . |+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999998 8888877643 4699999999875554 3 9999851
Q ss_pred --------cccCCCh----------hHHHHHHHHHHHhCCCCcEEEE
Q 017495 274 --------MLHGWTD----------EHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 274 --------vLh~~~d----------~~~~~iL~~~~~~L~pgG~lli 302 (370)
.+++.+. +....+++++.+.|+|||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122121 1236889999999999999887
No 105
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.91 E-value=1.1e-08 Score=93.75 Aligned_cols=93 Identities=17% Similarity=0.128 Sum_probs=69.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCC-CEEEecccccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRG-DAIFLKWMLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~-D~i~~~~vLh~ 277 (370)
+..+|||||||+|.++..+++. +..+++++|. +.+++.++++ .++.+...+.....+.. |+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 4689999999999999888764 4568999998 8888777642 34566666533322233 999986443
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+....++.++++.|+|||+|++...
T Consensus 236 ---~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 ---EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ---HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2446889999999999999998664
No 106
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.90 E-value=2.2e-08 Score=98.60 Aligned_cols=125 Identities=17% Similarity=0.219 Sum_probs=91.9
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC-C-CEEEecc----
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR-G-DAIFLKW---- 273 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~-~-D~i~~~~---- 273 (370)
..+|||+|||+|.++..++..+|+.+++++|. +.+++.++++ ++++++.+|+++..+. . |+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999998 8888877642 4789999998875443 3 9999831
Q ss_pred ----------cccCCCh----------hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC
Q 017495 274 ----------MLHGWTD----------EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG 333 (370)
Q Consensus 274 ----------vLh~~~d----------~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 333 (370)
++.+.+. +-...+++.+.+.|+|||.+++ |.. .
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig--~------------------------ 271 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIG--F------------------------ 271 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EEC--C------------------------
Confidence 1111110 1234678899999999999876 321 0
Q ss_pred CcccCHHHHHHHHHhCCCCcceEEecCCC
Q 017495 334 GRERSKKEYEALAKNSGFSGLEIVCCAYN 362 (370)
Q Consensus 334 ~~~~t~~e~~~ll~~aGf~~v~~~~~~~~ 362 (370)
...+.+.+++.+.||..++++..-.+
T Consensus 272 ---~q~~~v~~~~~~~g~~~~~~~~D~~g 297 (506)
T PRK01544 272 ---KQEEAVTQIFLDHGYNIESVYKDLQG 297 (506)
T ss_pred ---chHHHHHHHHHhcCCCceEEEecCCC
Confidence 01456788888999998887765433
No 107
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.90 E-value=1.6e-08 Score=86.91 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=74.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeehhhHHHhCCCCCCCeEEeccCCCC---------CCC-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDLPHVLANAPSFPGVEHVGGDMFEN---------VPR- 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~---------~p~- 265 (370)
++...+....+..+|||+|||+|.++..+++.+ +..+++++|+.... ...++.++.+|+.+. .+.
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 344445445678899999999999999999887 56789999983322 235688899998752 233
Q ss_pred C-CEEEeccccc---CCCh------hHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 266 G-DAIFLKWMLH---GWTD------EHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 266 ~-D~i~~~~vLh---~~~d------~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
. |+|++....| .|.- +....+|+.+++.|+|||++++..
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 3 9999854322 1111 123689999999999999999853
No 108
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.90 E-value=4.5e-08 Score=87.86 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=87.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CCCeEEeccCCCCCC----CC-CEEEeccc---
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PGVEHVGGDMFENVP----RG-DAIFLKWM--- 274 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~D~~~~~p----~~-D~i~~~~v--- 274 (370)
+..+|||+|||+|.++..+++.+|..+++++|. +.+++.++++ .+++++.+|+.+..+ .. |+|+++-=
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 346899999999999999999999999999998 8888877653 346899999886432 23 99987521
Q ss_pred ---ccCCChh------------------HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC
Q 017495 275 ---LHGWTDE------------------HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG 333 (370)
Q Consensus 275 ---Lh~~~d~------------------~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 333 (370)
++..+++ -...+++.+.+.|+|||++++.-. . +
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~-~-~------------------------ 219 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS-E-R------------------------ 219 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-c-c------------------------
Confidence 1111111 124788889999999999997421 0 1
Q ss_pred CcccCHHHHHHHHHhCCCCcceEEe
Q 017495 334 GRERSKKEYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 334 ~~~~t~~e~~~ll~~aGf~~v~~~~ 358 (370)
..+++.+++++.||+.....+
T Consensus 220 ----~~~~v~~~l~~~g~~~~~~~~ 240 (251)
T TIGR03704 220 ----QAPLAVEAFARAGLIARVASS 240 (251)
T ss_pred ----hHHHHHHHHHHCCCCceeeEc
Confidence 134677888889998665444
No 109
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.89 E-value=3.6e-08 Score=86.21 Aligned_cols=101 Identities=14% Similarity=0.090 Sum_probs=84.4
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------------------CCCCeEEeccCCC-CCC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------------------FPGVEHVGGDMFE-NVP 264 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------------------~~rv~~~~~D~~~-~~p 264 (370)
..+..+||+.|||.|.-+..|+.. +.+++++|+ +..++.+.+ ..+|++.++|+++ +.+
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 345689999999999999999984 678999998 777776411 1479999999998 322
Q ss_pred ----CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 265 ----RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 265 ----~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.. |+|+-..+|++++++...+..+.+.++|+|||.++++....
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 12 99999999999999999999999999999999999987643
No 110
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.89 E-value=1.2e-08 Score=77.61 Aligned_cols=92 Identities=25% Similarity=0.283 Sum_probs=74.7
Q ss_pred eEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC------CCCCCeEEeccCCCCC---CCC-CEEEecccccCC
Q 017495 210 VLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP------SFPGVEHVGGDMFENV---PRG-DAIFLKWMLHGW 278 (370)
Q Consensus 210 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~------~~~rv~~~~~D~~~~~---p~~-D~i~~~~vLh~~ 278 (370)
+|+|+|||.|..+..+++ .+..+++++|. +..+..++ ...++++..+|+.+.. +.. |+|++...++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67789999997 66655444 1257899999998832 233 999999999875
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 279 TDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 279 ~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
.+....+++.+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 446689999999999999999875
No 111
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.87 E-value=3e-08 Score=92.86 Aligned_cols=120 Identities=18% Similarity=0.032 Sum_probs=86.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCC-C-CEEEeccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPR-G-DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~-~-D~i~~~~v 274 (370)
+++..+|||+|||+|.++...+. .+.+++++|. +.++..++.+ ..+.+..+|+.+ +.+. . |+|++.--
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~--~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGL--MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHH--hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 66778999999999999988665 4678999998 8887765532 347899999987 5543 3 99998421
Q ss_pred ------cc-CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHH
Q 017495 275 ------LH-GWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 275 ------Lh-~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 347 (370)
.. +...+...++|+.+++.|+|||++++.-+.. .+|.++++
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--------------------------------~~~~~~~~ 305 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--------------------------------IDLESLAE 305 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--------------------------------CCHHHHHh
Confidence 11 1111234689999999999999999854311 13567789
Q ss_pred hCCCCcceEEec
Q 017495 348 NSGFSGLEIVCC 359 (370)
Q Consensus 348 ~aGf~~v~~~~~ 359 (370)
++|| ++..+..
T Consensus 306 ~~g~-i~~~~~~ 316 (329)
T TIGR01177 306 DAFR-VVKRFEV 316 (329)
T ss_pred hcCc-chheeee
Confidence 9999 7766554
No 112
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.85 E-value=1.2e-08 Score=87.42 Aligned_cols=140 Identities=16% Similarity=0.217 Sum_probs=92.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----C----------------------------
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----P---------------------------- 250 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~---------------------------- 250 (370)
|..+..+|||||..|.++..+++.|....++++|+ +..+..|+++ +
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 55788999999999999999999999999999999 7777777642 0
Q ss_pred ---------------CCeEEeccCCC-CCCCCCEEEec----ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCC
Q 017495 251 ---------------GVEHVGGDMFE-NVPRGDAIFLK----WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLV 310 (370)
Q Consensus 251 ---------------rv~~~~~D~~~-~~p~~D~i~~~----~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~ 310 (370)
++.+...|+.. ..|+.|+|+|- +|==+|.|+....+++++++.|.|||+|++ |+-.
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv-EPQp--- 211 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV-EPQP--- 211 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE-cCCc---
Confidence 11122223332 23344888773 333358899999999999999999999887 3211
Q ss_pred CCCCccchhhhhhhhHHh---hhcCCCcccCHHHHHHHHHhC--CCCcce
Q 017495 311 PENQASSHIVFEQDLFML---AQTTGGRERSKKEYEALAKNS--GFSGLE 355 (370)
Q Consensus 311 ~~~~~~~~~~~~~d~~~~---~~~~~~~~~t~~e~~~ll~~a--Gf~~v~ 355 (370)
+..+.-.-.+. .....--...++.+..++.+. ||+.+.
T Consensus 212 -------WksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 212 -------WKSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred -------hHHHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence 11111111111 001112234688999999886 666554
No 113
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.83 E-value=1.3e-07 Score=85.72 Aligned_cols=98 Identities=16% Similarity=0.128 Sum_probs=76.9
Q ss_pred CCCeEEEEcCcccHH----HHHHHhhCC----CCeEEEeeh-hhHHHhCCCC----------------------------
Q 017495 207 GLKVLVDVGGGIGVT----LGMITSRYP----CIKGISFDL-PHVLANAPSF---------------------------- 249 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~----~~~l~~~~p----~~~~~~~D~-p~~~~~a~~~---------------------------- 249 (370)
+..+|.-.||++|.- ++.+.+..+ ++++++.|+ +.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 357999999999953 333444332 467899998 8777766421
Q ss_pred ---------CCCeEEeccCCC-CCC--CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 250 ---------PGVEHVGGDMFE-NVP--RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 250 ---------~rv~~~~~D~~~-~~p--~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
.+|+|...|..+ ++| .. |+|+|.++|.|++++...+++++++++|+|||+|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 347899999988 444 33 99999999999999999999999999999999988744
No 114
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.82 E-value=4.9e-08 Score=85.39 Aligned_cols=132 Identities=18% Similarity=0.183 Sum_probs=97.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC---C---------------CCCCeEEeccCCCCCC-
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP---S---------------FPGVEHVGGDMFENVP- 264 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~---~---------------~~rv~~~~~D~~~~~p- 264 (370)
..+..+||..|||.|.-...|+++ +..++++|+ +..++.+. . ..+|++.++|+++..+
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 556789999999999999999985 679999998 77777641 1 1468999999998322
Q ss_pred C--C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCC-CCccchhhhhhhhHHhhhcCCCcccCHH
Q 017495 265 R--G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPE-NQASSHIVFEQDLFMLAQTTGGRERSKK 340 (370)
Q Consensus 265 ~--~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 340 (370)
. . |+|+=...|+.++++...+..+.++++|+|||.++++....+.... ++ -...+.+
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GP-------------------Pf~v~~~ 173 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGP-------------------PFSVTEE 173 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSS-------------------S----HH
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCc-------------------CCCCCHH
Confidence 2 2 9999999999999999999999999999999996665554332110 11 1123688
Q ss_pred HHHHHHHhCCCCcceEEe
Q 017495 341 EYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 341 e~~~ll~~aGf~~v~~~~ 358 (370)
++.+++. .+|++..+..
T Consensus 174 ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 174 EVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHT-TTEEEEEEEE
T ss_pred HHHHHhc-CCcEEEEEec
Confidence 9999999 7888776654
No 115
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.82 E-value=1.3e-08 Score=87.39 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=69.7
Q ss_pred CCCeEEEEcCcccHHH----HHHHhh---CC--CCeEEEeeh-hhHHHhCCCC---------------------------
Q 017495 207 GLKVLVDVGGGIGVTL----GMITSR---YP--CIKGISFDL-PHVLANAPSF--------------------------- 249 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~----~~l~~~---~p--~~~~~~~D~-p~~~~~a~~~--------------------------- 249 (370)
+..+|.-.||++|.-. +.+.+. .. ..++++.|+ +.+++.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5689999999999533 333341 12 467899998 8888877531
Q ss_pred -------CCCeEEeccCCC-CCCC-C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 250 -------PGVEHVGGDMFE-NVPR-G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 250 -------~rv~~~~~D~~~-~~p~-~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.+|+|...|..+ +.+. . |+|+|++||-+++++...+++++++++|+|||+|++-..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 468999999998 3333 3 999999999999999999999999999999999999543
No 116
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.81 E-value=4e-08 Score=87.05 Aligned_cols=141 Identities=26% Similarity=0.349 Sum_probs=83.7
Q ss_pred CCCeEEEEcCc--ccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCC----CCC--CeEEeccCCCC-----CCC--C---
Q 017495 207 GLKVLVDVGGG--IGVTLGMITSR-YPCIKGISFDL-PHVLANAPS----FPG--VEHVGGDMFEN-----VPR--G--- 266 (370)
Q Consensus 207 ~~~~vLDvG~G--~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~----~~r--v~~~~~D~~~~-----~p~--~--- 266 (370)
+...+|||||| |-....+++++ .|+.+++.+|. |-++..++. .++ ..++.+|+.++ .|+ +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 67899999999 34455555444 79999999998 888887764 244 88999999873 111 1
Q ss_pred ----CEEEecccccCCCh-hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHH
Q 017495 267 ----DAIFLKWMLHGWTD-EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKE 341 (370)
Q Consensus 267 ----D~i~~~~vLh~~~d-~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e 341 (370)
=.+++..+||+++| ++...+++.++..|.||++|+|...+.+..+. ............ ......||.+|
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~-----~~~~~~~~~~~~-~~~~~~Rs~~e 221 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPE-----RAEALEAVYAQA-GSPGRPRSREE 221 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHH-----HHHHHHHHHHHC-CS----B-HHH
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHH-----HHHHHHHHHHcC-CCCceecCHHH
Confidence 47888999999988 67889999999999999999999987643211 111111222111 23467899999
Q ss_pred HHHHHHhCCCCcce
Q 017495 342 YEALAKNSGFSGLE 355 (370)
Q Consensus 342 ~~~ll~~aGf~~v~ 355 (370)
+.++|. ||+.++
T Consensus 222 i~~~f~--g~elve 233 (267)
T PF04672_consen 222 IAAFFD--GLELVE 233 (267)
T ss_dssp HHHCCT--TSEE-T
T ss_pred HHHHcC--CCccCC
Confidence 999998 887664
No 117
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.80 E-value=7.6e-09 Score=81.55 Aligned_cols=96 Identities=21% Similarity=0.245 Sum_probs=74.7
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCC-C--CCCC--CEEEecccc
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFE-N--VPRG--DAIFLKWML 275 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~-~--~p~~--D~i~~~~vL 275 (370)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. .++++++.+|+.+ . .+.. |+|+++--.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 789999998 888776654 2579999999987 3 3433 999996555
Q ss_pred cCCCh------hHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 276 HGWTD------EHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 276 h~~~d------~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+.... +....+++.+.+.|+|||.++++-+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 43211 1246889999999999999998643
No 118
>PRK00811 spermidine synthase; Provisional
Probab=98.80 E-value=1.9e-08 Score=91.95 Aligned_cols=98 Identities=24% Similarity=0.238 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-----------CCCCeEEeccCCC--CCCC-C-CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-----------FPGVEHVGGDMFE--NVPR-G-DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~D~~~--~~p~-~-D~i 269 (370)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|... ..+. . |+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4578999999999999999997655568999998 888887764 2579999999876 2222 3 999
Q ss_pred EecccccCCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 017495 270 FLKWMLHGWTDEH--CLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 270 ~~~~vLh~~~d~~--~~~iL~~~~~~L~pgG~lli~ 303 (370)
++...-+..+... ...+++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9865433222221 257899999999999998874
No 119
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.80 E-value=2.6e-08 Score=81.83 Aligned_cols=122 Identities=19% Similarity=0.138 Sum_probs=88.3
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------C-CCCeEEeccCCCC-CCC-C-CEEEecccccC
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------F-PGVEHVGGDMFEN-VPR-G-DAIFLKWMLHG 277 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~-~rv~~~~~D~~~~-~p~-~-D~i~~~~vLh~ 277 (370)
.+|||+|||.|.++..|++.-=.-+.+++|. +..++.|+. . +.|+|.+.|+.++ +-. . |+|+=..++..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 3999999999999999998743334677786 666666543 1 4499999999984 322 2 87765444332
Q ss_pred C------ChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCC
Q 017495 278 W------TDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGF 351 (370)
Q Consensus 278 ~------~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf 351 (370)
+ +.......+..+.+.|+|||+++|.-. ..|.+|+.+.++.-||
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------------N~T~dELv~~f~~~~f 198 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------------NFTKDELVEEFENFNF 198 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------------CccHHHHHHHHhcCCe
Confidence 2 122224678899999999999998321 1367889999999999
Q ss_pred CcceEEecC
Q 017495 352 SGLEIVCCA 360 (370)
Q Consensus 352 ~~v~~~~~~ 360 (370)
.....+|.+
T Consensus 199 ~~~~tvp~p 207 (227)
T KOG1271|consen 199 EYLSTVPTP 207 (227)
T ss_pred EEEEeeccc
Confidence 988888775
No 120
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.78 E-value=5.1e-08 Score=85.45 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=73.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC---C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR---G 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~---~ 266 (370)
.++..+. ..+..+|||||||+|..+..+++... +++++|. +.+++.++++ .+++++.+|..+..+. .
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 3344444 66778999999999999987777653 7888997 7777766542 4689999998774432 2
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|+|++...++++ .+.+.+.|+|||++++.-.
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 999998776654 3457789999999998543
No 121
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.75 E-value=1.5e-08 Score=86.20 Aligned_cols=146 Identities=17% Similarity=0.125 Sum_probs=98.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCC-eEEecc---CCCCC-CC-CC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGV-EHVGGD---MFENV-PR-GD 267 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv-~~~~~D---~~~~~-p~-~D 267 (370)
+++.+...+ ..+..++||+|||||.....|...-. +.+++|+ ..|++.+.+++-. +..+.| |.+.. ++ .|
T Consensus 114 l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D 190 (287)
T COG4976 114 LAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD 190 (287)
T ss_pred HHHHHHhcc-CCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence 344444444 44589999999999999988877643 4577888 8888888765211 111111 33322 22 39
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHH
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 347 (370)
+|....||-++. ....++-.+...|+|||.+.+.-...++... +...... -...+..-..++++
T Consensus 191 Li~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~--------f~l~ps~------RyAH~~~YVr~~l~ 254 (287)
T COG4976 191 LIVAADVLPYLG--ALEGLFAGAAGLLAPGGLFAFSVETLPDDGG--------FVLGPSQ------RYAHSESYVRALLA 254 (287)
T ss_pred chhhhhHHHhhc--chhhHHHHHHHhcCCCceEEEEecccCCCCC--------eecchhh------hhccchHHHHHHHH
Confidence 999999999877 4578999999999999999997665554311 1111000 11124566788999
Q ss_pred hCCCCcceEEec
Q 017495 348 NSGFSGLEIVCC 359 (370)
Q Consensus 348 ~aGf~~v~~~~~ 359 (370)
..||+++++.++
T Consensus 255 ~~Gl~~i~~~~t 266 (287)
T COG4976 255 ASGLEVIAIEDT 266 (287)
T ss_pred hcCceEEEeecc
Confidence 999999998876
No 122
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.3e-07 Score=85.47 Aligned_cols=118 Identities=24% Similarity=0.302 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CCCe----EEeccCCCCCCC---CCEEEeccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PGVE----HVGGDMFENVPR---GDAIFLKWM 274 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~----~~~~D~~~~~p~---~D~i~~~~v 274 (370)
.++.+|||+|||+|-++++.++- .-.+++++|+ |..++.++++ +.|. ....+..+ .+. .|+|+++ +
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~-~~~~~~~DvIVAN-I 237 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE-VPENGPFDVIVAN-I 237 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh-hcccCcccEEEeh-h
Confidence 37899999999999999988874 4457899998 8888877754 3344 33333332 222 3998764 4
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGL 354 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v 354 (370)
|- +-...+...+.+.++|||++++.-.... ..+...+.+.++||.++
T Consensus 238 LA----~vl~~La~~~~~~lkpgg~lIlSGIl~~-----------------------------q~~~V~~a~~~~gf~v~ 284 (300)
T COG2264 238 LA----EVLVELAPDIKRLLKPGGRLILSGILED-----------------------------QAESVAEAYEQAGFEVV 284 (300)
T ss_pred hH----HHHHHHHHHHHHHcCCCceEEEEeehHh-----------------------------HHHHHHHHHHhCCCeEe
Confidence 53 3456899999999999999998664321 14567788889999998
Q ss_pred eEEec
Q 017495 355 EIVCC 359 (370)
Q Consensus 355 ~~~~~ 359 (370)
++..-
T Consensus 285 ~~~~~ 289 (300)
T COG2264 285 EVLER 289 (300)
T ss_pred EEEec
Confidence 87665
No 123
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=3e-07 Score=83.73 Aligned_cols=123 Identities=25% Similarity=0.315 Sum_probs=89.2
Q ss_pred eEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCCC-CEEEec--ccccC--
Q 017495 210 VLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPRG-DAIFLK--WMLHG-- 277 (370)
Q Consensus 210 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~~-D~i~~~--~vLh~-- 277 (370)
+|||+|||+|..+..++.++|..+++++|+ |..++.|+.+ .++.++.+|.+++.+.. |+|+++ ++-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999998 9888877653 45667777888865544 888773 12111
Q ss_pred -CC----------------h--hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccC
Q 017495 278 -WT----------------D--EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERS 338 (370)
Q Consensus 278 -~~----------------d--~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t 338 (370)
.. + +-...++..+.+.|+|||.+++ |.-. + .
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~-------------------------~----q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGL-------------------------T----Q 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECC-------------------------C----c
Confidence 10 0 1235788899999999887776 2211 0 1
Q ss_pred HHHHHHHHHhCC-CCcceEEecCCC
Q 017495 339 KKEYEALAKNSG-FSGLEIVCCAYN 362 (370)
Q Consensus 339 ~~e~~~ll~~aG-f~~v~~~~~~~~ 362 (370)
.+...+++.+.| |..+.......+
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~~g 267 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDLFG 267 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecCCC
Confidence 567889999999 676666665433
No 124
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.72 E-value=7.5e-07 Score=79.83 Aligned_cols=99 Identities=16% Similarity=0.160 Sum_probs=81.3
Q ss_pred CCCeEEEEcCcccH----HHHHHHhhCC-----CCeEEEeeh-hhHHHhCCCC---------------------------
Q 017495 207 GLKVLVDVGGGIGV----TLGMITSRYP-----CIKGISFDL-PHVLANAPSF--------------------------- 249 (370)
Q Consensus 207 ~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-p~~~~~a~~~--------------------------- 249 (370)
+..+|.-+||+||. +++.+.+.+| .+++++.|+ ..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 57899999999993 5556667775 478899998 8888877531
Q ss_pred --------CCCeEEeccCCCCC--CCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 250 --------PGVEHVGGDMFENV--PRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 250 --------~rv~~~~~D~~~~~--p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
..|.|..+|..++. +.. |+|+|.+||-+++.+.-.+++++.+..|+|||.|++-..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 24899999999843 344 999999999999999889999999999999999999443
No 125
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.5e-07 Score=82.17 Aligned_cols=105 Identities=19% Similarity=0.249 Sum_probs=85.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC-CCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN-VPR 265 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~-~p~ 265 (370)
..++.... ..+..+|+|.|.|+|.++..|+.. .|.-+++.+|. ++..+.|+++ ++|++..+|+.+. .++
T Consensus 84 ~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 84 GYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence 34555555 889999999999999999999974 57789999997 8888877753 5699999999883 333
Q ss_pred C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 266 G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
. |+|++ +++++ -.+|.+++++|+|||.+++.-++.+
T Consensus 163 ~vDav~L-----Dmp~P--W~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 163 DVDAVFL-----DLPDP--WNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred ccCEEEE-----cCCCh--HHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 4 98887 56766 4889999999999999999777653
No 126
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.70 E-value=2.3e-08 Score=65.33 Aligned_cols=51 Identities=61% Similarity=0.875 Sum_probs=42.7
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHh
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLA 90 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~ 90 (370)
++|++|++|||||.+... | ++|+|++||+.++..++|.++..|+|+||.|+
T Consensus 1 MaLk~aveLgI~dii~~~-----g-~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNA-----G-GGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHH-----T-TS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHc-----C-CCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 589999999999999887 3 36999999999999436667889999999985
No 127
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.69 E-value=4.5e-07 Score=79.55 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=88.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCCCeEEeccCCCCCCCC-CEEEecccccCCChhHHHH
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFENVPRG-DAIFLKWMLHGWTDEHCLK 285 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~~p~~-D~i~~~~vLh~~~d~~~~~ 285 (370)
...++||||+|.|..+..++..|..+.+|-.. +.|....+++ .++++..|-....+.. |+|.|.++|--..++ ..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S-~~Mr~rL~~k-g~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~~ 169 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEAS-PPMRWRLSKK-GFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--LT 169 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCC-HHHHHHHHhC-CCeEEehhhhhccCCceEEEeehhhhhccCCH--HH
Confidence 45789999999999999999988775555444 4444433332 3444433322222223 999999999776555 69
Q ss_pred HHHHHHHhCCCCcEEEEEeecCC-----CCC--CCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEe
Q 017495 286 LLKNCWEALPENGKVIIVESILP-----LVP--ENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 286 iL~~~~~~L~pgG~lli~e~~~~-----~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~ 358 (370)
+|+.++++|+|+|++++.--..- .++ ..++. ..+++ .+...+-..+.+.+.|+.+||+++++..
T Consensus 170 LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~----e~l~~-----~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPS----ELLPV-----KGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred HHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCch----hhcCC-----CCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 99999999999999998543211 111 00110 01110 1111111234455899999999999988
Q ss_pred cC
Q 017495 359 CA 360 (370)
Q Consensus 359 ~~ 360 (370)
.|
T Consensus 241 ~P 242 (265)
T PF05219_consen 241 LP 242 (265)
T ss_pred cC
Confidence 75
No 128
>PRK01581 speE spermidine synthase; Validated
Probab=98.68 E-value=7.6e-08 Score=89.16 Aligned_cols=98 Identities=18% Similarity=0.088 Sum_probs=73.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------------CCCCeEEeccCCCC--C-CCC-C
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------------FPGVEHVGGDMFEN--V-PRG-D 267 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------------~~rv~~~~~D~~~~--~-p~~-D 267 (370)
..+.+||+||||+|..+..+++..+..+++.+|+ |.+++.++. .+|++++.+|..+. . +.. |
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4578999999999999999988655678999999 999888774 26899999998872 2 223 9
Q ss_pred EEEeccccc---CCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 268 AIFLKWMLH---GWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 268 ~i~~~~vLh---~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
+|++...-. ....--...+++.+++.|+|||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999863210 001111257899999999999998875
No 129
>PLN02366 spermidine synthase
Probab=98.68 E-value=9.8e-08 Score=87.79 Aligned_cols=98 Identities=24% Similarity=0.200 Sum_probs=72.8
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------CCCeEEeccCCC---CCCC--CCEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----------PGVEHVGGDMFE---NVPR--GDAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~D~~~---~~p~--~D~i 269 (370)
+++.+||+||||.|..+..+++..+..+++.+|+ +.+++.++++ +|++++.+|... ..+. .|+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4678999999999999999987533457889998 7788876652 589999999764 2332 3999
Q ss_pred EecccccCCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 017495 270 FLKWMLHGWTDEH--CLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 270 ~~~~vLh~~~d~~--~~~iL~~~~~~L~pgG~lli~ 303 (370)
++...-+..+... ...+++.+++.|+|||.+++.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9854333222111 347899999999999998763
No 130
>PRK03612 spermidine synthase; Provisional
Probab=98.66 E-value=2e-07 Score=92.29 Aligned_cols=98 Identities=20% Similarity=0.287 Sum_probs=74.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC-------------CCCeEEeccCCC---CCCCC-
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF-------------PGVEHVGGDMFE---NVPRG- 266 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~-------------~rv~~~~~D~~~---~~p~~- 266 (370)
+++.+|||||||+|..+..+++ +|. .+++.+|+ |++++.++++ +|++++.+|..+ ..++.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4578999999999999999987 465 78999998 9999987761 579999999876 22334
Q ss_pred CEEEecccccCCChh---HHHHHHHHHHHhCCCCcEEEEEe
Q 017495 267 DAIFLKWMLHGWTDE---HCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 267 D~i~~~~vLh~~~d~---~~~~iL~~~~~~L~pgG~lli~e 304 (370)
|+|++...-...+.. -..++++.+++.|+|||.+++.-
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999987432221111 02368999999999999988753
No 131
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.64 E-value=9.7e-08 Score=86.82 Aligned_cols=98 Identities=21% Similarity=0.218 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------CCCeEEeccCCC--C-CCCC-CEEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----------PGVEHVGGDMFE--N-VPRG-DAIF 270 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~D~~~--~-~p~~-D~i~ 270 (370)
+.+.+||+||||+|..+..+++..+..+++++|+ +.+++.+++. ++++++.+|..+ . .+.. |+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999999988766678999998 8887766542 478888888765 1 1233 9999
Q ss_pred ecccccCCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 017495 271 LKWMLHGWTDEH--CLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 271 ~~~vLh~~~d~~--~~~iL~~~~~~L~pgG~lli~ 303 (370)
+...-..-+... ...+++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 866533222222 358899999999999999985
No 132
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.62 E-value=1.2e-07 Score=86.29 Aligned_cols=136 Identities=21% Similarity=0.232 Sum_probs=88.4
Q ss_pred HHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeE
Q 017495 183 FNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEH 254 (370)
Q Consensus 183 ~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~ 254 (370)
|-.+-+..+..-++.+.+ + ..+..+|||||||+|-+++..++. .-.+++++|. |.+++.++++ +++.+
T Consensus 140 FGTG~H~TT~lcl~~l~~-~--~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v 215 (295)
T PF06325_consen 140 FGTGHHPTTRLCLELLEK-Y--VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGVEDRIEV 215 (295)
T ss_dssp S-SSHCHHHHHHHHHHHH-H--SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE
T ss_pred ccCCCCHHHHHHHHHHHH-h--ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE
Confidence 333344444444433333 3 235679999999999999988775 3447999998 8888877653 33433
Q ss_pred EeccCCCCCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcC
Q 017495 255 VGGDMFENVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTT 332 (370)
Q Consensus 255 ~~~D~~~~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 332 (370)
.. ..+.+.. |+|+.+ ++ .+-...++..+.+.|+|||+|++.-.....
T Consensus 216 --~~-~~~~~~~~~dlvvAN-I~----~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~----------------------- 264 (295)
T PF06325_consen 216 --SL-SEDLVEGKFDLVVAN-IL----ADVLLELAPDIASLLKPGGYLILSGILEEQ----------------------- 264 (295)
T ss_dssp --SC-TSCTCCS-EEEEEEE-S-----HHHHHHHHHHCHHHEEEEEEEEEEEEEGGG-----------------------
T ss_pred --EE-ecccccccCCEEEEC-CC----HHHHHHHHHHHHHhhCCCCEEEEccccHHH-----------------------
Confidence 21 1223323 998864 43 245678889999999999999996654321
Q ss_pred CCcccCHHHHHHHHHhCCCCcceEEecC
Q 017495 333 GGRERSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 333 ~~~~~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
.+++.+.+++ ||+.++.....
T Consensus 265 ------~~~v~~a~~~-g~~~~~~~~~~ 285 (295)
T PF06325_consen 265 ------EDEVIEAYKQ-GFELVEEREEG 285 (295)
T ss_dssp ------HHHHHHHHHT-TEEEEEEEEET
T ss_pred ------HHHHHHHHHC-CCEEEEEEEEC
Confidence 4567777776 99988877653
No 133
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.62 E-value=1.7e-07 Score=86.68 Aligned_cols=99 Identities=21% Similarity=0.286 Sum_probs=73.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCC------CCCCeEEeccCCCCCC--C-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPS------FPGVEHVGGDMFENVP--R- 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~~~p--~- 265 (370)
.++..++ .++..+|||||||+|.++..+++..+. ..++++|. +.+++.+++ .+++.++.+|..+..+ .
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 4444444 567789999999999999999998764 46899998 887776653 2568999999876332 2
Q ss_pred CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 266 GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 266 ~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
.|+|++...+++.+ ..+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 39999886665432 34678999999998854
No 134
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=4.6e-07 Score=77.37 Aligned_cols=100 Identities=15% Similarity=0.238 Sum_probs=78.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC-C
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR-G 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~-~ 266 (370)
...++..+. .++..+|||||||+|..+.-|++... +++.++. +...+.|+++ .+|.++.+|-..-+|+ +
T Consensus 61 vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 61 VARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 334555565 78889999999999999988887654 7888887 7777777652 5699999999986664 3
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|.|+.....-..|+ .+.+.|+|||++++..-
T Consensus 138 PyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 99999887766663 35678999999999665
No 135
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.55 E-value=5.8e-07 Score=79.84 Aligned_cols=96 Identities=11% Similarity=0.134 Sum_probs=74.4
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCC--------CC-C
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENV--------PR-G 266 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~--------p~-~ 266 (370)
..++.+|||||||+|..+..++...+ +.+++.+|. ++.++.++++ ++++++.+|..+.. .. .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 44678999999999999999998865 679999998 8887777642 57999999997621 12 3
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|+|++-. ..+.-..++..+.+.|+|||.|++-+.
T Consensus 146 D~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 9998742 234556889999999999998776443
No 136
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.54 E-value=2.9e-07 Score=79.33 Aligned_cols=92 Identities=23% Similarity=0.332 Sum_probs=66.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCe-------EEeccCCCCC--CCC-CEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVE-------HVGGDMFENV--PRG-DAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~-------~~~~D~~~~~--p~~-D~i~~~~vL 275 (370)
....++|||||+|..++-+++.|. ++++.|. +.+++.+++..+++ ....++.+-. ++. |+|++..++
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 344899999999988888888764 5788887 88999888764432 2222222211 334 999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCCc-EEEEE
Q 017495 276 HGWTDEHCLKLLKNCWEALPENG-KVIIV 303 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG-~lli~ 303 (370)
|.++- ..+.+.++++|||.| .+++-
T Consensus 111 HWFdl---e~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 111 HWFDL---ERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred Hhhch---HHHHHHHHHHcCCCCCEEEEE
Confidence 97663 588999999999876 55543
No 137
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.53 E-value=3e-07 Score=77.57 Aligned_cols=102 Identities=13% Similarity=0.221 Sum_probs=69.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----CCCeEEeccCCC-CCCCC--CE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----PGVEHVGGDMFE-NVPRG--DA 268 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~-~~p~~--D~ 268 (370)
.+++.+. ..+..+|||||||+|.++..++++ ..+++++|. +.+++.+++. ++++++.+|+.+ +.+.. |.
T Consensus 4 ~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 4 KIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred HHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCE
Confidence 4555555 667789999999999999999987 468899998 7777766542 579999999988 55543 77
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
|++ +..++...+....+++.. .+.++|.+++..
T Consensus 81 vi~-n~Py~~~~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 81 VVG-NLPYNISTPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred EEE-CCCcccHHHHHHHHHhcC--CCcceEEEEEEH
Confidence 765 455555443333333321 133566665543
No 138
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.50 E-value=1.4e-07 Score=81.86 Aligned_cols=102 Identities=19% Similarity=0.271 Sum_probs=73.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC-
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR- 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~- 265 (370)
...++..+. ..+..+|||||||+|..+..++.... .-+++.+|. +...+.+++. .+|.++.+|....+++
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 345666666 78889999999999999998888754 446889997 8888777653 5799999998875553
Q ss_pred C--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 266 G--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 266 ~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+ |.|++.......+. .+.+.|++||+|++.-.
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEEc
Confidence 2 99999888865542 35577999999998443
No 139
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.50 E-value=7.5e-07 Score=86.38 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=78.0
Q ss_pred HhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCC---CC-C-CCE
Q 017495 200 DVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFEN---VP-R-GDA 268 (370)
Q Consensus 200 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~---~p-~-~D~ 268 (370)
..++ ..+..+|||+|||+|..+..+++..++.+++++|. +.+++.++++ -+++++.+|+.+. .+ . .|.
T Consensus 238 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 238 TLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDR 316 (427)
T ss_pred HHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCE
Confidence 3444 55678999999999999999999988789999998 8887776542 2468899998762 22 2 399
Q ss_pred EEecc------ccc-------CCChhH-------HHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 269 IFLKW------MLH-------GWTDEH-------CLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 269 i~~~~------vLh-------~~~d~~-------~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
|++.- ++. ....++ -.++|+.+.+.|+|||+|++.....
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 98421 111 112221 2479999999999999999888644
No 140
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.49 E-value=7e-07 Score=87.09 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=75.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCC---CCCC-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFEN---VPRG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~---~p~~-D~i~~~ 272 (370)
..+..+|||+|||+|..+..+++.. +..+++++|+ +..++.++++ .+++++.+|+.+. ++.. |+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 5567899999999999999999986 6779999998 8777666432 3589999998762 3333 999873
Q ss_pred c------cccC-------CChhH-------HHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 273 W------MLHG-------WTDEH-------CLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 273 ~------vLh~-------~~d~~-------~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
- ++.+ ++..+ ...+|+.+.+.|||||+|+......
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 1 1111 11122 1468999999999999999766544
No 141
>PLN02672 methionine S-methyltransferase
Probab=98.48 E-value=1.3e-06 Score=91.80 Aligned_cols=122 Identities=18% Similarity=0.136 Sum_probs=87.4
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------------------CCCeEEeccCCCCCC
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----------------------PGVEHVGGDMFENVP 264 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------------------~rv~~~~~D~~~~~p 264 (370)
..+|||+|||+|..+..+++.+|..+++++|+ +.+++.++.+ +|++++.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999999999998 8888766321 379999999988543
Q ss_pred C----CCEEEec--ccccC----CC--------------------------hh----HHHHHHHHHHHhCCCCcEEEEEe
Q 017495 265 R----GDAIFLK--WMLHG----WT--------------------------DE----HCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 265 ~----~D~i~~~--~vLh~----~~--------------------------d~----~~~~iL~~~~~~L~pgG~lli~e 304 (370)
. .|+|+++ ++... ++ ++ -...++..+.+.|+|||.+++ |
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-E 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-N 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-E
Confidence 2 2888773 12110 00 01 125778888889999998775 3
Q ss_pred ecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHH-HHHHhCCCCcceEEec
Q 017495 305 SILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYE-ALAKNSGFSGLEIVCC 359 (370)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~-~ll~~aGf~~v~~~~~ 359 (370)
.-. ...+.+. +++++.||+.++++..
T Consensus 278 iG~-----------------------------~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 278 MGG-----------------------------RPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred ECc-----------------------------cHHHHHHHHHHHHCCCCeeEEeee
Confidence 211 1134566 6888899998887765
No 142
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.47 E-value=8.6e-07 Score=86.41 Aligned_cols=104 Identities=20% Similarity=0.194 Sum_probs=76.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC-C-CCEEEec--
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP-R-GDAIFLK-- 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p-~-~D~i~~~-- 272 (370)
..+..+|||+|||+|..+..+++..+ ..+++++|. +.+++.++++ .+|+++.+|+.+..+ . .|+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 44668999999999999999988764 458999998 8887766542 468899999877323 2 3999862
Q ss_pred ----ccc-------cCCChhHH-------HHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 273 ----WML-------HGWTDEHC-------LKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 273 ----~vL-------h~~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.++ ++++.++. ..+|+++.+.|+|||+|+.......
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 111 22333222 3689999999999999999887654
No 143
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.46 E-value=7.3e-07 Score=86.45 Aligned_cols=110 Identities=16% Similarity=0.189 Sum_probs=79.1
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------C-CCeEEeccCCC-CC--C-C
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------P-GVEHVGGDMFE-NV--P-R 265 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~-rv~~~~~D~~~-~~--p-~ 265 (370)
++..++ ..+..+|||+|||+|..+..+++..+..+++++|. +..++.++++ . ++.+..+|... .. + .
T Consensus 230 ~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~ 308 (426)
T TIGR00563 230 VATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE 308 (426)
T ss_pred HHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence 333444 55678999999999999999999888789999998 8777766532 1 23346677654 21 2 2
Q ss_pred -CCEEEe------cccccCCCh-------hH-------HHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 266 -GDAIFL------KWMLHGWTD-------EH-------CLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 266 -~D~i~~------~~vLh~~~d-------~~-------~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.|.|++ ..+++..++ ++ -.++|+++.+.|||||+|+..+....
T Consensus 309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 299986 235655443 11 25899999999999999999888764
No 144
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.46 E-value=3.2e-07 Score=78.96 Aligned_cols=91 Identities=23% Similarity=0.373 Sum_probs=67.0
Q ss_pred eEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCCC----CC-CC-CEEEeccccc
Q 017495 210 VLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFEN----VP-RG-DAIFLKWMLH 276 (370)
Q Consensus 210 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~~----~p-~~-D~i~~~~vLh 276 (370)
.+||||||.|.++..++..+|+..++++|. ...+..+.. ..++.++.+|+..- ++ .. |-|++.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~---- 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN---- 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE----
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe----
Confidence 899999999999999999999999999997 555554432 37899999998771 23 23 555542
Q ss_pred CCChhH-----------HHHHHHHHHHhCCCCcEEEEEee
Q 017495 277 GWTDEH-----------CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 277 ~~~d~~-----------~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+||+. ...+|+.+++.|+|||.|.+..-
T Consensus 96 -FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 96 -FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp -S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 34442 14899999999999999988654
No 145
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.44 E-value=5.7e-07 Score=79.79 Aligned_cols=126 Identities=17% Similarity=0.220 Sum_probs=89.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCC--
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVP-- 264 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p-- 264 (370)
.++..++ ..+..+|||.|.|+|.++..|++. .|.-+++.+|. ++..+.|+++ ++|++...|+.+ .++
T Consensus 31 ~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 31 YILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 4555565 889999999999999999999976 68889999997 7777766542 579999999965 332
Q ss_pred --CC-CEEEecccccCCChhHHHHHHHHHHHhC-CCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHH
Q 017495 265 --RG-DAIFLKWMLHGWTDEHCLKLLKNCWEAL-PENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKK 340 (370)
Q Consensus 265 --~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L-~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 340 (370)
.. |.|++ +++++ -.+|..+.++| +|||++++.-++... ..
