Query 017495
Match_columns 370
No_of_seqs 179 out of 2056
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 15:21:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017495.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017495hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p9c_A Caffeic acid O-methyltr 100.0 6.3E-54 2.1E-58 405.6 37.3 351 12-370 13-364 (364)
2 4a6d_A Hydroxyindole O-methylt 100.0 1.9E-54 6.5E-59 407.5 32.0 329 17-370 6-345 (353)
3 3reo_A (ISO)eugenol O-methyltr 100.0 2.5E-53 8.6E-58 402.2 37.5 353 12-370 14-366 (368)
4 3lst_A CALO1 methyltransferase 100.0 7.9E-49 2.7E-53 369.0 32.6 325 15-370 18-347 (348)
5 3gwz_A MMCR; methyltransferase 100.0 8.5E-49 2.9E-53 371.5 29.4 330 10-370 29-368 (369)
6 1fp2_A Isoflavone O-methyltran 100.0 2.7E-48 9.3E-53 366.0 31.8 347 1-370 1-352 (352)
7 1zg3_A Isoflavanone 4'-O-methy 100.0 1.2E-47 4.1E-52 362.4 31.6 342 16-370 7-358 (358)
8 1fp1_D Isoliquiritigenin 2'-O- 100.0 2.4E-47 8.3E-52 362.1 32.4 345 18-370 21-372 (372)
9 3i53_A O-methyltransferase; CO 100.0 2.5E-48 8.6E-53 363.4 24.6 315 22-370 8-331 (332)
10 2ip2_A Probable phenazine-spec 100.0 6.4E-47 2.2E-51 354.2 31.4 319 18-370 7-333 (334)
11 1qzz_A RDMB, aclacinomycin-10- 100.0 5.7E-45 1.9E-49 346.2 23.9 337 1-370 1-355 (374)
12 3dp7_A SAM-dependent methyltra 100.0 1.2E-44 4.2E-49 342.2 25.0 322 18-370 14-354 (363)
13 1tw3_A COMT, carminomycin 4-O- 100.0 2.5E-44 8.7E-49 340.0 25.3 324 17-370 17-355 (360)
14 2r3s_A Uncharacterized protein 100.0 5.6E-43 1.9E-47 327.5 29.6 314 21-369 8-333 (335)
15 1x19_A CRTF-related protein; m 100.0 6.7E-42 2.3E-46 323.2 30.8 314 16-370 27-358 (359)
16 3mcz_A O-methyltransferase; ad 100.0 4.7E-42 1.6E-46 323.5 28.8 307 23-370 28-348 (352)
17 4gek_A TRNA (CMO5U34)-methyltr 99.8 1.6E-20 5.6E-25 168.5 15.6 164 205-370 68-256 (261)
18 3dtn_A Putative methyltransfer 99.8 1.9E-19 6.6E-24 158.9 17.2 174 196-370 33-225 (234)
19 3dlc_A Putative S-adenosyl-L-m 99.8 3.5E-19 1.2E-23 155.2 7.1 169 195-369 33-213 (219)
20 3dh0_A SAM dependent methyltra 99.8 7.1E-18 2.4E-22 147.2 14.2 155 196-370 27-192 (219)
21 3hnr_A Probable methyltransfer 99.8 1.7E-17 5.7E-22 145.0 16.1 164 197-370 36-211 (220)
22 3ujc_A Phosphoethanolamine N-m 99.7 1.2E-17 4.2E-22 150.0 13.8 156 195-360 44-207 (266)
23 3ou2_A SAM-dependent methyltra 99.7 2.2E-17 7.4E-22 143.8 14.5 160 196-359 35-205 (218)
24 3dli_A Methyltransferase; PSI- 99.7 4.2E-17 1.4E-21 144.6 15.7 152 194-360 28-185 (240)
25 1vl5_A Unknown conserved prote 99.7 1.1E-17 3.8E-22 150.1 11.9 154 195-359 26-190 (260)
26 1ve3_A Hypothetical protein PH 99.7 3.8E-18 1.3E-22 149.7 8.3 161 206-370 37-226 (227)
27 3pfg_A N-methyltransferase; N, 99.7 2.3E-17 7.8E-22 148.3 11.4 163 206-370 49-248 (263)
28 1kpg_A CFA synthase;, cyclopro 99.7 9.9E-17 3.4E-21 146.0 15.6 162 195-359 53-228 (287)
29 3bus_A REBM, methyltransferase 99.7 8.2E-17 2.8E-21 145.4 14.9 157 195-360 50-217 (273)
30 2o57_A Putative sarcosine dime 99.7 1.1E-16 3.7E-21 146.4 14.5 154 195-359 67-234 (297)
31 1xtp_A LMAJ004091AAA; SGPP, st 99.7 2.3E-17 7.8E-22 147.3 9.6 149 196-360 83-239 (254)
32 1xxl_A YCGJ protein; structura 99.7 1.1E-16 3.8E-21 141.8 13.5 154 195-359 10-174 (239)
33 3hem_A Cyclopropane-fatty-acyl 99.7 1.9E-16 6.5E-21 145.3 15.2 163 195-360 61-244 (302)
34 3vc1_A Geranyl diphosphate 2-C 99.7 2.6E-16 8.8E-21 145.1 16.0 162 187-359 97-269 (312)
35 3h2b_A SAM-dependent methyltra 99.7 3.5E-17 1.2E-21 141.2 8.6 144 208-367 42-191 (203)
36 3ege_A Putative methyltransfer 99.7 5.3E-16 1.8E-20 139.3 16.0 152 195-359 23-178 (261)
37 1nkv_A Hypothetical protein YJ 99.7 1.4E-16 4.9E-21 142.3 12.2 153 195-359 25-187 (256)
38 3ocj_A Putative exported prote 99.7 1E-16 3.5E-21 147.3 11.4 165 205-370 116-303 (305)
39 3bxo_A N,N-dimethyltransferase 99.7 1.2E-16 4E-21 141.2 11.3 163 206-370 39-238 (239)
40 2fk8_A Methoxy mycolic acid sy 99.7 5.1E-16 1.8E-20 143.4 15.9 162 195-359 79-254 (318)
41 3mgg_A Methyltransferase; NYSG 99.7 9E-17 3.1E-21 145.4 10.5 153 205-359 35-198 (276)
42 3f4k_A Putative methyltransfer 99.7 2E-16 6.7E-21 141.5 12.3 152 196-360 35-197 (257)
43 3e23_A Uncharacterized protein 99.7 1.5E-16 5.1E-21 138.1 10.7 138 205-359 41-182 (211)
44 3l8d_A Methyltransferase; stru 99.7 7.3E-16 2.5E-20 136.4 15.3 143 205-359 51-200 (242)
45 3i9f_A Putative type 11 methyl 99.7 9.3E-17 3.2E-21 134.4 8.9 146 198-369 9-158 (170)
46 3kkz_A Uncharacterized protein 99.7 2E-16 7E-21 142.4 11.4 151 197-360 36-197 (267)
47 2p7i_A Hypothetical protein; p 99.7 2.9E-16 1E-20 139.3 12.1 149 205-359 40-199 (250)
48 3g2m_A PCZA361.24; SAM-depende 99.7 2.7E-16 9.4E-21 144.0 12.0 173 193-369 70-290 (299)
49 2ex4_A Adrenal gland protein A 99.7 1.1E-16 3.7E-21 142.0 9.0 138 207-360 79-226 (241)
50 2qe6_A Uncharacterized protein 99.7 1.1E-15 3.7E-20 138.1 15.4 140 207-355 77-238 (274)
51 1pjz_A Thiopurine S-methyltran 99.7 2.3E-16 8E-21 136.2 10.3 141 197-359 13-176 (203)
52 3jwg_A HEN1, methyltransferase 99.7 4.9E-16 1.7E-20 135.6 12.4 150 197-355 20-188 (219)
53 3gu3_A Methyltransferase; alph 99.7 2.9E-16 9.9E-21 142.8 11.3 161 196-358 11-189 (284)
54 4fsd_A Arsenic methyltransfera 99.7 4.9E-16 1.7E-20 147.3 12.7 144 206-358 82-250 (383)
55 3lcc_A Putative methyl chlorid 99.7 3.7E-16 1.3E-20 138.0 10.5 132 208-360 67-208 (235)
56 3jwh_A HEN1; methyltransferase 99.6 4.2E-16 1.4E-20 135.9 10.4 143 205-355 27-188 (217)
57 2qm3_A Predicted methyltransfe 99.6 2E-15 6.9E-20 142.5 14.5 217 43-306 47-279 (373)
58 3ccf_A Cyclopropane-fatty-acyl 99.6 1.3E-15 4.3E-20 138.1 12.2 153 197-359 48-210 (279)
59 3bkw_A MLL3908 protein, S-aden 99.6 1.3E-15 4.4E-20 134.8 11.8 159 197-359 34-214 (243)
60 3bkx_A SAM-dependent methyltra 99.6 2.8E-15 9.4E-20 135.4 13.7 161 196-359 33-219 (275)
61 3sm3_A SAM-dependent methyltra 99.6 2.9E-15 1E-19 131.7 13.5 150 205-359 28-207 (235)
62 2p35_A Trans-aconitate 2-methy 99.6 2.3E-15 7.9E-20 134.6 11.5 151 197-354 24-185 (259)
63 3g5l_A Putative S-adenosylmeth 99.6 1.6E-15 5.4E-20 135.3 10.1 159 197-359 35-216 (253)
64 3e8s_A Putative SAM dependent 99.6 1.9E-15 6.6E-20 132.1 10.4 153 197-358 43-208 (227)
65 4htf_A S-adenosylmethionine-de 99.6 3.1E-15 1.1E-19 136.0 12.0 156 196-360 59-233 (285)
66 3cgg_A SAM-dependent methyltra 99.6 6.4E-15 2.2E-19 125.5 13.2 132 197-359 38-175 (195)
67 2yqz_A Hypothetical protein TT 99.6 4.2E-15 1.4E-19 133.2 11.9 147 205-358 37-195 (263)
68 3d2l_A SAM-dependent methyltra 99.6 4.9E-15 1.7E-19 131.1 12.2 96 206-304 32-137 (243)
69 1y8c_A S-adenosylmethionine-de 99.6 2.4E-15 8.1E-20 133.3 10.1 162 207-370 37-244 (246)
70 2zfu_A Nucleomethylin, cerebra 99.6 7.6E-15 2.6E-19 127.6 12.4 132 196-370 56-190 (215)
71 2xvm_A Tellurite resistance pr 99.6 6E-15 2.1E-19 126.3 11.6 142 197-359 23-173 (199)
72 3g07_A 7SK snRNA methylphospha 99.6 7.6E-16 2.6E-20 140.6 5.7 145 207-359 46-269 (292)
73 3ggd_A SAM-dependent methyltra 99.6 5.2E-15 1.8E-19 131.3 10.8 149 205-358 54-218 (245)
74 1vlm_A SAM-dependent methyltra 99.6 1.3E-14 4.3E-19 126.7 12.7 136 208-359 48-188 (219)
75 2p8j_A S-adenosylmethionine-de 99.6 3E-15 1E-19 129.4 7.6 151 205-356 21-180 (209)
76 3cc8_A Putative methyltransfer 99.6 1.3E-14 4.4E-19 127.1 11.4 149 196-360 23-186 (230)
77 4hg2_A Methyltransferase type 99.6 1.9E-14 6.6E-19 128.5 12.3 97 207-308 39-139 (257)
78 2aot_A HMT, histamine N-methyl 99.5 2.5E-14 8.7E-19 130.5 10.7 142 206-356 51-218 (292)
79 2gb4_A Thiopurine S-methyltran 99.5 3.4E-14 1.2E-18 126.6 11.1 133 206-359 67-227 (252)
80 3g5t_A Trans-aconitate 3-methy 99.5 4.6E-14 1.6E-18 129.2 10.7 163 182-352 13-197 (299)
81 2i62_A Nicotinamide N-methyltr 99.5 2.9E-14 9.8E-19 127.8 8.6 141 205-360 54-240 (265)
82 3thr_A Glycine N-methyltransfe 99.5 5.3E-15 1.8E-19 134.9 3.7 99 205-305 55-176 (293)
83 1ri5_A MRNA capping enzyme; me 99.5 2E-14 6.8E-19 131.2 7.5 154 205-359 62-250 (298)
84 4e2x_A TCAB9; kijanose, tetron 99.5 3.9E-14 1.3E-18 135.8 9.8 151 194-360 95-254 (416)
85 1wzn_A SAM-dependent methyltra 99.5 6.2E-13 2.1E-17 118.3 16.3 107 196-305 31-146 (252)
86 3giw_A Protein of unknown func 99.5 3.1E-13 1.1E-17 120.3 14.2 141 207-355 78-243 (277)
87 3q87_B N6 adenine specific DNA 99.5 7.2E-13 2.5E-17 110.9 14.6 119 206-360 22-150 (170)
88 3m70_A Tellurite resistance pr 99.5 1.7E-13 5.8E-18 124.5 11.6 139 198-357 112-258 (286)
89 2kw5_A SLR1183 protein; struct 99.5 1.8E-13 6.1E-18 117.6 10.5 133 207-359 30-171 (202)
90 2a14_A Indolethylamine N-methy 99.5 1.8E-14 6.3E-19 129.4 4.4 140 205-359 53-238 (263)
91 3ofk_A Nodulation protein S; N 99.5 1.9E-14 6.5E-19 125.1 4.0 100 205-306 49-156 (216)
92 2gs9_A Hypothetical protein TT 99.5 2E-13 6.9E-18 118.1 10.2 142 197-358 28-177 (211)
93 2g72_A Phenylethanolamine N-me 99.4 3.8E-14 1.3E-18 129.1 4.8 138 207-359 71-256 (289)
94 3e05_A Precorrin-6Y C5,15-meth 99.4 9.3E-13 3.2E-17 113.4 13.4 124 197-356 31-164 (204)
95 2b3t_A Protein methyltransfera 99.4 1.1E-12 3.7E-17 118.6 14.3 144 195-370 99-275 (276)
96 1fbn_A MJ fibrillarin homologu 99.4 1.3E-12 4.3E-17 114.9 13.9 141 205-370 72-227 (230)
97 3mq2_A 16S rRNA methyltransfer 99.4 1.9E-13 6.7E-18 118.9 8.5 142 205-359 25-184 (218)
98 3uwp_A Histone-lysine N-methyl 99.4 4.6E-13 1.6E-17 125.1 10.7 113 195-311 162-295 (438)
99 1dus_A MJ0882; hypothetical pr 99.4 1.2E-12 4E-17 111.2 12.3 141 196-370 42-193 (194)
100 4dzr_A Protein-(glutamine-N5) 99.4 1.8E-13 6.2E-18 118.4 6.5 138 195-361 18-194 (215)
101 3grz_A L11 mtase, ribosomal pr 99.4 3.9E-13 1.3E-17 115.9 8.5 128 206-368 59-194 (205)
102 3orh_A Guanidinoacetate N-meth 99.4 5E-14 1.7E-18 124.5 2.8 133 206-356 59-207 (236)
103 3p2e_A 16S rRNA methylase; met 99.4 7.5E-13 2.6E-17 115.9 9.0 145 206-360 23-186 (225)
104 3hm2_A Precorrin-6Y C5,15-meth 99.4 9.6E-13 3.3E-17 110.5 9.2 101 197-305 16-128 (178)
105 3htx_A HEN1; HEN1, small RNA m 99.4 3E-12 1E-16 128.2 13.8 108 198-307 713-837 (950)
106 2vdw_A Vaccinia virus capping 99.4 2.8E-12 9.7E-17 117.3 10.7 99 207-306 48-171 (302)
107 3iv6_A Putative Zn-dependent a 99.3 2.3E-12 7.9E-17 114.8 9.7 108 195-306 34-150 (261)
108 3bgv_A MRNA CAP guanine-N7 met 99.3 2.2E-12 7.6E-17 118.7 9.8 100 206-306 33-157 (313)
109 1zx0_A Guanidinoacetate N-meth 99.3 5.4E-13 1.9E-17 117.7 5.4 100 206-306 59-172 (236)
110 1af7_A Chemotaxis receptor met 99.3 1.1E-12 3.6E-17 118.0 6.6 96 207-302 105-250 (274)
111 4df3_A Fibrillarin-like rRNA/T 99.3 4E-12 1.4E-16 111.0 9.2 140 205-368 75-229 (233)
112 1nt2_A Fibrillarin-like PRE-rR 99.3 1.4E-11 4.6E-16 106.7 12.2 137 205-370 55-209 (210)
113 2pxx_A Uncharacterized protein 99.3 3.2E-12 1.1E-16 110.6 8.0 101 206-307 41-162 (215)
114 3mti_A RRNA methylase; SAM-dep 99.3 5.2E-12 1.8E-16 106.9 8.8 133 205-360 20-170 (185)
115 1yb2_A Hypothetical protein TA 99.3 1.3E-12 4.6E-17 117.9 5.2 125 197-358 101-236 (275)
116 1l3i_A Precorrin-6Y methyltran 99.3 5.6E-12 1.9E-16 106.8 8.6 120 197-353 24-154 (192)
117 3mb5_A SAM-dependent methyltra 99.3 7.8E-12 2.7E-16 111.4 9.9 127 196-359 83-222 (255)
118 1g8a_A Fibrillarin-like PRE-rR 99.3 2.6E-11 8.7E-16 106.1 12.6 141 205-370 71-226 (227)
119 1yzh_A TRNA (guanine-N(7)-)-me 99.3 1.3E-11 4.3E-16 107.2 10.5 98 207-304 41-156 (214)
120 2nxc_A L11 mtase, ribosomal pr 99.3 8E-12 2.7E-16 111.5 9.0 120 206-361 119-246 (254)
121 3evz_A Methyltransferase; NYSG 99.3 1.4E-11 4.9E-16 107.9 10.3 126 205-359 53-206 (230)
122 3m33_A Uncharacterized protein 99.3 2.4E-12 8.3E-17 112.7 5.3 114 206-359 47-167 (226)
123 3njr_A Precorrin-6Y methylase; 99.3 2.3E-11 7.8E-16 104.8 11.3 121 198-357 47-178 (204)
124 3fzg_A 16S rRNA methylase; met 99.3 6.4E-12 2.2E-16 105.0 7.3 97 206-304 48-152 (200)
125 3eey_A Putative rRNA methylase 99.3 5.8E-12 2E-16 107.7 7.0 103 205-307 20-142 (197)
126 2ipx_A RRNA 2'-O-methyltransfe 99.3 7.8E-12 2.7E-16 110.0 7.7 141 205-369 75-230 (233)
127 2avn_A Ubiquinone/menaquinone 99.3 1.6E-11 5.6E-16 109.8 9.8 97 207-306 54-154 (260)
128 3bwc_A Spermidine synthase; SA 99.2 1.4E-11 4.7E-16 112.9 9.0 129 206-359 94-240 (304)
129 3id6_C Fibrillarin-like rRNA/T 99.2 7.5E-11 2.6E-15 103.1 12.2 141 205-369 74-229 (232)
130 3fpf_A Mtnas, putative unchara 99.2 1.9E-11 6.4E-16 110.1 8.5 96 205-305 120-223 (298)
131 1xdz_A Methyltransferase GIDB; 99.2 7.4E-12 2.5E-16 110.7 5.6 120 206-358 69-201 (240)
132 2ld4_A Anamorsin; methyltransf 99.2 1.3E-11 4.6E-16 103.5 6.7 109 205-351 10-128 (176)
133 2pwy_A TRNA (adenine-N(1)-)-me 99.2 1.8E-11 6.3E-16 109.0 7.9 126 196-358 86-223 (258)
134 3lpm_A Putative methyltransfer 99.2 6.7E-11 2.3E-15 105.7 11.4 124 205-359 46-201 (259)
135 2h00_A Methyltransferase 10 do 99.2 1E-12 3.4E-17 117.3 -0.6 145 207-360 65-239 (254)
136 4dcm_A Ribosomal RNA large sub 99.2 2.4E-11 8.3E-16 114.3 8.7 108 197-305 213-335 (375)
137 3hp7_A Hemolysin, putative; st 99.2 7.1E-11 2.4E-15 106.5 11.2 149 196-360 74-233 (291)
138 2yxd_A Probable cobalt-precorr 99.2 3.7E-11 1.3E-15 101.0 8.7 120 197-356 26-154 (183)
139 2pjd_A Ribosomal RNA small sub 99.2 1.1E-11 3.6E-16 115.7 5.7 109 197-306 187-305 (343)
140 2plw_A Ribosomal RNA methyltra 99.2 1.4E-10 4.9E-15 99.2 12.4 107 195-305 10-155 (201)
141 1ej0_A FTSJ; methyltransferase 99.2 9.1E-11 3.1E-15 97.8 10.8 108 196-307 11-139 (180)
142 3b3j_A Histone-arginine methyl 99.2 1.3E-11 4.6E-16 119.7 5.9 106 195-302 147-261 (480)
143 3dxy_A TRNA (guanine-N(7)-)-me 99.2 1.6E-11 5.6E-16 106.9 5.6 99 207-305 34-151 (218)
144 2fca_A TRNA (guanine-N(7)-)-me 99.2 3.8E-11 1.3E-15 104.1 7.8 98 207-304 38-153 (213)
145 1u2z_A Histone-lysine N-methyl 99.2 1.2E-10 4.1E-15 110.7 11.5 112 195-310 231-365 (433)
146 3duw_A OMT, O-methyltransferas 99.2 2.9E-11 1E-15 105.4 6.7 97 206-307 57-170 (223)
147 3opn_A Putative hemolysin; str 99.2 2.9E-11 9.9E-16 106.2 6.4 142 196-360 26-185 (232)
148 1o54_A SAM-dependent O-methylt 99.2 4.4E-11 1.5E-15 108.0 7.6 127 196-359 102-239 (277)
149 1o9g_A RRNA methyltransferase; 99.2 1E-10 3.4E-15 104.0 9.5 109 197-306 42-216 (250)
150 3g89_A Ribosomal RNA small sub 99.1 2.4E-11 8.2E-16 108.0 4.9 121 206-359 79-212 (249)
151 3p9n_A Possible methyltransfer 99.1 1.6E-10 5.5E-15 98.1 9.6 101 206-308 43-157 (189)
152 2y1w_A Histone-arginine methyl 99.1 4.8E-11 1.6E-15 111.4 6.8 107 196-304 40-155 (348)
153 3kr9_A SAM-dependent methyltra 99.1 2.4E-10 8.3E-15 99.1 10.6 117 206-357 14-141 (225)
154 2frn_A Hypothetical protein PH 99.1 1.4E-10 4.7E-15 104.8 9.4 121 205-355 123-253 (278)
155 3ckk_A TRNA (guanine-N(7)-)-me 99.1 1.2E-10 4E-15 102.6 8.6 100 206-305 45-169 (235)
156 3lbf_A Protein-L-isoaspartate 99.1 8.9E-11 3E-15 101.3 7.6 99 197-306 68-176 (210)
157 3r3h_A O-methyltransferase, SA 99.1 6.6E-11 2.3E-15 104.7 6.9 97 207-308 60-174 (242)
158 1jg1_A PIMT;, protein-L-isoasp 99.1 3.4E-11 1.2E-15 106.0 4.8 101 195-305 80-190 (235)
159 2yxe_A Protein-L-isoaspartate 99.1 1E-10 3.5E-15 101.3 7.7 100 197-305 68-178 (215)
160 3tfw_A Putative O-methyltransf 99.1 1.3E-10 4.4E-15 103.2 8.3 98 205-307 61-173 (248)
161 3lec_A NADB-rossmann superfami 99.1 3.6E-10 1.2E-14 98.3 10.4 129 206-369 20-162 (230)
162 2fyt_A Protein arginine N-meth 99.1 2.1E-10 7.1E-15 106.7 9.3 101 197-301 55-168 (340)
163 3u81_A Catechol O-methyltransf 99.1 6.9E-11 2.4E-15 103.0 5.5 98 206-306 57-172 (221)
164 1jsx_A Glucose-inhibited divis 99.1 6.8E-11 2.3E-15 101.7 5.3 91 207-303 65-164 (207)
165 2bm8_A Cephalosporin hydroxyla 99.1 2.9E-10 9.9E-15 100.2 9.2 94 207-305 81-188 (236)
166 3ntv_A MW1564 protein; rossman 99.1 6.5E-11 2.2E-15 104.1 4.8 97 206-307 70-179 (232)
167 3gjy_A Spermidine synthase; AP 99.1 1.4E-10 4.7E-15 105.7 7.0 98 208-305 90-201 (317)
168 3gnl_A Uncharacterized protein 99.1 5E-10 1.7E-14 98.1 9.6 117 206-357 20-147 (244)
169 3adn_A Spermidine synthase; am 99.1 2.2E-10 7.6E-15 104.1 7.5 99 206-304 82-198 (294)
170 1vbf_A 231AA long hypothetical 99.1 2.3E-10 8E-15 100.2 7.5 101 195-306 59-167 (231)
171 3sso_A Methyltransferase; macr 99.0 1.3E-10 4.5E-15 108.3 5.7 104 196-307 207-327 (419)
172 2b25_A Hypothetical protein; s 99.0 1.5E-10 5.1E-15 107.5 6.1 103 196-306 95-221 (336)
173 3q7e_A Protein arginine N-meth 99.0 1.6E-10 5.6E-15 107.8 6.2 96 206-302 65-171 (349)
174 1p91_A Ribosomal RNA large sub 99.0 5.6E-10 1.9E-14 100.1 9.6 93 206-307 84-181 (269)
175 2ozv_A Hypothetical protein AT 99.0 2.7E-10 9.2E-15 101.9 7.3 100 205-304 34-170 (260)
176 3dmg_A Probable ribosomal RNA 99.0 6.3E-10 2.2E-14 104.8 10.1 97 207-305 233-341 (381)
177 3lcv_B Sisomicin-gentamicin re 99.0 1.6E-10 5.3E-15 101.1 5.3 131 206-356 131-269 (281)
178 2gpy_A O-methyltransferase; st 99.0 1.4E-10 4.9E-15 101.8 5.2 97 206-307 53-163 (233)
179 1dl5_A Protein-L-isoaspartate 99.0 3.2E-10 1.1E-14 104.5 7.7 102 196-306 65-177 (317)
180 2vdv_E TRNA (guanine-N(7)-)-me 99.0 1.9E-10 6.5E-15 102.0 5.9 95 205-304 47-173 (246)
181 3r0q_C Probable protein argini 99.0 2.5E-10 8.4E-15 107.7 6.9 102 205-307 61-172 (376)
182 3tr6_A O-methyltransferase; ce 99.0 8.1E-11 2.8E-15 102.7 3.2 96 207-307 64-177 (225)
183 2hnk_A SAM-dependent O-methylt 99.0 4.2E-10 1.5E-14 99.2 7.8 97 206-307 59-184 (239)
184 3dou_A Ribosomal RNA large sub 99.0 6E-10 2.1E-14 94.8 8.3 106 194-305 12-140 (191)
185 2nyu_A Putative ribosomal RNA 99.0 1.1E-09 3.7E-14 93.2 9.6 105 197-305 12-146 (196)
186 3dr5_A Putative O-methyltransf 99.0 7.2E-10 2.5E-14 96.6 8.5 95 208-307 57-166 (221)
187 2esr_A Methyltransferase; stru 99.0 3.1E-10 1.1E-14 95.1 5.7 108 197-308 21-142 (177)
188 1i9g_A Hypothetical protein RV 99.0 1.1E-09 3.6E-14 98.9 9.6 104 195-306 88-205 (280)
189 1nv8_A HEMK protein; class I a 99.0 8.5E-10 2.9E-14 99.9 8.9 94 207-302 123-247 (284)
190 3bzb_A Uncharacterized protein 99.0 2.3E-09 7.7E-14 97.0 11.5 96 205-303 77-204 (281)
191 3c3p_A Methyltransferase; NP_9 99.0 2.6E-10 8.9E-15 98.5 4.3 96 207-307 56-163 (210)
192 2fhp_A Methylase, putative; al 99.0 3.7E-10 1.2E-14 95.3 5.0 107 197-307 34-157 (187)
193 1g6q_1 HnRNP arginine N-methyl 99.0 6.9E-10 2.3E-14 102.7 7.0 96 206-302 37-143 (328)
194 1sui_A Caffeoyl-COA O-methyltr 98.9 5.3E-10 1.8E-14 99.1 5.3 96 206-306 78-192 (247)
195 2oxt_A Nucleoside-2'-O-methylt 98.9 3.2E-09 1.1E-13 94.9 10.1 106 196-306 64-187 (265)
196 1ixk_A Methyltransferase; open 98.9 1.9E-09 6.6E-14 99.0 8.5 103 205-307 116-249 (315)
197 1r18_A Protein-L-isoaspartate( 98.9 9.4E-10 3.2E-14 96.1 6.0 93 205-305 82-195 (227)
198 2p41_A Type II methyltransfera 98.9 3.7E-09 1.3E-13 96.5 10.1 97 205-304 80-191 (305)
199 3tma_A Methyltransferase; thum 98.9 3.6E-09 1.2E-13 98.9 9.8 109 195-304 192-317 (354)
200 2yvl_A TRMI protein, hypotheti 98.9 4.9E-09 1.7E-13 92.6 10.0 100 197-306 82-192 (248)
201 2i7c_A Spermidine synthase; tr 98.9 6.6E-10 2.3E-14 100.6 4.2 99 206-304 77-192 (283)
202 1ws6_A Methyltransferase; stru 98.9 5.6E-10 1.9E-14 92.7 3.5 96 207-308 41-151 (171)
203 2wa2_A Non-structural protein 98.9 3.8E-09 1.3E-13 95.0 9.1 107 195-306 71-195 (276)
204 2pbf_A Protein-L-isoaspartate 98.9 2.1E-09 7.1E-14 93.8 7.0 94 205-306 78-195 (227)
205 2avd_A Catechol-O-methyltransf 98.9 8.5E-10 2.9E-14 96.4 4.3 98 205-307 67-182 (229)
206 1xj5_A Spermidine synthase 1; 98.9 9E-10 3.1E-14 101.8 4.5 98 206-303 119-234 (334)
207 1uir_A Polyamine aminopropyltr 98.9 8.7E-10 3E-14 101.3 4.3 100 206-305 76-196 (314)
208 3gdh_A Trimethylguanosine synt 98.9 7.4E-11 2.5E-15 104.1 -2.9 134 207-361 78-221 (241)
209 1iy9_A Spermidine synthase; ro 98.9 8.9E-10 3E-14 99.3 4.1 98 207-304 75-189 (275)
210 1i1n_A Protein-L-isoaspartate 98.9 4.8E-09 1.6E-13 91.4 8.6 94 205-306 75-184 (226)
211 2o07_A Spermidine synthase; st 98.9 1E-09 3.5E-14 100.2 4.5 99 206-304 94-209 (304)
212 3c3y_A Pfomt, O-methyltransfer 98.9 1.1E-09 3.8E-14 96.5 4.5 96 206-306 69-183 (237)
213 2ift_A Putative methylase HI07 98.9 6.8E-10 2.3E-14 95.3 3.0 97 207-307 53-166 (201)
214 1mjf_A Spermidine synthase; sp 98.9 1.6E-09 5.5E-14 97.9 5.4 98 206-304 74-193 (281)
215 2b2c_A Spermidine synthase; be 98.9 9.6E-10 3.3E-14 100.8 3.6 99 206-304 107-222 (314)
216 3cbg_A O-methyltransferase; cy 98.8 8E-10 2.7E-14 97.0 2.9 96 207-307 72-185 (232)
217 2fpo_A Methylase YHHF; structu 98.8 1.8E-09 6E-14 92.7 4.9 97 207-307 54-163 (202)
218 2pt6_A Spermidine synthase; tr 98.8 1.2E-09 4.2E-14 100.5 4.1 99 206-304 115-230 (321)
219 3frh_A 16S rRNA methylase; met 98.8 4.3E-09 1.5E-13 91.2 6.9 96 205-304 103-206 (253)
220 1zq9_A Probable dimethyladenos 98.8 2.8E-09 9.4E-14 96.6 5.9 103 195-301 17-144 (285)
221 3a27_A TYW2, uncharacterized p 98.8 3.1E-09 1.1E-13 95.5 5.7 98 205-308 117-223 (272)
222 4hc4_A Protein arginine N-meth 98.8 2.8E-09 9.5E-14 99.7 5.3 95 207-302 83-187 (376)
223 1inl_A Spermidine synthase; be 98.8 2.4E-09 8.4E-14 97.4 4.7 97 207-303 90-204 (296)
224 1ne2_A Hypothetical protein TA 98.8 1.2E-08 4.2E-13 87.1 8.8 88 205-294 49-139 (200)
225 2xyq_A Putative 2'-O-methyl tr 98.8 1.2E-08 4.2E-13 91.9 9.0 115 205-357 61-195 (290)
226 4azs_A Methyltransferase WBDD; 98.8 4.3E-09 1.5E-13 104.5 6.1 102 206-309 65-178 (569)
227 2cmg_A Spermidine synthase; tr 98.8 9.2E-09 3.2E-13 91.8 6.9 89 206-304 71-171 (262)
228 2ih2_A Modification methylase 98.7 4.2E-08 1.4E-12 93.7 10.7 106 196-305 29-165 (421)
229 3ajd_A Putative methyltransfer 98.7 1.1E-08 3.7E-13 92.1 6.1 103 205-307 81-214 (274)
230 3tm4_A TRNA (guanine N2-)-meth 98.7 4.8E-08 1.6E-12 91.8 10.0 122 205-360 215-353 (373)
231 2yxl_A PH0851 protein, 450AA l 98.7 2.3E-08 7.9E-13 96.4 8.0 104 205-308 257-393 (450)
232 1wy7_A Hypothetical protein PH 98.7 1.1E-07 3.7E-12 81.5 11.3 88 205-294 47-141 (207)
233 1qam_A ERMC' methyltransferase 98.7 2.5E-08 8.6E-13 88.1 6.9 104 195-301 19-143 (244)
234 3k6r_A Putative transferase PH 98.7 2E-08 6.8E-13 90.0 6.1 120 205-354 123-252 (278)
235 2f8l_A Hypothetical protein LM 98.7 2.1E-08 7.3E-13 93.2 6.5 100 206-305 129-257 (344)
236 3b5i_A S-adenosyl-L-methionine 98.7 2.7E-07 9.4E-12 86.0 13.7 150 208-358 53-297 (374)
237 1yub_A Ermam, rRNA methyltrans 98.6 8.3E-09 2.9E-13 91.3 2.7 108 195-305 18-146 (245)
238 2igt_A SAM dependent methyltra 98.6 8.5E-08 2.9E-12 88.6 7.8 96 207-306 153-274 (332)
239 1sqg_A SUN protein, FMU protei 98.6 1E-07 3.4E-12 91.4 8.5 103 205-307 244-377 (429)
240 2h1r_A Dimethyladenosine trans 98.6 1.1E-07 3.7E-12 86.6 7.8 100 195-298 31-153 (299)
241 3m6w_A RRNA methylase; rRNA me 98.6 4.7E-08 1.6E-12 93.8 5.5 102 205-307 99-232 (464)
242 2frx_A Hypothetical protein YE 98.5 1.7E-07 5.7E-12 90.7 8.7 101 207-307 117-249 (479)
243 1rjd_A PPM1P, carboxy methyl t 98.5 7.2E-07 2.5E-11 82.2 11.7 142 206-352 96-281 (334)
244 1m6e_X S-adenosyl-L-methionnin 98.5 3.1E-06 1.1E-10 78.3 14.6 151 206-356 50-277 (359)
245 2efj_A 3,7-dimethylxanthine me 98.4 1.6E-06 5.5E-11 80.9 12.3 150 208-357 53-290 (384)
246 3m4x_A NOL1/NOP2/SUN family pr 98.4 1.4E-07 4.6E-12 90.5 5.0 103 205-307 103-237 (456)
247 3k0b_A Predicted N6-adenine-sp 98.4 6.1E-07 2.1E-11 84.7 7.8 111 194-305 189-351 (393)
248 3ftd_A Dimethyladenosine trans 98.4 1.2E-06 4.1E-11 77.4 8.8 91 195-287 20-116 (249)
249 2okc_A Type I restriction enzy 98.3 3E-07 1E-11 88.5 5.1 109 196-305 161-308 (445)
250 1wxx_A TT1595, hypothetical pr 98.3 1.8E-07 6.1E-12 88.2 3.4 98 207-306 209-327 (382)
251 3ldg_A Putative uncharacterize 98.3 1.7E-06 6E-11 81.2 10.1 111 194-305 182-344 (384)
252 2as0_A Hypothetical protein PH 98.3 2.4E-07 8.3E-12 87.8 4.2 99 207-306 217-337 (396)
253 3gru_A Dimethyladenosine trans 98.3 1.1E-06 3.9E-11 79.4 8.1 89 195-287 39-135 (295)
254 4dmg_A Putative uncharacterize 98.3 1.1E-06 3.7E-11 82.9 8.0 98 207-306 214-328 (393)
255 2yx1_A Hypothetical protein MJ 98.3 4E-07 1.4E-11 84.3 4.8 93 206-307 194-294 (336)
256 3evf_A RNA-directed RNA polyme 98.3 3.2E-06 1.1E-10 74.4 9.7 107 195-302 63-182 (277)
257 2b78_A Hypothetical protein SM 98.3 3.2E-07 1.1E-11 86.6 3.2 99 206-305 211-332 (385)
258 3fut_A Dimethyladenosine trans 98.3 1.9E-06 6.6E-11 76.9 8.1 91 195-289 36-133 (271)
259 3ldu_A Putative methylase; str 98.3 9.1E-07 3.1E-11 83.3 6.2 110 195-305 184-345 (385)
260 1uwv_A 23S rRNA (uracil-5-)-me 98.2 2.9E-06 9.9E-11 81.2 9.2 99 196-303 276-388 (433)
261 2qfm_A Spermine synthase; sper 98.2 6.7E-07 2.3E-11 82.5 4.4 98 206-304 187-314 (364)
262 3o4f_A Spermidine synthase; am 98.2 1.2E-06 4.2E-11 78.6 5.6 100 206-305 82-199 (294)
263 3c0k_A UPF0064 protein YCCW; P 98.2 5.5E-07 1.9E-11 85.3 3.4 98 206-305 219-340 (396)
264 4gqb_A Protein arginine N-meth 98.2 1.1E-06 3.8E-11 87.0 5.4 126 169-301 323-464 (637)
265 2jjq_A Uncharacterized RNA met 98.1 3.4E-06 1.2E-10 80.4 7.6 90 206-303 289-386 (425)
266 3v97_A Ribosomal RNA large sub 98.1 1.4E-06 4.8E-11 88.3 5.2 96 207-305 539-658 (703)
267 3uzu_A Ribosomal RNA small sub 98.1 9.6E-07 3.3E-11 79.3 3.6 85 195-280 31-128 (279)
268 3tqs_A Ribosomal RNA small sub 98.1 3.1E-06 1.1E-10 75.0 5.9 84 195-281 18-111 (255)
269 1qyr_A KSGA, high level kasuga 98.1 4.5E-06 1.5E-10 73.8 6.9 90 195-287 10-111 (252)
270 3ua3_A Protein arginine N-meth 98.0 4.9E-06 1.7E-10 82.4 6.4 126 169-301 378-531 (745)
271 3iei_A Leucine carboxyl methyl 98.0 0.00016 5.5E-09 66.3 14.8 143 207-359 90-281 (334)
272 3gcz_A Polyprotein; flavivirus 98.0 1.2E-05 4.3E-10 70.8 6.8 112 193-305 77-202 (282)
273 2qy6_A UPF0209 protein YFCK; s 97.9 8.7E-06 3E-10 72.1 5.7 96 207-302 60-211 (257)
274 1m6y_A S-adenosyl-methyltransf 97.9 1E-05 3.6E-10 73.3 4.8 78 195-273 15-106 (301)
275 3v97_A Ribosomal RNA large sub 97.8 4E-05 1.4E-09 77.6 8.0 110 195-305 179-348 (703)
276 3bt7_A TRNA (uracil-5-)-methyl 97.8 1.1E-05 3.9E-10 75.5 3.4 88 208-305 214-327 (369)
277 2dul_A N(2),N(2)-dimethylguano 97.8 2.3E-05 7.8E-10 73.4 5.4 92 207-304 47-164 (378)
278 2b9e_A NOL1/NOP2/SUN domain fa 97.7 7E-05 2.4E-09 68.2 8.0 102 205-307 100-237 (309)
279 2r6z_A UPF0341 protein in RSP 97.7 4.3E-05 1.5E-09 67.7 6.3 99 205-307 81-219 (258)
280 4auk_A Ribosomal RNA large sub 97.7 0.00017 5.7E-09 66.6 9.6 96 205-305 209-307 (375)
281 3eld_A Methyltransferase; flav 97.7 0.0002 6.9E-09 63.5 9.6 109 195-305 70-192 (300)
282 2ar0_A M.ecoki, type I restric 97.6 3.8E-05 1.3E-09 75.5 5.0 109 196-305 159-313 (541)
283 2vz8_A Fatty acid synthase; tr 97.6 1.7E-05 5.9E-10 90.6 2.3 142 207-358 1240-1394(2512)
284 2px2_A Genome polyprotein [con 97.6 0.00029 9.8E-09 61.2 9.2 110 194-305 61-184 (269)
285 3axs_A Probable N(2),N(2)-dime 97.6 3.3E-05 1.1E-09 72.5 3.6 92 207-304 52-158 (392)
286 3p8z_A Mtase, non-structural p 97.5 0.00078 2.7E-08 57.6 10.2 113 194-309 66-190 (267)
287 3s1s_A Restriction endonucleas 97.3 0.00069 2.4E-08 68.3 9.5 100 206-305 320-466 (878)
288 3lkz_A Non-structural protein 97.3 0.0014 4.9E-08 57.9 10.1 107 194-302 82-202 (321)
289 3khk_A Type I restriction-modi 97.3 0.00012 4.2E-09 71.7 3.7 109 195-305 234-396 (544)
290 2k4m_A TR8_protein, UPF0146 pr 97.3 0.0027 9.3E-08 50.2 10.3 85 206-307 34-124 (153)
291 3lkd_A Type I restriction-modi 97.2 0.00093 3.2E-08 65.4 9.3 98 207-305 221-359 (542)
292 3c6k_A Spermine synthase; sper 97.2 0.00019 6.4E-09 66.5 3.9 96 207-303 205-330 (381)
293 2oyr_A UPF0341 protein YHIQ; a 97.2 0.0001 3.6E-09 65.1 1.9 71 205-277 84-176 (258)
294 2wk1_A NOVP; transferase, O-me 97.1 0.0014 4.9E-08 58.4 8.8 123 206-360 105-272 (282)
295 2uyo_A Hypothetical protein ML 97.1 0.003 1E-07 57.3 10.7 143 207-354 102-274 (310)
296 3cvo_A Methyltransferase-like 97.1 0.0018 6.1E-08 54.8 8.1 88 207-304 30-154 (202)
297 2zwa_A Leucine carboxyl methyl 97.0 0.0036 1.2E-07 63.4 11.6 145 207-359 107-309 (695)
298 3ll7_A Putative methyltransfer 96.9 0.00052 1.8E-08 64.6 3.9 64 206-271 92-169 (410)
299 2heo_A Z-DNA binding protein 1 96.8 0.00076 2.6E-08 46.2 3.2 55 41-114 12-66 (67)
300 3b73_A PHIH1 repressor-like pr 96.7 0.0018 6.2E-08 49.1 4.9 61 41-121 15-77 (111)
301 1wg8_A Predicted S-adenosylmet 96.6 0.0019 6.6E-08 57.1 5.1 64 195-261 11-77 (285)
302 3pqk_A Biofilm growth-associat 96.6 0.0022 7.4E-08 47.9 4.4 64 35-116 19-82 (102)
303 1y0u_A Arsenical resistance op 96.5 0.0016 5.6E-08 48.0 3.5 62 34-118 26-87 (96)
304 1xmk_A Double-stranded RNA-spe 96.5 0.0024 8.1E-08 45.1 4.0 60 41-118 13-73 (79)
305 1qbj_A Protein (double-strande 96.5 0.0032 1.1E-07 44.8 4.6 64 40-118 11-74 (81)
306 3jth_A Transcription activator 96.4 0.0017 5.7E-08 48.1 2.9 64 35-116 19-82 (98)
307 4a5n_A Uncharacterized HTH-typ 96.4 0.006 2E-07 47.7 5.9 89 10-122 6-95 (131)
308 3r24_A NSP16, 2'-O-methyl tran 96.3 0.0065 2.2E-07 53.7 6.3 92 205-303 107-216 (344)
309 3f6o_A Probable transcriptiona 96.3 0.0027 9.3E-08 48.8 3.6 66 34-117 13-78 (118)
310 2hzt_A Putative HTH-type trans 96.2 0.0059 2E-07 46.0 5.0 55 61-121 27-82 (107)
311 3df8_A Possible HXLR family tr 96.1 0.0062 2.1E-07 46.2 4.8 52 61-122 40-94 (111)
312 1u2w_A CADC repressor, cadmium 96.0 0.0049 1.7E-07 47.6 3.7 67 33-116 36-102 (122)
313 3f6v_A Possible transcriptiona 96.0 0.0037 1.3E-07 50.3 3.1 70 31-118 50-119 (151)
314 1qgp_A Protein (double strande 95.9 0.0068 2.3E-07 42.6 3.7 49 40-97 15-63 (77)
315 2oqg_A Possible transcriptiona 95.9 0.0069 2.4E-07 45.9 4.0 62 39-118 21-82 (114)
316 2jsc_A Transcriptional regulat 95.8 0.0044 1.5E-07 47.6 2.8 65 34-116 16-80 (118)
317 4fzv_A Putative methyltransfer 95.8 0.01 3.5E-07 54.8 5.6 104 205-308 146-288 (359)
318 1xn7_A Hypothetical protein YH 95.8 0.0099 3.4E-07 41.8 4.3 43 44-98 7-49 (78)
319 3cuo_A Uncharacterized HTH-typ 95.8 0.006 2E-07 44.9 3.3 66 35-117 20-85 (99)
320 3tka_A Ribosomal RNA small sub 95.8 0.014 4.8E-07 52.9 6.3 67 194-261 45-115 (347)
321 2k02_A Ferrous iron transport 95.7 0.0095 3.3E-07 42.8 3.9 43 44-98 7-49 (87)
322 1z7u_A Hypothetical protein EF 95.7 0.011 3.9E-07 44.7 4.5 79 19-121 11-90 (112)
323 1ub9_A Hypothetical protein PH 95.7 0.011 3.9E-07 43.4 4.4 71 34-118 11-81 (100)
324 1r1u_A CZRA, repressor protein 95.6 0.0074 2.5E-07 45.3 3.3 47 39-98 26-72 (106)
325 3ech_A MEXR, multidrug resista 95.6 0.05 1.7E-06 42.7 8.4 69 39-121 37-105 (142)
326 3e6m_A MARR family transcripti 95.6 0.044 1.5E-06 44.1 8.0 69 40-122 54-122 (161)
327 1yyv_A Putative transcriptiona 95.6 0.013 4.4E-07 45.8 4.6 79 19-121 24-103 (131)
328 3mq0_A Transcriptional repress 95.5 0.008 2.7E-07 53.5 3.7 58 42-118 33-90 (275)
329 2y75_A HTH-type transcriptiona 95.5 0.016 5.6E-07 45.0 4.8 46 60-115 25-70 (129)
330 2kko_A Possible transcriptiona 95.4 0.0044 1.5E-07 46.8 1.4 59 40-116 26-84 (108)
331 2fsw_A PG_0823 protein; alpha- 95.4 0.017 5.8E-07 43.3 4.6 79 19-121 14-93 (107)
332 3g3z_A NMB1585, transcriptiona 95.4 0.049 1.7E-06 42.8 7.5 68 40-121 32-99 (145)
333 1r1t_A Transcriptional repress 95.3 0.012 4.2E-07 45.4 3.7 47 39-98 46-92 (122)
334 3bdd_A Regulatory protein MARR 95.3 0.11 3.8E-06 40.4 9.4 68 40-121 32-99 (142)
335 1i4w_A Mitochondrial replicati 95.3 0.021 7.3E-07 52.5 5.7 94 195-289 41-165 (353)
336 2nyx_A Probable transcriptiona 95.3 0.081 2.8E-06 42.9 8.7 68 40-121 46-113 (168)
337 3kp7_A Transcriptional regulat 95.1 0.12 4E-06 41.0 9.1 67 41-121 40-107 (151)
338 1oyi_A Double-stranded RNA-bin 95.0 0.012 4E-07 41.7 2.5 59 39-116 17-75 (82)
339 3u1d_A Uncharacterized protein 95.0 0.043 1.5E-06 43.7 6.0 72 40-121 30-105 (151)
340 2htj_A P fimbrial regulatory p 95.0 0.018 6.3E-07 40.7 3.5 43 43-97 4-46 (81)
341 3t8r_A Staphylococcus aureus C 94.8 0.027 9.3E-07 44.7 4.4 47 60-116 27-73 (143)
342 3k0l_A Repressor protein; heli 94.8 0.19 6.5E-06 40.3 9.7 69 40-122 47-115 (162)
343 1tbx_A ORF F-93, hypothetical 94.8 0.031 1.1E-06 41.1 4.4 64 42-122 11-78 (99)
344 4g6q_A Putative uncharacterize 94.8 0.009 3.1E-07 49.7 1.6 72 34-118 18-90 (182)
345 2xrn_A HTH-type transcriptiona 94.8 0.024 8.1E-07 49.4 4.3 61 42-120 9-69 (241)
346 1on2_A Transcriptional regulat 94.8 0.034 1.2E-06 43.8 4.9 49 61-121 22-70 (142)
347 1mkm_A ICLR transcriptional re 94.7 0.032 1.1E-06 48.8 5.0 57 42-117 11-67 (249)
348 2p4w_A Transcriptional regulat 94.7 0.027 9.1E-07 47.6 4.3 71 34-117 10-80 (202)
349 3bja_A Transcriptional regulat 94.7 0.043 1.5E-06 42.7 5.2 68 40-121 34-101 (139)
350 2hr3_A Probable transcriptiona 94.6 0.054 1.8E-06 42.6 5.7 69 39-121 35-104 (147)
351 2f2e_A PA1607; transcription f 94.5 0.044 1.5E-06 43.6 5.0 54 61-121 37-90 (146)
352 3nrv_A Putative transcriptiona 94.5 0.035 1.2E-06 43.9 4.3 69 39-121 40-108 (148)
353 2jt1_A PEFI protein; solution 94.4 0.02 6.9E-07 40.1 2.4 35 60-98 23-57 (77)
354 3ufb_A Type I restriction-modi 94.4 0.15 5E-06 49.8 9.3 110 195-305 206-363 (530)
355 3oop_A LIN2960 protein; protei 94.4 0.03 1E-06 44.0 3.7 69 39-121 37-105 (143)
356 2gxg_A 146AA long hypothetical 94.4 0.061 2.1E-06 42.2 5.6 67 40-121 38-104 (146)
357 3r4k_A Transcriptional regulat 94.3 0.012 3.9E-07 52.0 1.2 58 43-118 10-67 (260)
358 2pex_A Transcriptional regulat 94.3 0.074 2.5E-06 42.2 6.0 69 40-122 48-116 (153)
359 1r7j_A Conserved hypothetical 94.3 0.054 1.9E-06 39.6 4.7 48 62-122 21-68 (95)
360 3vyw_A MNMC2; tRNA wobble urid 94.3 0.097 3.3E-06 46.9 7.2 120 207-360 96-249 (308)
361 2g7u_A Transcriptional regulat 94.3 0.023 7.8E-07 50.0 3.0 59 43-121 18-76 (257)
362 3cjn_A Transcriptional regulat 94.2 0.082 2.8E-06 42.4 6.1 68 40-121 53-120 (162)
363 3lwf_A LIN1550 protein, putati 94.2 0.037 1.3E-06 44.8 3.9 46 60-115 43-88 (159)
364 3eco_A MEPR; mutlidrug efflux 94.1 0.11 3.9E-06 40.3 6.6 71 40-122 32-102 (139)
365 1jgs_A Multiple antibiotic res 94.1 0.056 1.9E-06 42.0 4.8 68 40-121 35-102 (138)
366 3cdh_A Transcriptional regulat 94.1 0.058 2E-06 43.0 4.9 68 40-121 44-111 (155)
367 2nnn_A Probable transcriptiona 94.1 0.041 1.4E-06 42.9 4.0 68 40-121 39-106 (140)
368 3jw4_A Transcriptional regulat 94.1 0.12 4.1E-06 40.7 6.7 70 40-121 42-111 (148)
369 2rdp_A Putative transcriptiona 94.0 0.33 1.1E-05 38.1 9.3 67 41-121 44-110 (150)
370 2eth_A Transcriptional regulat 94.0 0.077 2.6E-06 42.3 5.5 69 39-121 44-112 (154)
371 3s2w_A Transcriptional regulat 94.0 0.12 4.1E-06 41.3 6.6 67 42-122 53-119 (159)
372 2obp_A Putative DNA-binding pr 94.0 0.07 2.4E-06 39.0 4.6 55 59-121 34-88 (96)
373 2wte_A CSA3; antiviral protein 93.9 0.048 1.6E-06 47.4 4.4 64 40-122 153-216 (244)
374 3k69_A Putative transcription 93.9 0.041 1.4E-06 44.7 3.7 47 60-116 27-73 (162)
375 3tgn_A ADC operon repressor AD 93.9 0.05 1.7E-06 42.8 4.2 68 39-121 38-105 (146)
376 2o0y_A Transcriptional regulat 93.9 0.027 9.1E-07 49.6 2.7 47 60-118 37-83 (260)
377 4esf_A PADR-like transcription 93.9 0.1 3.5E-06 39.7 5.7 75 34-121 6-86 (117)
378 2zkz_A Transcriptional repress 93.9 0.027 9.3E-07 41.5 2.3 62 37-117 25-87 (99)
379 1s3j_A YUSO protein; structura 93.9 0.28 9.7E-06 38.7 8.6 67 41-121 39-105 (155)
380 2fu4_A Ferric uptake regulatio 93.8 0.034 1.2E-06 39.4 2.6 48 40-98 18-71 (83)
381 2bv6_A MGRA, HTH-type transcri 93.7 0.075 2.6E-06 41.5 4.8 68 40-121 38-105 (142)
382 3hsr_A HTH-type transcriptiona 93.7 0.031 1.1E-06 43.9 2.5 69 40-122 37-105 (140)
383 2ia2_A Putative transcriptiona 93.7 0.023 7.9E-07 50.2 1.8 55 43-117 25-79 (265)
384 2fa5_A Transcriptional regulat 93.7 0.062 2.1E-06 43.1 4.3 68 40-121 50-117 (162)
385 3bj6_A Transcriptional regulat 93.6 0.36 1.2E-05 37.9 8.9 68 40-121 41-108 (152)
386 2pg4_A Uncharacterized protein 93.6 0.065 2.2E-06 39.0 4.0 53 61-121 30-83 (95)
387 3bro_A Transcriptional regulat 93.6 0.33 1.1E-05 37.6 8.4 69 41-121 36-104 (141)
388 2fbh_A Transcriptional regulat 93.5 0.069 2.3E-06 41.9 4.3 67 41-121 39-106 (146)
389 1ylf_A RRF2 family protein; st 93.4 0.046 1.6E-06 43.7 3.1 45 61-116 30-74 (149)
390 2esh_A Conserved hypothetical 93.4 0.17 5.7E-06 38.6 6.1 73 35-121 9-90 (118)
391 2qww_A Transcriptional regulat 93.4 0.073 2.5E-06 42.3 4.3 68 40-121 42-111 (154)
392 3bpv_A Transcriptional regulat 93.3 0.053 1.8E-06 42.1 3.3 68 40-121 30-97 (138)
393 1lj9_A Transcriptional regulat 93.3 0.077 2.6E-06 41.6 4.3 67 41-121 31-97 (144)
394 1z91_A Organic hydroperoxide r 93.3 0.07 2.4E-06 42.0 4.0 69 40-122 41-109 (147)
395 2fbi_A Probable transcriptiona 93.2 0.054 1.8E-06 42.3 3.2 68 40-121 37-104 (142)
396 4hbl_A Transcriptional regulat 93.2 0.044 1.5E-06 43.5 2.7 68 40-121 42-109 (149)
397 3f8b_A Transcriptional regulat 93.2 0.16 5.5E-06 38.5 5.8 75 34-121 7-89 (116)
398 2lkp_A Transcriptional regulat 93.2 0.048 1.6E-06 41.5 2.8 47 39-98 32-78 (119)
399 1sfx_A Conserved hypothetical 93.2 0.06 2.1E-06 39.8 3.3 47 40-98 21-67 (109)
400 2vn2_A DNAD, chromosome replic 93.1 0.1 3.4E-06 40.5 4.5 34 61-98 51-84 (128)
401 2zig_A TTHA0409, putative modi 93.1 0.1 3.4E-06 46.8 5.1 51 194-248 224-275 (297)
402 3fm5_A Transcriptional regulat 93.1 0.078 2.7E-06 42.0 4.0 70 39-121 39-108 (150)
403 2a61_A Transcriptional regulat 93.1 0.061 2.1E-06 42.2 3.3 68 40-121 34-101 (145)
404 3deu_A Transcriptional regulat 93.0 0.069 2.4E-06 43.3 3.7 69 40-121 54-122 (166)
405 2x4h_A Hypothetical protein SS 93.0 0.12 4E-06 40.4 4.9 49 60-121 30-78 (139)
406 3boq_A Transcriptional regulat 92.9 0.23 7.9E-06 39.6 6.6 68 40-121 48-116 (160)
407 2qvo_A Uncharacterized protein 92.8 0.093 3.2E-06 38.2 3.8 52 61-121 30-81 (95)
408 3u2r_A Regulatory protein MARR 92.8 0.25 8.6E-06 39.8 6.8 71 40-122 47-117 (168)
409 2qlz_A Transcription factor PF 92.7 0.031 1.1E-06 48.2 1.2 73 33-118 6-79 (232)
410 3hhh_A Transcriptional regulat 92.6 0.13 4.5E-06 39.1 4.5 76 33-121 7-88 (116)
411 3iht_A S-adenosyl-L-methionine 92.5 0.096 3.3E-06 41.6 3.6 109 195-306 30-149 (174)
412 3elk_A Putative transcriptiona 92.5 0.11 3.6E-06 39.7 3.8 77 33-122 8-91 (117)
413 2frh_A SARA, staphylococcal ac 92.5 0.087 3E-06 40.6 3.4 69 41-121 39-107 (127)
414 4b8x_A SCO5413, possible MARR- 92.4 0.067 2.3E-06 42.5 2.7 56 60-121 50-105 (147)
415 2h09_A Transcriptional regulat 92.2 0.21 7.2E-06 39.8 5.5 49 61-121 54-102 (155)
416 4aik_A Transcriptional regulat 92.1 0.22 7.5E-06 39.6 5.4 68 41-121 33-100 (151)
417 1uly_A Hypothetical protein PH 92.0 0.13 4.4E-06 43.0 4.1 52 34-98 15-66 (192)
418 3nqo_A MARR-family transcripti 92.0 0.17 5.9E-06 41.9 4.9 73 38-122 40-112 (189)
419 3f3x_A Transcriptional regulat 91.9 0.079 2.7E-06 41.6 2.6 67 40-121 38-104 (144)
420 3r0a_A Putative transcriptiona 91.8 0.097 3.3E-06 40.2 2.9 48 40-98 27-75 (123)
421 2cfx_A HTH-type transcriptiona 91.8 0.13 4.4E-06 40.6 3.7 45 41-97 7-51 (144)
422 2pn6_A ST1022, 150AA long hypo 91.8 0.1 3.6E-06 41.4 3.2 46 40-97 4-49 (150)
423 2w25_A Probable transcriptiona 91.6 0.14 4.7E-06 40.8 3.7 45 41-97 9-53 (150)
424 1q1h_A TFE, transcription fact 91.5 0.11 3.8E-06 38.9 2.9 47 41-98 20-66 (110)
425 2p5v_A Transcriptional regulat 91.3 0.15 5.1E-06 41.1 3.7 45 41-97 12-56 (162)
426 1xma_A Predicted transcription 91.1 0.14 4.9E-06 40.6 3.2 74 35-121 37-118 (145)
427 2dbb_A Putative HTH-type trans 90.9 0.18 6.3E-06 40.0 3.8 46 40-97 10-55 (151)
428 2fxa_A Protease production reg 90.8 0.17 5.9E-06 42.7 3.7 68 40-121 49-116 (207)
429 3hrs_A Metalloregulator SCAR; 90.8 0.19 6.5E-06 42.7 3.9 50 60-121 19-68 (214)
430 1bja_A Transcription regulator 90.6 0.37 1.3E-05 35.0 4.7 61 41-122 18-79 (95)
431 2cg4_A Regulatory protein ASNC 90.5 0.16 5.5E-06 40.4 3.1 45 41-97 10-54 (152)
432 3l7w_A Putative uncharacterize 90.5 0.25 8.4E-06 36.9 3.9 70 38-121 8-81 (108)
433 4esb_A Transcriptional regulat 90.4 0.18 6.1E-06 38.2 3.1 69 40-121 10-84 (115)
434 2cyy_A Putative HTH-type trans 90.3 0.15 5E-06 40.6 2.7 45 41-97 9-53 (151)
435 3i4p_A Transcriptional regulat 90.3 0.18 6.1E-06 40.8 3.2 46 40-97 4-49 (162)
436 1xd7_A YWNA; structural genomi 90.2 0.2 6.9E-06 39.6 3.4 43 63-116 25-67 (145)
437 2ia0_A Putative HTH-type trans 90.1 0.22 7.5E-06 40.6 3.7 46 40-97 18-63 (171)
438 2d1h_A ST1889, 109AA long hypo 90.1 0.19 6.4E-06 37.0 3.0 34 61-98 36-69 (109)
439 2v79_A DNA replication protein 90.0 0.29 9.8E-06 38.3 4.1 54 61-118 51-104 (135)
440 4fx0_A Probable transcriptiona 90.0 0.2 7E-06 39.6 3.3 55 60-121 51-105 (148)
441 2e1c_A Putative HTH-type trans 90.0 0.2 6.7E-06 41.0 3.2 46 40-97 28-73 (171)
442 2fbk_A Transcriptional regulat 90.0 0.18 6E-06 41.4 3.0 71 40-121 70-140 (181)
443 1i1g_A Transcriptional regulat 89.9 0.17 5.7E-06 39.6 2.7 45 41-97 6-50 (141)
444 2lnb_A Z-DNA-binding protein 1 89.8 0.32 1.1E-05 33.4 3.6 48 40-98 20-67 (80)
445 1yg2_A Gene activator APHA; vi 89.6 0.36 1.2E-05 39.7 4.6 65 41-118 4-76 (179)
446 2o03_A Probable zinc uptake re 89.2 0.3 1E-05 37.8 3.6 50 38-98 10-64 (131)
447 1okr_A MECI, methicillin resis 88.9 0.14 4.8E-06 39.0 1.5 46 41-98 12-61 (123)
448 1p6r_A Penicillinase repressor 88.8 0.2 6.8E-06 35.2 2.1 47 40-98 10-60 (82)
449 1ku9_A Hypothetical protein MJ 88.0 0.97 3.3E-05 35.1 6.0 34 61-98 41-74 (152)
450 3tos_A CALS11; methyltransfera 87.9 1.2 4.1E-05 38.8 7.0 94 208-305 70-218 (257)
451 3ggo_A Prephenate dehydrogenas 87.5 2.3 8E-05 38.1 8.9 90 208-302 33-126 (314)
452 1sfu_A 34L protein; protein/Z- 87.3 0.35 1.2E-05 33.3 2.4 35 60-98 28-62 (75)
453 2k4b_A Transcriptional regulat 87.1 0.36 1.2E-05 35.5 2.6 51 40-98 36-86 (99)
454 1p4x_A Staphylococcal accessor 86.4 0.64 2.2E-05 40.4 4.4 70 40-121 159-228 (250)
455 2fe3_A Peroxide operon regulat 86.4 0.59 2E-05 36.9 3.8 50 38-98 21-75 (145)
456 3k2z_A LEXA repressor; winged 86.4 0.59 2E-05 38.9 4.0 34 60-97 23-56 (196)
457 3i71_A Ethanolamine utilizatio 86.2 1.3 4.5E-05 28.4 4.5 43 60-115 17-59 (68)
458 2dk5_A DNA-directed RNA polyme 85.6 0.66 2.3E-05 33.4 3.4 47 42-98 23-69 (91)
459 1v4r_A Transcriptional repress 85.3 0.37 1.3E-05 35.4 2.0 34 60-97 33-67 (102)
460 1jhg_A Trp operon repressor; c 85.2 0.71 2.4E-05 33.9 3.4 42 37-91 43-84 (101)
461 1fx7_A Iron-dependent represso 85.0 0.65 2.2E-05 39.7 3.7 47 63-121 26-72 (230)
462 2xvc_A ESCRT-III, SSO0910; cel 84.8 0.82 2.8E-05 29.4 3.0 44 43-97 14-57 (59)
463 2xig_A Ferric uptake regulatio 84.3 0.94 3.2E-05 35.9 4.1 50 38-98 26-80 (150)
464 2dql_A PEX protein; circadian 84.0 1.6 5.3E-05 32.9 5.0 65 44-121 27-99 (115)
465 3ri2_A Transcriptional regulat 83.5 3.2 0.00011 31.6 6.7 76 31-121 13-93 (123)
466 2vxz_A Pyrsv_GP04; viral prote 83.5 0.71 2.4E-05 36.1 2.8 54 43-114 15-68 (165)
467 2py6_A Methyltransferase FKBM; 82.9 1.7 5.9E-05 40.6 5.9 41 206-246 225-268 (409)
468 1mzb_A Ferric uptake regulatio 82.6 0.82 2.8E-05 35.6 3.0 50 38-98 17-72 (136)
469 3cta_A Riboflavin kinase; stru 82.1 1.2 4E-05 38.0 4.1 53 61-122 27-79 (230)
470 1j5y_A Transcriptional regulat 82.1 1.2 3.9E-05 36.8 3.9 49 38-97 20-69 (187)
471 2hoe_A N-acetylglucosamine kin 81.9 0.75 2.6E-05 42.6 3.0 75 31-118 12-87 (380)
472 3mwm_A ZUR, putative metal upt 81.7 0.94 3.2E-05 35.4 3.1 50 38-98 13-67 (139)
473 1zkd_A DUF185; NESG, RPR58, st 81.6 6.1 0.00021 36.5 8.9 35 205-239 78-119 (387)
474 1g60_A Adenine-specific methyl 81.6 2.4 8.1E-05 36.9 6.0 50 194-247 201-251 (260)
475 3tqn_A Transcriptional regulat 81.3 1.3 4.4E-05 33.2 3.6 35 60-98 31-66 (113)
476 1hsj_A Fusion protein consisti 80.3 1.2 4E-05 42.6 3.8 69 41-121 406-474 (487)
477 2b0l_A GTP-sensing transcripti 80.0 0.89 3E-05 33.5 2.2 33 61-97 42-75 (102)
478 3b1f_A Putative prephenate deh 80.0 7.7 0.00026 33.9 8.9 88 209-301 7-98 (290)
479 2p8t_A Hypothetical protein PH 79.8 1.7 5.9E-05 36.1 4.1 48 61-121 30-77 (200)
480 2qq9_A Diphtheria toxin repres 79.4 1.4 4.9E-05 37.4 3.7 48 62-121 25-72 (226)
481 2oo3_A Protein involved in cat 79.2 2.9 9.9E-05 36.8 5.6 97 208-308 92-202 (283)
482 2ek5_A Predicted transcription 79.1 2.1 7E-05 33.0 4.2 36 59-98 25-61 (129)
483 1z6r_A MLC protein; transcript 79.0 1.4 4.9E-05 41.0 3.9 50 37-98 14-63 (406)
484 1pl8_A Human sorbitol dehydrog 78.5 5.4 0.00018 36.2 7.6 93 205-305 169-274 (356)
485 3mag_A VP39; methylated adenin 78.4 8.8 0.0003 33.8 8.3 79 207-309 60-143 (307)
486 2g9w_A Conserved hypothetical 78.1 1.3 4.5E-05 34.4 2.8 47 40-98 10-61 (138)
487 3l9f_A Putative uncharacterize 77.7 1.8 6.2E-05 36.2 3.7 63 43-118 40-110 (204)
488 1tc3_C Protein (TC3 transposas 77.4 1.6 5.5E-05 26.4 2.6 29 61-93 21-49 (51)
489 2w57_A Ferric uptake regulatio 77.2 1.1 3.7E-05 35.6 2.1 50 38-98 16-71 (150)
490 2zfw_A PEX; five alpha-helices 77.2 1.8 6.1E-05 34.3 3.3 63 44-119 49-119 (148)
491 2g5c_A Prephenate dehydrogenas 77.0 10 0.00036 32.9 8.8 88 210-302 3-94 (281)
492 1sd4_A Penicillinase repressor 76.9 1.1 3.9E-05 33.8 2.1 51 40-98 11-61 (126)
493 2dph_A Formaldehyde dismutase; 76.4 6.7 0.00023 36.3 7.7 99 205-306 183-301 (398)
494 2pjp_A Selenocysteine-specific 76.2 1.9 6.4E-05 32.7 3.1 34 61-98 20-53 (121)
495 1z05_A Transcriptional regulat 76.2 2.1 7.3E-05 40.2 4.2 51 36-98 36-86 (429)
496 3g7u_A Cytosine-specific methy 76.1 9 0.00031 35.2 8.3 95 209-308 3-122 (376)
497 3pvc_A TRNA 5-methylaminomethy 75.6 1.9 6.4E-05 43.3 3.8 33 207-239 58-102 (689)
498 2w48_A Sorbitol operon regulat 74.6 2.5 8.4E-05 38.0 4.0 32 61-96 21-52 (315)
499 2qlz_A Transcription factor PF 74.6 3.9 0.00013 34.9 5.0 43 42-97 168-210 (232)
500 3by6_A Predicted transcription 74.4 1.9 6.5E-05 33.0 2.7 35 60-98 33-68 (126)
No 1
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=6.3e-54 Score=405.59 Aligned_cols=351 Identities=54% Similarity=1.050 Sum_probs=304.2
Q ss_pred CChhHHHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCC-CCCCCcchHHHHHHHHh
Q 017495 12 TSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPT-KNPDAPFLLDRMLSLLA 90 (370)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~-~~~~~~~~l~~~L~~L~ 90 (370)
...++.+.+..+++++.+++.+++|++|++||||++|.+. | ++|+|++|||+++++ ++|..+..|+||||+|+
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~-----g-~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~ 86 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAA-----G-GKSLTPTEVAAKLPSAANPEAPDMVDRILRLLA 86 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHT-----T-TCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhc-----C-CCCCCHHHHHHhcCCCCCccchhhHHHHHHHHH
Confidence 5555778999999999999999999999999999999883 1 248999999999994 43333449999999999
Q ss_pred cCCceeccccCCCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCChh
Q 017495 91 SYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQF 170 (370)
Q Consensus 91 ~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~ 170 (370)
+.|+|++...++++|..+++|++|+.++.|..+.. +.++++++.+..++.+++.|.+|.+++++|.++|+..+|.++|
T Consensus 87 ~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~ 164 (364)
T 3p9c_A 87 SYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNED--GVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAF 164 (364)
T ss_dssp HTTSEEEEEEECSSSCEEEEEEECGGGGGSSCCTT--SCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHH
T ss_pred hCCCEEEeccccCCCCcCCEEecCHHHHHHcCCCC--CCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHH
Confidence 99999974211122222478999999998877653 3689998877667888999999999999999999999999999
Q ss_pred hhccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCC
Q 017495 171 EYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFP 250 (370)
Q Consensus 171 ~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~ 250 (370)
+|+..+++..+.|++.|...+......++..++++++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+
T Consensus 165 ~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ 244 (364)
T 3p9c_A 165 EYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFP 244 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCT
T ss_pred HHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcC
Confidence 99999999999999999998888888888888767888999999999999999999999999999999999999999888
Q ss_pred CCeEEeccCCCCCCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhh
Q 017495 251 GVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQ 330 (370)
Q Consensus 251 rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 330 (370)
+++++.+|+++++|.+|+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++.............+++.|+..
T Consensus 245 ~v~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~ 324 (364)
T 3p9c_A 245 GVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAH 324 (364)
T ss_dssp TEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred CeEEEeCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhc
Confidence 99999999998888779999999999999999999999999999999999999999877544332223445678888854
Q ss_pred cCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 331 TTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 331 ~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
..+++.||.++|+++|++|||+.++++++.+..++||++|
T Consensus 325 ~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 325 NPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp CSSCCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred ccCCccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 4589999999999999999999999999999999999998
No 2
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=1.9e-54 Score=407.51 Aligned_cols=329 Identities=23% Similarity=0.369 Sum_probs=291.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCcee
Q 017495 17 EEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILR 96 (370)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 96 (370)
.+.+..|.+++.||+.+++|++|++|||||+|.++ ++|+|++|||+++|+ ++..++|||++|++.|+++
T Consensus 6 ~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~-------~~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~ 74 (353)
T 4a6d_A 6 DQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEA-------PGPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLK 74 (353)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHS-------SSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcC-------CCCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEE
Confidence 36788899999999999999999999999999875 258999999999999 9999999999999999998
Q ss_pred ccccCCCCCccccceecchhhh-hhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccC---CChhhh
Q 017495 97 CSLQNGDNGQVERVYGAAPICK-FLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYG---MTQFEY 172 (370)
Q Consensus 97 ~~~~~~~~g~~~~~y~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g---~~~~~~ 172 (370)
+.. +.+ ++.|++|+.++ ++..+++ .++.+++.+. ....+..|.+|.++++++.++++..+| .++|++
T Consensus 75 ~~~---~~~--~~~y~~t~~s~~~l~~~~~---~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~ 145 (353)
T 4a6d_A 75 VET---RGG--KAFYRNTELSSDYLTTVSP---TSQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTA 145 (353)
T ss_dssp EEE---ETT--EEEEEECHHHHHHHSTTST---TCCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHH
T ss_pred Eec---cCc--cceeeCCHHHHHHhhcCCc---hHHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHH
Confidence 642 112 56899999987 5666665 7888887765 356788999999999999999988887 468899
Q ss_pred ccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC----
Q 017495 173 LGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS---- 248 (370)
Q Consensus 173 ~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~---- 248 (370)
+.++++....|+++|...+......++..++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 146 ~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~ 224 (353)
T 4a6d_A 146 IYRSEGERLQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSF 224 (353)
T ss_dssp HTSSHHHHHHHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhh
Confidence 9999999999999999988888888998887 88889999999999999999999999999999999999887653
Q ss_pred --CCCCeEEeccCCC-CCCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhh
Q 017495 249 --FPGVEHVGGDMFE-NVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDL 325 (370)
Q Consensus 249 --~~rv~~~~~D~~~-~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~ 325 (370)
.+||+++.+|+++ +.|.+|+|++.++||+|+|+++.++|++++++|+|||+|+|+|.+.+++...+ .....+|+
T Consensus 225 ~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~---~~~~~~dl 301 (353)
T 4a6d_A 225 QEEEQIDFQEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP---LLTQLYSL 301 (353)
T ss_dssp --CCSEEEEESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC---HHHHHHHH
T ss_pred cccCceeeecCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC---HHHHHHHH
Confidence 2789999999998 55566999999999999999999999999999999999999999988754433 45567889
Q ss_pred HHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 326 FMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 326 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
.|+..+ +|++||.+||+++|++|||+.+++++++...++|+++|
T Consensus 302 ~ml~~~-~g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 302 NMLVQT-EGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp HHHHSS-SCCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred HHHHhC-CCcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 998875 89999999999999999999999999999999999998
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=2.5e-53 Score=402.19 Aligned_cols=353 Identities=55% Similarity=1.019 Sum_probs=302.4
Q ss_pred CChhHHHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhc
Q 017495 12 TSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLAS 91 (370)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~ 91 (370)
....+.+.+..+++++.+++.+++|++|++|||||+|.+.+ ||++|+|++|||+++++.+|.++..|+||||+|++
T Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~----gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~ 89 (368)
T 3reo_A 14 THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSV----PPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLAS 89 (368)
T ss_dssp ---CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHC----CTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcC----CCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHh
Confidence 34467889999999999999999999999999999998710 13457999999999983233334599999999999
Q ss_pred CCceeccccCCCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCChhh
Q 017495 92 YDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFE 171 (370)
Q Consensus 92 ~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~ 171 (370)
.|+|++...++++|+.+++|++|+.++.|..+.. +.++++++.+..++.+++.|.+|.+++++|.++|+..+|.++|+
T Consensus 90 ~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~ 167 (368)
T 3reo_A 90 YSVVTYTLRELPSGKVERLYGLAPVCKFLTKNED--GVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFD 167 (368)
T ss_dssp TTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTT--SCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHH
T ss_pred CCCeEEecccCCCCcccceeCcCHHHHHHhCCCC--CCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHH
Confidence 9999974111122222378999999998876653 37899988877778899999999999999999999999999999
Q ss_pred hccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCC
Q 017495 172 YLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPG 251 (370)
Q Consensus 172 ~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~r 251 (370)
|+..+++..+.|+++|...+......++..++++++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++
T Consensus 168 ~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 247 (368)
T 3reo_A 168 YHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSG 247 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTT
T ss_pred HHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCC
Confidence 99999999999999999988887888888876677889999999999999999999999999999999999999998889
Q ss_pred CeEEeccCCCCCCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhc
Q 017495 252 VEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQT 331 (370)
Q Consensus 252 v~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 331 (370)
++++.+|+++++|.+|+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++.............+++.|+...
T Consensus 248 v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 327 (368)
T 3reo_A 248 VEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYN 327 (368)
T ss_dssp EEEEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHS
T ss_pred CEEEecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhc
Confidence 99999999988887799999999999999999999999999999999999999998765443322334566788887654
Q ss_pred CCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 332 TGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 332 ~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
.+++.|+.++|+++|++|||+.+++.+..+..+++|++|
T Consensus 328 ~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 328 PGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp SBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 489999999999999999999999999999999999987
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=7.9e-49 Score=369.03 Aligned_cols=325 Identities=24% Similarity=0.323 Sum_probs=288.2
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCc
Q 017495 15 DQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDI 94 (370)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~ 94 (370)
...+....+.+++.+++.+++|++++++|||++|.++ |+|++|||+++|+ +++.++|||++|++.|+
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~g---------~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~ 84 (348)
T 3lst_A 18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVDG---------PRTPAELAAATGT----DADALRRVLRLLAVRDV 84 (348)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTTS---------CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTS
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhCC---------CCCHHHHHHHhCc----CHHHHHHHHHHHHhCCC
Confidence 3446888999999999999999999999999999875 8999999999999 99999999999999999
Q ss_pred eeccccCCCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCChhhhcc
Q 017495 95 LRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLG 174 (370)
Q Consensus 95 l~~~~~~~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~ 174 (370)
|++. +++|++|+.++.|..+++ .++.+++.+..++.+++.|.+|++++++|.++++..+|.++|+++.
T Consensus 85 l~~~---------~~~y~~t~~s~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~ 152 (348)
T 3lst_A 85 VRES---------DGRFALTDKGAALRSDSP---VPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFD 152 (348)
T ss_dssp EEEE---------TTEEEECTTTGGGSTTSS---SCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHT
T ss_pred EEec---------CCEEecCHHHHHHhcCCC---ccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHH
Confidence 9962 588999999998877665 6788888776667788999999999999999999999988999999
Q ss_pred CCchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC-----C
Q 017495 175 TDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS-----F 249 (370)
Q Consensus 175 ~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-----~ 249 (370)
++++....|++.|...+......+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.++...+. .
T Consensus 153 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~ 231 (348)
T 3lst_A 153 GDAEVEALYYEGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVA 231 (348)
T ss_dssp TCHHHHHHHHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGT
T ss_pred hCHHHHHHHHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCC
Confidence 99999999999999988888888888887 88899999999999999999999999999999999877763221 1
Q ss_pred CCCeEEeccCCCCCCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhh
Q 017495 250 PGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLA 329 (370)
Q Consensus 250 ~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 329 (370)
++|+++.+|+++++|..|+|++.++||+|+++++.++|++++++|||||+|+|.|.+.++.... .....+++.|+.
T Consensus 232 ~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~ 307 (348)
T 3lst_A 232 GRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLA 307 (348)
T ss_dssp TSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHH
T ss_pred CCeEEEecCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhhhcChhhhh
Confidence 5799999999887774499999999999999999999999999999999999999988764222 234567777776
Q ss_pred hcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 330 QTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 330 ~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
. .+++.++.++|.++|+++||+++++++.....+++|++|
T Consensus 308 ~-~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 308 A-RTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp T-TSCCCCBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred c-CCCcCCCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 6 488999999999999999999999999878899999975
No 5
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=8.5e-49 Score=371.51 Aligned_cols=330 Identities=23% Similarity=0.403 Sum_probs=292.3
Q ss_pred CCCChhHHHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHH
Q 017495 10 NATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLL 89 (370)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L 89 (370)
......+.....++++++.+++.+++|++++++|||+.|.++ |+|++|||+++|+ +++.++|||++|
T Consensus 29 ~~~~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~g---------~~t~~eLA~~~g~----~~~~l~rlLr~L 95 (369)
T 3gwz_A 29 NPGTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQEG---------PRTATALAEATGA----HEQTLRRLLRLL 95 (369)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTTS---------CEEHHHHHHHHTC----CHHHHHHHHHHH
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcCC---------CCCHHHHHHHHCc----CHHHHHHHHHHH
Confidence 344445567889999999999999999999999999999975 8999999999999 999999999999
Q ss_pred hcCCceeccccCCCCCccccc-eecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCC
Q 017495 90 ASYDILRCSLQNGDNGQVERV-YGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMT 168 (370)
Q Consensus 90 ~~~g~l~~~~~~~~~g~~~~~-y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~ 168 (370)
++.|+|++.. ++. |++|+.++.|..+.+ .++.+++.+...+..++.|.+|.+.++++.++|+..+|.+
T Consensus 96 ~~~g~l~~~~--------~~~~y~~t~~s~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~ 164 (369)
T 3gwz_A 96 ATVGVFDDLG--------HDDLFAQNALSAVLLPDPA---SPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTS 164 (369)
T ss_dssp HHTTSSEECS--------STTEEECCHHHHTTSCCTT---CHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSC
T ss_pred HhCCCEEEeC--------CCceEecCHHHHHHhcCCc---hhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCC
Confidence 9999999631 467 999999998877665 6788888776666678999999999999999999889988
Q ss_pred hhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC
Q 017495 169 QFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS 248 (370)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~ 248 (370)
+|+|+.++++....|++.|..........++..++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 165 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 243 (369)
T 3gwz_A 165 FWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARE 243 (369)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHH
Confidence 99999999999999999999988888888888887 88889999999999999999999999999999999888887764
Q ss_pred -------CCCCeEEeccCCCCCCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhh
Q 017495 249 -------FPGVEHVGGDMFENVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIV 320 (370)
Q Consensus 249 -------~~rv~~~~~D~~~~~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~ 320 (370)
.++|+++.+|+++++|.. |+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++.... . .
T Consensus 244 ~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~----~-~ 318 (369)
T 3gwz_A 244 LLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAA----S-T 318 (369)
T ss_dssp HHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCH----H-H
T ss_pred hhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCC----c-h
Confidence 268999999999877755 99999999999999999999999999999999999999998764321 2 4
Q ss_pred hhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEe-cCCCeeEEEEeC
Q 017495 321 FEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVC-CAYNSWVMEFHK 370 (370)
Q Consensus 321 ~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~-~~~~~~~~e~~k 370 (370)
..+++.|+... +++.++.++|+++|+++||+++++++ ..+..++||++|
T Consensus 319 ~~~d~~~~~~~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 319 LFVDLLLLVLV-GGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHHHHHHHHHH-SCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred hHhhHHHHhhc-CCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 56788887764 89999999999999999999999999 678899999985
No 6
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=2.7e-48 Score=365.99 Aligned_cols=347 Identities=30% Similarity=0.477 Sum_probs=291.4
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcc
Q 017495 1 MANSKPKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPF 80 (370)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~ 80 (370)
|+|++-..+ ..+..+....+.+++.+++.+++|++++++|||+.|..+ ++|+|++|||+++++ +|.+++
T Consensus 1 ~~~~~~~~~---~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~-------~~~~t~~ela~~~~~-~~~~~~ 69 (352)
T 1fp2_A 1 MASSINGRK---PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNH-------GKPISLSNLVSILQV-PSSKIG 69 (352)
T ss_dssp -------CC---STHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHH-------TSCEEHHHHHHHHTC-CGGGHH
T ss_pred CCccccCCC---hHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhc-------CCCccHHHHHHHhCc-CCCChH
Confidence 677765543 356667888999999999999999999999999999874 138999999999999 444478
Q ss_pred hHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHh-cCCc
Q 017495 81 LLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVIL-EGGI 159 (370)
Q Consensus 81 ~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~~ 159 (370)
.++|||++|++.|+|++.. +| ++.|++|+.++.|..+++ .++++++.+..++.++..|.+|++.++ +|.+
T Consensus 70 ~l~rlLr~L~~~gll~~~~----~~--~~~y~~t~~s~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~ 140 (352)
T 1fp2_A 70 NVRRLMRYLAHNGFFEIIT----KE--EESYALTVASELLVRGSD---LCLAPMVECVLDPTLSGSYHELKKWIYEEDLT 140 (352)
T ss_dssp HHHHHHHHHHHTTSEEEEE----SS--SEEEEECHHHHTTSTTSS---SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCC
T ss_pred HHHHHHHHHHhCCeEEEec----CC--CCeEeCCHHHHHHhCCCC---ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999631 01 478999999998887765 678888887666778899999999999 8888
Q ss_pred cchhccCCChhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhc-CCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEee
Q 017495 160 PFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYR-GFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFD 238 (370)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D 238 (370)
+|+..+|.++|+++.++++....|++.|........+. +..++ .+++..+|||||||+|.++..+++++|+++++++|
T Consensus 141 ~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D 219 (352)
T 1fp2_A 141 LFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFD 219 (352)
T ss_dssp HHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEE
T ss_pred hHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEee
Confidence 99888898999999999999999999999888776666 66661 27778999999999999999999999999999999
Q ss_pred hhhHHHhCCCCCCCeEEeccCCCCCCCCCEEEecccccCCChhHHHHHHHHHHHhCCC---CcEEEEEeecCCCCCCCCc
Q 017495 239 LPHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPE---NGKVIIVESILPLVPENQA 315 (370)
Q Consensus 239 ~p~~~~~a~~~~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~p---gG~lli~e~~~~~~~~~~~ 315 (370)
+|.+++.+++..+++++.+|+++++|..|+|++.++||||+++++.++|++++++|+| ||+|+|.|...++....+.
T Consensus 220 ~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~ 299 (352)
T 1fp2_A 220 RPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQ 299 (352)
T ss_dssp CHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHH
T ss_pred CHHHHhhcccCCCcEEEeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccc
Confidence 9999999988778999999998877767999999999999999999999999999999 9999999998876432211
Q ss_pred cchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 316 SSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 316 ~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
.......+++.|+. . ++..++.++|.++|+++||+++++++.++..++||++|
T Consensus 300 ~~~~~~~~d~~~~~-~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 300 VTQIKLLMDVNMAC-L-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp HHHHHHHHHHHGGG-G-TCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred hhhhHhhccHHHHh-c-cCCCCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 11234466777765 3 58889999999999999999999999888889999986
No 7
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=1.2e-47 Score=362.43 Aligned_cols=342 Identities=30% Similarity=0.494 Sum_probs=290.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCce
Q 017495 16 QEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDIL 95 (370)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l 95 (370)
..+....+.+++.+++.+++|++++++|||+.|..+ ++|+|++|||+++|+ +|.+++.++||||+|++.|+|
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~-------~~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll 78 (358)
T 1zg3_A 7 LYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNH-------GKPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFF 78 (358)
T ss_dssp CTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHH-------TSCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhc-------CCCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcE
Confidence 334557788999999999999999999999999874 138999999999999 555688999999999999999
Q ss_pred ecccc-CCC-CCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcC--CccchhccCCChhh
Q 017495 96 RCSLQ-NGD-NGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEG--GIPFRRAYGMTQFE 171 (370)
Q Consensus 96 ~~~~~-~~~-~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g--~~~~~~~~g~~~~~ 171 (370)
++... .+. +|..++.|++|+.+++|+.+++ .++++++.+..++.+++.|.+|++.+++| .++|+..+|.++|+
T Consensus 79 ~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~ 155 (358)
T 1zg3_A 79 AKTIVKGKEGDEEEEIAYSLTPPSKLLISGKP---TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWD 155 (358)
T ss_dssp EEEEECCSSSSCCCEEEEEECHHHHTTCTTST---TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHH
T ss_pred EEecccccccCCCCCCEEeCCHHHHHHhCCCC---ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHH
Confidence 96300 000 1111378999999998887766 68889888776677889999999999998 67888888989999
Q ss_pred hccCCchHHH--HHHHHHHhchHHHHHHHHHhhc-CCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC
Q 017495 172 YLGTDPRFNG--VFNEAMSNHSALVMNKILDVYR-GFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS 248 (370)
Q Consensus 172 ~~~~~~~~~~--~~~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~ 248 (370)
++.++++..+ .|++.|........ .+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 156 ~~~~~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 234 (358)
T 1zg3_A 156 FLNKDSESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG 234 (358)
T ss_dssp HHTSGGGHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC
T ss_pred HHhcChhhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc
Confidence 9999999999 99999998777655 7777772 266778999999999999999999999999999999999998887
Q ss_pred CCCCeEEeccCCCCCCCCCEEEecccccCCChhHHHHHHHHHHHhCCC---CcEEEEEeecCCCCCCCCccchhhhhhhh
Q 017495 249 FPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPE---NGKVIIVESILPLVPENQASSHIVFEQDL 325 (370)
Q Consensus 249 ~~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~p---gG~lli~e~~~~~~~~~~~~~~~~~~~d~ 325 (370)
..+++++.+|+++++|..|+|++.++||+|+++++.++|++++++|+| ||+|+|.|...++....+........+++
T Consensus 235 ~~~v~~~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~ 314 (358)
T 1zg3_A 235 NENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDL 314 (358)
T ss_dssp CSSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHH
T ss_pred CCCcEEEeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCH
Confidence 777999999999877767999999999999999999999999999999 99999999988764322111134566788
Q ss_pred HHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 326 FMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 326 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
.|+.. .+++.++.++|.++|+++||+++++++.++..++||++|
T Consensus 315 ~~~~~-~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 315 VMLTM-FLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp HHHHH-HSCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred HHhcc-CCCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 77765 478999999999999999999999999888889999986
No 8
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=2.4e-47 Score=362.08 Aligned_cols=345 Identities=44% Similarity=0.789 Sum_probs=275.9
Q ss_pred HHHHHHH--HHHHhhHHHHHHHHHHhcChHHHHhhcccccCC-CCCCCCHHHHHHHCCCC--CCCCcchHHHHHHHHhcC
Q 017495 18 EIGKLAV--RLANAAVLPMVLKSAIELNVIDIISAASAAEDG-HGELLSASKIAARLPTK--NPDAPFLLDRMLSLLASY 92 (370)
Q Consensus 18 ~~~~~~~--~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~-~~~~~t~~ela~~~~~~--~~~~~~~l~~~L~~L~~~ 92 (370)
+....+. +++.+++.+++|++++++|||+.|... | |++++|++|||++++++ +|.+++.++||||+|++.
T Consensus 21 ~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~-----g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~ 95 (372)
T 1fp1_D 21 EDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKA-----TPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASY 95 (372)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTC-----SSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhc-----CCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhC
Confidence 4555666 999999999999999999999999875 2 22239999999999982 455688999999999999
Q ss_pred CceeccccCCCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcC-CccchhccCCChhh
Q 017495 93 DILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEG-GIPFRRAYGMTQFE 171 (370)
Q Consensus 93 g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g-~~~~~~~~g~~~~~ 171 (370)
|+|++..+++++|+.++.|++|+.+++|+.+++ ..++++++.+..++.+++.|.+|++.++++ .++|+..+|.++|+
T Consensus 96 gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~ 173 (372)
T 1fp1_D 96 SVLTSTTRTIEDGGAERVYGLSMVGKYLVPDES--RGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYE 173 (372)
T ss_dssp TSEEEEEEECTTSCEEEEEEECTTGGGGSTTCT--TCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------
T ss_pred CceEecccccCCCCcCCeEecCHHHHHHhCCCC--CCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHH
Confidence 999963100011111368999999998887653 146888887776677889999999999998 88898888988999
Q ss_pred hccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCC
Q 017495 172 YLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPG 251 (370)
Q Consensus 172 ~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~r 251 (370)
++.++++....|++.|..........+++.++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++
T Consensus 174 ~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~ 253 (372)
T 1fp1_D 174 FMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSG 253 (372)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTT
T ss_pred HHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCC
Confidence 99999999999999999888777788888876577889999999999999999999999999999999999999988788
Q ss_pred CeEEeccCCCCCCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhc
Q 017495 252 VEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQT 331 (370)
Q Consensus 252 v~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 331 (370)
++++.+|+++++|..|+|++.++||||+++++..+|++++++|+|||+|+|.|...++....+........+++.|+..