T Consensus 110 ~~~~~DavfL-----Dlp~P--w~~i~~~~~~L~~~gG~i~~fsP~ieQ-----------------------------v~ 153 (247)
T PF08704_consen 110 LESDFDAVFL-----DLPDP--WEAIPHAKRALKKPGGRICCFSPCIEQ-----------------------------VQ 153 (247)
T ss_dssp -TTSEEEEEE-----ESSSG--GGGHHHHHHHE-EEEEEEEEEESSHHH-----------------------------HH
T ss_pred ccCcccEEEE-----eCCCH--HHHHHHHHHHHhcCCceEEEECCCHHH-----------------------------HH
Confidence 22 88887 56766 36799999999 899999997665421 12
Q ss_pred HHHHHHHhCCCCcceEEec
Q 017495 341 EYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 341 e~~~ll~~aGf~~v~~~~~ 359 (370)
...+.|++.||..+++..+
T Consensus 154 ~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 154 KTVEALREHGFTDIETVEV 172 (247)
T ss_dssp HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHCCCeeeEEEEE
Confidence 3445667789988876655
No 146
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.43 E-value=5.9e-07 Score=76.23 Aligned_cols=96 Identities=17% Similarity=0.263 Sum_probs=71.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCC-CCeEEeccCCC--CCCCC--CEEEeccccc----
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFP-GVEHVGGDMFE--NVPRG--DAIFLKWMLH---- 276 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~-rv~~~~~D~~~--~~p~~--D~i~~~~vLh---- 276 (370)
...-|||||||+|..+..|.+ ++...+++|+ |.|++.+.+.. .-.+..+|+-+ |++++ |-+++...+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSD--SGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred CCcEEEEeccCCCcchheecc--CCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecc
Confidence 478999999999998888777 6688999998 99999887521 13578888888 55555 8776644432
Q ss_pred -----CCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 277 -----GWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 277 -----~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
|.|..-...++..++.+|++|++.++.-
T Consensus 128 A~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 128 ADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred cCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 1233334578899999999999988743
No 147
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.41 E-value=1.2e-06 Score=85.16 Aligned_cols=103 Identities=19% Similarity=0.114 Sum_probs=77.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-C----CCC-C-CEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-N----VPR-G-DAI 269 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~----~p~-~-D~i 269 (370)
..+..+|||+|||+|..+..+++... ..+++++|. +..++.++++ .+|+++.+|..+ + ... . |.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 55678999999999999999998864 468999998 7777766542 468999999876 2 222 2 999
Q ss_pred Eec------ccccCCCh-------hH-------HHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 270 FLK------WMLHGWTD-------EH-------CLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 270 ~~~------~vLh~~~d-------~~-------~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
++. .++++.++ ++ -.++|+++.+.|||||+|+..+...
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 872 34544333 11 2588999999999999999877655
No 148
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.40 E-value=5.6e-06 Score=70.81 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=90.5
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCCCeEEeccCCC-CCCC----C-CEEEecccccCCChh
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFE-NVPR----G-DAIFLKWMLHGWTDE 281 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~-~~p~----~-D~i~~~~vLh~~~d~ 281 (370)
..++|||||=+...... .++-..++.+|+... .-.+...||++ |.|. . |+|.++-||.+.|++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~--------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ--------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC--------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 47999999986654433 345566888898321 23567889988 7763 2 999999999999977
Q ss_pred -HHHHHHHHHHHhCCCCcE-----EEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcce
Q 017495 282 -HCLKLLKNCWEALPENGK-----VIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLE 355 (370)
Q Consensus 282 -~~~~iL~~~~~~L~pgG~-----lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~ 355 (370)
+.-.+|+++++.|+|+|. |+|+-+.. +. .+.+..+.+.|.++++.-||..++
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~---------------------Cv-~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP---------------------CV-TNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCch---------------------Hh-hcccccCHHHHHHHHHhCCcEEEE
Confidence 456999999999999999 77753321 11 266677889999999999999998
Q ss_pred EEecC
Q 017495 356 IVCCA 360 (370)
Q Consensus 356 ~~~~~ 360 (370)
.....
T Consensus 179 ~~~~~ 183 (219)
T PF11968_consen 179 YKKSK 183 (219)
T ss_pred EEecC
Confidence 76653
No 149
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.38 E-value=1.2e-06 Score=75.78 Aligned_cols=112 Identities=21% Similarity=0.312 Sum_probs=70.9
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC---------------CCCCeEEecc
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS---------------FPGVEHVGGD 258 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---------------~~rv~~~~~D 258 (370)
+..+++.+. +.+...++|||||.|....+.+-..+.-+.+++++ +...+.+.. ..++++..+|
T Consensus 31 ~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 31 VSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 345556665 77788999999999999998887777667999987 655543321 2468899999
Q ss_pred CCC-C-----CCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCC
Q 017495 259 MFE-N-----VPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLV 310 (370)
Q Consensus 259 ~~~-~-----~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~ 310 (370)
+.+ + +.++|+|++++.+. + ++....|.+....||||.+++-.....+..
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred ccccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence 987 3 24569999998864 3 455666788889999999998877766653
No 150
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.35 E-value=2.2e-06 Score=83.04 Aligned_cols=104 Identities=13% Similarity=0.160 Sum_probs=76.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-C-C-CCC-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-N-V-PRG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~-~-p~~-D~i~~~ 272 (370)
..+..+|||+|||+|..+.++++.. +..+++++|+ +..++.++++ .++++..+|... + . ++. |.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5567899999999999999999886 4678999998 8877766542 357899999875 2 2 223 999861
Q ss_pred ------ccccC-------CChhHH-------HHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 273 ------WMLHG-------WTDEHC-------LKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 273 ------~vLh~-------~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.++.. ++.++. .++|.++.+.|||||.|+.......
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 12221 222111 5789999999999999988777654
No 151
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.35 E-value=3e-06 Score=71.66 Aligned_cols=101 Identities=20% Similarity=0.159 Sum_probs=67.1
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC---------CCCCeEEeccCCCCC------CCC-CE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS---------FPGVEHVGGDMFENV------PRG-DA 268 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~---------~~rv~~~~~D~~~~~------p~~-D~ 268 (370)
..+..+|||+|||+|..++.++..++..+++..|.+++++..+. ..++.+...|..++. +.. |+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34678999999999999999988877788999998556654332 256888888876521 223 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
|+.+.++|+ ++....+++.+.+.|+|+|.+++.....
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999986 5667899999999999999988776655
No 152
>PHA03412 putative methyltransferase; Provisional
Probab=98.34 E-value=2.8e-06 Score=74.19 Aligned_cols=92 Identities=13% Similarity=0.073 Sum_probs=67.9
Q ss_pred CCeEEEEcCcccHHHHHHHhhC---CCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCC-CCCCC-CEEEecccccCCC-
Q 017495 208 LKVLVDVGGGIGVTLGMITSRY---PCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFE-NVPRG-DAIFLKWMLHGWT- 279 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~-~~p~~-D~i~~~~vLh~~~- 279 (370)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.++.. .++.++..|+.. +.... |+|+++==.+...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999998875 4578999998 8888888764 578999999986 33333 9999853332111
Q ss_pred -h--------hHHHHHHHHHHHhCCCCcE
Q 017495 280 -D--------EHCLKLLKNCWEALPENGK 299 (370)
Q Consensus 280 -d--------~~~~~iL~~~~~~L~pgG~ 299 (370)
+ .-...+++++.++++||+.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1 1134688999987777664
No 153
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.33 E-value=1.8e-06 Score=80.24 Aligned_cols=98 Identities=21% Similarity=0.231 Sum_probs=69.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------------C----CCeEEeccCCCC------C
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------------P----GVEHVGGDMFEN------V 263 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------------~----rv~~~~~D~~~~------~ 263 (370)
+..+|||+|||-|+=+.--... .-..++++|+ +..++.++++ . ...|+.+|.+.. .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 6789999999988766655553 2346889998 6667766531 1 245678887751 2
Q ss_pred CC--C-CEEEecccccCC--ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 264 PR--G-DAIFLKWMLHGW--TDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 264 p~--~-D~i~~~~vLh~~--~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+. . |+|-|.+.||+. +.+.+..+|+++.+.|+|||+++...+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 22 2 999999999994 555677899999999999999998665
No 154
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.32 E-value=3.6e-06 Score=76.22 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=74.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCC--CCCEEEec-
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVP--RGDAIFLK- 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p--~~D~i~~~- 272 (370)
..+..+|||+|||+|..+..+++... ...++++|. +..++.++++ .+|.++..|... +.. ..|.|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45678999999999999999988875 358999998 7777665532 457888888755 222 23999862
Q ss_pred -----cccc-------CCChhHH-------HHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 273 -----WMLH-------GWTDEHC-------LKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 273 -----~vLh-------~~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.++. .|++++. .++|+.+.+.|||||+|+.......
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 1221 2333322 4699999999999999988776543
No 155
>PLN02476 O-methyltransferase
Probab=98.27 E-value=4.4e-06 Score=75.33 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=75.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCC--------CCC-
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENV--------PRG- 266 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~--------p~~- 266 (370)
..++++|||||+++|..+.+++...| +.+++.+|. ++..+.++++ ++|+++.||..+.. ...
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 55689999999999999999999875 567899998 7777777542 58999999987621 122
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|+|++-. +..+-..++..+.+.|+|||.|++-+..
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 9988742 3456778999999999999998774443
No 156
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.27 E-value=1.2e-05 Score=65.47 Aligned_cols=109 Identities=20% Similarity=0.287 Sum_probs=86.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhC-CCCCCCeEEeccCCC-C-----CCC--
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANA-PSFPGVEHVGGDMFE-N-----VPR-- 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a-~~~~rv~~~~~D~~~-~-----~p~-- 265 (370)
...+.++ +....-|||+|.|||.++.+++++. +....+.++. ++..... +.++.++++.||.+. . .+.
T Consensus 39 ~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~ 117 (194)
T COG3963 39 KMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQF 117 (194)
T ss_pred HHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCe
Confidence 3444455 7788899999999999999998874 5556677765 6655544 345889999999987 2 222
Q ss_pred CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 266 GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 266 ~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
.|.|++.--+-.++.....++|+.+...|++||.++.....
T Consensus 118 ~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 118 FDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 29999998888899888899999999999999999987765
No 157
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.26 E-value=1.2e-06 Score=75.74 Aligned_cols=96 Identities=18% Similarity=0.219 Sum_probs=74.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC-------CC-CC-C
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN-------VP-RG-D 267 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~-------~p-~~-D 267 (370)
.++++|||||+++|..+.++++..| +.+++.+|. |+..+.+++. ++|+++.+|..+. .+ .. |
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3678999999999999999999987 589999998 8777776542 6899999998752 11 12 9
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+|++-.- ..+-...+..+.+.|+|||.+++-+..
T Consensus 124 ~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 124 FVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp EEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred EEEEccc-----ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 9998542 345678899999999999988875543
No 158
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.24 E-value=4.9e-06 Score=72.14 Aligned_cols=99 Identities=15% Similarity=0.223 Sum_probs=78.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEe-ccCCCCC----CCC-CEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVG-GDMFENV----PRG-DAI 269 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~-~D~~~~~----p~~-D~i 269 (370)
.+++++|||||.+.|..+.+++...| +.+.+.+|. |+..+.|+++ ++|+++. +|..+.. .+. |+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 55789999999999999999999999 889999998 8888888763 5688888 5877621 223 999
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
++-. ...+-..+|..+.+.|+|||.+++-+...+
T Consensus 137 FIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 137 FIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 9843 234556899999999999998887554443
No 159
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.21 E-value=2.9e-06 Score=74.41 Aligned_cols=92 Identities=20% Similarity=0.337 Sum_probs=68.9
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC---C-CCC-C-CEEEecccc
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE---N-VPR-G-DAIFLKWML 275 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~---~-~p~-~-D~i~~~~vL 275 (370)
..+||||||.|.++..+++++|+..+++++. ..++..+.. ..++.++++|... . .+. . |-|++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~--- 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN--- 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE---
Confidence 5899999999999999999999999999996 444443322 1378999999876 2 334 2 555543
Q ss_pred cCCChhH-----------HHHHHHHHHHhCCCCcEEEEEee
Q 017495 276 HGWTDEH-----------CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 276 h~~~d~~-----------~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+||+- ...+|+.+.+.|+|||.|.+..-
T Consensus 127 --FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 127 --FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred --CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 23321 13789999999999999998653
No 160
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.18 E-value=5.8e-06 Score=74.88 Aligned_cols=97 Identities=25% Similarity=0.327 Sum_probs=76.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------CCCeEEeccCCC---CCCCC-CEEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----------PGVEHVGGDMFE---NVPRG-DAIFL 271 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~D~~~---~~p~~-D~i~~ 271 (370)
.+++||-||+|.|..+..+++..+-.+++.+|+ |.+++.++++ +|++++..|..+ ..+.. |+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 447999999999999999999888889999999 9999988753 689999999887 34443 99998
Q ss_pred cccccCCChh--HHHHHHHHHHHhCCCCcEEEEE
Q 017495 272 KWMLHGWTDE--HCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 272 ~~vLh~~~d~--~~~~iL~~~~~~L~pgG~lli~ 303 (370)
-..=.--+.+ --..+++.|+++|+|+|.++..
T Consensus 156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 156 DSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred cCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 5442210000 0258999999999999999986
No 161
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.18 E-value=8.6e-06 Score=73.37 Aligned_cols=91 Identities=15% Similarity=0.253 Sum_probs=63.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCC-CCCCCC-
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFE-NVPRGD- 267 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~-~~p~~D- 267 (370)
...+++.+. ..+..+|||||||+|.++..++++.+. ++++|. +.+++.++. ..+++++.+|+.+ +.+..|
T Consensus 18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 445666555 667789999999999999999998864 777776 666665543 3679999999987 554334
Q ss_pred -EEEecccccCCChhHHHHHHHHHHH
Q 017495 268 -AIFLKWMLHGWTDEHCLKLLKNCWE 292 (370)
Q Consensus 268 -~i~~~~vLh~~~d~~~~~iL~~~~~ 292 (370)
.+++++.-++++. .++.++..
T Consensus 95 ~~~vvsNlPy~i~~----~il~~ll~ 116 (253)
T TIGR00755 95 QLKVVSNLPYNISS----PLIFKLLE 116 (253)
T ss_pred cceEEEcCChhhHH----HHHHHHhc
Confidence 3445555555554 44444443
No 162
>PLN02823 spermine synthase
Probab=98.17 E-value=6.4e-06 Score=76.70 Aligned_cols=97 Identities=15% Similarity=0.073 Sum_probs=72.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCCC--C-CCC-CEEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFEN--V-PRG-DAIF 270 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~~--~-p~~-D~i~ 270 (370)
+.+++||.||+|.|..+..+++..+..+++.+|+ |.+++.+++ .+|++++.+|...- . ++. |+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3568999999999999999998666678999998 999888764 26899999998872 2 223 9999
Q ss_pred ecccccCCC--hhH---HHHHHH-HHHHhCCCCcEEEEE
Q 017495 271 LKWMLHGWT--DEH---CLKLLK-NCWEALPENGKVIIV 303 (370)
Q Consensus 271 ~~~vLh~~~--d~~---~~~iL~-~~~~~L~pgG~lli~ 303 (370)
+-.. ..+. ... ...+++ .+++.|+|||.+++.
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 8621 1110 000 246787 899999999998764
No 163
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.17 E-value=7.7e-06 Score=73.43 Aligned_cols=103 Identities=22% Similarity=0.299 Sum_probs=73.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCC-eEEEeeh-hhHHHhCCCC--------C----CCeEEeccCCCC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCI-KGISFDL-PHVLANAPSF--------P----GVEHVGGDMFEN 262 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~~~~a~~~--------~----rv~~~~~D~~~~ 262 (370)
.++..+ .++...++|+|||-|+=+...-++ ++ .++++|+ ...+++++++ . .+.|+.+|.+..
T Consensus 109 ~LI~~y--~~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~ 184 (389)
T KOG1975|consen 109 VLINLY--TKRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE 184 (389)
T ss_pred HHHHHH--hccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence 344444 346678999999988877655543 33 5789998 4446666642 1 257888887651
Q ss_pred -----C----CCCCEEEecccccC-C-ChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 263 -----V----PRGDAIFLKWMLHG-W-TDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 263 -----~----p~~D~i~~~~vLh~-~-~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
. |..|+|-|.+++|+ | +.+.+.-+|+++.+.|+|||+++-.
T Consensus 185 ~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 185 RLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred HHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 1 22499999999998 4 4456789999999999999999863
No 164
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.16 E-value=9.8e-06 Score=73.69 Aligned_cols=113 Identities=19% Similarity=0.373 Sum_probs=79.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCC-eEEEeeh-hhHHHhCCCC----CCCeE--EeccCCC---C
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCI-KGISFDL-PHVLANAPSF----PGVEH--VGGDMFE---N 262 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~~~~a~~~----~rv~~--~~~D~~~---~ 262 (370)
++.++...+++| .+.+|||+|+|+|..+-+..+.++.. +++.+|. +.+.+.++.. ..... ...++.. +
T Consensus 21 vl~El~~r~p~f-~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 21 VLSELRKRLPDF-RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHHhCcCC-CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc
Confidence 345565555533 56799999999999998888888854 5788897 7777655431 11110 0111111 2
Q ss_pred CCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 263 VPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 263 ~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
.+..|+|+++++|-.+++.....+++++.+.+.+ .|+|+|+-.+.
T Consensus 100 ~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 3334999999999999988788999999888876 99999986654
No 165
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.12 E-value=1.5e-05 Score=72.04 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=61.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCC-CCCCCCE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFE-NVPRGDA 268 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~-~~p~~D~ 268 (370)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++..|.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 445555554 5667899999999999999999973 57888987 777766553 3579999999988 6655587
Q ss_pred EEecccccCCChh
Q 017495 269 IFLKWMLHGWTDE 281 (370)
Q Consensus 269 i~~~~vLh~~~d~ 281 (370)
|++ +.-++.+.+
T Consensus 95 Vv~-NlPy~i~s~ 106 (258)
T PRK14896 95 VVS-NLPYQISSP 106 (258)
T ss_pred EEE-cCCcccCcH
Confidence 766 444555543
No 166
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.11 E-value=1.1e-05 Score=73.54 Aligned_cols=82 Identities=13% Similarity=0.184 Sum_probs=59.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CCCeEEeccCCC-CCCCC--C
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PGVEHVGGDMFE-NVPRG--D 267 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~D~~~-~~p~~--D 267 (370)
...+++.+. ..+..+|||||||+|.++..++++.+ +++++|. +.+++.+++. ++++++.+|+.+ +.+.- |
T Consensus 31 ~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 31 LDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 345555555 66778999999999999999999875 7888887 8888776543 589999999987 44432 4
Q ss_pred EEEecccccCCCh
Q 017495 268 AIFLKWMLHGWTD 280 (370)
Q Consensus 268 ~i~~~~vLh~~~d 280 (370)
.|+ .+.-++.+.
T Consensus 108 ~vv-~NlPY~iss 119 (272)
T PRK00274 108 KVV-ANLPYNITT 119 (272)
T ss_pred eEE-EeCCccchH
Confidence 444 445555543
No 167
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.11 E-value=5.3e-06 Score=80.25 Aligned_cols=126 Identities=22% Similarity=0.241 Sum_probs=77.4
Q ss_pred hhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCC---CCCeEEEEcCcccHHHHHHHhhC----CCCeEEEeeh-h
Q 017495 169 QFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFD---GLKVLVDVGGGIGVTLGMITSRY----PCIKGISFDL-P 240 (370)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~---~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-p 240 (370)
.|+.+++++.....|.+++. ..+.+.....+ +...|+|||||+|-++...+++. ...++++++. |
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~-------~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~ 224 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIE-------EALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP 224 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHH-------HHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred cHhhHhcCHHHHHHHHHHHH-------HHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence 57777888776666666553 23333332111 35789999999999987766653 3578899986 5
Q ss_pred hHHHhC----CC---CCCCeEEeccCCC-CCCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEE
Q 017495 241 HVLANA----PS---FPGVEHVGGDMFE-NVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVI 301 (370)
Q Consensus 241 ~~~~~a----~~---~~rv~~~~~D~~~-~~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~ll 301 (370)
.+.... +. .++|+++.+|+.+ ..|+. |+|++-..=.....+-....|....+.|||||.++
T Consensus 225 ~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 225 NAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 433221 11 2789999999999 66665 99987443222222334466888889999998765
No 168
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.09 E-value=1.6e-05 Score=73.46 Aligned_cols=144 Identities=17% Similarity=0.199 Sum_probs=90.2
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEe----ccCCCC--CCC-C-CEE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVG----GDMFEN--VPR-G-DAI 269 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~----~D~~~~--~p~-~-D~i 269 (370)
...++||||||+|.....++.+.++.+++++|+ +..++.++.. ++|+++. .+++.. .+. . |+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999998888888889999999998 8888877642 3566653 233332 122 2 999
Q ss_pred EecccccCCChhH---HHHHHHHH----------------HHhCCCCcEEEEEeecCCCCCCCCccchhhhhhh-hHHhh
Q 017495 270 FLKWMLHGWTDEH---CLKLLKNC----------------WEALPENGKVIIVESILPLVPENQASSHIVFEQD-LFMLA 329 (370)
Q Consensus 270 ~~~~vLh~~~d~~---~~~iL~~~----------------~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d-~~~~~ 329 (370)
+++==+|.-.++. ...-.+++ .+.+.+||.+-++..+..+. ....-. .++..
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS--------~~~~~~~gwfts 265 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES--------KAFAKQVLWFTS 265 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH--------HHHHhhCcEEEE
Confidence 9977666433221 11222222 23344677766655554432 000000 11111
Q ss_pred hcCCCcccCHHHHHHHHHhCCCCcceEEecC
Q 017495 330 QTTGGRERSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 330 ~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
.-++.-+.+.+.+.|++.|.+.+.+..+.
T Consensus 266 --mv~kk~~l~~l~~~L~~~~~~~~~~~e~~ 294 (321)
T PRK11727 266 --LVSKKENLPPLYRALKKVGAVEVKTIEMA 294 (321)
T ss_pred --EeeccCCHHHHHHHHHHcCCceEEEEEEe
Confidence 12555689999999999999888887764
No 169
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.07 E-value=1.9e-05 Score=71.22 Aligned_cols=103 Identities=21% Similarity=0.264 Sum_probs=71.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCCeEEeccCCC-CCCCC-C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHVGGDMFE-NVPRG-D 267 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~-D 267 (370)
.++.+..+| ..+-|||||||+|-++...+.+ ...++..++...+.+.++.. +||.++.|.+.+ +.|+. |
T Consensus 168 Ail~N~sDF-~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~D 245 (517)
T KOG1500|consen 168 AILENHSDF-QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVD 245 (517)
T ss_pred HHHhccccc-CCcEEEEecCCccHHHHHHHHh-CcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhcc
Confidence 444443323 4578999999999988877664 34578888877777766542 789999999999 88986 9
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEE
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVI 301 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~ll 301 (370)
+|+.--.=+.+-.+-...---.+++.|+|.|+++
T Consensus 246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred EEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 9987433222222322222334669999999876
No 170
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.07 E-value=1e-05 Score=71.77 Aligned_cols=106 Identities=23% Similarity=0.230 Sum_probs=81.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCC-C-CEEE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPR-G-DAIF 270 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~-~-D~i~ 270 (370)
+..++... +....++|+|||.|.++ ..+|.+..++.|+ ...+.-++..+.......|+.. +.++ . |..+
T Consensus 36 v~qfl~~~---~~gsv~~d~gCGngky~----~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~l 108 (293)
T KOG1331|consen 36 VRQFLDSQ---PTGSVGLDVGCGNGKYL----GVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAAL 108 (293)
T ss_pred HHHHHhcc---CCcceeeecccCCcccC----cCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccch
Confidence 34454443 34789999999999765 3458889999998 5666666654444677888887 6654 3 9999
Q ss_pred ecccccCCChhHH-HHHHHHHHHhCCCCcEEEEEeecC
Q 017495 271 LKWMLHGWTDEHC-LKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 271 ~~~vLh~~~d~~~-~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
...++||++.... ..+|+.+.+.++|||..+|.-+..
T Consensus 109 siavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 109 SIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 9999999988764 499999999999999988866544
No 171
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.06 E-value=1.9e-05 Score=68.04 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=64.2
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCC--CC--CCEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENV--PR--GDAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~--p~--~D~i~~~~vL 275 (370)
...+|||+|||+|.++..++.+. ..+++++|. +.+++.++++ .+++++.+|+.+.. .. .|+|++.==.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 45799999999999998766554 368999997 7777765542 46899999987622 22 3999885432
Q ss_pred cCCChhHHHHHHHHHHHh--CCCCcEEEEEee
Q 017495 276 HGWTDEHCLKLLKNCWEA--LPENGKVIIVES 305 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~--L~pgG~lli~e~ 305 (370)
+. .-...+++.+... |+|++.+++...
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 21 1223455555553 789887776543
No 172
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.05 E-value=1.3e-05 Score=71.39 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=73.9
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCC---------CCC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENV---------PRG 266 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~---------p~~ 266 (370)
..++++|||||+++|..+.+++...| +.+++.+|. ++..+.|++. ++|+++.||..+.. ...
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 34678999999999999999998864 678999998 7777666542 68999999987621 123
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|+|++-.- ..+-...+..+.+.|+|||.|++ |.+
T Consensus 157 fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~-DNv 191 (247)
T PLN02589 157 FDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGY-DNT 191 (247)
T ss_pred ccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEE-cCC
Confidence 99988532 34567889999999999998776 443
No 173
>PRK00536 speE spermidine synthase; Provisional
Probab=98.02 E-value=2.6e-05 Score=69.87 Aligned_cols=88 Identities=18% Similarity=0.093 Sum_probs=68.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------CCCeEEeccCCCCCCCC-CEEEecc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----------PGVEHVGGDMFENVPRG-DAIFLKW 273 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~D~~~~~p~~-D~i~~~~ 273 (370)
+.+++||=||||.|..++++++. |. +++.+|+ +.+++.++++ +|++++.. +.+...+. |+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 46799999999999999999985 55 9999999 8899888762 67877752 22222233 9999864
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
. .+ ..+.+.++++|+|||.++..
T Consensus 148 ~----~~---~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 148 E----PD---IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred C----CC---hHHHHHHHHhcCCCcEEEEC
Confidence 3 22 47789999999999999874
No 174
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.02 E-value=1.6e-05 Score=77.54 Aligned_cols=100 Identities=11% Similarity=0.061 Sum_probs=69.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCC-----
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFEN----- 262 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~----- 262 (370)
...++..+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ .+++++.+|+.+.
T Consensus 286 ~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 286 VARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 344444444 4566899999999999999999875 58999998 8888877642 4689999998652
Q ss_pred CCC--CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 263 VPR--GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 263 ~p~--~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
++. .|+|++. -|-.....+++.+.+ ++|++.+++.
T Consensus 363 ~~~~~fD~Vi~d-----PPr~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 363 WALGGFDKVLLD-----PPRAGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred hhcCCCCEEEEC-----cCCcChHHHHHHHHh-cCCCeEEEEE
Confidence 222 2998763 222223355655555 6888887774
No 175
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.99 E-value=0.00013 Score=64.20 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=82.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHH-hCCCCCCCe-EEeccCCC-C---C-CC-
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLA-NAPSFPGVE-HVGGDMFE-N---V-PR- 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~-~a~~~~rv~-~~~~D~~~-~---~-p~- 265 (370)
+..++..+.......++||+|||+|.++..+++. +..+++++|. +.++. ..++++++. +...|+.. . . ++
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 4455555541235679999999999999999986 4467999998 64444 455555543 33334332 1 1 11
Q ss_pred --CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEE-EEeecCCCCCCCCccchhhhhhhhHHhhhcCCCccc-----
Q 017495 266 --GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVI-IVESILPLVPENQASSHIVFEQDLFMLAQTTGGRER----- 337 (370)
Q Consensus 266 --~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~ll-i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----- 337 (370)
.|+.+++.. .+|..+.++|+| |.++ ++.+-..-.+. .. ..+|-.+
T Consensus 142 ~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~--------------~~--~~~giv~~~~~~ 194 (228)
T TIGR00478 142 ATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGRE--------------KK--NKKGVVRDKEAI 194 (228)
T ss_pred eeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHh--------------hc--CcCCeecCHHHH
Confidence 266665433 357889999999 5554 33322111100 00 0122222
Q ss_pred --CHHHHHHHHHhCCCCcceEEecC
Q 017495 338 --SKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 338 --t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
..+.+...+.+.||++..+.+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 195 ALALHKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHHHHHHHcCCCeEeeEEECC
Confidence 34567778888999998888764
No 176
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.99 E-value=3.6e-05 Score=71.05 Aligned_cols=105 Identities=15% Similarity=0.226 Sum_probs=76.8
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC----CCeEEEeeh-hhHHHhCC------CCCCCeE--EeccCCCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP----CIKGISFDL-PHVLANAP------SFPGVEH--VGGDMFEN 262 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p----~~~~~~~D~-p~~~~~a~------~~~rv~~--~~~D~~~~ 262 (370)
..++..++ +...|+|+|||+|.=+..|++.+. ..+++.+|+ .+.++.+. ..+.+.+ +++|+.+.
T Consensus 68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 34555443 556899999999998887777663 467899997 45555432 2245555 88888652
Q ss_pred ---CC-----C-C-CEEEecccccCCChhHHHHHHHHHHH-hCCCCcEEEEE
Q 017495 263 ---VP-----R-G-DAIFLKWMLHGWTDEHCLKLLKNCWE-ALPENGKVIIV 303 (370)
Q Consensus 263 ---~p-----~-~-D~i~~~~vLh~~~d~~~~~iL~~~~~-~L~pgG~lli~ 303 (370)
.+ . . -++++.+.+.+++++++..+|+++++ .|+||+.|+|.
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 21 1 2 44466789999999999999999999 99999998883
No 177
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.98 E-value=3.1e-05 Score=70.99 Aligned_cols=89 Identities=19% Similarity=0.287 Sum_probs=65.3
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCC-CCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFE-NVPR 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~-~~p~ 265 (370)
...+++... ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 25 ~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 25 LDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 445666555 6677899999999999999999864 46888887 777765543 3579999999987 5554
Q ss_pred CCEEEecccccCCChhHHHHHH
Q 017495 266 GDAIFLKWMLHGWTDEHCLKLL 287 (370)
Q Consensus 266 ~D~i~~~~vLh~~~d~~~~~iL 287 (370)
.|+|+ .+.-++++.+....+|
T Consensus 102 ~d~Vv-aNlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCV-ANVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEE-ecCCcccCcHHHHHHH
Confidence 48766 4666777766555555
No 178
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.95 E-value=2.5e-05 Score=80.35 Aligned_cols=96 Identities=14% Similarity=0.098 Sum_probs=70.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCCC---CCCC-CEEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFEN---VPRG-DAIFLKW 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~~---~p~~-D~i~~~~ 273 (370)
+..+|||+|||+|.++..++.. ...+++.+|. +.+++.++++ ++++++.+|+++. .... |+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4689999999999999999985 3347999998 8888877652 3789999998762 2233 9999831
Q ss_pred --ccc-----C-C-ChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 274 --MLH-----G-W-TDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 274 --vLh-----~-~-~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
.-. . + ....-..+++.+.+.|+|||.|++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 000 0 0 0123457889999999999988774
No 179
>PRK04148 hypothetical protein; Provisional
Probab=97.90 E-value=0.00016 Score=57.72 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=67.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccH-HHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCCC----CCEEE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGV-TLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVPR----GDAIF 270 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p~----~D~i~ 270 (370)
.+.+.++ -.+..+|||||||+|. ++..|.+ -+..++++|. |..++.+++. .++++.+|++++-++ +|+|.
T Consensus 7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~--~G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKE--SGFDVIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHHhcc-cccCCEEEEEEecCCHHHHHHHHH--CCCEEEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHhcCCEEE
Confidence 3445554 3345799999999996 7777776 3678999998 8877777653 589999999985442 39998
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
..+ ++++...-+.++.+.. |.-++|....
T Consensus 83 sir-----pp~el~~~~~~la~~~--~~~~~i~~l~ 111 (134)
T PRK04148 83 SIR-----PPRDLQPFILELAKKI--NVPLIIKPLS 111 (134)
T ss_pred EeC-----CCHHHHHHHHHHHHHc--CCCEEEEcCC
Confidence 764 3455555555565554 3456654443
No 180
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.90 E-value=1.2e-05 Score=71.96 Aligned_cols=99 Identities=19% Similarity=0.263 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------CCCeEEeccCCC---CCCC-C-CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----------PGVEHVGGDMFE---NVPR-G-DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~D~~~---~~p~-~-D~i 269 (370)
+.+.+||=||+|.|..+..+++..+-.+++.+|+ |.+++.+++. +|++++.+|... ...+ . |+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4689999999999999999987665678999999 9998887652 589999999876 3444 4 999
Q ss_pred EecccccCCChhH--HHHHHHHHHHhCCCCcEEEEEe
Q 017495 270 FLKWMLHGWTDEH--CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 270 ~~~~vLh~~~d~~--~~~iL~~~~~~L~pgG~lli~e 304 (370)
++-..=-..+... ...+++.+++.|+|||.+++.-
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8743321111111 2589999999999999999865
No 181
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.88 E-value=9.3e-06 Score=77.54 Aligned_cols=98 Identities=21% Similarity=0.258 Sum_probs=67.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEe---eh-hhHHHhCCCCCCCeEEeccCCC---CCCCC--CEEEecccccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISF---DL-PHVLANAPSFPGVEHVGGDMFE---NVPRG--DAIFLKWMLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---D~-p~~~~~a~~~~rv~~~~~D~~~---~~p~~--D~i~~~~vLh~ 277 (370)
..+.+||||||+|.++..|+++. +..+-+ |. +..+..+.++ .|-.+.+-+.+ |+|.. |+|.|+.++..
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleR-Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALER-GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhc-CcchhhhhhccccccCCccchhhhhccccccc
Confidence 45789999999999999999853 322211 22 2233333322 23333333322 77765 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
|...+ ..+|-.+-++|+|||++++.-+-..
T Consensus 194 W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred chhcc-cceeehhhhhhccCceEEecCCccc
Confidence 98765 4689999999999999999776544
No 182
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.83 E-value=6.1e-05 Score=72.00 Aligned_cols=97 Identities=15% Similarity=0.040 Sum_probs=68.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCCCC------CC-CCEEE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFENV------PR-GDAIF 270 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~~~------p~-~D~i~ 270 (370)
+..+|||+|||+|.++...+.. ...+++.+|. +.+++.++++ ++++++.+|+++.. .. .|+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5689999999999998876643 3458999998 8888776642 26889999998721 12 39999
Q ss_pred ecccccCCCh-------hHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 271 LKWMLHGWTD-------EHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 271 ~~~vLh~~~d-------~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
+.---..-+. ..-..+++.+.+.|+|||.|+...
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 8521100011 123456677899999999999755
No 183
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.82 E-value=6.6e-05 Score=69.86 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=60.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CC-C-C-CCEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NV-P-R-GDAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~-p-~-~D~i~~~~vL 275 (370)
++.+|||+|||+|.++..+++ +..+++++|. +.+++.+++. .+++++.+|+.+ .. . . .|+|++.-
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dP-- 248 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNP-- 248 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECC--
Confidence 357999999999999999998 4568999998 8888877642 468999999976 21 1 2 39988752
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEE
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli 302 (370)
|.......+.+....++|++.+++
T Consensus 249 ---Pr~G~~~~~~~~l~~~~~~~ivyv 272 (315)
T PRK03522 249 ---PRRGIGKELCDYLSQMAPRFILYS 272 (315)
T ss_pred ---CCCCccHHHHHHHHHcCCCeEEEE
Confidence 111111222233344677765555
No 184
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.82 E-value=3.1e-05 Score=76.49 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=68.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHh-CCC-----CCCCeEEeccCCC---CCCCC--CEEEeccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLAN-APS-----FPGVEHVGGDMFE---NVPRG--DAIFLKWM 274 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~-a~~-----~~rv~~~~~D~~~---~~p~~--D~i~~~~v 274 (370)
....+||||||.|.++..++..+|+..++++|. ...+.. .+. ..++.++.+|+.. .+|.+ |-|++.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~-- 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL-- 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE--
Confidence 356899999999999999999999999999996 333332 221 2567788877642 34543 766653
Q ss_pred ccCCChhH-----------HHHHHHHHHHhCCCCcEEEEEe
Q 017495 275 LHGWTDEH-----------CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 275 Lh~~~d~~-----------~~~iL~~~~~~L~pgG~lli~e 304 (370)
+||+. ...+|+.+++.|+|||.|.+..
T Consensus 425 ---FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 425 ---FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred ---CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 23332 1489999999999999999854
No 185
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.79 E-value=0.00022 Score=62.89 Aligned_cols=99 Identities=14% Similarity=0.116 Sum_probs=68.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC----CCC--CC--CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE----NVP--RG--DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~----~~p--~~--D~i 269 (370)
..+..|||+|||+|..+..++...|...++++|. +.++..+.++ +++.++..++.. +.+ .+ |++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 3456899999999999999999999999999998 7777666543 678777555443 222 23 777
Q ss_pred Eec--ccccCC--------------------C--hhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 270 FLK--WMLHGW--------------------T--DEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 270 ~~~--~vLh~~--------------------~--d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
+++ +|.+.= . -+....++.-+.+.|+|||.+.+.-
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 763 333220 0 0112356677789999999887743
No 186
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.0006 Score=56.52 Aligned_cols=133 Identities=17% Similarity=0.231 Sum_probs=82.9
Q ss_pred CCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCC-----CCCCeEEeccCCCCC-CCC-CEEEecccccCC
Q 017495 208 LKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPS-----FPGVEHVGGDMFENV-PRG-DAIFLKWMLHGW 278 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~D~~~~~-p~~-D~i~~~~vLh~~ 278 (370)
+.-++|||||+|..+..|.+.. |+..+...|+ |..++...+ .-++..+..|+.+.. ++. |+++++--.---
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 6789999999999999988874 7778888998 888776443 134678888888732 233 887764321111
Q ss_pred ChhH-------------------HHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCH
Q 017495 279 TDEH-------------------CLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSK 339 (370)
Q Consensus 279 ~d~~-------------------~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~ 339 (370)
++++ ..++|..+-..|.|.|.++++-... -.+
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~-----------------------------N~p 174 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA-----------------------------NKP 174 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh-----------------------------cCH
Confidence 1111 1244555555556666666543221 125
Q ss_pred HHHHHHHHhCCCCcceEEe--cC-CCeeEEEEe
Q 017495 340 KEYEALAKNSGFSGLEIVC--CA-YNSWVMEFH 369 (370)
Q Consensus 340 ~e~~~ll~~aGf~~v~~~~--~~-~~~~~~e~~ 369 (370)
+++-.+++.-||....... .+ ...+++.++
T Consensus 175 ~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~ 207 (209)
T KOG3191|consen 175 KEILKILEKKGYGVRIAMQRKAGGETLSILKFT 207 (209)
T ss_pred HHHHHHHhhcccceeEEEEEecCCceEEEEEEE
Confidence 6777788899987765433 22 344555544
No 187
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.77 E-value=0.0002 Score=61.47 Aligned_cols=142 Identities=19% Similarity=0.167 Sum_probs=92.2
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--CC--CeEEeccCCC-CCCCC--CEEEecccccCC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--PG--VEHVGGDMFE-NVPRG--DAIFLKWMLHGW 278 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~r--v~~~~~D~~~-~~p~~--D~i~~~~vLh~~ 278 (370)
.+..++|||||-|....++..+. --+.+..|. -.+++.++.. +. +....+|-.. ++.+. |+|+.+..+|..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 45689999999999999998864 336788897 7788777653 33 3455666444 55554 999999999854
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCccc------CHHHHHHHHHhCCCC
Q 017495 279 TDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRER------SKKEYEALAKNSGFS 352 (370)
Q Consensus 279 ~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------t~~e~~~ll~~aGf~ 352 (370)
. +...-+.+|+.+|||+|.++-.=. ..+ ..+ .......+-.+-. .||-.. ...++-.+|..|||+
T Consensus 151 N--dLPg~m~~ck~~lKPDg~Fiasml-ggd----TLy-ELR~slqLAelER-~GGiSphiSPf~qvrDiG~LL~rAGF~ 221 (325)
T KOG2940|consen 151 N--DLPGSMIQCKLALKPDGLFIASML-GGD----TLY-ELRCSLQLAELER-EGGISPHISPFTQVRDIGNLLTRAGFS 221 (325)
T ss_pred c--cCchHHHHHHHhcCCCccchhHHh-ccc----cHH-HHHHHhhHHHHHh-ccCCCCCcChhhhhhhhhhHHhhcCcc
Confidence 3 456778899999999998775322 111 111 1111122222211 122211 346788999999999
Q ss_pred cceEEe
Q 017495 353 GLEIVC 358 (370)
Q Consensus 353 ~v~~~~ 358 (370)
...+..
T Consensus 222 m~tvDt 227 (325)
T KOG2940|consen 222 MLTVDT 227 (325)
T ss_pred cceecc
Confidence 876543
No 188
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00029 Score=60.26 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=79.6
Q ss_pred hchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeehhhHHHhCCCCCCCeEEeccCCCC-----
Q 017495 189 NHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDLPHVLANAPSFPGVEHVGGDMFEN----- 262 (370)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~----- 262 (370)
+.+.+-+.++.+.+.-+++..+|+|+|+..|.++..+.+... +.+++++|+.++- ....|.++.+|+..+
T Consensus 27 SRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----~~~~V~~iq~d~~~~~~~~~ 102 (205)
T COG0293 27 SRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----PIPGVIFLQGDITDEDTLEK 102 (205)
T ss_pred chHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----cCCCceEEeeeccCccHHHH
Confidence 334444567777765467889999999999999998888754 4568999974332 224599999999873
Q ss_pred ----CCC-C-CEEEecc---cc-----cC-CChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 263 ----VPR-G-DAIFLKW---ML-----HG-WTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 263 ----~p~-~-D~i~~~~---vL-----h~-~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.+. . |+|++-. +- +| ..-.-+..++.-+...|+|||.+++-.+-.