T Consensus 254 v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~- 332 (372)
T 1fp1_D 254 IEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFIT- 332 (372)
T ss_dssp EEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHH-
T ss_pred CEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhc-
Confidence 9999999998777679999999999999999999999999999999999999998876533221111345677777654
Q ss_pred CCCcccCHHHHHHHHHhCCCCcceEEecCCC-eeEEEEeC
Q 017495 332 TGGRERSKKEYEALAKNSGFSGLEIVCCAYN-SWVMEFHK 370 (370)
Q Consensus 332 ~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~-~~~~e~~k 370 (370)
.+++.++.++|.++|+++||+++++++...+ .++||++|
T Consensus 333 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 333 VGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred cCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 3788999999999999999999999985433 69999986
No 9
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=2.5e-48 Score=363.44 Aligned_cols=315 Identities=26% Similarity=0.367 Sum_probs=277.5
Q ss_pred HHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccC
Q 017495 22 LAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQN 101 (370)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~ 101 (370)
.+++++.+++.+++|++++++|||++|.++ |+|++|||+++|+ +++.++|||++|++.|++.+..
T Consensus 8 ~l~~~~~g~~~~~~l~~a~~lglf~~l~~g---------~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~~-- 72 (332)
T 3i53_A 8 IGLRALADLATPMAVRVAATLRVADHIAAG---------HRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRDG-- 72 (332)
T ss_dssp SCHHHHTCCHHHHHHHHHHHHTHHHHHHTT---------CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT--
T ss_pred HHHHHHHhhHHHHHHHHHHHcChHHHHhcC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEecC--
Confidence 468899999999999999999999999875 8999999999999 9999999999999999999631
Q ss_pred CCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHH-HhhhhhHHHHhcCCccchhccCCChhhhccCCchHH
Q 017495 102 GDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFM-ESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFN 180 (370)
Q Consensus 102 ~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~ 180 (370)
++.|.+|+.++.+..+++ .++.+++.+......+ ..|.+|+++++++.++|+..+|.++|+++.++++..
T Consensus 73 ------~~~y~~t~~s~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 143 (332)
T 3i53_A 73 ------QGVYGLTEFGEQLRDDHA---AGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLS 143 (332)
T ss_dssp ------TSBEEECTTGGGGSTTCT---TCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHH
T ss_pred ------CCeEEcCHhHHHHhcCCc---hhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHH
Confidence 488999999998876655 6788888765444556 899999999999999998889988999999999999
Q ss_pred HHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC-------CCCCe
Q 017495 181 GVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS-------FPGVE 253 (370)
Q Consensus 181 ~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~ 253 (370)
..|++.|........+.+++.++ +++..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++ .++|+
T Consensus 144 ~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~ 222 (332)
T 3i53_A 144 ASFDTLMSHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQ 222 (332)
T ss_dssp HHHHHHHHHHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEE
T ss_pred HHHHHHHHHhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeE
Confidence 99999999887776777777776 77789999999999999999999999999999999888887764 26899
Q ss_pred EEeccCCCCCCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcC
Q 017495 254 HVGGDMFENVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTT 332 (370)
Q Consensus 254 ~~~~D~~~~~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 332 (370)
++.+|+++++|.. |+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++. .+ ...+++.|+.. .
T Consensus 223 ~~~~d~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~--~~-----~~~~d~~~~~~-~ 294 (332)
T 3i53_A 223 VVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE--HA-----GTGMDLRMLTY-F 294 (332)
T ss_dssp EEECCTTSCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-----C-----CHHHHHHHHHH-H
T ss_pred EecCCCCCCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC--Cc-----cHHHHHHHHhh-C
Confidence 9999999877754 99999999999999999999999999999999999999988764 11 24677777766 4
Q ss_pred CCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 333 GGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 333 ~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
+++.++.++|.++|+++||+++++++.+. .+++|++|
T Consensus 295 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 295 GGKERSLAELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp SCCCCCHHHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 89999999999999999999999999988 99999975
No 10
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=6.4e-47 Score=354.22 Aligned_cols=319 Identities=24% Similarity=0.412 Sum_probs=282.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 18 EIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
++...+.+++.+++.+++|++++++|||+.|.++ |+|++|||+++|+ +++.++|||++|++.|+|++
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~~---------~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~ 73 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIESG---------IDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQG 73 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTT---------CCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhCC---------CCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEe
Confidence 5668899999999999999999999999999875 8999999999999 99999999999999999996
Q ss_pred cccCCCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCChhhhccCCc
Q 017495 98 SLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDP 177 (370)
Q Consensus 98 ~~~~~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~ 177 (370)
.. ++.|++|+.++.|. +++ .++.+++.+..+..+ ..|.+|++.++++.++|+..+|.++|+++.+++
T Consensus 74 ~~--------~~~y~~t~~s~~l~-~~~---~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~ 140 (334)
T 2ip2_A 74 DT--------RDGYANTPTSHLLR-DVE---GSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCP 140 (334)
T ss_dssp ET--------TTEEEECHHHHTTS-SST---TCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCH
T ss_pred cC--------CCeEecCHHHHHHh-CCC---ccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhCh
Confidence 31 47899999999887 654 678888877655545 899999999999999998888989999999999
Q ss_pred hHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------C
Q 017495 178 RFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------P 250 (370)
Q Consensus 178 ~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~ 250 (370)
+....|++.| ..+......+++.++ +++ .+|||||||+|..+..+++.+|+.+++++|+|.+++.+++. +
T Consensus 141 ~~~~~f~~~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~ 217 (334)
T 2ip2_A 141 DAGRRFLLAM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGE 217 (334)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCC
Confidence 9999999999 888777888888886 777 99999999999999999999999999999998887776542 5
Q ss_pred CCeEEeccCCCCCCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhh
Q 017495 251 GVEHVGGDMFENVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLA 329 (370)
Q Consensus 251 rv~~~~~D~~~~~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 329 (370)
+++++.+|+++++|.. |+|++.++||+|+++++.++|++++++|+|||+|+|.|...++... ......+++.|+.
T Consensus 218 ~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~----~~~~~~~~~~~~~ 293 (334)
T 2ip2_A 218 RVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEP----SPMSVLWDVHLFM 293 (334)
T ss_dssp SEEEEESCTTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSC----CHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC----cchhHHhhhHhHh
Confidence 7999999999877765 9999999999999999999999999999999999999998765422 1345567777776
Q ss_pred hcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 330 QTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 330 ~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
.. +++.++.++|.++|+++||+++++++.++..++||++|
T Consensus 294 ~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 294 AC-AGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HH-SCCCCBHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred hC-CCcCCCHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 54 78899999999999999999999999988899999986
No 11
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=5.7e-45 Score=346.19 Aligned_cols=337 Identities=24% Similarity=0.370 Sum_probs=279.3
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcc
Q 017495 1 MANSKPKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPF 80 (370)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~ 80 (370)
|+-+.|.+-... .++.+..+++++.+++.+++|++++++|||+.|..+ |+|++|||+++|+ ++.
T Consensus 1 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~~---------~~t~~eLA~~~g~----~~~ 64 (374)
T 1qzz_A 1 MSSSSPGEPLEP---TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLAG---------ADTLAGLADRTDT----HPQ 64 (374)
T ss_dssp ---------CCC---CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHTT---------CCSHHHHHHHHTC----CHH
T ss_pred CCCCCCCCCCCC---CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhCC---------CCCHHHHHHHhCc----CHH
Confidence 455555543322 455778899999999999999999999999999765 8999999999999 999
Q ss_pred hHHHHHHHHhcCCceeccccCCCCCcccc--ceecchhhhhhhcCCCCCCCChhHHHHhhcChhHH-HhhhhhHHHHhcC
Q 017495 81 LLDRMLSLLASYDILRCSLQNGDNGQVER--VYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFM-ESWYHLKDVILEG 157 (370)
Q Consensus 81 ~l~~~L~~L~~~g~l~~~~~~~~~g~~~~--~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g 157 (370)
.++|||++|++.|+|++. + ++ .|++|+.++.|..+++ .++.+++.+...+..+ ..|.+|.+.+++|
T Consensus 65 ~l~r~Lr~L~~~Gll~~~----~----~~~~~y~~t~~s~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 133 (374)
T 1qzz_A 65 ALSRLVRHLTVVGVLEGG----E----KQGRPLRPTRLGMLLADGHP---AQQRAWLDLNGAVSHADLAFTGLLDVVRTG 133 (374)
T ss_dssp HHHHHHHHHHHTTSEECC----C----C-CCCCEECTTGGGGSTTCT---TCHHHHHCTTSHHHHHHGGGGGHHHHHHHS
T ss_pred HHHHHHHHHhhCCCEEEe----C----CCCeEEEEChHHHhhcCCCc---ccHHHHHHHcCChhhHHHHHHHHHHHHhcC
Confidence 999999999999999963 1 35 8999999998887765 6788888776444566 8999999999999
Q ss_pred CccchhccCCChhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEe
Q 017495 158 GIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISF 237 (370)
Q Consensus 158 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~ 237 (370)
.++++..+|.++|+++..+++....|++.|..........++..++ +++..+|||||||+|.++..+++.+|+++++++
T Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~ 212 (374)
T 1qzz_A 134 RPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLV 212 (374)
T ss_dssp CCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEE
T ss_pred CChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEE
Confidence 9999888898999999888999999999998777766777888776 778899999999999999999999999999999
Q ss_pred ehhhHHHhCCCC-------CCCeEEeccCCCCCCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee--cC
Q 017495 238 DLPHVLANAPSF-------PGVEHVGGDMFENVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES--IL 307 (370)
Q Consensus 238 D~p~~~~~a~~~-------~rv~~~~~D~~~~~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~--~~ 307 (370)
|++.+++.+++. ++++++.+|+++++|.. |+|++.+++|+|+++++..+|++++++|+|||+|+|.|. ..
T Consensus 213 D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (374)
T 1qzz_A 213 ELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVE 292 (374)
T ss_dssp ECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH--
T ss_pred eCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhc
Confidence 998888776542 47999999998877765 999999999999999889999999999999999999998 76
Q ss_pred CCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCe-----eEEEEeC
Q 017495 308 PLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNS-----WVMEFHK 370 (370)
Q Consensus 308 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~-----~~~e~~k 370 (370)
++... ......+++.|+... ++..++.++|.++|+++||+++++.+.+... ++++++|
T Consensus 293 ~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 293 GDGAD----RFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp ---------HHHHHHHHHHHHHHH-SCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred CCCCC----cchhhhcchHHHHhC-CCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 54321 133456677776654 7889999999999999999999999988777 8999875
No 12
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=1.2e-44 Score=342.25 Aligned_cols=322 Identities=18% Similarity=0.241 Sum_probs=259.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 18 EIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+....+.+++.+++.+++|++++++|||++|... ++|+|++|||+++|+ +++.++|||++|++.|+|++
T Consensus 14 ~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~-------~~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~ 82 (363)
T 3dp7_A 14 EAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGK-------REGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILL 82 (363)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTC-------TTCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhc-------CCCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEe
Confidence 5677899999999999999999999999999982 138999999999999 99999999999999999986
Q ss_pred cccCCCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccC--CChhhhccC
Q 017495 98 SLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYG--MTQFEYLGT 175 (370)
Q Consensus 98 ~~~~~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g--~~~~~~~~~ 175 (370)
. +++|++|+.+++|..+++ ....+.+ ..+..++.|.+|++++++|.+++...+| .++|+++.+
T Consensus 83 ~---------~~~y~~t~~s~~L~~~~~-----~~~~~~~-~~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~ 147 (363)
T 3dp7_A 83 E---------EDRYVLAKAGWFLLNDKM-----ARVNMEF-NHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQ 147 (363)
T ss_dssp E---------TTEEEECHHHHHHHHCHH-----HHHHHHH-HHHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGG
T ss_pred c---------CCEEecccchHHhhCCCc-----ccchhee-ecHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhh
Confidence 2 478999999998887654 2222322 2356789999999999999988888888 689999998
Q ss_pred CchHHH----HHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC--
Q 017495 176 DPRFNG----VFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-- 249 (370)
Q Consensus 176 ~~~~~~----~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-- 249 (370)
+++..+ .|+..|..... ..++..+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.+++.
T Consensus 148 ~~~~~~~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 223 (363)
T 3dp7_A 148 LPEQVQKSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTA 223 (363)
T ss_dssp SCHHHHHHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHH
Confidence 887665 35555544322 23344443 356789999999999999999999999999999998888877642
Q ss_pred -----CCCeEEeccCCCC---CCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCc-cchh
Q 017495 250 -----PGVEHVGGDMFEN---VPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQA-SSHI 319 (370)
Q Consensus 250 -----~rv~~~~~D~~~~---~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~-~~~~ 319 (370)
++|+++.+|++++ .|.. |+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++...... ....
T Consensus 224 ~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~ 303 (363)
T 3dp7_A 224 GLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLT 303 (363)
T ss_dssp TCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHH
T ss_pred hcCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHH
Confidence 4799999999984 5644 9999999999999999999999999999999999999998876432110 0011
Q ss_pred hhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecC-CCeeEEEEeC
Q 017495 320 VFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCA-YNSWVMEFHK 370 (370)
Q Consensus 320 ~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~~~~e~~k 370 (370)
....++.|+.. .+++.++.++|.++|++|||+++++++.. .+.++|+++|
T Consensus 304 ~~~~~~~~~~~-~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 304 QISLYFTAMAN-GNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp HHHHHHHHSSC-SSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred HhhhhHHhhhC-CCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 12233333332 36788999999999999999999999764 5689999875
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=2.5e-44 Score=339.98 Aligned_cols=324 Identities=24% Similarity=0.371 Sum_probs=280.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCcee
Q 017495 17 EEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILR 96 (370)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 96 (370)
+....++++++.+++.+++|.++.++|||+.|.++ |+|++|||+++++ ++..++|||++|++.|+|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~~---------~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~ 83 (360)
T 1tw3_A 17 QIDALRTLIRLGSLHTPMVVRTAATLRLVDHILAG---------ARTVKALAARTDT----RPEALLRLIRHLVAIGLLE 83 (360)
T ss_dssp CHHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHTT---------CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEE
T ss_pred ccchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhCC---------CCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEE
Confidence 35578889999999999999999999999999765 8999999999999 9999999999999999999
Q ss_pred ccccCCCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChh-HHHhhhhhHHHHhcCCccchhccCCChhhhccC
Q 017495 97 CSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKV-FMESWYHLKDVILEGGIPFRRAYGMTQFEYLGT 175 (370)
Q Consensus 97 ~~~~~~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~ 175 (370)
+.. ++.|++|+.+++|..+++ .++.+++.+...+. .+..|.+|.+.+++|.++++..+|.++|+++..
T Consensus 84 ~~~--------~g~y~~t~~s~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~ 152 (360)
T 1tw3_A 84 EDA--------PGEFVPTEVGELLADDHP---AAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAG 152 (360)
T ss_dssp EEE--------TTEEEECTTGGGGSTTST---TCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHT
T ss_pred ecC--------CCeEEeCHHHHHHhcCCc---hhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHh
Confidence 631 478999999998888776 67888776654333 678999999999999988888889899999988
Q ss_pred CchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC------
Q 017495 176 DPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF------ 249 (370)
Q Consensus 176 ~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~------ 249 (370)
+++....|...|..........+++.++ +++..+|||||||+|.++..+++.+|+++++++|++.+++.+++.
T Consensus 153 ~p~~~~~f~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~ 231 (360)
T 1tw3_A 153 RPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGL 231 (360)
T ss_dssp CHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCC
Confidence 9999999999998877776778888887 788899999999999999999999999999999988787766542
Q ss_pred -CCCeEEeccCCCCCCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec-CCCCCCCCccchhhhhhhhH
Q 017495 250 -PGVEHVGGDMFENVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI-LPLVPENQASSHIVFEQDLF 326 (370)
Q Consensus 250 -~rv~~~~~D~~~~~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~-~~~~~~~~~~~~~~~~~d~~ 326 (370)
++++++.+|+++++|.. |+|++.++||+|+++++.++|++++++|+|||+|+|.|.. .++... ......+++.
T Consensus 232 ~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~ 307 (360)
T 1tw3_A 232 SDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSF----NEQFTELDLR 307 (360)
T ss_dssp TTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCC----SHHHHHHHHH
T ss_pred CCceEEEeCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCC----cchhhhccHH
Confidence 48999999999877765 9999999999999999899999999999999999999988 654321 1234456777
Q ss_pred HhhhcCCCcccCHHHHHHHHHhCCCCcceEEecCCC-----eeEEEEeC
Q 017495 327 MLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYN-----SWVMEFHK 370 (370)
Q Consensus 327 ~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~-----~~~~e~~k 370 (370)
|+... ++..++.++|.++|+++||+++++.+.+.. .++|+++|
T Consensus 308 ~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 308 MLVFL-GGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp HHHHH-SCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred Hhhhc-CCcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 76654 788999999999999999999999988765 78999875
No 14
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=5.6e-43 Score=327.50 Aligned_cols=314 Identities=21% Similarity=0.217 Sum_probs=272.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecccc
Q 017495 21 KLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQ 100 (370)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 100 (370)
+.+.+++.+++.+++|++++++|||+.|.++ |+|++|||+++|+ +++.++|||++|++.|+|++.
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~~---------~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~~-- 72 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQG---------IESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTKQ-- 72 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTTS---------EECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhcC---------CCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEec--
Confidence 5788999999999999999999999999875 8999999999999 999999999999999999852
Q ss_pred CCCCCccccceecchhh-hhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCChhhhccCCchH
Q 017495 101 NGDNGQVERVYGAAPIC-KFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRF 179 (370)
Q Consensus 101 ~~~~g~~~~~y~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~ 179 (370)
++.|++|+.+ +++..+++ .++.+++.+..++..++.|.+|++.++++.++++ + |+++.++++.
T Consensus 73 -------~~~y~~t~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~ 136 (335)
T 2r3s_A 73 -------AEGYRLTSDSAMFLDRQSK---FYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPV 136 (335)
T ss_dssp -------TTEEEECHHHHHHTCTTST---TCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTH
T ss_pred -------CCEEecCHHHHHHhccCCc---HHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHH
Confidence 4899999999 68877766 6778887776555788999999999999887654 3 7888888888
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhcCC--CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------C
Q 017495 180 NGVFNEAMSNHSALVMNKILDVYRGF--DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------P 250 (370)
Q Consensus 180 ~~~~~~~m~~~~~~~~~~l~~~~~~~--~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~ 250 (370)
...|.+.|..........+++.++ + .+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++. +
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~ 215 (335)
T 2r3s_A 137 WVQFAKAMSPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVAS 215 (335)
T ss_dssp HHHHHHHSGGGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCc
Confidence 999999999888877788888887 6 78899999999999999999999999999999988777776642 4
Q ss_pred CCeEEeccCCC-CCCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHh
Q 017495 251 GVEHVGGDMFE-NVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFML 328 (370)
Q Consensus 251 rv~~~~~D~~~-~~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 328 (370)
+++++.+|+++ +.+.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|...++....+ .....+++.|+
T Consensus 216 ~v~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~ 292 (335)
T 2r3s_A 216 RYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP---PDAAAFSLVML 292 (335)
T ss_dssp GEEEEESCTTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS---HHHHHHHHHHH
T ss_pred ceEEEecccccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc---hHHHHHHHHHH
Confidence 79999999998 66665 999999999999999999999999999999999999999876543222 34456677777
Q ss_pred hhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEe
Q 017495 329 AQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFH 369 (370)
Q Consensus 329 ~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~ 369 (370)
....++..++.++|.++|+++||+.+++.+.++..++++++
T Consensus 293 ~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 293 ATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp HHSSSCCCCCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred eeCCCCCcCCHHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 65447889999999999999999999999988777877764
No 15
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=6.7e-42 Score=323.23 Aligned_cols=314 Identities=15% Similarity=0.263 Sum_probs=261.5
Q ss_pred HHHHHHHHHHHHH-hhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCc
Q 017495 16 QEEIGKLAVRLAN-AAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDI 94 (370)
Q Consensus 16 ~~~~~~~~~~~~~-~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~ 94 (370)
..+...++.+++. +++.+++|++++++|||+.|.++ |+|++|||+++|+ +++.++|||++|++.|+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~~---------~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gl 93 (359)
T 1x19_A 27 LLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAEG---------PKDLATLAADTGS----VPPRLEMLLETLRQMRV 93 (359)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTTC---------CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTS
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcCC---------CCCHHHHHHHhCc----ChHHHHHHHHHHHhCCC
Confidence 3466778888886 89999999999999999999875 8999999999999 99999999999999999
Q ss_pred eeccccCCCCCccccceecchhh-hhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCChhhhc
Q 017495 95 LRCSLQNGDNGQVERVYGAAPIC-KFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYL 173 (370)
Q Consensus 95 l~~~~~~~~~g~~~~~y~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~ 173 (370)
|++. ++.|++|+.+ .++..+++....++++++.+. ...+++.|.+|+++++++.+ |+++
T Consensus 94 l~~~---------~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~ 153 (359)
T 1x19_A 94 INLE---------DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQ 153 (359)
T ss_dssp EEEE---------TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCS
T ss_pred eEee---------CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------Cccc
Confidence 9963 3689999975 466655320014677777665 35678999999999998654 5667
Q ss_pred cCCch---HHHHHHHHHHhchH-HHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC-
Q 017495 174 GTDPR---FNGVFNEAMSNHSA-LVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS- 248 (370)
Q Consensus 174 ~~~~~---~~~~~~~~m~~~~~-~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~- 248 (370)
.++++ ....|...|..... .....+++.++ +++..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++
T Consensus 154 ~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~ 232 (359)
T 1x19_A 154 VPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNEN 232 (359)
T ss_dssp SCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHH
T ss_pred ccCchhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHH
Confidence 77788 88999999998887 77788888887 88889999999999999999999999999999999888887753
Q ss_pred ------CCCCeEEeccCCC-CCCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhh
Q 017495 249 ------FPGVEHVGGDMFE-NVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVF 321 (370)
Q Consensus 249 ------~~rv~~~~~D~~~-~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~ 321 (370)
.++++++.+|+++ +.+.+|+|++.++||+|+++++.++|++++++|+|||+|+|.|...++. ..+ ....
T Consensus 233 ~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~---~~~~ 308 (359)
T 1x19_A 233 AAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP-ENP---NFDY 308 (359)
T ss_dssp HHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT-TSC---CHHH
T ss_pred HHhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC-CCc---hHHH
Confidence 2469999999998 5666699999999999999889999999999999999999999988664 221 1122
Q ss_pred hhhhHHhhhcCCCcc----cCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 322 EQDLFMLAQTTGGRE----RSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 322 ~~d~~~~~~~~~~~~----~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
.+ .|+....+++. ++.++|.++|+++||+++++.+.+ ..++++++|
T Consensus 309 ~~--~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 309 LS--HYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp HH--HHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred HH--HHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 22 33332335666 899999999999999999999987 888999987
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=4.7e-42 Score=323.46 Aligned_cols=307 Identities=16% Similarity=0.238 Sum_probs=256.2
Q ss_pred HHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCC
Q 017495 23 AVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNG 102 (370)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 102 (370)
+++++.+++.+++|++++++|||++|.+ |+|++|||+++|+ +++.++|||++|++.|+|++.
T Consensus 28 l~~~~~~~~~~~~l~~a~~lgif~~l~~----------~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll~~~---- 89 (352)
T 3mcz_A 28 LVKLSDQYRQSAILHYAVADKLFDLTQT----------GRTPAEVAASFGM----VEGKAAILLHALAALGLLTKE---- 89 (352)
T ss_dssp HHHHHHTHHHHHHHHHHHHTTHHHHTTS----------CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----
T ss_pred HHHHHHHHHHHHHHHHHHHCChHHHhCC----------CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCeEec----
Confidence 8999999999999999999999999953 7999999999999 999999999999999999963
Q ss_pred CCCccccceecchhhh-hhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCcc-chhccCCChhhhccCCchHH
Q 017495 103 DNGQVERVYGAAPICK-FLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIP-FRRAYGMTQFEYLGTDPRFN 180 (370)
Q Consensus 103 ~~g~~~~~y~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~-~~~~~g~~~~~~~~~~~~~~ 180 (370)
++.|++|+.++ ++..+.+ .+++.++.+. ...++.|.+|++.+++|.+. |+. ..++..+++..
T Consensus 90 -----~~~y~~t~~s~~~l~~~~~---~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~------~~~~~~~~~~~ 153 (352)
T 3mcz_A 90 -----GDAFRNTALTERYLTTTSA---DYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQ------ESRFAHDTRAR 153 (352)
T ss_dssp -----TTEEEECHHHHHHHSTTCT---TCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSH------HHHTTTCHHHH
T ss_pred -----CCeeecCHHHHhhccCCCh---hhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCccc------ccccccCHHHH
Confidence 46799999997 5665555 7788777653 45778999999999998754 222 12346778888
Q ss_pred HHHHHHHHhchHHHHHHHHHhhcCCCC-CCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCC
Q 017495 181 GVFNEAMSNHSALVMNKILDVYRGFDG-LKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGV 252 (370)
Q Consensus 181 ~~~~~~m~~~~~~~~~~l~~~~~~~~~-~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv 252 (370)
..|.+.|...... +..++..++ +.+ ..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++. +++
T Consensus 154 ~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v 231 (352)
T 3mcz_A 154 DAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRV 231 (352)
T ss_dssp HHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGE
T ss_pred HHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCce
Confidence 9999999874333 346777777 666 899999999999999999999999999999998887766542 479
Q ss_pred eEEeccCCCC---CCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHh
Q 017495 253 EHVGGDMFEN---VPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFML 328 (370)
Q Consensus 253 ~~~~~D~~~~---~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 328 (370)
+++.+|+++. .+.. |+|++.++||+|+++++..+|++++++|+|||+|+|.|.+.++....+ .....+++.|+
T Consensus 232 ~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~ 308 (352)
T 3mcz_A 232 EFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTP---ALSADFSLHMM 308 (352)
T ss_dssp EEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSS---HHHHHHHHHHH
T ss_pred EEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCC---chHHHhhHHHH
Confidence 9999999984 5555 999999999999999999999999999999999999999887653322 34556788887
Q ss_pred hhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 329 AQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 329 ~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
....++..++.++|.++|+++||++++.. .+..++++++|
T Consensus 309 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 309 VNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp HHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred hhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 65557889999999999999999999843 35678888876
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.85 E-value=1.6e-20 Score=168.53 Aligned_cols=164 Identities=15% Similarity=0.162 Sum_probs=120.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC--CCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCCCEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY--PCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRGDAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~D~i~~~~ 273 (370)
.++..+|||||||+|..+..+++.+ |+++++++|+ +.+++.++++ .+|+++++|+.+ +.+..|+|++.+
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4678899999999999999999985 6789999998 9998877642 579999999988 665569999999
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhh-hhhhHHhh-hc------------CCCcccCH
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVF-EQDLFMLA-QT------------TGGRERSK 339 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~-~~d~~~~~-~~------------~~~~~~t~ 339 (370)
+||++++++...+|++++++|||||+|++.|.....++... ..... ..++.... .. .--...+.
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~--~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~ 225 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVG--ELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 225 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHH--HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCH
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCH
Confidence 99999998888999999999999999999999876542110 00000 00000000 00 00123588
Q ss_pred HHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 340 KEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 340 ~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
+++.++|++|||+.++++.--.....+.+.|
T Consensus 226 ~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 226 ETHKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp HHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 9999999999999998754323333344554
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.82 E-value=1.9e-19 Score=158.93 Aligned_cols=174 Identities=16% Similarity=0.167 Sum_probs=127.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCC-CCCCC-CE
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFE-NVPRG-DA 268 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~-~~p~~-D~ 268 (370)
..++..+....+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+.. |+
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 34444444344678999999999999999999999999999998 888776654 2479999999988 55544 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhH-----------H-hhhcCCCcc
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLF-----------M-LAQTTGGRE 336 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-----------~-~~~~~~~~~ 336 (370)
|++..++|++++++...+|++++++|+|||++++.+...++...... .....+.... . .........
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIEN-LNKTIWRQYVENSGLTEEEIAAGYERSKLDKD 191 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHH-HHHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhh-HHHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence 99999999999888788999999999999999999987755311000 0000000000 0 000012345
Q ss_pred cCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 337 RSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 337 ~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
++.++|.++|++|||+.+++.....+.+++..+|
T Consensus 192 ~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~ 225 (234)
T 3dtn_A 192 IEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRK 225 (234)
T ss_dssp CBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred cCHHHHHHHHHHcCCCceeeeeeecceeEEEEEe
Confidence 6889999999999999999888777777665543
No 19
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.77 E-value=3.5e-19 Score=155.18 Aligned_cols=169 Identities=15% Similarity=0.239 Sum_probs=120.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPR 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~ 265 (370)
...++..++ .++. +|||||||+|.++..+++. ++.+++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 33 ~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 33 AENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 344555554 4444 9999999999999999998 8889999998 8888776643 479999999988 6665
Q ss_pred C--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhh-hhHHhhhcCCCcccCHHHH
Q 017495 266 G--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQ-DLFMLAQTTGGRERSKKEY 342 (370)
Q Consensus 266 ~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~t~~e~ 342 (370)
. |+|++..++||+++. ..+|++++++|+|||++++.+...+............... .+..... .+...++.++|
T Consensus 110 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 186 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDV--ATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNR-KNISQENVERF 186 (219)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHH-HHSSHHHHHHH
T ss_pred ccccEEEECchHhhccCH--HHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhh-hccccCCHHHH
Confidence 4 999999999999654 6899999999999999999876543310000000000000 0000000 12334578999
Q ss_pred HHHHHhCCCCcceEEecCCCeeEEEEe
Q 017495 343 EALAKNSGFSGLEIVCCAYNSWVMEFH 369 (370)
Q Consensus 343 ~~ll~~aGf~~v~~~~~~~~~~~~e~~ 369 (370)
.++|+++||+++++.....+.+++..+
T Consensus 187 ~~~l~~aGf~~v~~~~~~~~~~~~~~k 213 (219)
T 3dlc_A 187 QNVLDEIGISSYEIILGDEGFWIIISK 213 (219)
T ss_dssp HHHHHHHTCSSEEEEEETTEEEEEEBC
T ss_pred HHHHHHcCCCeEEEEecCCceEEEEec
Confidence 999999999999999887777765543
No 20
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.76 E-value=7.1e-18 Score=147.25 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=125.2
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~ 266 (370)
..++..+. ..+..+|||||||+|.++..+++.+ |..+++++|. +.+++.+++. .+++++.+|+.+ +.+..
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 34555555 6778899999999999999999997 8889999998 8888777643 479999999987 55554
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
|+|++..++|++++. ..+|++++++|+|||++++.++......... .....++.++|.+
T Consensus 106 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 166 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSEP--LKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PPEEVYSEWEVGL 166 (219)
T ss_dssp CEEEEEEESCGGGCSSH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CGGGSCCHHHHHH
T ss_pred CeeEEEeehhhhhcCCH--HHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------chhcccCHHHHHH
Confidence 999999999999765 6899999999999999999998765431111 0122357899999
Q ss_pred HHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 345 LAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 345 ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
+++++||+++++.........+.++|
T Consensus 167 ~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 167 ILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999988887777777665
No 21
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.76 E-value=1.7e-17 Score=144.98 Aligned_cols=164 Identities=17% Similarity=0.161 Sum_probs=120.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--CCCeEEeccCCC-CCCCC-CEEEe
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--PGVEHVGGDMFE-NVPRG-DAIFL 271 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~D~~~-~~p~~-D~i~~ 271 (370)
.++..+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 3444444 446789999999999999999986 679999998 8888776643 479999999988 55543 99999
Q ss_pred cccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHh------h-hcCCCcccCHHHHHH
Q 017495 272 KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFML------A-QTTGGRERSKKEYEA 344 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~------~-~~~~~~~~t~~e~~~ 344 (370)
.+++|++++++...+|++++++|+|||++++.++..+... ........... . .......++.++|.+
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQD------AYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQT 186 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHH------HHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHH
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChH------HHHHHHHHHHhCCCccchhhcchhhcCCHHHHHH
Confidence 9999999998877799999999999999999987654321 00000000000 0 000112348899999
Q ss_pred HHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 345 LAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 345 ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
+|+++||+++.... ....+++.+.|
T Consensus 187 ~l~~aGf~v~~~~~-~~~~w~~~~~~ 211 (220)
T 3hnr_A 187 IFENNGFHVTFTRL-NHFVWVMEATK 211 (220)
T ss_dssp HHHHTTEEEEEEEC-SSSEEEEEEEE
T ss_pred HHHHCCCEEEEeec-cceEEEEeehh
Confidence 99999998665544 47888887654
No 22
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.74 E-value=1.2e-17 Score=149.96 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=121.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----CCCeEEeccCCC-CCCCC--
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----PGVEHVGGDMFE-NVPRG-- 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~-~~p~~-- 266 (370)
...++..+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+
T Consensus 44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 345555555 6678899999999999999999987 779999998 8888776543 589999999988 66544
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
|+|++..++||+++++...+|++++++|+|||++++.++..+..... ...+..... ..+...++.++|.+++
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~l 193 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENW------DDEFKEYVK--QRKYTLITVEEYADIL 193 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGC------CHHHHHHHH--HHTCCCCCHHHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccc------hHHHHHHHh--cCCCCCCCHHHHHHHH
Confidence 99999999999987888999999999999999999999876541110 001111111 1244567899999999
Q ss_pred HhCCCCcceEEecC
Q 017495 347 KNSGFSGLEIVCCA 360 (370)
Q Consensus 347 ~~aGf~~v~~~~~~ 360 (370)
+++||+++++....
T Consensus 194 ~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 194 TACNFKNVVSKDLS 207 (266)
T ss_dssp HHTTCEEEEEEECH
T ss_pred HHcCCeEEEEEeCC
Confidence 99999999887653
No 23
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.74 E-value=2.2e-17 Score=143.85 Aligned_cols=160 Identities=18% Similarity=0.127 Sum_probs=113.8
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--CCCeEEeccCCCCCCCC--CEEE
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--PGVEHVGGDMFENVPRG--DAIF 270 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~D~~~~~p~~--D~i~ 270 (370)
..++..+....+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+..+.. |+|+
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 345555544556789999999999999999998 569999998 8888877653 57999999998854433 9999
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC------CcccCHHHHHH
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG------GRERSKKEYEA 344 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~~t~~e~~~ 344 (370)
+.+++||+++++...+|++++++|+|||++++.+...+.......... ............+ ....+.++|.+
T Consensus 113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (218)
T 3ou2_A 113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS--EPEVAVRRTLQDGRSFRIVKVFRSPAELTE 190 (218)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEEEECTTSCEEEEECCCCCHHHHHH
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc--ccccceeeecCCcchhhHhhcCCCHHHHHH
Confidence 999999999988889999999999999999999987643211100000 0000000000001 12358999999
Q ss_pred HHHhCCCCcceEEec
Q 017495 345 LAKNSGFSGLEIVCC 359 (370)
Q Consensus 345 ll~~aGf~~v~~~~~ 359 (370)
+|+++||++......
T Consensus 191 ~l~~aGf~v~~~~~~ 205 (218)
T 3ou2_A 191 RLTALGWSCSVDEVH 205 (218)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHCCCEEEeeecc
Confidence 999999995544443
No 24
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.74 E-value=4.2e-17 Score=144.58 Aligned_cols=152 Identities=16% Similarity=0.290 Sum_probs=116.6
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC---CCCCC--C
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE---NVPRG--D 267 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~---~~p~~--D 267 (370)
....+...++.+++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++.+ |
T Consensus 28 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD 103 (240)
T 3dli_A 28 VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLD 103 (240)
T ss_dssp HHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBS
T ss_pred HHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCee
Confidence 33444444444567789999999999999999987 557899998 8888887764 8999999876 45543 9
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHH
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 347 (370)
+|++..++||+++++...+|++++++|||||++++..+.... ........ ....+...++.++|.++++
T Consensus 104 ~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---------~~~~~~~~--~~~~~~~~~~~~~l~~~l~ 172 (240)
T 3dli_A 104 GVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS---------LYSLINFY--IDPTHKKPVHPETLKFILE 172 (240)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS---------HHHHHHHT--TSTTCCSCCCHHHHHHHHH
T ss_pred EEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch---------hHHHHHHh--cCccccccCCHHHHHHHHH
Confidence 999999999999888889999999999999999998765322 11111111 1112345678999999999
Q ss_pred hCCCCcceEEecC
Q 017495 348 NSGFSGLEIVCCA 360 (370)
Q Consensus 348 ~aGf~~v~~~~~~ 360 (370)
++||+++++....
T Consensus 173 ~aGf~~~~~~~~~ 185 (240)
T 3dli_A 173 YLGFRDVKIEFFE 185 (240)
T ss_dssp HHTCEEEEEEEEC
T ss_pred HCCCeEEEEEEec
Confidence 9999999877654
No 25
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.73 E-value=1.1e-17 Score=150.07 Aligned_cols=154 Identities=19% Similarity=0.313 Sum_probs=117.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~ 266 (370)
+..++..+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .+++++.+|+.+ +++.+
T Consensus 26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~ 102 (260)
T 1vl5_A 26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 102 (260)
T ss_dssp HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence 455666665 66788999999999999999999875 8999998 8888776542 579999999988 66643
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHH-hhhcCCCcccCHHHHH
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFM-LAQTTGGRERSKKEYE 343 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~t~~e~~ 343 (370)
|+|++..++||+++. ..+|++++++|+|||+|++.+...+..+ ....++.... +....+...++.++|.
T Consensus 103 ~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (260)
T 1vl5_A 103 RFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEND------AFDVFYNYVEKERDYSHHRAWKKSDWL 174 (260)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSH------HHHHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred CEEEEEEhhhhHhcCCH--HHHHHHHHHHcCCCCEEEEEEcCCCCCH------HHHHHHHHHHHhcCccccCCCCHHHHH
Confidence 999999999999876 5899999999999999999988765421 1111111111 1111134567899999
Q ss_pred HHHHhCCCCcceEEec
Q 017495 344 ALAKNSGFSGLEIVCC 359 (370)
Q Consensus 344 ~ll~~aGf~~v~~~~~ 359 (370)
++|+++||+++.+...
T Consensus 175 ~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 175 KMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHTCEEEEEEEE
T ss_pred HHHHHCCCeEEEEEEe
Confidence 9999999998877654
No 26
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.73 E-value=3.8e-18 Score=149.65 Aligned_cols=161 Identities=14% Similarity=0.118 Sum_probs=115.2
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCC-C-CEEEeccccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPR-G-DAIFLKWMLH 276 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~-~-D~i~~~~vLh 276 (370)
++..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .+++++.+|+.+ +.+. . |+|++..++|
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 3478999999999999999999877 8999998 8888776542 679999999988 5554 3 9999999987
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC--------------------Ccc
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG--------------------GRE 336 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--------------------~~~ 336 (370)
++..++...+|++++++|+|||++++.++..+...... ..........++....+. ...
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (227)
T 1ve3_A 115 HFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRL-KESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNV 193 (227)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGC-CC---------CCEEEEETTTTEEEEEC-----CCEEEEEC
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHH-HhhhhcccceeecccccCccccEEEEEeccchhhheeehhh
Confidence 77777888999999999999999999887532110000 000000000000000000 111
Q ss_pred cCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 337 RSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 337 ~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
++ .+|.++|+++||+.+++..++...++++.+|
T Consensus 194 w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 194 WG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp CC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred hc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 12 4899999999999999999877778888874
No 27
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.72 E-value=2.3e-17 Score=148.29 Aligned_cols=163 Identities=15% Similarity=0.115 Sum_probs=117.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCC-CCCCC-CEEEecc-cccCCCh
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFE-NVPRG-DAIFLKW-MLHGWTD 280 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~-~~p~~-D~i~~~~-vLh~~~d 280 (370)
++..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. +|||+++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 456899999999999999999874 47999998 8888877653 589999999988 55444 9999998 9999865
Q ss_pred -hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccch---------h-----------hhhhhhHHhhhcCC------
Q 017495 281 -EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSH---------I-----------VFEQDLFMLAQTTG------ 333 (370)
Q Consensus 281 -~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~---------~-----------~~~~d~~~~~~~~~------ 333 (370)
++...+|++++++|+|||+|++.+...++......... . ...+++.+.....+
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHH 206 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEE
Confidence 46779999999999999999997654443211100000 0 00001111100001
Q ss_pred -----CcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 334 -----GRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 334 -----~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
...++.++|.++|+++||+++++........++.++|
T Consensus 207 ~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 207 EESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2345899999999999999999877766667777765
No 28
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.72 E-value=9.9e-17 Score=145.99 Aligned_cols=162 Identities=15% Similarity=0.140 Sum_probs=120.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~ 266 (370)
...++..+. ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. ++++++.+|+.+ .|..
T Consensus 53 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~ 129 (287)
T 1kpg_A 53 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEP 129 (287)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCC
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCC
Confidence 345666665 66788999999999999999997765 49999998 8887766542 479999999865 3343
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCC-----CCccchhhhhhhhHHhhhcCCCcccCHH
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPE-----NQASSHIVFEQDLFMLAQTTGGRERSKK 340 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 340 (370)
|+|++..+|||+++++...+|++++++|||||++++.+...+.... .+.........+.......+++..++.+
T Consensus 130 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 209 (287)
T 1kpg_A 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIP 209 (287)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred eeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHH
Confidence 9999999999997767789999999999999999999987654210 0000000011111111123467778999
Q ss_pred HHHHHHHhCCCCcceEEec
Q 017495 341 EYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 341 e~~~ll~~aGf~~v~~~~~ 359 (370)
+|.++++++||+++++...
T Consensus 210 ~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 210 MVQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHhCCcEEEEEEeC
Confidence 9999999999999988765
No 29
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.72 E-value=8.2e-17 Score=145.37 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=120.9
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPR 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~ 265 (370)
...++..++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 455666665 6778899999999999999999987 689999998 8877766532 479999999988 6665
Q ss_pred C--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHH
Q 017495 266 G--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYE 343 (370)
Q Consensus 266 ~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~ 343 (370)
+ |+|++..++||+++. ..+|++++++|+|||++++.+......... ......+...... .+...++.++|.
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~ 200 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVEG----AKKEAVDAFRAGG-GVLSLGGIDEYE 200 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCCH----HHHHHHHHHHHHH-TCCCCCCHHHHH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCCh----hHHHHHHHHHhhc-CccCCCCHHHHH
Confidence 3 999999999999865 689999999999999999999876542111 1111112111111 356678999999
Q ss_pred HHHHhCCCCcceEEecC
Q 017495 344 ALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 344 ~ll~~aGf~~v~~~~~~ 360 (370)
++++++||+++++...+
T Consensus 201 ~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 201 SDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHTTCEEEEEEECH
T ss_pred HHHHHcCCeEEEEEECc
Confidence 99999999999887653
No 30
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.71 E-value=1.1e-16 Score=146.44 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=117.9
Q ss_pred HHHHHHhh---cCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-C
Q 017495 195 MNKILDVY---RGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-N 262 (370)
Q Consensus 195 ~~~l~~~~---~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~ 262 (370)
...++..+ .+..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +
T Consensus 67 ~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145 (297)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred HHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence 44555556 136778899999999999999999986 469999998 8887766542 579999999988 6
Q ss_pred CCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHH
Q 017495 263 VPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKK 340 (370)
Q Consensus 263 ~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 340 (370)
++.+ |+|++..++||+++ ...+|++++++|||||+|++.++...+..... . ...+.... . .....+.+
T Consensus 146 ~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~---~~~~~~~~-~-~~~~~~~~ 215 (297)
T 2o57_A 146 CEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKS---S---IQPILDRI-K-LHDMGSLG 215 (297)
T ss_dssp SCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG---G---GHHHHHHH-T-CSSCCCHH
T ss_pred CCCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchH---H---HHHHHHHh-c-CCCCCCHH
Confidence 6654 99999999999987 47999999999999999999998765432111 0 11111111 1 23356899
Q ss_pred HHHHHHHhCCCCcceEEec
Q 017495 341 EYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 341 e~~~ll~~aGf~~v~~~~~ 359 (370)
+|.++|+++||+++++...
T Consensus 216 ~~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 216 LYRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp HHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHCCCeEEEEEEC
Confidence 9999999999999988765
No 31
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.71 E-value=2.3e-17 Score=147.30 Aligned_cols=149 Identities=21% Similarity=0.263 Sum_probs=116.2
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----CCCeEEeccCCC-CCCCC--C
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----PGVEHVGGDMFE-NVPRG--D 267 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~-~~p~~--D 267 (370)
..++..+. ..+..+|||||||+|.++..+++.. ..+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 45555554 5577899999999999999999876 557999998 8887776543 579999999987 55543 9
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHH
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 347 (370)
+|++.++|||+++++...+|++++++|+|||++++.+........ ..+. ......++.++|.++|+
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~~-----~~~~~~~~~~~~~~~l~ 226 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVDK-----EDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEET-----TTTEEEBCHHHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---------eecc-----cCCcccCCHHHHHHHHH
Confidence 999999999999888899999999999999999999975543210 0110 11233578999999999
Q ss_pred hCCCCcceEEecC
Q 017495 348 NSGFSGLEIVCCA 360 (370)
Q Consensus 348 ~aGf~~v~~~~~~ 360 (370)
++||+++++....
T Consensus 227 ~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 227 ESGVRVVKEAFQE 239 (254)
T ss_dssp HHTCCEEEEEECT
T ss_pred HCCCEEEEeeecC
Confidence 9999999887653
No 32
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.70 E-value=1.1e-16 Score=141.82 Aligned_cols=154 Identities=19% Similarity=0.254 Sum_probs=116.9
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~ 266 (370)
...++..+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .+++++.+|+.+ +++.+
T Consensus 10 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 10 LGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred cchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence 345555565 77889999999999999999998865 8999998 8888776542 579999999987 55543
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhH-HhhhcCCCcccCHHHHH
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLF-MLAQTTGGRERSKKEYE 343 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~t~~e~~ 343 (370)
|+|++.+++||+++. ..+|++++++|+|||++++.+...+.. . ....+.... ......+...++.++|.