T Consensus 103 l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 103 LLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred HHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 122 2 8887522 21 22 122235678888899999999999866543
No 189
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.74 E-value=4.5e-05 Score=69.77 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=68.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCCeEEeccCCC-CCC-CC-CEEEeccccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHVGGDMFE-NVP-RG-DAIFLKWMLH 276 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv~~~~~D~~~-~~p-~~-D~i~~~~vLh 276 (370)
..+.|||||||+|-++..-+++. -.+++++|...+.+.+++. +.|+++.+.+.+ ..| +. |+|++-+.=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 56899999999999999888875 5688999977776665541 458999999988 677 44 9998866544
Q ss_pred CCC-hhHHHHHHHHHHHhCCCCcEEE
Q 017495 277 GWT-DEHCLKLLKNCWEALPENGKVI 301 (370)
Q Consensus 277 ~~~-d~~~~~iL~~~~~~L~pgG~ll 301 (370)
.+- +.-...+|-.=-+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 432 2223345555557899999876
No 190
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.73 E-value=9.9e-05 Score=71.87 Aligned_cols=97 Identities=18% Similarity=0.268 Sum_probs=66.6
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCC-----CC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFEN-----VP 264 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~-----~p 264 (370)
.+...+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ .+++++.+|+.+. ..
T Consensus 283 ~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 283 RALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred HHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhc
Confidence 3444443 5566899999999999999999864 47899998 8888877652 5789999998652 11
Q ss_pred -CC-CEEEecccccCCChhH-HHHHHHHHHHhCCCCcEEEE
Q 017495 265 -RG-DAIFLKWMLHGWTDEH-CLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 265 -~~-D~i~~~~vLh~~~d~~-~~~iL~~~~~~L~pgG~lli 302 (370)
.. |+|++.- |... ...+|+.+.+ ++|++.+++
T Consensus 360 ~~~~D~vi~dP-----Pr~G~~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 360 GQIPDVLLLDP-----PRKGCAAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred CCCCCEEEECc-----CCCCCCHHHHHHHHh-cCCCEEEEE
Confidence 22 8888621 1111 1355665554 789887666
No 191
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=5.5e-05 Score=64.02 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=67.9
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC--CCCeEEEeeh-hhHHHhCCCC----------------CCCeEEeccCCCCCCC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY--PCIKGISFDL-PHVLANAPSF----------------PGVEHVGGDMFENVPR 265 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~----------------~rv~~~~~D~~~~~p~ 265 (370)
+.+..++||||+|+|.++..+.... ++...+++|. |++++..+++ .++.++.||...-.++
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 5578899999999999998877553 3344478887 8888866532 4688899999884443
Q ss_pred -C--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 266 -G--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 266 -~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
+ |.|.+... +.++.+++..-|+|||+++|.
T Consensus 160 ~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 160 QAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cCCcceEEEccC--------ccccHHHHHHhhccCCeEEEe
Confidence 2 99988633 235667888899999999984
No 192
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00036 Score=62.13 Aligned_cols=95 Identities=18% Similarity=0.325 Sum_probs=66.3
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh--hhHHHhC-CCCCCCeEEeccCCC-CCCC--CC
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL--PHVLANA-PSFPGVEHVGGDMFE-NVPR--GD 267 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--p~~~~~a-~~~~rv~~~~~D~~~-~~p~--~D 267 (370)
....+++... ..+..+|+|||+|.|.++..|+++...+.++-+|. ...+... ...++++++.+|+.+ +++. .-
T Consensus 18 v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~ 96 (259)
T COG0030 18 VIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQP 96 (259)
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCC
Confidence 3556777665 55678999999999999999999877766666662 2333222 235789999999999 7775 33
Q ss_pred EEEecccccCCChhHHHHHHHH
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKN 289 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~ 289 (370)
..+.++.-|+.+.+-...+|..
T Consensus 97 ~~vVaNlPY~Isspii~kll~~ 118 (259)
T COG0030 97 YKVVANLPYNISSPILFKLLEE 118 (259)
T ss_pred CEEEEcCCCcccHHHHHHHHhc
Confidence 3455677777777644444443
No 193
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00012 Score=61.29 Aligned_cols=65 Identities=22% Similarity=0.239 Sum_probs=50.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCCCCEEEec
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPRGDAIFLK 272 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~~D~i~~~ 272 (370)
...+|+|+|||||.+++..+-.. -.+++++|+ |+.++.++++ .+|+|++.|+.+.....|.++++
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimN 115 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMN 115 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEEC
Confidence 56789999999999998776643 357889998 9888888764 57999999987644444777664
No 194
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.60 E-value=0.00086 Score=57.89 Aligned_cols=129 Identities=20% Similarity=0.200 Sum_probs=89.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCC---CCCCC--CEEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFE---NVPRG--DAIF 270 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~---~~p~~--D~i~ 270 (370)
.++..+|||...|-|..++.-+++. -.+++.+.. |.+++.+.-+ .+|+++.||..+ .+++. |+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 3467899999999999999888853 337777776 8898887654 358999999887 45543 8775
Q ss_pred ecccccCCC------hhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 271 LKWMLHGWT------DEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 271 ~~~vLh~~~------d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
|+-| .--...+-+++++.|+|||+++=..-..... . .|.. -+....+
T Consensus 211 -----HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r---------y------------rG~d-~~~gVa~ 263 (287)
T COG2521 211 -----HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR---------Y------------RGLD-LPKGVAE 263 (287)
T ss_pred -----eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---------c------------ccCC-hhHHHHH
Confidence 3311 1113578999999999999997543222110 1 1111 2456888
Q ss_pred HHHhCCCCcceEEecCC
Q 017495 345 LAKNSGFSGLEIVCCAY 361 (370)
Q Consensus 345 ll~~aGf~~v~~~~~~~ 361 (370)
.|+++||.+++......
T Consensus 264 RLr~vGF~~v~~~~~~~ 280 (287)
T COG2521 264 RLRRVGFEVVKKVREAL 280 (287)
T ss_pred HHHhcCceeeeeehhcc
Confidence 99999999888766543
No 195
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.56 E-value=0.00028 Score=60.49 Aligned_cols=94 Identities=17% Similarity=0.070 Sum_probs=60.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---C--C-CC-CEEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---V--P-RG-DAIFL 271 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~--p-~~-D~i~~ 271 (370)
...+|||++||+|.++..++.+.. .+++.+|. +.+++.++++ ++++++.+|.++. . . .. |+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 357999999999999999999865 37888997 7776655432 4688999998651 1 1 22 77776
Q ss_pred cccccCCChhHHHHHHHHHH--HhCCCCcEEEEEee
Q 017495 272 KWMLHGWTDEHCLKLLKNCW--EALPENGKVIIVES 305 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~--~~L~pgG~lli~e~ 305 (370)
.=-... .....++..+. ..|+++|.+++ |.
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~-E~ 159 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILEDTVLIVV-EE 159 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCCCeEEEE-Ee
Confidence 322211 11233444443 35777775554 44
No 196
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.56 E-value=0.00022 Score=60.71 Aligned_cols=107 Identities=19% Similarity=0.213 Sum_probs=65.0
Q ss_pred HHHHHHhhcCCC--CCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeehhhHHHhCCCCCCCeEEeccCCCC---------
Q 017495 195 MNKILDVYRGFD--GLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDLPHVLANAPSFPGVEHVGGDMFEN--------- 262 (370)
Q Consensus 195 ~~~l~~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~--------- 262 (370)
+.++.+.++-++ ...++||+||++|+++..++++. +..+++++|+.... ....+.+..+|+.++
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----PLQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----S-TTEEBTTGGGEEEEHSHHGGGS
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc----cccceeeeecccchhhHHHhhhhh
Confidence 456666665233 45899999999999999999987 67889999984331 113445555665431
Q ss_pred CC---CC-CEEEecccccCC---------ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 263 VP---RG-DAIFLKWMLHGW---------TDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 263 ~p---~~-D~i~~~~vLh~~---------~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.+ .. |+|++-.....- .-+-+...|.-+...|+|||.+++--.
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 11 23 888875521111 112234556666778999999887444
No 197
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=6.9e-05 Score=68.10 Aligned_cols=112 Identities=21% Similarity=0.345 Sum_probs=71.8
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCe-EEEeeh-hhH---HHhCCCC---CCCeEEeccCCC---CCCC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIK-GISFDL-PHV---LANAPSF---PGVEHVGGDMFE---NVPR 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~---~~~a~~~---~rv~~~~~D~~~---~~p~ 265 (370)
.+....+++ .+++|||||.|.|.-+.++-.-+|+++ ++++.. |.+ +....++ ........|+.. ++|.
T Consensus 104 ~L~~~~~df-apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ 182 (484)
T COG5459 104 ELQKRVPDF-APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA 182 (484)
T ss_pred HHHHhCCCc-CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc
Confidence 333333434 356799999999999988888899985 555564 322 2211111 122233334333 5666
Q ss_pred CCEEEecccccCCChhH----HHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 266 GDAIFLKWMLHGWTDEH----CLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 266 ~D~i~~~~vLh~~~d~~----~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
+|.|.+..++|.+-++. ....++++.+.+.|||.|+|+|.-.+.
T Consensus 183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 68777776666543333 334899999999999999999986554
No 198
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.55 E-value=0.00042 Score=59.98 Aligned_cols=111 Identities=22% Similarity=0.226 Sum_probs=79.0
Q ss_pred EEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCCCCCC---CCEEEecccccCCC
Q 017495 211 LVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFENVPR---GDAIFLKWMLHGWT 279 (370)
Q Consensus 211 vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~~~p~---~D~i~~~~vLh~~~ 279 (370)
|.||||-+|.+...|+++...-+++..|+ +.-++.+++ .++|+++.+|-++..+. .|+|+++.+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999988778999998 777776654 26899999998885443 378877654 3
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceE
Q 017495 280 DEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEI 356 (370)
Q Consensus 280 d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~ 356 (370)
-.-..+||.+....++....|++. +. .....+++||.+.||.+++=
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILq-P~------------------------------~~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQ-PN------------------------------THAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEE-ES------------------------------S-HHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHhhHHHhccCCeEEEe-CC------------------------------CChHHHHHHHHHCCCEEEEe
Confidence 456778888888877765566651 11 12567899999999998863
No 199
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.54 E-value=0.0009 Score=56.07 Aligned_cols=137 Identities=15% Similarity=0.128 Sum_probs=83.2
Q ss_pred CCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeehhhHHHhC-----------CC--CCCCeEEeccCCC-CCCCC-C
Q 017495 204 GFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDLPHVLANA-----------PS--FPGVEHVGGDMFE-NVPRG-D 267 (370)
Q Consensus 204 ~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~p~~~~~a-----------~~--~~rv~~~~~D~~~-~~p~~-D 267 (370)
++++..+|+|+=.|.|.++.-|.... |.-.++.+-..+....+ ++ +.+++.+..+... ..|+. |
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 37889999999999999999887753 33334333212221111 11 1345555555544 33343 6
Q ss_pred EEEecccccC-----CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHH
Q 017495 268 AIFLKWMLHG-----WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEY 342 (370)
Q Consensus 268 ~i~~~~vLh~-----~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~ 342 (370)
+++....-|+ +....+.++-+.++++|||||.+++.|+......... +-. .-..++....
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~---------dt~------~~~ri~~a~V 189 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS---------DTI------TLHRIDPAVV 189 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh---------hhh------hhcccChHHH
Confidence 6655333222 2344567999999999999999999998765432211 000 0112356677
Q ss_pred HHHHHhCCCCcce
Q 017495 343 EALAKNSGFSGLE 355 (370)
Q Consensus 343 ~~ll~~aGf~~v~ 355 (370)
.+..+.+||+..-
T Consensus 190 ~a~veaaGFkl~a 202 (238)
T COG4798 190 IAEVEAAGFKLEA 202 (238)
T ss_pred HHHHHhhcceeee
Confidence 8888999998764
No 200
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.49 E-value=0.00026 Score=67.46 Aligned_cols=90 Identities=10% Similarity=-0.003 Sum_probs=61.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC---C-CCEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP---R-GDAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p---~-~D~i~~~~vL 275 (370)
+..+|||++||+|.++..++. +..+++++|. +..++.++++ ++++++.+|+.+..+ . .|+|++.===
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~--~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAG--PDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhh--cCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 347999999999999999986 3468999998 8888766642 468999999865211 2 3988874110
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
-.. ...+++.+. .++|++.+++.
T Consensus 311 ~G~----~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 311 RGI----GKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCC----cHHHHHHHH-hcCCCeEEEEE
Confidence 011 124455554 47888877764
No 201
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.47 E-value=0.00016 Score=61.49 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=66.9
Q ss_pred eEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhH---HHhCC---CCCCCeEEeccCCC-CCCCC-CEEEecccccCCCh
Q 017495 210 VLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHV---LANAP---SFPGVEHVGGDMFE-NVPRG-DAIFLKWMLHGWTD 280 (370)
Q Consensus 210 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~---~~~a~---~~~rv~~~~~D~~~-~~p~~-D~i~~~~vLh~~~d 280 (370)
+++|||+|.|.-+.-|+-.+|+.+++.+|. ..- ++.+. ...+++++.+.+.+ ..+.. |+|+++.+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999994 322 22221 12578999888877 33344 9999987742
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 281 EHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 281 ~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
...++.-+...++|||++++.-
T Consensus 127 --l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEEEEEEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEc
Confidence 3578899999999999999864
No 202
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.45 E-value=0.003 Score=56.77 Aligned_cols=134 Identities=15% Similarity=0.129 Sum_probs=86.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh--hh------HHHhCCC------------------------------
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL--PH------VLANAPS------------------------------ 248 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--p~------~~~~a~~------------------------------ 248 (370)
...+||-=|||.|.++..++... ..+.+.+. -. ++....+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 46799999999999999999973 34444442 11 1111000
Q ss_pred ---------CCCCeEEeccCCC--CCC---CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCC
Q 017495 249 ---------FPGVEHVGGDMFE--NVP---RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPEN 313 (370)
Q Consensus 249 ---------~~rv~~~~~D~~~--~~p---~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~ 313 (370)
..++....|||.+ ..+ .. |+|+..+.+-- -+++.+.|+.|.++|||||.-+=.-+..-.-
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~--- 208 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPLLYHF--- 208 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCccccC---
Confidence 0257788999988 222 12 99988877753 4578899999999999999544333332211
Q ss_pred CccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEe
Q 017495 314 QASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 314 ~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~ 358 (370)
-+.. ......-+.+.+|+.++.+..||++++-..
T Consensus 209 ---------~~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 ---------EPMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ---------CCCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0000 000112456899999999999999986544
No 203
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.44 E-value=0.00037 Score=61.45 Aligned_cols=75 Identities=20% Similarity=0.355 Sum_probs=56.9
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----C---CCCeEEeccCCC-CCC
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----F---PGVEHVGGDMFE-NVP 264 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~---~rv~~~~~D~~~-~~p 264 (370)
+...++..-+ .++...|||||.|||.++..|++.. .+++.++. |.++....+ . .+.++..||++. +.|
T Consensus 46 v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 46 VIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 4566776666 7788999999999999999999964 46666665 555554332 1 568999999998 777
Q ss_pred CCCEEEe
Q 017495 265 RGDAIFL 271 (370)
Q Consensus 265 ~~D~i~~ 271 (370)
..|+++.
T Consensus 123 ~fd~cVs 129 (315)
T KOG0820|consen 123 RFDGCVS 129 (315)
T ss_pred ccceeec
Confidence 7777765
No 204
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.0014 Score=56.96 Aligned_cols=99 Identities=23% Similarity=0.392 Sum_probs=76.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCC----CeEEEeeh-hhHHHhC-----CCCCC--CeEEeccCCC---CCCCC---CE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPC----IKGISFDL-PHVLANA-----PSFPG--VEHVGGDMFE---NVPRG---DA 268 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~D~-p~~~~~a-----~~~~r--v~~~~~D~~~---~~p~~---D~ 268 (370)
+...++|+|+|+..=+..|...+.. ++++-+|. ..++... ++++. |.-+++|+.. ..|.. =.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 4789999999999988888888765 68888897 5555432 23444 5567788765 23332 56
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+++...|-++++++|..+|.+++.+|.||-++++--.
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 6778999999999999999999999999999988433
No 205
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.40 E-value=0.00033 Score=63.99 Aligned_cols=66 Identities=21% Similarity=0.187 Sum_probs=54.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC----CCCeEEeccCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF----PGVEHVGGDMFE 261 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~ 261 (370)
+.+++..+. ..+...++|.+||.|..+..+++.+| +.+++++|. |.+++.+++. ++++++.+|+.+
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 456777665 55667999999999999999999986 789999998 9998877643 478888888765
No 206
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.24 E-value=0.0032 Score=56.77 Aligned_cols=147 Identities=16% Similarity=0.080 Sum_probs=95.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC---------CCCCeEEeccCCCCC----------CCC-
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS---------FPGVEHVGGDMFENV----------PRG- 266 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~---------~~rv~~~~~D~~~~~----------p~~- 266 (370)
+...|+.+|||-=.....+.. .++++++-+|+|++++..++ ..+++++..|+...+ |..
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CCcEEEEeCCccccHHHhcCC-CCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 456899999998888777743 23688899999998875432 257889999986321 112
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhh-cCCCcccCHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQ-TTGGRERSKKEYEAL 345 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~t~~e~~~l 345 (370)
-++++-.++.+++.+++.++|+.+.+...||+.|++ |.+.+-.. .................. .+--...+.+++.++
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRPLDG-EWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEW 237 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-Eeccccch-hHHHHHHHHHHHhhhcccccccccCCChhhHHHH
Confidence 577888899999999999999999999989887775 54443111 000000000000000000 000011367999999
Q ss_pred HHhCCCCcceE
Q 017495 346 AKNSGFSGLEI 356 (370)
Q Consensus 346 l~~aGf~~v~~ 356 (370)
|.+.||+....
T Consensus 238 l~~~Gw~~~~~ 248 (260)
T TIGR00027 238 LAERGWRASEH 248 (260)
T ss_pred HHHCCCeeecC
Confidence 99999998765
No 207
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.21 E-value=0.0011 Score=57.55 Aligned_cols=120 Identities=19% Similarity=0.208 Sum_probs=85.0
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhH---HHhCCC---CCCCeEEeccCCC-C-CCC-CCEEEecccccC
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHV---LANAPS---FPGVEHVGGDMFE-N-VPR-GDAIFLKWMLHG 277 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~---~~~a~~---~~rv~~~~~D~~~-~-~p~-~D~i~~~~vLh~ 277 (370)
+.+++|||+|.|.-+.-++-.+|+.+++.+|. ..- ++.+.. .++++++.+.+.+ . .+. .|+|+++.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 68999999999999999998899999999994 322 222221 2679999998887 2 234 6999987764
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~ 357 (370)
....++.-+...+++||.++..-... ++. -..+.+.....-|+.+..+.
T Consensus 146 ----~L~~l~e~~~pllk~~g~~~~~k~~~--------------------------~~~-e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 146 ----SLNVLLELCLPLLKVGGGFLAYKGLA--------------------------GKD-ELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred ----chHHHHHHHHHhcccCCcchhhhHHh--------------------------hhh-hHHHHHHHHHhhcCcEEEEE
Confidence 23567888899999999877522211 100 13456667777788888877
Q ss_pred ecC
Q 017495 358 CCA 360 (370)
Q Consensus 358 ~~~ 360 (370)
...
T Consensus 195 ~~~ 197 (215)
T COG0357 195 SLT 197 (215)
T ss_pred Eee
Confidence 653
No 208
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.18 E-value=0.0033 Score=58.00 Aligned_cols=95 Identities=19% Similarity=0.113 Sum_probs=70.2
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCCCeEEeccCCCCCC-C-C-CEEEecccccCCChhH
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFENVP-R-G-DAIFLKWMLHGWTDEH 282 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~~p-~-~-D~i~~~~vLh~~~d~~ 282 (370)
.+..++|||||++|+++..++++ +.+++++|...+.......++|.+...|.+...| . . |.+++-.+-+ +
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~----P- 282 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK----P- 282 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC----H-
Confidence 46789999999999999999996 4599999975555555667899999999988444 3 3 9998877643 2
Q ss_pred HHHHHHHHHHhCCCC-cEEEEEeecCC
Q 017495 283 CLKLLKNCWEALPEN-GKVIIVESILP 308 (370)
Q Consensus 283 ~~~iL~~~~~~L~pg-G~lli~e~~~~ 308 (370)
..+++-+.+.|..| -+-.|...-.+
T Consensus 283 -~rva~lm~~Wl~~g~cr~aIfnLKlp 308 (357)
T PRK11760 283 -ARVAELMAQWLVNGWCREAIFNLKLP 308 (357)
T ss_pred -HHHHHHHHHHHhcCcccEEEEEEEcC
Confidence 36677777888776 33444444443
No 209
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.00016 Score=58.60 Aligned_cols=97 Identities=19% Similarity=0.189 Sum_probs=67.0
Q ss_pred CCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC---------CCCCeEEeccCCCCC--C-CC--CEEEe
Q 017495 208 LKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPS---------FPGVEHVGGDMFENV--P-RG--DAIFL 271 (370)
Q Consensus 208 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---------~~rv~~~~~D~~~~~--p-~~--D~i~~ 271 (370)
..+||++|+| +|..+.-++...|...+.+.|= ...++..++ .+++.+...+....+ . +. |+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 4789999999 5666666777778888888884 444443322 134444444444321 1 22 99999
Q ss_pred cccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 272 KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+.++.. ++....+.+.|...|+|.|+-++.-+.
T Consensus 110 ADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsPR 142 (201)
T KOG3201|consen 110 ADCLFF--DEHHESLVDTIKSLLRPSGRALLFSPR 142 (201)
T ss_pred ccchhH--HHHHHHHHHHHHHHhCcccceeEecCc
Confidence 998864 677789999999999999997775543
No 210
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.15 E-value=0.0013 Score=59.45 Aligned_cols=96 Identities=18% Similarity=0.294 Sum_probs=66.0
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC----CCCCCeEEeccCCC-CCCC--
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP----SFPGVEHVGGDMFE-NVPR-- 265 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~----~~~rv~~~~~D~~~-~~p~-- 265 (370)
..+.+++.+. ..+...|+|||+|.|.++..|++.. .++++++. +..++..+ ..++++++.+|+.+ +.+.
T Consensus 18 ~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 18 IADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh
Confidence 4556777776 6678999999999999999999987 66777765 55444333 34789999999998 5444
Q ss_pred --CCEEEecccccCCChhHHHHHHHHHHHhCCC
Q 017495 266 --GDAIFLKWMLHGWTDEHCLKLLKNCWEALPE 296 (370)
Q Consensus 266 --~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~p 296 (370)
..+.+..+.=++.+ ..++.++...-+.
T Consensus 95 ~~~~~~vv~NlPy~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 95 KNQPLLVVGNLPYNIS----SPILRKLLELYRF 123 (262)
T ss_dssp SSSEEEEEEEETGTGH----HHHHHHHHHHGGG
T ss_pred cCCceEEEEEecccch----HHHHHHHhhcccc
Confidence 34555555555444 3566666664444
No 211
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.13 E-value=0.00062 Score=57.41 Aligned_cols=100 Identities=18% Similarity=0.274 Sum_probs=63.2
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------------CCCCeEEeccCCCCCCCC-CEEEec
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------------FPGVEHVGGDMFENVPRG-DAIFLK 272 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------------~~rv~~~~~D~~~~~p~~-D~i~~~ 272 (370)
..-++|||||-|.++..|...||+.-++++.+ -.|.+..++ ..++.+...+...-.|.- .--.++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 45799999999999999999999999998886 555443321 134555555544423321 000111
Q ss_pred ccccCCChhH-----------HHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 273 WMLHGWTDEH-----------CLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 273 ~vLh~~~d~~-----------~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
-.++.++|+. +..++.+..=+|++||.++.+..+.
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 1122223322 2367888888999999999877643
No 212
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.07 E-value=0.0015 Score=62.32 Aligned_cols=90 Identities=11% Similarity=0.050 Sum_probs=68.3
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCC---CCCCEEEecccccC
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENV---PRGDAIFLKWMLHG 277 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~---p~~D~i~~~~vLh~ 277 (370)
..+|||++||+|.++..++...+..+++++|. |..++.++++ ..+++..+|..... ...|+|++.- . .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-G 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-G 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-C
Confidence 46899999999999999998877668999998 8888776642 34668888876522 2239998842 1 2
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
. ...+|..+.+.++|||.|.+.
T Consensus 136 --s--~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 136 --S--PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --C--cHHHHHHHHHHhcCCCEEEEE
Confidence 1 246788878889999999997
No 213
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.06 E-value=0.0016 Score=59.88 Aligned_cols=93 Identities=24% Similarity=0.403 Sum_probs=71.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCC-eEEEeeh-hhHHHhCCC-------------CCCCeEEeccCCCC-CCC--C-
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCI-KGISFDL-PHVLANAPS-------------FPGVEHVGGDMFEN-VPR--G- 266 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~~~~a~~-------------~~rv~~~~~D~~~~-~p~--~- 266 (370)
++..++|-+|||.|..++++++ ||+. +++.+|+ |.|++.++. .+|++++..|.++. ... .
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4568999999999999999876 7955 7889999 999998873 16899999999872 222 2
Q ss_pred CEEEecccccCCChhH--------HHHHHHHHHHhCCCCcEEEEEe
Q 017495 267 DAIFLKWMLHGWTDEH--------CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~--------~~~iL~~~~~~L~pgG~lli~e 304 (370)
|+|+.- ++|+. ...+-.-+++.|+++|.+++.-
T Consensus 367 D~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 367 DVVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred cEEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 777663 34432 1367778899999999998854
No 214
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.04 E-value=0.035 Score=52.61 Aligned_cols=103 Identities=19% Similarity=0.155 Sum_probs=65.4
Q ss_pred CCCeEEEEcCcccHHHHHHH--------hh-------CCCCeEEEeehhh--HHHhCCC------------------CCC
Q 017495 207 GLKVLVDVGGGIGVTLGMIT--------SR-------YPCIKGISFDLPH--VLANAPS------------------FPG 251 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~--------~~-------~p~~~~~~~D~p~--~~~~a~~------------------~~r 251 (370)
+..+|+|+|||+|..+..+. ++ -|...+..-|+|. .-...+. ..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 46799999999997765432 22 2567777667652 1111100 001
Q ss_pred ---CeEEeccCCC-CCCCC--CEEEecccccCCCh--h----------------------------------HHHHHHHH
Q 017495 252 ---VEHVGGDMFE-NVPRG--DAIFLKWMLHGWTD--E----------------------------------HCLKLLKN 289 (370)
Q Consensus 252 ---v~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d--~----------------------------------~~~~iL~~ 289 (370)
+.-+.|.|.. -+|.. +++++++.||.++. + +-..+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2335577777 57776 99999999997652 0 12245555
Q ss_pred HHHhCCCCcEEEEEeecCCC
Q 017495 290 CWEALPENGKVIIVESILPL 309 (370)
Q Consensus 290 ~~~~L~pgG~lli~e~~~~~ 309 (370)
=++-|.|||++++.-...++
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHHhccCcEEEEEEecCCC
Confidence 56778999999998877654
No 215
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.03 E-value=0.0047 Score=51.54 Aligned_cols=106 Identities=22% Similarity=0.223 Sum_probs=66.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeehhhHHHhCCCCCCCeEEec-cCCCC---------CCC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDLPHVLANAPSFPGVEHVGG-DMFEN---------VPR 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~p~~~~~a~~~~rv~~~~~-D~~~~---------~p~ 265 (370)
++-+.+.=+++..+|||+||..|.++.-..++. |+-.+.++|+-.+.. ...++++.+ |+.++ .|.
T Consensus 59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred eehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCC
Confidence 444555535678999999999999999777765 998999999743321 134555555 55543 232
Q ss_pred C--CEEEeccc--------ccC-CChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 266 G--DAIFLKWM--------LHG-WTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 266 ~--D~i~~~~v--------Lh~-~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
. |+|++-+. +.| ..-+-|..+|.-....++|+|.++.--+.
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 2 77765321 111 12233555666666777888888875443
No 216
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.03 E-value=0.00025 Score=59.82 Aligned_cols=138 Identities=20% Similarity=0.167 Sum_probs=78.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCC--CCEEEecccccCCChhH
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPR--GDAIFLKWMLHGWTDEH 282 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~--~D~i~~~~vLh~~~d~~ 282 (370)
.+.++||+|+|.|..+..++..+.. +...++ ..|....+.. +.++ ....+ .+.. -|+|.|.++|.-..++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk-~ynV--l~~~ew~~t~~k~dli~clNlLDRc~~p- 185 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKK-NYNV--LTEIEWLQTDVKLDLILCLNLLDRCFDP- 185 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhc-CCce--eeehhhhhcCceeehHHHHHHHHhhcCh-
Confidence 4689999999999999988876543 222233 2233222221 1221 11122 1222 2999999998654444
Q ss_pred HHHHHHHHHHhCCC-CcEEEEEeecCCC------CCCCCccchhhhhhhhHHhhhcCCCccc--CHHHHHHHHHhCCCCc
Q 017495 283 CLKLLKNCWEALPE-NGKVIIVESILPL------VPENQASSHIVFEQDLFMLAQTTGGRER--SKKEYEALAKNSGFSG 353 (370)
Q Consensus 283 ~~~iL~~~~~~L~p-gG~lli~e~~~~~------~~~~~~~~~~~~~~d~~~~~~~~~~~~~--t~~e~~~ll~~aGf~~ 353 (370)
-++|+.++.+|+| .|++++.= ++|- +....+ ...... + . -+|+.+ ....+.++|+.|||.+
T Consensus 186 -~kLL~Di~~vl~psngrvivaL-VLP~~hYVE~N~~g~~-~rPdn~-----L-e-~~Gr~~ee~v~~~~e~lr~~g~~v 255 (288)
T KOG3987|consen 186 -FKLLEDIHLVLAPSNGRVIVAL-VLPYMHYVETNTSGLP-LRPDNL-----L-E-NNGRSFEEEVARFMELLRNCGYRV 255 (288)
T ss_pred -HHHHHHHHHHhccCCCcEEEEE-EecccceeecCCCCCc-CCchHH-----H-H-hcCccHHHHHHHHHHHHHhcCchh
Confidence 6999999999999 68877632 2221 000000 000000 1 1 134433 2345788999999999
Q ss_pred ceEEecC
Q 017495 354 LEIVCCA 360 (370)
Q Consensus 354 v~~~~~~ 360 (370)
..+...+
T Consensus 256 eawTrlP 262 (288)
T KOG3987|consen 256 EAWTRLP 262 (288)
T ss_pred hhhhcCC
Confidence 8887765
No 217
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.97 E-value=0.0067 Score=49.38 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=64.0
Q ss_pred EEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC---CC---CeEEeccCCC---CCCC--C-CEEEeccccc
Q 017495 211 LVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF---PG---VEHVGGDMFE---NVPR--G-DAIFLKWMLH 276 (370)
Q Consensus 211 vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~---~r---v~~~~~D~~~---~~p~--~-D~i~~~~vLh 276 (370)
++|+|||+|... .+....+. ..++++|. +.++...+.. .. +.+..+|... +... . |++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999976 33343333 46777887 6555543321 11 5777777664 3333 3 998 544444
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
++.+ ....++.+.+.++|+|.+++.......
T Consensus 130 ~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP--PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4443 568899999999999999998886544
No 218
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.93 E-value=0.0054 Score=59.90 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=71.1
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC---CCCCC-CEEEe-
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF------PGVEHVGGDMFE---NVPRG-DAIFL- 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~---~~p~~-D~i~~- 271 (370)
..++.+|||+++|.|.=+.+++....+ -.++..|+ +.-+...+++ .++.+...|... ..+.. |.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 456789999999999999999998754 47788886 5544443321 456777777654 23333 88874
Q ss_pred ---c---------ccccCCChhHH-------HHHHHHHHHhCCCCcEEEEEeecC
Q 017495 272 ---K---------WMLHGWTDEHC-------LKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 272 ---~---------~vLh~~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
+ .+...|+.+++ .++|.++.+.|||||+|+-...+.
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 2 12233444333 589999999999999997766544
No 219
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.85 E-value=0.0023 Score=54.40 Aligned_cols=105 Identities=18% Similarity=0.143 Sum_probs=66.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCe---------EEEeeh-hhHHHhCCCC-------CCCeEEeccC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIK---------GISFDL-PHVLANAPSF-------PGVEHVGGDM 259 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-p~~~~~a~~~-------~rv~~~~~D~ 259 (370)
.++.... +++...|+|-=||+|+++++.+...++.. +++.|. +.+++.++.+ ..+.+...|+
T Consensus 19 ~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 19 ALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 3444333 77788999999999999998877777766 889998 8888776542 4588999999
Q ss_pred CC-CCCC-C-CEEEecccccC-CCh-hH----HHHHHHHHHHhCCCCcEEEE
Q 017495 260 FE-NVPR-G-DAIFLKWMLHG-WTD-EH----CLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 260 ~~-~~p~-~-D~i~~~~vLh~-~~d-~~----~~~iL~~~~~~L~pgG~lli 302 (370)
.+ +.+. . |+|++.-=.-. ... .+ -.++++.+.++++|...+++
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 88 5343 3 98887321111 111 11 23678889999999444443
No 220
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.82 E-value=0.045 Score=47.21 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=82.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCCCC-CC-C-CEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFENV-PR-G-DAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~~~-p~-~-D~i~~~~vL 275 (370)
...++.||||-++.+...|.+..+...++..|. +.-++.+.+ .+++++..+|.+.+. ++ . |+|+++.+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM- 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM- 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence 445599999999999999999999999999996 665555443 268999999998843 33 2 88877643
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcce
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLE 355 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~ 355 (370)
.-.-...||.+-.+-|+.--++++. | +. ...++++||...+|.++.
T Consensus 95 ---GG~lI~~ILee~~~~l~~~~rlILQ----P------------------------n~---~~~~LR~~L~~~~~~I~~ 140 (226)
T COG2384 95 ---GGTLIREILEEGKEKLKGVERLILQ----P------------------------NI---HTYELREWLSANSYEIKA 140 (226)
T ss_pred ---cHHHHHHHHHHhhhhhcCcceEEEC----C------------------------CC---CHHHHHHHHHhCCceeee
Confidence 4456678888888887754455541 1 11 245788888888888765
No 221
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=96.82 E-value=0.00055 Score=45.27 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=38.0
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+.|++.|... ++++|+.|||+++|+ +..-+.|+|..|+..|++++
T Consensus 6 l~iL~~l~~~-------~~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~ 50 (52)
T PF09339_consen 6 LRILEALAES-------GGPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVER 50 (52)
T ss_dssp HHHHHCHHCT-------BSCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcC-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeec
Confidence 3467777765 246899999999999 99999999999999999985
No 222
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.82 E-value=0.0021 Score=53.59 Aligned_cols=96 Identities=18% Similarity=0.211 Sum_probs=70.3
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCCCEEEecccccCCCh
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRGDAIFLKWMLHGWTD 280 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~D~i~~~~vLh~~~d 280 (370)
..+.|+|.|+|-++.-.++. --+++.+.. |...+.+.++ .+++++.+|..+ .+..+|+|+|-..=-.+=+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 57899999999988876664 346777776 7776666653 679999999998 7756699987543222223
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 281 EHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 281 ~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+.-..+++.+.+-|+-++.++=.+-.
T Consensus 112 E~qVpV~n~vleFLr~d~tiiPq~v~ 137 (252)
T COG4076 112 EKQVPVINAVLEFLRYDPTIIPQEVR 137 (252)
T ss_pred ccccHHHHHHHHHhhcCCccccHHHh
Confidence 44467889999999988888754443
No 223
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.82 E-value=0.022 Score=51.59 Aligned_cols=150 Identities=13% Similarity=0.174 Sum_probs=93.6
Q ss_pred HHHHHHhhcC---CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh------hhHHHhCCC-----------------
Q 017495 195 MNKILDVYRG---FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL------PHVLANAPS----------------- 248 (370)
Q Consensus 195 ~~~l~~~~~~---~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~------p~~~~~a~~----------------- 248 (370)
++.+...+++ .+...+||-=|||.|.++..|+...+.+.+--+.. .-++...+.
T Consensus 135 i~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~ 214 (369)
T KOG2798|consen 135 IEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSL 214 (369)
T ss_pred HHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccccc
Confidence 4444444442 12357899999999999999999887766632221 001111000
Q ss_pred ----------------------CCCCeEEeccCCC--CCCC---C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEE
Q 017495 249 ----------------------FPGVEHVGGDMFE--NVPR---G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKV 300 (370)
Q Consensus 249 ----------------------~~rv~~~~~D~~~--~~p~---~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~l 300 (370)
.+....-.|||.+ ..+. . |+|+.++.+-. ..++...|+.|.+.|||||+-
T Consensus 215 ~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a~NileYi~tI~~iLk~GGvW 292 (369)
T KOG2798|consen 215 SRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--AHNILEYIDTIYKILKPGGVW 292 (369)
T ss_pred ccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--hHHHHHHHHHHHHhccCCcEE
Confidence 0123446689887 3333 2 99988876653 457889999999999999988
Q ss_pred EEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEec
Q 017495 301 IIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 301 li~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
+=..+..-.-.+.. +.. ...+-+.+.+++.++.+.-||++++-..+
T Consensus 293 iNlGPLlYHF~d~~---------g~~----~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 293 INLGPLLYHFEDTH---------GVE----NEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred EeccceeeeccCCC---------CCc----ccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 76665443211100 000 01234568999999999999998875543
No 224
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=96.80 E-value=0.00092 Score=43.18 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=38.6
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCcee
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILR 96 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 96 (370)
++.|+..|.++ |.++.||++.+++ ++..+++.|+.|...|+++
T Consensus 4 R~~Il~~L~~~---------~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 4 RLRILKLLSEG---------PLTVSELAEELGL----SQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp HHHHHHHHTTS---------SEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhC---------CCchhhHHHhccc----cchHHHHHHHHHHHCcCee
Confidence 56678888886 8999999999999 9999999999999999996
No 225
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.76 E-value=0.0056 Score=56.21 Aligned_cols=148 Identities=16% Similarity=0.090 Sum_probs=97.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC---------CCCeEEeccCCC-CCCC----------C
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF---------PGVEHVGGDMFE-NVPR----------G 266 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~---------~rv~~~~~D~~~-~~p~----------~ 266 (370)
+...|+-+|||-=.-...+-.. +++++.-+|+|++++..++. .+++++..|+++ +++. .
T Consensus 92 g~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~ 170 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRLDWP-KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSR 170 (297)
T ss_pred cccEEEEeccccccceeecCCC-CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCC
Confidence 3689999999977666555431 25888899999999875542 379999999995 5432 1
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCc-cchhhhhh--hhHHhhhcCCCcccCHHHH
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQA-SSHIVFEQ--DLFMLAQTTGGRERSKKEY 342 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~-~~~~~~~~--d~~~~~~~~~~~~~t~~e~ 342 (370)
=++++-.+|.+++.++..++|++|....+||..++.............. ........ ...... ..-......++
T Consensus 171 pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~e~ 248 (297)
T COG3315 171 PTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGE--LVYFGDDPAEI 248 (297)
T ss_pred CeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhcccccccccc--ceeccCCHHHH
Confidence 5788889999999999999999999999999988876541111100000 00000000 000000 00112347899
Q ss_pred HHHHHhCCCCcceEE
Q 017495 343 EALAKNSGFSGLEIV 357 (370)
Q Consensus 343 ~~ll~~aGf~~v~~~ 357 (370)
..++.+.||..+...
T Consensus 249 ~~~l~~~g~~~~~~~ 263 (297)
T COG3315 249 ETWLAERGWRSTLNR 263 (297)
T ss_pred HHHHHhcCEEEEecC
Confidence 999999999887663
No 226
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.72 E-value=0.0019 Score=55.64 Aligned_cols=91 Identities=24% Similarity=0.323 Sum_probs=64.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCCCCCCC--CEEEeccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFENVPRG--DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~~~p~~--D~i~~~~v 274 (370)
..+..+|+|.-||.|.++..+++..+...++..|+ |..++..++ .+++....+|..+-.+.. |-|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l- 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL- 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE---
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC-
Confidence 34678999999999999999999777888999998 888776543 257889999988733232 8777753
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEE
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVI 301 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~ll 301 (370)
| ..+..+|..+.+.+++||.+.
T Consensus 178 ----p-~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 ----P-ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----T-SSGGGGHHHHHHHEEEEEEEE
T ss_pred ----h-HHHHHHHHHHHHHhcCCcEEE
Confidence 2 233578899999999998764
No 227
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.72 E-value=0.0057 Score=49.76 Aligned_cols=96 Identities=14% Similarity=0.193 Sum_probs=62.4
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhh----CCCCeEEEeeh-hhHHHhCCCC---------CCCeEEeccCCCC-CCCC-CE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSR----YPCIKGISFDL-PHVLANAPSF---------PGVEHVGGDMFEN-VPRG-DA 268 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-p~~~~~a~~~---------~rv~~~~~D~~~~-~p~~-D~ 268 (370)
..+..+|+|+|||.|.++..|+.. .++++++++|. +..++.+... .++.+..+++... .... ++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 357789999999999999999882 28899999997 6665554431 3466666665542 2233 77
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
++.-|.--+++ ..+|+...+ |+-..++.-++.
T Consensus 103 ~vgLHaCG~Ls----~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 103 LVGLHACGDLS----DRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred EEEeecccchH----HHHHHHHHH---cCCCEEEEcCCc
Confidence 77655554444 345555555 565655544443
No 228
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=96.72 E-value=0.0014 Score=44.91 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=44.5
Q ss_pred HHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 33 PMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 33 ~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
..+|..-.++.|++.|... +|.|+.+||+.+|+ ++..+++.|+.|...|+|+..
T Consensus 4 ~~aL~~p~R~~Il~~L~~~--------~~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~~ 57 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLASN--------GPMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEVE 57 (61)
T ss_dssp HHHHTSHHHHHHHHHHHHC--------STBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhCCHHHHHHHHHHhcC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 3455556778888888443 38999999999999 999999999999999999964
No 229
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.68 E-value=0.002 Score=60.60 Aligned_cols=101 Identities=18% Similarity=0.121 Sum_probs=77.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCC-CCCCC--CEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFE-NVPRG--DAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~-~~p~~--D~i~~~~vL 275 (370)
+...++|+|||.|.....+.. +.....+++|. +.-...... .....++.+|+.. ++++. |.+.+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 455899999999998876654 66777888876 443333322 1445668889888 67765 999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCC
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILPLV 310 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~ 310 (370)
.|.++. ..++++++++++|||.++..|++....