T Consensus 87 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (239)
T 1xxl_A 87 SFDIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPED---P---VLDEFVNHLNRLRDPSHVRESSLSEWQ 158 (239)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSS---H---HHHHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred cEEEEEECCchhhccCH--HHHHHHHHHHcCCCcEEEEEEcCCCCC---h---hHHHHHHHHHHhccccccCCCCHHHHH
Confidence 999999999999865 689999999999999999999876542 1 111111111 11111234567899999
Q ss_pred HHHHhCCCCcceEEec
Q 017495 344 ALAKNSGFSGLEIVCC 359 (370)
Q Consensus 344 ~ll~~aGf~~v~~~~~ 359 (370)
++|+++||+++.+...
T Consensus 159 ~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 159 AMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHCCCcEEEEEee
Confidence 9999999998877654
No 33
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.70 E-value=1.9e-16 Score=145.27 Aligned_cols=163 Identities=18% Similarity=0.221 Sum_probs=122.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~ 266 (370)
+..++..+. ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. ++++++.+|+.+. +..
T Consensus 61 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 137 (302)
T 3hem_A 61 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEP 137 (302)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCC
T ss_pred HHHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCC
Confidence 445666665 67788999999999999999999877 89999998 8888777642 3799999998765 444
Q ss_pred -CEEEecccccCCCh-------hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCc-----cchhhhhhhhHHhhhcCC
Q 017495 267 -DAIFLKWMLHGWTD-------EHCLKLLKNCWEALPENGKVIIVESILPLVPENQA-----SSHIVFEQDLFMLAQTTG 333 (370)
Q Consensus 267 -D~i~~~~vLh~~~d-------~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~ 333 (370)
|+|++..++||+++ ++...+|++++++|||||++++.+...++...... ........++......++
T Consensus 138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (302)
T 3hem_A 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPG 217 (302)
T ss_dssp CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTT
T ss_pred ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCC
Confidence 99999999999954 56779999999999999999999987764210000 000000012222222356
Q ss_pred CcccCHHHHHHHHHhCCCCcceEEecC
Q 017495 334 GRERSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 334 ~~~~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
+..++.+++.++++++||+++++...+
T Consensus 218 ~~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 218 GRLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 778899999999999999999887754
No 34
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.70 E-value=2.6e-16 Score=145.10 Aligned_cols=162 Identities=14% Similarity=0.044 Sum_probs=121.9
Q ss_pred HHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEecc
Q 017495 187 MSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGD 258 (370)
Q Consensus 187 m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D 258 (370)
+..........+++.+..+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|
T Consensus 97 ~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 175 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN 175 (312)
T ss_dssp HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 4444444455566665545677899999999999999999986 678999998 8888776642 479999999
Q ss_pred CCC-CCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCc
Q 017495 259 MFE-NVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGR 335 (370)
Q Consensus 259 ~~~-~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 335 (370)
+.+ +++.+ |+|++..++|+++ ...+|++++++|||||++++.+....+...... .......... ...
T Consensus 176 ~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~ 245 (312)
T 3vc1_A 176 MLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPS-----KWVSQINAHF--ECN 245 (312)
T ss_dssp TTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCC-----HHHHHHHHHH--TCC
T ss_pred hhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchh-----HHHHHHHhhh--cCC
Confidence 988 66543 9999999999984 579999999999999999999987765321110 1111111111 123
Q ss_pred ccCHHHHHHHHHhCCCCcceEEec
Q 017495 336 ERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 336 ~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
.++.++|.++|+++||+++++...
T Consensus 246 ~~s~~~~~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 246 IHSRREYLRAMADNRLVPHTIVDL 269 (312)
T ss_dssp CCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred CCCHHHHHHHHHHCCCEEEEEEeC
Confidence 678999999999999999988775
No 35
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.69 E-value=3.5e-17 Score=141.17 Aligned_cols=144 Identities=14% Similarity=0.117 Sum_probs=114.1
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-CCCCeEEeccCCC-CCCCC--CEEEecccccCCChhH
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-FPGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEH 282 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~ 282 (370)
..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+.+ |+|++.+++||++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 679999999999999999987 568999998 888887765 3689999999987 55543 9999999999998777
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecC-C
Q 017495 283 CLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCA-Y 361 (370)
Q Consensus 283 ~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~ 361 (370)
...+|++++++|+|||++++.++..+... .+.. . ......++.++|.++|+++||+++++...+ .
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~------~~~~-------~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 185 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLE------PMYH-------P-VATAYRWPLPELAQALETAGFQVTSSHWDPRF 185 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCE------EECC-------S-SSCEEECCHHHHHHHHHHTTEEEEEEEECTTS
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchh------hhhc-------h-hhhhccCCHHHHHHHHHHCCCcEEEEEecCCC
Confidence 88999999999999999999887654310 0000 0 012345689999999999999999988764 4
Q ss_pred CeeEEE
Q 017495 362 NSWVME 367 (370)
Q Consensus 362 ~~~~~e 367 (370)
++..+.
T Consensus 186 p~~~l~ 191 (203)
T 3h2b_A 186 PHAYLT 191 (203)
T ss_dssp SEEEEE
T ss_pred cchhhh
Confidence 444443
No 36
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.69 E-value=5.3e-16 Score=139.31 Aligned_cols=152 Identities=13% Similarity=0.150 Sum_probs=115.3
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCCC--CEEE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPRG--DAIF 270 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~~--D~i~ 270 (370)
...+...++ ..+..+|||||||+|.++..+++ ++.+++++|+ +.+++.++...+++++.+|+.+ +++.+ |+|+
T Consensus 23 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 23 VNAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 345555555 66789999999999999999998 7889999999 9999988877799999999987 66543 9999
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCC
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSG 350 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 350 (370)
+.+++||+++. ..+|++++++|| ||++++.+...+..... +....+... ... .+...++.+++. +|+++|
T Consensus 100 ~~~~l~~~~~~--~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~----~~~~~~~~~-~~~-~~~~~~~~~~~~-~l~~aG 169 (261)
T 3ege_A 100 SILAIHHFSHL--EKSFQEMQRIIR-DGTIVLLTFDIRLAQRI----WLYDYFPFL-WED-ALRFLPLDEQIN-LLQENT 169 (261)
T ss_dssp EESCGGGCSSH--HHHHHHHHHHBC-SSCEEEEEECGGGCCCC----GGGGTCHHH-HHH-HHTSCCHHHHHH-HHHHHH
T ss_pred EcchHhhccCH--HHHHHHHHHHhC-CcEEEEEEcCCchhHHH----HHHHHHHHH-hhh-hhhhCCCHHHHH-HHHHcC
Confidence 99999999754 689999999999 99999998854332110 111111110 111 123345678899 999999
Q ss_pred CCcceEEec
Q 017495 351 FSGLEIVCC 359 (370)
Q Consensus 351 f~~v~~~~~ 359 (370)
|+.+++...
T Consensus 170 F~~v~~~~~ 178 (261)
T 3ege_A 170 KRRVEAIPF 178 (261)
T ss_dssp CSEEEEEEC
T ss_pred CCceeEEEe
Confidence 999987765
No 37
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.69 E-value=1.4e-16 Score=142.30 Aligned_cols=153 Identities=15% Similarity=0.078 Sum_probs=115.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPR 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~ 265 (370)
...++..+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.
T Consensus 25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 345555565 6778899999999999999999987 678999998 8888776542 479999999987 4433
Q ss_pred C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 266 G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
. |+|++..++|++++. ..+|++++++|||||+|++.++.....+... . ...... .......++.++|.+
T Consensus 103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~---~---~~~~~~--~~~~~~~~~~~~~~~ 172 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATE---E---IAQACG--VSSTSDFLTLPGLVG 172 (256)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSH---H---HHHTTT--CSCGGGSCCHHHHHH
T ss_pred CCCEEEECCChHhcCCH--HHHHHHHHHHcCCCeEEEEecCcccCCCChH---H---HHHHHh--cccccccCCHHHHHH
Confidence 3 999999999998854 6899999999999999999998664432111 0 000000 011224568999999
Q ss_pred HHHhCCCCcceEEec
Q 017495 345 LAKNSGFSGLEIVCC 359 (370)
Q Consensus 345 ll~~aGf~~v~~~~~ 359 (370)
+|+++||+++++...
T Consensus 173 ~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 173 AFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHTTTBCCCEEEEC
T ss_pred HHHHCCCeeEEEEeC
Confidence 999999999887654
No 38
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.68 E-value=1e-16 Score=147.29 Aligned_cols=165 Identities=17% Similarity=0.150 Sum_probs=118.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHH-hhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC-CEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMIT-SRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG-DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~-D~i~~~~ 273 (370)
..+..+|||||||+|.++..++ ...|+.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 5678899999999999999986 5689999999998 8888776542 359999999988 55544 9999999
Q ss_pred cccCCChhH-HHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhh--------hhhhhHHhhhcCC--CcccCHHHH
Q 017495 274 MLHGWTDEH-CLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIV--------FEQDLFMLAQTTG--GRERSKKEY 342 (370)
Q Consensus 274 vLh~~~d~~-~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~--------~~~d~~~~~~~~~--~~~~t~~e~ 342 (370)
++||++++. ...+|++++++|+|||+|++.+...+....... .+.. ......+...... ...++.+++
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDS-PWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTC-CCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccc-cceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 999996554 457999999999999999998876654322111 0000 0000001111001 134799999
Q ss_pred HHHHHhCCCCcceEEecCC-CeeEEEEeC
Q 017495 343 EALAKNSGFSGLEIVCCAY-NSWVMEFHK 370 (370)
Q Consensus 343 ~~ll~~aGf~~v~~~~~~~-~~~~~e~~k 370 (370)
.++|+++||+++++..... ....+.++|
T Consensus 275 ~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 275 RAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 9999999999999887543 333555554
No 39
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.68 E-value=1.2e-16 Score=141.24 Aligned_cols=163 Identities=18% Similarity=0.136 Sum_probs=116.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCC-CCCCC-CEEEe-cccccCCCh
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFE-NVPRG-DAIFL-KWMLHGWTD 280 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~-~~p~~-D~i~~-~~vLh~~~d 280 (370)
.+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++ ..++||+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4668999999999999999999876 8999998 8888877653 579999999987 44444 99995 559999854
Q ss_pred -hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccch--------------------hhhhhhhHHhhhcCCC-----
Q 017495 281 -EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSH--------------------IVFEQDLFMLAQTTGG----- 334 (370)
Q Consensus 281 -~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~--------------------~~~~~d~~~~~~~~~~----- 334 (370)
++...+|++++++|+|||++++.++..++......... ......+.++....++
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 56789999999999999999998766544321100000 0000001111000011
Q ss_pred ------cccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 335 ------RERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 335 ------~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
..++.++|.++|+++||+++.+....+...+++++|
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 346899999999999998777666556777888876
No 40
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.68 E-value=5.1e-16 Score=143.42 Aligned_cols=162 Identities=18% Similarity=0.214 Sum_probs=120.5
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~ 266 (370)
...++..+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+. |..
T Consensus 79 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 155 (318)
T 2fk8_A 79 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-AEP 155 (318)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC-CCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC-CCC
Confidence 445666665 6678899999999999999999986 569999998 8888776542 4699999998652 343
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccc-h----hhhhhhhHHhhhcCCCcccCHH
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASS-H----IVFEQDLFMLAQTTGGRERSKK 340 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~-~----~~~~~d~~~~~~~~~~~~~t~~ 340 (370)
|+|++..++||+++++...+|++++++|+|||++++.++..+......... . .....+.......+++..++.+
T Consensus 156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 235 (318)
T 2fk8_A 156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTE 235 (318)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred cCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHH
Confidence 999999999999877788999999999999999999998775421000000 0 0001111111112466778999
Q ss_pred HHHHHHHhCCCCcceEEec
Q 017495 341 EYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 341 e~~~ll~~aGf~~v~~~~~ 359 (370)
++.++++++||+++++...
T Consensus 236 ~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 236 MMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHHhCCCEEEEEEec
Confidence 9999999999999987764
No 41
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.68 E-value=9e-17 Score=145.38 Aligned_cols=153 Identities=17% Similarity=0.242 Sum_probs=114.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC--CEEEeccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG--DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~--D~i~~~~v 274 (370)
+.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+ |+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56788999999999999999999999999999998 8888776542 579999999987 55543 99999999
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhh-HHhhhcCCCcccCHHHHHHHHHhCCCCc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDL-FMLAQTTGGRERSKKEYEALAKNSGFSG 353 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 353 (370)
+|++++. ..+|++++++|+|||++++.+.........+........+.. .......++..++..+|.++|+++||++
T Consensus 115 l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 192 (276)
T 3mgg_A 115 LEHLQSP--EEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEK 192 (276)
T ss_dssp GGGCSCH--HHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEE
T ss_pred hhhcCCH--HHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCe
Confidence 9999876 489999999999999999988643221000000011111111 1111112455667889999999999999
Q ss_pred ceEEec
Q 017495 354 LEIVCC 359 (370)
Q Consensus 354 v~~~~~ 359 (370)
+++...
T Consensus 193 v~~~~~ 198 (276)
T 3mgg_A 193 IRVEPR 198 (276)
T ss_dssp EEEEEE
T ss_pred EEEeeE
Confidence 987754
No 42
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.68 E-value=2e-16 Score=141.51 Aligned_cols=152 Identities=13% Similarity=0.092 Sum_probs=115.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~ 266 (370)
..++..+.+.++..+|||||||+|.++..+++.++. +++++|+ +.+++.+++. ++++++.+|+.+ +.+..
T Consensus 35 ~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (257)
T 3f4k_A 35 RKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE 113 (257)
T ss_dssp HHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred HHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence 345555544667789999999999999999999886 9999998 8888776542 469999999977 55543
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
|+|++..++||++ ...+|++++++|+|||++++.+......... ......+... .....+.++|.+
T Consensus 114 ~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~~~~~~~ 181 (257)
T 3f4k_A 114 ELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERP------AEIEDFWMDA---YPEISVIPTCID 181 (257)
T ss_dssp CEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCC------HHHHHHHHHH---CTTCCBHHHHHH
T ss_pred CEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCCh------HHHHHHHHHh---CCCCCCHHHHHH
Confidence 9999999999983 3589999999999999999999764332111 1111222111 233568999999
Q ss_pred HHHhCCCCcceEEecC
Q 017495 345 LAKNSGFSGLEIVCCA 360 (370)
Q Consensus 345 ll~~aGf~~v~~~~~~ 360 (370)
+|+++||+++.+...+
T Consensus 182 ~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 182 KMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHTTEEEEEEEECC
T ss_pred HHHHCCCeEEEEEECC
Confidence 9999999999987765
No 43
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.68 E-value=1.5e-16 Score=138.10 Aligned_cols=138 Identities=14% Similarity=0.095 Sum_probs=109.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCCC-CEEEecccccCCChh
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPRG-DAIFLKWMLHGWTDE 281 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~~-D~i~~~~vLh~~~d~ 281 (370)
+++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.. +.+.. |+|++..+|||++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 456789999999999999999986 568999998 8888877765578899999887 52233 999999999999988
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCC-CCcceEEec
Q 017495 282 HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSG-FSGLEIVCC 359 (370)
Q Consensus 282 ~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG-f~~v~~~~~ 359 (370)
+...+|++++++|+|||++++........... .. ......++.++|.++|+++| |+++++...
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--------~~-------~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRD--------KL-------ARYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEEC--------TT-------SCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCccccc--------cc-------chhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 88999999999999999999986544321000 00 01122468999999999999 999988765
No 44
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.68 E-value=7.3e-16 Score=136.44 Aligned_cols=143 Identities=17% Similarity=0.178 Sum_probs=110.1
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CCCeEEeccCCC-CCCCC--CEEEecccccC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PGVEHVGGDMFE-NVPRG--DAIFLKWMLHG 277 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~ 277 (370)
.++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.+++||
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 346789999999999999999997 568999998 8888877654 679999999988 65543 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~ 357 (370)
+++. ..+|++++++|+|||++++.+......... ..+..... .......++.+++.++++++||++++..
T Consensus 129 ~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 129 TEEP--LRALNEIKRVLKSDGYACIAILGPTAKPRE-------NSYPRLYG-KDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp SSCH--HHHHHHHHHHEEEEEEEEEEEECTTCGGGG-------GGGGGGGT-CCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ccCH--HHHHHHHHHHhCCCeEEEEEEcCCcchhhh-------hhhhhhcc-ccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 9765 588999999999999999998654332110 01111110 1113345789999999999999999877
Q ss_pred ec
Q 017495 358 CC 359 (370)
Q Consensus 358 ~~ 359 (370)
..
T Consensus 199 ~~ 200 (242)
T 3l8d_A 199 GV 200 (242)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 45
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.67 E-value=9.3e-17 Score=134.43 Aligned_cols=146 Identities=17% Similarity=0.168 Sum_probs=115.3
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-CCCCeEEeccCCCCCCCC--CEEEecc
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-FPGVEHVGGDMFENVPRG--DAIFLKW 273 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~D~~~~~p~~--D~i~~~~ 273 (370)
+++.++ ..+..+|||||||+|.++..+++.+. +++++|. +.+++.+++ .+++++..+| .+.+.. |+|++..
T Consensus 9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFAN 83 (170)
T ss_dssp THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEES
T ss_pred HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEcc
Confidence 344444 66778999999999999999999873 8999998 888877765 4689999999 444443 9999999
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCc
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSG 353 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 353 (370)
++|++++. ..+|++++++|+|||++++.++........+ .....++.++|.++|+ ||++
T Consensus 84 ~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~--Gf~~ 142 (170)
T 3i9f_A 84 SFHDMDDK--QHVISEVKRILKDDGRVIIIDWRKENTGIGP-----------------PLSIRMDEKDYMGWFS--NFVV 142 (170)
T ss_dssp CSTTCSCH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSS-----------------CGGGCCCHHHHHHHTT--TEEE
T ss_pred chhcccCH--HHHHHHHHHhcCCCCEEEEEEcCccccccCc-----------------hHhhhcCHHHHHHHHh--CcEE
Confidence 99999754 6899999999999999999998765432111 0112358999999999 9999
Q ss_pred ceEEecCCCeeEEEEe
Q 017495 354 LEIVCCAYNSWVMEFH 369 (370)
Q Consensus 354 v~~~~~~~~~~~~e~~ 369 (370)
+++.........+.+.
T Consensus 143 ~~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 143 EKRFNPTPYHFGLVLK 158 (170)
T ss_dssp EEEECSSTTEEEEEEE
T ss_pred EEccCCCCceEEEEEe
Confidence 9999988777666654
No 46
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.67 E-value=2e-16 Score=142.41 Aligned_cols=151 Identities=13% Similarity=0.091 Sum_probs=116.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG- 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~- 266 (370)
.++..+....+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+ +.+.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 34444443567889999999999999999998 8889999998 8888776542 569999999987 55543
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHH
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEAL 345 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 345 (370)
|+|++..++|+++ ...+|++++++|+|||++++.+......... ......+.- ......+.+++.++
T Consensus 115 fD~i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~~ 182 (267)
T 3kkz_A 115 LDLIWSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERP------AEINDFWMD---AYPEIDTIPNQVAK 182 (267)
T ss_dssp EEEEEESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCC------HHHHHHHHH---HCTTCEEHHHHHHH
T ss_pred EEEEEEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEeeecCCCCh------HHHHHHHHH---hCCCCCCHHHHHHH
Confidence 9999999999983 3688999999999999999999865432111 111122111 12345689999999
Q ss_pred HHhCCCCcceEEecC
Q 017495 346 AKNSGFSGLEIVCCA 360 (370)
Q Consensus 346 l~~aGf~~v~~~~~~ 360 (370)
++++||+++++...+
T Consensus 183 l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 183 IHKAGYLPVATFILP 197 (267)
T ss_dssp HHHTTEEEEEEEECC
T ss_pred HHHCCCEEEEEEECC
Confidence 999999999988765
No 47
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.67 E-value=2.9e-16 Score=139.34 Aligned_cols=149 Identities=17% Similarity=0.123 Sum_probs=107.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--CCCeEEeccCCCCCCC-C-CEEEecccccCCC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--PGVEHVGGDMFENVPR-G-DAIFLKWMLHGWT 279 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~D~~~~~p~-~-D~i~~~~vLh~~~ 279 (370)
..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .+++++.+|+.+..+. . |+|++.++|||++
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~ 117 (250)
T 2p7i_A 40 FFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 117 (250)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred hcCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhc
Confidence 34567999999999999999998766 6889998 8887776643 2799999999875343 3 9999999999998
Q ss_pred hhHHHHHHHHHH-HhCCCCcEEEEEeecCCCCCCC-----CccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCc
Q 017495 280 DEHCLKLLKNCW-EALPENGKVIIVESILPLVPEN-----QASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSG 353 (370)
Q Consensus 280 d~~~~~iL~~~~-~~L~pgG~lli~e~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 353 (370)
+. ..+|++++ ++|+|||+|++.++........ ............. .. ..+...++.++|.++|+++||++
T Consensus 118 ~~--~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~Gf~~ 193 (250)
T 2p7i_A 118 DP--VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAE-FA-HGHRCTYALDTLERDASRAGLQV 193 (250)
T ss_dssp SH--HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHH-HH-TTCCCCCCHHHHHHHHHHTTCEE
T ss_pred CH--HHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhccccc-cc-ccccccCCHHHHHHHHHHCCCeE
Confidence 76 68999999 9999999999988654321000 0000000000000 01 12345679999999999999999
Q ss_pred ceEEec
Q 017495 354 LEIVCC 359 (370)
Q Consensus 354 v~~~~~ 359 (370)
+++...
T Consensus 194 ~~~~~~ 199 (250)
T 2p7i_A 194 TYRSGI 199 (250)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 987654
No 48
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.67 E-value=2.7e-16 Score=144.02 Aligned_cols=173 Identities=13% Similarity=0.090 Sum_probs=119.0
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---------CCCeEEeccCCC-
Q 017495 193 LVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---------PGVEHVGGDMFE- 261 (370)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---------~rv~~~~~D~~~- 261 (370)
.....++..+. . ...+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+
T Consensus 70 ~~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (299)
T 3g2m_A 70 SEAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF 145 (299)
T ss_dssp HHHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC
T ss_pred HHHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC
Confidence 34455666554 3 3449999999999999999987 578999998 8888877642 579999999998
Q ss_pred CCCCC-CEEEe-cccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCcc--chhh--------hh-------
Q 017495 262 NVPRG-DAIFL-KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQAS--SHIV--------FE------- 322 (370)
Q Consensus 262 ~~p~~-D~i~~-~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~--~~~~--------~~------- 322 (370)
+.+.. |+|++ ..++|++++++...+|++++++|+|||+|++..+..+........ ..+. ..
T Consensus 146 ~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 225 (299)
T 3g2m_A 146 ALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAE 225 (299)
T ss_dssp CCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEE
T ss_pred CcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccc
Confidence 55444 98886 577888887788999999999999999999987755321000000 0000 00
Q ss_pred --hhhHHhh----------hcCCCcccCHHHHHHHHHhCCCCcceEEecCC------CeeEEEEe
Q 017495 323 --QDLFMLA----------QTTGGRERSKKEYEALAKNSGFSGLEIVCCAY------NSWVMEFH 369 (370)
Q Consensus 323 --~d~~~~~----------~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~------~~~~~e~~ 369 (370)
..+.... .......++.++|.++|+++||+++++.+... ...++|+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 226 EIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp EEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred cEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 0000000 00011245999999999999999999988752 23566654
No 49
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.67 E-value=1.1e-16 Score=141.97 Aligned_cols=138 Identities=19% Similarity=0.244 Sum_probs=111.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC--CEEEeccccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG--DAIFLKWMLH 276 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~--D~i~~~~vLh 276 (370)
+..+|||||||+|.++..+++.+ ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+ |+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999998876 568999998 8888776542 258899999876 44443 9999999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceE
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEI 356 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~ 356 (370)
|+++++...+|++++++|+|||+|++.++..+.. . .++. ..+...++.++|.++|+++||+++++
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~-------~~~~-----~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG---V-------ILDD-----VDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS---E-------EEET-----TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc---c-------eecc-----cCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 9998888899999999999999999999876541 0 0110 11233468999999999999999998
Q ss_pred EecC
Q 017495 357 VCCA 360 (370)
Q Consensus 357 ~~~~ 360 (370)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 7653
No 50
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.67 E-value=1.1e-15 Score=138.12 Aligned_cols=140 Identities=20% Similarity=0.223 Sum_probs=109.1
Q ss_pred CCCeEEEEcCcc---cHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCCC------------CC--
Q 017495 207 GLKVLVDVGGGI---GVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFEN------------VP-- 264 (370)
Q Consensus 207 ~~~~vLDvG~G~---G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~~------------~p-- 264 (370)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++ .++++++.+|+.++ ++
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 999888888899999999999 999887764 26899999999762 12
Q ss_pred CCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 265 RGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 265 ~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
..|+|++..+|||+++++...+|++++++|+|||+|++.+...+. .. ......+...... .....++.+++.+
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~---~~~~~~~~~~~~~-~~~~~~s~~ei~~ 229 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LP---AQQKLARITRENL-GEGWARTPEEIER 229 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CH---HHHHHHHHHHHHH-SCCCCBCHHHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hH---HHHHHHHHHHhcC-CCCccCCHHHHHH
Confidence 239999999999999877889999999999999999999987532 11 1111222222211 2456789999999
Q ss_pred HHHhCCCCcce
Q 017495 345 LAKNSGFSGLE 355 (370)
Q Consensus 345 ll~~aGf~~v~ 355 (370)
+| +||++++
T Consensus 230 ~l--~G~~l~~ 238 (274)
T 2qe6_A 230 QF--GDFELVE 238 (274)
T ss_dssp TT--TTCEECT
T ss_pred Hh--CCCeEcc
Confidence 99 5998775
No 51
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.66 E-value=2.3e-16 Score=136.21 Aligned_cols=141 Identities=7% Similarity=0.021 Sum_probs=107.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------------------CCCeEEec
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------------------PGVEHVGG 257 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------------------~rv~~~~~ 257 (370)
.++..+. ..+..+|||+|||+|..+..|++. +.+++++|+ +.+++.+++. .+++++++
T Consensus 13 ~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 13 QYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 3444444 567789999999999999999987 569999998 8888876532 47999999
Q ss_pred cCCC-CCC--CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC
Q 017495 258 DMFE-NVP--RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG 333 (370)
Q Consensus 258 D~~~-~~p--~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 333 (370)
|+.+ +.+ .. |+|++..++|++++++...++++++++|||||+++++....+.... ...
T Consensus 90 d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~------------------~~~ 151 (203)
T 1pjz_A 90 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALL------------------EGP 151 (203)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSS------------------SSC
T ss_pred ccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcccc------------------CCC
Confidence 9988 443 23 9999999999999888889999999999999995555443321100 001
Q ss_pred CcccCHHHHHHHHHhCCCCcceEEec
Q 017495 334 GRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 334 ~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
....+.+++.+++++ ||+++.+...
T Consensus 152 ~~~~~~~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 152 PFSVPQTWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp CCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred CCCCCHHHHHHHhcC-CcEEEEeccc
Confidence 112578999999998 9998777654
No 52
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.66 E-value=4.9e-16 Score=135.62 Aligned_cols=150 Identities=15% Similarity=0.101 Sum_probs=106.7
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----------CCCeEEeccCCC-CC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----------PGVEHVGGDMFE-NV 263 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----------~rv~~~~~D~~~-~~ 263 (370)
.+...+. ..+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++. .+++++.+|+.. +.
T Consensus 20 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 98 (219)
T 3jwg_A 20 TVVAVLK-SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK 98 (219)
T ss_dssp HHHHHHH-HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG
T ss_pred HHHHHHh-hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc
Confidence 3333333 34578999999999999999999999899999998 8888877642 179999999965 33
Q ss_pred CC-C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHH
Q 017495 264 PR-G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKE 341 (370)
Q Consensus 264 p~-~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e 341 (370)
+. . |+|++..++||+++++...+|++++++|+|||.+++........ ... ......... ......++.++
T Consensus 99 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~-~~~------~~~~~~~~~-~~~~~~~~~~~ 170 (219)
T 3jwg_A 99 RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNF-HYG------NLFEGNLRH-RDHRFEWTRKE 170 (219)
T ss_dssp GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGG-CCC------CT-----GG-GCCTTSBCHHH
T ss_pred ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhh-hhc------ccCcccccc-cCceeeecHHH
Confidence 32 3 99999999999998888899999999999999666544321110 000 000000000 11333468888
Q ss_pred HH----HHHHhCCCCcce
Q 017495 342 YE----ALAKNSGFSGLE 355 (370)
Q Consensus 342 ~~----~ll~~aGf~~v~ 355 (370)
+. ++++++||++..
T Consensus 171 l~~~~~~l~~~~Gf~v~~ 188 (219)
T 3jwg_A 171 FQTWAVKVAEKYGYSVRF 188 (219)
T ss_dssp HHHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHCCcEEEE
Confidence 88 889999997643
No 53
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.66 E-value=2.9e-16 Score=142.82 Aligned_cols=161 Identities=19% Similarity=0.165 Sum_probs=114.8
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC-
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG- 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~- 266 (370)
..++..+....+..+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++. .+++++.+|+.+ +.+..
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 90 (284)
T 3gu3_A 11 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKY 90 (284)
T ss_dssp HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCE
T ss_pred HHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCe
Confidence 344444433667899999999999999999999985 89999998 8888766542 379999999998 55544
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec-----CC---CCCCCCccchhhhhhhhHHhh-hcCCCccc
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI-----LP---LVPENQASSHIVFEQDLFMLA-QTTGGRER 337 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~-----~~---~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~ 337 (370)
|+|++..++|++++. ..+|++++++|+|||++++.++. .. ++...+.......+..+.... ...+....
T Consensus 91 D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (284)
T 3gu3_A 91 DIAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGN 168 (284)
T ss_dssp EEEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTT
T ss_pred eEEEECChhhcCCCH--HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhccccc
Confidence 999999999999876 58999999999999999999876 11 110000000011111111110 01134455
Q ss_pred CHHHHHHHHHhCCCCcceEEe
Q 017495 338 SKKEYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 338 t~~e~~~ll~~aGf~~v~~~~ 358 (370)
+..++.++|++|||+.+++..
T Consensus 169 ~~~~l~~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 169 IGMKIPIYLSELGVKNIECRV 189 (284)
T ss_dssp GGGTHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEE
Confidence 677899999999999987643
No 54
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.66 E-value=4.9e-16 Score=147.32 Aligned_cols=144 Identities=19% Similarity=0.261 Sum_probs=112.1
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC--------------CCCeEEeccCCC-------C
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF--------------PGVEHVGGDMFE-------N 262 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~--------------~rv~~~~~D~~~-------~ 262 (370)
.+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.++++ .+++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 356899999999999999999987 7889999998 8888877643 589999999987 4
Q ss_pred CCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHH
Q 017495 263 VPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKK 340 (370)
Q Consensus 263 ~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 340 (370)
++.+ |+|++..++|++++. ..+|++++++|||||+|++.+......... . .......... ..+..++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-----~-~~~~~~~~~~-~~~~~~~~~ 232 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRDGGELYFSDVYADRRLSE-----A-AQQDPILYGE-CLGGALYLE 232 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEESSCCCH-----H-HHHCHHHHHT-TCTTCCBHH
T ss_pred CCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCCCCEEEEEEeccccccCH-----h-HhhhHHHhhc-ccccCCCHH
Confidence 4443 999999999998865 689999999999999999998876532111 1 1111111211 234567889
Q ss_pred HHHHHHHhCCCCcceEEe
Q 017495 341 EYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 341 e~~~ll~~aGf~~v~~~~ 358 (370)
+|.++|+++||+.+++..
T Consensus 233 ~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 233 DFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHCCCceEEEEe
Confidence 999999999999887654
No 55
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.65 E-value=3.7e-16 Score=137.96 Aligned_cols=132 Identities=20% Similarity=0.163 Sum_probs=107.6
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC-C-CEEEecccccC
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR-G-DAIFLKWMLHG 277 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~-~-D~i~~~~vLh~ 277 (370)
..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++. .+++++.+|+.+..+. . |+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999999977 6778999998 8888776542 3599999999984343 3 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~ 357 (370)
+++++...+|++++++|+|||+|++.+......... .....+.++|.++|+++||+++.+.
T Consensus 145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------------PPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------------SSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------------CCccCCHHHHHHHHHHcCCeEEEEE
Confidence 998888899999999999999999988755432111 1112578999999999999999988
Q ss_pred ecC
Q 017495 358 CCA 360 (370)
Q Consensus 358 ~~~ 360 (370)
..+
T Consensus 206 ~~~ 208 (235)
T 3lcc_A 206 ENP 208 (235)
T ss_dssp ECT
T ss_pred ecC
Confidence 764
No 56
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.65 E-value=4.2e-16 Score=135.90 Aligned_cols=143 Identities=12% Similarity=0.053 Sum_probs=103.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----------CCCeEEeccCCC-CCCC-C-CEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----------PGVEHVGGDMFE-NVPR-G-DAI 269 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----------~rv~~~~~D~~~-~~p~-~-D~i 269 (370)
..+..+|||||||+|.++..+++.++..+++++|+ +.+++.+++. .+++++.+|+.. +.+. . |+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 34568999999999999999999988899999998 8888776542 279999999865 3332 3 999
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHH----HH
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYE----AL 345 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~----~l 345 (370)
++..++||+++++...+|++++++|+|||.+++........ ....+.............++.+++. ++
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNV--------KFANLPAGKLRHKDHRFEWTRSQFQNWANKI 178 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHH--------HTC-----------CCSCBCHHHHHHHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccch--------hhcccccccccccccccccCHHHHHHHHHHH
Confidence 99999999998888899999999999999777654421100 0000000000001123346888888 89
Q ss_pred HHhCCCCcce
Q 017495 346 AKNSGFSGLE 355 (370)
Q Consensus 346 l~~aGf~~v~ 355 (370)
++++||+++.
T Consensus 179 ~~~~Gf~v~~ 188 (217)
T 3jwh_A 179 TERFAYNVQF 188 (217)
T ss_dssp HHHSSEEEEE
T ss_pred HHHcCceEEE
Confidence 9999998643
No 57
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.64 E-value=2e-15 Score=142.49 Aligned_cols=217 Identities=10% Similarity=-0.006 Sum_probs=139.0
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh-hhh
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK-FLI 121 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~-~l~ 121 (370)
++|..| .+ |.|++|||+.+++ +++.+++||++|++.|+++.. ++ |++++.+. ++.
T Consensus 47 ~ll~~L-~~---------~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~~---------~~-~~lt~~~~~~l~ 102 (373)
T 2qm3_A 47 NVLSAV-LA---------SDDIWRIVDLSEE----PLPLVVAILESLNELGYVTFE---------DG-VKLTEKGEELVA 102 (373)
T ss_dssp HHHHHH-HH---------CSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECS---------SS-SEECHHHHHHHH
T ss_pred HHHHHh-cC---------CCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEEC---------CC-EEECHHHHHHHH
Confidence 789999 55 7999999999999 999999999999999999852 24 99998775 444
Q ss_pred cCCCCCC-CChhHHHH--hhcChhHHHhhhhhHHHHhcCCccchhccCCChhhhccCCchHHHHHHHHHHhchHHHHHHH
Q 017495 122 KNQDDDD-GSVAPLFL--LHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMNKI 198 (370)
Q Consensus 122 ~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l 198 (370)
....... ........ ......+...|..+.+.++....+. ..|+.....++ ...... . ..
T Consensus 103 ~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~--------l-~~ 165 (373)
T 2qm3_A 103 EYGIGKRYDFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPL------HEFDQAYVTPE--TTVARV--------I-LM 165 (373)
T ss_dssp HHTCCCCCC------------CGGGHHHHHHHHHHHTTCCCCC------GGGTCCCBCHH--HHHHHH--------H-HH
T ss_pred hcCccccccccchhhcCCCcchhhhHHHHHHHHHHHhcCCccc------hhcCCeecCHH--HHHHHH--------H-HH
Confidence 4221000 01100000 0000112223445556555432211 11111000111 111110 0 01
Q ss_pred HHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC----C-
Q 017495 199 LDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR----G- 266 (370)
Q Consensus 199 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~----~- 266 (370)
. ... ..+..+||||| |+|.++..++...|..+++++|+ +.+++.++++ .+++++.+|+.+..|. .
T Consensus 166 ~-~~~-~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~f 242 (373)
T 2qm3_A 166 H-TRG-DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKF 242 (373)
T ss_dssp H-HTT-CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCB
T ss_pred h-hcC-CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCc
Confidence 1 111 23468999999 99999999999888889999998 8998887653 3799999999884442 3
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|+|++...++.. ....+|+++.++|+|||++++.+..
T Consensus 243 D~Vi~~~p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 243 DTFITDPPETLE---AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp SEEEECCCSSHH---HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred cEEEECCCCchH---HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 999998776542 2479999999999999976665544
No 58
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.63 E-value=1.3e-15 Score=138.15 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=112.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCC-CCCCC-CEEEec
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFE-NVPRG-DAIFLK 272 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~-~~p~~-D~i~~~ 272 (370)
.++..+. ..+..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 124 (279)
T 3ccf_A 48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSN 124 (279)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEE
T ss_pred HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEc
Confidence 4455555 56778999999999999999998 7889999998 8888877643 679999999987 55444 999999
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhh------hcCCCcccCHHHHHHHH
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLA------QTTGGRERSKKEYEALA 346 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~~~t~~e~~~ll 346 (370)
+++|++++. ..+|++++++|+|||++++..+..... .............. .......++.++|.++|
T Consensus 125 ~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (279)
T 3ccf_A 125 AMLHWVKEP--EAAIASIHQALKSGGRFVAEFGGKGNI-----KYILEALYNALETLGIHNPQALNPWYFPSIGEYVNIL 197 (279)
T ss_dssp SCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECTTTT-----HHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHH
T ss_pred chhhhCcCH--HHHHHHHHHhcCCCcEEEEEecCCcch-----HHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHH
Confidence 999998865 589999999999999999977643221 00111111110000 00012345899999999
Q ss_pred HhCCCCcceEEec
Q 017495 347 KNSGFSGLEIVCC 359 (370)
Q Consensus 347 ~~aGf~~v~~~~~ 359 (370)
+++||+++++...
T Consensus 198 ~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 198 EKQGFDVTYAALF 210 (279)
T ss_dssp HHHTEEEEEEEEE
T ss_pred HHcCCEEEEEEEe
Confidence 9999999876654
No 59
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.63 E-value=1.3e-15 Score=134.85 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=109.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CCCeEEeccCCC-CCCCC--CEE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PGVEHVGGDMFE-NVPRG--DAI 269 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~D~~~-~~p~~--D~i 269 (370)
.+...++ ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 3444444 5567899999999999999999873 238999998 8888776643 468999999987 55443 999
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC--CCCCCcc--------chhhhhh-----hhHHhhhcCCC
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL--VPENQAS--------SHIVFEQ-----DLFMLAQTTGG 334 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~--~~~~~~~--------~~~~~~~-----d~~~~~~~~~~ 334 (370)
++..++||+++. ..+|++++++|+|||++++....... ....... ......+ ....+......
T Consensus 112 ~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (243)
T 3bkw_A 112 YSSLALHYVEDV--ARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVK 189 (243)
T ss_dssp EEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCE
T ss_pred EEeccccccchH--HHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEE
Confidence 999999998754 68999999999999999997753210 0000000 0000000 00000001122
Q ss_pred cccCHHHHHHHHHhCCCCcceEEec
Q 017495 335 RERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 335 ~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
..++.++|.++|+++||+++++...
T Consensus 190 ~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 190 HHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EeccHHHHHHHHHHcCCEeeeeccC
Confidence 3368999999999999999988764
No 60
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.63 E-value=2.8e-15 Score=135.43 Aligned_cols=161 Identities=10% Similarity=0.043 Sum_probs=112.8
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hh------HHHhCCCC-------CCCeEEecc-C
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PH------VLANAPSF-------PGVEHVGGD-M 259 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~------~~~~a~~~-------~rv~~~~~D-~ 259 (370)
..++..+. ..+..+|||||||+|.++..+++.+ |+.+++++|+ +. +++.+++. ++++++.+| +
T Consensus 33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 35556565 6778899999999999999999996 7789999998 54 56655432 479999998 4
Q ss_pred CC---CCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhh----
Q 017495 260 FE---NVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQ---- 330 (370)
Q Consensus 260 ~~---~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~---- 330 (370)
.. +++.+ |+|++..++||+++.. .+++.++++++|||++++.+...+..................+...
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSD 189 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCT
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccc
Confidence 43 33433 9999999999998774 4788888888889999999988765321110000000000000000
Q ss_pred -cCCCcccCHHHHHHHHHhCCCCcceEEec
Q 017495 331 -TTGGRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 331 -~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
......++.++|.++++++||+++++...
T Consensus 190 ~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 190 VANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp TCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 00123579999999999999999887765
No 61
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.63 E-value=2.9e-15 Score=131.71 Aligned_cols=150 Identities=13% Similarity=0.083 Sum_probs=109.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----------CCCeEEeccCCC-CCCCC--CEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----------PGVEHVGGDMFE-NVPRG--DAI 269 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----------~rv~~~~~D~~~-~~p~~--D~i 269 (370)
+++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++++..+|+.. +.+.. |+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 346789999999999999999987 679999998 8777766531 257999999987 55543 999
Q ss_pred EecccccCCChh-HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhc--------------CCC
Q 017495 270 FLKWMLHGWTDE-HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQT--------------TGG 334 (370)
Q Consensus 270 ~~~~vLh~~~d~-~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~--------------~~~ 334 (370)
++..++|++++. ....+|++++++|+|||++++.++....... .........+...... ...
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLK---LYRKRYLHDFPITKEEGSFLARDPETGETEFIA 182 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSH---HHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHH---HHHHHhhhhccchhhhcceEecccccCCcceee
Confidence 999999999765 4668999999999999999999886643210 0000000011110000 001
Q ss_pred cccCHHHHHHHHHhCCCCcceEEec
Q 017495 335 RERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 335 ~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
..++.++|.++|+++||+++++...
T Consensus 183 ~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 183 HHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp ECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred EeCCHHHHHHHHHHcCCEEEEEEec
Confidence 3568999999999999999987653
No 62
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.61 E-value=2.3e-15 Score=134.58 Aligned_cols=151 Identities=15% Similarity=0.125 Sum_probs=110.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-CCCCeEEeccCCC-CCCCC--CEEEe
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-FPGVEHVGGDMFE-NVPRG--DAIFL 271 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~D~~~-~~p~~--D~i~~ 271 (370)
.++..+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..+++++.+|+.+ + +.. |+|++
T Consensus 24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYA 101 (259)
T ss_dssp HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEE
T ss_pred HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEE
Confidence 4555555 56778999999999999999999999999999998 888887765 3679999999987 4 443 99999
Q ss_pred cccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhh--HHhhh----cCCCcccCHHHHHHH
Q 017495 272 KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDL--FMLAQ----TTGGRERSKKEYEAL 345 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~--~~~~~----~~~~~~~t~~e~~~l 345 (370)
..++|++++. ..+|++++++|+|||++++.++..... ............ +.... ......++.++|.++
T Consensus 102 ~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (259)
T 2p35_A 102 NAVFQWVPDH--LAVLSQLMDQLESGGVLAVQMPDNLQE---PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNA 176 (259)
T ss_dssp ESCGGGSTTH--HHHHHHHGGGEEEEEEEEEEEECCTTS---HHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHH
T ss_pred eCchhhCCCH--HHHHHHHHHhcCCCeEEEEEeCCCCCc---HHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHH
Confidence 9999998754 689999999999999999988643221 000000000000 00000 012345689999999
Q ss_pred HHhCCCCcc
Q 017495 346 AKNSGFSGL 354 (370)
Q Consensus 346 l~~aGf~~v 354 (370)
|+++||++.
T Consensus 177 l~~aGf~v~ 185 (259)
T 2p35_A 177 LSPKSSRVD 185 (259)
T ss_dssp HGGGEEEEE
T ss_pred HHhcCCceE
Confidence 999999743
No 63
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.61 E-value=1.6e-15 Score=135.34 Aligned_cols=159 Identities=14% Similarity=0.102 Sum_probs=109.8
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CCCeEEeccCCC-CCCCC--CEE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PGVEHVGGDMFE-NVPRG--DAI 269 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~D~~~-~~p~~--D~i 269 (370)
.+...++ ..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE
Confidence 4444444 446789999999999999999998654 8999998 8888776543 579999999987 55543 999
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC--CC--------CCCc-cchhhhhhh-----hHHhhhcCC
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL--VP--------ENQA-SSHIVFEQD-----LFMLAQTTG 333 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~--~~--------~~~~-~~~~~~~~d-----~~~~~~~~~ 333 (370)
++..++|++++. ..+|++++++|+|||+|++....... .. .... .......++ .........
T Consensus 113 ~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (253)
T 3g5l_A 113 LSSLALHYIASF--DDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQ 190 (253)
T ss_dssp EEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEE
T ss_pred EEchhhhhhhhH--HHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCc
Confidence 999999999654 68999999999999999997543210 00 0000 000000000 000000001
Q ss_pred CcccCHHHHHHHHHhCCCCcceEEec
Q 017495 334 GRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 334 ~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
...++.++|.++|+++||+++++...
T Consensus 191 ~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 191 KYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred cEecCHHHHHHHHHHcCCeeeeeecC
Confidence 11249999999999999999998754
No 64
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.61 E-value=1.9e-15 Score=132.07 Aligned_cols=153 Identities=16% Similarity=0.052 Sum_probs=109.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCC-----CCCC--CE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFEN-----VPRG--DA 268 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~-----~p~~--D~ 268 (370)
.++..+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.+. .+.. |+
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 4455454 445689999999999999999987 668999998 88888887777888888887652 2222 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhc-----CCCcccCHHHHH
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQT-----TGGRERSKKEYE 343 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~~~~t~~e~~ 343 (370)
|++.+++| +.+. ..+|++++++|+|||+|++.++........... ..+......... .....++.++|.