T Consensus 189 ~~~~~~--~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 189 CHAPDL--EKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred ccCCcH--HHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 998865 688999999999999999999977544
No 230
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.082 Score=44.96 Aligned_cols=140 Identities=16% Similarity=0.137 Sum_probs=95.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-h----hHHHhCCCCCCCeEEeccCCCCCC-----CC-CEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-P----HVLANAPSFPGVEHVGGDMFENVP-----RG-DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p----~~~~~a~~~~rv~~~~~D~~~~~p-----~~-D~i~~~~ 273 (370)
+++..+||=+|..+|+...++..-.++-.+.++.. | +.+..+.++.++--+.+|...|+. +. |+|+.-
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D- 152 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD- 152 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe-
Confidence 67899999999999999999999888666777765 4 345566777888889999877543 23 887753
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCc
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSG 353 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 353 (370)
+- .++++.-+..++..-||+||.++++=-...-+.... ... .-++-.+.|++.||++
T Consensus 153 VA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~d-------------------p~~-vf~~ev~kL~~~~f~i 209 (231)
T COG1889 153 VA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTAD-------------------PEE-VFKDEVEKLEEGGFEI 209 (231)
T ss_pred cC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCC-------------------HHH-HHHHHHHHHHhcCcee
Confidence 21 235677788999999999998877544332211110 000 0122335668889999
Q ss_pred ceEEecC---CCeeEEEE
Q 017495 354 LEIVCCA---YNSWVMEF 368 (370)
Q Consensus 354 v~~~~~~---~~~~~~e~ 368 (370)
.+...+. ..+.++.+
T Consensus 210 ~e~~~LePye~DH~~i~~ 227 (231)
T COG1889 210 LEVVDLEPYEKDHALIVA 227 (231)
T ss_pred eEEeccCCcccceEEEEE
Confidence 9887764 45555544
No 231
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.62 E-value=0.017 Score=48.73 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=69.7
Q ss_pred cCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCCCCEEEeccccc
Q 017495 203 RGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPRGDAIFLKWMLH 276 (370)
Q Consensus 203 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~~D~i~~~~vLh 276 (370)
++.-..++|||+|.|+|..++.-++.. -..++..|. |......+-+ -.|.+...|..-+-+..|+|+...+++
T Consensus 75 PetVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy 153 (218)
T COG3897 75 PETVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFY 153 (218)
T ss_pred ccccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceec
Confidence 334567899999999999888776643 223444454 6555554432 246777777766333349999999998
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
+.+ ...+++....+....|-.+++.++-.+.
T Consensus 154 ~~~--~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 154 NHT--EADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred Cch--HHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 754 4567777555666667777877766554
No 232
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.61 E-value=0.0017 Score=52.42 Aligned_cols=39 Identities=31% Similarity=0.423 Sum_probs=36.8
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|+|++.|++.|+.-++-..+++.+++.|||||+|-|.-+
T Consensus 49 d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 49 DAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 999999999999999999999999999999999999654
No 233
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.53 E-value=0.071 Score=46.58 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=88.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh--hhHHHhCCCCCCCeEEeccCCC-C----CCCC-
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL--PHVLANAPSFPGVEHVGGDMFE-N----VPRG- 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--p~~~~~a~~~~rv~~~~~D~~~-~----~p~~- 266 (370)
+...++.+.-..++..+||||+.||.++..++++. -.+++++|. .+.....+..+||...+.--.. - +.+.
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence 33445555412367899999999999999999863 346777885 4444445555666554432222 1 2222
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEE-eecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV-ESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEAL 345 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~-e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 345 (370)
|++++--.+ . -...+|-.+...++|++-++.. -+-....+.. ........+ +........++.++
T Consensus 146 d~~v~DvSF--I---SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~--v~kkGvv~d-------~~~~~~v~~~i~~~ 211 (245)
T COG1189 146 DLIVIDVSF--I---SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQ--VGKKGVVRD-------PKLHAEVLSKIENF 211 (245)
T ss_pred CeEEEEeeh--h---hHHHHHHHHHHhcCCCceEEEEecchhhhhhhh--cCcCceecC-------cchHHHHHHHHHHH
Confidence 777764332 1 3468899999999999777652 2211111000 000000000 11222346788999
Q ss_pred HHhCCCCcceEEecC
Q 017495 346 AKNSGFSGLEIVCCA 360 (370)
Q Consensus 346 l~~aGf~~v~~~~~~ 360 (370)
+++.||++..+.+.+
T Consensus 212 ~~~~g~~~~gl~~Sp 226 (245)
T COG1189 212 AKELGFQVKGLIKSP 226 (245)
T ss_pred HhhcCcEEeeeEccC
Confidence 999999999988764
No 234
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.0053 Score=49.07 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=47.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCCC---CEEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPRG---DAIFLKW 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~~---D~i~~~~ 273 (370)
.+..++|+|||.|-+..+. .+|. -.++++|+ |+.++.++.+ -.+++.+.|+.+..+.+ |..+++-
T Consensus 48 Egkkl~DLgcgcGmLs~a~--sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAF--SMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred cCcchhhhcCchhhhHHHh--hcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 5689999999999988433 3444 46899999 9999988765 25678888888754432 7666644
No 235
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.51 E-value=0.004 Score=55.65 Aligned_cols=91 Identities=13% Similarity=0.093 Sum_probs=59.6
Q ss_pred EEeccCCC--CC------CC-CCEEEecccccCCC--hhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhh
Q 017495 254 HVGGDMFE--NV------PR-GDAIFLKWMLHGWT--DEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFE 322 (370)
Q Consensus 254 ~~~~D~~~--~~------p~-~D~i~~~~vLh~~~--d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 322 (370)
++..|... +. |+ .|+|++..+|.... .++-...++++.++|||||+|+++....... + ..
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~--------Y-~v 208 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY--------Y-MV 208 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE--------E-EE
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee--------E-EE
Confidence 67788876 22 33 49999999998754 3345699999999999999999988754321 0 00
Q ss_pred hhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEe
Q 017495 323 QDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 323 ~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~ 358 (370)
... . ...-..+.+.+++.|+++||.+.+...
T Consensus 209 G~~-~----F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 209 GGH-K----FPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp TTE-E----EE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred CCE-e----cccccCCHHHHHHHHHHcCCEEEeccc
Confidence 000 0 011124789999999999999988775
No 236
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.49 E-value=0.008 Score=54.25 Aligned_cols=96 Identities=13% Similarity=0.187 Sum_probs=57.9
Q ss_pred CCCeEEEEcCcccHHHHH-HHhh-CCCCeEEEeeh-hhHHHhCCC--------CCCCeEEeccCCC-CC--CCCCEEEec
Q 017495 207 GLKVLVDVGGGIGVTLGM-ITSR-YPCIKGISFDL-PHVLANAPS--------FPGVEHVGGDMFE-NV--PRGDAIFLK 272 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~-l~~~-~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~~D~~~-~~--p~~D~i~~~ 272 (370)
.+.+|+=||||.=-++.- +++. .++..++++|. |...+.+++ ..+++|+.+|..+ .. .+.|+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 457999999997755554 4433 46788999998 887776643 2579999999876 32 233999887
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
.... .+.++..++|.++.+.|+||..|++.
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 7664 34445679999999999999988885
No 237
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.48 E-value=0.035 Score=47.56 Aligned_cols=119 Identities=17% Similarity=0.160 Sum_probs=81.0
Q ss_pred HHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-----CCCeEEeccCCC
Q 017495 187 MSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-----PGVEHVGGDMFE 261 (370)
Q Consensus 187 m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-----~rv~~~~~D~~~ 261 (370)
|.++....+......+ ..+..|||.||=|-|-....+.++-|..+.++---|+|....+.. .+|....|-..+
T Consensus 83 Mm~WEtpiMha~A~ai--~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeD 160 (271)
T KOG1709|consen 83 MMRWETPIMHALAEAI--STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWED 160 (271)
T ss_pred hhhhhhHHHHHHHHHH--hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHh
Confidence 3334444444444433 356789999999999998888888788777655458888877653 567666665444
Q ss_pred ---CCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 262 ---NVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 262 ---~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
..|.. |-|+.--.-.+ -++...+-+.+.++|||+|.+-......-+
T Consensus 161 vl~~L~d~~FDGI~yDTy~e~--yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 161 VLNTLPDKHFDGIYYDTYSEL--YEDLRHFHQHVVRLLKPEGVFSYFNGLGAD 211 (271)
T ss_pred hhccccccCcceeEeechhhH--HHHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence 34543 77665433222 256788899999999999999887766544
No 238
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=96.47 E-value=0.004 Score=48.64 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccc
Q 017495 31 VLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERV 110 (370)
Q Consensus 31 ~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~ 110 (370)
-.+.+|.--.++.|+..|..+ ++.++.||++.+++ .+..+++.|+.|...|+|+..+ .|+ ...
T Consensus 8 ~~fkaLadptRl~IL~~L~~~--------~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~r----~Gr-~~~ 70 (117)
T PRK10141 8 QLFKILSDETRLGIVLLLRES--------GELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDRK----QGK-WVH 70 (117)
T ss_pred HHHHHhCCHHHHHHHHHHHHc--------CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEE----EcC-EEE
Confidence 445667777889999999764 37999999999999 9999999999999999998642 232 355
Q ss_pred eecch
Q 017495 111 YGAAP 115 (370)
Q Consensus 111 y~~~~ 115 (370)
|++++
T Consensus 71 Y~l~~ 75 (117)
T PRK10141 71 YRLSP 75 (117)
T ss_pred EEECc
Confidence 77765
No 239
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.059 Score=48.82 Aligned_cols=143 Identities=22% Similarity=0.204 Sum_probs=99.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC--CCCeEEEeehhhHHHhCCC----C------------------------CCCeE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY--PCIKGISFDLPHVLANAPS----F------------------------PGVEH 254 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~p~~~~~a~~----~------------------------~rv~~ 254 (370)
.+....|+-+|||.-.....|...+ +.++++-+|.|++++.... . .+...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4577899999999999999999988 7889999999887764321 0 23444
Q ss_pred EeccCCC--CC-----C----CC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhh
Q 017495 255 VGGDMFE--NV-----P----RG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVF 321 (370)
Q Consensus 255 ~~~D~~~--~~-----p----~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~ 321 (370)
...|..+ .. + .. -+++.--+|-++++++...+|+.+.+.++ .+.+++.|.+.+.++ +..
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D~-------Fg~ 236 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPNDR-------FGK 236 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCCh-------HHH
Confidence 5555542 10 0 01 45566678889999999999999998876 577888899886642 222
Q ss_pred hhhhHHhhhc--CC----C--cccCHHHHHHHHHhCCCCcceEEec
Q 017495 322 EQDLFMLAQT--TG----G--RERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 322 ~~d~~~~~~~--~~----~--~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
.|.... .+ | ...|.+..++-+.++||+.+.+..+
T Consensus 237 ----vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 237 ----VMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred ----HHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 222111 01 1 1237888899999999999887664
No 240
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.38 E-value=0.012 Score=50.94 Aligned_cols=140 Identities=17% Similarity=0.106 Sum_probs=90.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-h----hHHHhCCCCCCCeEEeccCCCCCC-----CC-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-P----HVLANAPSFPGVEHVGGDMFENVP-----RG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p----~~~~~a~~~~rv~~~~~D~~~~~p-----~~-D~i~~~ 272 (370)
+.+..+||-+|..+|+...++..--. +-.+.+++. | +.+..++++.+|--+-.|...|.. +. |+|+.-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 67889999999999999999988754 677888886 5 455566677888888899886421 22 887764
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
-. + +++..-++.++..-||+||.++|+=-... .|... ...-.-.+=.+.|++.||+
T Consensus 151 Va-Q---p~Qa~I~~~Na~~fLk~gG~~~i~iKa~s--------------iD~t~------~p~~vf~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 151 VA-Q---PDQARIAALNARHFLKPGGHLIISIKARS--------------IDSTA------DPEEVFAEEVKKLKEEGFK 206 (229)
T ss_dssp -S-S---TTHHHHHHHHHHHHEEEEEEEEEEEEHHH--------------H-SSS------SHHHHHHHHHHHHHCTTCE
T ss_pred CC-C---hHHHHHHHHHHHhhccCCcEEEEEEecCc--------------ccCcC------CHHHHHHHHHHHHHHcCCC
Confidence 33 2 35778889999999999999998643211 11100 0000012234566888999
Q ss_pred cceEEecC---CCeeEEEE
Q 017495 353 GLEIVCCA---YNSWVMEF 368 (370)
Q Consensus 353 ~v~~~~~~---~~~~~~e~ 368 (370)
..+...+. .++.++.+
T Consensus 207 ~~e~i~LePy~~dH~~vv~ 225 (229)
T PF01269_consen 207 PLEQITLEPYERDHAMVVG 225 (229)
T ss_dssp EEEEEE-TTTSTTEEEEEE
T ss_pred hheEeccCCCCCCcEEEEE
Confidence 98887764 45555544
No 241
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.32 E-value=0.06 Score=47.85 Aligned_cols=105 Identities=17% Similarity=0.234 Sum_probs=72.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCC----CC---CCCeEEeccCCC-CCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAP----SF---PGVEHVGGDMFE-NVP 264 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~----~~---~rv~~~~~D~~~-~~p 264 (370)
..-++..++ ..+..+|++-|.|+|.++.++++.. |.-+.+-+|. ..-.+.+. ++ +++++...|+.. -+.
T Consensus 94 ia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 94 IAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 345666666 8899999999999999999999985 7778888886 33333333 22 678998888876 333
Q ss_pred C----CCEEEecccccCCChhHHHHHHHHHHHhCCCCc-EEEEEeecC
Q 017495 265 R----GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENG-KVIIVESIL 307 (370)
Q Consensus 265 ~----~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG-~lli~e~~~ 307 (370)
. +|.|++ +++.+. ..+--++++||-+| +|+-..++.
T Consensus 173 ~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 173 IKSLKADAVFL-----DLPAPW--EAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred ccccccceEEE-----cCCChh--hhhhhhHHHhhhcCceEEeccHHH
Confidence 2 288887 344442 44566667888655 666655544
No 242
>PHA00738 putative HTH transcription regulator
Probab=96.30 E-value=0.006 Score=46.13 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=49.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
.++.|++.|..+ ++.++.+|++.+++ .+..+++.|+.|..+|+|...+ .|+ ...|++.+..
T Consensus 13 tRr~IL~lL~~~--------e~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~srK----~Gr-~vyY~Ln~~~ 73 (108)
T PHA00738 13 LRRKILELIAEN--------YILSASLISHTLLL----SYTTVLRHLKILNEQGYIELYK----EGR-TLYAKIRENS 73 (108)
T ss_pred HHHHHHHHHHHc--------CCccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEEE----ECC-EEEEEECCCc
Confidence 577888989876 36999999999999 9999999999999999999752 232 4567776544
No 243
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=96.29 E-value=0.0045 Score=44.96 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=49.5
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
++++|+..|... +..+..+|.+.+++ +...+++.|+.|...|+|+..+. ..+++....|++|+.++.
T Consensus 1 vRl~Il~~L~~~--------~~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~-~~~~~p~t~~~lT~~Gr~ 67 (80)
T PF13601_consen 1 VRLAILALLYAN--------EEATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKE-FEGRRPRTWYSLTDKGRE 67 (80)
T ss_dssp HHHHHHHHHHHH--------SEEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE--SSS--EEEEEE-HHHHH
T ss_pred CHHHHHHHHhhc--------CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEe-ccCCCCeEEEEECHHHHH
Confidence 467888888875 37999999999999 99999999999999999997542 122222345889988863
No 244
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=96.28 E-value=0.0095 Score=41.76 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=45.9
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecch
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAP 115 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~ 115 (370)
.+-.|+..|... |+ .++++.+||+.+|+ +...++++|..|...|+|+... . .+..|..+.
T Consensus 7 ~~~~IL~~L~~~-----g~-~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~---~---~~~~W~i~~ 66 (68)
T smart00550 7 LEEKILEFLENS-----GD-ETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQG---G---TPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHC-----CC-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC---C---CCCceEeec
Confidence 455678888875 21 13999999999999 9999999999999999999631 1 136677653
No 245
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.23 E-value=0.0019 Score=49.68 Aligned_cols=90 Identities=24% Similarity=0.266 Sum_probs=39.5
Q ss_pred EEEcCcccHHHHHHHhhCCCC---eEEEeeh-h---hHHHhCCC---CCCCeEEeccCCCC---CC-CC-CEEEeccccc
Q 017495 212 VDVGGGIGVTLGMITSRYPCI---KGISFDL-P---HVLANAPS---FPGVEHVGGDMFEN---VP-RG-DAIFLKWMLH 276 (370)
Q Consensus 212 LDvG~G~G~~~~~l~~~~p~~---~~~~~D~-p---~~~~~a~~---~~rv~~~~~D~~~~---~p-~~-D~i~~~~vLh 276 (370)
||||+..|..+..+++..+.. +++.+|. + ...+..++ .++++++.++..+. .+ .. |++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999998887655 5899997 5 23333332 25799999998752 23 23 8888753 22
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
. .+.+..-++.+.+.|+|||.+++-|
T Consensus 80 ~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 S--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2 3456788999999999999988754
No 246
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.21 E-value=0.0089 Score=55.53 Aligned_cols=101 Identities=18% Similarity=0.231 Sum_probs=65.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhh-------CCCCeEEEeeh-hhHHHhCCC--------CCCCeEEeccCCC-C-CC--
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSR-------YPCIKGISFDL-PHVLANAPS--------FPGVEHVGGDMFE-N-VP-- 264 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~~D~~~-~-~p-- 264 (370)
.....+|+|-.||+|.++.++.+. .+...++++|. +..+..++. .....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456679999999999999988874 47788999997 666554431 1234688889876 2 22
Q ss_pred CC-CEEEec--ccccCCCh-----------------hHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 265 RG-DAIFLK--WMLHGWTD-----------------EHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 265 ~~-D~i~~~--~vLh~~~d-----------------~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.. |+|++. +....|.+ ..-..++..+.+.|++||++.++-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 22 988873 22221111 1113588999999999999877544
No 247
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.19 E-value=0.0055 Score=49.75 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=41.2
Q ss_pred eEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC
Q 017495 210 VLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE 261 (370)
Q Consensus 210 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~ 261 (370)
+++|||||.|.++..+++.+|..+++.+|. |...+.+++. .+++++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999997 7777655432 346666665543
No 248
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.17 E-value=0.021 Score=49.47 Aligned_cols=98 Identities=11% Similarity=0.157 Sum_probs=72.2
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCC-------CCCCCeEEeccCCCCC----C----CC-C
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAP-------SFPGVEHVGGDMFENV----P----RG-D 267 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~-------~~~rv~~~~~D~~~~~----p----~~-D 267 (370)
-++++++|||.=||..+..++.+.|. -+++.+|. ++..+.+. -...|+++.++..+.. + .. |
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 35789999999999999999999875 47888887 55554443 2367999999987632 1 12 8
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.+++- +|- ++......++.+++++||.|++-....+
T Consensus 152 faFvD----adK-~nY~~y~e~~l~Llr~GGvi~~DNvl~~ 187 (237)
T KOG1663|consen 152 FAFVD----ADK-DNYSNYYERLLRLLRVGGVIVVDNVLWP 187 (237)
T ss_pred EEEEc----cch-HHHHHHHHHHHhhcccccEEEEeccccC
Confidence 87753 333 3456899999999999999887554443
No 249
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.12 E-value=0.0066 Score=57.38 Aligned_cols=51 Identities=12% Similarity=0.069 Sum_probs=41.9
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE 261 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~ 261 (370)
.+|||++||+|.++..+++... +++++|. +.+++.++++ .+++++.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998763 8999998 8888877653 368888888765
No 250
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.11 E-value=0.026 Score=51.40 Aligned_cols=100 Identities=19% Similarity=0.256 Sum_probs=71.4
Q ss_pred CCeEEEEcCcccHHHHHHHhhC--------------------CCCeEEEeeh---hhHHHhCC-----C-----------
Q 017495 208 LKVLVDVGGGIGVTLGMITSRY--------------------PCIKGISFDL---PHVLANAP-----S----------- 248 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---p~~~~~a~-----~----------- 248 (370)
..+||-||||.|.-..+|+..+ +.+.++.+|+ ..|++... .
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3799999999998887777665 2257888886 33443211 0
Q ss_pred -----C--CCCeEEeccCCC-CCC--------CC-CEEEecccccCC---ChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 249 -----F--PGVEHVGGDMFE-NVP--------RG-DAIFLKWMLHGW---TDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 249 -----~--~rv~~~~~D~~~-~~p--------~~-D~i~~~~vLh~~---~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
. -.++|...|+.+ ..+ +. ++|.+-++++-+ +..+..++|.++-..++||..|+|+|..-
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 0 147899999987 321 12 888877776653 33456799999999999999999999744
No 251
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.11 E-value=0.0025 Score=52.77 Aligned_cols=61 Identities=25% Similarity=0.427 Sum_probs=43.1
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---CC--C-CCEEEe
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---VP--R-GDAIFL 271 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~p--~-~D~i~~ 271 (370)
..|+|+-||.|..+.++++.+. +++.+|+ |..++.++.+ ++|+++.+|+++. .. . .|+|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 3699999999999999999864 5777776 6666665532 5899999999872 11 1 388876
No 252
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.08 E-value=0.024 Score=48.68 Aligned_cols=99 Identities=20% Similarity=0.221 Sum_probs=56.6
Q ss_pred CCCeEEEEcCcccHHHHHHHh---hC-CCCeEEEeeh--hhHHHhCCCC----CCCeEEeccCCCC--------C--CCC
Q 017495 207 GLKVLVDVGGGIGVTLGMITS---RY-PCIKGISFDL--PHVLANAPSF----PGVEHVGGDMFEN--------V--PRG 266 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~---~~-p~~~~~~~D~--p~~~~~a~~~----~rv~~~~~D~~~~--------~--p~~ 266 (370)
++..|+|+|.-.|+.+..++. .+ +..+++++|+ ...-..+.+. .||+++.||..++ . +..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 378999999999888876554 44 7789999986 2222222332 7999999998762 1 111
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.+|+. ..=|.+ +++.+.|+.....+.||+++++-|....
T Consensus 112 ~vlVil-Ds~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 112 PVLVIL-DSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTIIE 151 (206)
T ss_dssp SEEEEE-SS------SSHHHHHHHHHHT--TT-EEEETSHHHH
T ss_pred ceEEEE-CCCccH--HHHHHHHHHhCccCCCCCEEEEEecccc
Confidence 34433 333332 3567889999999999999999777553
No 253
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.00 E-value=0.0089 Score=52.70 Aligned_cols=100 Identities=15% Similarity=0.152 Sum_probs=65.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCCC--CEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPRG--DAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~~--D~i~~~~vLh~ 277 (370)
+.+.+|+|||||.=-++.-.....|+..++++|+ ...++..... ...++...|.....|.. |+.++.-++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 4589999999999999888778788999999998 7666654432 46778888999865543 99999999987
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
+..+.. ..--++.+.+. .-+++|..+..
T Consensus 184 le~q~~-g~g~~ll~~~~-~~~~vVSfPtr 211 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALR-SPHVVVSFPTR 211 (251)
T ss_dssp HHHHST-THHHHHHHHSC-ESEEEEEEES-
T ss_pred HHHHhc-chHHHHHHHhC-CCeEEEecccc
Confidence 665443 22223334443 23667666654
No 254
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=96.00 E-value=0.013 Score=43.60 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=45.9
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
+.|++.|... .+++|+.+||+.+++ +...+.+.|+.|+..|++... ++ ++.|.+++.
T Consensus 8 ~~Il~~l~~~-------~~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~---~~----~~~y~l~~~ 64 (91)
T smart00346 8 LAVLRALAEE-------PGGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQD---GQ----NGRYRLGPK 64 (91)
T ss_pred HHHHHHHHhC-------CCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeec---CC----CCceeecHH
Confidence 4567777664 138999999999999 999999999999999999863 11 367888764
No 255
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=95.95 E-value=0.0098 Score=38.43 Aligned_cols=45 Identities=11% Similarity=0.273 Sum_probs=37.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCcee
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILR 96 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 96 (370)
.+..|+..|.+. ++.|..|||+.+|+ +...+.+.|+.|...|+++
T Consensus 4 ~~~~Il~~l~~~--------~~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLREN--------PRITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHC--------TTS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence 355678888876 37999999999999 9999999999999999985
No 256
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.92 E-value=0.1 Score=48.40 Aligned_cols=102 Identities=18% Similarity=0.120 Sum_probs=71.9
Q ss_pred hcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEec-cCCC-CCCCC--CEEE
Q 017495 202 YRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGG-DMFE-NVPRG--DAIF 270 (370)
Q Consensus 202 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~-D~~~-~~p~~--D~i~ 270 (370)
+.+..++..|||==||||++++...- =++++++.|+ ..++.-++.+ ....+... |+.. +++.. |.|+
T Consensus 192 La~v~~G~~vlDPFcGTGgiLiEagl--~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIa 269 (347)
T COG1041 192 LARVKRGELVLDPFCGTGGILIEAGL--MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIA 269 (347)
T ss_pred HhccccCCEeecCcCCccHHHHhhhh--cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEE
Confidence 33355678999999999999998776 5788999998 7777777653 23434444 7776 67663 7776
Q ss_pred ec------ccccCCC-hhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 271 LK------WMLHGWT-DEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 271 ~~------~vLh~~~-d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+- .....-. ++-..++|+.++++|++||++++.-+
T Consensus 270 tDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 270 TDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 61 1121111 34467999999999999999998544
No 257
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.90 E-value=0.028 Score=53.40 Aligned_cols=96 Identities=18% Similarity=0.105 Sum_probs=72.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCC-eEEEeeh-hhHHHhCCCC--------CCCeEEeccCCCCC----CC--C-CEE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCI-KGISFDL-PHVLANAPSF--------PGVEHVGGDMFENV----PR--G-DAI 269 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~~~----p~--~-D~i 269 (370)
...+|||+=|=||.++.+.+. .+. ++|.+|. ...++.++++ .++.++++|.++.+ .. . |+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 478999999999999998887 455 8999998 7778877653 46899999998722 22 2 999
Q ss_pred Eec--------ccccCCC-hhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 270 FLK--------WMLHGWT-DEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 270 ~~~--------~vLh~~~-d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
++- ... |+ ..+-..++..+.+.|+|||.++++...
T Consensus 295 ilDPPsF~r~k~~~--~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 295 ILDPPSFARSKKQE--FSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred EECCcccccCcccc--hhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 881 111 11 123458899999999999999987654
No 258
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.79 E-value=0.031 Score=55.93 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=43.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCC--------CeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCC-------CC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPC--------IKGISFDL-PHVLANAPSF------PGVEHVGGDMFEN-------VP 264 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~-------~p 264 (370)
...+|+|.+||+|.++..+++..+. ..++++|+ +..+..++.. ..+.+...|+... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999887642 45688887 7666655321 1345555555431 11
Q ss_pred CC-CEEEe
Q 017495 265 RG-DAIFL 271 (370)
Q Consensus 265 ~~-D~i~~ 271 (370)
.. |+|+.
T Consensus 111 ~~fD~IIg 118 (524)
T TIGR02987 111 DLFDIVIT 118 (524)
T ss_pred CcccEEEe
Confidence 22 88887
No 259
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=95.78 E-value=0.0088 Score=43.79 Aligned_cols=48 Identities=27% Similarity=0.329 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
.++|..+||+.+++ ++..++++|..|...|+++..+ |+ ++.|.++...
T Consensus 24 ~~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~~-----G~-~GGy~L~~~~ 71 (83)
T PF02082_consen 24 KPVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESSR-----GR-GGGYRLARPP 71 (83)
T ss_dssp C-BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEET-----ST-TSEEEESS-C
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEecC-----CC-CCceeecCCH
Confidence 36999999999999 9999999999999999998631 32 4678777543
No 260
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.77 E-value=0.12 Score=48.44 Aligned_cols=105 Identities=20% Similarity=0.164 Sum_probs=62.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhh--------C--------CCCeEEEeehhh--HHHhCCC----------CCC--CeE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSR--------Y--------PCIKGISFDLPH--VLANAPS----------FPG--VEH 254 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~--------~--------p~~~~~~~D~p~--~~~~a~~----------~~r--v~~ 254 (370)
.+..-+|+|+||.+|..+..+... + |.+.++.-|+|. --...+. ... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 456789999999999988775543 1 234666668752 1111110 122 445
Q ss_pred EeccCCC-CCCCC--CEEEecccccCCCh-------------------------------------hHHHHHHHHHHHhC
Q 017495 255 VGGDMFE-NVPRG--DAIFLKWMLHGWTD-------------------------------------EHCLKLLKNCWEAL 294 (370)
Q Consensus 255 ~~~D~~~-~~p~~--D~i~~~~vLh~~~d-------------------------------------~~~~~iL~~~~~~L 294 (370)
+.+.|.. -+|.+ |++++++.||.++. .+...+|+.=++-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 7788888 57776 99999999997642 11124455555678
Q ss_pred CCCcEEEEEeecCCC
Q 017495 295 PENGKVIIVESILPL 309 (370)
Q Consensus 295 ~pgG~lli~e~~~~~ 309 (370)
+|||++++.-...++
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 899999999887766
No 261
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=95.76 E-value=0.019 Score=39.94 Aligned_cols=51 Identities=16% Similarity=0.276 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
++.+..+|++.+++ +...+.+.++.|...|+|++.. +..|++ ...|.+|+.
T Consensus 17 ~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~-~~~d~R-~~~~~LT~~ 67 (68)
T PF13463_consen 17 GPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKER-DPHDKR-SKRYRLTPA 67 (68)
T ss_dssp S-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEE-ESSCTT-SEEEEE-HH
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCcCC-eeEEEeCCC
Confidence 48999999999999 9999999999999999997642 223332 256888775
No 262
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=95.74 E-value=0.011 Score=56.01 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=41.3
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE 261 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~ 261 (370)
.+|||++||+|.++..+++... +++++|. +.+++.++++ ++++++.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999988753 7899997 8888776643 468888888754
No 263
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.71 E-value=0.069 Score=55.33 Aligned_cols=111 Identities=16% Similarity=0.035 Sum_probs=71.0
Q ss_pred HHHHHHHhhcCC-CCCCeEEEEcCcccHHHHHHHhhC----C--------------------------------------
Q 017495 194 VMNKILDVYRGF-DGLKVLVDVGGGIGVTLGMITSRY----P-------------------------------------- 230 (370)
Q Consensus 194 ~~~~l~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~----p-------------------------------------- 230 (370)
.+..++.... | ++...++|-.||+|+++++.+... |
T Consensus 177 lAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 177 LAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 3445554443 6 557899999999999998866531 1
Q ss_pred CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCC---C-CCEEEecc--cccCCChhHHHHHHHHHHHhCC
Q 017495 231 CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVP---R-GDAIFLKW--MLHGWTDEHCLKLLKNCWEALP 295 (370)
Q Consensus 231 ~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p---~-~D~i~~~~--vLh~~~d~~~~~iL~~~~~~L~ 295 (370)
..+++++|+ +.+++.++.+ +++++..+|+.+ +.+ . .|+|+++- .-..-.+.+...+.+.+.+.++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 236899998 8888877653 468999999987 332 1 38888752 1111122344444444444444
Q ss_pred ---CCcEEEEEee
Q 017495 296 ---ENGKVIIVES 305 (370)
Q Consensus 296 ---pgG~lli~e~ 305 (370)
||+.+.+...
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 8888877554
No 264
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=95.65 E-value=0.016 Score=51.88 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=47.7
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
+.|++.+... ..|+++.|||+.+|+ +..-+.|+|..|+..|+++++ ++.|++++....
T Consensus 12 l~IL~~l~~~-------~~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~~---------~~~Y~lG~~~~~ 69 (248)
T TIGR02431 12 LAVIEAFGAE-------RPRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTSD---------GRLFWLTPRVLR 69 (248)
T ss_pred HHHHHHHhcC-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC---------CCEEEecHHHHH
Confidence 4577777654 248999999999999 999999999999999999852 367999876443
No 265
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=95.55 E-value=0.025 Score=49.00 Aligned_cols=64 Identities=19% Similarity=0.361 Sum_probs=48.9
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
|+..|... +|+|+.|||+++|+ ++..+++.|..|++.|+++.....+.-|+..-.|++|..+..
T Consensus 16 il~lL~~~--------g~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 16 ILELLKKS--------GPVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHhcc--------CCccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchh
Confidence 45566654 48999999999999 999999999999999999864222223454566888877653
No 266
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=95.53 E-value=0.017 Score=40.66 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=35.7
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
|.+.|... +.+|..+||+.+++ ++..++.+|..|+..|+|++.
T Consensus 5 i~~~l~~~--------~~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~~ 47 (69)
T PF09012_consen 5 IRDYLRER--------GRVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRKV 47 (69)
T ss_dssp HHHHHHHS---------SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEEE
T ss_pred HHHHHHHc--------CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 45667665 48999999999999 999999999999999999964
No 267
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.46 E-value=0.022 Score=43.25 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=30.7
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL 239 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~ 239 (370)
...-+...+. ..+....+|||||.|.+..-|.. .+.++.++|.
T Consensus 46 Li~LW~~~~~-~~~~~~FVDlGCGNGLLV~IL~~--EGy~G~GiD~ 88 (112)
T PF07757_consen 46 LIELWRDMYG-EQKFQGFVDLGCGNGLLVYILNS--EGYPGWGIDA 88 (112)
T ss_pred HHHHHhcccC-CCCCCceEEccCCchHHHHHHHh--CCCCcccccc
Confidence 3444444443 34677899999999988887776 5677888884
No 268
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=95.45 E-value=0.027 Score=40.56 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=38.4
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.+..+|+..+++ +...+.+.|+.|...|+++.. ++.|.+|+.+..+.
T Consensus 19 ~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~~~---------~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 19 GAKKTEIMYKANL----NYSTLKKYLKELEEKGLIKKK---------DGKYRLTEKGKEFL 66 (77)
T ss_dssp -B-HHHHHTTST------HHHHHHHHHHHHHTTSEEEE---------TTEEEE-HHHHHHH
T ss_pred CCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCeeCC---------CCEEEECccHHHHH
Confidence 7999999999999 999999999999999999742 58899999987544
No 269
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.39 E-value=0.086 Score=50.11 Aligned_cols=90 Identities=13% Similarity=0.147 Sum_probs=68.4
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCC-eEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCC---CC-CCEEEecccc
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCI-KGISFDL-PHVLANAPSF------PGVEHVGGDMFENV---PR-GDAIFLKWML 275 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~---p~-~D~i~~~~vL 275 (370)
..+|||+-||+|..+..++.+.++. +++..|. |..++.++++ .++.+..+|..... .. .|+|.+-- .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 3689999999999999999986554 6888898 8888776543 34778888887621 12 39998854 2
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
..+ ..+|..+.+.+++||.|.+.
T Consensus 124 -Gs~----~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 -GTP----APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -CCc----HHHHHHHHHhcccCCEEEEE
Confidence 212 36889999999999999997
No 270
>PRK11569 transcriptional repressor IclR; Provisional
Probab=95.34 E-value=0.027 Score=51.36 Aligned_cols=59 Identities=10% Similarity=0.139 Sum_probs=46.9
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
+.|++.|... +.++++.|||+.+|+ +..-+.|+|..|+..||+..+. + .+.|++++..-
T Consensus 31 l~IL~~l~~~-------~~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~~---~----~~~Y~lG~~l~ 89 (274)
T PRK11569 31 LKLLEWIAES-------NGSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQVG---E----LGHWAIGAHAF 89 (274)
T ss_pred HHHHHHHHhC-------CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---C----CCeEecCHHHH
Confidence 3456666653 247999999999999 9999999999999999998641 1 47899987643
No 271
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=95.23 E-value=0.093 Score=44.67 Aligned_cols=84 Identities=19% Similarity=0.267 Sum_probs=61.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC---------CCCeEEeccCCC-CC----------CCC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF---------PGVEHVGGDMFE-NV----------PRG 266 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~---------~rv~~~~~D~~~-~~----------p~~ 266 (370)
+...|+-+|||-=.....+....++++++-+|+|++++..++. .+++++..|+.+ .+ +..
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 4459999999999999999887788999999999998866542 236789999986 21 122
Q ss_pred -CEEEecccccCCChhHHHHHHHHH
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNC 290 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~ 290 (370)
-++++-.++.+++.+++..+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 677888899999999998888876
No 272
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.17 E-value=0.099 Score=50.70 Aligned_cols=127 Identities=20% Similarity=0.269 Sum_probs=82.9
Q ss_pred ChhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCC--CCeEEEEcCcccHHHHHHHhh----CCCCeEEEeeh-h
Q 017495 168 TQFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDG--LKVLVDVGGGIGVTLGMITSR----YPCIKGISFDL-P 240 (370)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-p 240 (370)
..|+.+++++-....|.+++ ...+.+..++.+. ...|+-+|+|-|-+..+..+. .-.++.++++. |
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 35666777776555555543 4466666553333 678999999999887765554 34567788886 7
Q ss_pred hHHHhCCC------CCCCeEEeccCCC-CCC-C-CCEEEecccccCCChhH-HHHHHHHHHHhCCCCcEEEE
Q 017495 241 HVLANAPS------FPGVEHVGGDMFE-NVP-R-GDAIFLKWMLHGWTDEH-CLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 241 ~~~~~a~~------~~rv~~~~~D~~~-~~p-~-~D~i~~~~vLh~~~d~~-~~~iL~~~~~~L~pgG~lli 302 (370)
.++-.... ..+|+++..||.+ .-| + .|++++ ..|--+.|.+ ...-|..+.+.|||+|.-+=
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 66544332 1689999999998 433 3 388765 3333333333 23668899999999986653
No 273
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.14 E-value=0.12 Score=48.19 Aligned_cols=96 Identities=21% Similarity=0.174 Sum_probs=75.4
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCC---CCCEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVP---RGDAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p---~~D~i~~~~vL 275 (370)
.+.+|||.=+|.|.++..+++.. ..+++.+|+ |..++..+++ .++..+.||..+-.+ .+|-|+|.+.-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 47899999999999999998864 334999998 9888766542 458899999988333 35999987543
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
....+|..+.+.+++||.+...+.+..+
T Consensus 267 ------~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 267 ------SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred ------cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 2357788888999999999998887654
No 274
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=95.09 E-value=0.034 Score=35.60 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=31.6
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+.+..+||+.+++ +...+.+.|+.|.+.|++..
T Consensus 8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~ 40 (48)
T smart00419 8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISR 40 (48)
T ss_pred ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 6899999999999 99999999999999999985
No 275
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=95.09 E-value=0.033 Score=50.23 Aligned_cols=58 Identities=7% Similarity=0.140 Sum_probs=46.7
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
+.|++.|... +++++.|||+.+|+ +..-+.|+|+.|+..||+.++. + ++.|++++..-
T Consensus 17 l~IL~~l~~~--------~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~~---~----~~~Y~lG~~~~ 74 (257)
T PRK15090 17 FGILQALGEE--------REIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQEG---E----SEKYSLTLKLF 74 (257)
T ss_pred HHHHHHhhcC--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---C----CCcEEecHHHH
Confidence 3456666554 37999999999999 9999999999999999998631 1 47899997653
No 276
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=94.97 E-value=0.087 Score=44.51 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=40.2
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
..|+++|... +++|.++||..+|+ +...++++|..|...|++...
T Consensus 25 ~~Vl~~L~~~--------g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~~ 69 (178)
T PRK06266 25 FEVLKALIKK--------GEVTDEEIAEQTGI----KLNTVRKILYKLYDARLADYK 69 (178)
T ss_pred hHHHHHHHHc--------CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 4488988875 38999999999999 999999999999999999953
No 277
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=94.95 E-value=0.041 Score=50.03 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=46.6
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
+.|++.|... +.++++.|||+.+|+ +..-+.|+|..|+..|||.++. . .+.|+++...
T Consensus 28 l~IL~~~~~~-------~~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~~---~----~~~Y~lG~~l 85 (271)
T PRK10163 28 IAILQYLEKS-------GGSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQDS---Q----LGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHhC-------CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---C----CCeEEecHHH
Confidence 3466677654 237999999999999 9999999999999999998641 1 4789998754
No 278
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=94.91 E-value=0.041 Score=49.22 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=47.8
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
+.|++.|... + .++++.|||+++|+ +..-+.|+|..|+..||++++ ++ +++|++++..-
T Consensus 7 l~iL~~l~~~-----~--~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d---~~----~g~Y~Lg~~~~ 65 (246)
T COG1414 7 LAILDLLAEG-----P--GGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQD---PE----DGRYRLGPRLL 65 (246)
T ss_pred HHHHHHHHhC-----C--CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEc---CC----CCcEeehHHHH
Confidence 5678888765 1 24679999999999 999999999999999999974 22 36899997643
No 279
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=94.85 E-value=0.046 Score=44.86 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
++.|+++||+..++ ++..|+++|..|...|+|+.. .|+ .+.|++.....
T Consensus 24 ~~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~-----rG~-~GGy~Lar~~~ 72 (150)
T COG1959 24 GPVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSV-----RGK-GGGYRLARPPE 72 (150)
T ss_pred CcccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEee-----cCC-CCCccCCCChH
Confidence 37999999999999 999999999999999999964 233 57888876543
No 280
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=94.81 E-value=0.017 Score=40.37 Aligned_cols=47 Identities=19% Similarity=0.103 Sum_probs=39.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.+..++..|-.. ++.|+.+||+.+|+ +...+.+.|+.|...|+++..
T Consensus 9 ~E~~vy~~Ll~~--------~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~ 55 (68)
T PF01978_consen 9 NEAKVYLALLKN--------GPATAEEIAEELGI----SRSTVYRALKSLEEKGLVERE 55 (68)
T ss_dssp HHHHHHHHHHHH--------CHEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 345566666433 38999999999999 999999999999999999974
No 281
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=94.78 E-value=0.063 Score=46.55 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=49.0
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
..|+..|... ++.|+.+||+.+++ ++..+++.|+.|...|+|+........|+....|.+|+.+..+
T Consensus 4 ~~IL~~L~~~--------~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~ 70 (203)
T TIGR02702 4 EDILSYLLKQ--------GQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQ 70 (203)
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhh
Confidence 3466777654 37999999999999 9999999999999999998641101233334457888776543
No 282
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=94.73 E-value=0.058 Score=44.99 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
+++|+++||+.+++ ++..+.++|..|...|+|... .|+ ++.|.+...
T Consensus 24 ~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~-----rG~-~GGy~Lar~ 70 (164)
T PRK10857 24 GPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSV-----RGP-GGGYLLGKD 70 (164)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC-----CCC-CCCeeccCC
Confidence 48999999999999 999999999999999999963 122 466887654
No 283
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=94.72 E-value=0.081 Score=36.54 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.++|..+||+.+|+ ++..+.+.|+.|...|++..
T Consensus 24 ~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~ 57 (67)
T cd00092 24 LPLTRQEIADYLGL----TRETVSRTLKELEEEGLISR 57 (67)
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 37999999999999 99999999999999999996
No 284
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.69 E-value=0.16 Score=45.14 Aligned_cols=101 Identities=17% Similarity=0.102 Sum_probs=66.8
Q ss_pred CC-CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC------------CCCeEEeccCCCC------CCC
Q 017495 205 FD-GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF------------PGVEHVGGDMFEN------VPR 265 (370)
Q Consensus 205 ~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~------------~rv~~~~~D~~~~------~p~ 265 (370)
++ ...+||++|+|+|..++..+. .....++.-|.|.+++..... ..+.+...+-..+ .|.
T Consensus 83 ~~~~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 83 FKTKYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred ccccceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence 44 467899999999955554444 467788888876665543221 1344444444331 233
Q ss_pred -CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 266 -GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 266 -~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.|+|+.+.++++-. .-..++..++..|..++.+++.-....
T Consensus 162 ~~DlilasDvvy~~~--~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 162 PFDLILASDVVYEEE--SFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cccEEEEeeeeecCC--cchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 59999999998733 346788888899999996666555544
No 285
>PRK11050 manganese transport regulator MntR; Provisional
Probab=94.66 E-value=0.28 Score=40.40 Aligned_cols=57 Identities=25% Similarity=0.195 Sum_probs=44.9
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
|+..+..+ ++.+..+||+.+++ ++..+.++++.|...|+|.... ...+.+|+.+..+
T Consensus 42 I~~~l~~~--------~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~~--------~~~v~LT~~G~~l 98 (152)
T PRK11050 42 IADLIAEV--------GEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMRP--------YRGVFLTPEGEKL 98 (152)
T ss_pred HHHHHHhc--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec--------CCceEECchHHHH
Confidence 55566654 37999999999999 9999999999999999998521 2457777766544
No 286
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=94.53 E-value=0.06 Score=48.74 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=48.6
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.|++.|... ++++++.|||+.+|+ +..-+.|+|+.|+..|+++++. . ++.|++++....+.
T Consensus 14 l~iL~~l~~~-------~~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~~---~----~~~Y~Lg~~~~~l~ 75 (263)
T PRK09834 14 LMVLRALNRL-------DGGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRSA---S----DDSFRLTLKVRQLS 75 (263)
T ss_pred HHHHHHHHhc-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEec---C----CCcEEEcHHHHHHH
Confidence 4566777654 136999999999999 9999999999999999999642 1 46799997654333
No 287
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=94.47 E-value=0.091 Score=48.28 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=52.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE 261 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~ 261 (370)
..++++.+. ..+...++|.-+|.|+.+..+++.+|+.+++++|. |.+++.+++. .|+.++.+++.+
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 456676665 55677999999999999999999988889999998 8888776542 366776666643
No 288
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=94.47 E-value=0.099 Score=40.93 Aligned_cols=69 Identities=10% Similarity=0.106 Sum_probs=52.0
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.+..++..|... +++|..+||+.+++ +...+.+.++-|...|+|+... ++.|.+ .-.+.+|+.+..
T Consensus 29 ~q~~iL~~l~~~--------~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~-~~~D~R-~~~v~LT~~G~~ 94 (118)
T TIGR02337 29 QQWRILRILAEQ--------GSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLK-ASNDQR-RVYISLTPKGQA 94 (118)
T ss_pred HHHHHHHHHHHc--------CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHhHHH
Confidence 444577777765 37999999999999 9899999999999999999742 222221 235888888875
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 95 ~~~ 97 (118)
T TIGR02337 95 LYA 97 (118)
T ss_pred HHH
Confidence 554
No 289
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=94.44 E-value=0.046 Score=37.37 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=36.4
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.|++.|... ++|++..|||+.+|+ +....+++|..|+..|.++..
T Consensus 4 ~Il~~i~~~-------~~p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~~ 48 (62)
T PF04703_consen 4 KILEYIKEQ-------NGPLKTREIADALGL----SIYQARYYLEKLEKEGKVERS 48 (62)
T ss_dssp CHHHHHHHH-------TS-EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEEE
T ss_pred HHHHHHHHc-------CCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 456666662 148999999999999 999999999999999999864
No 290
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=94.27 E-value=0.035 Score=47.27 Aligned_cols=95 Identities=20% Similarity=0.097 Sum_probs=61.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC------CCCC-CEEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN------VPRG-DAIFL 271 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~------~p~~-D~i~~ 271 (370)
...++||+=||+|.++.+.+.+. -.+++.+|. +..+...+++ +++.++..|.... .... |+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 46899999999999999888764 347888887 6666655542 4588888997652 1233 99988
Q ss_pred cccccCCChhHHHHHHHHHH--HhCCCCcEEEEEe
Q 017495 272 KWMLHGWTDEHCLKLLKNCW--EALPENGKVIIVE 304 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~--~~L~pgG~lli~e 304 (370)
-==... .. ....+|..+. ..|+++|.+++-.
T Consensus 121 DPPY~~-~~-~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 121 DPPYAK-GL-YYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp --STTS-CH-HHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCCccc-ch-HHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 422211 11 1356777776 7888888666533
No 291
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=94.27 E-value=0.12 Score=38.74 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=49.0
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
++.++..|... ++.+..+|++.+++ ++..+.+.|+-|+..|+|+... + ..++....|.+|+.+..+
T Consensus 12 ~~~il~~l~~~--------~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~~-~-~~~~r~~~~~lT~~g~~~ 77 (101)
T smart00347 12 QFLVLRILYEE--------GPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRLP-S-PEDRRSVLVSLTEEGREL 77 (101)
T ss_pred HHHHHHHHHHc--------CCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEecC-C-CCCCCeEEEEECHhHHHH
Confidence 45667777665 37999999999999 9999999999999999998642 1 111123457777776544
Q ss_pred h
Q 017495 121 I 121 (370)
Q Consensus 121 ~ 121 (370)
.
T Consensus 78 ~ 78 (101)
T smart00347 78 I 78 (101)
T ss_pred H
Confidence 4
No 292
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.20 E-value=0.21 Score=48.43 Aligned_cols=131 Identities=18% Similarity=0.195 Sum_probs=82.1
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-h----hHHHhCCCCCCCeEEeccCCCC---CCCC-CEEEecccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-P----HVLANAPSFPGVEHVGGDMFEN---VPRG-DAIFLKWML 275 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p----~~~~~a~~~~rv~~~~~D~~~~---~p~~-D~i~~~~vL 275 (370)
....+.|+|..+|.|+|+.+|.+. | +- +... | ..+...-.+ ...=+-.|..++ +|.. |++...++|
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~-VW--VMNVVP~~~~ntL~vIydR-GLIG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P-VW--VMNVVPVSGPNTLPVIYDR-GLIGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C-ce--EEEecccCCCCcchhhhhc-ccchhccchhhccCCCCcchhheehhhhh
Confidence 456789999999999999999763 3 22 2221 2 211111111 122223344443 4555 999999999
Q ss_pred cCCChh-HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcc
Q 017495 276 HGWTDE-HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGL 354 (370)
Q Consensus 276 h~~~d~-~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v 354 (370)
..+.+. +...+|-++-|.|+|||.++|.|... ...+++.+++.-.++..
T Consensus 438 s~~~~rC~~~~illEmDRILRP~G~~iiRD~~~------------------------------vl~~v~~i~~~lrW~~~ 487 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD------------------------------VLEKVKKIAKSLRWEVR 487 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCCCceEEEeccHH------------------------------HHHHHHHHHHhCcceEE
Confidence 887654 45689999999999999999966431 13356666666666644
Q ss_pred eEEecCC---CeeEEEEeC
Q 017495 355 EIVCCAY---NSWVMEFHK 370 (370)
Q Consensus 355 ~~~~~~~---~~~~~e~~k 370 (370)
.+....+ ..-|+.|+|
T Consensus 488 ~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 488 IHDTEDGPDGPEKILICQK 506 (506)
T ss_pred EEecCCCCCCCceEEEEEC
Confidence 3333222 456787776
No 293
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=94.15 E-value=0.1 Score=38.69 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=47.1
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHC-CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhhc
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARL-PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
|+..|..+ +....||.+.+ ++ ++..|.+-|+.|...|++++.... . .+..-.|++|+.++.+..
T Consensus 10 IL~~l~~g---------~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~~-~-~p~~v~Y~LT~~G~~l~~ 74 (90)
T PF01638_consen 10 ILRALFQG---------PMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVYP-E-VPPRVEYSLTEKGKELLP 74 (90)
T ss_dssp HHHHHTTS---------SEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEES-S-SSSEEEEEE-HHHHHHHH
T ss_pred HHHHHHhC---------CCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhccccc-C-CCCCCccCCCcCHHHHHH
Confidence 45556655 89999999999 89 999999999999999999874211 1 111346999999886663
No 294
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=94.00 E-value=0.046 Score=37.21 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=38.1
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+..++..|... + +.++|+.+||+.+++ ++..+.+.++.|+..|+|+..
T Consensus 7 q~~vL~~l~~~-----~-~~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~ 54 (62)
T PF12802_consen 7 QFRVLMALARH-----P-GEELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERE 54 (62)
T ss_dssp HHHHHHHHHHS-----T-TSGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHC-----C-CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 34556666665 1 113899999999999 999999999999999999974
No 295
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=93.93 E-value=0.068 Score=35.25 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHH
Q 017495 32 LPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLL 89 (370)
Q Consensus 32 ~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L 89 (370)
.-.+|.+|.+.|-||. +. ..|.+|||+.+|+ ++..+...||-.
T Consensus 5 Q~e~L~~A~~~GYfd~-PR----------~~tl~elA~~lgi----s~st~~~~LRra 47 (53)
T PF04967_consen 5 QREILKAAYELGYFDV-PR----------RITLEELAEELGI----SKSTVSEHLRRA 47 (53)
T ss_pred HHHHHHHHHHcCCCCC-CC----------cCCHHHHHHHhCC----CHHHHHHHHHHH
Confidence 3468999999999998 43 3799999999999 888888888754
No 296
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.91 E-value=0.67 Score=44.86 Aligned_cols=101 Identities=19% Similarity=0.167 Sum_probs=71.9
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhC-----CCCCCCeEEeccCCC-CCCCC--CEEEecccccCCC
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANA-----PSFPGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWT 279 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a-----~~~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~ 279 (370)
-+++-+|||...+...+-+. ..-.++.+|. +.+++.. +.+....+...|+.. .++.. |+|+....|+++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 39999999999888877664 2234555565 4344332 233568889999988 66643 9999999998853
Q ss_pred hhH--------HHHHHHHHHHhCCCCcEEEEEeec--CCCC
Q 017495 280 DEH--------CLKLLKNCWEALPENGKVIIVESI--LPLV 310 (370)
Q Consensus 280 d~~--------~~~iL~~~~~~L~pgG~lli~e~~--~~~~ 310 (370)
.++ +...+..++++|+|||+++.+... .+..
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~ 169 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQG 169 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCC
Confidence 322 235689999999999999998884 4544
No 297
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=93.88 E-value=0.11 Score=47.62 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=47.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMF 260 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~ 260 (370)
+.++++.+. ..+...++|.--|.|+.+.++++++|+.+++++|. |.+++.+++. +|+.++.++|.
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 456777776 66778999999999999999999999999999998 9888766542 56777666654
No 298
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=93.81 E-value=0.12 Score=44.60 Aligned_cols=57 Identities=14% Similarity=0.234 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 30 AVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 30 ~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+-..++|.+.+++.+++.|... +|+.+.|||+++|+ ++.-+..-+..|+.+|+++..
T Consensus 14 ~dv~kalaS~vRv~Il~lL~~k--------~plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT~ 70 (308)
T COG4189 14 LDVLKALASKVRVAILQLLHRK--------GPLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRTE 70 (308)
T ss_pred chHHHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHhCC----chhhhhhhHHHHHhcCceeee
Confidence 4456788999999999999987 48999999999999 999999999999999999964
No 299
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=93.78 E-value=0.087 Score=48.04 Aligned_cols=98 Identities=17% Similarity=0.171 Sum_probs=67.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCCCCC-----CC-CEEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFENVP-----RG-DAIFL 271 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~~~p-----~~-D~i~~ 271 (370)
...+|||+=|=||.++.+.+.. .-.+++.+|. ...++.++++ .+++++..|+++... .. |+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999987652 3347899998 7777766542 578999999987221 12 99988
Q ss_pred c---ccccCCC-hhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 272 K---WMLHGWT-DEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 272 ~---~vLh~~~-d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
- +.=..+. ..+-.++++.+.+.|+|||.|+++..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 1 1101111 12445789999999999999887544
No 300
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=93.76 E-value=0.12 Score=40.53 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=39.2
Q ss_pred hcChHHHHh-hcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccc
Q 017495 41 ELNVIDIIS-AASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSL 99 (370)
Q Consensus 41 ~lglfd~L~-~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 99 (370)
+..+|.+|- .. +|.|+++||+.++. +...+.+-|+-|...|++.+.+
T Consensus 29 Dv~v~~~LL~~~--------~~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~Rek 76 (126)
T COG3355 29 DVEVYKALLEEN--------GPLTVDELAEILNR----SRSTVYRSLQNLLEAGLVEREK 76 (126)
T ss_pred HHHHHHHHHhhc--------CCcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCeeeee
Confidence 445566654 33 49999999999999 9999999999999999999753
No 301
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=93.73 E-value=0.082 Score=42.58 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
.++|.++||+.+++ ++..++++|..|...|++... . |+ .+.|.++...
T Consensus 24 ~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~--~---G~-~Ggy~l~~~~ 71 (135)
T TIGR02010 24 GPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSV--R---GP-GGGYQLGRPA 71 (135)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE--e---CC-CCCEeccCCH
Confidence 38999999999999 999999999999999999853 1 21 3568776543
No 302
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=93.70 E-value=1 Score=42.63 Aligned_cols=104 Identities=17% Similarity=0.116 Sum_probs=70.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCC--CeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC---CCCC---CCEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPC--IKGISFDL-PHVLANAPSF------PGVEHVGGDMFE---NVPR---GDAI 269 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~---~~p~---~D~i 269 (370)
..++.+|||..++.|.=+.++++..++ ..++.+|. +.-+...+.+ .++..+..|... ..+. .|.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 567799999999999999999999876 45588886 5444433321 335666666543 1221 3666
Q ss_pred Ee------c-------ccccCCChhHH-------HHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 270 FL------K-------WMLHGWTDEHC-------LKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 270 ~~------~-------~vLh~~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
++ . .+...+...+. .++|..+.+.|||||.|+-......
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 55 1 23344444432 3789999999999999998877664
No 303
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.68 E-value=0.089 Score=50.94 Aligned_cols=100 Identities=18% Similarity=0.172 Sum_probs=67.5
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC--C-CC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE--N-VP 264 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~--~-~p 264 (370)
+....+.+. ..+..+++|+=||.|.++..|++ ...++++++. ++.++.++++ ++++|+.+|..+ + +.
T Consensus 282 ~~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~--~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~ 358 (432)
T COG2265 282 YETALEWLE-LAGGERVLDLYCGVGTFGLPLAK--RVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW 358 (432)
T ss_pred HHHHHHHHh-hcCCCEEEEeccCCChhhhhhcc--cCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc
Confidence 334444444 55678999999999999999996 4457888887 8888777653 569999999887 2 21
Q ss_pred --CC-CEEEecccccCCChhHHH-HHHHHHHHhCCCCcEEEEE
Q 017495 265 --RG-DAIFLKWMLHGWTDEHCL-KLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 265 --~~-D~i~~~~vLh~~~d~~~~-~iL~~~~~~L~pgG~lli~ 303 (370)
.. |+|+. +-|..-+. .+++.+ ..++|-..++|.
T Consensus 359 ~~~~~d~Vvv-----DPPR~G~~~~~lk~l-~~~~p~~IvYVS 395 (432)
T COG2265 359 EGYKPDVVVV-----DPPRAGADREVLKQL-AKLKPKRIVYVS 395 (432)
T ss_pred ccCCCCEEEE-----CCCCCCCCHHHHHHH-HhcCCCcEEEEe
Confidence 12 88876 23333333 445544 445776777773
No 304
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=93.62 E-value=0.17 Score=41.15 Aligned_cols=50 Identities=22% Similarity=0.136 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
++.++++||+.+++ ++..+.+.|+.|...|+|.... .+.|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~~~--------~~~i~LT~~G~~~a 70 (142)
T PRK03902 21 GYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIYEK--------YRGLVLTPKGKKIG 70 (142)
T ss_pred CCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEEec--------CceEEECHHHHHHH
Confidence 47899999999999 9999999999999999998521 36689998886543
No 305
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=93.56 E-value=0.57 Score=38.02 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=48.0
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
..++..|... +++|..+||+.+++ ++..+.++++-|+..|+|+... +++|++ .....+|+.+..+.
T Consensus 43 ~~vL~~l~~~--------~~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~-~~~DrR-~~~l~LT~~G~~~~ 108 (144)
T PRK11512 43 FKVLCSIRCA--------ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP-NPNDKR-GVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc-CcccCC-eeEeEEChhHHHHH
Confidence 3456666554 37999999999999 9999999999999999999742 223322 23356677666544
No 306
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=93.49 E-value=0.11 Score=42.90 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
.+++..+||+..++ ++..|+++|..|...|+|+.. .|+ .+.|.+....
T Consensus 23 ~~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~-----rG~-~GGy~La~~p 70 (153)
T PRK11920 23 KLSRIPEIARAYGV----SELFLFKILQPLVEAGLVETV-----RGR-NGGVRLGRPA 70 (153)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee-----cCC-CCCeeecCCH
Confidence 37899999999999 999999999999999999964 233 4778876543
No 307
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=93.43 E-value=0.07 Score=31.10 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=26.3
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCce
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDIL 95 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l 95 (370)
|+|-.|||+.+|+ .+.-++|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence 5889999999999 999999999999999875
No 308
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=93.40 E-value=0.15 Score=39.90 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=45.3
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+.+-+=-.+.|+..+++. +|.|+.|+|+..|- +...+.|-|+.|+..|++...
T Consensus 59 a~vLsp~nleLl~~Ia~~--------~P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe 111 (144)
T COG4190 59 ARVLSPRNLELLELIAQE--------EPASINELAELVGR----DVKNVHRTLSTLADLGLIFFE 111 (144)
T ss_pred HHHhChhHHHHHHHHHhc--------CcccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence 344445667788888876 59999999999999 999999999999999999973
No 309
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.38 E-value=0.19 Score=47.10 Aligned_cols=109 Identities=17% Similarity=0.349 Sum_probs=74.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh---hh-HHHhCC------------CCCCCeEEeccCC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL---PH-VLANAP------------SFPGVEHVGGDMF 260 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~---p~-~~~~a~------------~~~rv~~~~~D~~ 260 (370)
.+.+.+. ..+.....|+|+|.|+....++......+-+++.+ |. +..... +...++.+.+++.
T Consensus 183 si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 183 SIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 4444554 66778999999999999988776544444444442 22 221111 1245888999998
Q ss_pred CC------CCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 261 EN------VPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 261 ~~------~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
.+ ++++++|+++++.. ++ +...=+.++..-+++|-+++-.++..+.
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~F--dp-~L~lr~~eil~~ck~gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAF--DP-ELKLRSKEILQKCKDGTRIISSKPLVPR 313 (419)
T ss_pred CHHHHHHHhhcceEEEEecccC--CH-HHHHhhHHHHhhCCCcceEecccccccc
Confidence 73 34569999999875 34 3344455899999999999999988873
No 310
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=93.36 E-value=0.15 Score=45.40 Aligned_cols=68 Identities=9% Similarity=0.154 Sum_probs=59.8
Q ss_pred HHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCcccccee
Q 017495 33 PMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYG 112 (370)
Q Consensus 33 ~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~ 112 (370)
-.++....|.+|+-.|.++ |+|.+||-..+++ ++..+..-++-|...|++.+. ++.|+
T Consensus 7 ~~if~SekRk~lLllL~eg---------Pkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~~---------~~~Y~ 64 (260)
T COG4742 7 DLLFLSEKRKDLLLLLKEG---------PKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQE---------GDRYS 64 (260)
T ss_pred HHHHccHHHHHHHHHHHhC---------CCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEec---------CCEEE
Confidence 3456677889999999997 9999999999999 999999999999999999963 58999
Q ss_pred cchhhhhhhc
Q 017495 113 AAPICKFLIK 122 (370)
Q Consensus 113 ~~~~~~~l~~ 122 (370)
+|..+..++.
T Consensus 65 LS~~G~iiv~ 74 (260)
T COG4742 65 LSSLGKIIVE 74 (260)
T ss_pred ecchHHHHHH
Confidence 9999987764
No 311
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=93.29 E-value=0.14 Score=34.42 Aligned_cols=42 Identities=12% Similarity=0.310 Sum_probs=37.8
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
|++.|... +.+++++||+.+++ ++.-++|=|..|+..|++..
T Consensus 5 Il~~l~~~--------~~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r 46 (57)
T PF08220_consen 5 ILELLKEK--------GKVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKR 46 (57)
T ss_pred HHHHHHHc--------CCEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 56677765 48999999999999 99999999999999999986
No 312
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=93.29 E-value=0.13 Score=44.18 Aligned_cols=51 Identities=29% Similarity=0.397 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 59 GELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 59 ~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
+.+.|++|+|+++|+ +.--.||.|.+|++.|+++..-.-|.-|+....|..
T Consensus 171 ~~~~Taeela~~~gi----SRvTaRRYLeyl~~~~~l~a~i~yG~vGRP~r~Y~~ 221 (224)
T COG4565 171 DQELTAEELAQALGI----SRVTARRYLEYLVSNGILEAEIHYGKVGRPERRYRL 221 (224)
T ss_pred CCccCHHHHHHHhCc----cHHHHHHHHHHHHhcCeeeEEeeccccCCcceeeec
Confidence 358999999999999 999999999999999999864333444444555544
No 313
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=93.26 E-value=0.12 Score=41.34 Aligned_cols=48 Identities=21% Similarity=0.190 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
+++|.++||+.+++ ++..++++|+.|...|+|.... |+ ++.|.++...
T Consensus 24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~~-----g~-~ggy~l~~~~ 71 (132)
T TIGR00738 24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESVR-----GP-GGGYRLARPP 71 (132)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecc-----CC-CCCccCCCCH
Confidence 38999999999999 9999999999999999998521 11 3467776443
No 314
>PRK06474 hypothetical protein; Provisional
Probab=93.11 E-value=0.17 Score=42.78 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=53.7
Q ss_pred HHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccce
Q 017495 33 PMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL-PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVY 111 (370)
Q Consensus 33 ~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y 111 (370)
..+|.--.++.|++.|... + .+.|+.+|++.+ ++ +..-+.|.|+.|+..|+|+........|..+..|
T Consensus 5 ~~~La~p~R~~Il~~L~~~-----~--~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y 73 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRN-----K--EGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYY 73 (178)
T ss_pred HHhhCCHHHHHHHHHHHhC-----C--CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEE
Confidence 3456667788899999775 1 259999999999 67 8888999999999999999753111011224567
Q ss_pred ecchhh
Q 017495 112 GAAPIC 117 (370)
Q Consensus 112 ~~~~~~ 117 (370)
+.+...
T Consensus 74 ~~~~~~ 79 (178)
T PRK06474 74 AINEED 79 (178)
T ss_pred Eeccce
Confidence 777654
No 315
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=92.87 E-value=0.13 Score=49.80 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=44.6
Q ss_pred CCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC
Q 017495 204 GFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE 261 (370)
Q Consensus 204 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~ 261 (370)
+.+....++|+-||||.++..+++. -.+++++.+ |+.++.|+.+ .+.+|++|-.++
T Consensus 380 ~l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 380 GLPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 3677899999999999999999884 457888876 8888877653 578999994444
No 316
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.84 E-value=0.82 Score=43.14 Aligned_cols=108 Identities=16% Similarity=0.096 Sum_probs=71.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCC---------------------------------------eEE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCI---------------------------------------KGI 235 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~---------------------------------------~~~ 235 (370)
+..++..- +|.+...++|-=||+|+++++.+...+++ .++
T Consensus 180 AaAil~la-gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 180 AAAILLLA-GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHHc-CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 34444433 48777899999999999999988777532 266
Q ss_pred Eeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCC-C-CCEEEec--ccccCCChhH-H----HHHHHHHHHhCCCC
Q 017495 236 SFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVP-R-GDAIFLK--WMLHGWTDEH-C----LKLLKNCWEALPEN 297 (370)
Q Consensus 236 ~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p-~-~D~i~~~--~vLh~~~d~~-~----~~iL~~~~~~L~pg 297 (370)
++|+ +.+++-|+.+ +.|.|.++|+.. ..+ + .|+|+++ +-.- +.++. + ..+.+.+++.++.-
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhcCC
Confidence 8998 8888877753 569999999987 333 3 3888873 1211 12221 1 24455666666666
Q ss_pred cEEEEEe
Q 017495 298 GKVIIVE 304 (370)
Q Consensus 298 G~lli~e 304 (370)
++.++..
T Consensus 338 s~~v~tt 344 (381)
T COG0116 338 SRYVFTT 344 (381)
T ss_pred ceEEEEc
Confidence 6777643
No 317
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.80 E-value=0.57 Score=37.78 Aligned_cols=106 Identities=18% Similarity=0.250 Sum_probs=68.5
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~ 266 (370)
+.+++.+. ..+..+.+|+|+|.|....+.++.. -...+++++ |..+...+-+ .+++|...|+++ +.-+.
T Consensus 62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 34555555 4556899999999999888777643 356788887 6666554321 467888888887 55443
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
.++++. + +.-...+-.+++.-|+.+.+++-.-+-+|.
T Consensus 140 ~~vviFg-a-----es~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 140 RNVVIFG-A-----ESVMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred ceEEEee-h-----HHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 333321 1 112234455677788899999987776654
No 318
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=92.75 E-value=0.23 Score=32.16 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=31.7
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+.++.+|++.+++ ++..+.+.|..|...|++..
T Consensus 14 ~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~ 46 (53)
T smart00420 14 KVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTR 46 (53)
T ss_pred CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 7999999999999 99999999999999999985
No 319
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=92.60 E-value=0.097 Score=35.25 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=37.7
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
++.++..|... ++++..+||+.+++ ++..+.++++.|+..|+++..
T Consensus 5 q~~iL~~l~~~--------~~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~ 50 (59)
T PF01047_consen 5 QFRILRILYEN--------GGITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERE 50 (59)
T ss_dssp HHHHHHHHHHH--------SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEec
Confidence 33455556655 37999999999999 999999999999999999974
No 320
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=92.57 E-value=0.16 Score=41.13 Aligned_cols=46 Identities=9% Similarity=0.107 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecch
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAP 115 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~ 115 (370)
.+.+..+||+.+++ ++..+++.|..|...|+++.. .|+ .+.|.+..
T Consensus 24 ~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~-----~G~-~GG~~l~~ 69 (141)
T PRK11014 24 RMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAV-----RGK-NGGIRLGK 69 (141)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEe-----cCC-CCCeeecC
Confidence 47899999999999 999999999999999999963 232 35676653
No 321
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=92.48 E-value=0.18 Score=38.68 Aligned_cols=46 Identities=11% Similarity=0.270 Sum_probs=40.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..|+..|... ++.|..+||+.+|+ ++..+++.++.|...|++..
T Consensus 4 ~D~~il~~L~~~--------~~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~~ 49 (108)
T smart00344 4 IDRKILEELQKD--------ARISLAELAKKVGL----SPSTVHNRVKRLEEEGVIKG 49 (108)
T ss_pred HHHHHHHHHHHh--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeec
Confidence 456788888775 37999999999999 99999999999999999983
No 322
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=92.44 E-value=0.28 Score=44.31 Aligned_cols=99 Identities=19% Similarity=0.260 Sum_probs=68.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCe-EEEeeh-hhHHHhCCCC----------CCCeEEeccCCC---CCCCC--C
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIK-GISFDL-PHVLANAPSF----------PGVEHVGGDMFE---NVPRG--D 267 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~~~~a~~~----------~rv~~~~~D~~~---~~p~~--D 267 (370)
.+.+.++|-||+|.|.+++...+. +.+. +..+|. ..+++..+++ .+|.+..||-+. ..+++ |
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 456789999999999999988886 6653 566676 5566654432 579999998876 33343 8
Q ss_pred EEEecccccCCChhHH----HHHHHHHHHhCCCCcEEEEEeec
Q 017495 268 AIFLKWMLHGWTDEHC----LKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~----~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+|+.-.- +.--+.+ ..+...+.++|||||++++..-+
T Consensus 198 Vii~dss--dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 198 VIITDSS--DPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred EEEEecC--CccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 8876321 1111122 35677788999999999987643
No 323
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=92.35 E-value=0.31 Score=40.16 Aligned_cols=51 Identities=18% Similarity=0.118 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhhc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
++....+||+.+++ +|.-+..+++-|...|++.+.+ .+.+.+|+.++.+..
T Consensus 23 ~~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~~~--------y~gi~LT~~G~~~a~ 73 (154)
T COG1321 23 GFARTKDIAERLKV----SPPSVTEMLKRLERLGLVEYEP--------YGGVTLTEKGREKAK 73 (154)
T ss_pred CcccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEEec--------CCCeEEChhhHHHHH
Confidence 48999999999999 9999999999999999999842 477999988875553
No 324
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=92.34 E-value=0.2 Score=34.10 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
++++..+||+.+++ .+.-+..+++-|...|+++..
T Consensus 21 ~~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~ 55 (60)
T PF01325_consen 21 GPVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE 55 (60)
T ss_dssp SSBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CCccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence 48999999999999 999999999999999999963
No 325
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=92.31 E-value=1.5 Score=35.44 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=42.1
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhhc
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
+.|..+||+.+++ ++..+.++++-|+..|+|+..+ +++|.+ .-...+|+.++.+..
T Consensus 46 ~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 46 EQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQT-CASDRR-AKRIKLTEKAEPLIS 101 (144)
T ss_pred CCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeec-CCCCcC-eeeeEEChHHHHHHH
Confidence 5899999999999 9999999999999999999742 223321 233567777765443
No 326
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=91.86 E-value=0.42 Score=36.85 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
++.+..+||+.+++ ++..+.++++.|+..|+|.+.+ .++|.+ .-...+|+.+..+.
T Consensus 42 ~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~~-~~~D~R-~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 42 GKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKER-SEDDER-KVIISINKEQRSKI 97 (109)
T ss_pred CcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeccC-CcccCC-eEEEEECHHHHHHH
Confidence 47999999999999 9999999999999999999742 223221 12255666665443
No 327
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=91.77 E-value=0.23 Score=34.75 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=38.1
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
++.++..|.++ +.+..+||+.+++ +...+++.++.|.+.|+...
T Consensus 2 ~~~il~~L~~~---------~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~ 45 (69)
T TIGR00122 2 PLRLLALLADN---------PFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVL 45 (69)
T ss_pred hHHHHHHHHcC---------CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence 34567778875 7899999999999 99999999999999999654
No 328
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=91.72 E-value=0.23 Score=39.65 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
++.++.+||+++++ ++..+.++|+.|...|++..
T Consensus 24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~ 57 (130)
T TIGR02944 24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTS 57 (130)
T ss_pred CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEe
Confidence 48999999999999 99999999999999999985
No 329
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=91.63 E-value=0.36 Score=40.00 Aligned_cols=45 Identities=11% Similarity=-0.009 Sum_probs=39.1
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
..|+++|-.. +.+|-++||+.+|+ +..-++++|..|...|++...
T Consensus 17 v~Vl~aL~~~--------~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~~ 61 (158)
T TIGR00373 17 GLVLFSLGIK--------GEFTDEEISLELGI----KLNEVRKALYALYDAGLADYK 61 (158)
T ss_pred HHHHHHHhcc--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceee
Confidence 4577887754 38999999999999 999999999999999999753
No 330
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=91.30 E-value=0.31 Score=32.50 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=31.4
Q ss_pred CCC-CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 60 ELL-SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 60 ~~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
..+ |..+||+.+++ +...+++.|+.|...|++..
T Consensus 18 ~~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~ 52 (60)
T smart00345 18 DKLPSERELAAQLGV----SRTTVREALSRLEAEGLVQR 52 (60)
T ss_pred CcCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 356 89999999999 99999999999999999985
No 331
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.30 E-value=0.59 Score=40.65 Aligned_cols=94 Identities=22% Similarity=0.319 Sum_probs=66.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC----C-C-C---eEEEeehhhHHHhCCCCCCCeEEeccCCCC---------CC--
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY----P-C-I---KGISFDLPHVLANAPSFPGVEHVGGDMFEN---------VP-- 264 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~----p-~-~---~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~---------~p-- 264 (370)
+.+..|++|+....|.++.-|.++. + . . +++.+|+..|. ..+.|.-..+|+..+ +.
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----PI~GV~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----PIEGVIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----ccCceEEeecccCCHhHHHHHHHHhCCC
Confidence 4567899999999999999888874 2 1 1 37888984442 225688889998863 11
Q ss_pred CCCEEEec-----ccccCCChh----HHHHHHHHHHHhCCCCcEEEE
Q 017495 265 RGDAIFLK-----WMLHGWTDE----HCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 265 ~~D~i~~~-----~vLh~~~d~----~~~~iL~~~~~~L~pgG~lli 302 (370)
.+|+|++- --||++++= -....|.-...+|+|||.++-
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 23999984 357775532 234667777889999999875
No 332
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=91.24 E-value=0.38 Score=32.47 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=32.0
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+.|..+|++.+++ +...+.+.|+.|...|++...
T Consensus 10 ~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~ 43 (66)
T smart00418 10 ELCVCELAEILGL----SQSTVSHHLKKLREAGLVESR 43 (66)
T ss_pred CccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence 7999999999999 999999999999999999953
No 333
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=91.21 E-value=0.18 Score=47.62 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=41.9
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDM 259 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~ 259 (370)
+..+++.++ ..+. .|||+=||.|.++..|++.+ -++++++. +.+++.|+.+ ++++|+.++.
T Consensus 186 ~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 186 YEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 444555554 4334 89999999999999999855 47888887 8888777642 5788887664
No 334
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=91.16 E-value=4.7 Score=35.61 Aligned_cols=122 Identities=19% Similarity=0.066 Sum_probs=65.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCC---C--CEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPR---G--DAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~---~--D~i~~~~vL 275 (370)
.+++||=||=..- .+.+++-..+..+++++|+ ..+++..++. -.|+.+..|+..+.|+ + |+++.-=.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 4689999995544 4445555566678999997 6666544321 2499999999998875 2 99887322
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCH---HHHHHHHHhCCCC
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSK---KEYEALAKNSGFS 352 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~---~e~~~ll~~aGf~ 352 (370)
++.+-...+|.+..++||.-|.....-....+ .+. -++++.+.+.||.
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~---------------------------~s~~~~~~~Q~~l~~~gl~ 172 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKE---------------------------ASPDKWLEVQRFLLEMGLV 172 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT-----------------------------HHHHHHHHHHHHTS--E
T ss_pred --CCHHHHHHHHHHHHHHhCCCCceEEEEEecCc---------------------------CcHHHHHHHHHHHHHCCcC
Confidence 33456779999999999966633332222111 111 2457777788888
Q ss_pred cceEEec
Q 017495 353 GLEIVCC 359 (370)
Q Consensus 353 ~v~~~~~ 359 (370)
+..+++-
T Consensus 173 i~dii~~ 179 (243)
T PF01861_consen 173 ITDIIPD 179 (243)
T ss_dssp EEEEEEE
T ss_pred HHHHHhh
Confidence 8777764
No 335
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=91.16 E-value=0.39 Score=34.21 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=37.0
Q ss_pred HHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 45 IDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 45 fd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
=|.|... +-.++.+||..+++ +++.++.+|..++..|-+++.
T Consensus 8 Rd~l~~~--------gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkverv 49 (78)
T PRK15431 8 RDLLALR--------GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_pred HHHHHHc--------CcccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 3566665 48999999999999 999999999999999999964
No 336
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=91.07 E-value=0.14 Score=41.30 Aligned_cols=103 Identities=23% Similarity=0.245 Sum_probs=62.6
Q ss_pred eEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC---CCCC-C-CEEEecccccCCCh---------hHHHHHHHHH
Q 017495 233 KGISFDL-PHVLANAPSF-------PGVEHVGGDMFE---NVPR-G-DAIFLKWMLHGWTD---------EHCLKLLKNC 290 (370)
Q Consensus 233 ~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~---~~p~-~-D~i~~~~vLh~~~d---------~~~~~iL~~~ 290 (370)
++++||+ +++++.++++ +||+++..+-.. ..++ . |+++++. -++|. +.-...|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5788998 8888877642 578888777655 2344 3 7777642 23332 2346889999
Q ss_pred HHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcc--cCHHHHHHHHHhCCCCcceEEecC
Q 017495 291 WEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRE--RSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 291 ~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
.+.|+|||.+.|+-..-.+ +|.+ ....+|.+-|...-|.+.....+.
T Consensus 79 l~lL~~gG~i~iv~Y~GH~-----------------------gG~eE~~av~~~~~~L~~~~~~V~~~~~~N 127 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHP-----------------------GGKEESEAVEEFLASLDQKEFNVLKYQFIN 127 (140)
T ss_dssp HHHEEEEEEEEEEE--STC-----------------------HHHHHHHHHHHHHHTS-TTTEEEEEEEESS
T ss_pred HHhhccCCEEEEEEeCCCC-----------------------CCHHHHHHHHHHHHhCCcceEEEEEEEccC
Confidence 9999999999997654332 1111 123455555566778887777764
No 337
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=91.04 E-value=1 Score=35.44 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCC-CCCCCCcchHHHHHHHHhcCCceec
Q 017495 19 IGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLP-TKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+++..++.+.+-|..-+|+...+ + +....||.+.++ + ++..|.+-|+.|+..|++.+
T Consensus 12 ~~~~~l~~ig~kW~~lIl~~L~~---------g---------~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R 69 (120)
T COG1733 12 PVEEALEVIGGKWTLLILRDLFD---------G---------PKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVER 69 (120)
T ss_pred CHHHHHHHHcCccHHHHHHHHhc---------C---------CCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEe
Confidence 46777788888887777765433 5 789999999998 9 99999999999999999997
Q ss_pred cccCCCCCccccceecchhhhhhh
Q 017495 98 SLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 98 ~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
.. .++ -+..-.|++|+.++.|.
T Consensus 70 ~~-~~~-~PprveY~LT~~G~~L~ 91 (120)
T COG1733 70 VV-YPE-EPPRVEYRLTEKGRDLL 91 (120)
T ss_pred ee-cCC-CCceeEEEEhhhHHHHH
Confidence 41 111 12245688888876554
No 338
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=90.97 E-value=1.1 Score=42.70 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=32.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-------CCCeEEEeehh
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-------PCIKGISFDLP 240 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~p 240 (370)
..|++.+. -.....|+|+|.|.|.--..|.+.+ |.+++|+++.|
T Consensus 100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~ 150 (374)
T PF03514_consen 100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPP 150 (374)
T ss_pred HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCC
Confidence 35666666 4467899999999996655555553 67889999873
No 339
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=90.65 E-value=0.092 Score=40.15 Aligned_cols=85 Identities=19% Similarity=0.267 Sum_probs=42.4
Q ss_pred CEEEecccc---c-CCChhHHHHHHHHHHHhCCCCcEEEEEeecC-CCCCCCCccchhhhhhhhHHhhhcCCCcccCHHH
Q 017495 267 DAIFLKWML---H-GWTDEHCLKLLKNCWEALPENGKVIIVESIL-PLVPENQASSHIVFEQDLFMLAQTTGGRERSKKE 341 (370)
Q Consensus 267 D~i~~~~vL---h-~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e 341 (370)
|+|+|..|. | +|.|+....+++++++.|+|||+|++ |+-. ..-.... .......-.+ ..-...+++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w~sY~~~~---~~~~~~~~n~-----~~i~lrP~~ 73 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPWKSYKKAK---RLSEEIRENY-----KSIKLRPDQ 73 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---HHHHHTTT---TS-HHHHHHH-----HH----GGG
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCcHHHHHHh---hhhHHHHhHH-----hceEEChHH
Confidence 777775542 2 35788889999999999999999887 3311 0000000 0000000000 111124567
Q ss_pred HHHHHHh--CCCCcceEEecC
Q 017495 342 YEALAKN--SGFSGLEIVCCA 360 (370)
Q Consensus 342 ~~~ll~~--aGf~~v~~~~~~ 360 (370)
+.+.|.+ .||+.++....+
T Consensus 74 F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHHHHTSTTT---EEEEE---
T ss_pred HHHHHHhcccceEEEEEcccC
Confidence 8888877 699988765553
No 340
>KOG2730 consensus Methylase [General function prediction only]
Probab=90.42 E-value=0.24 Score=42.73 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=41.2
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE 261 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~ 261 (370)
....|+|.-||.|+.+.+++..+|- ++.+|. |.-+..++.+ +||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 4568999999999999999998775 455555 5555555543 699999999987
No 341
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=90.22 E-value=0.32 Score=33.67 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=29.4
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
|-|+.|||+.+|++ ++..+...|++|...|+|+..