T Consensus 120 v~~~~~l~-~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (227)
T 3e8s_A 120 ICANFALL-HQDI--IELLSAMRTLLVPGGALVIQTLHPWSVADGDYQ---DGWREESFAGFAGDWQPMPWYFRTLASWL 193 (227)
T ss_dssp EEEESCCC-SSCC--HHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCS---CEEEEECCTTSSSCCCCEEEEECCHHHHH
T ss_pred EEECchhh-hhhH--HHHHHHHHHHhCCCeEEEEEecCccccCccccc---cccchhhhhccccCcccceEEEecHHHHH
Confidence 99999999 5544 689999999999999999988765433221100 000000000000 012345899999
Q ss_pred HHHHhCCCCcceEEe
Q 017495 344 ALAKNSGFSGLEIVC 358 (370)
Q Consensus 344 ~ll~~aGf~~v~~~~ 358 (370)
++|+++||+++++..
T Consensus 194 ~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 194 NALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHTTEEEEEEEC
T ss_pred HHHHHcCCeEEEEec
Confidence 999999999998775
No 65
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.61 E-value=3.1e-15 Score=135.97 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=111.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-C-CCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-N-VPR 265 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~-~p~ 265 (370)
..++..+. . ++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ + .+.
T Consensus 59 ~~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 59 DRVLAEMG-P-QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHHTC-S-SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHHhcC-C-CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 34555444 2 3679999999999999999987 679999998 8888877642 578999999987 3 344
Q ss_pred C--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhh-------cCCCcc
Q 017495 266 G--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQ-------TTGGRE 336 (370)
Q Consensus 266 ~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~~~ 336 (370)
+ |+|++..++||+++. ..+|++++++|+|||++++.++........ ......+....... ......
T Consensus 135 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGLLMH---NMVAGNFDYVQAGMPKKKKRTLSPDYP 209 (285)
T ss_dssp SCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHHHHH---HHHTTCHHHHHTTCCCC----CCCSCC
T ss_pred CCceEEEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchHHHH---HHHhcCHHHHhhhccccccccCCCCCC
Confidence 3 999999999999866 689999999999999999988754221000 00000000000000 012245
Q ss_pred cCHHHHHHHHHhCCCCcceEEecC
Q 017495 337 RSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 337 ~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
++.++|.++|+++||+++++..+.
T Consensus 210 ~~~~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 210 RDPTQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp BCHHHHHHHHHHTTCEEEEEEEES
T ss_pred CCHHHHHHHHHHCCCceeeeeeEE
Confidence 689999999999999999887764
No 66
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.61 E-value=6.4e-15 Score=125.50 Aligned_cols=132 Identities=19% Similarity=0.205 Sum_probs=107.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCC-CCCCC--CEEEe
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFE-NVPRG--DAIFL 271 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~-~~p~~--D~i~~ 271 (370)
.++..+ .++..+|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 444444 356789999999999999999986 568999998 8888776653 579999999987 55543 99999
Q ss_pred c-ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCC
Q 017495 272 K-WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSG 350 (370)
Q Consensus 272 ~-~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 350 (370)
. .++|++++++...+|++++++|+|||++++..... ..++.+++.++++++|
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~---------------------------~~~~~~~~~~~l~~~G 166 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG---------------------------RGWVFGDFLEVAERVG 166 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT---------------------------SSCCHHHHHHHHHHHT
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC---------------------------CCcCHHHHHHHHHHcC
Confidence 8 89999988888999999999999999999865321 1146889999999999
Q ss_pred CCcceEEec
Q 017495 351 FSGLEIVCC 359 (370)
Q Consensus 351 f~~v~~~~~ 359 (370)
|++++....
T Consensus 167 f~~~~~~~~ 175 (195)
T 3cgg_A 167 LELENAFES 175 (195)
T ss_dssp EEEEEEESS
T ss_pred CEEeeeecc
Confidence 999887554
No 67
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.60 E-value=4.2e-15 Score=133.17 Aligned_cols=147 Identities=16% Similarity=0.076 Sum_probs=104.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-----CCCCeEEeccCCC-CCCCC--CEEEecccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-----FPGVEHVGGDMFE-NVPRG--DAIFLKWML 275 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~D~~~-~~p~~--D~i~~~~vL 275 (370)
..+..+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+.+ |+|++.+++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 567789999999999999999986 578999998 888776643 2579999999987 55543 999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcC---CCcccCHHHHHHHHHhCCCC
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTT---GGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~t~~e~~~ll~~aGf~ 352 (370)
|++++. ..+|++++++|+|||++++. ...++ ..........+..+....... ....++.+++.++|+++||+
T Consensus 115 ~~~~~~--~~~l~~~~~~L~pgG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLKPGGALLEG-WDQAE--ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEEEEEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhcCCH--HHHHHHHHHHCCCCcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 999854 68999999999999999998 22211 011000011111111110000 11245789999999999999
Q ss_pred cceEEe
Q 017495 353 GLEIVC 358 (370)
Q Consensus 353 ~v~~~~ 358 (370)
++.+..
T Consensus 190 ~~~~~~ 195 (263)
T 2yqz_A 190 PRTREV 195 (263)
T ss_dssp CEEEEE
T ss_pred cceEEE
Confidence 876543
No 68
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.60 E-value=4.9e-15 Score=131.09 Aligned_cols=96 Identities=23% Similarity=0.278 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC-CEEEecc-ccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG-DAIFLKW-MLH 276 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~-D~i~~~~-vLh 276 (370)
++..+|||||||+|.++..+++. .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. ++|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLN 108 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence 35689999999999999999886 78999998 8888877642 479999999987 55544 9999986 999
Q ss_pred CC-ChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 277 GW-TDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 277 ~~-~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
|+ +.++...+|++++++|+|||++++.-
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 98 45677899999999999999999843
No 69
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.60 E-value=2.4e-15 Score=133.26 Aligned_cols=162 Identities=16% Similarity=0.105 Sum_probs=110.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC-CEEEecc-cccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG-DAIFLKW-MLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~-D~i~~~~-vLh~ 277 (370)
+..+|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. +|||
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5689999999999999999987 468999998 8888777643 279999999987 55544 9999998 9999
Q ss_pred CCh-hHHHHHHHHHHHhCCCCcEEEEEeecCCCC----CCCCc--------cchhh------hhhhhHHhhhc-------
Q 017495 278 WTD-EHCLKLLKNCWEALPENGKVIIVESILPLV----PENQA--------SSHIV------FEQDLFMLAQT------- 331 (370)
Q Consensus 278 ~~d-~~~~~iL~~~~~~L~pgG~lli~e~~~~~~----~~~~~--------~~~~~------~~~d~~~~~~~------- 331 (370)
+++ ++...+|++++++|+|||++++........ ..... ..+.. ....+.++...
T Consensus 115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRF 194 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCccccc
Confidence 843 577899999999999999999844321100 00000 00000 00000000000
Q ss_pred ---CCCcccCHHHHHHHHHhCCCCcceEEec--------CCCeeEEEEeC
Q 017495 332 ---TGGRERSKKEYEALAKNSGFSGLEIVCC--------AYNSWVMEFHK 370 (370)
Q Consensus 332 ---~~~~~~t~~e~~~ll~~aGf~~v~~~~~--------~~~~~~~e~~k 370 (370)
.....++.++|.++|+++||+++++... .....++.++|
T Consensus 195 ~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK 244 (246)
T 1y8c_A 195 DEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL 244 (246)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred EEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence 0123459999999999999999998754 12344666665
No 70
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.59 E-value=7.6e-15 Score=127.61 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=102.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCCCeEEeccCCC-CCCCC--CEEEec
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFE-NVPRG--DAIFLK 272 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~-~~p~~--D~i~~~ 272 (370)
..++..+....+..+|||||||+|.++..+. .+++++|.... +++++.+|+.+ +.+.+ |+|++.
T Consensus 56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 56 DRIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC 122 (215)
T ss_dssp HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred HHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence 3455555434567899999999999988772 58899997322 58899999987 55543 999999
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
+++|+ . +...+|++++++|+|||++++.+.... ..+.++|.++++++||+
T Consensus 123 ~~l~~-~--~~~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~l~~~Gf~ 172 (215)
T 2zfu_A 123 LSLMG-T--NIRDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRAVTKLGFK 172 (215)
T ss_dssp SCCCS-S--CHHHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHHHHHTTEE
T ss_pred hhccc-c--CHHHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHHHHHCCCE
Confidence 99984 4 347899999999999999999875321 12688999999999999
Q ss_pred cceEEecCCCeeEEEEeC
Q 017495 353 GLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 353 ~v~~~~~~~~~~~~e~~k 370 (370)
++..........++.++|
T Consensus 173 ~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 173 IVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp EEEEECCSTTCEEEEEEE
T ss_pred EEEEecCCCeEEEEEEEe
Confidence 988776666666676654
No 71
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.59 E-value=6e-15 Score=126.34 Aligned_cols=142 Identities=13% Similarity=0.053 Sum_probs=109.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC-C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG-D 267 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~-D 267 (370)
.+++.+. ..+..+|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 3444444 445679999999999999999986 669999998 8888776542 369999999987 44334 9
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHH
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 347 (370)
+|++..++|++++++...+|++++++|+|||++++.+.........+ ......++.+++.++|+
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~ 163 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRYYE 163 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCSCCBCTTHHHHHTT
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCCCccCHHHHHHHhc
Confidence 99999999999977788999999999999999999888765431110 01223457889999998
Q ss_pred hCCCCcceEEec
Q 017495 348 NSGFSGLEIVCC 359 (370)
Q Consensus 348 ~aGf~~v~~~~~ 359 (370)
+ |++++....
T Consensus 164 ~--f~~~~~~~~ 173 (199)
T 2xvm_A 164 G--WERVKYNED 173 (199)
T ss_dssp T--SEEEEEECC
T ss_pred C--CeEEEeccc
Confidence 7 988876543
No 72
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.59 E-value=7.6e-16 Score=140.62 Aligned_cols=145 Identities=13% Similarity=0.203 Sum_probs=104.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------------------------------------
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------------------------------------ 249 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------------------------------------ 249 (370)
+..+|||||||+|.++..+++.++..+++++|+ +.+++.+++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 578999999999999999999999999999998 8877766432
Q ss_pred ----------------------------CCCeEEeccCCCCC------CC-C-CEEEecccccCC----ChhHHHHHHHH
Q 017495 250 ----------------------------PGVEHVGGDMFENV------PR-G-DAIFLKWMLHGW----TDEHCLKLLKN 289 (370)
Q Consensus 250 ----------------------------~rv~~~~~D~~~~~------p~-~-D~i~~~~vLh~~----~d~~~~~iL~~ 289 (370)
.+|+|+.+|+.... +. . |+|++..+++++ +++....+|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 37999999998632 22 3 999999999665 66788899999
Q ss_pred HHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHh--CCCCcceEEec
Q 017495 290 CWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKN--SGFSGLEIVCC 359 (370)
Q Consensus 290 ~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~--aGf~~v~~~~~ 359 (370)
++++|+|||+|++............. ... .+... . ......++++.++|.+ +||+.++++..
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~---~~~--~~~~~--~-~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKT---LTE--TIYKN--Y-YRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTT---SCH--HHHHH--H-HHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhc---ccH--HHHhh--h-hcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999999985432111000000 000 00000 0 1112347899999999 99998887665
No 73
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.58 E-value=5.2e-15 Score=131.32 Aligned_cols=149 Identities=16% Similarity=0.106 Sum_probs=106.9
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC---CCCCeEEeccCCC-CCCC-------CCEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS---FPGVEHVGGDMFE-NVPR-------GDAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---~~rv~~~~~D~~~-~~p~-------~D~i~~~ 272 (370)
..+..+|||||||+|.++..+++.++ +++++|. +.+++.+++ ..+++++.+|+.+ +.+. .|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45678999999999999999999887 7899998 888877654 2479999999987 3221 4999999
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccc----hhhhhhhhHHhhhcCCCcccCHHHHHHHHHh
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASS----HIVFEQDLFMLAQTTGGRERSKKEYEALAKN 348 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~ 348 (370)
.++|++++++...+|++++++|+|||+|++.+...++........ .........+-. ......++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-- 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEH-GIRPGIFTAEDIELYF-- 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTT-TCCCCCCCHHHHHHHC--
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhcccc-CCCCCccCHHHHHHHh--
Confidence 999999988889999999999999999999998654310000000 000000000000 0011235899999999
Q ss_pred CCCCcceEEe
Q 017495 349 SGFSGLEIVC 358 (370)
Q Consensus 349 aGf~~v~~~~ 358 (370)
+||+++....
T Consensus 209 aGf~~~~~~~ 218 (245)
T 3ggd_A 209 PDFEILSQGE 218 (245)
T ss_dssp TTEEEEEEEC
T ss_pred CCCEEEeccc
Confidence 9999887544
No 74
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.58 E-value=1.3e-14 Score=126.69 Aligned_cols=136 Identities=17% Similarity=0.079 Sum_probs=102.6
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCCC--CEEEecccccCCChhHH
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEHC 283 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~~ 283 (370)
..+|||||||+|.++..+++. +++|. +.+++.+++. +++++.+|+.+ +.+.. |+|++.++||++++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~-- 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP-- 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--
Confidence 789999999999999988764 88998 8888877665 79999999887 55543 999999999998765
Q ss_pred HHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHH-hhhcCCCcccCHHHHHHHHHhCCCCcceEEec
Q 017495 284 LKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFM-LAQTTGGRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 284 ~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
..+|++++++|+|||++++.+...... .......... .........++.++|.++|+++||+++++...
T Consensus 119 ~~~l~~~~~~L~pgG~l~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 119 ERALKEAYRILKKGGYLIVGIVDRESF-------LGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSH-------HHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEeCCccH-------HHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 689999999999999999988644220 0000000000 00011234579999999999999999988765
No 75
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.57 E-value=3e-15 Score=129.38 Aligned_cols=151 Identities=13% Similarity=-0.029 Sum_probs=106.9
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC--CEEEecccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG--DAIFLKWML 275 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~--D~i~~~~vL 275 (370)
..+..+|||||||+|..+..++.. ++.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 456789999999999985544443 5679999998 8888776542 579999999987 65543 999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcce
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLE 355 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~ 355 (370)
||++.++...+|++++++|+|||++++.+...++.............+.............++.+++.++|+++||...+
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~ 179 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE 179 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence 99987788999999999999999999999876543211100000000000000000012356899999999999987665
Q ss_pred E
Q 017495 356 I 356 (370)
Q Consensus 356 ~ 356 (370)
.
T Consensus 180 ~ 180 (209)
T 2p8j_A 180 D 180 (209)
T ss_dssp E
T ss_pred e
Confidence 3
No 76
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.57 E-value=1.3e-14 Score=127.06 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=109.3
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC---CCCCC--CEE
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE---NVPRG--DAI 269 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~---~~p~~--D~i 269 (370)
..+++.++ .+..+|||||||+|.++..+++. + .+++++|. +.+++.+++.. .++..+|+.+ +.+.. |+|
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEE
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEE
Confidence 34555443 46789999999999999999987 4 89999998 88888776542 4788899875 33433 999
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhh---------hcCCCcccCHH
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLA---------QTTGGRERSKK 340 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~~~~t~~ 340 (370)
++.+++||+++. ..+|++++++|+|||++++..+..... .....+.... ...+...++.+
T Consensus 98 ~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (230)
T 3cc8_A 98 IFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHI---------SVLAPLLAGNWTYTEYGLLDKTHIRFFTFN 166 (230)
T ss_dssp EEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSH---------HHHHHHHTTCCCCBSSSTTBTTCCCCCCHH
T ss_pred EECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchH---------HHHHHHhcCCceeccCCCCCcceEEEecHH
Confidence 999999999866 589999999999999999987653220 0000000000 00122456899
Q ss_pred HHHHHHHhCCCCcceEEecC
Q 017495 341 EYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 341 e~~~ll~~aGf~~v~~~~~~ 360 (370)
+|.++|+++||+++++....
T Consensus 167 ~~~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 167 EMLRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHcCCeEEEEEecc
Confidence 99999999999999887753
No 77
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.56 E-value=1.9e-14 Score=128.49 Aligned_cols=97 Identities=13% Similarity=0.066 Sum_probs=85.4
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCCC--CEEEecccccCCChhH
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEH 282 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~ 282 (370)
...+|||||||+|.++..|++.+ .+++++|+ +.+++.+++..+++++.+|+.+ +++.+ |+|++..++|+++.
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~-- 114 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL-- 114 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH--
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH--
Confidence 45799999999999999999875 57999998 9999999988999999999988 77765 99999999988764
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 283 CLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 283 ~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.+++++++++|||||+|++.....+
T Consensus 115 -~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 115 -DRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp -HHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred -HHHHHHHHHHcCCCCEEEEEECCCC
Confidence 3789999999999999999887543
No 78
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.53 E-value=2.5e-14 Score=130.45 Aligned_cols=142 Identities=15% Similarity=0.046 Sum_probs=95.2
Q ss_pred CCCCeEEEEcCcccHHHH----HHHhhCCCCeE--EEeeh-hhHHHhCCCC-------CCCeE--EeccCCC-C------
Q 017495 206 DGLKVLVDVGGGIGVTLG----MITSRYPCIKG--ISFDL-PHVLANAPSF-------PGVEH--VGGDMFE-N------ 262 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~----~l~~~~p~~~~--~~~D~-p~~~~~a~~~-------~rv~~--~~~D~~~-~------ 262 (370)
.+..+|||||||+|.++. .++.++|+.++ +++|. +.+++.+++. .++++ ..++..+ +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 356799999999997654 44556788854 99998 8888765432 23444 4444432 1
Q ss_pred CCC-C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhc-CCCcccCH
Q 017495 263 VPR-G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQT-TGGRERSK 339 (370)
Q Consensus 263 ~p~-~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~t~ 339 (370)
++. . |+|++.++|||++|. .++|++++++|||||+|++.+..... . ....+......... .....++.
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~ 201 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSGSS----G---WDKLWKKYGSRFPQDDLCQYITS 201 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECTTS----H---HHHHHHHHGGGSCCCTTCCCCCH
T ss_pred cCCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCCCcEEEEEEecCCc----c---HHHHHHHHHHhccCCCcccCCCH
Confidence 233 3 999999999999976 58899999999999999998754211 0 11111111100000 01235689
Q ss_pred HHHHHHHHhCCCCcceE
Q 017495 340 KEYEALAKNSGFSGLEI 356 (370)
Q Consensus 340 ~e~~~ll~~aGf~~v~~ 356 (370)
++|.++|+++||+++..
T Consensus 202 ~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 202 DDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHCCCceEEE
Confidence 99999999999998763
No 79
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.53 E-value=3.4e-14 Score=126.62 Aligned_cols=133 Identities=8% Similarity=-0.073 Sum_probs=103.1
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-----------------------CCCCeEEeccCCC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-----------------------FPGVEHVGGDMFE 261 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----------------------~~rv~~~~~D~~~ 261 (370)
.+..+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..+++++++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 46789999999999999999986 569999998 888876632 1468999999998
Q ss_pred -CCC--CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCccc
Q 017495 262 -NVP--RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRER 337 (370)
Q Consensus 262 -~~p--~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 337 (370)
+.+ .. |+|++..+||++++++...++++++++|||||+++++....+.... .......
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~------------------~g~~~~~ 206 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH------------------AGPPFYV 206 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC------------------CCSSCCC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC------------------CCCCCCC
Confidence 443 33 9999999999999888889999999999999999876654322100 0001125
Q ss_pred CHHHHHHHHHhCCCCcceEEec
Q 017495 338 SKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 338 t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
+.+++.++|.. +|+++.+...
T Consensus 207 ~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 207 PSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CHHHHHHHHTT-TEEEEEEEEE
T ss_pred CHHHHHHHhhC-CeEEEEEecc
Confidence 78999999988 5998776543
No 80
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.51 E-value=4.6e-14 Score=129.16 Aligned_cols=163 Identities=18% Similarity=0.178 Sum_probs=109.5
Q ss_pred HHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCC--------CCC
Q 017495 182 VFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPS--------FPG 251 (370)
Q Consensus 182 ~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~--------~~r 251 (370)
.|.+....+.......+.. +. ..+..+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++ ..+
T Consensus 13 ~y~~~rp~y~~~~~~~l~~-~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~ 90 (299)
T 3g5t_A 13 RYSSSRPSYPSDFYKMIDE-YH-DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKN 90 (299)
T ss_dssp HHHHHSCCCCHHHHHHHHH-HC-CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTT
T ss_pred HHhhcCCCCCHHHHHHHHH-Hh-cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCc
Confidence 3444333333333434443 32 3467899999999999999999987 8899999998 888887754 368
Q ss_pred CeEEeccCCC-CCCC------C--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhh
Q 017495 252 VEHVGGDMFE-NVPR------G--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFE 322 (370)
Q Consensus 252 v~~~~~D~~~-~~p~------~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 322 (370)
++++.+|+.+ +.+. + |+|++..++|++ + ...+|++++++|+|||.|++.+...+.....+ .....
T Consensus 91 v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---~~~~~ 164 (299)
T 3g5t_A 91 VSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGYADPIFPDYP---EFDDL 164 (299)
T ss_dssp EEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEEEEEECTTCG---GGTTH
T ss_pred eEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEecCCccccCcH---HHHHH
Confidence 9999999988 5444 3 999999999998 3 46899999999999999999555432111111 11111
Q ss_pred hhhHHhhh-cCCCcc--cCHHHHHHHHHhCCCC
Q 017495 323 QDLFMLAQ-TTGGRE--RSKKEYEALAKNSGFS 352 (370)
Q Consensus 323 ~d~~~~~~-~~~~~~--~t~~e~~~ll~~aGf~ 352 (370)
+.-..... ..+... ...+.+.++++++||.
T Consensus 165 ~~~~~~~~~~~~~~w~~p~~~~~~~~l~~~gfp 197 (299)
T 3g5t_A 165 MIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHLD 197 (299)
T ss_dssp HHHHHHCTTTTGGGSCTTHHHHHHTTTTTCCCC
T ss_pred HHHhccCcccccchhhchhhHHHHHhhhccCCC
Confidence 11111100 001111 3456779999999994
No 81
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.50 E-value=2.9e-14 Score=127.83 Aligned_cols=141 Identities=11% Similarity=0.093 Sum_probs=103.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---C------------------------------
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---P------------------------------ 250 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~------------------------------ 250 (370)
..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. .
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 34568999999999999998888665 58999998 8877766431 1
Q ss_pred --CC-eEEeccCCCC--CCC----C-CEEEecccccCCCh--hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccch
Q 017495 251 --GV-EHVGGDMFEN--VPR----G-DAIFLKWMLHGWTD--EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSH 318 (370)
Q Consensus 251 --rv-~~~~~D~~~~--~p~----~-D~i~~~~vLh~~~d--~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~ 318 (370)
++ +++.+|+.+. .+. . |+|++..+||++++ ++...+|++++++|+|||+|++.+..... .
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-----~--- 204 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS-----Y--- 204 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-----E---
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc-----e---
Confidence 17 8999999872 233 3 99999999995433 26679999999999999999998854321 0
Q ss_pred hhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecC
Q 017495 319 IVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 319 ~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
....+. .......+.++|.++|+++||+++++....
T Consensus 205 -~~~~~~-----~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 205 -YMIGEQ-----KFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp -EEETTE-----EEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred -EEcCCc-----cccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 000000 001224578999999999999999887654
No 82
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.50 E-value=5.3e-15 Score=134.90 Aligned_cols=99 Identities=19% Similarity=0.136 Sum_probs=83.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------CCCeEEeccCCC-C---CCCC--C
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----------PGVEHVGGDMFE-N---VPRG--D 267 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~D~~~-~---~p~~--D 267 (370)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++.+..+|+.+ + ++.. |
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeE
Confidence 446789999999999999999997 449999998 8888877531 468899999877 4 4543 9
Q ss_pred EEEec-ccccCCCh-----hHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 268 AIFLK-WMLHGWTD-----EHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 268 ~i~~~-~vLh~~~d-----~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+|++. +++||+++ ++...+|++++++|+|||++++..+
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99998 89999998 6678999999999999999998765
No 83
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.50 E-value=2e-14 Score=131.15 Aligned_cols=154 Identities=17% Similarity=0.024 Sum_probs=108.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CC-CC-C-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NV-PR-G-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~-p~-~-D~i~~~ 272 (370)
..+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++.+|+.+ +. +. . |+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 356789999999999999998876 5568999998 8888766542 358999999987 55 33 3 999999
Q ss_pred ccccC--CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCC--------CCCCcc----------ch-hhhhhhhHHhhh-
Q 017495 273 WMLHG--WTDEHCLKLLKNCWEALPENGKVIIVESILPLV--------PENQAS----------SH-IVFEQDLFMLAQ- 330 (370)
Q Consensus 273 ~vLh~--~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~--------~~~~~~----------~~-~~~~~d~~~~~~- 330 (370)
.++|+ .+.++...+|++++++|+|||+|++..+....- ...... .. ....+.+.....
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 220 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSV 220 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhh
Confidence 99998 566778899999999999999999987643210 000000 00 000000000000
Q ss_pred -cCCCcccCHHHHHHHHHhCCCCcceEEec
Q 017495 331 -TTGGRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 331 -~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
......++.++|.++|+++||+++++...
T Consensus 221 ~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 221 NNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp SSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred cCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 00123468999999999999999988765
No 84
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.50 E-value=3.9e-14 Score=135.77 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=108.2
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC------CCC-C
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE------NVP-R 265 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~------~~p-~ 265 (370)
....++..+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+......+.. +++ .
T Consensus 95 ~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~ 170 (416)
T 4e2x_A 95 LARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEG 170 (416)
T ss_dssp HHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCC
Confidence 3456666665 667889999999999999999985 458999998 8888887764 33333322211 122 2
Q ss_pred C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 266 G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
. |+|++.++|||+++. ..+|++++++|||||++++..+..... .....+.... ..+...++.++|.+
T Consensus 171 ~fD~I~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~---------~~~~~~~~~~-~~~~~~~s~~~l~~ 238 (416)
T 4e2x_A 171 PANVIYAANTLCHIPYV--QSVLEGVDALLAPDGVFVFEDPYLGDI---------VAKTSFDQIF-DEHFFLFSATSVQG 238 (416)
T ss_dssp CEEEEEEESCGGGCTTH--HHHHHHHHHHEEEEEEEEEEEECHHHH---------HHHTCGGGCS-TTCCEECCHHHHHH
T ss_pred CEEEEEECChHHhcCCH--HHHHHHHHHHcCCCeEEEEEeCChHHh---------hhhcchhhhh-hhhhhcCCHHHHHH
Confidence 3 999999999999854 789999999999999999976543210 0000011110 12455679999999
Q ss_pred HHHhCCCCcceEEecC
Q 017495 345 LAKNSGFSGLEIVCCA 360 (370)
Q Consensus 345 ll~~aGf~~v~~~~~~ 360 (370)
+++++||+++++...+
T Consensus 239 ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 239 MAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHTTEEEEEEEEEC
T ss_pred HHHHcCCEEEEEEEcc
Confidence 9999999999988865
No 85
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.49 E-value=6.2e-13 Score=118.32 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=85.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC-C
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG-D 267 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~-D 267 (370)
..++.... ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |
T Consensus 31 ~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 107 (252)
T 1wzn_A 31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD 107 (252)
T ss_dssp HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred HHHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCcc
Confidence 34444443 446689999999999999999986 578999998 8888876542 369999999987 54544 9
Q ss_pred EEEec-ccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 268 AIFLK-WMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 268 ~i~~~-~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+|++. ..+++++.++...+|++++++|+|||.+++..+
T Consensus 108 ~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 99986 466777777888999999999999999987543
No 86
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.49 E-value=3.1e-13 Score=120.25 Aligned_cols=141 Identities=23% Similarity=0.319 Sum_probs=102.0
Q ss_pred CCCeEEEEcCcc--cHHHHHHH-hhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCC-----C---CC-C
Q 017495 207 GLKVLVDVGGGI--GVTLGMIT-SRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENV-----P---RG-D 267 (370)
Q Consensus 207 ~~~~vLDvG~G~--G~~~~~l~-~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~-----p---~~-D 267 (370)
+..+|||||||+ +..+..++ +..|+.+++++|. |.|++.+++. .+++++.+|+.++. | .. |
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 567999999997 44455554 4579999999998 9999988752 36899999998731 1 11 3
Q ss_pred -----EEEecccccCCChhH-HHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHH
Q 017495 268 -----AIFLKWMLHGWTDEH-CLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKE 341 (370)
Q Consensus 268 -----~i~~~~vLh~~~d~~-~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e 341 (370)
.|+++.+||++++++ ...+|++++++|+|||+|++.+.+.+..+. ......+...... .....||.++
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~-----~~~~~~~~~~~~g-~p~~~rs~~e 231 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQ-----EVGRVAREYAARN-MPMRLRTHAE 231 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHH-----HHHHHHHHHHHTT-CCCCCCCHHH
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHH-----HHHHHHHHHHhcC-CCCccCCHHH
Confidence 688999999999875 578999999999999999999987643210 1111122221111 1345689999
Q ss_pred HHHHHHhCCCCcce
Q 017495 342 YEALAKNSGFSGLE 355 (370)
Q Consensus 342 ~~~ll~~aGf~~v~ 355 (370)
+.++|. ||+.++
T Consensus 232 i~~~f~--Glelve 243 (277)
T 3giw_A 232 AEEFFE--GLELVE 243 (277)
T ss_dssp HHHTTT--TSEECT
T ss_pred HHHHhC--CCcccC
Confidence 999995 998664
No 87
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.48 E-value=7.2e-13 Score=110.88 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=96.8
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCCCC--CEEEecccccCCChh-
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVPRG--DAIFLKWMLHGWTDE- 281 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p~~--D~i~~~~vLh~~~d~- 281 (370)
.+..+|||||||+|.++..+++.. +++++|+ +.+++. ..+++++.+|+.++.+.. |+|+++..+|..++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 345699999999999999999876 9999998 888877 467999999998865533 999998888865443
Q ss_pred ------HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcce
Q 017495 282 ------HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLE 355 (370)
Q Consensus 282 ------~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~ 355 (370)
+...+++++.+.+ |||++++.+... ...+++.++++++||+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~~~l~~~gf~~~~ 145 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVLARLEERGYGTRI 145 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHHHHHHHTTCEEEE
T ss_pred cccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHHHHHHHCCCcEEE
Confidence 3457889999999 999999977422 1356899999999999988
Q ss_pred EEecC
Q 017495 356 IVCCA 360 (370)
Q Consensus 356 ~~~~~ 360 (370)
+....
T Consensus 146 ~~~~~ 150 (170)
T 3q87_B 146 LKVRK 150 (170)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 77754
No 88
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.48 E-value=1.7e-13 Score=124.46 Aligned_cols=139 Identities=17% Similarity=0.089 Sum_probs=106.2
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC-CEE
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG-DAI 269 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~-D~i 269 (370)
++..+. ..+..+|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|
T Consensus 112 ~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i 188 (286)
T 3m70_A 112 VVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFI 188 (286)
T ss_dssp HHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEE
T ss_pred HHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEE
Confidence 333343 336789999999999999999987 569999998 8888776542 279999999987 44444 999
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhC
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNS 349 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~a 349 (370)
++..++||++++....+|++++++|+|||.+++......+....+ ......++.+++.++++.
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~- 251 (286)
T 3m70_A 189 VSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENELKEYYKD- 251 (286)
T ss_dssp EECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHHHHHTTT-
T ss_pred EEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHHHHHhcC-
Confidence 999999999988888999999999999999988877654431110 011234567888888865
Q ss_pred CCCcceEE
Q 017495 350 GFSGLEIV 357 (370)
Q Consensus 350 Gf~~v~~~ 357 (370)
|+++...
T Consensus 252 -~~~~~~~ 258 (286)
T 3m70_A 252 -WEFLEYN 258 (286)
T ss_dssp -SEEEEEE
T ss_pred -CEEEEEE
Confidence 8877664
No 89
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.47 E-value=1.8e-13 Score=117.61 Aligned_cols=133 Identities=11% Similarity=0.045 Sum_probs=100.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC--CEEEecccccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG--DAIFLKWMLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~ 277 (370)
+. +|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++. +++
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~ 104 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCH 104 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCC
T ss_pred CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhc
Confidence 44 9999999999999999886 569999998 8888777643 378999999987 55543 999984 345
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~ 357 (370)
++.++...+|++++++|+|||++++.++...... ...... ......++.+++.++|+ ||+++.+.
T Consensus 105 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~---------~~~~~~----~~~~~~~~~~~l~~~l~--Gf~v~~~~ 169 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ---------YNTGGP----KDLDLLPKLETLQSELP--SLNWLIAN 169 (202)
T ss_dssp CCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG---------GTSCCS----SSGGGCCCHHHHHHHCS--SSCEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccc---------CCCCCC----CcceeecCHHHHHHHhc--CceEEEEE
Confidence 6767788999999999999999999887654310 000000 00123568999999999 99999876
Q ss_pred ec
Q 017495 358 CC 359 (370)
Q Consensus 358 ~~ 359 (370)
..
T Consensus 170 ~~ 171 (202)
T 2kw5_A 170 NL 171 (202)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 90
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.47 E-value=1.8e-14 Score=129.39 Aligned_cols=140 Identities=12% Similarity=0.037 Sum_probs=98.1
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------------------------------
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---------------------------------- 249 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---------------------------------- 249 (370)
..+..+|||||||+|.++..++... ..+++++|+ +.+++.+++.
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 3466899999999998776655432 126999998 8888765421
Q ss_pred -CCCe-EEeccCCCC--CC---C-C-CEEEecccccCCC--hhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccch
Q 017495 250 -PGVE-HVGGDMFEN--VP---R-G-DAIFLKWMLHGWT--DEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSH 318 (370)
Q Consensus 250 -~rv~-~~~~D~~~~--~p---~-~-D~i~~~~vLh~~~--d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~ 318 (370)
.++. ++.+|+.+. .+ . . |+|++..+||+.. .++...+|++++++|||||+|++.+......
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-------- 203 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-------- 203 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE--------
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc--------
Confidence 0132 889999873 21 2 2 9999999999852 2466789999999999999999987643220
Q ss_pred hhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEec
Q 017495 319 IVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 319 ~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
+. .... .......+.++|.++|+++||+++++...
T Consensus 204 ~~-~g~~-----~~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 204 YM-VGKR-----EFSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp EE-ETTE-----EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ce-eCCe-----EeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 00 0000 00112358999999999999999987664
No 91
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.46 E-value=1.9e-14 Score=125.13 Aligned_cols=100 Identities=13% Similarity=0.175 Sum_probs=83.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCCCCCC-C-CEEEecccccC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFENVPR-G-DAIFLKWMLHG 277 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~~~p~-~-D~i~~~~vLh~ 277 (370)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+..+. . |+|++.+++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 5567899999999999999999875 48899998 877776654 25799999999883343 3 99999999999
Q ss_pred CCh-hHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 278 WTD-EHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 278 ~~d-~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+++ +....+|++++++|+|||++++..+.
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 986 45568999999999999999997763
No 92
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.46 E-value=2e-13 Score=118.13 Aligned_cols=142 Identities=16% Similarity=0.061 Sum_probs=101.1
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCC-eEEEeeh-hhHHHhCCCC-CCCeEEeccCCC-CCCCC--CEEE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCI-KGISFDL-PHVLANAPSF-PGVEHVGGDMFE-NVPRG--DAIF 270 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~-~~p~~--D~i~ 270 (370)
.++..+. .+..+|||||||+|.++..+ +. +++++|. +.+++.+++. .+++++.+|+.+ +.+.+ |+|+
T Consensus 28 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 28 RALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVL 100 (211)
T ss_dssp HHHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEE
T ss_pred HHHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEE
Confidence 3444443 26789999999999998877 45 8999998 8888777654 579999999987 65553 9999
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhh--hcCCCcccCHHHHHHHHHh
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLA--QTTGGRERSKKEYEALAKN 348 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~t~~e~~~ll~~ 348 (370)
+.+++||+++. ..+|++++++|+|||++++.++..... +........... ...+...++.++++++|+
T Consensus 101 ~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~- 170 (211)
T 2gs9_A 101 LFTTLEFVEDV--ERVLLEARRVLRPGGALVVGVLEALSP-------WAALYRRLGEKGVLPWAQARFLAREDLKALLG- 170 (211)
T ss_dssp EESCTTTCSCH--HHHHHHHHHHEEEEEEEEEEEECTTSH-------HHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC-
T ss_pred EcChhhhcCCH--HHHHHHHHHHcCCCCEEEEEecCCcCc-------HHHHHHHHhhccCccccccccCCHHHHHHHhc-
Confidence 99999999854 689999999999999999988754321 000000000000 001244579999999999
Q ss_pred CCCCcceEEe
Q 017495 349 SGFSGLEIVC 358 (370)
Q Consensus 349 aGf~~v~~~~ 358 (370)
| +++...
T Consensus 171 -G--~~~~~~ 177 (211)
T 2gs9_A 171 -P--PEAEGE 177 (211)
T ss_dssp -S--CSEEEE
T ss_pred -C--cceeEE
Confidence 8 444433
No 93
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.45 E-value=3.8e-14 Score=129.07 Aligned_cols=138 Identities=13% Similarity=0.125 Sum_probs=96.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----C-------------------------------
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----P------------------------------- 250 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~------------------------------- 250 (370)
+..+|||||||+|... .++...+..+++++|+ +.+++.+++. .
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 5689999999999944 3444445669999998 8888755431 0
Q ss_pred -CCeEEeccCCC--C-----CCCC--CEEEecccccCCChh--HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccch
Q 017495 251 -GVEHVGGDMFE--N-----VPRG--DAIFLKWMLHGWTDE--HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSH 318 (370)
Q Consensus 251 -rv~~~~~D~~~--~-----~p~~--D~i~~~~vLh~~~d~--~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~ 318 (370)
.++++.+|+.+ + .+.+ |+|++..+||+++++ +...+|++++++|||||+|++.+..... .
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~--------~ 221 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES--------W 221 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC--------E
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc--------e
Confidence 03456668876 2 2232 999999999985543 6689999999999999999998654321 0
Q ss_pred hhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEec
Q 017495 319 IVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 319 ~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
.. ..+. ......++.++|.++|+++||+++++...
T Consensus 222 ~~-~~~~-----~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 222 YL-AGEA-----RLTVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp EE-ETTE-----EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred EE-cCCe-----eeeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 00 0000 00123468999999999999999887654
No 94
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.45 E-value=9.3e-13 Score=113.41 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=98.6
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC---CC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP---RG 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p---~~ 266 (370)
.++..+. ..+..+|||||||+|.++..+++.+|..+++++|. +.+++.+++. ++++++.+|+.+..+ ..
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence 4455555 66788999999999999999999999999999998 8888877642 579999999977433 23
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
|+|++...++ +...+|+++.++|+|||++++...... +.+++.+++
T Consensus 110 D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------------------------~~~~~~~~l 155 (204)
T 3e05_A 110 DRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTLD-----------------------------TLTKAVEFL 155 (204)
T ss_dssp SEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBHH-----------------------------HHHHHHHHH
T ss_pred CEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEecccc-----------------------------cHHHHHHHH
Confidence 9999988876 345899999999999999999654210 256788899
Q ss_pred HhCCCCcceE
Q 017495 347 KNSGFSGLEI 356 (370)
Q Consensus 347 ~~aGf~~v~~ 356 (370)
+++|| .+++
T Consensus 156 ~~~g~-~~~~ 164 (204)
T 3e05_A 156 EDHGY-MVEV 164 (204)
T ss_dssp HHTTC-EEEE
T ss_pred HHCCC-ceeE
Confidence 99998 4443
No 95
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.44 E-value=1.1e-12 Score=118.58 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=108.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC-C
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR-G 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~-~ 266 (370)
+..++..+. .+..+|||||||+|..+..+++.+|+.+++++|. +.+++.++++ .+++++.+|+.+..+. .
T Consensus 99 ~~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 176 (276)
T 2b3t_A 99 VEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQ 176 (276)
T ss_dssp HHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCC
T ss_pred HHHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCC
Confidence 334444443 3567999999999999999999999999999998 8888876643 4799999999885533 3
Q ss_pred -CEEEec-------------ccccCCCh----------hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhh
Q 017495 267 -DAIFLK-------------WMLHGWTD----------EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFE 322 (370)
Q Consensus 267 -D~i~~~-------------~vLh~~~d----------~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 322 (370)
|+|+++ .++++.+. +....+++.+.+.|+|||++++...
T Consensus 177 fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~----------------- 239 (276)
T 2b3t_A 177 FAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG----------------- 239 (276)
T ss_dssp EEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-----------------
T ss_pred ccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------------
Confidence 999997 35554432 3457899999999999999998421
Q ss_pred hhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecC-CCeeEEEEeC
Q 017495 323 QDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCA-YNSWVMEFHK 370 (370)
Q Consensus 323 ~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~~~~e~~k 370 (370)
..+.+++.++++++||+.+++.... +...++.++|
T Consensus 240 -------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 -------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp -------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred -------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 0136789999999999998887653 4445665543
No 96
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.44 E-value=1.3e-12 Score=114.87 Aligned_cols=141 Identities=14% Similarity=0.082 Sum_probs=100.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhC----CCCCCCeEEeccCCCC-----CCCC-CEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANA----PSFPGVEHVGGDMFEN-----VPRG-DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a----~~~~rv~~~~~D~~~~-----~p~~-D~i~~~~ 273 (370)
+.+..+|||||||+|.++..+++.++..+++++|. +.+++.+ +...++.++.+|+..+ .+.. |+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 55778999999999999999999988789999998 7777543 3346899999998761 2233 9988
Q ss_pred cccCCChh-HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 274 MLHGWTDE-HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 274 vLh~~~d~-~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
|+++++ ....+|+++.+.|+|||++++. ........... .. ....+++. +|+++||+
T Consensus 149 --~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~---------~~---------~~~~~~l~-~l~~~Gf~ 206 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKD---------PK---------EIFKEQKE-ILEAGGFK 206 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSC---------HH---------HHHHHHHH-HHHHHTEE
T ss_pred --EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCC---------HH---------HhhHHHHH-HHHHCCCE
Confidence 454443 3467799999999999999997 22111100000 00 01236787 89999999
Q ss_pred cceEEecCCC---eeEEEEeC
Q 017495 353 GLEIVCCAYN---SWVMEFHK 370 (370)
Q Consensus 353 ~v~~~~~~~~---~~~~e~~k 370 (370)
.+++.+.... +.++.+.|
T Consensus 207 ~~~~~~~~~~~~~~~~v~~~k 227 (230)
T 1fbn_A 207 IVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp EEEEEECTTTSTTEEEEEEEE
T ss_pred EEEEEccCCCccceEEEEEEe
Confidence 9998877543 66666553
No 97
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.44 E-value=1.9e-13 Score=118.94 Aligned_cols=142 Identities=11% Similarity=0.065 Sum_probs=95.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHh----CCC------CCCCeEEeccCCC-CCCCC-CEEEe
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLAN----APS------FPGVEHVGGDMFE-NVPRG-DAIFL 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~----a~~------~~rv~~~~~D~~~-~~p~~-D~i~~ 271 (370)
..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ .++++++.+|+.+ +++.+ |.|++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 45678999999999999999999999999999998 775553 222 2479999999988 55533 66552
Q ss_pred c---ccc--cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 272 K---WML--HGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 272 ~---~vL--h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
. ..+ ||++++ ..+|++++++|||||++++......-.... ....+ . .........+++.+++
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~------~~~~~---~--~~~~~~~~~~~l~~~l 171 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRPGASFLVALNLHAWRPSV------PEVGE---H--PEPTPDSADEWLAPRY 171 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEEEEEEEEGGGBTTBC------GGGTT---C--CCCCHHHHHHHHHHHH
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcCCCcEEEEEeccccccccc------ccccc---C--CccchHHHHHHHHHHH
Confidence 2 222 233333 688999999999999999944322111000 00000 0 0011122345688899
Q ss_pred HhCCCCcceEEec
Q 017495 347 KNSGFSGLEIVCC 359 (370)
Q Consensus 347 ~~aGf~~v~~~~~ 359 (370)
+++||++.++...
T Consensus 172 ~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 172 AEAGWKLADCRYL 184 (218)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHcCCCceeeecc
Confidence 9999999887665
No 98
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.43 E-value=4.6e-13 Score=125.07 Aligned_cols=113 Identities=16% Similarity=0.270 Sum_probs=91.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC---------------CCCCeEEecc
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS---------------FPGVEHVGGD 258 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---------------~~rv~~~~~D 258 (370)
+..++..+. ..+..+|||||||+|..+..++..++..+++++|+ +.+++.+++ ..+|+|+.+|
T Consensus 162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 456666666 77889999999999999999998887777999998 766665542 2579999999
Q ss_pred CCC-CCC----CCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCC
Q 017495 259 MFE-NVP----RGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVP 311 (370)
Q Consensus 259 ~~~-~~p----~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~ 311 (370)
+.+ +++ ..|+|+++.+++ + ++....|+++++.|||||+|++.|.+.+++.
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 998 543 359999987764 2 4567888999999999999999999988754
No 99
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.42 E-value=1.2e-12 Score=111.23 Aligned_cols=141 Identities=19% Similarity=0.218 Sum_probs=109.0
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------C--CCeEEeccCCCCCCC-
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------P--GVEHVGGDMFENVPR- 265 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~--rv~~~~~D~~~~~p~- 265 (370)
..++..+. ..+..+|||+|||+|.++..+++. ..+++++|. +.+++.+++. . +++++.+|+.+..+.
T Consensus 42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 34555555 567789999999999999999987 779999998 8887766542 2 499999999885544
Q ss_pred C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 266 G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
. |+|++...+|+ ..+....++++++++|+|||++++....... ..++.+
T Consensus 119 ~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~-----------------------------~~~~~~ 168 (194)
T 1dus_A 119 KYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQG-----------------------------AKSLAK 168 (194)
T ss_dssp CEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTHH-----------------------------HHHHHH
T ss_pred CceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCCC-----------------------------hHHHHH
Confidence 3 99999888875 3456779999999999999999997763211 235677
Q ss_pred HHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 345 LAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 345 ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
.+++. |..+++.....+..++.+.|
T Consensus 169 ~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 169 YMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHH-hcceEEEecCCcEEEEEEee
Confidence 77777 77778877777888887776
No 100
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.41 E-value=1.8e-13 Score=118.39 Aligned_cols=138 Identities=17% Similarity=0.055 Sum_probs=89.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCC----
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVP---- 264 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p---- 264 (370)
...++..+....+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|+.++.+
T Consensus 18 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 97 (215)
T 4dzr_A 18 VEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAE 97 (215)
T ss_dssp HHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhh
Confidence 344555554236778999999999999999999999999999998 8888888764 168889999877433
Q ss_pred --CC-CEEEecccc------cCCChhHH------------------HHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccc
Q 017495 265 --RG-DAIFLKWML------HGWTDEHC------------------LKLLKNCWEALPENGKVIIVESILPLVPENQASS 317 (370)
Q Consensus 265 --~~-D~i~~~~vL------h~~~d~~~------------------~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~ 317 (370)
.. |+|++...+ ++++++.. ..++++++++|+|||++++++...