T Consensus 25 ~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r~ 59 (65)
T PF01726_consen 25 PPTVREIAEALGLK---STSTVQRHLKALERKGYIRRD 59 (65)
T ss_dssp ---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEEG
T ss_pred CCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccCC
Confidence 55999999999993 499999999999999999963
No 342
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=90.09 E-value=2.3 Score=36.13 Aligned_cols=97 Identities=15% Similarity=0.042 Sum_probs=60.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCCC--CC--C--CCEEEec
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFEN--VP--R--GDAIFLK 272 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~~--~p--~--~D~i~~~ 272 (370)
...++||+=+|+|.++.+-+.+. -.+++.+|. ..+....++ ..++.++..|.... .. . .|+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 46899999999999999988874 346777775 554444433 25678888887741 11 1 3999985
Q ss_pred cccc-CCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 273 WMLH-GWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 273 ~vLh-~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
==.+ .+-+.+...++-.-...|+|+|.+++-.
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 4433 1111111122222456799998887743
No 343
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=89.82 E-value=0.64 Score=32.24 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=35.7
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCC-CcchHHHHHHHHhcCCceec
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPD-APFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~-~~~~l~~~L~~L~~~g~l~~ 97 (370)
|++.|.+. +.|++..+|++.+..+... .+..+++.|++|...|++..
T Consensus 3 IL~~L~~~-------~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~ 50 (66)
T PF08461_consen 3 ILRILAES-------DKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRK 50 (66)
T ss_pred HHHHHHHc-------CCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccc
Confidence 56677665 3699999999998652111 36899999999999997774
No 344
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=89.58 E-value=0.53 Score=40.76 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=45.8
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
.+..++..|... ++.+..+||+.+++ ++..+++.|..|...|+++... . ....|.+|+.
T Consensus 144 ~~~~IL~~l~~~--------g~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~---~---r~~~~~lT~~ 202 (203)
T TIGR01884 144 EELKVLEVLKAE--------GEKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKG---R---KGKRYSLTKL 202 (203)
T ss_pred HHHHHHHHHHHc--------CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc---C---CccEEEeCCC
Confidence 345677777764 27899999999999 9999999999999999999641 0 1355777654
No 345
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=89.55 E-value=0.66 Score=32.33 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=43.3
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecch
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAP 115 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~ 115 (370)
+..++..+..+ +.+..+|++.+++ +...+.+.|+.|.+.|++.... .+ ....|..++
T Consensus 9 ~~~il~~l~~~---------~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~~----~~-~~~~~~~~~ 65 (78)
T cd00090 9 RLRILRLLLEG---------PLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESRR----EG-RRVYYSLTD 65 (78)
T ss_pred HHHHHHHHHHC---------CcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEEE----ec-cEEEEEeCC
Confidence 34466666665 4899999999999 9999999999999999999631 11 135566664
No 346
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=89.26 E-value=2.8 Score=39.18 Aligned_cols=93 Identities=19% Similarity=0.145 Sum_probs=64.6
Q ss_pred CCCCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEecc---CCCCCCC-CCEEEecccccCC
Q 017495 205 FDGLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGD---MFENVPR-GDAIFLKWMLHGW 278 (370)
Q Consensus 205 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D---~~~~~p~-~D~i~~~~vLh~~ 278 (370)
..+..+|+=+|.| .|.++.++++..- .+++++|. ++-.+.+++...-.++... ..+...+ .|+|+-.-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 4466777777766 6788889999776 99999998 7777777766444444433 2222222 377776543 2
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 279 TDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 279 ~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
..+....+.|++||+++++-...
T Consensus 240 ------~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhcCCEEEEECCCC
Confidence 34677889999999999988763
No 347
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=89.10 E-value=0.88 Score=41.40 Aligned_cols=65 Identities=22% Similarity=0.247 Sum_probs=52.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCe-EEEeeh-hhHHHhCCCC-----CCCeEEeccCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIK-GISFDL-PHVLANAPSF-----PGVEHVGGDMF 260 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~ 260 (370)
+.+.+..+. ..+....+|.-=|.|+.+..+++.+|... .+++|. |.+++.+++. +|+.++...|.
T Consensus 12 l~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~ 83 (314)
T COG0275 12 LNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA 83 (314)
T ss_pred HHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence 456667676 66779999999999999999999999775 999998 9999887752 46777666553
No 348
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=88.99 E-value=0.71 Score=43.98 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=52.3
Q ss_pred CCCeEEeccCCC---CCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 250 PGVEHVGGDMFE---NVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 250 ~rv~~~~~D~~~---~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
++|+++.+++.+ ..|.+ |.+++..++..+++++..+.++.+.+.++|||++++-....+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 789999999887 34443 9999999999999999999999999999999999998776554
No 349
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=88.83 E-value=0.75 Score=30.33 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDI 94 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~ 94 (370)
+++|.++||+.+++ +.+-+++-+..|...|+
T Consensus 14 ~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~~ 44 (55)
T PF08279_consen 14 EPITAKELAEELGV----SRRTIRRDIKELREWGI 44 (55)
T ss_dssp TSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT-
T ss_pred CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCC
Confidence 47999999999999 99999999999999993
No 350
>PRK10870 transcriptional repressor MprA; Provisional
Probab=88.82 E-value=0.89 Score=38.37 Aligned_cols=57 Identities=7% Similarity=0.035 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhhc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
+++|..+||+.+++ ++..+.+++.-|+..|+|+... +++|++ .....+|+.++.+..
T Consensus 70 ~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~-~~~DrR-~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 70 HSIQPSELSCALGS----SRTNATRIADELEKRGWIERRE-SDNDRR-CLHLQLTEKGHEFLR 126 (176)
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHHH
Confidence 47899999999999 9999999999999999999742 223321 234567777765553
No 351
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=88.74 E-value=3.1 Score=39.75 Aligned_cols=99 Identities=22% Similarity=0.219 Sum_probs=61.9
Q ss_pred CCCCCeEEEEcCcc-cHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEecc----CCC---CC-CC-C-CEEEec
Q 017495 205 FDGLKVLVDVGGGI-GVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGD----MFE---NV-PR-G-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D----~~~---~~-p~-~-D~i~~~ 272 (370)
..+..+||.+|+|. |..+..+++.....+++.++. ++..+.+++.....++... +.+ .. +. + |+|+-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 55678999999987 889999999886545788775 6666665543222222211 111 11 11 3 777553
Q ss_pred c---------------cccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 273 W---------------MLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 273 ~---------------vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
- +|+-.++. ...++.+.+.|+|+|++++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhccCCEEEEEcC
Confidence 2 12221222 4578889999999999999864
No 352
>PRK05638 threonine synthase; Validated
Probab=88.59 E-value=0.71 Score=45.17 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=48.8
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCC--CCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLP--TKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~--~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
++.|+..|..+ +.+..||++.++ + ++..+++.|+.|...|+|+... ..|+ ...|++|+.++
T Consensus 373 r~~IL~~L~~~---------~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~---~~g~-~~~Y~Lt~~g~ 435 (442)
T PRK05638 373 KLEILKILSER---------EMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAY---RKGR-RVYYKLTEKGR 435 (442)
T ss_pred HHHHHHHHhhC---------CccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEee---cCCC-cEEEEECcHHH
Confidence 44567777765 799999999998 7 8899999999999999998531 1232 45699998876
Q ss_pred hh
Q 017495 119 FL 120 (370)
Q Consensus 119 ~l 120 (370)
.+
T Consensus 436 ~~ 437 (442)
T PRK05638 436 RL 437 (442)
T ss_pred HH
Confidence 43
No 353
>PHA02943 hypothetical protein; Provisional
Probab=88.49 E-value=0.74 Score=37.18 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=37.2
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.+++.|..| ..|..|||+++|+ +....+-.|..|+..|.+.+.
T Consensus 15 eILE~Lk~G---------~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV 57 (165)
T PHA02943 15 KTLRLLADG---------CKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKV 57 (165)
T ss_pred HHHHHHhcC---------CccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEE
Confidence 356666443 7999999999999 999999999999999999974
No 354
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=88.41 E-value=0.93 Score=30.81 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=29.8
Q ss_pred CCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 62 LSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 62 ~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..+||+.+++ +...+++.|..|...|+++.
T Consensus 26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~ 57 (66)
T cd07377 26 PSERELAEELGV----SRTTVREALRELEAEGLVER 57 (66)
T ss_pred CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 359999999999 99999999999999999985
No 355
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=88.02 E-value=0.83 Score=34.05 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=38.1
Q ss_pred HHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 64 ASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 64 ~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.+||+.+++ ++..+.+.++.|...|+|...+ +..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~~--------~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYEP--------YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEcC--------CCceEechhHHHHH
Confidence 4689999999 9999999999999999999631 24688888776544
No 356
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=87.99 E-value=1.3 Score=35.76 Aligned_cols=110 Identities=17% Similarity=0.172 Sum_probs=54.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhh-HHHhCCCCCCCeEEeccCCCCCCC----C-CE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPH-VLANAPSFPGVEHVGGDMFENVPR----G-DA 268 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~-~~~~a~~~~rv~~~~~D~~~~~p~----~-D~ 268 (370)
+.+.+..+.+. ..-|||+|=|.|..=-+|.+.+|+-.++++|..- +-.... -+.-.++.||+.+..|. + .+
T Consensus 18 L~~a~~~v~~~--~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~-P~~~~~ilGdi~~tl~~~~~~g~~a 94 (160)
T PF12692_consen 18 LNWAAAQVAGL--PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSST-PPEEDLILGDIRETLPALARFGAGA 94 (160)
T ss_dssp HHHHHHHTTT----S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG----GGGEEES-HHHHHHHHHHH-S-E
T ss_pred HHHHHHHhcCC--CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCC-CchHheeeccHHHHhHHHHhcCCce
Confidence 34455555422 3689999999999999999999999999999521 111111 12346788888762221 1 33
Q ss_pred EEecccccCCChhHHHHHHH----HHHHhCCCCcEEEEEeecC
Q 017495 269 IFLKWMLHGWTDEHCLKLLK----NCWEALPENGKVIIVESIL 307 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~----~~~~~L~pgG~lli~e~~~ 307 (370)
.+...=|-....+.-..... -+..+|.|||.++-..+..
T Consensus 95 ~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 95 ALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp EEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred EEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 33322222222232233333 3456788999888765544
No 357
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=87.93 E-value=0.97 Score=39.42 Aligned_cols=52 Identities=13% Similarity=0.065 Sum_probs=42.2
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
.+|..+||+.+++ ++..+.++|+.|...|+++... .+ ....+.+|+.+..+.
T Consensus 21 ~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~-~~----r~~~v~LTekG~~ll 72 (217)
T PRK14165 21 KISSSEFANHTGT----SSKTAARILKQLEDEGYITRTI-VP----RGQLITITEKGLDVL 72 (217)
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEE-cC----CceEEEECHHHHHHH
Confidence 6899999999999 9999999999999999998642 11 145688888776444
No 358
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=87.33 E-value=0.85 Score=39.83 Aligned_cols=85 Identities=13% Similarity=0.170 Sum_probs=59.5
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh-hhhcCCCCCCCChhHHHHhh-
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK-FLIKNQDDDDGSVAPLFLLH- 138 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~-~l~~~~~~~~~~~~~~~~~~- 138 (370)
.+.-.|||+.+|+ -++++...++-|+..|++++. | .++|..|..+. ++...- ..++.+....
T Consensus 25 ~v~q~eIA~~lgi----T~QaVsehiK~Lv~eG~i~~~------g--R~~Y~iTkkG~e~l~~~~----~dlr~f~~ev~ 88 (260)
T COG1497 25 RVKQKEIAKKLGI----TLQAVSEHIKELVKEGLIEKE------G--RGEYEITKKGAEWLLEQL----SDLRRFSEEVE 88 (260)
T ss_pred CCCHHHHHHHcCC----CHHHHHHHHHHHHhccceeec------C--CeeEEEehhHHHHHHHHH----HHHHHHHHHHH
Confidence 6899999999999 999999999999999999962 2 46899999885 444321 2244444433
Q ss_pred cChhHHHhhhhhHHH-HhcCCccc
Q 017495 139 HDKVFMESWYHLKDV-ILEGGIPF 161 (370)
Q Consensus 139 ~~~~~~~~~~~l~~~-l~~g~~~~ 161 (370)
..-.+...|..+++. ++.|...+
T Consensus 89 ~~l~~~~vw~AIA~edI~~Gd~V~ 112 (260)
T COG1497 89 LVLDYVMVWTAIAKEDIKEGDTVY 112 (260)
T ss_pred HHHhhHHHHHHhhHhhhccCCEEE
Confidence 112344677776655 55555543
No 359
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=87.26 E-value=0.86 Score=37.48 Aligned_cols=46 Identities=7% Similarity=0.169 Sum_probs=41.5
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..|++.|..+ +..|..+||+++|+ ++..+.+=++.|.+.|++..
T Consensus 10 ~D~~Il~~Lq~d--------~R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~~ 55 (153)
T PRK11179 10 LDRGILEALMEN--------ARTPYAELAKQFGV----SPGTIHVRVEKMKQAGIITG 55 (153)
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 567788999876 48999999999999 99999999999999999983
No 360
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=87.07 E-value=0.96 Score=35.07 Aligned_cols=51 Identities=25% Similarity=0.358 Sum_probs=39.1
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCC-CCcchHHHHHHHHhcCCceecc
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNP-DAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~-~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+.-|++.|... +.+.|+++|.+.+.-+.+ .+..-+.|.|+.|+..|++.+.
T Consensus 3 R~~Il~~l~~~-------~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~ 54 (116)
T cd07153 3 RLAILEVLLES-------DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREI 54 (116)
T ss_pred HHHHHHHHHhC-------CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 45578888764 248999999999832111 1788899999999999999974
No 361
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=87.00 E-value=1.1 Score=34.92 Aligned_cols=49 Identities=10% Similarity=0.212 Sum_probs=43.4
Q ss_pred HHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 37 KSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 37 ~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+..+...|.+.+... |.+|..+++..+|+ +...+.++++.|++.|-|..
T Consensus 10 r~eLk~rIvElVRe~--------GRiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~ 58 (127)
T PF06163_consen 10 REELKARIVELVREH--------GRITIKQLVAKTGA----SRNTVKRYLRELVARGDLYR 58 (127)
T ss_pred HHHHHHHHHHHHHHc--------CCccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEe
Confidence 445677888888876 59999999999999 99999999999999999985
No 362
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=86.89 E-value=1.9 Score=44.54 Aligned_cols=96 Identities=23% Similarity=0.202 Sum_probs=55.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhhC-------C-----CCeEEEeeh-h---hHHHhCC----------------------C
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRY-------P-----CIKGISFDL-P---HVLANAP----------------------S 248 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-p---~~~~~a~----------------------~ 248 (370)
+.-+|+|+|=|+|.......+.+ | .++++.++. | +.+..+. .
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 45799999999998777666544 3 367777774 3 1111110 0
Q ss_pred -------CC--CCeEEeccCCCCCC---C-CCEEEeccc-ccCCChhHHHHHHHHHHHhCCCCcEEEE
Q 017495 249 -------FP--GVEHVGGDMFENVP---R-GDAIFLKWM-LHGWTDEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 249 -------~~--rv~~~~~D~~~~~p---~-~D~i~~~~v-Lh~~~d~~~~~iL~~~~~~L~pgG~lli 302 (370)
.. ++++..||+.+..+ . .|++++--. -..-|+--...+++.+++.++|||.+.-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 01 23456677665222 2 388776321 1111111224788999999999888874
No 363
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=86.63 E-value=0.84 Score=38.03 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=42.6
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
-..+..|+.+|... +..|..+||+++|+ ++..+.+=++-|...|+++.
T Consensus 13 D~~D~~IL~~Lq~d--------~R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 13 DRIDRNILNELQKD--------GRISNVELSKRVGL----SPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHHHHHHhccC--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 34677889999876 48999999999999 99999999999999999983
No 364
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=86.42 E-value=1.1 Score=33.60 Aligned_cols=33 Identities=18% Similarity=0.073 Sum_probs=31.8
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
++|..|||+.+|+ ++..+.|.|+.|...|+|..
T Consensus 47 ~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r 79 (95)
T TIGR01610 47 RVTATVIAELTGL----SRTHVSDAIKSLARRRIIFR 79 (95)
T ss_pred ccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 7999999999999 99999999999999999995
No 365
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=86.37 E-value=0.71 Score=31.66 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=31.1
Q ss_pred CCCC-CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 59 GELL-SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 59 ~~~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+..+ +..+||+.+++ +..-+++-|+.|.+.|+++..
T Consensus 21 g~~lps~~~la~~~~v----sr~tvr~al~~L~~~g~i~~~ 57 (64)
T PF00392_consen 21 GDRLPSERELAERYGV----SRTTVREALRRLEAEGLIERR 57 (64)
T ss_dssp TSBE--HHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CCEeCCHHHHHHHhcc----CCcHHHHHHHHHHHCCcEEEE
Confidence 3578 99999999999 999999999999999999863
No 366
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=86.27 E-value=5.9 Score=39.35 Aligned_cols=95 Identities=15% Similarity=0.145 Sum_probs=61.6
Q ss_pred CCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC--------------C--------
Q 017495 207 GLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE--------------N-------- 262 (370)
Q Consensus 207 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~--------------~-------- 262 (370)
++.+|+=+|+| .|..+...++.+. ..++++|. ++..+.++... .++...|..+ +
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aeslG-A~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESMG-AEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcC-CeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 57899999999 6777777887765 48999998 88887776542 2222111110 1
Q ss_pred ----CCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 263 ----VPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 263 ----~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
....|+++-..-...-+.+ ..+.+...+.|||||.++.+-.
T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP--~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAP--KLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCcccCc--chHHHHHHHhcCCCCEEEEEcc
Confidence 0123998876544221112 2335999999999999887643
No 367
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=85.57 E-value=0.82 Score=34.92 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=32.3
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
|++.|... +.++-++||+.+++ ++.-++++|..|...|++..
T Consensus 18 Il~~L~~~--------~~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~ 59 (105)
T PF02002_consen 18 ILDALLRK--------GELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSY 59 (105)
T ss_dssp HHHHHHHH----------B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EE
T ss_pred HHHHHHHc--------CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEE
Confidence 57777754 37999999999999 99999999999999999975
No 368
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=85.32 E-value=3.3 Score=30.84 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=34.2
Q ss_pred HHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHh
Q 017495 37 KSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLA 90 (370)
Q Consensus 37 ~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~ 90 (370)
..+.+.||+..|-.+ ++|-.|||+.+|+ +...+.|+=+.|.
T Consensus 40 ~l~~R~~i~~~Ll~~---------~~tQrEIa~~lGi----S~atIsR~sn~lk 80 (94)
T TIGR01321 40 DLGDRIRIVNELLNG---------NMSQREIASKLGV----SIATITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHHhC---------CCCHHHHHHHhCC----ChhhhhHHHhhcc
Confidence 346799999988776 7999999999999 8888888777654
No 369
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=85.27 E-value=1.2 Score=36.35 Aligned_cols=46 Identities=15% Similarity=0.319 Sum_probs=41.2
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..+++.|... ++.+..+||+++|+ ++..+.+-++-|...|++..
T Consensus 9 ~D~~IL~~L~~d--------~r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~ 54 (154)
T COG1522 9 IDRRILRLLQED--------ARISNAELAERVGL----SPSTVLRRIKRLEEEGVIKG 54 (154)
T ss_pred HHHHHHHHHHHh--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceee
Confidence 456788888876 48999999999999 99999999999999999984
No 370
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=85.04 E-value=1.3 Score=43.98 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=51.6
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.+..++..|... ++++..+||+.+++ ++..+.++++.|.+.|+|+...+ ....|.+|+.++.
T Consensus 7 ~e~~vL~~L~~~--------~~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~~------~~~~i~LTeeG~~ 68 (489)
T PRK04172 7 NEKKVLKALKEL--------KEATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEER------VEEVYVLTEEGKK 68 (489)
T ss_pred HHHHHHHHHHhC--------CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEee------eEEEEEECHHHHH
Confidence 445667777664 37999999999999 99999999999999999996421 1467999999975
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 69 ~~~ 71 (489)
T PRK04172 69 YAE 71 (489)
T ss_pred HHH
Confidence 444
No 371
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=84.42 E-value=0.85 Score=29.37 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=23.8
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCc
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDI 94 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~ 94 (370)
.++.++..+.++ .|..+||+.+|+ ++.-+.+|++.....|+
T Consensus 6 ~R~~ii~l~~~G----------~s~~~ia~~lgv----s~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 6 RRAQIIRLLREG----------WSIREIAKRLGV----SRSTVYRWIKRYREEGL 46 (50)
T ss_dssp ----HHHHHHHT------------HHHHHHHHTS-----HHHHHHHHT-------
T ss_pred HHHHHHHHHHCC----------CCHHHHHHHHCc----CHHHHHHHHHHcccccc
Confidence 355566666664 899999999999 99999999998776663
No 372
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=84.26 E-value=5.6 Score=29.76 Aligned_cols=82 Identities=11% Similarity=0.042 Sum_probs=49.0
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHH--hhhcCCCc------ccCHHHHHHH
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFM--LAQTTGGR------ERSKKEYEAL 345 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~------~~t~~e~~~l 345 (370)
+|=|++.++..++|+.+...-+ |.+++.-. |.. . .+.+.. .-+++++. ...++++.+.
T Consensus 4 vLIHYp~~d~~~~l~~La~~t~--~~~ifTfA--P~T-------~---~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~ 69 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLASRTR--GSLIFTFA--PRT-------P---LLALMHAIGKLFPRPDRSPRIYPHREEDLRRA 69 (97)
T ss_pred eEeccCHHHHHHHHHHHHHhcc--CcEEEEEC--CCC-------H---HHHHHHHHhccCCCCCCCCcEEEeCHHHHHHH
Confidence 4556788899999999887654 45655321 111 1 111111 11122322 2268999999
Q ss_pred HHhCCCCcceEEecCCCe--e-EEEEe
Q 017495 346 AKNSGFSGLEIVCCAYNS--W-VMEFH 369 (370)
Q Consensus 346 l~~aGf~~v~~~~~~~~~--~-~~e~~ 369 (370)
+.++||++.+...+..++ + ++|++
T Consensus 70 l~~~g~~~~r~~ris~gFY~S~llE~~ 96 (97)
T PF07109_consen 70 LAAAGWRIGRTERISSGFYISQLLEAV 96 (97)
T ss_pred HHhCCCeeeecccccCcChHHHHhhcc
Confidence 999999999887775433 2 55554
No 373
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=84.20 E-value=4.9 Score=37.95 Aligned_cols=94 Identities=24% Similarity=0.206 Sum_probs=65.8
Q ss_pred CCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCC-C------CC--CCC-CEEEecccc
Q 017495 208 LKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMF-E------NV--PRG-DAIFLKWML 275 (370)
Q Consensus 208 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~-~------~~--p~~-D~i~~~~vL 275 (370)
..+|+=+||| .|.++..+++.+.-.++++.|. +.-++.+++..........-. . .. ..+ |+++=+.-
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 3499999999 6788888999888889999998 888888876322121111111 0 11 123 88876544
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
....+..+.++++|||.+.++-....+
T Consensus 248 -------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 -------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred -------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 134788999999999999998876554
No 374
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=84.16 E-value=12 Score=31.89 Aligned_cols=103 Identities=16% Similarity=0.170 Sum_probs=72.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhh----CCCCeEEEeeh--hhHHHhCCCCCCCeEEeccCCCC-CC-------CC--CEEE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSR----YPCIKGISFDL--PHVLANAPSFPGVEHVGGDMFEN-VP-------RG--DAIF 270 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~--p~~~~~a~~~~rv~~~~~D~~~~-~p-------~~--D~i~ 270 (370)
++..|.++|.-.|..+..++.. ....+++++|+ -..-..+++.++|.|++++-.++ .. .. -+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 5789999999999887776554 23467777764 22223344457899999998773 11 11 5666
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCC
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVP 311 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~ 311 (370)
+-..-|+ -+.+.+.|+-....|..|-++++-|...++-+
T Consensus 149 ilDsdHs--~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHS--MEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCch--HHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 6566665 45677888989999999999999998887654
No 375
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=84.11 E-value=1 Score=40.13 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=54.0
Q ss_pred CCCeEEEEcCcccHHHHHH---HhhC--CCCeEEEeeh----hhHHHh---------------------------CCCC-
Q 017495 207 GLKVLVDVGGGIGVTLGMI---TSRY--PCIKGISFDL----PHVLAN---------------------------APSF- 249 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l---~~~~--p~~~~~~~D~----p~~~~~---------------------------a~~~- 249 (370)
=+.-|+|+||-.|..+..+ ++.+ ++-++.++|. |..-.. ....
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 3579999999999876543 3333 4567888882 322110 0111
Q ss_pred ---CCCeEEeccCCCCCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 250 ---PGVEHVGGDMFENVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 250 ---~rv~~~~~D~~~~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+++.++.|.+.+..|.. +-|-+.++=.++-+ -....|..++..|.|||.+++-|.
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYe-sT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYE-STKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHH-HHHHHHHHHGGGEEEEEEEEESST
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccchH-HHHHHHHHHHhhcCCCeEEEEeCC
Confidence 46899999987644432 22222222222322 346899999999999999998554
No 376
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=84.11 E-value=1.4 Score=34.39 Aligned_cols=35 Identities=9% Similarity=-0.006 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.++|++|||+.+.+ .++.++.+|+.|.+.|+|+-.
T Consensus 18 ~~vtl~elA~~l~c----S~Rn~r~lLkkm~~~gWi~W~ 52 (115)
T PF12793_consen 18 VEVTLDELAELLFC----SRRNARTLLKKMQEEGWITWQ 52 (115)
T ss_pred cceeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeee
Confidence 47899999999999 999999999999999999974
No 377
>PRK10742 putative methyltransferase; Provisional
Probab=83.85 E-value=2.1 Score=38.05 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=35.5
Q ss_pred HHHHHhhcCCCCCC--eEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHh
Q 017495 196 NKILDVYRGFDGLK--VLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLAN 245 (370)
Q Consensus 196 ~~l~~~~~~~~~~~--~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~ 245 (370)
+.+++.+. +++.. +|||.=+|.|..+..++.+ +++++.++. |.+...
T Consensus 76 ~~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaal 125 (250)
T PRK10742 76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAAL 125 (250)
T ss_pred cHHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 35666665 56555 9999999999999999986 567999987 555443
No 378
>PF13730 HTH_36: Helix-turn-helix domain
Probab=83.84 E-value=1.1 Score=29.50 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=27.7
Q ss_pred CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCce
Q 017495 63 SASKIAARLPTKNPDAPFLLDRMLSLLASYDIL 95 (370)
Q Consensus 63 t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l 95 (370)
|.+.||+.+|+ +.+-+.+.++.|+..|+|
T Consensus 27 S~~~la~~~g~----s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGV----SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCc----CHHHHHHHHHHHHHCcCC
Confidence 89999999999 999999999999999986
No 379
>PF13518 HTH_28: Helix-turn-helix domain
Probab=83.71 E-value=1.6 Score=28.23 Aligned_cols=29 Identities=17% Similarity=0.068 Sum_probs=27.0
Q ss_pred CCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCc
Q 017495 62 LSASKIAARLPTKNPDAPFLLDRMLSLLASYDI 94 (370)
Q Consensus 62 ~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~ 94 (370)
.|+.++|+.+|+ ++..+.+|++.....|+
T Consensus 13 ~s~~~~a~~~gi----s~~tv~~w~~~y~~~G~ 41 (52)
T PF13518_consen 13 ESVREIAREFGI----SRSTVYRWIKRYREGGI 41 (52)
T ss_pred CCHHHHHHHHCC----CHhHHHHHHHHHHhcCH
Confidence 599999999999 99999999999998885
No 380
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=83.66 E-value=2 Score=38.67 Aligned_cols=76 Identities=17% Similarity=0.141 Sum_probs=48.4
Q ss_pred HHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcE
Q 017495 221 TLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGK 299 (370)
Q Consensus 221 ~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~ 299 (370)
++..|.+..++.+++++|. +...+.+.+.+-+.-...+ .+.....|+|+++ .|......+|+++...+++|..
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvla-----vP~~~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLA-----VPVSAIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE------S-HHHHHHHHHHHHCGS-TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEc-----CCHHHHHHHHHHhhhhcCCCcE
Confidence 3567888888999999998 7777777544333333332 1223344998876 3455677888888888888765
Q ss_pred EEE
Q 017495 300 VII 302 (370)
Q Consensus 300 lli 302 (370)
+.=
T Consensus 75 v~D 77 (258)
T PF02153_consen 75 VTD 77 (258)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 381
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=83.57 E-value=1.1 Score=31.77 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=25.1
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHh
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLA 90 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~ 90 (370)
++..|+.| .|+|+++||..+|. ....++..|..+.
T Consensus 29 LLr~LA~G--------~PVt~~~LA~a~g~----~~e~v~~~L~~~p 63 (77)
T PF12324_consen 29 LLRLLAKG--------QPVTVEQLAAALGW----PVEEVRAALAAMP 63 (77)
T ss_dssp HHHHHTTT--------S-B-HHHHHHHHT------HHHHHHHHHH-T
T ss_pred HHHHHHcC--------CCcCHHHHHHHHCC----CHHHHHHHHHhCC
Confidence 78889987 69999999999999 7777777776654
No 382
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=83.48 E-value=2.8 Score=30.98 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=49.8
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHH----------HHhcCCce-eccccCCCCCc
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLS----------LLASYDIL-RCSLQNGDNGQ 106 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~----------~L~~~g~l-~~~~~~~~~g~ 106 (370)
.=++..||..|... .| .+.++.|||+.+++ ++..+..-|+ .|+..|++ ++. ...|
T Consensus 8 S~~R~~vl~~L~~~-----yp-~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~---~~~g- 73 (90)
T PF07381_consen 8 SKVRKKVLEYLCSI-----YP-EPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEE---EKGG- 73 (90)
T ss_pred HHHHHHHHHHHHHc-----CC-CcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEee---ecCC-
Confidence 44667788888765 23 58999999999999 8887777665 58999999 332 1223
Q ss_pred cccceecchhhhhhh
Q 017495 107 VERVYGAAPICKFLI 121 (370)
Q Consensus 107 ~~~~y~~~~~~~~l~ 121 (370)
...|++|+.+..++
T Consensus 74 -~k~Y~lT~~G~~~~ 87 (90)
T PF07381_consen 74 -FKYYRLTEKGKRIA 87 (90)
T ss_pred -eeEEEeChhhhhHH
Confidence 45799998876543
No 383
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=83.20 E-value=3.1 Score=35.42 Aligned_cols=67 Identities=15% Similarity=-0.056 Sum_probs=48.4
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
..++..|... +++|..+||+.+.+ +...+.+++.-|...|+|.... .+.|.+ .-...+|+.++.+.
T Consensus 48 ~~iL~~L~~~--------~~itq~eLa~~l~l----~~sTvtr~l~rLE~kGlI~R~~-~~~DrR-~~~I~LTekG~~l~ 113 (185)
T PRK13777 48 HHILWIAYHL--------KGASISEIAKFGVM----HVSTAFNFSKKLEERGYLTFSK-KEDDKR-NTYIELTEKGEELL 113 (185)
T ss_pred HHHHHHHHhC--------CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence 3566667665 37999999999999 8889999999999999999742 222221 23355677776554
Q ss_pred c
Q 017495 122 K 122 (370)
Q Consensus 122 ~ 122 (370)
.
T Consensus 114 ~ 114 (185)
T PRK13777 114 L 114 (185)
T ss_pred H
Confidence 3
No 384
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=83.19 E-value=1.1 Score=31.59 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=31.7
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
++|-++||+.+|+ +...+.+.|+.|...|++..
T Consensus 28 ~lt~~~iA~~~g~----sr~tv~r~l~~l~~~g~I~~ 60 (76)
T PF13545_consen 28 PLTQEEIADMLGV----SRETVSRILKRLKDEGIIEV 60 (76)
T ss_dssp ESSHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 6899999999999 99999999999999999985
No 385
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=83.07 E-value=2.6 Score=38.51 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=67.1
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCC----C--CCCeEEeccCCCC----CCC-CCEEEe
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPS----F--PGVEHVGGDMFEN----VPR-GDAIFL 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~----~--~rv~~~~~D~~~~----~p~-~D~i~~ 271 (370)
..+..+|||..++.|+=+.++++..+ ...++..|. +.-+...+. . ..+.....|.... .+. .|.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45678899999999999999999987 567888896 544443322 1 3455555565442 112 266655
Q ss_pred ------cccccCCCh-------hHH-------HHHHHHHHHhC----CCCcEEEEEeecC
Q 017495 272 ------KWMLHGWTD-------EHC-------LKLLKNCWEAL----PENGKVIIVESIL 307 (370)
Q Consensus 272 ------~~vLh~~~d-------~~~-------~~iL~~~~~~L----~pgG~lli~e~~~ 307 (370)
..++..-++ .+. .++|+++.+.+ ||||+|+-.....
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 112222111 111 47899999999 9999999877654
No 386
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=82.11 E-value=2.4 Score=41.56 Aligned_cols=69 Identities=10% Similarity=0.045 Sum_probs=54.9
Q ss_pred HHhcChHHHHhhcccccCCCCCC-CCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 39 AIELNVIDIISAASAAEDGHGEL-LSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~-~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
+.+..|+..|... ++ .+.++||+.+|+ ++..+.+.+..|.+.|+++.... +...|.+|..+
T Consensus 3 ~~e~~iL~~l~~~--------~~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~~------~~~~~~LT~eG 64 (492)
T PLN02853 3 MAEEALLGALSNN--------EEISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQDI------KRETWVLTEEG 64 (492)
T ss_pred hHHHHHHHHHHhc--------CCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE------EEEEEEECHHH
Confidence 4566788888764 24 799999999999 99999999999999999986432 25789999999
Q ss_pred h-hhhcCCC
Q 017495 118 K-FLIKNQD 125 (370)
Q Consensus 118 ~-~l~~~~~ 125 (370)
+ ++....+
T Consensus 65 ~~~l~~G~P 73 (492)
T PLN02853 65 KKYAAEGSP 73 (492)
T ss_pred HHHHHcCCH
Confidence 7 5554444
No 387
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=82.06 E-value=2.7 Score=36.77 Aligned_cols=45 Identities=20% Similarity=0.213 Sum_probs=37.7
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.|++.+..+ ..+.|..|||+++++ ++.-+++.+..|++.|++...
T Consensus 166 ~Vl~~~~~g-------~~g~s~~eIa~~l~i----S~~Tv~~~~~~~~~~~~~~~~ 210 (225)
T PRK10046 166 AVRKLFKEP-------GVQHTAETVAQALTI----SRTTARRYLEYCASRHLIIAE 210 (225)
T ss_pred HHHHHHHcC-------CCCcCHHHHHHHhCc----cHHHHHHHHHHHHhCCeEEEE
Confidence 456666653 125899999999999 999999999999999999863
No 388
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=81.62 E-value=8.3 Score=34.04 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=67.1
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-----hhHHHhCCCCCCCeEEeccCCCCCCC----C--CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-----PHVLANAPSFPGVEHVGGDMFENVPR----G--DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-----p~~~~~a~~~~rv~~~~~D~~~~~p~----~--D~i~~~ 272 (370)
.++..+||-+|.++|....++..-. |+--++.++. -+.+..++++.+|.-+.-|..-|..- + |+|+.-
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaD 233 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFAD 233 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEecc
Confidence 6788999999999999888877653 5555666653 24566677777777777777654321 2 776653
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+-+ +++.+-+.-+++--||+||.++|.=.
T Consensus 234 -vaq---pdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 234 -VAQ---PDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred -CCC---chhhhhhhhhhhhhhccCCeEEEEEe
Confidence 222 34555566688999999999998544
No 389
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=81.18 E-value=2.1 Score=32.44 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=37.3
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+.-.||+.|...- ....++++.+|++++++ +..-++..|+.|...|+|-.
T Consensus 48 ~~~~Vl~~i~~~~----~~~~Gv~v~~I~~~l~~----~~~~v~~al~~L~~eG~IYs 97 (102)
T PF08784_consen 48 LQDKVLNFIKQQP----NSEEGVHVDEIAQQLGM----SENEVRKALDFLSNEGHIYS 97 (102)
T ss_dssp HHHHHHHHHHC--------TTTEEHHHHHHHSTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhcC----CCCCcccHHHHHHHhCc----CHHHHHHHHHHHHhCCeEec
Confidence 4455666665510 11246999999999999 99999999999999999874
No 390
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=80.98 E-value=1.8 Score=32.26 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
++....-|.-..++ +.......++.|+..|++... +.| ....|.+|+.+..|.
T Consensus 30 ~~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~~----~~~-~~~~y~lT~KG~~fl 82 (95)
T COG3432 30 GGIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIKQ----DNG-RRKVYELTEKGKRFL 82 (95)
T ss_pred CCCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEec----cCC-ccceEEEChhHHHHH
Confidence 37888889999999 999999999999999966642 111 134799999987544
No 391
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=80.93 E-value=2.3 Score=38.19 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=39.0
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
..|.+.|... +.+++.|||+.+++ ++.-++|-|+.|.+.|++..
T Consensus 8 ~~Il~~l~~~--------~~~~~~ela~~l~v----S~~TirRdL~~Le~~g~i~r 51 (251)
T PRK13509 8 QILLELLAQL--------GFVTVEKVIERLGI----SPATARRDINKLDESGKLKK 51 (251)
T ss_pred HHHHHHHHHc--------CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 3467788776 48999999999999 99999999999999999985
No 392
>TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein
Probab=80.79 E-value=6 Score=29.85 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=41.2
Q ss_pred CCCHHHHHHHC--------CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARL--------PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
|.+--+|++.+ .+ ++..+.+.|+-|...|+|+....+.+.|+....|.+|+.++.+.
T Consensus 17 ~~~GYei~~~l~~~~~~~~~i----~~gtlY~~L~rLe~~GlI~~~~~~~~~~~~rk~y~iT~~Gr~~l 81 (100)
T TIGR03433 17 PLHGYGIAQRIQQISEDVLQV----EEGSLYPALHRLERRGWIAAEWGESENNRRAKFYRLTAAGRKQL 81 (100)
T ss_pred CCCHHHHHHHHHHHcCCcccc----CCCcHHHHHHHHHHCCCeEEEeeecCCCCCceEEEECHHHHHHH
Confidence 77877887774 45 78889999999999999996311122233346799999987544
No 393
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=80.44 E-value=3 Score=32.20 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=50.3
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
+-.+..++..|... + +.+..+||+.+++ .+..+.++++.|+..|++.... ...|. ....+.+|+.+
T Consensus 21 t~~q~~~L~~l~~~-----~---~~~~~~la~~l~i----~~~~vt~~l~~Le~~glv~r~~-~~~Dr-R~~~l~lT~~G 86 (126)
T COG1846 21 TPPQYQVLLALYEA-----G---GITVKELAERLGL----DRSTVTRLLKRLEDKGLIERLR-DPEDR-RAVLVRLTEKG 86 (126)
T ss_pred CHHHHHHHHHHHHh-----C---CCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecC-Ccccc-ceeeEEECccH
Confidence 44566667777765 1 3443899999999 9999999999999999999752 22221 12346777777
Q ss_pred hhhhcC
Q 017495 118 KFLIKN 123 (370)
Q Consensus 118 ~~l~~~ 123 (370)
+.+...
T Consensus 87 ~~~~~~ 92 (126)
T COG1846 87 RELLEQ 92 (126)
T ss_pred HHHHHH
Confidence 654443
No 394
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=80.03 E-value=2.4 Score=41.35 Aligned_cols=54 Identities=24% Similarity=0.253 Sum_probs=42.1
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
|...|..+ |.|+.||++.+++ +...+++.|..| .|+|... ..|+ ..+|++....
T Consensus 5 ~~~~L~~g---------~~~~~eL~~~l~~----sq~~~s~~L~~L--~~~V~~~----~~gr-~~~Y~l~~~~ 58 (442)
T PRK09775 5 LTTLLLQG---------PLSAAELAARLGV----SQATLSRLLAAL--GDQVVRF----GKAR-ATRYALLRPL 58 (442)
T ss_pred HHHHHhcC---------CCCHHHHHHHhCC----CHHHHHHHHHHh--hcceeEe----ccCc-eEEEEecccc
Confidence 45667765 8999999999999 999999999999 8888753 2343 3667776543
No 395
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=79.48 E-value=2.4 Score=38.10 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=39.6
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+..|.+.|... +.+++.|||+.+++ ++.-++|-|..|...|++.+
T Consensus 7 ~~~Il~~l~~~--------~~~~~~ela~~l~v----S~~TiRRdL~~Le~~g~l~r 51 (252)
T PRK10906 7 HDAIIELVKQQ--------GYVSTEELVEHFSV----SPQTIRRDLNDLAEQNKILR 51 (252)
T ss_pred HHHHHHHHHHc--------CCEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEE
Confidence 34567788776 47999999999999 99999999999999999985
No 396
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=79.34 E-value=4.1 Score=36.43 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=46.0
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
..++-.|-.- |+.|+.||++..|+ +...+...|+.|...|+++.. .|+ +..|+.-+....+
T Consensus 19 a~vY~aLl~~--------g~~tA~eis~~sgv----P~~kvY~vl~sLe~kG~v~~~-----~g~-P~~y~av~p~~~i 79 (247)
T COG1378 19 AKVYLALLCL--------GEATAKEISEASGV----PRPKVYDVLRSLEKKGLVEVI-----EGR-PKKYRAVPPEELI 79 (247)
T ss_pred HHHHHHHHHh--------CCccHHHHHHHcCC----CchhHHHHHHHHHHCCCEEee-----CCC-CceEEeCCHHHHH
Confidence 3455555553 38999999999999 999999999999999999963 243 4667765544433
No 397
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=78.88 E-value=25 Score=27.30 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=53.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCCCeEEeccCCCCCC----CCCEEEecccccCCChh
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFENVP----RGDAIFLKWMLHGWTDE 281 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~~p----~~D~i~~~~vLh~~~d~ 281 (370)
....+|++||-|.=......+.++ +..++..|+.+. .+. ..++++..|+++|.- .+|+|.+.. +++
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiR-----ppp 81 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--TAP--EGLRFVVDDITNPNISIYEGADLIYSIR-----PPP 81 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--cCc--ccceEEEccCCCccHHHhhCccceeecC-----CCH
Confidence 345699999988664444433333 367788887332 222 579999999998532 238887743 355
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEe
Q 017495 282 HCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 282 ~~~~iL~~~~~~L~pgG~lli~e 304 (370)
+....+=.+.++++ ..++|.-
T Consensus 82 El~~~ildva~aVg--a~l~I~p 102 (129)
T COG1255 82 ELQSAILDVAKAVG--APLYIKP 102 (129)
T ss_pred HHHHHHHHHHHhhC--CCEEEEe
Confidence 55655555666554 3455533
No 398
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=78.85 E-value=2.6 Score=40.76 Aligned_cols=34 Identities=26% Similarity=0.244 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.|.|.++|++++++ ++..++++|+.|...|++.+
T Consensus 309 ~~~t~~~La~~l~~----~~~~v~~iL~~L~~agLI~~ 342 (412)
T PRK04214 309 KALDVDEIRRLEPM----GYDELGELLCELARIGLLRR 342 (412)
T ss_pred CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCeEe
Confidence 48999999999999 99999999999999999985
No 399
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=78.72 E-value=11 Score=34.81 Aligned_cols=90 Identities=16% Similarity=0.010 Sum_probs=49.0
Q ss_pred CCeEEEEcCcc-c-HHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCCCCCEEEecccccCCChhHHH
Q 017495 208 LKVLVDVGGGI-G-VTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCL 284 (370)
Q Consensus 208 ~~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~ 284 (370)
..+|.=||+|. | .++..+.+.....+++++|. ++..+.+.+..-......+..+.....|+|+++- +.....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-----p~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-----PVGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-----CHHHHH
Confidence 35788889885 3 33334444322247888887 6555554432211111112111222348887753 334446
Q ss_pred HHHHHHHHhCCCCcEEEE
Q 017495 285 KLLKNCWEALPENGKVII 302 (370)
Q Consensus 285 ~iL~~~~~~L~pgG~lli 302 (370)
.+++.+...++||..++.
T Consensus 81 ~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 81 AVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHhhCCCCCEEEe
Confidence 778888888888876554
No 400
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=78.69 E-value=2.9 Score=29.86 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
.|+...+||+.++. ++.-++--|..|.++|+|+.. .| +.+.|..|..+
T Consensus 22 ~PVgSk~ia~~l~~----s~aTIRN~M~~Le~lGlve~~-----p~-~s~GriPT~~a 69 (78)
T PF03444_consen 22 EPVGSKTIAEELGR----SPATIRNEMADLEELGLVESQ-----PH-PSGGRIPTDKA 69 (78)
T ss_pred CCcCHHHHHHHHCC----ChHHHHHHHHHHHHCCCccCC-----CC-CCCCCCcCHHH
Confidence 58999999999999 999999999999999999841 11 13556666544
No 401
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=78.40 E-value=2.2 Score=37.23 Aligned_cols=44 Identities=20% Similarity=0.142 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHH
Q 017495 31 VLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLL 89 (370)
Q Consensus 31 ~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L 89 (370)
..-.+|+.|.++|-||. +. ..+..+||+.+|+ ++..+...||..
T Consensus 159 rQ~~vL~~A~~~GYFd~-PR----------~~~l~dLA~~lGI----Skst~~ehLRrA 202 (215)
T COG3413 159 RQLEVLRLAYKMGYFDY-PR----------RVSLKDLAKELGI----SKSTLSEHLRRA 202 (215)
T ss_pred HHHHHHHHHHHcCCCCC-Cc----------cCCHHHHHHHhCC----CHHHHHHHHHHH
Confidence 45579999999999998 44 3899999999999 777777777653
No 402
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.35 E-value=12 Score=34.61 Aligned_cols=97 Identities=18% Similarity=0.187 Sum_probs=67.4
Q ss_pred CCCCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCC--CCeEEec-----cCCC----CCCC--CCEE
Q 017495 205 FDGLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFP--GVEHVGG-----DMFE----NVPR--GDAI 269 (370)
Q Consensus 205 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~--rv~~~~~-----D~~~----~~p~--~D~i 269 (370)
++...+||=+|+| .|..+...++.+.-.++++.|+ +.-++.|++.. -+..... ++.+ .... .|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 6678999999999 7888888999998889999998 88888887641 1111111 1101 0111 2777
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
+-...++ ..++....++++||.+++...-.+.
T Consensus 247 ~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred EEccCch--------HHHHHHHHHhccCCEEEEeccCCCc
Confidence 7766664 3466778899999999998865543
No 403
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=78.28 E-value=11 Score=34.28 Aligned_cols=87 Identities=18% Similarity=0.035 Sum_probs=53.6
Q ss_pred CeEEEEcCc--ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEe-ccC-CCCCCCCCEEEecccccCCChhHH
Q 017495 209 KVLVDVGGG--IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVG-GDM-FENVPRGDAIFLKWMLHGWTDEHC 283 (370)
Q Consensus 209 ~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~-~D~-~~~~p~~D~i~~~~vLh~~~d~~~ 283 (370)
.+|+=+|.| -|.++..+.+......+++.|. ...+..+...+ +.... .+. ......+|+|+++ .|-...
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg-v~d~~~~~~~~~~~~~aD~Viva-----vPi~~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG-VIDELTVAGLAEAAAEADLVIVA-----VPIEAT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC-cccccccchhhhhcccCCEEEEe-----ccHHHH
Confidence 466677777 5566667777677777888887 54554444322 22211 121 1233345998876 344566
Q ss_pred HHHHHHHHHhCCCCcEEE
Q 017495 284 LKLLKNCWEALPENGKVI 301 (370)
Q Consensus 284 ~~iL~~~~~~L~pgG~ll 301 (370)
..+|+++...|+||..+.
T Consensus 78 ~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 78 EEVLKELAPHLKKGAIVT 95 (279)
T ss_pred HHHHHHhcccCCCCCEEE
Confidence 788999999999876554
No 404
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=77.98 E-value=2.6 Score=26.57 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=17.2
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHH
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLS 87 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~ 87 (370)
+.|+.+||+.+|+ +..-+.|+|+
T Consensus 21 G~si~~IA~~~gv----sr~TvyR~l~ 43 (45)
T PF02796_consen 21 GMSIAEIAKQFGV----SRSTVYRYLN 43 (45)
T ss_dssp T--HHHHHHHTTS-----HHHHHHHHC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHh
Confidence 4999999999999 8888887764
No 405
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=77.96 E-value=10 Score=34.27 Aligned_cols=202 Identities=14% Similarity=0.101 Sum_probs=103.0
Q ss_pred CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhhcCCCCCCCChhHHHHh--hcC
Q 017495 63 SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLL--HHD 140 (370)
Q Consensus 63 t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~ 140 (370)
+.-.|++...+ +-+.+..+++.|...|++..+ ++.-.+|..+..+++... +...-.+ .+.
T Consensus 36 d~wkIvd~s~~----plp~v~~i~~~l~~egiv~~~---------~g~v~~TekG~E~~e~~g-----i~~~~~~~C~~C 97 (354)
T COG1568 36 DFWKIVDYSDL----PLPLVASILEILEDEGIVKIE---------EGGVELTEKGEELAEELG-----IKKKYDYTCECC 97 (354)
T ss_pred chHhhhhhccC----CchHHHHHHHHHHhcCcEEEe---------cCcEeehhhhHHHHHHhC-----CCccccccccCc
Confidence 88889988888 889999999999999999963 345788888887776432 2111110 000
Q ss_pred ---hhHHHhhhhhHHHHhcCCccchhccCCChhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhc-CCCCCCeEEEEcC
Q 017495 141 ---KVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYR-GFDGLKVLVDVGG 216 (370)
Q Consensus 141 ---~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~ 216 (370)
..-...+..|.+.++ ++....|.-.+.|.++...-.... ..++-.+. +--.+..|+-+|
T Consensus 98 eGrgi~l~~f~dll~kf~---------------eiaK~RP~p~~~yDQgfvTpEttv-~Rv~lm~~RGDL~gK~I~vvG- 160 (354)
T COG1568 98 EGRGISLQAFKDLLEKFR---------------EIAKDRPEPLHQYDQGFVTPETTV-SRVALMYSRGDLEGKEIFVVG- 160 (354)
T ss_pred CCccccchhHHHHHHHHH---------------HHHhcCCCcchhccccccccccee-eeeeeeccccCcCCCeEEEEc-
Confidence 000011222222222 111111222222222211100000 00000011 111356799999
Q ss_pred cccHHHHHHHh-hCCCCeEEEeeh-hhHHHhC----CC--CCCCeEEeccCCCCCCCC-----CEEEecccccCCChhHH
Q 017495 217 GIGVTLGMITS-RYPCIKGISFDL-PHVLANA----PS--FPGVEHVGGDMFENVPRG-----DAIFLKWMLHGWTDEHC 283 (370)
Q Consensus 217 G~G~~~~~l~~-~~p~~~~~~~D~-p~~~~~a----~~--~~rv~~~~~D~~~~~p~~-----D~i~~~~vLh~~~d~~~ 283 (370)
-.-..+.+++- ..|. ++.++|+ ...+... .+ ..+++.+..|...|+|+. |+++.--. + +-+..
T Consensus 161 DDDLtsia~aLt~mpk-~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp-e--Ti~al 236 (354)
T COG1568 161 DDDLTSIALALTGMPK-RIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP-E--TIKAL 236 (354)
T ss_pred CchhhHHHHHhcCCCc-eEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch-h--hHHHH
Confidence 43334444333 2333 5556665 3333322 22 367999999999999862 88764210 0 00123
Q ss_pred HHHHHHHHHhCCCC---cEEEEE
Q 017495 284 LKLLKNCWEALPEN---GKVIIV 303 (370)
Q Consensus 284 ~~iL~~~~~~L~pg---G~lli~ 303 (370)
..+|.+=.+.||.- |++.|.
T Consensus 237 k~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 237 KLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred HHHHhccHHHhcCCCccceEeee
Confidence 46677777778754 777663
No 406
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=77.80 E-value=5.1 Score=28.13 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=36.1
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
|+..++.+ ..|.++|-+.+|+ +..-+...|..|+..|++.+
T Consensus 10 IL~~ls~~---------c~TLeeL~ekTgi----~k~~LlV~LsrL~k~GiI~R 50 (72)
T PF05584_consen 10 ILIILSKR---------CCTLEELEEKTGI----SKNTLLVYLSRLAKRGIIER 50 (72)
T ss_pred HHHHHHhc---------cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeee
Confidence 45556665 7999999999999 99999999999999999995
No 407
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=77.78 E-value=3.7 Score=30.49 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=39.1
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.+.|+.+|... +|=.+.-||+.+++ +...++..|+.|..+|+|++.
T Consensus 9 ~~~IL~hl~~~--------~~Dy~k~ia~~l~~----~~~~v~~~l~~Le~~GLler~ 54 (92)
T PF10007_consen 9 DLKILQHLKKA--------GPDYAKSIARRLKI----PLEEVREALEKLEEMGLLERV 54 (92)
T ss_pred HHHHHHHHHHH--------CCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 45677777765 36678889999999 999999999999999999974
No 408
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=77.73 E-value=4.4 Score=39.88 Aligned_cols=70 Identities=10% Similarity=0.145 Sum_probs=54.1
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
..+..|+..|... +...+.++||+.+|+ ++..+.+.+..|.+.|+++.... +...|.+|..++
T Consensus 6 ~~e~~iL~~l~~~-------~~~~~~~~la~~~~~----~~~~v~~~~~~L~~kg~v~~~~~------~~~~~~LT~eG~ 68 (494)
T PTZ00326 6 LEENTILSKLESE-------NEIVNSLALAESLNI----DHQKVVGAIKSLESANYITTEMK------KSNTWTLTEEGE 68 (494)
T ss_pred HHHHHHHHHHHhc-------CCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE------EEEEEEECHHHH
Confidence 3455677777762 136899999999999 99999999999999999986432 257899999997
Q ss_pred -hhhcCCC
Q 017495 119 -FLIKNQD 125 (370)
Q Consensus 119 -~l~~~~~ 125 (370)
++....+
T Consensus 69 ~~~~~G~P 76 (494)
T PTZ00326 69 DYLKNGSP 76 (494)
T ss_pred HHHHcCCH
Confidence 4544444
No 409
>PRK13699 putative methylase; Provisional
Probab=77.34 E-value=8.9 Score=33.78 Aligned_cols=76 Identities=18% Similarity=0.187 Sum_probs=0.0
Q ss_pred CeEEeccCCC---CCCCC--CEEEec-------------ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCC
Q 017495 252 VEHVGGDMFE---NVPRG--DAIFLK-------------WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPEN 313 (370)
Q Consensus 252 v~~~~~D~~~---~~p~~--D~i~~~-------------~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~ 313 (370)
+++..+|..+ ..|.. |+|+.. .+-.....+-....++.++++|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i----------- 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS----------- 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE-----------
Q ss_pred CccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEE
Q 017495 314 QASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 314 ~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~ 357 (370)
.........+...++++||...+..
T Consensus 71 -------------------f~~~~~~~~~~~al~~~GF~l~~~I 95 (227)
T PRK13699 71 -------------------FYGWNRVDRFMAAWKNAGFSVVGHL 95 (227)
T ss_pred -------------------EeccccHHHHHHHHHHCCCEEeeEE
No 410
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=77.14 E-value=2.7 Score=37.78 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=41.5
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccc
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSL 99 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 99 (370)
+..+++.+... ||-++-+||.+++|+ +..-+.|+|+-|+..|++++.+
T Consensus 197 e~~il~~i~~~-------GGri~Q~eL~r~lgl----sktTvsR~L~~LEk~GlIe~~K 244 (258)
T COG2512 197 EKEILDLIRER-------GGRITQAELRRALGL----SKTTVSRILRRLEKRGLIEKEK 244 (258)
T ss_pred HHHHHHHHHHh-------CCEEeHHHHHHhhCC----ChHHHHHHHHHHHhCCceEEEE
Confidence 45577788765 367999999999999 9999999999999999999753
No 411
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=76.85 E-value=27 Score=31.72 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=68.5
Q ss_pred eEEEEcCcccHHHHHHHhhCCCCe-EEEeeh-hhHHHhCCCCCCCeEEeccCCC-C----CCCCCEEEecccccCCC---
Q 017495 210 VLVDVGGGIGVTLGMITSRYPCIK-GISFDL-PHVLANAPSFPGVEHVGGDMFE-N----VPRGDAIFLKWMLHGWT--- 279 (370)
Q Consensus 210 ~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~----~p~~D~i~~~~vLh~~~--- 279 (370)
+++|+-||.|.+...+.... .+ +..+|. +.+++..+.+-.-.+..+|+.+ . .+..|+++...-...++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag 79 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG 79 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence 68999999999998888753 44 456787 6666554433112256677766 2 12238888754333222
Q ss_pred ------hhH---HHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCC
Q 017495 280 ------DEH---CLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSG 350 (370)
Q Consensus 280 ------d~~---~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 350 (370)
|+. ...++ ++.+.++| .++++|.+..-. . ........+|.+.|++.|
T Consensus 80 ~~~~~~d~r~~L~~~~~-~~i~~~~P--~~~v~ENV~g~~--------------------~-~~~~~~~~~i~~~l~~~G 135 (275)
T cd00315 80 KRKGFEDTRGTLFFEII-RILKEKKP--KYFLLENVKGLL--------------------T-HDNGNTLKVILNTLEELG 135 (275)
T ss_pred hcCCCCCchHHHHHHHH-HHHHhcCC--CEEEEEcCcchh--------------------c-cCchHHHHHHHHHHHhCC
Confidence 221 11233 33344456 577777765310 0 011123567888889999
Q ss_pred CCcce
Q 017495 351 FSGLE 355 (370)
Q Consensus 351 f~~v~ 355 (370)
|.+..
T Consensus 136 Y~~~~ 140 (275)
T cd00315 136 YNVYW 140 (275)
T ss_pred cEEEE
Confidence 87643
No 412
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=76.67 E-value=3 Score=37.48 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=39.8
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+..|++.|... +.+++.|||+.+++ ++.-+||=|+.|...|++.+
T Consensus 7 ~~~Il~~L~~~--------~~v~v~eLa~~l~V----S~~TIRRDL~~Le~~g~l~r 51 (256)
T PRK10434 7 QAAILEYLQKQ--------GKTSVEELAQYFDT----TGTTIRKDLVILEHAGTVIR 51 (256)
T ss_pred HHHHHHHHHHc--------CCEEHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 34577888876 48999999999999 99999999999999999985
No 413
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=76.30 E-value=44 Score=27.82 Aligned_cols=120 Identities=19% Similarity=0.144 Sum_probs=69.3
Q ss_pred EcCcccHHHHHHHhhCC-CC--eEEEeeh-hhHHHhCCC---------CCCCe-EEeccCCC--CCC---CC--CEEEec
Q 017495 214 VGGGIGVTLGMITSRYP-CI--KGISFDL-PHVLANAPS---------FPGVE-HVGGDMFE--NVP---RG--DAIFLK 272 (370)
Q Consensus 214 vG~G~G~~~~~l~~~~p-~~--~~~~~D~-p~~~~~a~~---------~~rv~-~~~~D~~~--~~p---~~--D~i~~~ 272 (370)
||=|.=.++..|++.++ .. .++.+|. ..+.+.-.. ...+. ....|..+ ... .. |.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 67777788888999877 43 4466665 333333221 11222 23444443 111 12 888875
Q ss_pred ccccCC----Ch-------hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHH
Q 017495 273 WMLHGW----TD-------EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKE 341 (370)
Q Consensus 273 ~vLh~~----~d-------~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e 341 (370)
+=--.. .. .-...+++.+...|+++|.+.|.-.... .++.=+
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~---------------------------py~~W~ 135 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ---------------------------PYDSWN 135 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC---------------------------CCcccc
Confidence 432210 01 1235789999999999999998433221 111113
Q ss_pred HHHHHHhCCCCcceEEecC
Q 017495 342 YEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 342 ~~~ll~~aGf~~v~~~~~~ 360 (370)
+.++.+++||..++..+..
T Consensus 136 i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 136 IEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred HHHHHHhcCCEEEEEecCC
Confidence 5677888999988887764
No 414
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=75.85 E-value=3.7 Score=35.24 Aligned_cols=34 Identities=18% Similarity=0.079 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHCCCCCCCC-cchHHHHHHHHhcCCceec
Q 017495 60 ELLSASKIAARLPTKNPDA-PFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~-~~~l~~~L~~L~~~g~l~~ 97 (370)
-|.|+.|||+.+++ + +..+.+.|+.|...|++..
T Consensus 24 ~~~~~~ela~~~~~----~s~~tv~~~l~~L~~~g~i~~ 58 (199)
T TIGR00498 24 YPPSIREIARAVGL----RSPSAAEEHLKALERKGYIER 58 (199)
T ss_pred CCCcHHHHHHHhCC----CChHHHHHHHHHHHHCCCEec
Confidence 36789999999999 7 8999999999999999996
No 415
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=75.57 E-value=7.9 Score=34.83 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=30.9
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-----CCCeEEEeeh
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-----PCIKGISFDL 239 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~ 239 (370)
+.+...++|+|||.|.++..+.... +...++.+|.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 5677899999999999999999998 5678899996
No 416
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=74.91 E-value=4.4 Score=35.66 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=38.1
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.||+.|... ++-++..+||+++|+ ++..+++-++.|.+.|+++.
T Consensus 187 ~IL~~L~~~-------egrlse~eLAerlGV----SRs~ireAlrkLE~aGvIe~ 230 (251)
T TIGR02787 187 HIFEELDGN-------EGLLVASKIADRVGI----TRSVIVNALRKLESAGVIES 230 (251)
T ss_pred HHHHHhccc-------cccccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 467777652 248999999999999 99999999999999999995
No 417
>PF03551 PadR: Transcriptional regulator PadR-like family; InterPro: IPR005149 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response [].; PDB: 1XMA_B 2ESH_A 2DQL_B 3L9F_C 3ELK_B 4EJO_B 3L7W_A 3HHH_A 1YG2_A 3F8B_A ....
Probab=74.74 E-value=3.6 Score=29.09 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=39.9
Q ss_pred CCCHHHHHHHCCCC----CCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 61 LLSASKIAARLPTK----NPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 61 ~~t~~ela~~~~~~----~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
|.+--+|.+.+.-. -..++..+...|+-|...|+|+....+...|+....|.+|+.++
T Consensus 9 ~~~Gyei~~~l~~~~~~~~~i~~g~lY~~L~~Le~~gli~~~~~~~~~~~~rk~Y~iT~~G~ 70 (75)
T PF03551_consen 9 PMHGYEIKQELEERTGGFWKISPGSLYPALKRLEEEGLIESRWEEEGNGRPRKYYRITEKGR 70 (75)
T ss_dssp -EEHHHHHHHHHHCSTTTEETTHHHHHHHHHHHHHTTSEEEEEEEETTSSEEEEEEESHHHH
T ss_pred CCcHHHHHHHHHHHhCCCcccChhHHHHHHHHHHhCCCEEEeeeccCCCCCCEEEEECHHHH
Confidence 67777777664320 01278889999999999999997532212344466799999886
No 418
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=74.19 E-value=3.6 Score=35.27 Aligned_cols=76 Identities=12% Similarity=0.186 Sum_probs=55.0
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
.+|..-.+-.|+.+|... |.=+.+|++.+|+ .+.++-..|+.|..+|+++..-.+...|++.-.|..
T Consensus 10 dvLGNetRR~Il~lLt~~---------p~yvsEiS~~lgv----sqkAVl~HL~~LE~AGlveS~ie~~~Rg~~rKYY~I 76 (217)
T COG1777 10 DVLGNETRRRILQLLTRR---------PCYVSEISRELGV----SQKAVLKHLRILERAGLVESRIEKIPRGRPRKYYMI 76 (217)
T ss_pred HHHcCcHHHHHHHHHhcC---------chHHHHHHhhcCc----CHHHHHHHHHHHHHcCCchhhccccccCCCcceeec
Confidence 344555667788999987 8899999999999 999999999999999999962111122433345666
Q ss_pred chhhhhhhc
Q 017495 114 APICKFLIK 122 (370)
Q Consensus 114 ~~~~~~l~~ 122 (370)
+...+..+.
T Consensus 77 s~~~rleV~ 85 (217)
T COG1777 77 SRNLRLEVT 85 (217)
T ss_pred cCCeEEEEE
Confidence 665554443
No 419
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=73.95 E-value=6.8 Score=32.92 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=32.6
Q ss_pred CEEEecccccCCCh----------hHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 267 DAIFLKWMLHGWTD----------EHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 267 D~i~~~~vLh~~~d----------~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
|+|++++.||+++. ++..++++++..+|+|+..|+......
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 99999999999865 355678888888888987777766544
No 420
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=73.81 E-value=4.2 Score=36.90 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=39.8
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
...|++.|... +.+++.|||+.+++ ++.-++|=|..|.+.|++.+
T Consensus 19 ~~~Il~~L~~~--------~~vtv~eLa~~l~V----S~~TIRRDL~~Le~~G~l~r 63 (269)
T PRK09802 19 REQIIQRLRQQ--------GSVQVNDLSALYGV----STVTIRNDLAFLEKQGIAVR 63 (269)
T ss_pred HHHHHHHHHHc--------CCEeHHHHHHHHCC----CHHHHHHHHHHHHhCCCeEE
Confidence 44567888776 47999999999999 99999999999999999985
No 421
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=73.65 E-value=4 Score=37.45 Aligned_cols=70 Identities=16% Similarity=0.220 Sum_probs=38.1
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEec----cCCCCC--C-CC-CEEE
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVGG----DMFENV--P-RG-DAIF 270 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~----D~~~~~--p-~~-D~i~ 270 (370)
..++||||+|....=--|..+..++++++.|+ +..++.|++. ++|+++.. +++... + +. |+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 57999999998755433444444899999998 7777776542 56777644 334321 1 22 8888
Q ss_pred ecccccC
Q 017495 271 LKWMLHG 277 (370)
Q Consensus 271 ~~~vLh~ 277 (370)
|+==+|.
T Consensus 183 CNPPFy~ 189 (299)
T PF05971_consen 183 CNPPFYS 189 (299)
T ss_dssp E-----S
T ss_pred cCCcccc
Confidence 8777775
No 422
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=73.26 E-value=9.8 Score=36.88 Aligned_cols=102 Identities=15% Similarity=0.056 Sum_probs=58.0
Q ss_pred CCCeEEEEcCcccH--HHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC---CCC--CC-CEEE
Q 017495 207 GLKVLVDVGGGIGV--TLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE---NVP--RG-DAIF 270 (370)
Q Consensus 207 ~~~~vLDvG~G~G~--~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~---~~p--~~-D~i~ 270 (370)
.+..+.|+|.|.|. .+...+-+.-.-.++.+|. -.+....... ..+.....-+.. +.+ .+ |+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 45678888888664 4444444333335677886 3333332211 112222212222 222 23 9999
Q ss_pred ecccccCCChhHH-HHHH-HHHHHhCCCCcEEEEEeecCC
Q 017495 271 LKWMLHGWTDEHC-LKLL-KNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 271 ~~~vLh~~~d~~~-~~iL-~~~~~~L~pgG~lli~e~~~~ 308 (370)
++++||++..... ..+. .-.++..++|++++++|...+
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 9999999865532 2333 345567789999999987554
No 423
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=73.19 E-value=2.6 Score=29.75 Aligned_cols=32 Identities=22% Similarity=-0.003 Sum_probs=29.5
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCcee
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILR 96 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 96 (370)
.+|..|||+.+|+ ++..++.+++.+...|.+.
T Consensus 32 GlS~kEIAe~LGI----S~~TVk~~l~~~~~~~~~~ 63 (73)
T TIGR03879 32 GKTASEIAEELGR----TEQTVRNHLKGETKAGGLV 63 (73)
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHhcCcccchHH
Confidence 5899999999999 9999999999988888775
No 424
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=73.02 E-value=4.5 Score=25.16 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=26.0
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHH
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLL 89 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L 89 (370)
++..|+..|... +..+..+||+.+|+ ++..+.+=++.|
T Consensus 4 ~D~~Il~~Lq~d--------~r~s~~~la~~lgl----S~~~v~~Ri~rL 41 (42)
T PF13404_consen 4 LDRKILRLLQED--------GRRSYAELAEELGL----SESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHH---------TTS-HHHHHHHHTS-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--------CCccHHHHHHHHCc----CHHHHHHHHHHh
Confidence 455678888776 48999999999999 776665544433
No 425
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=72.74 E-value=3.4 Score=27.41 Aligned_cols=33 Identities=30% Similarity=0.298 Sum_probs=27.9
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
-++++.||++.|+ -...+-.-||-|.++|+++.
T Consensus 4 ~lvas~iAd~~Gi----TRSvIVNALRKleSaGvIes 36 (61)
T PF08222_consen 4 RLVASKIADRVGI----TRSVIVNALRKLESAGVIES 36 (61)
T ss_dssp EE-HHHHHHHHT------HHHHHHHHHHHHHTTSEEE
T ss_pred eehHHHHHHHhCc----cHHHHHHHHHHHHhcCceee
Confidence 5789999999999 88899999999999999995
No 426
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=72.72 E-value=4.1 Score=29.76 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=31.5
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
-+|...|++++++ .-...++.|+.|...|++...
T Consensus 41 ~ITps~lserlkI----~~SlAr~~Lr~L~~kG~Ik~V 74 (86)
T PRK09334 41 IVTPYTLASKYGI----KISVAKKVLRELEKRGVLVLY 74 (86)
T ss_pred EEcHHHHHHHhcc----hHHHHHHHHHHHHHCCCEEEE
Confidence 5899999999999 999999999999999999753
No 427
>PRK09954 putative kinase; Provisional
Probab=72.61 E-value=4.6 Score=38.24 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=38.6
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCcee
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILR 96 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 96 (370)
..|+..|.+. +++|..+||+.+++ +...+++.|+.|...|++.
T Consensus 6 ~~il~~l~~~--------~~~s~~~la~~l~~----s~~~v~~~i~~L~~~g~i~ 48 (362)
T PRK09954 6 KEILAILRRN--------PLIQQNEIADILQI----SRSRVAAHIMDLMRKGRIK 48 (362)
T ss_pred HHHHHHHHHC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCcC
Confidence 4477888776 48999999999999 9999999999999999996
No 428
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=72.58 E-value=5.7 Score=30.80 Aligned_cols=33 Identities=33% Similarity=0.324 Sum_probs=31.7
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
|.|+.|||..+++ +...++-++.-|...|++..
T Consensus 55 ~~SVAEiAA~L~l----PlgVvrVLvsDL~~~G~v~v 87 (114)
T PF05331_consen 55 PLSVAEIAARLGL----PLGVVRVLVSDLADAGLVRV 87 (114)
T ss_pred CccHHHHHHhhCC----CchhhhhhHHHHHhCCCEEE
Confidence 7999999999999 99999999999999999985
No 429
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=72.51 E-value=9.6 Score=30.07 Aligned_cols=87 Identities=22% Similarity=0.254 Sum_probs=42.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCCC---C-CEEEecccccCCChh
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVPR---G-DAIFLKWMLHGWTDE 281 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p~---~-D~i~~~~vLh~~~d~ 281 (370)
+..+|+|||-|.=.-....++.. +..+++.|. +. .+. ..++++.-|+++|..+ + |+|.+.+- ++
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~---~a~--~g~~~v~DDif~P~l~iY~~a~lIYSiRP-----P~ 81 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR---KAP--EGVNFVVDDIFNPNLEIYEGADLIYSIRP-----PP 81 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES-------T
T ss_pred CCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc---ccc--cCcceeeecccCCCHHHhcCCcEEEEeCC-----Ch
Confidence 45699999999664444444433 378899997 54 222 5799999999986432 3 88887643 33
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 282 HCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 282 ~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+....|-++.+.. |.-++|....
T Consensus 82 El~~~il~lA~~v--~adlii~pL~ 104 (127)
T PF03686_consen 82 ELQPPILELAKKV--GADLIIRPLG 104 (127)
T ss_dssp TSHHHHHHHHHHH--T-EEEEE-BT
T ss_pred HHhHHHHHHHHHh--CCCEEEECCC
Confidence 3333344444443 4566664443
No 430
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=72.45 E-value=5.3 Score=35.13 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 58 HGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 58 ~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
||.+++..+||+.+|+ +..-++.-|..|++.|+|+..
T Consensus 36 pG~~l~e~~La~~~gv----SrtPVReAL~rL~~eGlv~~~ 72 (230)
T COG1802 36 PGERLSEEELAEELGV----SRTPVREALRRLEAEGLVEIE 72 (230)
T ss_pred CCCCccHHHHHHHhCC----CCccHHHHHHHHHHCCCeEec
Confidence 4568999999999999 999999999999999999974
No 431
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=71.98 E-value=6.8 Score=35.05 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=25.8
Q ss_pred CCeEEEEcCcccHHHHHHHhhCC--------CCeEEEeeh-hhH
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYP--------CIKGISFDL-PHV 242 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~-p~~ 242 (370)
+.+|+|+|+|+|.++..+++.+. .++++.++. |..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L 62 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYL 62 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHH
Confidence 57999999999999999888643 358888886 443
No 432
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=71.85 E-value=4.7 Score=27.49 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=29.5
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+.|..+|++.+++ +++.++.-|-.|...|++..
T Consensus 27 ~ltl~~i~~~t~l----~~~~Vk~~L~~LiQh~~v~y 59 (62)
T PF08221_consen 27 RLTLREIVRRTGL----SPKQVKKALVVLIQHNLVQY 59 (62)
T ss_dssp SEEHHHHHHHHT------HHHHHHHHHHHHHTTSEEE
T ss_pred CcCHHHHHHHhCC----CHHHHHHHHHHHHHcCCeee
Confidence 8999999999999 99999999999999999985
No 433
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=71.79 E-value=6 Score=34.85 Aligned_cols=49 Identities=20% Similarity=0.227 Sum_probs=36.9
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
+.|.++||+++++ ++.-++..++.|+..|++.+.-..++-|+...+|++
T Consensus 178 g~s~~eIA~~l~i----S~~Tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (239)
T PRK10430 178 EFSTDELANAVNI----SRVSCRKYLIWLVNCHILFTSIHYGVTGRPVYRYRL 226 (239)
T ss_pred CcCHHHHHHHhCc----hHHHHHHHHHHHHhCCEEEEEeeccCCCCCCeeeec
Confidence 6899999999999 999999999999999999643223333433333443
No 434
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=71.68 E-value=9.5 Score=35.82 Aligned_cols=64 Identities=19% Similarity=0.311 Sum_probs=40.8
Q ss_pred CchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC----C----CCeEEEeeh-hhHHH
Q 017495 176 DPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY----P----CIKGISFDL-PHVLA 244 (370)
Q Consensus 176 ~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p----~~~~~~~D~-p~~~~ 244 (370)
.++..+.|-+..+.+.. .....+. .+.+..++|+|+|+|.+...+++.. | .+++..+.. |....
T Consensus 51 Apels~lFGella~~~~----~~wq~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~ 123 (370)
T COG1565 51 APELSQLFGELLAEQFL----QLWQELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRA 123 (370)
T ss_pred chhHHHHHHHHHHHHHH----HHHHHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHH
Confidence 45666666665543221 2222232 3456789999999999998887763 4 567888886 54443
No 435
>PHA02591 hypothetical protein; Provisional
Probab=71.48 E-value=5.1 Score=28.40 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=21.8
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHH
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSL 88 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~ 88 (370)
++|.++||+.+|+ +...+++.|+.
T Consensus 59 GlSqeqIA~~LGV----sqetVrKYL~~ 82 (83)
T PHA02591 59 GFTVEKIASLLGV----SVRKVRRYLES 82 (83)
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHhc
Confidence 6999999999999 99999988864
No 436
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=70.67 E-value=7.2 Score=31.43 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAA 114 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~ 114 (370)
|++|++|||-++|+ ..+.+..-|-++.+-|-|.+. +..| .=+|.++
T Consensus 5 Ga~T~eELA~~FGv----ttRkvaStLa~~ta~Grl~Rv---~q~g--kfRy~iP 50 (155)
T PF07789_consen 5 GAKTAEELAGKFGV----TTRKVASTLAMVTATGRLIRV---NQNG--KFRYCIP 50 (155)
T ss_pred CcccHHHHHHHhCc----chhhhHHHHHHHHhcceeEEe---cCCC--ceEEeCC
Confidence 48999999999999 899999999999999988864 3444 3567765
No 437
>PRK00135 scpB segregation and condensation protein B; Reviewed
Probab=70.62 E-value=10 Score=32.30 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=41.7
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
+.++..++.. +|+|..+|++..|. +. ..+++.|...|+|.+..+....|+ ...|..|+..
T Consensus 93 LEtLaiIay~--------qPiTr~eI~~irGv----~~---~~ii~~L~~~gLI~e~gr~~~~Gr-p~ly~tT~~F 152 (188)
T PRK00135 93 LEVLAIIAYK--------QPITRIEIDEIRGV----NS---DGALQTLLAKGLIKEVGRKEVPGR-PILYGTTDEF 152 (188)
T ss_pred HHHHHHHHHc--------CCcCHHHHHHHHCC----CH---HHHHHHHHHCCCeEEcCcCCCCCC-CeeeehhHHH
Confidence 4467777776 59999999999999 54 788999999999985311111222 3446666554
No 438
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=70.34 E-value=8.1 Score=36.44 Aligned_cols=44 Identities=20% Similarity=0.421 Sum_probs=34.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL 239 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~ 239 (370)
+.+++..+..+.+...++|||.|.|.++..+.-.| ++++.++|-
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIeg 184 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEG 184 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEecc
Confidence 33555555546778899999999999998887765 678888885
No 439
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=70.34 E-value=6.3 Score=33.21 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=30.0
Q ss_pred CCHHHHHHHC-CCCCCCCcchHHHHHHHHhcCCceec
Q 017495 62 LSASKIAARL-PTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 62 ~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.|-.+|+..+ |+ ++..++|.|+.|+..|+|..
T Consensus 71 pSN~~La~r~~G~----s~~tlrR~l~~LveaGLI~r 103 (177)
T PF03428_consen 71 PSNAQLAERLNGM----SERTLRRHLARLVEAGLIVR 103 (177)
T ss_pred cCHHHHHHHHcCC----CHHHHHHHHHHHHHCCCeee
Confidence 4779999999 99 99999999999999999996
No 440
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=70.32 E-value=5 Score=33.30 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.|+|++||++++|. +...++.-|+-|...|++...
T Consensus 40 ~Pmtl~Ei~E~lg~----Sks~vS~~lkkL~~~~lV~~~ 74 (177)
T COG1510 40 KPLTLDEIAEALGM----SKSNVSMGLKKLQDWNLVKKV 74 (177)
T ss_pred CCccHHHHHHHHCC----CcchHHHHHHHHHhcchHHhh
Confidence 49999999999999 999999999999999999964
No 441
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=70.18 E-value=5.5 Score=34.83 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=33.7
Q ss_pred CCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 58 HGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 58 ~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
||..++..+||+.+|+ +..-++.-|+.|++.|+|+..
T Consensus 27 pG~~L~e~eLae~lgV----SRtpVREAL~~L~~eGlv~~~ 63 (224)
T PRK11534 27 PDEKLRMSLLTSRYAL----GVGPLREALSQLVAERLVTVV 63 (224)
T ss_pred CCCcCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEEe
Confidence 3568999999999999 999999999999999999963
No 442
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=70.13 E-value=6.2 Score=36.72 Aligned_cols=43 Identities=9% Similarity=0.247 Sum_probs=36.6
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCcee
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILR 96 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 96 (370)
..|++.|.++ .+.+.++||+.+++ +...+.+.++.|...|+..
T Consensus 7 ~~il~~L~~~--------~~~s~~~LA~~lgv----sr~tV~~~l~~L~~~G~~i 49 (319)
T PRK11886 7 LQLLSLLADG--------DFHSGEQLGEELGI----SRAAIWKHIQTLEEWGLDI 49 (319)
T ss_pred HHHHHHHHcC--------CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCce
Confidence 3566777664 37999999999999 9999999999999999943
No 443
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=69.84 E-value=19 Score=32.68 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=43.9
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCe----EEEeehhhHHHhCCCCCCCeEEeccCCCCCCCCCEEEecccccCCChh
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIK----GISFDLPHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDE 281 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~----~~~~D~p~~~~~a~~~~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~ 281 (370)
.++..||=+|++.|.....|.+.||.++ .+.+|........++.+.|+++.. . +++
T Consensus 57 ~~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l~~v~l~~~----------------f---fte- 116 (294)
T PF01358_consen 57 DGPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEELSNVTLIQR----------------F---FTE- 116 (294)
T ss_dssp TT-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT-TTEEEEES----------------------H-
T ss_pred CCceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhcccCcEEeehh----------------h---CCH-
Confidence 3557999999999999999999998866 888897333222232223333322 1 223
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeecCCCC
Q 017495 282 HCLKLLKNCWEALPENGKVIIVESILPLV 310 (370)
Q Consensus 282 ~~~~iL~~~~~~L~pgG~lli~e~~~~~~ 310 (370)
+.++++++...+ ..|+|.|....++
T Consensus 117 ---e~~~~~~~~~~~-~illISDIRS~~~ 141 (294)
T PF01358_consen 117 ---EYARRLRDKLNL-KILLISDIRSGDP 141 (294)
T ss_dssp ---HHHHHHHHHHTT-EEEEEE-------
T ss_pred ---HHHHHHHhhcCC-CeEEEEecccCCC
Confidence 345566666666 7888888755443
No 444
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=69.70 E-value=30 Score=31.79 Aligned_cols=87 Identities=18% Similarity=0.181 Sum_probs=52.5
Q ss_pred CCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCCCC-CEEEecccccCCChhHH
Q 017495 207 GLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVPRG-DAIFLKWMLHGWTDEHC 283 (370)
Q Consensus 207 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p~~-D~i~~~~vLh~~~d~~~ 283 (370)
+..++|=+|+| .|.++.++++.+.-..++.+|. +.-++.+.... + .|..+....+ |+|+=.-- .
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~---~--i~~~~~~~~g~Dvvid~~G-----~--- 210 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE---V--LDPEKDPRRDYRAIYDASG-----D--- 210 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc---c--cChhhccCCCCCEEEECCC-----C---
Confidence 34567777865 7888888888875444666775 55554444321 1 1111111223 77764321 1
Q ss_pred HHHHHHHHHhCCCCcEEEEEeec
Q 017495 284 LKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 284 ~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
...++.+.+.|+|+|+++++-..
T Consensus 211 ~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 211 PSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred HHHHHHHHHhhhcCcEEEEEeec
Confidence 24577888999999999987653
No 445
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=69.68 E-value=5.1 Score=33.85 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=31.8
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
|+|-++||+.+|+ .+..+.|.|+.|...|++..
T Consensus 143 ~~t~~~iA~~lG~----tretvsR~l~~l~~~g~I~~ 175 (193)
T TIGR03697 143 RLSHQAIAEAIGS----TRVTITRLLGDLRKKKLISI 175 (193)
T ss_pred CCCHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEe
Confidence 7899999999999 99999999999999999985
No 446
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=69.61 E-value=7.1 Score=34.73 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=37.9
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.|.+.|... +.++++|||+.+++ ++.-++|.|..|...|.+..
T Consensus 8 ~Il~~l~~~--------~~~~~~eLa~~l~V----S~~TiRRdL~~L~~~~~l~r 50 (240)
T PRK10411 8 AIVDLLLNH--------TSLTTEALAEQLNV----SKETIRRDLNELQTQGKILR 50 (240)
T ss_pred HHHHHHHHc--------CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 467777765 48999999999999 99999999999999999874
No 447
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=69.48 E-value=5.6 Score=36.10 Aligned_cols=70 Identities=19% Similarity=0.090 Sum_probs=55.1
Q ss_pred hhHHHhCCCC-CCCeEEeccCCC---CCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 240 PHVLANAPSF-PGVEHVGGDMFE---NVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 240 p~~~~~a~~~-~rv~~~~~D~~~---~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
+.+.+.++.. .||.++.+|+.+ ..|.+ |.|++..+=..++|.+...++..|.+-+.||.++++.......
T Consensus 296 ~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRtaae~s 371 (414)
T COG5379 296 EGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTAAEVS 371 (414)
T ss_pred hhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEeccccee
Confidence 3444444433 689999999987 23444 9999999988889999999999999999999999997765443
No 448
>TIGR02719 repress_PhaQ poly-beta-hydroxybutyrate-responsive repressor. Members of this family are transcriptional regulatory proteins found in the vicinity of poly-beta-hydroxybutyrate (PHB) operons in several species of Bacillus. This protein appears to have repressor activity modulated by PHB itself. This protein belongs to the larger PadR family (see pfam03551).