T Consensus 98 ~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------- 167 (215)
T 4dzr_A 98 RGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH---------- 167 (215)
T ss_dssp TTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT----------
T ss_pred ccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC----------
Confidence 23 999995333 33333222 688999999999999966654321
Q ss_pred hhhhhhhhHHhhhcCCCcccCHHHHHHHHH--hCCCCcceEEecCC
Q 017495 318 HIVFEQDLFMLAQTTGGRERSKKEYEALAK--NSGFSGLEIVCCAY 361 (370)
Q Consensus 318 ~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~--~aGf~~v~~~~~~~ 361 (370)
...+++.++++ ++||..+++.+...
T Consensus 168 -------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~ 194 (215)
T 4dzr_A 168 -------------------NQADEVARLFAPWRERGFRVRKVKDLR 194 (215)
T ss_dssp -------------------SCHHHHHHHTGGGGGGTEECCEEECTT
T ss_pred -------------------ccHHHHHHHHHHhhcCCceEEEEEecC
Confidence 12456788888 89999888877643
No 101
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.41 E-value=3.9e-13 Score=115.88 Aligned_cols=128 Identities=15% Similarity=0.054 Sum_probs=102.2
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCCC-CEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPRG-DAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~~-D~i~~~~vLh~ 277 (370)
.+..+|||||||+|.++..+++ .+..+++++|. +.+++.+++. .++++..+|+.+..+.. |+|++...+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 4568999999999999999876 57779999998 8888777642 24999999998754444 99999887764
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~ 357 (370)
...++++++++|+|||++++.+.... +.+++.++++++||+.+++.
T Consensus 138 -----~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp -----HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEecCcc-----------------------------cHHHHHHHHHHcCCceEEee
Confidence 46889999999999999999665321 25678999999999999988
Q ss_pred ecCCCeeEEEE
Q 017495 358 CCAYNSWVMEF 368 (370)
Q Consensus 358 ~~~~~~~~~e~ 368 (370)
....-.+++.-
T Consensus 184 ~~~~w~~~~~~ 194 (205)
T 3grz_A 184 RAGRWIGLAIS 194 (205)
T ss_dssp EETTEEEEEEE
T ss_pred ccCCEEEEEEe
Confidence 77655555543
No 102
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.41 E-value=5e-14 Score=124.45 Aligned_cols=133 Identities=11% Similarity=0.034 Sum_probs=91.6
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC---CCCCC--CEEEe---
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE---NVPRG--DAIFL--- 271 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~---~~p~~--D~i~~--- 271 (370)
.+..+|||||||+|..+..+++..|. +++++|+ |.+++.+++. .+++++.+|... +.+.. |.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 46789999999999999999887664 7899998 9999887642 457888888654 34443 77754
Q ss_pred --cccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhC
Q 017495 272 --KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNS 349 (370)
Q Consensus 272 --~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~a 349 (370)
...++|++ +...++++++++|||||+|++.+....... ....++ .......+.+...|.++
T Consensus 138 ~~~~~~~~~~--~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~-------~~~~~~--------~~~~~~~~~~~~~L~ea 200 (236)
T 3orh_A 138 PLSEETWHTH--QFNFIKNHAFRLLKPGGVLTYCNLTSWGEL-------MKSKYS--------DITIMFEETQVPALLEA 200 (236)
T ss_dssp CCBGGGTTTH--HHHHHHHTHHHHEEEEEEEEECCHHHHHHH-------TTTTCS--------CHHHHHHHHTHHHHHHH
T ss_pred ecccchhhhc--chhhhhhhhhheeCCCCEEEEEecCCchhh-------hhhhhh--------hhhhhhHHHHHHHHHHc
Confidence 55566655 447899999999999999998654321100 000000 00111245677888999
Q ss_pred CCCcceE
Q 017495 350 GFSGLEI 356 (370)
Q Consensus 350 Gf~~v~~ 356 (370)
||+++.+
T Consensus 201 GF~~~~i 207 (236)
T 3orh_A 201 GFRRENI 207 (236)
T ss_dssp TCCGGGE
T ss_pred CCeEEEE
Confidence 9998765
No 103
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.39 E-value=7.5e-13 Score=115.92 Aligned_cols=145 Identities=16% Similarity=0.066 Sum_probs=91.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh--hhHHHhC---CCC------CCCeEEeccCCCCCCC--CCEEEec
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL--PHVLANA---PSF------PGVEHVGGDMFENVPR--GDAIFLK 272 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--p~~~~~a---~~~------~rv~~~~~D~~~~~p~--~D~i~~~ 272 (370)
.+..+|||||||+|.++..++++.|+.+++++|+ +.+++.+ ++. .++.++.+|+.+. |. .|+|.+.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhccCeEEEE
Confidence 4567999999999999999998889999999997 3444433 432 4689999998763 32 2655555
Q ss_pred ccccCCChhH------HHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 273 WMLHGWTDEH------CLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 273 ~vLh~~~d~~------~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
.+.+.|+... ...+|++++++|||||++++........ .... ....... . ........+++.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~~~----~~~~~~~---~-~~~~~~~~~el~~~l 172 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSY-EEAE----IKKRGLP---L-LSKAYFLSEQYKAEL 172 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-----------------------CCHHHHHSHHHHHHH
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccc-hhch----hhhcCCC---C-CChhhcchHHHHHHH
Confidence 4444343211 1368999999999999999954333221 0000 0000000 0 000111223599999
Q ss_pred HhCCCCcceEEecC
Q 017495 347 KNSGFSGLEIVCCA 360 (370)
Q Consensus 347 ~~aGf~~v~~~~~~ 360 (370)
+++||+++.+...+
T Consensus 173 ~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 173 SNSGFRIDDVKELD 186 (225)
T ss_dssp HHHTCEEEEEEEEC
T ss_pred HHcCCCeeeeeecC
Confidence 99999988876653
No 104
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.39 E-value=9.6e-13 Score=110.47 Aligned_cols=101 Identities=18% Similarity=0.236 Sum_probs=81.6
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCC---C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVP---R 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p---~ 265 (370)
.++..+. ..+..+|||||||+|.++..+++.+|..+++++|. +.+++.+++. +++ ++.+|..+.++ .
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 3444454 66778999999999999999999999999999998 8788776532 267 88888876433 2
Q ss_pred -CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 266 -GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 266 -~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.|+|++...+|+ ..+++++.+.|+|||++++.+.
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence 399999999987 4789999999999999998664
No 105
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.38 E-value=3e-12 Score=128.18 Aligned_cols=108 Identities=18% Similarity=0.175 Sum_probs=88.8
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCC------------CCCCeEEeccCCC-C
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPS------------FPGVEHVGGDMFE-N 262 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~------------~~rv~~~~~D~~~-~ 262 (370)
++..+. ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ ..+++++.+|+.+ +
T Consensus 713 LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp 791 (950)
T 3htx_A 713 ALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD 791 (950)
T ss_dssp HHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC
T ss_pred HHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC
Confidence 334343 3467899999999999999999988 5679999998 888887754 2469999999988 5
Q ss_pred CCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 263 VPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 263 ~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.+.+ |+|++..++||++++....++++++++|+|| .++|..+..
T Consensus 792 ~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 792 SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp TTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred cccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 5433 9999999999999988889999999999999 777766543
No 106
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.35 E-value=2.8e-12 Score=117.25 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=76.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----C--------CCeEEeccCCC---------CCC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----P--------GVEHVGGDMFE---------NVP 264 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~--------rv~~~~~D~~~---------~~p 264 (370)
+..+|||||||+|..+..++.. ...+++++|+ +.+++.|+++ . ++++...|+.. +.+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4679999999999877666553 3468999998 8999888753 1 15677888732 234
Q ss_pred CC--CEEEecccccCC-ChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 265 RG--DAIFLKWMLHGW-TDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 265 ~~--D~i~~~~vLh~~-~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
.+ |+|++..++|+. ++++...+|++++++|||||++++..+.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 33 999999999974 4445679999999999999999987763
No 107
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.35 E-value=2.3e-12 Score=114.77 Aligned_cols=108 Identities=10% Similarity=0.085 Sum_probs=82.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CC------CCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NV------PRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~------p~~ 266 (370)
...++..+. ..+..+|||||||+|.++..++++ +.+++++|+ +.+++.++++..-.++..++.+ +. +..
T Consensus 34 ~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 34 RENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence 345555555 677889999999999999999986 568999998 8888877653111123333332 11 223
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|+|++..++||++.++...+|++++++| |||+|++....
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 9999999999999888899999999999 99999987543
No 108
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.35 E-value=2.2e-12 Score=118.67 Aligned_cols=100 Identities=18% Similarity=0.110 Sum_probs=81.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------------CCCeEEeccCCC-C----CC--
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------------PGVEHVGGDMFE-N----VP-- 264 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------------~rv~~~~~D~~~-~----~p-- 264 (370)
.+..+|||||||+|..+..+++. +..+++++|+ +.+++.+++. .+++++.+|+.+ + ++
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 36789999999999999999874 6779999998 8887766532 268999999987 3 32
Q ss_pred C-C-CEEEecccccCC--ChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 265 R-G-DAIFLKWMLHGW--TDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 265 ~-~-D~i~~~~vLh~~--~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
. . |+|++..++|+. +.++...+|++++++|+|||.+++..+.
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 2 3 999999999986 4456779999999999999999998763
No 109
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.35 E-value=5.4e-13 Score=117.67 Aligned_cols=100 Identities=13% Similarity=0.191 Sum_probs=77.6
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC---CCCCC--CEEEe-cc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE---NVPRG--DAIFL-KW 273 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~---~~p~~--D~i~~-~~ 273 (370)
.+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4568999999999999999976433 48999998 8888776542 468999999875 35543 99998 55
Q ss_pred c--ccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 274 M--LHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 274 v--Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
. .+++.......+|++++++|||||+|++.+..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 4 34444445568899999999999999997764
No 110
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.33 E-value=1.1e-12 Score=117.95 Aligned_cols=96 Identities=19% Similarity=0.154 Sum_probs=80.5
Q ss_pred CCCeEEEEcCcccH----HHHHHHhhCC----CCeEEEeeh-hhHHHhCCCC----------------------------
Q 017495 207 GLKVLVDVGGGIGV----TLGMITSRYP----CIKGISFDL-PHVLANAPSF---------------------------- 249 (370)
Q Consensus 207 ~~~~vLDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-p~~~~~a~~~---------------------------- 249 (370)
+..+|+|+|||+|. +++.|++.++ +.++++.|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5666777655 468999998 8888876531
Q ss_pred ---------CCCeEEeccCCC-CCC--CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEE
Q 017495 250 ---------PGVEHVGGDMFE-NVP--RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 250 ---------~rv~~~~~D~~~-~~p--~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli 302 (370)
.+|.|..+|+.+ +++ .. |+|+|.++|++++++...+++++++++|+|||+|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 258999999998 565 23 999999999999988888999999999999999998
No 111
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.32 E-value=4e-12 Score=110.98 Aligned_cols=140 Identities=13% Similarity=0.104 Sum_probs=97.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCC----CCCCCeEEeccCCCC--CC---CC-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAP----SFPGVEHVGGDMFEN--VP---RG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~----~~~rv~~~~~D~~~~--~p---~~-D~i~~~ 272 (370)
+++..+|||+|||+|.++..+++. .|+-+++++|+ +.+++.++ +..++..+.+|...+ .+ .. |+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 678899999999999999999988 58889999998 88776543 346789999988762 12 22 887753
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
+++. ++...+++++++.|||||+++|.......+ .. . ... ...++-.+.|+++||+
T Consensus 155 --~~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d--------------~~----~-p~~-~~~~~ev~~L~~~GF~ 210 (233)
T 4df3_A 155 --VAQP--EQAAIVVRNARFFLRDGGYMLMAIKARSID--------------VT----T-EPS-EVYKREIKTLMDGGLE 210 (233)
T ss_dssp --CCCT--THHHHHHHHHHHHEEEEEEEEEEEECCHHH--------------HH----T-CCC-HHHHHHHHHHHHTTCC
T ss_pred --ccCC--hhHHHHHHHHHHhccCCCEEEEEEecccCC--------------CC----C-ChH-HHHHHHHHHHHHCCCE
Confidence 3332 345689999999999999999975432211 00 0 000 0123345678899999
Q ss_pred cceEEecC---CCeeEEEE
Q 017495 353 GLEIVCCA---YNSWVMEF 368 (370)
Q Consensus 353 ~v~~~~~~---~~~~~~e~ 368 (370)
.++...+. ..+.++.+
T Consensus 211 l~e~i~L~pf~~~H~lv~~ 229 (233)
T 4df3_A 211 IKDVVHLDPFDRDHAMIYA 229 (233)
T ss_dssp EEEEEECTTTSTTEEEEEE
T ss_pred EEEEEccCCCCCceEEEEE
Confidence 99887764 34555443
No 112
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.31 E-value=1.4e-11 Score=106.74 Aligned_cols=137 Identities=13% Similarity=0.079 Sum_probs=94.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhH----HHhCCCCCCCeEEeccCCCC-----CCCC-CEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHV----LANAPSFPGVEHVGGDMFEN-----VPRG-DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~----~~~a~~~~rv~~~~~D~~~~-----~p~~-D~i~~~~ 273 (370)
..+..+|||||||+|..+..+++..+..+++++|+ +.+ .+.++...++.++.+|+..+ .++. |+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45678999999999999999999988778999998 654 34444446788888998763 2333 999986
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHH----HHHHhC
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYE----ALAKNS 349 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~----~ll~~a 349 (370)
+.+ .++...+|++++++|||||+|++.-...+. + . ..+.+++. +.++++
T Consensus 134 ~~~---~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--------------~---------~-~~~~~~~~~~~~~~l~~~ 186 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKEKGEVVIMVKARSI--------------D---------S-TAEPEEVFKSVLKEMEGD 186 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH--------------C---------T-TSCHHHHHHHHHHHHHTT
T ss_pred ccC---hhHHHHHHHHHHHHhCCCCEEEEEEecCCc--------------c---------c-cCCHHHHHHHHHHHHHhh
Confidence 332 234456799999999999999997322100 0 0 01223321 237888
Q ss_pred CCCcceEEecC---CCeeEEEEeC
Q 017495 350 GFSGLEIVCCA---YNSWVMEFHK 370 (370)
Q Consensus 350 Gf~~v~~~~~~---~~~~~~e~~k 370 (370)
|++++..... ..+.++.++|
T Consensus 187 -f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 187 -FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp -SEEEEEEECTTTCTTEEEEEEEE
T ss_pred -cEEeeeecCCCCCCCcEEEEEEc
Confidence 9999988773 3556666553
No 113
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.31 E-value=3.2e-12 Score=110.56 Aligned_cols=101 Identities=17% Similarity=0.105 Sum_probs=83.9
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----CCCeEEeccCCC-CCCCC--CEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----PGVEHVGGDMFE-NVPRG--DAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~ 277 (370)
.+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++. .+++++.+|+.+ +.+.+ |+|++..++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 56789999999999999999998654 8999998 8877766542 579999999987 55543 99999998877
Q ss_pred CC-------------hhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 278 WT-------------DEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 278 ~~-------------d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
+. .++...+|++++++|+|||++++.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 55 3456799999999999999999988654
No 114
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.30 E-value=5.2e-12 Score=106.87 Aligned_cols=133 Identities=15% Similarity=0.121 Sum_probs=90.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC--CCCC-C-CEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE--NVPR-G-DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~--~~p~-~-D~i~~~~ 273 (370)
.++..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. ++++++..|+.. ..+. . |+|++..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 456789999999999999999987 789999998 8888877642 578999877655 1333 3 9998763
Q ss_pred -cccCC------ChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 274 -MLHGW------TDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 274 -vLh~~------~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
.+++- ..+....+|+++.++|||||++++.......... .......+|.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------------------~~~~~~~~~~~~l 156 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGD---------------------MEKDAVLEYVIGL 156 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------C---------------------HHHHHHHHHHHHS
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCH---------------------HHHHHHHHHHHhC
Confidence 33220 2245678899999999999999997764322100 0001134556666
Q ss_pred HhCCCCcceEEecC
Q 017495 347 KNSGFSGLEIVCCA 360 (370)
Q Consensus 347 ~~aGf~~v~~~~~~ 360 (370)
...+|.+.......
T Consensus 157 ~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 157 DQRVFTAMLYQPLN 170 (185)
T ss_dssp CTTTEEEEEEEESS
T ss_pred CCceEEEEEehhhc
Confidence 66788888777663
No 115
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.30 E-value=1.3e-12 Score=117.94 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=93.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCCCCCCC-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFENVPRG- 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~~~p~~- 266 (370)
.++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.++.+..
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4445454 667889999999999999999998 78899999998 887776543 147999999998865543
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHH
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEAL 345 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 345 (370)
|+|++ ++++. ..+|+++.++|+|||++++...... ..+++.++
T Consensus 180 fD~Vi~-----~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~-----------------------------~~~~~~~~ 223 (275)
T 1yb2_A 180 YDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLPNFD-----------------------------QSEKTVLS 223 (275)
T ss_dssp EEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEESSHH-----------------------------HHHHHHHH
T ss_pred ccEEEE-----cCcCH--HHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHH
Confidence 99997 34443 4889999999999999999764210 13456677
Q ss_pred HHhCCCCcceEEe
Q 017495 346 AKNSGFSGLEIVC 358 (370)
Q Consensus 346 l~~aGf~~v~~~~ 358 (370)
++++||+.+++..
T Consensus 224 l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 224 LSASGMHHLETVE 236 (275)
T ss_dssp SGGGTEEEEEEEE
T ss_pred HHHCCCeEEEEEE
Confidence 7888888877665
No 116
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.29 E-value=5.6e-12 Score=106.79 Aligned_cols=120 Identities=21% Similarity=0.219 Sum_probs=92.8
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC--C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR--G 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~--~ 266 (370)
.++..+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++. .++++..+|+.+..+. .
T Consensus 24 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 3444444 6677899999999999999999877 78999998 8777766542 5789999998763332 3
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHH
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEAL 345 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 345 (370)
|+|++..++++ ...+|+.+.++|+|||++++..... .+..++.++
T Consensus 101 ~D~v~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~~~~-----------------------------~~~~~~~~~ 146 (192)
T 1l3i_A 101 IDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAILL-----------------------------ETKFEAMEC 146 (192)
T ss_dssp EEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEECBH-----------------------------HHHHHHHHH
T ss_pred CCEEEECCchHH-----HHHHHHHHHHhcCCCcEEEEEecCc-----------------------------chHHHHHHH
Confidence 99999888764 3688999999999999999865421 024568889
Q ss_pred HHhCCCCc
Q 017495 346 AKNSGFSG 353 (370)
Q Consensus 346 l~~aGf~~ 353 (370)
+++.||.+
T Consensus 147 l~~~g~~~ 154 (192)
T 1l3i_A 147 LRDLGFDV 154 (192)
T ss_dssp HHHTTCCC
T ss_pred HHHCCCce
Confidence 99999943
No 117
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.29 E-value=7.8e-12 Score=111.42 Aligned_cols=127 Identities=13% Similarity=0.126 Sum_probs=99.8
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRG 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~ 266 (370)
..++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. ++++++.+|+.+..+..
T Consensus 83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 34555555 677889999999999999999999 78999999998 8888877642 45999999998866653
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
|+|++ ++++. ..+|+++.++|+|||++++..+... ..+++.+
T Consensus 162 ~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~ 205 (255)
T 3mb5_A 162 NVDHVIL-----DLPQP--ERVVEHAAKALKPGGFFVAYTPCSN-----------------------------QVMRLHE 205 (255)
T ss_dssp SEEEEEE-----CSSCG--GGGHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHHH
T ss_pred CcCEEEE-----CCCCH--HHHHHHHHHHcCCCCEEEEEECCHH-----------------------------HHHHHHH
Confidence 99987 34443 4789999999999999999654211 1346778
Q ss_pred HHHhCC--CCcceEEec
Q 017495 345 LAKNSG--FSGLEIVCC 359 (370)
Q Consensus 345 ll~~aG--f~~v~~~~~ 359 (370)
+++++| |..+++...
T Consensus 206 ~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 206 KLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHTGGGBSCCEEECC
T ss_pred HHHHcCCCccccEEEEE
Confidence 889999 988877654
No 118
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.29 E-value=2.6e-11 Score=106.14 Aligned_cols=141 Identities=16% Similarity=0.092 Sum_probs=97.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHh----CCCCCCCeEEeccCCCC-----CCCC-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLAN----APSFPGVEHVGGDMFEN-----VPRG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~----a~~~~rv~~~~~D~~~~-----~p~~-D~i~~~ 272 (370)
..+..+|||+|||+|.++..+++.+ |..+++++|. +.+++. ++...+++++.+|+.+. .+.. |+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 5567899999999999999999885 6679999998 754443 34446899999999872 2233 999975
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
.. .......++++++++|+|||++++. .......... .......+++.++ +++ |+
T Consensus 151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~------------------~~~~~~~~~l~~l-~~~-f~ 205 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTK------------------EPEQVFREVEREL-SEY-FE 205 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTS------------------CHHHHHHHHHHHH-HTT-SE
T ss_pred CC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCC------------------ChhhhhHHHHHHH-Hhh-ce
Confidence 44 2233446699999999999999998 2211110000 0001235677777 777 99
Q ss_pred cceEEecCCC---eeEEEEeC
Q 017495 353 GLEIVCCAYN---SWVMEFHK 370 (370)
Q Consensus 353 ~v~~~~~~~~---~~~~e~~k 370 (370)
+++....... +.++.++|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 206 VIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEEC
T ss_pred eeeEeccCcccCCCEEEEEEe
Confidence 9988877544 56666554
No 119
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.29 E-value=1.3e-11 Score=107.16 Aligned_cols=98 Identities=23% Similarity=0.313 Sum_probs=77.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-C--CCCC--CEEEeccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-N--VPRG--DAIFLKWM 274 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~--~p~~--D~i~~~~v 274 (370)
+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++. ++++++.+|+.+ + ++.+ |+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 457999999999999999999999999999998 8888776542 579999999987 3 4443 99998765
Q ss_pred ccCCChh------HHHHHHHHHHHhCCCCcEEEEEe
Q 017495 275 LHGWTDE------HCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 275 Lh~~~d~------~~~~iL~~~~~~L~pgG~lli~e 304 (370)
.+..... ....+|+.+.++|+|||.|++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 4321110 12479999999999999999854
No 120
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.28 E-value=8e-12 Score=111.49 Aligned_cols=120 Identities=19% Similarity=0.198 Sum_probs=94.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---C--CCeEEeccCCCCCCC-C-CEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---P--GVEHVGGDMFENVPR-G-DAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~--rv~~~~~D~~~~~p~-~-D~i~~~~vLh~ 277 (370)
.+..+|||+|||+|.++..+++..+ +++++|+ |.+++.++++ . .+++..+|+.+..+. . |+|+++...|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 4678999999999999999988655 9999998 8888776642 1 288999998764433 3 9999865443
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~ 357 (370)
....+++.+.++|+|||++++.+.... +.+++.++++++||+++++.
T Consensus 196 ----~~~~~l~~~~~~LkpgG~lils~~~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 196 ----LHAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ----HHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTCEEEEEE
T ss_pred ----HHHHHHHHHHHHcCCCCEEEEEeeccC-----------------------------CHHHHHHHHHHCCCEEEEEe
Confidence 356899999999999999999765321 25689999999999999887
Q ss_pred ecCC
Q 017495 358 CCAY 361 (370)
Q Consensus 358 ~~~~ 361 (370)
....
T Consensus 243 ~~~~ 246 (254)
T 2nxc_A 243 AEGE 246 (254)
T ss_dssp EETT
T ss_pred ccCC
Confidence 7643
No 121
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.27 E-value=1.4e-11 Score=107.90 Aligned_cols=126 Identities=19% Similarity=0.160 Sum_probs=93.7
Q ss_pred CCCCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC--CCCCC--CEEEecc
Q 017495 205 FDGLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE--NVPRG--DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~--~~p~~--D~i~~~~ 273 (370)
.++..+|||+||| +|.++..+++.. ..+++++|. +.+++.+++. .+++++.+|+.. +.+.. |+|++.-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4577899999999 999999999986 789999998 8888877642 269999999643 44433 9999886
Q ss_pred cccCCChhH-----------------HHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcc
Q 017495 274 MLHGWTDEH-----------------CLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRE 336 (370)
Q Consensus 274 vLh~~~d~~-----------------~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 336 (370)
.+++.++.. ...+|+.+.+.|+|||++++......
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------------- 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE---------------------------- 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH----------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH----------------------------
Confidence 665543321 36899999999999999999633210
Q ss_pred cCHHHHHHHHHhCCCCcceEEec
Q 017495 337 RSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 337 ~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
...+++.++++++||++..+...
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~~~ 206 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIKFK 206 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEC
T ss_pred hHHHHHHHHHHHcCCceEEEEec
Confidence 12467889999999977666544
No 122
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.27 E-value=2.4e-12 Score=112.72 Aligned_cols=114 Identities=12% Similarity=0.094 Sum_probs=88.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-CCCCeEEeccCCC--CCC-CC--CEEEecccccCC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-FPGVEHVGGDMFE--NVP-RG--DAIFLKWMLHGW 278 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~D~~~--~~p-~~--D~i~~~~vLh~~ 278 (370)
++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .. |+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 46789999999999999999997 579999998 888887765 3679999999965 444 33 9999871
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEe
Q 017495 279 TDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 279 ~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~ 358 (370)
+...+|++++++|+|||+|+.. +...+.+++.++++++||+.+.+..
T Consensus 120 ---~~~~~l~~~~~~LkpgG~l~~~------------------------------~~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 120 ---GPTSVILRLPELAAPDAHFLYV------------------------------GPRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp ---CCSGGGGGHHHHEEEEEEEEEE------------------------------ESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCcEEEEe------------------------------CCcCCHHHHHHHHHHCCCeEEEEEe
Confidence 2247899999999999999910 0012345788899999998877654
Q ss_pred c
Q 017495 359 C 359 (370)
Q Consensus 359 ~ 359 (370)
.
T Consensus 167 ~ 167 (226)
T 3m33_A 167 V 167 (226)
T ss_dssp E
T ss_pred e
Confidence 3
No 123
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.27 E-value=2.3e-11 Score=104.81 Aligned_cols=121 Identities=19% Similarity=0.172 Sum_probs=92.8
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------C-CCeEEeccCCCCCC---CC
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------P-GVEHVGGDMFENVP---RG 266 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~-rv~~~~~D~~~~~p---~~ 266 (370)
++..+. ..+..+|||||||+|.++..+++. ..+++++|. +.+++.+++. . +++++.+|+.+..+ ..
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 444455 667789999999999999999987 789999998 8888876642 3 79999999987322 34
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
|+|++...+ + .. +++.+.++|+|||+|++..... .+..++.+++
T Consensus 124 D~v~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~~~~-----------------------------~~~~~~~~~l 167 (204)
T 3njr_A 124 EAVFIGGGG----S--QA-LYDRLWEWLAPGTRIVANAVTL-----------------------------ESETLLTQLH 167 (204)
T ss_dssp SEEEECSCC----C--HH-HHHHHHHHSCTTCEEEEEECSH-----------------------------HHHHHHHHHH
T ss_pred CEEEECCcc----c--HH-HHHHHHHhcCCCcEEEEEecCc-----------------------------ccHHHHHHHH
Confidence 999987744 1 23 8999999999999999855421 0245677888
Q ss_pred HhCCCCcceEE
Q 017495 347 KNSGFSGLEIV 357 (370)
Q Consensus 347 ~~aGf~~v~~~ 357 (370)
++.||++.++.
T Consensus 168 ~~~g~~i~~i~ 178 (204)
T 3njr_A 168 ARHGGQLLRID 178 (204)
T ss_dssp HHHCSEEEEEE
T ss_pred HhCCCcEEEEE
Confidence 88998877653
No 124
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.27 E-value=6.4e-12 Score=105.01 Aligned_cols=97 Identities=15% Similarity=0.052 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCC-CC-CEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVP-RG-DAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p-~~-D~i~~~~vLh~ 277 (370)
.++.+|||+|||+|.++..++...|+.+++++|. +.+++.++++ ...++...|..+..| .. |+|++..+||+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LHl 127 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPV 127 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHHh
Confidence 4688999999999999999999999999999998 9999887753 112344467665333 33 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
+ + +....+.++++.|+|||.++-.+
T Consensus 128 L-~-~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 128 L-K-QQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp H-H-HTTCCHHHHHHTCEEEEEEEEEE
T ss_pred h-h-hhHHHHHHHHHHhCCCCEEEEeC
Confidence 9 3 44566779999999999888877
No 125
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.26 E-value=5.8e-12 Score=107.69 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=80.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-C-CC-CC-CEEEe
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-N-VP-RG-DAIFL 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~-~p-~~-D~i~~ 271 (370)
.++..+|||+|||+|.++..+++.+ |..+++++|. +.+++.+++. ++++++.+|+.+ + .. .. |+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4567899999999999999999986 6779999998 8888877643 579999999876 2 33 33 99998
Q ss_pred ccccc-------CCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 272 KWMLH-------GWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 272 ~~vLh-------~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
...+. ....++...+|+++.++|+|||++++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 76541 1122345679999999999999999987643
No 126
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.26 E-value=7.8e-12 Score=109.97 Aligned_cols=141 Identities=12% Similarity=0.007 Sum_probs=95.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhH----HHhCCCCCCCeEEeccCCCC--CC---CC-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHV----LANAPSFPGVEHVGGDMFEN--VP---RG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~----~~~a~~~~rv~~~~~D~~~~--~p---~~-D~i~~~ 272 (370)
+.+..+|||+|||+|.++..+++.+ |..+++++|+ +.+ .+.++...+++++.+|+.+. .+ .. |+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5567899999999999999999986 7789999998 553 44444447899999999872 22 23 999985
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
.. ..+....++++++++|+|||++++.-......... .... +-..+ .++|+++||+
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~----------~~~~---------~~~~~-~~~l~~~Gf~ 210 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTA----------SAEA---------VFASE-VKKMQQENMK 210 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSS----------CHHH---------HHHHH-HHTTGGGTEE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCC----------CHHH---------HHHHH-HHHHHHCCCc
Confidence 44 23345677999999999999999943211000000 0000 00123 5889999999
Q ss_pred cceEEecCC---CeeEEEEe
Q 017495 353 GLEIVCCAY---NSWVMEFH 369 (370)
Q Consensus 353 ~v~~~~~~~---~~~~~e~~ 369 (370)
+++...... .+.++.++
T Consensus 211 ~~~~~~~~~~~~~~~~v~~~ 230 (233)
T 2ipx_A 211 PQEQLTLEPYERDHAVVVGV 230 (233)
T ss_dssp EEEEEECTTTSSSEEEEEEE
T ss_pred eEEEEecCCccCCcEEEEEE
Confidence 998776543 34544443
No 127
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.26 E-value=1.6e-11 Score=109.76 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=78.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCCC--CEEEecccccCCChhH
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEH 282 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~ 282 (370)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++...-.++.+|+.+ +.+.+ |+|++..+++|+.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 6689999999999999999986 568999998 8888877643222388999887 65543 999998877666433
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeec
Q 017495 283 CLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 283 ~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
...+|++++++|+|||++++..+.
T Consensus 131 ~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 131 KDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 579999999999999999997764
No 128
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.25 E-value=1.4e-11 Score=112.86 Aligned_cols=129 Identities=14% Similarity=0.130 Sum_probs=94.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCC-CC--CC-C-CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFE-NV--PR-G-DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~-~~--p~-~-D~i 269 (370)
+++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ ..+++++.+|+.+ .. +. . |+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998877889999998 888876653 2579999999876 21 33 3 999
Q ss_pred EecccccCCChhHH--HHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHH
Q 017495 270 FLKWMLHGWTDEHC--LKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 270 ~~~~vLh~~~d~~~--~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 347 (370)
++....+..+.... ..++++++++|+|||+|++..... +.+ .....++.+.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~~-----------~~~~~~~~~~l~ 228 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------------WLD-----------LELIEKMSRFIR 228 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------------TTC-----------HHHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------ccc-----------hHHHHHHHHHHH
Confidence 99777665543332 589999999999999999864211 000 113567889999
Q ss_pred hCCCCcceEEec
Q 017495 348 NSGFSGLEIVCC 359 (370)
Q Consensus 348 ~aGf~~v~~~~~ 359 (370)
++||..+.+...
T Consensus 229 ~~GF~~v~~~~~ 240 (304)
T 3bwc_A 229 ETGFASVQYALM 240 (304)
T ss_dssp HHTCSEEEEEEC
T ss_pred hCCCCcEEEEEe
Confidence 999998887654
No 129
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.23 E-value=7.5e-11 Score=103.11 Aligned_cols=141 Identities=16% Similarity=0.144 Sum_probs=94.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHH----HhCCCCCCCeEEeccCCCCC-----CCC-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVL----ANAPSFPGVEHVGGDMFENV-----PRG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~----~~a~~~~rv~~~~~D~~~~~-----p~~-D~i~~~ 272 (370)
+.+..+|||+|||+|.++..+++. .|..+++++|+ +.++ +.+++..++.++.+|+..+. .+. |+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 567899999999999999999987 46789999998 7553 33444468999999987631 223 999887
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
... + ++...+++.+++.|||||+|++....... |.. ....+ ..++..+.|+++||+
T Consensus 154 ~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~~--------------d~t-----~~~~e-~~~~~~~~L~~~gf~ 209 (232)
T 3id6_C 154 IAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARSI--------------DVT-----KDPKE-IYKTEVEKLENSNFE 209 (232)
T ss_dssp CCC---T-THHHHHHHHHHHHEEEEEEEEEEEC--------------------------CCSSS-STTHHHHHHHHTTEE
T ss_pred CCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCCc--------------ccC-----CCHHH-HHHHHHHHHHHCCCE
Confidence 543 2 23344556777799999999997422111 100 01111 112345677889999
Q ss_pred cceEEecC---CCeeEEEEe
Q 017495 353 GLEIVCCA---YNSWVMEFH 369 (370)
Q Consensus 353 ~v~~~~~~---~~~~~~e~~ 369 (370)
+++...+. ..+.++.++
T Consensus 210 ~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 210 TIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp EEEEEECTTTCSSCEEEEEE
T ss_pred EEEEeccCCCcCceEEEEEE
Confidence 99988874 356666654
No 130
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.23 E-value=1.9e-11 Score=110.09 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=78.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCCCEEEeccccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRGDAIFLKWMLH 276 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~D~i~~~~vLh 276 (370)
..++.+|||||||+|.++..++.+.++.+++++|+ |.+++.|++. ++++++.+|+.+ +....|+|++....
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~~- 198 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALA- 198 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTTC-
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCCc-
Confidence 67889999999999988776666778999999998 9999888753 689999999987 31123999986542
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+ +..++++.++++|||||+|++.+.
T Consensus 199 --~--d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 199 --E--PKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp --S--CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred --c--CHHHHHHHHHHHcCCCcEEEEEcC
Confidence 2 346899999999999999999763
No 131
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.22 E-value=7.4e-12 Score=110.68 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=92.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCC----CC-CEEEec
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVP----RG-DAIFLK 272 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p----~~-D~i~~~ 272 (370)
.+..+|||||||+|..+..++...|+.+++++|. +.+++.+++. .+++++.+|+.+ +.+ .. |+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4668999999999999999998889999999998 8787776542 469999999876 432 33 999987
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
.+ . +...+++.+.++|+|||++++....... ...+++.+.++++||+
T Consensus 149 ~~----~--~~~~~l~~~~~~LkpgG~l~~~~g~~~~---------------------------~~~~~~~~~l~~~g~~ 195 (240)
T 1xdz_A 149 AV----A--RLSVLSELCLPLVKKNGLFVALKAASAE---------------------------EELNAGKKAITTLGGE 195 (240)
T ss_dssp CC----S--CHHHHHHHHGGGEEEEEEEEEEECC-CH---------------------------HHHHHHHHHHHHTTEE
T ss_pred cc----C--CHHHHHHHHHHhcCCCCEEEEEeCCCch---------------------------HHHHHHHHHHHHcCCe
Confidence 63 2 2468999999999999999986321100 0134677889999999
Q ss_pred cceEEe
Q 017495 353 GLEIVC 358 (370)
Q Consensus 353 ~v~~~~ 358 (370)
++++..
T Consensus 196 ~~~~~~ 201 (240)
T 1xdz_A 196 LENIHS 201 (240)
T ss_dssp EEEEEE
T ss_pred EeEEEE
Confidence 887765
No 132
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.22 E-value=1.3e-11 Score=103.50 Aligned_cols=109 Identities=9% Similarity=0.050 Sum_probs=83.9
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--CCCeEEeccCCC-CC---CCC--CEEEecccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--PGVEHVGGDMFE-NV---PRG--DAIFLKWML 275 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~D~~~-~~---p~~--D~i~~~~vL 275 (370)
..+..+|||||||. +.+|. +.+++.++++ .+++++.+|+.+ +. +.. |+|++.+++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56788999999996 12776 7787776643 359999999987 44 443 999999999
Q ss_pred cCC-ChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCC
Q 017495 276 HGW-TDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGF 351 (370)
Q Consensus 276 h~~-~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf 351 (370)
||+ ++. ..+|++++++|||||+|++.++...... .....++.++|.++|+++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRPGGCLFLKEPVETAVD--------------------NNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEESSSC--------------------SSSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCH--HHHHHHHHHHCCCCEEEEEEcccccccc--------------------cccccCCHHHHHHHHHHCCC
Confidence 998 654 6899999999999999999765432210 01223578999999999999
No 133
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.21 E-value=1.8e-11 Score=109.03 Aligned_cols=126 Identities=17% Similarity=0.137 Sum_probs=96.6
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPR 265 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~ 265 (370)
..++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. +++++..+|+.+ +++.
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 35555555 777889999999999999999998 67899999998 8877766532 579999999987 3664
Q ss_pred C--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHH
Q 017495 266 G--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYE 343 (370)
Q Consensus 266 ~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~ 343 (370)
. |+|++ ++++. ..+|+++.++|+|||++++..+... ...++.
T Consensus 165 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 208 (258)
T 2pwy_A 165 AAYDGVAL-----DLMEP--WKVLEKAALALKPDRFLVAYLPNIT-----------------------------QVLELV 208 (258)
T ss_dssp TCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEESCHH-----------------------------HHHHHH
T ss_pred CCcCEEEE-----CCcCH--HHHHHHHHHhCCCCCEEEEEeCCHH-----------------------------HHHHHH
Confidence 3 99987 23433 4789999999999999999774220 123566
Q ss_pred HHHHhCCCCcceEEe
Q 017495 344 ALAKNSGFSGLEIVC 358 (370)
Q Consensus 344 ~ll~~aGf~~v~~~~ 358 (370)
+.++++||+.+++..
T Consensus 209 ~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 209 RAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHTTTTEEEEEEEE
T ss_pred HHHHHCCCceEEEEE
Confidence 677788998776554
No 134
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.21 E-value=6.7e-11 Score=105.72 Aligned_cols=124 Identities=12% Similarity=0.116 Sum_probs=93.6
Q ss_pred CC-CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-C--CCC-C-CEEE
Q 017495 205 FD-GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-N--VPR-G-DAIF 270 (370)
Q Consensus 205 ~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~--~p~-~-D~i~ 270 (370)
.+ +..+|||+|||+|.++..++++.+. +++++|+ +.+++.++++ ++++++.+|+.+ . ++. . |+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 56 6789999999999999999998766 9999998 8888877642 479999999987 2 333 3 9999
Q ss_pred ecccccCC------------------ChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcC
Q 017495 271 LKWMLHGW------------------TDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTT 332 (370)
Q Consensus 271 ~~~vLh~~------------------~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 332 (370)
++-.++.. .......+++.+.++|+|||+++++.. .
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~----------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---P----------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---T-----------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---H-----------------------
Confidence 96433221 113346899999999999999999421 1
Q ss_pred CCcccCHHHHHHHHHhCCCCcceEEec
Q 017495 333 GGRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 333 ~~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
....++.+++++.||....+.+.
T Consensus 179 ----~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 ----ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp ----TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred ----HHHHHHHHHHHHCCCceEEEEEe
Confidence 02456788889999998877665
No 135
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.21 E-value=1e-12 Score=117.27 Aligned_cols=145 Identities=11% Similarity=0.018 Sum_probs=95.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC----CCC----CC-CEE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE----NVP----RG-DAI 269 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~----~~p----~~-D~i 269 (370)
+..+|||+|||+|.++..++.++|+.+++++|+ +.+++.++++ ++++++.+|+.+ +.+ .. |+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 467999999999999999999888899999998 8888877642 469999999543 344 23 999
Q ss_pred EecccccCCCh-------------hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcc
Q 017495 270 FLKWMLHGWTD-------------EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRE 336 (370)
Q Consensus 270 ~~~~vLh~~~d-------------~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 336 (370)
++.-..|.... +....++..++++|||||.+.+++...... ........+... ..+..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~--------~~~l~~~g~~~~-~~~~~ 215 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS--------LQLKKRLRWYSC-MLGKK 215 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH--------HHHGGGBSCEEE-EESST
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH--------HhcccceEEEEE-CCCCh
Confidence 99865554320 112356788999999999998876543210 000000000000 12333
Q ss_pred cCHHHHHHHHHhCCCCcceEEecC
Q 017495 337 RSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 337 ~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
.+.+++.++|+++||+.+++....
T Consensus 216 ~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 216 CSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp TSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCceEEEEEe
Confidence 456889999999999999877764
No 136
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.21 E-value=2.4e-11 Score=114.33 Aligned_cols=108 Identities=20% Similarity=0.210 Sum_probs=85.7
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---------CCCeEEeccCCCCCCCC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---------PGVEHVGGDMFENVPRG 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---------~rv~~~~~D~~~~~p~~ 266 (370)
.++..++ .....+|||+|||+|.++..+++.+|..+++++|. +.+++.++++ .++++..+|+.++.+..
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 3455555 44558999999999999999999999999999998 8888877652 14788999999866643
Q ss_pred --CEEEecccccC---CChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 --DAIFLKWMLHG---WTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 --D~i~~~~vLh~---~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|+|++.-.+|+ ..+.....+|+.+.+.|+|||+++++..
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 99999988885 3344556899999999999999999653
No 137
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.20 E-value=7.1e-11 Score=106.47 Aligned_cols=149 Identities=13% Similarity=0.101 Sum_probs=94.7
Q ss_pred HHHHHhhcCCC-CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHh-CCCCCCCeEEe-ccCCC----CCCC--
Q 017495 196 NKILDVYRGFD-GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLAN-APSFPGVEHVG-GDMFE----NVPR-- 265 (370)
Q Consensus 196 ~~l~~~~~~~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~-a~~~~rv~~~~-~D~~~----~~p~-- 265 (370)
..++..+. .. +..+|||||||||.++..+++. +..+++++|. +.+++. .+...++.... .|+.. ..|.
T Consensus 74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~ 151 (291)
T 3hp7_A 74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL 151 (291)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred HHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence 34555555 43 4679999999999999988886 4568999998 777766 33334443332 23221 2333
Q ss_pred CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCC-CCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 266 GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLV-PENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 266 ~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
.|+|++...+|++ ..+|..++++|+|||++++.- .|.- .............+.. ...++.+++.+
T Consensus 152 fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lv--kPqfe~~~~~~~~~G~vrd~~-------~~~~~~~~v~~ 217 (291)
T 3hp7_A 152 PSFASIDVSFISL-----NLILPALAKILVDGGQVVALV--KPQFEAGREQIGKNGIVRESS-------IHEKVLETVTA 217 (291)
T ss_dssp CSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CGGGTSCGGGCC-CCCCCCHH-------HHHHHHHHHHH
T ss_pred CCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEE--CcccccChhhcCCCCccCCHH-------HHHHHHHHHHH
Confidence 3999998888754 478999999999999999862 1110 0000000000000100 01235788999
Q ss_pred HHHhCCCCcceEEecC
Q 017495 345 LAKNSGFSGLEIVCCA 360 (370)
Q Consensus 345 ll~~aGf~~v~~~~~~ 360 (370)
+++++||++..+...+
T Consensus 218 ~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 218 FAVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHHTTEEEEEEEECS
T ss_pred HHHHCCCEEEEEEECC
Confidence 9999999998877754
No 138
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.20 E-value=3.7e-11 Score=100.97 Aligned_cols=120 Identities=13% Similarity=0.126 Sum_probs=92.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC--CC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR--GD 267 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~--~D 267 (370)
.+...+. ..+..+|||+|||+|.++..+++ +..+++++|. +.+++.+++. .+++++.+|+.++.+. .|
T Consensus 26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 4444454 56778999999999999999998 8889999998 8888776643 5799999998875443 39
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHH
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 347 (370)
+|++..+ + +...+++.+++. |||++++...... +..++.++++
T Consensus 103 ~i~~~~~-~-----~~~~~l~~~~~~--~gG~l~~~~~~~~-----------------------------~~~~~~~~l~ 145 (183)
T 2yxd_A 103 KAFIGGT-K-----NIEKIIEILDKK--KINHIVANTIVLE-----------------------------NAAKIINEFE 145 (183)
T ss_dssp EEEECSC-S-----CHHHHHHHHHHT--TCCEEEEEESCHH-----------------------------HHHHHHHHHH
T ss_pred EEEECCc-c-----cHHHHHHHHhhC--CCCEEEEEecccc-----------------------------cHHHHHHHHH
Confidence 9999888 2 335789999888 9999999764210 1356788999
Q ss_pred hCCCCcceE
Q 017495 348 NSGFSGLEI 356 (370)
Q Consensus 348 ~aGf~~v~~ 356 (370)
++||.+..+
T Consensus 146 ~~g~~~~~~ 154 (183)
T 2yxd_A 146 SRGYNVDAV 154 (183)
T ss_dssp HTTCEEEEE
T ss_pred HcCCeEEEE
Confidence 999876554
No 139
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.20 E-value=1.1e-11 Score=115.66 Aligned_cols=109 Identities=19% Similarity=0.213 Sum_probs=87.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCCC-CEE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPRG-DAI 269 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~~-D~i 269 (370)
.++..+. .....+|||||||+|.++..+++.+|..+++++|. +.+++.+++. ..++++.+|+.+..+.. |+|
T Consensus 187 ~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~I 265 (343)
T 2pjd_A 187 LLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDMI 265 (343)
T ss_dssp HHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEEE
T ss_pred HHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeEE
Confidence 4455554 33467999999999999999999999999999998 8878776542 24678899988744444 999
Q ss_pred EecccccC---CChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 270 FLKWMLHG---WTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 270 ~~~~vLh~---~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
++...+|+ ++.+....+|++++++|+|||.++++...