Probab=69.24 E-value=36 Score=27.39 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=49.6
Q ss_pred HHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC---CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCcccc
Q 017495 33 PMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL---PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVER 109 (370)
Q Consensus 33 ~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~---~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~ 109 (370)
.++..-.+++=|+..|..+ |..-=+|.+.+ +. ....+..+.+.|+-|...|+|.....+...|+...
T Consensus 18 ~ql~kg~l~~~IL~~L~~~---------p~hGYeI~q~l~~~g~-~~v~~GtLYp~L~RLE~~GlI~~~~~~~~~gp~RK 87 (138)
T TIGR02719 18 NGAPKNFLVPFLLLCLKDW---------NLHGYKLIQMLMDFGF-SSVDQGNVYRTLRKLEKDNLISSQWDTSAEGPAKR 87 (138)
T ss_pred HHHHHHHHHHHHHHHHccC---------CCCHHHHHHHHHHcCC-CCCCcChHHHHHHHHHHCCCEEEEeeecCCCCCcE
Confidence 3445555555666677665 55555555443 22 12277889999999999999986321222344346
Q ss_pred ceecchhhhhhh
Q 017495 110 VYGAAPICKFLI 121 (370)
Q Consensus 110 ~y~~~~~~~~l~ 121 (370)
.|++|+.++...
T Consensus 88 ~Y~LTe~Gr~~L 99 (138)
T TIGR02719 88 IYSLTDAGEQYL 99 (138)
T ss_pred EEEECHHHHHHH
Confidence 699999987433
No 449
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.03 E-value=80 Score=27.66 Aligned_cols=76 Identities=13% Similarity=0.049 Sum_probs=48.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCC--CeEEEee--hhhHHHhCCCCCCCeEEeccCCCCCCCCCEEEecccccCCChh
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPC--IKGISFD--LPHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDE 281 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D--~p~~~~~a~~~~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~ 281 (370)
+....||-.||..|..+.+|++.|.. ..++..- ++.+.+.+.+ .++.....|+. +++
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-~gl~~~kLDV~------------------~~~ 65 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-FGLKPYKLDVS------------------KPE 65 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-hCCeeEEeccC------------------ChH
Confidence 45678999999999999999998743 4444433 2333333321 23555555543 346
Q ss_pred HHHHHHHHHHHhCCCCcEEEE
Q 017495 282 HCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 282 ~~~~iL~~~~~~L~pgG~lli 302 (370)
++..++..+++- |.|.|-+
T Consensus 66 ~V~~v~~evr~~--~~Gkld~ 84 (289)
T KOG1209|consen 66 EVVTVSGEVRAN--PDGKLDL 84 (289)
T ss_pred HHHHHHHHHhhC--CCCceEE
Confidence 777888888776 7777654
No 450
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=68.66 E-value=6.4 Score=32.10 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=35.3
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCcee
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILR 96 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 96 (370)
-|+++|-.. +.+|-++||+.+|+ +...++++|..|...+++.
T Consensus 5 ~v~d~L~~~--------~~~~dedLa~~l~i----~~n~vRkiL~~L~ed~~~~ 46 (147)
T smart00531 5 LVLDALMRN--------GCVTEEDLAELLGI----KQKQLRKILYLLYDEKLIK 46 (147)
T ss_pred eehHHHHhc--------CCcCHHHHHHHhCC----CHHHHHHHHHHHHhhhcch
Confidence 467777654 38999999999999 9999999999999966554
No 451
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=68.36 E-value=31 Score=30.10 Aligned_cols=100 Identities=19% Similarity=0.215 Sum_probs=59.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCC-C-eEEEeeh-hhHHHhCCCC--------------------------------
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPC-I-KGISFDL-PHVLANAPSF-------------------------------- 249 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~-~~~~~D~-p~~~~~a~~~-------------------------------- 249 (370)
-+.+.++-|-.||.|.++--+.--+++ + .+++-|+ +++++.++++
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl 128 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEAL 128 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 356789999999999888765554443 3 4577787 8888776531
Q ss_pred ----------------CCCeEEeccCCCCCC-------CC-CEEEec---ccccCCCh----hHHHHHHHHHHHhCCCCc
Q 017495 250 ----------------PGVEHVGGDMFENVP-------RG-DAIFLK---WMLHGWTD----EHCLKLLKNCWEALPENG 298 (370)
Q Consensus 250 ----------------~rv~~~~~D~~~~~p-------~~-D~i~~~---~vLh~~~d----~~~~~iL~~~~~~L~pgG 298 (370)
....+...|++++.+ .. |+|+.- .-+-+|.. +-..++|..++.+|.+++
T Consensus 129 ~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 129 ESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 114577888887322 12 888762 12334543 446799999999996667
Q ss_pred EEEEEe
Q 017495 299 KVIIVE 304 (370)
Q Consensus 299 ~lli~e 304 (370)
.+.+++
T Consensus 209 VV~v~~ 214 (246)
T PF11599_consen 209 VVAVSD 214 (246)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 766644
No 452
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=67.83 E-value=9.6 Score=37.15 Aligned_cols=102 Identities=16% Similarity=0.104 Sum_probs=67.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-------CCCC---CCEE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-------NVPR---GDAI 269 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-------~~p~---~D~i 269 (370)
....+|=||-|.|.+...+...+|...++++.+ |.+++.++.+ +|..++-.|-.+ ..++ .|++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 445777788888999999999999999888888 9999988764 233333333332 1112 1777
Q ss_pred Ee------cccccCCChh-HHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 270 FL------KWMLHGWTDE-HCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 270 ~~------~~vLh~~~d~-~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
+. .+.+..-+.. -...+|..++..|+|.|.++|.--+.+
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 65 2223222222 245899999999999999976554443
No 453
>PRK12423 LexA repressor; Provisional
Probab=67.64 E-value=9.6 Score=32.86 Aligned_cols=35 Identities=14% Similarity=0.112 Sum_probs=30.4
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+-|..|||+.+|++ ++..+++.|+.|+..|+|+..
T Consensus 25 ~Ps~~eia~~~g~~---s~~~v~~~l~~L~~~G~l~~~ 59 (202)
T PRK12423 25 PPSLAEIAQAFGFA---SRSVARKHVQALAEAGLIEVV 59 (202)
T ss_pred CCCHHHHHHHhCCC---ChHHHHHHHHHHHHCCCEEec
Confidence 45999999999952 677899999999999999963
No 454
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=67.64 E-value=6 Score=33.99 Aligned_cols=33 Identities=12% Similarity=0.276 Sum_probs=31.6
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
++|..+||+.+|+ .+..+.|.|+.|...|++..
T Consensus 168 ~~t~~~lA~~lG~----tr~tvsR~l~~l~~~gii~~ 200 (211)
T PRK11753 168 KITRQEIGRIVGC----SREMVGRVLKMLEDQGLISA 200 (211)
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEe
Confidence 7899999999999 99999999999999999985
No 455
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=67.59 E-value=10 Score=31.84 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=37.2
Q ss_pred CHHHHHHHC--CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 63 SASKIAARL--PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 63 t~~ela~~~--~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
+.++||+++ ++ +..-++.-|..|...|+++.+ | ++.|..|..+
T Consensus 41 d~~~iak~l~p~i----s~~ev~~sL~~L~~~gli~k~------~--~g~y~~t~~~ 85 (171)
T PF14394_consen 41 DPEWIAKRLRPKI----SAEEVRDSLEFLEKLGLIKKD------G--DGKYVQTDKS 85 (171)
T ss_pred CHHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEC------C--CCcEEEecce
Confidence 899999999 99 999999999999999999963 1 4688887644
No 456
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=67.32 E-value=7 Score=34.11 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 58 HGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 58 ~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
||..++..+||+.+|+ +..-++.-|+.|...|+|+.
T Consensus 31 pG~~L~e~~La~~lgV----SRtpVREAL~~L~~eGLV~~ 66 (221)
T PRK11414 31 PGARLITKNLAEQLGM----SITPVREALLRLVSVNALSV 66 (221)
T ss_pred CCCccCHHHHHHHHCC----CchhHHHHHHHHHHCCCEEe
Confidence 3468899999999999 99999999999999999986
No 457
>COG0640 ArsR Predicted transcriptional regulators [Transcription]
Probab=67.06 E-value=9.9 Score=27.85 Aligned_cols=53 Identities=13% Similarity=0.252 Sum_probs=43.7
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.++....++.++..|... .+.++.+|+..++. ....+.+.|..|...|++...
T Consensus 20 ~~l~~~~r~~il~~l~~~--------~~~~~~~l~~~~~~----~~~~v~~hL~~L~~~glv~~~ 72 (110)
T COG0640 20 KALADPTRLEILSLLAEG--------GELTVGELAEALGL----SQSTVSHHLKVLREAGLVELR 72 (110)
T ss_pred HHhCCHHHHHHHHHHHhc--------CCccHHHHHHHHCC----ChhHHHHHHHHHHHCCCeEEE
Confidence 344444677788888773 26899999999999 999999999999999999973
No 458
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=66.85 E-value=5.4 Score=38.29 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=29.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS 248 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~ 248 (370)
+...|||||.|||.++.-..++..+ +++.+.. ..+.+.+++
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~ark 107 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARK 107 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHH
Confidence 4568999999999999877776533 5777774 556665553
No 459
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=66.81 E-value=7.9 Score=27.47 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=39.4
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..+++.++.. . ..+.+..+|++.++. +++.+-..++.|...|++..
T Consensus 3 ~~~~~Le~I~rs-----R-~~Gi~q~~L~~~~~~----D~r~i~~~~k~L~~~gLI~k 50 (75)
T PF04182_consen 3 IQYCLLERIARS-----R-YNGITQSDLSKLLGI----DPRSIFYRLKKLEKKGLIVK 50 (75)
T ss_pred hHHHHHHHHHhc-----C-CCCEehhHHHHHhCC----CchHHHHHHHHHHHCCCEEE
Confidence 345566777654 2 247899999999999 99999999999999999996
No 460
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=66.76 E-value=6.7 Score=35.21 Aligned_cols=44 Identities=14% Similarity=0.239 Sum_probs=39.5
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
..|++.|.+. +.++++|||+.+++ ++.-+||=|+.|+..|++.+
T Consensus 8 ~~Il~~l~~~--------g~v~v~eLa~~~~V----S~~TIRRDL~~Le~~g~l~R 51 (253)
T COG1349 8 QKILELLKEK--------GKVSVEELAELFGV----SEMTIRRDLNELEEQGLLLR 51 (253)
T ss_pred HHHHHHHHHc--------CcEEHHHHHHHhCC----CHHHHHHhHHHHHHCCcEEE
Confidence 3467888875 48999999999999 99999999999999999996
No 461
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=66.67 E-value=14 Score=33.08 Aligned_cols=68 Identities=16% Similarity=0.080 Sum_probs=51.4
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCCCeEEeccCCCCCC--CC-CEEEeccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFENVP--RG-DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~~p--~~-D~i~~~~v 274 (370)
+.+...-+|+|...|+++-.|.+ -+..++.+|-..+........+|+....|-+.-.| .. |-.+|-.|
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVk--r~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV 279 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVK--RNMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV 279 (358)
T ss_pred hcCCceeeecccCCCccchhhhh--cceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehh
Confidence 34678999999999999999998 46889999975555544455789999999988555 23 65555443
No 462
>PRK13239 alkylmercury lyase; Provisional
Probab=66.52 E-value=6.6 Score=33.87 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=31.3
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLA 90 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~ 90 (370)
+..-|+..|+.| .|.|+++||+.+|. +...++..|+.|.
T Consensus 23 ~~~~llr~la~G--------~pvt~~~lA~~~~~----~~~~v~~~L~~l~ 61 (206)
T PRK13239 23 LLVPLLRLLAKG--------RPVSVTTLAAALGW----PVEEVEAVLEAMP 61 (206)
T ss_pred HHHHHHHHHHcC--------CCCCHHHHHHHhCC----CHHHHHHHHHhCC
Confidence 334467778876 59999999999999 8888888888764
No 463
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=65.72 E-value=6.8 Score=33.40 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
-++|-++||+.+|+ .+..+.|.|+.|...|++..
T Consensus 148 ~~~t~~~iA~~lG~----tretvsR~l~~l~~~g~I~~ 181 (202)
T PRK13918 148 IYATHDELAAAVGS----VRETVTKVIGELSREGYIRS 181 (202)
T ss_pred ecCCHHHHHHHhCc----cHHHHHHHHHHHHHCCCEEc
Confidence 36899999999999 99999999999999999985
No 464
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=65.68 E-value=7.1 Score=33.75 Aligned_cols=36 Identities=28% Similarity=0.301 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 59 GELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 59 ~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
|..++-.+||+.+|+ +..-++.-|+.|...|+|+..
T Consensus 32 G~~L~e~~La~~lgV----SRtpVReAL~~L~~eGlv~~~ 67 (212)
T TIGR03338 32 GAKLNESDIAARLGV----SRGPVREAFRALEEAGLVRNE 67 (212)
T ss_pred CCEecHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEe
Confidence 468999999999999 999999999999999999863
No 465
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=65.13 E-value=5.3 Score=33.99 Aligned_cols=44 Identities=7% Similarity=0.068 Sum_probs=38.7
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.-|++.|... +.+++.+||+.+++ ++.-+||=|..|+..|.+.+
T Consensus 10 ~~Il~~l~~~--------~~~~~~~La~~~~v----S~~TiRRDl~~L~~~g~~~r 53 (185)
T PRK04424 10 KALQELIEEN--------PFITDEELAEKFGV----SIQTIRLDRMELGIPELRER 53 (185)
T ss_pred HHHHHHHHHC--------CCEEHHHHHHHHCc----CHHHHHHHHHHHhcchHHHH
Confidence 3466777776 48999999999999 99999999999999999985
No 466
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=65.09 E-value=6.4 Score=30.67 Aligned_cols=54 Identities=24% Similarity=0.382 Sum_probs=40.8
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCC-CcchHHHHHHHHhcCCceecc
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPD-APFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~-~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+..+.-|++.|.+. +.+.|+++|.+.+.-+.+. +..-+.|-|+.|...|++.+.
T Consensus 7 T~~R~~Il~~l~~~-------~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~ 61 (120)
T PF01475_consen 7 TPQRLAILELLKES-------PEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKI 61 (120)
T ss_dssp HHHHHHHHHHHHHH-------SSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHcC-------CCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEE
Confidence 45677788888876 2489999999887432111 566799999999999999975
No 467
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=64.83 E-value=8.3 Score=37.55 Aligned_cols=92 Identities=14% Similarity=0.075 Sum_probs=52.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEE------Eeeh-hhHHHhCCCCCCCeEEeccCCCCCCCCCEEEecccccCCC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGI------SFDL-PHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWT 279 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~------~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~ 279 (370)
...+|+=||||+=..+.++--+-.++.++ .+|. ...-+.+.+ +.+ ...+..+..+.+|+|++. .|
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~-dGF--~v~~~~Ea~~~ADvVviL-----lP 106 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE-NGF--KVGTYEELIPQADLVINL-----TP 106 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh-cCC--ccCCHHHHHHhCCEEEEc-----CC
Confidence 35899999999655544443333344444 2221 112222211 122 223332334556998874 45
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 280 DEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 280 d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|.....+.+.+...||||..|.+..-+
T Consensus 107 Dt~q~~v~~~i~p~LK~Ga~L~fsHGF 133 (487)
T PRK05225 107 DKQHSDVVRAVQPLMKQGAALGYSHGF 133 (487)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEecCCc
Confidence 555567779999999999999986653
No 468
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=64.69 E-value=11 Score=27.78 Aligned_cols=60 Identities=12% Similarity=0.134 Sum_probs=35.6
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecc
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAA 114 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~ 114 (370)
+|=|.-++..+ ..++..|-+.+|. +.+-+...+.+|...|+..+..++|+.++ .+.|+.+
T Consensus 10 rlyla~li~~~---------~~nvp~L~~~TGm----PrRT~Qd~i~aL~~~~I~~~Fvq~G~R~~-~GyY~i~ 69 (90)
T PF09904_consen 10 RLYLAYLIDSG---------ERNVPALMEATGM----PRRTIQDTIKALPELGIECEFVQDGERNN-AGYYRIS 69 (90)
T ss_dssp HHHHHHHHHHS----------B-HHHHHHHH-------HHHHHHHHHGGGGGT-EEEEE--TTS-S---EEEEE
T ss_pred HHHHHHHHhcC---------CccHHHHHHHhCC----CHhHHHHHHHHhhcCCeEEEEEecCccCC-CCcEEee
Confidence 33344555665 3499999999999 99999999999999999887533332111 3456654
No 469
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=64.53 E-value=11 Score=31.75 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=39.0
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.-|++.|... +-+|=++||..+|+ ...-++++|..|...|++...
T Consensus 21 ~~v~~~l~~k--------ge~tDeela~~l~i----~~~~vrriL~~L~e~~li~~~ 65 (176)
T COG1675 21 VLVVDALLEK--------GELTDEELAELLGI----KKNEVRRILYALYEDGLISYR 65 (176)
T ss_pred hHHHHHHHhc--------CCcChHHHHHHhCc----cHHHHHHHHHHHHhCCceEEE
Confidence 4467787775 26999999999999 999999999999999999963
No 470
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=64.01 E-value=15 Score=30.18 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecC
Q 017495 281 EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 281 ~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
+.-..+++-+++.|.|||+|+| |.+.+. .... ++. -|.......+-..|..+||+.++-+..+
T Consensus 63 ~~E~~l~~~~~~~l~pg~~lfV-eY~~D~----------eT~~---~L~---~G~pp~~TrLG~~Ll~~GFtwfKdWYfP 125 (170)
T PF06557_consen 63 PLEDELYKLFSRYLEPGGRLFV-EYVEDR----------ETRR---QLQ---RGVPPAETRLGFSLLKAGFTWFKDWYFP 125 (170)
T ss_dssp HHHHHHHHHHHTT----SEEEE-E-TT-H----------HHHH---HHH---TT--GGGSHHHHHHHTTT--EEEEEE--
T ss_pred hHHHHHHHHHHHHhhhcCeEEE-EEecCH----------HHHH---HHH---cCCCcccchhHHHHHhCCcEEEeeeecc
Confidence 3346899999999999999987 443321 1111 111 2333345578889999999999977765
No 471
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=63.37 E-value=7.6 Score=34.07 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=31.6
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
|+|.++||+.+|+ .+..+.|.|+.|...|+|..
T Consensus 184 ~lt~~~iA~~lG~----sr~tvsR~l~~l~~~g~I~~ 216 (235)
T PRK11161 184 TMTRGDIGNYLGL----TVETISRLLGRFQKSGMLAV 216 (235)
T ss_pred cccHHHHHHHhCC----cHHHHHHHHHHHHHCCCEEe
Confidence 6899999999999 99999999999999999996
No 472
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=63.30 E-value=33 Score=32.04 Aligned_cols=93 Identities=16% Similarity=0.150 Sum_probs=53.9
Q ss_pred CCCCeEEEEcCc-ccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCCCCCEEEecccccCCChhH
Q 017495 206 DGLKVLVDVGGG-IGVTLGMITSR-YPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEH 282 (370)
Q Consensus 206 ~~~~~vLDvG~G-~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~ 282 (370)
.+..+||=+|+| .|.++..++++ ....+++++|. +.-.+.++..+.. ....+..+. ...|+|+=.-- . ..
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~-~~~~~~~~~-~g~d~viD~~G--~---~~ 234 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET-YLIDDIPED-LAVDHAFECVG--G---RG 234 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce-eehhhhhhc-cCCcEEEECCC--C---Cc
Confidence 456789989976 55566677775 55667888886 5555555432211 111111111 01277663221 0 00
Q ss_pred HHHHHHHHHHhCCCCcEEEEEee
Q 017495 283 CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 283 ~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
....+....+.|+|||+++++-.
T Consensus 235 ~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 235 SQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred cHHHHHHHHHhCcCCcEEEEEee
Confidence 13567888899999999998764
No 473
>PRK01381 Trp operon repressor; Provisional
Probab=62.86 E-value=9.1 Score=28.74 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=30.9
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHH
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLL 89 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L 89 (370)
.+.+++|+..|-.+ ++|-.|||+.+|+ +...+.|--++|
T Consensus 41 l~~R~~I~~~L~~g---------~~sQREIa~~lGv----SiaTITRgsn~L 79 (99)
T PRK01381 41 LGTRVRIVEELLRG---------ELSQREIKQELGV----GIATITRGSNSL 79 (99)
T ss_pred HHHHHHHHHHHHcC---------CcCHHHHHHHhCC----ceeeehhhHHHh
Confidence 46789999999886 7999999999999 655555555544
No 474
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=62.73 E-value=87 Score=25.86 Aligned_cols=89 Identities=13% Similarity=0.009 Sum_probs=41.5
Q ss_pred CCCeEEEEcCcccHHH-HHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCCCCCEEEecccccCCChhHHH
Q 017495 207 GLKVLVDVGGGIGVTL-GMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCL 284 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~-~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~ 284 (370)
...+|+=.|+|+...+ ..++.-.++.-..++|. |.=.-....-.++.++.-+.+.... .|.|+...-.| ..
T Consensus 67 ~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~G~~~PGt~ipI~~p~~l~~~~-pd~vivlaw~y------~~ 139 (160)
T PF08484_consen 67 EGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQGKYLPGTHIPIVSPEELKERK-PDYVIVLAWNY------KD 139 (160)
T ss_dssp TT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGTTEE-TTT--EEEEGGG--SS---SEEEES-GGG------HH
T ss_pred cCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhcCcccCCCCCeECCHHHHhhCC-CCEEEEcChhh------HH
Confidence 4578999999977665 45555445544455664 3211111111346666665543211 16665533222 24
Q ss_pred HHHHHHHHhCCCCcEEEE
Q 017495 285 KLLKNCWEALPENGKVII 302 (370)
Q Consensus 285 ~iL~~~~~~L~pgG~lli 302 (370)
.|++++.+.++.||++++
T Consensus 140 EI~~~~~~~~~~gg~fi~ 157 (160)
T PF08484_consen 140 EIIEKLREYLERGGKFIV 157 (160)
T ss_dssp HHHHHTHHHHHTT-EEEE
T ss_pred HHHHHHHHHHhcCCEEEE
Confidence 678888888899999987
No 475
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=62.46 E-value=6.9 Score=29.84 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=31.8
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
-+|...||+++++ .-...++.|+.|.+.|+|...
T Consensus 59 ~ITp~~lserlkI----~~SlAr~~Lr~L~~kG~Ik~V 92 (105)
T PF03297_consen 59 LITPSVLSERLKI----NGSLARKALRELESKGLIKPV 92 (105)
T ss_dssp CECHHHHHHHHCC----SCHHHHHHHHHHHHCCSSEEE
T ss_pred EeeHHHHHHhHhh----HHHHHHHHHHHHHHCCCEEEE
Confidence 5899999999999 999999999999999999864
No 476
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=62.45 E-value=9.3 Score=31.84 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=38.3
Q ss_pred CCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 62 LSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 62 ~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
.|..+||+.+++ +..-+.|.+..|...++|.+.. .+.|..+|...
T Consensus 76 ~t~~~ia~~l~i----S~~Tv~r~ik~L~e~~iI~k~~--------~G~Y~iNP~~~ 120 (165)
T PF05732_consen 76 ATQKEIAEKLGI----SKPTVSRAIKELEEKNIIKKIR--------NGAYMINPNFF 120 (165)
T ss_pred eeHHHHHHHhCC----CHHHHHHHHHHHHhCCcEEEcc--------CCeEEECcHHh
Confidence 588999999999 9999999999999999999631 47788887543
No 477
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=61.93 E-value=11 Score=28.74 Aligned_cols=81 Identities=23% Similarity=0.245 Sum_probs=45.0
Q ss_pred CcccHHHHHHHhhC--CCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCC--C-----CCCCEEEecccccCCChhHHHH
Q 017495 216 GGIGVTLGMITSRY--PCIKGISFDL-PHVLANAPSFPGVEHVGGDMFEN--V-----PRGDAIFLKWMLHGWTDEHCLK 285 (370)
Q Consensus 216 ~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~--~-----p~~D~i~~~~vLh~~~d~~~~~ 285 (370)
||.|.++..+++.+ .+..++++|. ++.++.++.. .+.++.||..++ + ..+|.+++..- +|+...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~- 77 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-GVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENL- 77 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-TSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHH-
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-ccccccccchhhhHHhhcCccccCEEEEccC----CHHHHH-
Confidence 34455555555543 3457899987 7777666543 388999999873 1 12266555321 233333
Q ss_pred HHHHHHHhCCCCcEEEE
Q 017495 286 LLKNCWEALPENGKVII 302 (370)
Q Consensus 286 iL~~~~~~L~pgG~lli 302 (370)
.+-...+.+.|..+++.
T Consensus 78 ~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 78 LIALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHCCCCeEEE
Confidence 33344455566666665
No 478
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=61.92 E-value=11 Score=30.72 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 32 LPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 32 ~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
..+++.+...-.||+.|..+ .+|.+||.+.+|- +. ++-|.+|-..|+++.
T Consensus 10 ll~~f~s~~~kkV~~~Ls~~---------W~T~~El~e~~G~----d~---~~~L~~LkK~gLiE~ 59 (160)
T PF09824_consen 10 LLQTFNSEVYKKVYDELSKG---------WMTEEELEEKYGK----DV---RESLLILKKGGLIES 59 (160)
T ss_pred HHHHhCCHHHHHHHHHHHhc---------cCCHHHHHHHHCc----CH---HHHHHHHHHcCchhh
Confidence 34566667778899999997 9999999999998 54 788899999999984
No 479
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=61.44 E-value=8.7 Score=33.77 Aligned_cols=33 Identities=24% Similarity=0.176 Sum_probs=31.3
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
++|-++||+.+|+ .+..+.|.|+.|...|+|..
T Consensus 179 ~lt~~~IA~~lGi----sretlsR~L~~L~~~GlI~~ 211 (230)
T PRK09391 179 PMSRRDIADYLGL----TIETVSRALSQLQDRGLIGL 211 (230)
T ss_pred cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEe
Confidence 6889999999999 99999999999999999985
No 480
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=61.24 E-value=6.6 Score=24.10 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHH
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLL 89 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L 89 (370)
.+.++++||+.+|+ ++..+.|..+..
T Consensus 7 ~~~~l~~iA~~~g~----S~~~f~r~Fk~~ 32 (42)
T PF00165_consen 7 QKLTLEDIAEQAGF----SPSYFSRLFKKE 32 (42)
T ss_dssp SS--HHHHHHHHTS-----HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCC----CHHHHHHHHHHH
Confidence 47999999999999 999999988854
No 481
>PRK00215 LexA repressor; Validated
Probab=60.92 E-value=12 Score=32.27 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.+.|..|||+.+|+| +...+.++|+.|...|+++..
T Consensus 22 ~~~s~~ela~~~~~~---~~~tv~~~l~~L~~~g~i~~~ 57 (205)
T PRK00215 22 YPPSRREIADALGLR---SPSAVHEHLKALERKGFIRRD 57 (205)
T ss_pred CCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCCCEEeC
Confidence 368999999999984 678899999999999999863
No 482
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=59.88 E-value=15 Score=29.02 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=37.2
Q ss_pred HHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCe
Q 017495 284 LKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNS 363 (370)
Q Consensus 284 ~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~ 363 (370)
..+++++++.++|||.+.-... ....++.|.++||.+.+....++.-
T Consensus 70 ~e~~~~l~~~~~~~~~l~Tys~---------------------------------a~~Vr~~L~~aGF~v~~~~g~g~Kr 116 (124)
T PF05430_consen 70 EELFKKLARLSKPGGTLATYSS---------------------------------AGAVRRALQQAGFEVEKVPGFGRKR 116 (124)
T ss_dssp HHHHHHHHHHEEEEEEEEES-----------------------------------BHHHHHHHHHCTEEEEEEE-STTSS
T ss_pred HHHHHHHHHHhCCCcEEEEeec---------------------------------hHHHHHHHHHcCCEEEEcCCCCCcc
Confidence 4689999999999997764110 1247889999999987766665544
Q ss_pred eEEEEeC
Q 017495 364 WVMEFHK 370 (370)
Q Consensus 364 ~~~e~~k 370 (370)
-++.+.|
T Consensus 117 ~~~~a~~ 123 (124)
T PF05430_consen 117 EMLRAVK 123 (124)
T ss_dssp EEEEEEC
T ss_pred hheEEEc
Confidence 4555443
No 483
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=59.56 E-value=23 Score=35.72 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCe-EEEeeh
Q 017495 191 SALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIK-GISFDL 239 (370)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~ 239 (370)
+.+-+-++-..|.=+.+...|||+||..|.+..-.++..|--+ ++++|+
T Consensus 28 saFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl 77 (780)
T KOG1098|consen 28 SAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDL 77 (780)
T ss_pred HHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeee
Confidence 3333445556665234678999999999999998888888544 688897
No 484
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=59.55 E-value=13 Score=23.19 Aligned_cols=23 Identities=30% Similarity=0.276 Sum_probs=16.3
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHH
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLS 87 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~ 87 (370)
+.|..+||+.+|. ++.-+.+.|+
T Consensus 20 G~s~~~IA~~lg~----s~sTV~relk 42 (44)
T PF13936_consen 20 GMSIREIAKRLGR----SRSTVSRELK 42 (44)
T ss_dssp ---HHHHHHHTT------HHHHHHHHH
T ss_pred CCCHHHHHHHHCc----CcHHHHHHHh
Confidence 5999999999999 9888888775
No 485
>COG4901 Ribosomal protein S25 [Translation, ribosomal structure and biogenesis]
Probab=59.52 E-value=11 Score=28.31 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=31.8
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
-+|.-.||.+.|+ +-...+..||.|...|++...
T Consensus 59 ~VTpy~la~r~gI----~~SvAr~vLR~LeeeGvv~lv 92 (107)
T COG4901 59 VVTPYVLASRYGI----NGSVARIVLRHLEEEGVVQLV 92 (107)
T ss_pred eecHHHHHHHhcc----chHHHHHHHHHHHhCCceeee
Confidence 6899999999999 999999999999999999864
No 486
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=59.11 E-value=13 Score=26.79 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
.++|=++||+.+|+ +..++....+.|...|+=.+.. . ...|++...
T Consensus 18 ~~~SGe~La~~Lgi----SRtaVwK~Iq~Lr~~G~~I~s~--~-----~kGY~L~~~ 63 (79)
T COG1654 18 NFVSGEKLAEELGI----SRTAVWKHIQQLREEGVDIESV--R-----GKGYLLPQL 63 (79)
T ss_pred CcccHHHHHHHHCc----cHHHHHHHHHHHHHhCCceEec--C-----CCceeccCc
Confidence 38999999999999 9999999999999999866531 1 246777643
No 487
>PRK10225 DNA-binding transcriptional repressor UxuR; Provisional
Probab=58.94 E-value=12 Score=33.59 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=33.0
Q ss_pred CCCCC-CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 58 HGELL-SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 58 ~~~~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
||..+ +-.+||+.+|+ +..-++.-|+.|.+.|+|+..
T Consensus 29 pG~~LpsE~eLa~~~gV----SRtpVREAL~~L~~eGlV~~~ 66 (257)
T PRK10225 29 PGERLPPEREIAEMLDV----TRTVVREALIMLEIKGLVEVR 66 (257)
T ss_pred CCCcCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 34578 68899999999 999999999999999999863
No 488
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=58.83 E-value=12 Score=31.23 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=41.4
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCC-CCcchHHHHHHHHhcCCceecc
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNP-DAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~-~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+-.+.-|++.|... .+++|+++|.+.+.-..+ .+..-+.|.|+.|+..|+|.+.
T Consensus 25 T~qR~~IL~~l~~~-------~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 25 TPQRLEVLRLMSLQ-------PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred CHHHHHHHHHHHhc-------CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 45677788888764 248999999988753211 1677899999999999999974
No 489
>PRK09990 DNA-binding transcriptional regulator GlcC; Provisional
Probab=58.82 E-value=12 Score=33.42 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=33.3
Q ss_pred CCCCC-CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 58 HGELL-SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 58 ~~~~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
||..+ +-.+||+.+|+ +..-++.-|+.|...|+|+..
T Consensus 27 pG~~LPsE~eLa~~~gV----SRtpVREAL~~L~~eGlV~~~ 64 (251)
T PRK09990 27 VGQALPSERRLCEKLGF----SRSALREGLTVLRGRGIIETA 64 (251)
T ss_pred CCCcCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 34678 78899999999 999999999999999999963
No 490
>PRK09464 pdhR transcriptional regulator PdhR; Reviewed
Probab=58.70 E-value=12 Score=33.41 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=32.7
Q ss_pred CCCC-CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 59 GELL-SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 59 ~~~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
|..+ +-.+||+.+|+ +..-++.-|+.|.+.|+|+..
T Consensus 31 G~~LpsE~eLa~~lgV----SRtpVREAL~~L~~eGlv~~~ 67 (254)
T PRK09464 31 GEKLPPERELAKQFDV----SRPSLREAIQRLEAKGLLLRR 67 (254)
T ss_pred CCcCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 3577 89999999999 999999999999999999963
No 491
>COG1386 scpB Chromosome segregation and condensation protein B [DNA replication, recombination and repair]
Probab=58.54 E-value=25 Score=29.86 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=44.1
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
.+.++..++-. +|+|..+|.+.-|. ...++++.|.+.|+|++..+....|+ .-.|..|+..
T Consensus 94 alEtLAiIAY~--------QPiTR~eI~~iRGv-------~~~~~i~~L~e~glI~~~g~~~~~Gr-p~ly~tT~~F 154 (184)
T COG1386 94 ALETLAIIAYK--------QPVTRSEIEEIRGV-------AVSQVISTLLERGLIREVGRRDTPGR-PYLYGTTEKF 154 (184)
T ss_pred HHHHHHHHHHc--------CCccHHHHHHHhCc-------cHHHHHHHHHHCCCeEecCCCCCCCC-ceeeeccHHH
Confidence 45567777776 69999999999998 45568999999999997532212343 3557777654
No 492
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=58.25 E-value=34 Score=31.96 Aligned_cols=94 Identities=13% Similarity=0.165 Sum_probs=58.8
Q ss_pred CCCCCeEEEEc--CcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCC---CCeEEeccCCCC---CC--CC-CEEEecc
Q 017495 205 FDGLKVLVDVG--GGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFP---GVEHVGGDMFEN---VP--RG-DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~---rv~~~~~D~~~~---~p--~~-D~i~~~~ 273 (370)
++...+||=.| +|.|.++.+|++......++....++-.+.+++.. -+.+...|+.+. .. .+ |+|+-.-
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 66788999888 56789999999998653333333333222333321 233444444331 11 23 8887532
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
- ...+.+..+.|+++|+++.+-...
T Consensus 220 G---------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 220 G---------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred C---------HHHHHHHHHHhccCCEEEEEecCC
Confidence 1 356778899999999999988765
No 493
>PF13551 HTH_29: Winged helix-turn helix
Probab=58.14 E-value=10 Score=28.73 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=26.5
Q ss_pred CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCc
Q 017495 63 SASKIAARLPTKNPDAPFLLDRMLSLLASYDI 94 (370)
Q Consensus 63 t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~ 94 (370)
|+.++|+.+|+ ++.-+.+|++.....|+
T Consensus 14 ~~~~ia~~lg~----s~~Tv~r~~~~~~~~G~ 41 (112)
T PF13551_consen 14 TIAEIARRLGI----SRRTVYRWLKRYREGGI 41 (112)
T ss_pred cHHHHHHHHCc----CHHHHHHHHHHHHcccH
Confidence 69999999999 99999999999999994
No 494
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=57.86 E-value=68 Score=29.88 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=53.6
Q ss_pred CCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEe---ccCCC-CC-CCC-CEEEecccccCC
Q 017495 207 GLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVG---GDMFE-NV-PRG-DAIFLKWMLHGW 278 (370)
Q Consensus 207 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~---~D~~~-~~-p~~-D~i~~~~vLh~~ 278 (370)
+..+||=+|+| .|.++.++++.....++++.|. ++-.+.+++..--.++. .++.+ .. ..+ |+|+-..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~----- 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS----- 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC-----
Confidence 45688878776 6677778888764446777875 66666655432111111 11111 01 112 7765432
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 279 TDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 279 ~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.. ...++.+.++|+|||+++++..
T Consensus 244 G~---~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 GH---PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CC---HHHHHHHHHHhhcCCEEEEEcc
Confidence 11 2456778899999999999864
No 495
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=57.82 E-value=23 Score=31.59 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
.++.-+|||+.++- +|-.+|-.+..|-++|+++- .+|+ .+.|..|..+
T Consensus 24 r~IKgeeIA~~l~r----npGTVRNqmq~LkaLgLVeg-----vpGP-kGGY~PT~kA 71 (294)
T COG2524 24 RPIKGEEIAEVLNR----NPGTVRNQMQSLKALGLVEG-----VPGP-KGGYKPTSKA 71 (294)
T ss_pred CCcchHHHHHHHcc----CcchHHHHHHHHHhcCcccc-----ccCC-CCCccccHHH
Confidence 48999999999999 99999999999999999985 4454 5788887655
No 496
>PTZ00357 methyltransferase; Provisional
Probab=57.52 E-value=27 Score=35.82 Aligned_cols=90 Identities=16% Similarity=0.084 Sum_probs=55.8
Q ss_pred CeEEEEcCcccHHHHHHHhhCC----CCeEEEeeh-hhHH--HhCC--CC-----------CCCeEEeccCCC-CCC---
Q 017495 209 KVLVDVGGGIGVTLGMITSRYP----CIKGISFDL-PHVL--ANAP--SF-----------PGVEHVGGDMFE-NVP--- 264 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p----~~~~~~~D~-p~~~--~~a~--~~-----------~rv~~~~~D~~~-~~p--- 264 (370)
..|+-+|+|-|-+....++... .+++++++. |... ...+ .. ++|+++..|+.+ ..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 4699999999988877666643 456777775 4421 1111 11 248999999988 322
Q ss_pred ----------CCCEEEecccccCCChhH-HHHHHHHHHHhCCC----CcE
Q 017495 265 ----------RGDAIFLKWMLHGWTDEH-CLKLLKNCWEALPE----NGK 299 (370)
Q Consensus 265 ----------~~D~i~~~~vLh~~~d~~-~~~iL~~~~~~L~p----gG~ 299 (370)
..|+|++ ..|--|.|.+ ....|..+.+.||+ +|.
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 1388765 3333344443 23567777777776 665
No 497
>PRK10736 hypothetical protein; Provisional
Probab=57.33 E-value=15 Score=34.93 Aligned_cols=44 Identities=9% Similarity=-0.006 Sum_probs=38.3
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
..|++.|... |+++++|++++++ +...+...|-.|.-.|+++..
T Consensus 311 ~~v~~~l~~~---------~~~iD~L~~~~~l----~~~~v~~~L~~LEl~G~v~~~ 354 (374)
T PRK10736 311 PELLANVGDE---------VTPVDVVAERAGQ----PVPEVVTQLLELELAGWIAAV 354 (374)
T ss_pred HHHHHhcCCC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEEc
Confidence 3577777654 8999999999999 999999999999999999963
No 498
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=57.28 E-value=58 Score=31.14 Aligned_cols=91 Identities=12% Similarity=0.055 Sum_probs=56.3
Q ss_pred eEEEEcCcccHHHHHHHhhCCCCeEEEeeh--h-hH-HHhCCCCCCC---eEEeccCCCCCCCC-CEEEecccccCCChh
Q 017495 210 VLVDVGGGIGVTLGMITSRYPCIKGISFDL--P-HV-LANAPSFPGV---EHVGGDMFENVPRG-DAIFLKWMLHGWTDE 281 (370)
Q Consensus 210 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--p-~~-~~~a~~~~rv---~~~~~D~~~~~p~~-D~i~~~~vLh~~~d~ 281 (370)
+||=|+=..|.+++.|+...|. ...|. . .. ..+... .++ .+...+..++.|.+ |+|++..-= +-.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~---~~~ds~~~~~~~~~n~~~-n~~~~~~~~~~~~~~~~~~~~d~vl~~~PK---~~~ 119 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY---SIGDSYISELATRENLRL-NGIDESSVKFLDSTADYPQQPGVVLIKVPK---TLA 119 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC---eeehHHHHHHHHHHHHHH-cCCCcccceeecccccccCCCCEEEEEeCC---CHH
Confidence 8999999999999999965553 22452 1 11 111111 112 12333444456665 888774211 123
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 282 HCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 282 ~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.....|..+.+.|+||+.+++.+...
T Consensus 120 ~l~~~l~~l~~~l~~~~~ii~g~~~k 145 (378)
T PRK15001 120 LLEQQLRALRKVVTSDTRIIAGAKAR 145 (378)
T ss_pred HHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 56688999999999999988766543
No 499
>PRK10421 DNA-binding transcriptional repressor LldR; Provisional
Probab=57.26 E-value=13 Score=33.19 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=32.6
Q ss_pred CCCCC-CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 58 HGELL-SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 58 ~~~~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
||..+ +-.+||+.+|+ +..-++.-|+.|.+.|+|+.
T Consensus 22 pG~~LpsE~eLae~~gV----SRtpVREAL~~Le~~GlV~~ 58 (253)
T PRK10421 22 AGMKLPAERQLAMQLGV----SRNSLREALAKLVSEGVLLS 58 (253)
T ss_pred CCCcCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEE
Confidence 34578 68899999999 99999999999999999986
No 500
>PRK09462 fur ferric uptake regulator; Provisional
Probab=57.12 E-value=17 Score=29.60 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=41.0
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCC-CCcchHHHHHHHHhcCCceecc
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNP-DAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~-~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+-.+.-|++.|... .+.++|++||-+.+.-+.+ .+..-+.|.|+.|+..|+|.+.
T Consensus 16 T~qR~~Il~~l~~~------~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~ 71 (148)
T PRK09462 16 TLPRLKILEVLQEP------DNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRH 71 (148)
T ss_pred CHHHHHHHHHHHhC------CCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 45667788888752 1248999999988743222 1678899999999999999864
Done!