T Consensus 266 v~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 266 ISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred EECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 99999986 24456789999999999999999997753
No 140
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.20 E-value=1.4e-10 Score=99.21 Aligned_cols=107 Identities=19% Similarity=0.164 Sum_probs=79.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC--CCeEEEeehhhHHHhCCCCCCCeEEeccCCC-C---------
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP--CIKGISFDLPHVLANAPSFPGVEHVGGDMFE-N--------- 262 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~-~--------- 262 (370)
+.++.+.+..+.+..+|||||||+|.++..+++.+| ..+++++|+..+ ....+++++.+|+.+ +
T Consensus 10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~~~~~~~~~~~ 85 (201)
T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKDNMNNIKNINY 85 (201)
T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTTSSCCC-----
T ss_pred HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccchhhhhhccccc
Confidence 334555554346678999999999999999999998 689999998432 123579999999987 3
Q ss_pred ----------------CCC-C-CEEEecccccCCC----hhH-----HHHHHHHHHHhCCCCcEEEEEee
Q 017495 263 ----------------VPR-G-DAIFLKWMLHGWT----DEH-----CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 263 ----------------~p~-~-D~i~~~~vLh~~~----d~~-----~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.+. . |+|++...+|+.. +.. ..++|+.++++|+|||++++..+
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 343 3 9999988777532 111 12489999999999999998443
No 141
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.19 E-value=9.1e-11 Score=97.81 Aligned_cols=108 Identities=17% Similarity=0.147 Sum_probs=84.0
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeehhhHHHhCCCCCCCeEEeccCCC-C--------CCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDLPHVLANAPSFPGVEHVGGDMFE-N--------VPR 265 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~-~--------~p~ 265 (370)
..+...+....+..+|||+|||+|.++..+++.+ |+.+++++|...+++ ..++++..+|+.+ + .+.
T Consensus 11 ~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCC
Confidence 3455555435567899999999999999999985 778999999843432 2579999999987 4 554
Q ss_pred C--CEEEecccccCCChhH---------HHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 266 G--DAIFLKWMLHGWTDEH---------CLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 266 ~--D~i~~~~vLh~~~d~~---------~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
. |+|++...+|+..... ...+|+++.++|+|||.+++.....
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 3 9999998888765431 1588999999999999999977643
No 142
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.18 E-value=1.3e-11 Score=119.65 Aligned_cols=106 Identities=19% Similarity=0.143 Sum_probs=86.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCCeEEeccCCC-CCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHVGGDMFE-NVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~ 266 (370)
...++..+. ..+..+|||||||+|.++..+++ .+..+++++|+..+++.+++. ++|+++.+|+.+ +.++.
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 445566555 45678999999999999998887 577899999984476655431 579999999988 66655
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEE
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli 302 (370)
|+|++..++|++.+++....+..+++.|+|||++++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 999998888888777778888999999999999985
No 143
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.18 E-value=1.6e-11 Score=106.85 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=76.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCCC----CCCC--CEEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFEN----VPRG--DAIFLKW 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~~----~p~~--D~i~~~~ 273 (370)
...+|||||||+|.++..+++.+|+..++++|. +.+++.+++ ..+++++.+|+.+. ++.+ |.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 457999999999999999999999999999998 887776653 25799999998762 4544 9888865
Q ss_pred cccCCChhHH------HHHHHHHHHhCCCCcEEEEEee
Q 017495 274 MLHGWTDEHC------LKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 274 vLh~~~d~~~------~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.......... ..+++.++++|||||+|++...
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 4432222211 2599999999999999998653
No 144
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.18 E-value=3.8e-11 Score=104.12 Aligned_cols=98 Identities=19% Similarity=0.256 Sum_probs=75.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC-C--CCCC--CEEEeccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE-N--VPRG--DAIFLKWM 274 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~-~--~p~~--D~i~~~~v 274 (370)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++.+ |.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 457899999999999999999999999999998 888877654 2579999999876 2 4443 98877543
Q ss_pred ccCCChhH------HHHHHHHHHHhCCCCcEEEEEe
Q 017495 275 LHGWTDEH------CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 275 Lh~~~d~~------~~~iL~~~~~~L~pgG~lli~e 304 (370)
..+....+ ...+|+.++++|+|||.|++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 32111100 2578999999999999999864
No 145
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.17 E-value=1.2e-10 Score=110.73 Aligned_cols=112 Identities=18% Similarity=0.279 Sum_probs=86.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhC-------CC--------CCCCeEEecc
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANA-------PS--------FPGVEHVGGD 258 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a-------~~--------~~rv~~~~~D 258 (370)
+..++..+. ..+..+|||||||+|.++..+++.++..+++++|+ +.+++.+ ++ ..+++++.+|
T Consensus 231 v~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD 309 (433)
T 1u2z_A 231 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309 (433)
T ss_dssp HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence 344555555 67788999999999999999999888888999998 7766655 32 2578898876
Q ss_pred CCC-C--C----CCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCC
Q 017495 259 MFE-N--V----PRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLV 310 (370)
Q Consensus 259 ~~~-~--~----p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~ 310 (370)
... + + ...|+|++.++++. ++...+|+++.+.|+|||+|++.+...+..
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn~~l~~---~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred ccccccccccccCCCCEEEEeCcccc---ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 543 2 1 12399999877742 456788999999999999999998877654
No 146
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.17 E-value=2.9e-11 Score=105.42 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=77.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCC-------C-CCE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVP-------R-GDA 268 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p-------~-~D~ 268 (370)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+..+ . .|+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 4578999999999999999999998 789999998 8887766532 469999999875211 2 399
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
|++.... .....+++.+.++|+|||.|++.+...
T Consensus 137 v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 137 IFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp EEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred EEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 9876542 345689999999999999888866554
No 147
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.16 E-value=2.9e-11 Score=106.21 Aligned_cols=142 Identities=16% Similarity=0.137 Sum_probs=87.3
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CC--------CeEEe-ccCCCCCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PG--------VEHVG-GDMFENVP 264 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~r--------v~~~~-~D~~~~~p 264 (370)
..++..+.......+|||||||+|.++..+++. ...+++++|+ +.+++.+++. .+ +.+.. .|+....+
T Consensus 26 ~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (232)
T 3opn_A 26 EKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRP 104 (232)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCC
T ss_pred HHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCC
Confidence 344455542234579999999999999999987 3348999998 7777664332 22 33222 22221111
Q ss_pred CCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCC-------ccc
Q 017495 265 RGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGG-------RER 337 (370)
Q Consensus 265 ~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-------~~~ 337 (370)
|.+.+..++.++ ..+|+.++++|||||++++.. .+. +..... .. ...| ...
T Consensus 105 --d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~---------~e~~~~--~~--~~~G~~~d~~~~~~ 162 (232)
T 3opn_A 105 --SFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQ---------FEAGRE--QV--GKNGIIRDPKVHQM 162 (232)
T ss_dssp --SEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHH---------HHSCHH--HH--C-CCCCCCHHHHHH
T ss_pred --CEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--Ccc---------cccCHH--Hh--CcCCeecCcchhHH
Confidence 444444444433 478999999999999999953 110 000000 00 0011 123
Q ss_pred CHHHHHHHHHhCCCCcceEEecC
Q 017495 338 SKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 338 t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
+.+++.++++++||+++.+...+
T Consensus 163 ~~~~l~~~l~~aGf~v~~~~~~p 185 (232)
T 3opn_A 163 TIEKVLKTATQLGFSVKGLTFSP 185 (232)
T ss_dssp HHHHHHHHHHHHTEEEEEEEECS
T ss_pred HHHHHHHHHHHCCCEEEEEEEcc
Confidence 67899999999999998887653
No 148
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.16 E-value=4.4e-11 Score=108.04 Aligned_cols=127 Identities=20% Similarity=0.234 Sum_probs=96.0
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC-
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR- 265 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~- 265 (370)
..++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. ++++++.+|+.+..+.
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 35555555 677889999999999999999999 67899999998 8887776542 4789999999876554
Q ss_pred C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 266 G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
. |+|++ +.++. ..+|+++.++|+|||+|++...... ...++.+
T Consensus 181 ~~D~V~~-----~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~-----------------------------~~~~~~~ 224 (277)
T 1o54_A 181 DVDALFL-----DVPDP--WNYIDKCWEALKGGGRFATVCPTTN-----------------------------QVQETLK 224 (277)
T ss_dssp SEEEEEE-----CCSCG--GGTHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHHH
T ss_pred ccCEEEE-----CCcCH--HHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHH
Confidence 3 99987 23433 4789999999999999999764210 1234566
Q ss_pred HHHhCCCCcceEEec
Q 017495 345 LAKNSGFSGLEIVCC 359 (370)
Q Consensus 345 ll~~aGf~~v~~~~~ 359 (370)
.|+++||+.+++...
T Consensus 225 ~l~~~gf~~~~~~~~ 239 (277)
T 1o54_A 225 KLQELPFIRIEVWES 239 (277)
T ss_dssp HHHHSSEEEEEEECC
T ss_pred HHHHCCCceeEEEEE
Confidence 677788877665543
No 149
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.15 E-value=1e-10 Score=104.00 Aligned_cols=109 Identities=20% Similarity=0.187 Sum_probs=83.7
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh--CCCCeEEEeeh-hhHHHhCCCC---C-------C------------
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSR--YPCIKGISFDL-PHVLANAPSF---P-------G------------ 251 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-p~~~~~a~~~---~-------r------------ 251 (370)
.++..+. ..+..+|||+|||+|.++..+++. ++..+++++|+ +.+++.++.. . +
T Consensus 42 ~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 42 RALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG 120 (250)
T ss_dssp HHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence 3444333 235679999999999999999998 77889999998 8888877632 2 2
Q ss_pred -------------Ce-------------EEeccCCCCC------CC-C-CEEEecccccCCCh-------hHHHHHHHHH
Q 017495 252 -------------VE-------------HVGGDMFENV------PR-G-DAIFLKWMLHGWTD-------EHCLKLLKNC 290 (370)
Q Consensus 252 -------------v~-------------~~~~D~~~~~------p~-~-D~i~~~~vLh~~~d-------~~~~~iL~~~ 290 (370)
++ +..+|+.+.. +. . |+|+++..+++..+ +....+++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 66 9999998844 33 3 99999876655432 5567999999
Q ss_pred HHhCCCCcEEEEEeec
Q 017495 291 WEALPENGKVIIVESI 306 (370)
Q Consensus 291 ~~~L~pgG~lli~e~~ 306 (370)
+++|+|||+|+++...
T Consensus 201 ~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 201 ASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHSCTTCEEEEEESS
T ss_pred HHhcCCCcEEEEeCcc
Confidence 9999999999995543
No 150
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.14 E-value=2.4e-11 Score=107.99 Aligned_cols=121 Identities=12% Similarity=0.020 Sum_probs=93.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCC----CC-CEEEec
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVP----RG-DAIFLK 272 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p----~~-D~i~~~ 272 (370)
.+..+|||||||+|..+..++..+|+.+++++|. +.+++.+++. .+|+++.+|+.+ +.. .. |+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4678999999999999999999999999999998 8888776642 469999999876 321 23 999987
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
.+- +...+++.+.+.|+|||++++....... ....++.+.++..||.
T Consensus 159 a~~------~~~~ll~~~~~~LkpgG~l~~~~g~~~~---------------------------~e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 159 AVA------PLCVLSELLLPFLEVGGAAVAMKGPRVE---------------------------EELAPLPPALERLGGR 205 (249)
T ss_dssp SSC------CHHHHHHHHGGGEEEEEEEEEEECSCCH---------------------------HHHTTHHHHHHHHTEE
T ss_pred CcC------CHHHHHHHHHHHcCCCeEEEEEeCCCcH---------------------------HHHHHHHHHHHHcCCe
Confidence 542 2357899999999999999986532110 0123567778888999
Q ss_pred cceEEec
Q 017495 353 GLEIVCC 359 (370)
Q Consensus 353 ~v~~~~~ 359 (370)
..++.+.
T Consensus 206 ~~~~~~~ 212 (249)
T 3g89_A 206 LGEVLAL 212 (249)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9887765
No 151
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.13 E-value=1.6e-10 Score=98.07 Aligned_cols=101 Identities=11% Similarity=-0.075 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCC---CC-CC-CEEEecc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFEN---VP-RG-DAIFLKW 273 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~---~p-~~-D~i~~~~ 273 (370)
.+..+|||+|||+|.++..++.. +..+++++|. +.+++.++++ ++++++.+|+.+. .+ .. |+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35689999999999999987774 5668999998 8888877653 4799999998762 22 33 9999988
Q ss_pred cccCCChhHHHHHHHHHHH--hCCCCcEEEEEeecCC
Q 017495 274 MLHGWTDEHCLKLLKNCWE--ALPENGKVIIVESILP 308 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~--~L~pgG~lli~e~~~~ 308 (370)
.+|+. .++...+++.+.+ +|+|||++++......
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATTC 157 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence 86653 3567899999999 9999999999776543
No 152
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.13 E-value=4.8e-11 Score=111.40 Aligned_cols=107 Identities=19% Similarity=0.142 Sum_probs=84.8
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCCeEEeccCCC-CCCCC-
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHVGGDMFE-NVPRG- 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~- 266 (370)
..+...+. ..+..+|||||||+|.++..+++. +..+++++|...+++.+++. ++++++.+|+.+ +.++.
T Consensus 40 ~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~ 117 (348)
T 2y1w_A 40 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 117 (348)
T ss_dssp HHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence 34555554 456789999999999999998885 56699999984465554431 579999999988 55555
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
|+|++..+++++..+.....+.++++.|+|||.+++..
T Consensus 118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 118 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp EEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred eEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 99999999998877777788899999999999998643
No 153
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.13 E-value=2.4e-10 Score=99.14 Aligned_cols=117 Identities=12% Similarity=0.074 Sum_probs=94.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC---CCEEEeccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR---GDAIFLKWM 274 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~---~D~i~~~~v 274 (370)
++..+|+|||||+|.++..+++..|..+++++|. +..++.++++ ++|+++.+|.++..+. .|+|++..+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 3567999999999999999999999999999998 8888877652 5799999999885552 499988765
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGL 354 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v 354 (370)
- .+-...+|..+.+.|+|+|+|++.-. . ..+.++++|.+.||.++
T Consensus 94 G----g~~i~~Il~~~~~~L~~~~~lVlq~~-~------------------------------~~~~vr~~L~~~Gf~i~ 138 (225)
T 3kr9_A 94 G----GRLIARILEEGLGKLANVERLILQPN-N------------------------------REDDLRIWLQDHGFQIV 138 (225)
T ss_dssp C----HHHHHHHHHHTGGGCTTCCEEEEEES-S------------------------------CHHHHHHHHHHTTEEEE
T ss_pred C----hHHHHHHHHHHHHHhCCCCEEEEECC-C------------------------------CHHHHHHHHHHCCCEEE
Confidence 3 34467999999999999999887221 0 24578899999999988
Q ss_pred eEE
Q 017495 355 EIV 357 (370)
Q Consensus 355 ~~~ 357 (370)
+-.
T Consensus 139 ~e~ 141 (225)
T 3kr9_A 139 AES 141 (225)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 154
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.13 E-value=1.4e-10 Score=104.84 Aligned_cols=121 Identities=12% Similarity=0.092 Sum_probs=92.9
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC-C-CEEEeccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR-G-DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~-~-D~i~~~~v 274 (370)
.++..+|||+|||+|.++..+++..+. +++++|. |.+++.++++ ++++++.+|+.+..+. . |+|++...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence 345789999999999999999998776 8999998 8888876542 4589999999883333 3 99988533
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGL 354 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v 354 (370)
. ....+++.+.++|+|||++++.+...... ......+++.+.++++||+..
T Consensus 202 ~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~G~~~~ 252 (278)
T 2frn_A 202 V------RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp S------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred h------hHHHHHHHHHHHCCCCeEEEEEEeecccc-----------------------ccccHHHHHHHHHHHcCCeeE
Confidence 1 22578999999999999999988754210 001235778899999999876
Q ss_pred e
Q 017495 355 E 355 (370)
Q Consensus 355 ~ 355 (370)
.
T Consensus 253 ~ 253 (278)
T 2frn_A 253 K 253 (278)
T ss_dssp E
T ss_pred E
Confidence 6
No 155
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.13 E-value=1.2e-10 Score=102.59 Aligned_cols=100 Identities=15% Similarity=0.236 Sum_probs=73.9
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC------------CCCCCeEEeccCCC--C--CCCC--
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP------------SFPGVEHVGGDMFE--N--VPRG-- 266 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~------------~~~rv~~~~~D~~~--~--~p~~-- 266 (370)
.+..+|||||||+|.++..+++.+|+..++++|+ +.+++.++ ...+++++.+|+.+ + ++.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 3567999999999999999999999999999998 77776442 23579999999986 2 4444
Q ss_pred CEEEecccccCCChhH------HHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 DAIFLKWMLHGWTDEH------CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~------~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|.|++...-.+..... ...+|+.++++|+|||.|++...
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 8887643322111000 03799999999999999998643
No 156
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.12 E-value=8.9e-11 Score=101.30 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=80.1
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC-C-C-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP-R-G- 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p-~-~- 266 (370)
.++..+. ..+..+|||||||+|.++..+++. ..+++++|. +.+++.+++. .+++++.+|+.+..+ . .
T Consensus 68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 3444454 667889999999999999999998 678999998 8888776542 479999999987332 2 3
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|+|++..++|++++ .+.+.|+|||+|++.-..
T Consensus 145 D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred cEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 99999999999885 478999999999997654
No 157
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.12 E-value=6.6e-11 Score=104.69 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=77.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC--C------CCC-CE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN--V------PRG-DA 268 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~--~------p~~-D~ 268 (370)
++.+|||||||+|..+..+++.+| +.+++++|. +.+++.++++ ++|+++.+|+.+. . ... |+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 467999999999999999999986 789999998 8777766542 5899999998762 1 233 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
|++... ..+...+|+.+.++|+|||.|++.+....
T Consensus 140 V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~ 174 (242)
T 3r3h_A 140 IFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWD 174 (242)
T ss_dssp EEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred EEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence 988654 23456789999999999999999776553
No 158
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.12 E-value=3.4e-11 Score=106.03 Aligned_cols=101 Identities=20% Similarity=0.220 Sum_probs=81.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC--
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR-- 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~-- 265 (370)
...++..+. ..+..+|||||||+|.++..+++..+ .+++++|. +.+++.+++. .++++..+|+..+++.
T Consensus 80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 445555555 67788999999999999999999988 88999997 8887776542 4689999998545543
Q ss_pred -CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 266 -GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 266 -~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.|+|++..+++++++ ++.+.|+|||++++...
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence 299999999998774 57889999999999664
No 159
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.12 E-value=1e-10 Score=101.33 Aligned_cols=100 Identities=14% Similarity=0.124 Sum_probs=81.1
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC-C-C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP-R-G 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p-~-~ 266 (370)
.++..+. ..+..+|||||||+|.++..+++.. |..+++++|. +.+++.+++. .++++..+|+....+ . .
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 4444444 6677899999999999999999987 6689999998 8888777642 468999999866444 2 3
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|+|++..++|++++ ++.+.|+|||++++...
T Consensus 147 fD~v~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 147 YDRIYTTAAGPKIPE--------PLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp EEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEES
T ss_pred eeEEEECCchHHHHH--------HHHHHcCCCcEEEEEEC
Confidence 99999999998773 67899999999999764
No 160
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.11 E-value=1.3e-10 Score=103.23 Aligned_cols=98 Identities=13% Similarity=0.098 Sum_probs=78.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC---CCCC--C-CEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE---NVPR--G-DAI 269 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~---~~p~--~-D~i 269 (370)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++|+++.+|+.+ ..+. . |+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 34578999999999999999999998 889999998 8888776542 479999999865 2222 3 999
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
++... ......+|+++.++|+|||+|++.+...
T Consensus 141 ~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 141 FIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp EECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred EECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 98543 3345689999999999999998866543
No 161
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.10 E-value=3.6e-10 Score=98.26 Aligned_cols=129 Identities=11% Similarity=0.013 Sum_probs=100.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC---CCEEEeccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR---GDAIFLKWM 274 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~---~D~i~~~~v 274 (370)
++..+|+|||||+|.++..+++..|..+++++|. +..++.++++ ++|+++.+|.++..+. .|+|++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 4568999999999999999999988889999998 8888887652 5799999999984432 399988766
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGL 354 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v 354 (370)
. .+-...+|....+.|+++|+|++.-. ...+.++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~l~~~~~lIlqp~-------------------------------~~~~~lr~~L~~~Gf~i~ 144 (230)
T 3lec_A 100 G----GRLIADILNNDIDKLQHVKTLVLQPN-------------------------------NREDDLRKWLAANDFEIV 144 (230)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEES-------------------------------SCHHHHHHHHHHTTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCcCCEEEEECC-------------------------------CChHHHHHHHHHCCCEEE
Confidence 4 34567899999999999999887331 025678999999999988
Q ss_pred eEEec---CCCeeEEEEe
Q 017495 355 EIVCC---AYNSWVMEFH 369 (370)
Q Consensus 355 ~~~~~---~~~~~~~e~~ 369 (370)
+-.-+ +....+|.+.
T Consensus 145 ~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 145 AEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEC--CEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 75432 2344455543
No 162
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.10 E-value=2.1e-10 Score=106.69 Aligned_cols=101 Identities=23% Similarity=0.263 Sum_probs=77.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCCeEEeccCCC-CCCC-C-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHVGGDMFE-NVPR-G- 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv~~~~~D~~~-~~p~-~- 266 (370)
.+...+. ..+..+|||||||+|.++..+++. +..+++++|...+++.+++. ++++++.+|+.+ +.+. .
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 3444443 566789999999999999999886 45689999984477666542 579999999988 6663 3
Q ss_pred CEEEecc---cccCCChhHHHHHHHHHHHhCCCCcEEE
Q 017495 267 DAIFLKW---MLHGWTDEHCLKLLKNCWEALPENGKVI 301 (370)
Q Consensus 267 D~i~~~~---vLh~~~d~~~~~iL~~~~~~L~pgG~ll 301 (370)
|+|++.. .+++ ......+|+.+.++|+|||+++
T Consensus 133 D~Ivs~~~~~~l~~--~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 133 DVIISEWMGYFLLF--ESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEECCCBTTBTT--TCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCchhhccC--HHHHHHHHHHHHhhcCCCcEEE
Confidence 9999876 3444 3355789999999999999998
No 163
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.09 E-value=6.9e-11 Score=103.02 Aligned_cols=98 Identities=14% Similarity=0.229 Sum_probs=77.9
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC---CCC-----CC-C
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE---NVP-----RG-D 267 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~---~~p-----~~-D 267 (370)
.++.+|||||||+|..+..+++.++ +.+++++|+ +.+++.++++ ++++++.+|+.+ ..+ .. |
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 3568999999999999999999875 789999998 8888877652 469999999754 222 23 9
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+|++....+++.+ ...++..+ ++|+|||.|++.+..
T Consensus 137 ~V~~d~~~~~~~~--~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKDRYLP--DTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EEEECSCGGGHHH--HHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEcCCcccchH--HHHHHHhc-cccCCCeEEEEeCCC
Confidence 9999887776542 34677777 999999999886554
No 164
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.09 E-value=6.8e-11 Score=101.73 Aligned_cols=91 Identities=15% Similarity=0.128 Sum_probs=74.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC-C-CEEEecccccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR-G-DAIFLKWMLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~-~-D~i~~~~vLh~ 277 (370)
+..+|||||||+|..+..++..+|+.+++++|. +.+++.+++. .++++..+|+.+..+. . |+|++..+ +
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~- 142 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C-
Confidence 367999999999999999999999999999998 8887766542 3599999999874333 3 99997543 2
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
+...+++.++++|+|||++++.
T Consensus 143 ----~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 143 ----SLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ----SHHHHHHHHTTSEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHhcCCCcEEEEE
Confidence 2358999999999999999986
No 165
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.08 E-value=2.9e-10 Score=100.15 Aligned_cols=94 Identities=18% Similarity=0.157 Sum_probs=76.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhh----CCCCeEEEeeh-hhHHHhCCC-CCCCeEEeccCCCC--C---CC--CCEEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSR----YPCIKGISFDL-PHVLANAPS-FPGVEHVGGDMFEN--V---PR--GDAIFLKW 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~D~~~~--~---p~--~D~i~~~~ 273 (370)
++.+|||||||+|..+..+++. .|+.+++++|+ +.+++.++. ..+|+++.+|+.+. . .. .|+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 3579999999999999999987 68899999998 888777754 26799999999873 2 22 39998765
Q ss_pred cccCCChhHHHHHHHHHHH-hCCCCcEEEEEee
Q 017495 274 MLHGWTDEHCLKLLKNCWE-ALPENGKVIIVES 305 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~-~L~pgG~lli~e~ 305 (370)
. |. +...+|+.+.+ .|+|||+|++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 4 42 34678999997 9999999999665
No 166
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.08 E-value=6.5e-11 Score=104.05 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCC----CC-CEEEec
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVP----RG-DAIFLK 272 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p----~~-D~i~~~ 272 (370)
.+..+|||||||+|..+..+++.+|+.+++++|. +.+++.+++. ++++++.+|+.+..+ .. |+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 3578999999999999999999889999999998 8888877642 489999999987433 33 999976
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
... .....+++.+.+.|+|||+|++.+...
T Consensus 150 ~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 150 AAK-----AQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp TTS-----SSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred CcH-----HHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 432 235679999999999999998855443
No 167
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.08 E-value=1.4e-10 Score=105.74 Aligned_cols=98 Identities=15% Similarity=0.242 Sum_probs=78.4
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC---CCCC-C-CEEEecccc
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE---NVPR-G-DAIFLKWML 275 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~---~~p~-~-D~i~~~~vL 275 (370)
+.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ +|++++.+|..+ ..+. . |+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 45999999999999999999999999999999 9998877642 589999999876 2333 3 999986544
Q ss_pred cCCChhHH--HHHHHHHHHhCCCCcEEEEEee
Q 017495 276 HGWTDEHC--LKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 276 h~~~d~~~--~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+....... ..+++.++++|+|||.|++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 43222221 5899999999999999998664
No 168
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.06 E-value=5e-10 Score=98.12 Aligned_cols=117 Identities=11% Similarity=0.072 Sum_probs=94.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCC-C--CCEEEeccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVP-R--GDAIFLKWM 274 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p-~--~D~i~~~~v 274 (370)
++..+|||||||+|.++..+++..|..+++++|. +..++.++++ ++|+++.+|.++..+ . .|+|++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 4568999999999999999999988889999998 8888887653 579999999998443 2 499988665
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGL 354 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v 354 (370)
. .+-...+|....+.|+++++|++.-.. ..+.++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~L~~~~~lIlq~~~-------------------------------~~~~lr~~L~~~Gf~i~ 144 (244)
T 3gnl_A 100 G----GTLIRTILEEGAAKLAGVTKLILQPNI-------------------------------AAWQLREWSEQNNWLIT 144 (244)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHHHHHHHHHTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCCCCEEEEEcCC-------------------------------ChHHHHHHHHHCCCEEE
Confidence 4 345678999999999999999884310 25678899999999986
Q ss_pred eEE
Q 017495 355 EIV 357 (370)
Q Consensus 355 ~~~ 357 (370)
+-.
T Consensus 145 ~E~ 147 (244)
T 3gnl_A 145 SEA 147 (244)
T ss_dssp EEE
T ss_pred EEE
Confidence 533
No 169
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.06 E-value=2.2e-10 Score=104.09 Aligned_cols=99 Identities=18% Similarity=0.144 Sum_probs=74.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-----------CCCCeEEeccCCCCC--CC-C-CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-----------FPGVEHVGGDMFENV--PR-G-DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~D~~~~~--p~-~-D~i 269 (370)
+++.+|||||||+|..+..+++..+..+++++|+ +.+++.+++ .++++++.+|..+.. +. . |+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 4578999999999999999999877889999998 888887653 258999999998732 22 3 999
Q ss_pred EecccccCCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 017495 270 FLKWMLHGWTDEHC--LKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 270 ~~~~vLh~~~d~~~--~~iL~~~~~~L~pgG~lli~e 304 (370)
++....+..+.... ..+++.++++|+|||+|++..
T Consensus 162 i~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 198 (294)
T 3adn_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EECC----------CCHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEec
Confidence 99655433232222 579999999999999999864
No 170
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.06 E-value=2.3e-10 Score=100.15 Aligned_cols=101 Identities=18% Similarity=0.203 Sum_probs=80.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----CCCeEEeccCCCCCC--CC-
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----PGVEHVGGDMFENVP--RG- 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~~~p--~~- 266 (370)
...++..+. ..+..+|||||||+|.++..+++.. .+++++|. +.+++.+++. .+++++.+|+.+..+ ..
T Consensus 59 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f 135 (231)
T 1vbf_A 59 GIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY 135 (231)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence 334555554 6677899999999999999999986 68999998 8888776542 279999999987333 23
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|+|++..++|++++ .+.+.|+|||++++....
T Consensus 136 D~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 136 DRVVVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEEEESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred cEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 99999999999874 478899999999998653
No 171
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.05 E-value=1.3e-10 Score=108.29 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=79.2
Q ss_pred HHHHHhhcCCCCCCeEEEEcCc------ccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCC--
Q 017495 196 NKILDVYRGFDGLKVLVDVGGG------IGVTLGMITSR-YPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVP-- 264 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G------~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p-- 264 (370)
..++..+. .++.+||||||| +|..+..++++ +|+.+++++|+ +.+.. ...+++++.+|+.+ +++
T Consensus 207 e~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---~~~rI~fv~GDa~dlpf~~~ 281 (419)
T 3sso_A 207 DRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---DELRIRTIQGDQNDAEFLDR 281 (419)
T ss_dssp HHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---CBTTEEEEECCTTCHHHHHH
T ss_pred HHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---cCCCcEEEEecccccchhhh
Confidence 34444442 356899999999 77777777766 59999999998 66632 34689999999987 444
Q ss_pred -----CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 265 -----RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 265 -----~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.. |+|++. ..|++. +....|++++++|||||++++.|...
T Consensus 282 l~~~d~sFDlVisd-gsH~~~--d~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 282 IARRYGPFDIVIDD-GSHINA--HVRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp HHHHHCCEEEEEEC-SCCCHH--HHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred hhcccCCccEEEEC-Ccccch--hHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 23 999886 456543 45789999999999999999988763
No 172
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.05 E-value=1.5e-10 Score=107.52 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=78.2
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCC-----------------CCCCeEEe
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPS-----------------FPGVEHVG 256 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~-----------------~~rv~~~~ 256 (370)
..++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ ..+++++.
T Consensus 95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 34455554 667889999999999999999998 57789999998 877776653 14799999
Q ss_pred ccCCCC---CCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 257 GDMFEN---VPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 257 ~D~~~~---~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+|+.+. .+.+ |+|++... ++ ..+++.+.++|+|||+|++....
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~~-----~~--~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDML-----NP--HVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp SCTTCCC-------EEEEEECSS-----ST--TTTHHHHGGGEEEEEEEEEEESS
T ss_pred CChHHcccccCCCCeeEEEECCC-----CH--HHHHHHHHHhcCCCcEEEEEeCC
Confidence 999873 3433 99988432 22 23789999999999999987754
No 173
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.04 E-value=1.6e-10 Score=107.77 Aligned_cols=96 Identities=22% Similarity=0.230 Sum_probs=75.8
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCCeEEeccCCC-CCCCC--CEEEecccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHVGGDMFE-NVPRG--DAIFLKWML 275 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~--D~i~~~~vL 275 (370)
.+..+|||||||+|.++..+++. +..+++++|...+++.+++. ++++++.+|+.+ +.|.. |+|++..+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 45789999999999999999987 66799999985566665532 469999999998 66643 999987654
Q ss_pred cCC-ChhHHHHHHHHHHHhCCCCcEEEE
Q 017495 276 HGW-TDEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 276 h~~-~d~~~~~iL~~~~~~L~pgG~lli 302 (370)
+++ ..+....+|+.+.++|+|||+++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 443 223456899999999999999874
No 174
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.04 E-value=5.6e-10 Score=100.10 Aligned_cols=93 Identities=18% Similarity=0.183 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCC-CCCCC--CEEEecccccCCCh
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTD 280 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d 280 (370)
.+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++. .++.+..+|+.+ +.+.+ |+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 4568999999999999999999988899999998 8888777653 578999999887 55543 999986553
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 281 EHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 281 ~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
..+++++++|+|||++++..+..
T Consensus 159 ----~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEEEEEEEEEEECT
T ss_pred ----hhHHHHHHhcCCCcEEEEEEcCH
Confidence 24889999999999999988754
No 175
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.04 E-value=2.7e-10 Score=101.89 Aligned_cols=100 Identities=12% Similarity=0.164 Sum_probs=76.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------CCCeEEeccCCCC--------CCC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----------PGVEHVGGDMFEN--------VPR 265 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~D~~~~--------~p~ 265 (370)
..+..+|||+|||+|.++..+++++|..+++++|+ +.+++.++++ ++++++.+|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45678999999999999999999999999999998 8877765431 2589999999874 233
Q ss_pred -C-CEEEeccccc----------------CCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 266 -G-DAIFLKWMLH----------------GWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 266 -~-D~i~~~~vLh----------------~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
. |+|+++--.+ |........+++.+.+.|+|||+++++.
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3 9999962221 1222235689999999999999999853
No 176
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.04 E-value=6.3e-10 Score=104.77 Aligned_cols=97 Identities=12% Similarity=0.068 Sum_probs=80.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCC-CC-CC-CEEEecccccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFEN-VP-RG-DAIFLKWMLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~-~p-~~-D~i~~~~vLh~ 277 (370)
+..+|||+|||+|.++..+++. +.+++++|. +.+++.++++ .+++++.+|+.+. .+ .. |+|++...+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999987 569999998 8888877653 2589999999983 33 23 99999999887
Q ss_pred ---CChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 278 ---WTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 278 ---~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
...+....+++++++.|+|||+++++..
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 3345678999999999999999999753
No 177
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=99.04 E-value=1.6e-10 Score=101.14 Aligned_cols=131 Identities=10% Similarity=-0.030 Sum_probs=99.1
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCC-C-CEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPR-G-DAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~-~-D~i~~~~vLh~ 277 (370)
..+.+|||||||.|-++..+....|..+++++|+ +.+++.++++ .+.++...|+....|. . |++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999998 8888877653 3578999999884443 3 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEI 356 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~ 356 (370)
+.++.....+ ++..+|+|+|.++..+.-.=.++. ..++- .-...|++.+.+.|..+.++
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs--------~gm~~-----------~Y~~~~e~~~~~~g~~~~~~ 269 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRS--------KGMFQ-----------NYSQSFESQARERSCRIQRL 269 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEECC---------------CHHH-----------HHHHHHHHHHHHHTCCEEEE
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCC--------cchhh-----------HHHHHHHHHHHhcCCceeee
Confidence 9887666777 899999999988877662111110 01111 12567899999999854433
No 178
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.03 E-value=1.4e-10 Score=101.80 Aligned_cols=97 Identities=12% Similarity=0.156 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCC-----CCC-CEEEe
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENV-----PRG-DAIFL 271 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~-----p~~-D~i~~ 271 (370)
.+..+|||||||+|..+..+++.+|+.+++++|. +.+++.+++. ++++++.+|+.+.. +.. |+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 3567999999999999999999999999999998 8888776542 47999999987621 233 99999
Q ss_pred cccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 272 KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
....+ +...+|+.+.+.|+|||+|++.+...
T Consensus 133 ~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 133 DAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp EGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred CCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 77764 34688999999999999999976543
No 179
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.03 E-value=3.2e-10 Score=104.46 Aligned_cols=102 Identities=21% Similarity=0.275 Sum_probs=81.6
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC-C-
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP-R- 265 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p-~- 265 (370)
..++..+. ..+..+|||||||+|.++..+++..+ +.+++++|+ +.+++.+++. .+++++.+|+.+..+ .
T Consensus 65 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 34455554 66778999999999999999999887 478999998 8888776542 459999999987332 2
Q ss_pred C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 266 G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
. |+|++..++|+++ +.+.+.|||||++++....
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 3 9999999999877 3578899999999997543
No 180
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.03 E-value=1.9e-10 Score=101.97 Aligned_cols=95 Identities=19% Similarity=0.338 Sum_probs=72.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC--------------CCCCCeEEeccCCCC----CCC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP--------------SFPGVEHVGGDMFEN----VPR 265 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~--------------~~~rv~~~~~D~~~~----~p~ 265 (370)
.++..+|||||||+|.++..+++.+|+..++++|. +.+++.++ ...+++++.+|+.+. ++.
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 34567999999999999999999999999999998 77776542 225799999999863 333
Q ss_pred C--CEEEecccccCCChhHH-----------HHHHHHHHHhCCCCcEEEEEe
Q 017495 266 G--DAIFLKWMLHGWTDEHC-----------LKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 266 ~--D~i~~~~vLh~~~d~~~-----------~~iL~~~~~~L~pgG~lli~e 304 (370)
+ |.|++. ++++.. ..+|+.+.++|+|||.|++..
T Consensus 127 ~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 127 GQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp TCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 3 666532 233311 379999999999999999953
No 181
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.03 E-value=2.5e-10 Score=107.66 Aligned_cols=102 Identities=18% Similarity=0.159 Sum_probs=79.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCCeEEeccCCC-CCCCC-CEEEecccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHVGGDMFE-NVPRG-DAIFLKWML 275 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~-D~i~~~~vL 275 (370)
..+..+|||||||+|.++..+++. ...+++++|...+++.+++. ++++++.+|+.+ +.+.. |+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 557789999999999999999987 33489999986666655432 569999999987 55544 999997766
Q ss_pred cCCCh-hHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 276 HGWTD-EHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 276 h~~~d-~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
|.... .....+++.+.+.|+|||.+++.+...
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~~ 172 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPSHARM 172 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESSEEEE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEecCeE
Confidence 66543 235689999999999999998866543
No 182
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.03 E-value=8.1e-11 Score=102.70 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=77.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---CC-----CC-CE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---VP-----RG-DA 268 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~p-----~~-D~ 268 (370)
+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+. .+ .. |+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 567999999999999999999988 789999998 8887776542 4699999998652 11 33 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
|++... ..+...+++.+.++|+|||+|++.+...
T Consensus 144 v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 144 IYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp EEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred EEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 986543 3345689999999999999999877654
No 183
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.02 E-value=4.2e-10 Score=99.20 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=77.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---C----------
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---V---------- 263 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~---------- 263 (370)
.+..+|||||||+|..+..+++.+| ..+++++|. +.+++.+++. ++++++.+|+.+. .
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 4567999999999999999999987 689999998 8887776542 3589999997652 1
Q ss_pred -----C-CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 264 -----P-RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 264 -----p-~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
+ .. |+|++.... +....+|+++.+.|+|||+|++.+...
T Consensus 139 ~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp TTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred ccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 1 33 999987543 345688999999999999999876443
No 184
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.02 E-value=6e-10 Score=94.79 Aligned_cols=106 Identities=21% Similarity=0.288 Sum_probs=76.8
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCCCeEEeccCCCCC----------
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFENV---------- 263 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~~---------- 263 (370)
.+.++...+.-+++..+|||+|||+|.++..++++ ..+++++|+..+ ....+++++.+|+.+..
T Consensus 12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~ 85 (191)
T 3dou_A 12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALR 85 (191)
T ss_dssp HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhh
Confidence 34566666653567789999999999999999987 778999998332 22357999999998731
Q ss_pred ----CCCCEEEecccccC---CC-h-----hHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 264 ----PRGDAIFLKWMLHG---WT-D-----EHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 264 ----p~~D~i~~~~vLh~---~~-d-----~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
...|+|++...... +. + +.+..+|+.+.++|+|||.|++..+
T Consensus 86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 22399998542211 00 1 1245789999999999999997554
No 185
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=99.01 E-value=1.1e-09 Score=93.22 Aligned_cols=105 Identities=17% Similarity=0.200 Sum_probs=76.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCC---------CeEEEeehhhHHHhCCCCCCCeEE-eccCCC-C---
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPC---------IKGISFDLPHVLANAPSFPGVEHV-GGDMFE-N--- 262 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~---------~~~~~~D~p~~~~~a~~~~rv~~~-~~D~~~-~--- 262 (370)
++...+..+.+..+|||||||+|.++..+++.++. .+++++|+..+ ....+++++ .+|+.. +
T Consensus 12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTSHHHHH
T ss_pred HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCCHHHHH
Confidence 44444443567789999999999999999999865 78999998432 123568899 999876 2
Q ss_pred -----CCC-C-CEEEecccccC----CChhH-----HHHHHHHHHHhCCCCcEEEEEee
Q 017495 263 -----VPR-G-DAIFLKWMLHG----WTDEH-----CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 263 -----~p~-~-D~i~~~~vLh~----~~d~~-----~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.+. . |+|++...+|. ..+.. ...+|+.+.++|+|||+|++..+
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 222 3 99998654442 12221 14789999999999999998765
No 186
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.01 E-value=7.2e-10 Score=96.56 Aligned_cols=95 Identities=12% Similarity=0.156 Sum_probs=75.1
Q ss_pred CCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCC---CC-CCC-CEEEec
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFE---NV-PRG-DAIFLK 272 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~---~~-p~~-D~i~~~ 272 (370)
..+|||||||+|..+..+++.+| +.+++++|. +.+++.++++ ++++++.+|+.+ .. +.. |+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34999999999999999999875 789999998 8888776542 479999999876 23 233 999886
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
... .+...+++.+.+.|+|||.|++.+...
T Consensus 137 ~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSP-----MDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp CCT-----TTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred CcH-----HHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 433 234578999999999999999855543
No 187
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.00 E-value=3.1e-10 Score=95.08 Aligned_cols=108 Identities=13% Similarity=0.019 Sum_probs=79.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---CCC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---VPR 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~p~ 265 (370)
.+...+....+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+. .+.
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG 99 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence 33333432346789999999999999999887 6679999998 8888776542 3689999998762 223
Q ss_pred C-CEEEecccccCCChhHHHHHHHHHH--HhCCCCcEEEEEeecCC
Q 017495 266 G-DAIFLKWMLHGWTDEHCLKLLKNCW--EALPENGKVIIVESILP 308 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~~~~~iL~~~~--~~L~pgG~lli~e~~~~ 308 (370)
. |+|++...+|. .....+++.+. ++|+|||.+++......
T Consensus 100 ~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 100 RFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp CEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 3 99999766542 33456777776 99999999999776543
No 188
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.00 E-value=1.1e-09 Score=98.89 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=81.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCC---------CCCCeEEeccCCC-C
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPS---------FPGVEHVGGDMFE-N 262 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~---------~~rv~~~~~D~~~-~ 262 (370)
...++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.+ +
T Consensus 88 ~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 88 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 345555555 677889999999999999999986 57889999998 887776543 2479999999987 4
Q ss_pred CCC-C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 263 VPR-G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 263 ~p~-~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
.+. . |+|++. .+++ ..+|+++.++|+|||++++..+.
T Consensus 167 ~~~~~~D~v~~~-----~~~~--~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 167 LPDGSVDRAVLD-----MLAP--WEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CCTTCEEEEEEE-----SSCG--GGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCCceeEEEEC-----CcCH--HHHHHHHHHhCCCCCEEEEEeCC
Confidence 443 3 999872 2333 37899999999999999997753
No 189
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.00 E-value=8.5e-10 Score=99.86 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=74.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCC-CC---CEEEec--
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVP-RG---DAIFLK-- 272 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p-~~---D~i~~~-- 272 (370)
+..+|||+|||+|.++..+++. |+.+++++|+ +.+++.++++ ++++++.+|+++..+ .. |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4579999999999999999999 9999999998 8888877642 369999999988443 45 999996
Q ss_pred ----------ccccCCChh------HHHHHHHHHH-HhCCCCcEEEE
Q 017495 273 ----------WMLHGWTDE------HCLKLLKNCW-EALPENGKVII 302 (370)
Q Consensus 273 ----------~vLh~~~d~------~~~~iL~~~~-~~L~pgG~lli 302 (370)
.+. |.+.. +...+++++. +.|+|||+|++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 333 22221 1127899999 99999999997
No 190
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=98.99 E-value=2.3e-09 Score=96.97 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=72.1
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh--hhHHHhCCCC----------------CCCeEEeccCCCC---C
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL--PHVLANAPSF----------------PGVEHVGGDMFEN---V 263 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--p~~~~~a~~~----------------~rv~~~~~D~~~~---~ 263 (370)
..+..+|||||||+|.++..+++. ...+++++|+ +.+++.++++ +++++...|..+. .
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 345679999999999999988875 3348999998 5666654321 2688886665431 1
Q ss_pred -----CCC-CEEEecccccCCChhHHHHHHHHHHHhCC---C--CcEEEEE
Q 017495 264 -----PRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALP---E--NGKVIIV 303 (370)
Q Consensus 264 -----p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~---p--gG~lli~ 303 (370)
+.. |+|++..++|+.+ +...+++.+.++|+ | ||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~--~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQ--AHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGG--GHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccChH--HHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 233 9999999999844 45789999999999 9 9998774
No 191
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=98.97 E-value=2.6e-10 Score=98.45 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=76.4
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC--CCCC-CCEEEeccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE--NVPR-GDAIFLKWM 274 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~--~~p~-~D~i~~~~v 274 (370)
+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|..+ +... .|+|++...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 135 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD 135 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence 467999999999999999999988 789999998 8888877642 469999999865 2222 488887632
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
..+...+++++.++|+|||.|++.+...
T Consensus 136 -----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 136 -----VFNGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp -----TSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred -----hhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence 2234689999999999999999866544
No 192
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=98.97 E-value=3.7e-10 Score=95.32 Aligned_cols=107 Identities=13% Similarity=0.003 Sum_probs=78.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCC-----
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENV----- 263 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~----- 263 (370)
.+.+.+....+..+|||+|||+|.++..+++ .+..+++++|. +.+++.+++. ++++++.+|+.+..
T Consensus 34 ~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (187)
T 2fhp_A 34 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE 112 (187)
T ss_dssp HHHHHHCSCCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh
Confidence 3334443244678999999999999998887 45679999998 8888877642 46899999987621
Q ss_pred -CCC-CEEEecccccCCChhHHHHHHHHH--HHhCCCCcEEEEEeecC
Q 017495 264 -PRG-DAIFLKWMLHGWTDEHCLKLLKNC--WEALPENGKVIIVESIL 307 (370)
Q Consensus 264 -p~~-D~i~~~~vLh~~~d~~~~~iL~~~--~~~L~pgG~lli~e~~~ 307 (370)
+.. |+|++...++.... ..+++.+ .++|+|||.+++.....
T Consensus 113 ~~~~fD~i~~~~~~~~~~~---~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 113 EKLQFDLVLLDPPYAKQEI---VSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp TTCCEEEEEECCCGGGCCH---HHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred cCCCCCEEEECCCCCchhH---HHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 233 99999877653332 3556666 78899999999876544
No 193
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=98.96 E-value=6.9e-10 Score=102.67 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCCeEEeccCCC-CCC-CC-CEEEecccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHVGGDMFE-NVP-RG-DAIFLKWML 275 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv~~~~~D~~~-~~p-~~-D~i~~~~vL 275 (370)
.+..+|||||||+|.++..+++. +..+++++|...+++.+++. ++++++.+|+.+ +.| +. |+|++..+.
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 35679999999999999988886 55689999985566655431 579999999988 566 33 999987554
Q ss_pred cCCC-hhHHHHHHHHHHHhCCCCcEEEE
Q 017495 276 HGWT-DEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 276 h~~~-d~~~~~iL~~~~~~L~pgG~lli 302 (370)
+++. ......+|+.+.+.|+|||+++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 4432 23356889999999999999974
No 194
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=98.94 E-value=5.3e-10 Score=99.13 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=76.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC--C-C------CCC-
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE--N-V------PRG- 266 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~--~-~------p~~- 266 (370)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.++++ ++|+++.+|..+ + . +..
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 3567999999999999999999988 789999998 8887776542 479999999865 2 1 233
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|+|++.... .+...+++.+.++|+|||.|++.+..
T Consensus 158 D~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~ 192 (247)
T 1sui_A 158 DFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_dssp SEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTT
T ss_pred EEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 999986432 24568999999999999999886544
No 195
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=98.94 E-value=3.2e-09 Score=94.92 Aligned_cols=106 Identities=12% Similarity=-0.029 Sum_probs=74.0
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC--C------CCeEE--eccCCCCCCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF--P------GVEHV--GGDMFENVPR 265 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~--~------rv~~~--~~D~~~~~p~ 265 (370)
..+..... +.+..+|||||||+|.++..+++. .+++++|+..+...+++. . ++.++ .+|+.+-.+.
T Consensus 64 ~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~ 139 (265)
T 2oxt_A 64 AWMEERGY-VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVE 139 (265)
T ss_dssp HHHHHHTS-CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHcCC-CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCC
Confidence 34444422 567789999999999999999886 689999983353333221 2 58888 9999872233
Q ss_pred C-CEEEecccccCCChh---H--HHHHHHHHHHhCCCCc--EEEEEeec
Q 017495 266 G-DAIFLKWMLHGWTDE---H--CLKLLKNCWEALPENG--KVIIVESI 306 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~---~--~~~iL~~~~~~L~pgG--~lli~e~~ 306 (370)
. |+|++... ++.... + ...+|+.+.++|+||| .+++-.+.
T Consensus 140 ~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 140 RTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 3 99999766 433221 1 1248999999999999 99985554
No 196
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=98.93 E-value=1.9e-09 Score=99.04 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=78.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CC-CCC-CEEEec-
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NV-PRG-DAIFLK- 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~-p~~-D~i~~~- 272 (370)
..+..+|||+|||+|..+..+++..+ ..+++++|. +.+++.++++ .+++++.+|+.+ +. +.. |+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 56778999999999999999999875 478999998 8777766542 468999999877 32 333 999983
Q ss_pred -----ccccC-------CChhHH-------HHHHHHHHHhCCCCcEEEEEeecC
Q 017495 273 -----WMLHG-------WTDEHC-------LKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 273 -----~vLh~-------~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.++++ |+.++. ..+|+++.+.|||||+|++.....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 23433 222221 589999999999999999976544
No 197
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=98.92 E-value=9.4e-10 Score=96.15 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=76.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC------CCeEEEeeh-hhHHHhCCC-----------CCCCeEEeccCCCCCCC-
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP------CIKGISFDL-PHVLANAPS-----------FPGVEHVGGDMFENVPR- 265 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p------~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~D~~~~~p~- 265 (370)
..+..+|||||||+|.++..+++..+ ..+++++|. +.+++.+++ ..+++++.+|..+.++.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45678999999999999999998765 368999998 888777654 24799999999875543
Q ss_pred C--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 266 G--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 266 ~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+ |+|++...+|++. +.+.+.|+|||+|++.-.
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 3 9999999998865 468899999999998654
No 198
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.92 E-value=3.7e-09 Score=96.48 Aligned_cols=97 Identities=18% Similarity=0.095 Sum_probs=68.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-----hhHHHhCC--CC--CCCeEEec-cCCCCCCC-CCEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-----PHVLANAP--SF--PGVEHVGG-DMFENVPR-GDAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----p~~~~~a~--~~--~rv~~~~~-D~~~~~p~-~D~i~~~~ 273 (370)
+++..+|||||||+|.++..++++ .+++++|. +..++... .. +++.++.+ |+....++ .|+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 556789999999999999999987 46888887 43333222 11 46899999 88763233 39999976
Q ss_pred ccc---CCChhH-HHHHHHHHHHhCCCCcEEEEEe
Q 017495 274 MLH---GWTDEH-CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 274 vLh---~~~d~~-~~~iL~~~~~~L~pgG~lli~e 304 (370)
.++ +..+.. ...+|+.+.++|||||.|++..
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 653 212221 2268999999999999888743
No 199
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=98.91 E-value=3.6e-09 Score=98.93 Aligned_cols=109 Identities=17% Similarity=0.076 Sum_probs=83.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPR 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~ 265 (370)
...++.... +.+..+|||+|||+|.++..++... |+.+++++|+ +.+++.++++ +++++..+|+.+ +.+.
T Consensus 192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 344555444 7788899999999999999999988 8899999998 8888877653 379999999987 4332
Q ss_pred -C-CEEEecccccCC-C-hhH----HHHHHHHHHHhCCCCcEEEEEe
Q 017495 266 -G-DAIFLKWMLHGW-T-DEH----CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 266 -~-D~i~~~~vLh~~-~-d~~----~~~iL~~~~~~L~pgG~lli~e 304 (370)
. |+|++.--.+.. . ..+ ...+++.+.+.|+|||++++..
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 3 999985332211 1 111 2689999999999999999964
No 200
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=98.90 E-value=4.9e-09 Score=92.57 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=79.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCC-CC-C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENV-PR-G 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~-p~-~ 266 (370)
.++..+. ..+..+|||+|||+|.++..+++. ..+++++|. +.+++.+++. +++++..+|+.+.. +. .
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 4455454 667789999999999999999998 679999998 8877766542 57899999998854 43 3
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|+|++. .++. ..+|+++.++|+|||++++..+.
T Consensus 159 ~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 159 FHAAFVD-----VREP--WHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp BSEEEEC-----SSCG--GGGHHHHHHHBCTTCEEEEEESS
T ss_pred ccEEEEC-----CcCH--HHHHHHHHHHcCCCCEEEEEeCC
Confidence 999872 3332 47899999999999999997753
No 201
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.90 E-value=6.6e-10 Score=100.57 Aligned_cols=99 Identities=17% Similarity=0.074 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCCC---CCCC-CEEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFEN---VPRG-DAIF 270 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~~---~p~~-D~i~ 270 (370)
+++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. .+.. |+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999998878889999998 888876543 25799999998762 2333 9999
Q ss_pred ecccccCCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 017495 271 LKWMLHGWTDEHC--LKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 271 ~~~vLh~~~d~~~--~~iL~~~~~~L~pgG~lli~e 304 (370)
+....+..+.... ..+++.++++|+|||.+++..
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 8654443233222 589999999999999999853
No 202
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=98.90 E-value=5.6e-10 Score=92.67 Aligned_cols=96 Identities=11% Similarity=-0.030 Sum_probs=73.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----C-CCeEEeccCCCCCC------CC-CEEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----P-GVEHVGGDMFENVP------RG-DAIFLKW 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~-rv~~~~~D~~~~~p------~~-D~i~~~~ 273 (370)
+..+|||+|||+|.++..+++..+. ++++|. +.+++.++++ . +++++.+|+.+..+ .. |+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5679999999999999999998665 999998 8888877642 1 79999999876211 13 9999987
Q ss_pred cccCCChhHHHHHHHHHH--HhCCCCcEEEEEeecCC
Q 017495 274 MLHGWTDEHCLKLLKNCW--EALPENGKVIIVESILP 308 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~--~~L~pgG~lli~e~~~~ 308 (370)
.+|. ..+ .+++.+. ++|+|||.+++......
T Consensus 119 ~~~~-~~~---~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 119 PYAM-DLA---ALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp CTTS-CTT---HHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred CCch-hHH---HHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 7762 222 4455555 99999999998766543
No 203
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=98.90 E-value=3.8e-09 Score=95.00 Aligned_cols=107 Identities=13% Similarity=-0.033 Sum_probs=74.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC--C------CCeEE--eccCCCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF--P------GVEHV--GGDMFENVP 264 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~--~------rv~~~--~~D~~~~~p 264 (370)
+..+..... +.+..+|||||||+|.++..+++. .+++++|+..+...+++. . ++.++ .+|+.+-.+
T Consensus 71 L~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~ 146 (276)
T 2wa2_A 71 LAWIDERGG-VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEP 146 (276)
T ss_dssp HHHHHHTTS-CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCC
T ss_pred HHHHHHcCC-CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCC
Confidence 344444422 557789999999999999999987 589999983353333221 1 68888 899876213
Q ss_pred CC-CEEEecccccCCChh----H-HHHHHHHHHHhCCCCc--EEEEEeec
Q 017495 265 RG-DAIFLKWMLHGWTDE----H-CLKLLKNCWEALPENG--KVIIVESI 306 (370)
Q Consensus 265 ~~-D~i~~~~vLh~~~d~----~-~~~iL~~~~~~L~pgG--~lli~e~~ 306 (370)
.. |+|++... +..... . ...+|+.+.++|+||| .+++..+.
T Consensus 147 ~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 147 FQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 33 99999776 433221 1 1247999999999999 98885544
No 204
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=98.89 E-value=2.1e-09 Score=93.84 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=76.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-----CCCeEEEeeh-hhHHHhCCC-----------CCCCeEEeccCCCCC----
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-----PCIKGISFDL-PHVLANAPS-----------FPGVEHVGGDMFENV---- 263 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~D~~~~~---- 263 (370)
..+..+|||||||+|.++..+++.. |..+++++|. +.+++.+++ ..+++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 5567899999999999999999986 5779999998 887776654 247999999988743
Q ss_pred C--CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 264 P--RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 264 p--~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+ .. |+|++...+|++. +.+.+.|+|||++++.-..
T Consensus 158 ~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 158 KELGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEcc
Confidence 2 22 9999999998653 6778999999999997653
No 205
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.88 E-value=8.5e-10 Score=96.40 Aligned_cols=98 Identities=12% Similarity=0.165 Sum_probs=77.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---CC-----CC-
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---VP-----RG- 266 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~p-----~~- 266 (370)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+. .+ ..
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 34568999999999999999999887 789999998 8877766542 5799999998652 11 33
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
|+|++... ......+++.+.++|+|||.+++.+...
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 99998543 2345688999999999999999876543
No 206
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.88 E-value=9e-10 Score=101.82 Aligned_cols=98 Identities=19% Similarity=0.139 Sum_probs=76.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCC---CCCC-C-CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFE---NVPR-G-DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~---~~p~-~-D~i 269 (370)
..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+ ..+. . |+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888889999998 888877653 2579999999875 2333 3 999
Q ss_pred EecccccCCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 017495 270 FLKWMLHGWTDEH--CLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 270 ~~~~vLh~~~d~~--~~~iL~~~~~~L~pgG~lli~ 303 (370)
++....+..+.+. ...+++.++++|+|||+|++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9854422111111 368999999999999999985
No 207
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.88 E-value=8.7e-10 Score=101.26 Aligned_cols=100 Identities=17% Similarity=0.124 Sum_probs=77.9
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-----------CCCCeEEeccCCCC--C-CCC-CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-----------FPGVEHVGGDMFEN--V-PRG-DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~D~~~~--~-p~~-D~i 269 (370)
+.+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. . +.. |+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 3568999999999999999999878889999998 888776543 25799999998762 2 233 999
Q ss_pred EecccccC---CChhH--HHHHHHHHHHhCCCCcEEEEEee
Q 017495 270 FLKWMLHG---WTDEH--CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 270 ~~~~vLh~---~~d~~--~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
++....|. -+... ...+++.++++|+|||.|++...
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 99766553 11111 25899999999999999998643
No 208
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=98.88 E-value=7.4e-11 Score=104.11 Aligned_cols=134 Identities=19% Similarity=0.113 Sum_probs=93.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC-CEEEeccccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG-DAIFLKWMLH 276 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~-D~i~~~~vLh 276 (370)
+..+|||+|||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 57899999999999999999864 88999998 8888877642 379999999987 32223 9999999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceE
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEI 356 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~ 356 (370)
+..+. ...+.+++++|+|||.+++........ +.... -......+++.+++...|.-.+..
T Consensus 156 ~~~~~--~~~~~~~~~~L~pgG~~i~~~~~~~~~-------------~~~~~----lp~~~~~~~~~~~l~~~g~~~i~~ 216 (241)
T 3gdh_A 156 GPDYA--TAETFDIRTMMSPDGFEIFRLSKKITN-------------NIVYF----LPRNADIDQVASLAGPGGQVEIEQ 216 (241)
T ss_dssp SGGGG--GSSSBCTTTSCSSCHHHHHHHHHHHCS-------------CEEEE----EETTBCHHHHHHTTCTTCCEEEEE
T ss_pred Ccchh--hhHHHHHHhhcCCcceeHHHHHHhhCC-------------ceEEE----CCCCCCHHHHHHHhccCCCEEEEe
Confidence 86654 346778999999999865533211000 00000 011235677888887777655554
Q ss_pred EecCC
Q 017495 357 VCCAY 361 (370)
Q Consensus 357 ~~~~~ 361 (370)
....+
T Consensus 217 ~~~~~ 221 (241)
T 3gdh_A 217 NFLNN 221 (241)
T ss_dssp EEETT
T ss_pred hhhcC
Confidence 44433
No 209
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.87 E-value=8.9e-10 Score=99.26 Aligned_cols=98 Identities=19% Similarity=0.155 Sum_probs=75.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCC--CC-CCC-CEEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFE--NV-PRG-DAIFL 271 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~--~~-p~~-D~i~~ 271 (370)
.+.+|||||||+|..+..+++..+..+++++|+ |.+++.+++ .+|++++.+|..+ .. +.. |+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 568999999999999999998777789999998 888886653 2589999999876 22 233 99999
Q ss_pred cccccCCChhH--HHHHHHHHHHhCCCCcEEEEEe
Q 017495 272 KWMLHGWTDEH--CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 272 ~~vLh~~~d~~--~~~iL~~~~~~L~pgG~lli~e 304 (370)
....+..+... ...+++.++++|+|||.+++..
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 65443222111 1478999999999999998853
No 210
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.87 E-value=4.8e-09 Score=91.43 Aligned_cols=94 Identities=19% Similarity=0.145 Sum_probs=75.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCC-----------CCCCeEEeccCCCCCC-C-C-CE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPS-----------FPGVEHVGGDMFENVP-R-G-DA 268 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~D~~~~~p-~-~-D~ 268 (370)
..+..+|||||||+|..+..+++.+ +..+++++|. +.+++.+++ ..+++++.+|+....+ . . |+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4567899999999999999999885 6679999998 887776653 2478999999876322 2 3 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|++...++++. +++.+.|+|||+|++....
T Consensus 155 i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 99998887654 4688999999999997643
No 211
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.87 E-value=1e-09 Score=100.22 Aligned_cols=99 Identities=17% Similarity=0.118 Sum_probs=74.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCC--CCC-CC-CEEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFE--NVP-RG-DAIF 270 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~--~~p-~~-D~i~ 270 (370)
..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ +.+ .. |+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888889999998 888876653 3579999999865 222 33 9999
Q ss_pred ecccccCCChh--HHHHHHHHHHHhCCCCcEEEEEe
Q 017495 271 LKWMLHGWTDE--HCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 271 ~~~vLh~~~d~--~~~~iL~~~~~~L~pgG~lli~e 304 (370)
+....+..+.. ....++++++++|+|||.|++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 86544322211 12478999999999999999865
No 212
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.87 E-value=1.1e-09 Score=96.47 Aligned_cols=96 Identities=16% Similarity=0.147 Sum_probs=76.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC--C-C------CCC-
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE--N-V------PRG- 266 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~--~-~------p~~- 266 (370)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.++++ ++++++.+|..+ + . +..
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 3567999999999999999999987 789999998 8888776542 479999999875 1 1 233
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|+|++... ..+...+++.+.++|+|||.|++.+..
T Consensus 149 D~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~ 183 (237)
T 3c3y_A 149 DFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTL 183 (237)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred CEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 99987532 334578999999999999999875543
No 213
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=98.87 E-value=6.8e-10 Score=95.26 Aligned_cols=97 Identities=15% Similarity=0.018 Sum_probs=74.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCC-C-C---CC-CCEEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFE-N-V---PR-GDAIFL 271 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~-~-~---p~-~D~i~~ 271 (370)
+..+|||+|||+|.++..++.+. ..+++++|+ +.+++.++++ ++++++.+|+.+ . . .. .|+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 35799999999999999877764 358999998 8888877642 478999999876 2 1 23 599999
Q ss_pred cccccCCChhHHHHHHHHH--HHhCCCCcEEEEEeecC
Q 017495 272 KWMLHGWTDEHCLKLLKNC--WEALPENGKVIIVESIL 307 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~--~~~L~pgG~lli~e~~~ 307 (370)
...+| . .....+++.+ .++|+|||.+++.....
T Consensus 132 ~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 87755 2 3456788888 56799999999876644
No 214
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.86 E-value=1.6e-09 Score=97.93 Aligned_cols=98 Identities=19% Similarity=0.194 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC----------------CCCCCeEEeccCCCC--CCCC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP----------------SFPGVEHVGGDMFEN--VPRG 266 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~----------------~~~rv~~~~~D~~~~--~p~~ 266 (370)
..+.+|||||||+|..+..+++. +..+++++|+ |.+++.++ ..++++++.+|..+. .+..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 35689999999999999999998 8889999998 88877654 235789999997651 1333
Q ss_pred -CEEEecccccCCChhH--HHHHHHHHHHhCCCCcEEEEEe
Q 017495 267 -DAIFLKWMLHGWTDEH--CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~--~~~iL~~~~~~L~pgG~lli~e 304 (370)
|+|++....+..+... ...+++.++++|+|||.+++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999865543222122 2678999999999999999863
No 215
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.85 E-value=9.6e-10 Score=100.78 Aligned_cols=99 Identities=21% Similarity=0.156 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCCC--C-CCC-CEEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFEN--V-PRG-DAIF 270 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~~--~-p~~-D~i~ 270 (370)
..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. . +.. |+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 3568999999999999999999878889999998 888876543 25789999998762 2 233 9999
Q ss_pred ecccccCCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 017495 271 LKWMLHGWTDEHC--LKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 271 ~~~vLh~~~d~~~--~~iL~~~~~~L~pgG~lli~e 304 (370)
+...-+..++... ..+++.++++|+|||.|++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8554332122221 689999999999999999864
No 216
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.85 E-value=8e-10 Score=97.05 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=76.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---C--C---CC-CE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---V--P---RG-DA 268 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~--p---~~-D~ 268 (370)
+..+|||||||+|..+..+++.+| +.+++++|. +..++.+++. ++++++.+|+.+. . + .. |+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 467999999999999999999987 789999998 8887776642 4699999997541 1 1 33 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
|++... .++...+++.+.+.|+|||.|++.+...
T Consensus 152 V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 152 IFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred EEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 987644 2345689999999999999999876554
No 217
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=98.85 E-value=1.8e-09 Score=92.72 Aligned_cols=97 Identities=10% Similarity=0.014 Sum_probs=73.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC--CCCC-C-CEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE--NVPR-G-DAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~--~~p~-~-D~i~~~~vL 275 (370)
+..+|||+|||+|.++..++.+.. .+++++|. +.+++.++++ ++++++.+|+.+ +.+. . |+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 357999999999999998777643 48999998 8888877642 479999999876 3333 3 999997775
Q ss_pred cCCChhHHHHHHHHHHH--hCCCCcEEEEEeecC
Q 017495 276 HGWTDEHCLKLLKNCWE--ALPENGKVIIVESIL 307 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~--~L~pgG~lli~e~~~ 307 (370)
| .. ....+++.+.+ +|+|||.+++.....
T Consensus 133 ~-~~--~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 133 R-RG--LLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp S-TT--THHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred C-CC--cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 5 22 33567888876 499999999876643
No 218
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.85 E-value=1.2e-09 Score=100.48 Aligned_cols=99 Identities=17% Similarity=0.074 Sum_probs=75.6
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCCC---CCCC-CEEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFEN---VPRG-DAIF 270 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~~---~p~~-D~i~ 270 (370)
..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. .+.. |+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3568999999999999999998878889999998 888876543 25799999998762 2333 9999
Q ss_pred ecccccCCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 017495 271 LKWMLHGWTDEHC--LKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 271 ~~~vLh~~~d~~~--~~iL~~~~~~L~pgG~lli~e 304 (370)
+...-+..+.... ..++++++++|+|||.+++..
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8643221111221 589999999999999999853
No 219
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.84 E-value=4.3e-09 Score=91.20 Aligned_cols=96 Identities=9% Similarity=0.010 Sum_probs=78.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC-CEEEeccccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG-DAIFLKWMLH 276 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~-D~i~~~~vLh 276 (370)
...+.+|||||||+|-++..+. |..+++++|+ +.+++.+++. .+.++...|... +.|.. |++++.-++|
T Consensus 103 ~~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 103 AETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp SCCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHH
Confidence 3567899999999999998877 8999999999 8888877653 457889999988 44444 9999999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
++.+++....+ ++...|++++.++-..
T Consensus 180 ~LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 180 LLEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred HhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 98776655555 8999999988777665
No 220
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.83 E-value=2.8e-09 Score=96.56 Aligned_cols=103 Identities=19% Similarity=0.258 Sum_probs=75.5
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPR 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~ 265 (370)
...++..+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +.+.
T Consensus 17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 455666665 6677899999999999999999984 48899998 7777665431 478999999987 6665
Q ss_pred CCEEEecccccCCChhHHHHHHHH--------------H--HHhCCCCcEEE
Q 017495 266 GDAIFLKWMLHGWTDEHCLKLLKN--------------C--WEALPENGKVI 301 (370)
Q Consensus 266 ~D~i~~~~vLh~~~d~~~~~iL~~--------------~--~~~L~pgG~ll 301 (370)
.|+|++ +..++|+.+....+|.. + +.+++|||+++
T Consensus 94 fD~vv~-nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 94 FDTCVA-NLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CSEEEE-ECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred hcEEEE-ecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 598888 44445555555555532 2 46899999653
No 221
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.82 E-value=3.1e-09 Score=95.54 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=79.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCC-CCCC-CEEEecccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFEN-VPRG-DAIFLKWML 275 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~-~p~~-D~i~~~~vL 275 (370)
+.+..+|||+|||+|.++..+++..+..+++++|. |.+++.++++ .++.++.+|+.+. .+.. |+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 55678999999999999999999988889999998 8888877642 4688999999874 2223 999886543
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
....+++.+.+.|+|||.+++.+....
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~~ 223 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVAE 223 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence 335789999999999999999887653
No 222
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.81 E-value=2.8e-09 Score=99.69 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=70.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC-------CCCCeEEeccCCC-CCCCC-CEEEecccccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS-------FPGVEHVGGDMFE-NVPRG-DAIFLKWMLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~D~~~-~~p~~-D~i~~~~vLh~ 277 (370)
+..+|||||||+|.++...++. .-.+++++|...+++.+++ .++|+++.+|+.+ ..|+. |+|++-..-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 4679999999999998876664 3458999997545555543 2679999999988 67766 99988433322
Q ss_pred CC-hhHHHHHHHHHHHhCCCCcEEEE
Q 017495 278 WT-DEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 278 ~~-d~~~~~iL~~~~~~L~pgG~lli 302 (370)
+. ......++....+.|+|||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 22 22456888888999999998874
No 223
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.81 E-value=2.4e-09 Score=97.43 Aligned_cols=97 Identities=23% Similarity=0.230 Sum_probs=72.4
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCC--CC-CCC-CEEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFE--NV-PRG-DAIFL 271 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~--~~-p~~-D~i~~ 271 (370)
.+.+|||||||+|..+..+++..+..+++++|+ +.+++.+++ .++++++.+|+.+ +. +.. |+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 458999999999999999999878889999998 888776543 2579999999865 22 233 99997
Q ss_pred cccccCCChh---HHHHHHHHHHHhCCCCcEEEEE
Q 017495 272 KWMLHGWTDE---HCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 272 ~~vLh~~~d~---~~~~iL~~~~~~L~pgG~lli~ 303 (370)
...-+..... ....++++++++|+|||.|++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 4332201111 1158899999999999999985
No 224
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.81 E-value=1.2e-08 Score=87.10 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=67.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCCCCCCC-CEEEecccccCCChh
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFENVPRG-DAIFLKWMLHGWTDE 281 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~~~p~~-D~i~~~~vLh~~~d~ 281 (370)
..+..+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ .+++++.+|+.+ .+.. |+|++...+|++.+.
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCc
Confidence 345689999999999999999886 5557999998 8888877653 279999999886 3344 999999999998765
Q ss_pred HHHHHHHHHHHhC
Q 017495 282 HCLKLLKNCWEAL 294 (370)
Q Consensus 282 ~~~~iL~~~~~~L 294 (370)
....+++++.+.+
T Consensus 127 ~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 127 SDRAFIDKAFETS 139 (200)
T ss_dssp -CHHHHHHHHHHE
T ss_pred hhHHHHHHHHHhc
Confidence 5568899999998
No 225
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.80 E-value=1.2e-08 Score=91.94 Aligned_cols=115 Identities=11% Similarity=0.050 Sum_probs=81.9
Q ss_pred CCCCCeEEEEcC------cccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCCCCCeE-EeccCCC-CCCCC-CEEEecc
Q 017495 205 FDGLKVLVDVGG------GIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSFPGVEH-VGGDMFE-NVPRG-DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~------G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~~rv~~-~~~D~~~-~~p~~-D~i~~~~ 273 (370)
.++..+|||+|| |+|. ..+++..| +.+++++|+ +. + .++++ +.+|+.+ +.+.. |+|++..
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~ 131 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V------SDADSTLIGDCATVHTANKWDLIISDM 131 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B------CSSSEEEESCGGGCCCSSCEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C------CCCEEEEECccccCCccCcccEEEEcC
Confidence 567789999999 4476 44566666 689999998 55 2 47999 9999987 44444 9999864
Q ss_pred cccC--------C-ChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 274 MLHG--------W-TDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 274 vLh~--------~-~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
..+. . ..+....+|+.++++|||||+|++..+... ...++.+
T Consensus 132 ~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-----------------------------~~~~l~~ 182 (290)
T 2xyq_A 132 YDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-----------------------------WNADLYK 182 (290)
T ss_dssp CCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------------------------CCHHHHH
T ss_pred CccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-----------------------------CHHHHHH
Confidence 3221 0 112345899999999999999998643211 1236778
Q ss_pred HHHhCCCCcceEE
Q 017495 345 LAKNSGFSGLEIV 357 (370)
Q Consensus 345 ll~~aGf~~v~~~ 357 (370)
++++.||..+++.
T Consensus 183 ~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 183 LMGHFSWWTAFVT 195 (290)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHHHcCCcEEEEE
Confidence 8888888877665
No 226
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.79 E-value=4.3e-09 Score=104.49 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC---CCCC--CCEEEecc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE---NVPR--GDAIFLKW 273 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~---~~p~--~D~i~~~~ 273 (370)
.++.+|||||||.|.++..|++. +..++++|. +..++.|+.+ .+|++.++++.+ ..+. .|+|++..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 35689999999999999999995 678999998 8888776532 258999999875 2332 39999999
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
+|||+++++....+..+.+.|.++|+.++...+..+
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e 178 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKE 178 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTT
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEecccc
Confidence 999998887555566777888888887777665443
No 227
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.76 E-value=9.2e-09 Score=91.81 Aligned_cols=89 Identities=18% Similarity=0.079 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------CCCeEEeccCCCCCCCC-CEEEecc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----------PGVEHVGGDMFENVPRG-DAIFLKW 273 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~D~~~~~p~~-D~i~~~~ 273 (370)
+.+.+|||||||+|..+..+++. + .+++++|+ +.+++.++++ ++++++.+|..+.. .. |+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii~d- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIFCL- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEEES-
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEEEC-
Confidence 35689999999999999999988 7 89999999 9999988753 47899999987633 33 999986
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
.+++. .+++.++++|+|||.+++..
T Consensus 147 ----~~dp~--~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 147 ----QEPDI--HRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp ----SCCCH--HHHHHHHTTEEEEEEEEEEE
T ss_pred ----CCChH--HHHHHHHHhcCCCcEEEEEc
Confidence 23342 48999999999999999853
No 228
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.73 E-value=4.2e-08 Score=93.70 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=78.3
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCC-CC-CEEEe
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVP-RG-DAIFL 271 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p-~~-D~i~~ 271 (370)
..+++.+. ..+..+|||+|||+|.++..+++++ +..+++++|+ +.+++.+ .+++++.+|+.+..+ .. |+|++
T Consensus 29 ~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 29 DFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 104 (421)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence 34444444 3445699999999999999999887 6789999998 8877766 579999999987433 33 99999
Q ss_pred cc--c-c-------cCCChhHH-----------------HHHHHHHHHhCCCCcEEEEEee
Q 017495 272 KW--M-L-------HGWTDEHC-----------------LKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 272 ~~--v-L-------h~~~d~~~-----------------~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+- . . +|++++.. ..+++.+.+.|+|||+++++.+
T Consensus 105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 41 1 1 11223321 2679999999999999998765
No 229
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.72 E-value=1.1e-08 Score=92.14 Aligned_cols=103 Identities=12% Similarity=0.070 Sum_probs=76.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CC-----CCC-CEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NV-----PRG-DAI 269 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~-----p~~-D~i 269 (370)
..+..+|||+|||+|..+..+++..++ .+++++|. +..++.++++ .+++++.+|+.+ +. +.. |+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 556789999999999999999998877 78999998 7777765432 478999999876 22 333 999
Q ss_pred Eec------ccccC---CChh-------HHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 270 FLK------WMLHG---WTDE-------HCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 270 ~~~------~vLh~---~~d~-------~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
++. .+++. |+.+ ....+|+++.+.|||||+|++.....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 885 22221 1111 12689999999999999999977654
No 230
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.70 E-value=4.8e-08 Score=91.83 Aligned_cols=122 Identities=15% Similarity=0.064 Sum_probs=90.4
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCC-C-CEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPR-G-DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~-~-D~i~~~~ 273 (370)
+.+..+|||+|||+|.++..++...+..+++++|+ +.+++.++++ ++++++.+|+.+ +.+. . |+|+++-
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 56778999999999999999999887778999998 8888877653 479999999988 5543 3 9999954
Q ss_pred cccCCC-----hhH-HHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHH
Q 017495 274 MLHGWT-----DEH-CLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 274 vLh~~~-----d~~-~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 347 (370)
..+... -++ -..+++.++++| ||.++++.. +.+.+++.+.
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--------------------------------~~~~~~~~~~ 340 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT--------------------------------EKKAIEEAIA 340 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES--------------------------------CHHHHHHHHH
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC--------------------------------CHHHHHHHHH
Confidence 433211 111 257889999988 555555321 2455777889
Q ss_pred hCCCCcceEEecC
Q 017495 348 NSGFSGLEIVCCA 360 (370)
Q Consensus 348 ~aGf~~v~~~~~~ 360 (370)
+.||+..+...+.
T Consensus 341 ~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 341 ENGFEIIHHRVIG 353 (373)
T ss_dssp HTTEEEEEEEEEE
T ss_pred HcCCEEEEEEEEE
Confidence 9999988877764
No 231
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.70 E-value=2.3e-08 Score=96.37 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=80.4
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-C--CC-CC-CEEEe
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-N--VP-RG-DAIFL 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~--~p-~~-D~i~~ 271 (370)
..+..+|||+|||+|..+..+++..++ .+++++|. +..++.++++ .+++++.+|+.+ + ++ .. |+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 567789999999999999999999887 79999998 7777655432 468999999987 3 44 33 99996
Q ss_pred ------cccccCCChh-------HH-------HHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 272 ------KWMLHGWTDE-------HC-------LKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 272 ------~~vLh~~~d~-------~~-------~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
..+++..++. +. ..+|+++.+.|||||+|++.+....
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 3455544432 11 5789999999999999999876553
No 232
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.69 E-value=1.1e-07 Score=81.54 Aligned_cols=88 Identities=16% Similarity=0.046 Sum_probs=69.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----C-CCeEEeccCCCCCCCC-CEEEecccccC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----P-GVEHVGGDMFENVPRG-DAIFLKWMLHG 277 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~-rv~~~~~D~~~~~p~~-D~i~~~~vLh~ 277 (370)
..+..+|||+|||+|.++..+++.. ..+++++|. +.+++.+++. . +++++.+|+.+ .+.. |+|++.-.+|.
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGS 124 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCcc
Confidence 3456799999999999999998863 347999998 8888776543 1 68999999887 2334 99999888887
Q ss_pred CChhHHHHHHHHHHHhC
Q 017495 278 WTDEHCLKLLKNCWEAL 294 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L 294 (370)
+.......+|+.+.+.+
T Consensus 125 ~~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS 141 (207)
T ss_dssp SSTTTTHHHHHHHHHHC
T ss_pred ccCCchHHHHHHHHHhc
Confidence 76555568899999998
No 233
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.68 E-value=2.5e-08 Score=88.11 Aligned_cols=104 Identities=11% Similarity=0.169 Sum_probs=73.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCC-CCCC-CC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFE-NVPR-GD 267 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~-~~p~-~D 267 (370)
...+++.+. ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .+
T Consensus 19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 445666555 5677899999999999999999986 68999998 777776543 2689999999988 6664 35
Q ss_pred EEEecccccCCChhHHHHHH--------------HHHHHhCCCCcEEE
Q 017495 268 AIFLKWMLHGWTDEHCLKLL--------------KNCWEALPENGKVI 301 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL--------------~~~~~~L~pgG~ll 301 (370)
.+++.+.-++++.+-...++ ..+.+.++|+|.+.
T Consensus 96 ~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~ 143 (244)
T 1qam_A 96 YKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLA 143 (244)
T ss_dssp CEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHH
T ss_pred eEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchh
Confidence 55566666655544333433 33667777776543
No 234
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.67 E-value=2e-08 Score=90.02 Aligned_cols=120 Identities=12% Similarity=0.100 Sum_probs=89.4
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCC--CEEEeccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRG--DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~--D~i~~~~v 274 (370)
.+++.+|||+|||+|.++..+++. +..+++++|+ |..++.++++ ++++++.+|..+-.++. |.|++..-
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 456789999999999999999886 4568999998 8888876642 67999999998733333 98887532
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGL 354 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v 354 (370)
. ....+|..+.++|+|||.|.+.+.+..+. ......+.++++.++.|+++.
T Consensus 202 ~------~~~~~l~~a~~~lk~gG~ih~~~~~~e~~-----------------------~~~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 202 V------RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp S------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred C------cHHHHHHHHHHHcCCCCEEEEEeeecccc-----------------------cchhHHHHHHHHHHHcCCcEE
Confidence 1 23467888999999999998877654321 001235678888899998753
No 235
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.67 E-value=2.1e-08 Score=93.23 Aligned_cols=100 Identities=10% Similarity=0.111 Sum_probs=79.2
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCC-----CeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCC-CC-CEEEec
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPC-----IKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVP-RG-DAIFLK 272 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p-~~-D~i~~~ 272 (370)
.+..+|||+|||+|.++..+++..+. .+++++|+ +.+++.++.. .++.++.+|.+.+.+ .. |+|++.
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 35679999999999999999988765 68899998 8887776542 268999999988544 33 999998
Q ss_pred ccccCCChhHH----------------HHHHHHHHHhCCCCcEEEEEee
Q 017495 273 WMLHGWTDEHC----------------LKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 273 ~vLh~~~d~~~----------------~~iL~~~~~~L~pgG~lli~e~ 305 (370)
--+++++.++. ..+++++.+.|+|||+++++.+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 77666654432 2689999999999999998664
No 236
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.66 E-value=2.7e-07 Score=85.98 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=94.4
Q ss_pred CCeEEEEcCcccHHHHHH--------HhhC-------CCCeEEEeehhhH--------HHhCCC----------C-CC--
Q 017495 208 LKVLVDVGGGIGVTLGMI--------TSRY-------PCIKGISFDLPHV--------LANAPS----------F-PG-- 251 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l--------~~~~-------p~~~~~~~D~p~~--------~~~a~~----------~-~r-- 251 (370)
..+|+|+|||+|..+..+ .+++ |..+++.-|+|.- +....+ . .+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 579999999999998876 3333 7788888897531 111111 0 01
Q ss_pred -CeEEeccCCC-CCCCC--CEEEecccccCCChh------------------------------------HHHHHHHHHH
Q 017495 252 -VEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDE------------------------------------HCLKLLKNCW 291 (370)
Q Consensus 252 -v~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~------------------------------------~~~~iL~~~~ 291 (370)
+.-+.+.+.. .+|.. |+|+++.+||.+++. +...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2346666666 67765 999999999987621 3345799999
Q ss_pred HhCCCCcEEEEEeecCCCCCCCCccchhhhhh-hh----HH-hhhc------------CCCcccCHHHHHHHHH-hCCCC
Q 017495 292 EALPENGKVIIVESILPLVPENQASSHIVFEQ-DL----FM-LAQT------------TGGRERSKKEYEALAK-NSGFS 352 (370)
Q Consensus 292 ~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~-d~----~~-~~~~------------~~~~~~t~~e~~~ll~-~aGf~ 352 (370)
+.|+|||++++.-...++...... ......+ +. +. +... ..-..++.+|++++++ +.||+
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~-~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~ 291 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRTSVDPTDQ-GGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFA 291 (374)
T ss_dssp HHEEEEEEEEEEEEECCCSSTTCC-HHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEE
T ss_pred HHhCCCCEEEEEEecCCCCccccc-cchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcE
Confidence 999999999998886654211100 0000011 11 10 1100 0112368999999998 59999
Q ss_pred cceEEe
Q 017495 353 GLEIVC 358 (370)
Q Consensus 353 ~v~~~~ 358 (370)
+..+.-
T Consensus 292 I~~le~ 297 (374)
T 3b5i_A 292 IDKLVV 297 (374)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877644
No 237
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.64 E-value=8.3e-09 Score=91.26 Aligned_cols=108 Identities=12% Similarity=0.148 Sum_probs=79.3
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----CCCeEEeccCCC-CCCC-CC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----PGVEHVGGDMFE-NVPR-GD 267 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~-~~p~-~D 267 (370)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +.+. ..
T Consensus 18 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 94 (245)
T 1yub_A 18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence 345555555 6677899999999999999999985 78999998 8888877764 468999999988 5553 33
Q ss_pred EEEecccccCCChhHHHHHH--------------HHHHHhCCCCcEEEEEee
Q 017495 268 AIFLKWMLHGWTDEHCLKLL--------------KNCWEALPENGKVIIVES 305 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL--------------~~~~~~L~pgG~lli~e~ 305 (370)
.+++.+.-++.+++....++ +.+.+.|+|||++.+...
T Consensus 95 f~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 95 YKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred cEEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 44555555555544444443 668999999999877543
No 238
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.58 E-value=8.5e-08 Score=88.57 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=73.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------C-CCeEEeccCCCCC------CC-CCEEE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------P-GVEHVGGDMFENV------PR-GDAIF 270 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~-rv~~~~~D~~~~~------p~-~D~i~ 270 (370)
+..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ + +++++.+|+++.. .. .|+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 45799999999999999999854 49999998 8888877642 2 4899999987721 22 39999
Q ss_pred ecc----------cccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 271 LKW----------MLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 271 ~~~----------vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+.- +++. .++...+++.+.++|+|||.|++....
T Consensus 231 ~dPP~~~~~~~~~~~~~--~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQL--FDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEH--HHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ECCccccCCchHHHHHH--HHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 832 1121 234568999999999999998876654
No 239
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.58 E-value=1e-07 Score=91.39 Aligned_cols=103 Identities=16% Similarity=0.159 Sum_probs=79.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCC---CCC-C-CEEEe--
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFEN---VPR-G-DAIFL-- 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~---~p~-~-D~i~~-- 271 (370)
..+..+|||+|||+|..+.++++..++.+++++|. +..++.++++ -+++++.+|+.+. ++. . |+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 56678999999999999999999998889999998 7766655432 2588999998872 333 3 99986
Q ss_pred ----cccccCCChh-------HH-------HHHHHHHHHhCCCCcEEEEEeecC
Q 017495 272 ----KWMLHGWTDE-------HC-------LKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 272 ----~~vLh~~~d~-------~~-------~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
..++++.++. +. ..+|+++.+.|||||+|++.+...
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 2345543331 11 488999999999999999987654
No 240
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.56 E-value=1.1e-07 Score=86.64 Aligned_cols=100 Identities=17% Similarity=0.283 Sum_probs=71.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC-CCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE-NVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~-~~p~~ 266 (370)
...++..+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+..
T Consensus 31 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 31 LDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 345555555 667789999999999999999986 468999998 877776653 2579999999987 55545
Q ss_pred CEEEecccccCCChhHHHHHH---------------HHHHHhCCCCc
Q 017495 267 DAIFLKWMLHGWTDEHCLKLL---------------KNCWEALPENG 298 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL---------------~~~~~~L~pgG 298 (370)
|+|++. ..+++..+....+| ..+.+.++|+|
T Consensus 108 D~Vv~n-~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 108 DVCTAN-IPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp SEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred CEEEEc-CCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 998874 45556766666666 34678888877
No 241
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.56 E-value=4.7e-08 Score=93.81 Aligned_cols=102 Identities=10% Similarity=0.043 Sum_probs=77.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-C--CCCC-CEEEe-
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-N--VPRG-DAIFL- 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~--~p~~-D~i~~- 271 (370)
..+..+|||+|||+|..+..+++..++ .+++++|+ +..++.++++ . +.++.+|+.+ + .+.. |+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 556789999999999999999998875 68999998 8887776542 4 8899999766 2 2333 99986
Q ss_pred ------------cccccCCChhHH-------HHHHHHHHHhCCCCcEEEEEeecC
Q 017495 272 ------------KWMLHGWTDEHC-------LKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 272 ------------~~vLh~~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
..+...|+.++. ..+|+.+.+.|||||+|+......
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 122223333333 679999999999999999876544
No 242
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.54 E-value=1.7e-07 Score=90.75 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=77.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-C--CCCC-CEEEec--
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-N--VPRG-DAIFLK-- 272 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~--~p~~-D~i~~~-- 272 (370)
+..+|||+|||+|..+..+++..+ ..+++++|+ +..++.++++ .++.++.+|+.+ + .+.. |+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 478999998 7777766542 468999999887 3 3344 999971
Q ss_pred ----ccc-------cCCChhH-------HHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 273 ----WML-------HGWTDEH-------CLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 273 ----~vL-------h~~~d~~-------~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.++ ++|+.++ -.++|+.+.++|||||+|++.....
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 223 2344332 2478999999999999999877644
No 243
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=98.50 E-value=7.2e-07 Score=82.19 Aligned_cols=142 Identities=12% Similarity=0.077 Sum_probs=104.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC---------------------------CCCCeEEecc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS---------------------------FPGVEHVGGD 258 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~---------------------------~~rv~~~~~D 258 (370)
.+...|+.+|||.......|...+++++++-+|+|++++..++ .+++.++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3568999999999999999998888999999999988775432 1578999999
Q ss_pred CCC-CC---------C-CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhh--h
Q 017495 259 MFE-NV---------P-RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQ--D 324 (370)
Q Consensus 259 ~~~-~~---------p-~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~--d 324 (370)
+.+ .+ . .. .++++-.+|++++.+++.++|+.+.+.+ |+|.+++.|.+.+..+.. .+...+ .
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~----~fg~~m~~~ 250 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPND----RFGAIMQSN 250 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTC----CHHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcc----hHHHHHHHH
Confidence 987 32 1 22 7888899999999999999999999988 788888899987732211 111111 1
Q ss_pred hHH-hhh-cCC-CcccCHHHHHHHHHhCCCC
Q 017495 325 LFM-LAQ-TTG-GRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 325 ~~~-~~~-~~~-~~~~t~~e~~~ll~~aGf~ 352 (370)
+.. ... ..+ ....+.++..+.|.++||+
T Consensus 251 l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 251 LKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred hhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 110 000 001 1335889999999999997
No 244
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.45 E-value=3.1e-06 Score=78.28 Aligned_cols=151 Identities=17% Similarity=0.101 Sum_probs=92.2
Q ss_pred CCCCeEEEEcCcccHHHHHHHhh----------------CCCCeEEEeehhh--HHHhCCCCC------C---CeEEecc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSR----------------YPCIKGISFDLPH--VLANAPSFP------G---VEHVGGD 258 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~----------------~p~~~~~~~D~p~--~~~~a~~~~------r---v~~~~~D 258 (370)
+...+|+|+||++|..+..+... .|...++.-|+|. .-...+..+ + +.-+.+.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34578999999999877654443 4667788889742 111111111 2 2335666
Q ss_pred CCC-CCCCC--CEEEecccccCCChh-------------------------------HHHHHHHHHHHhCCCCcEEEEEe
Q 017495 259 MFE-NVPRG--DAIFLKWMLHGWTDE-------------------------------HCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 259 ~~~-~~p~~--D~i~~~~vLh~~~d~-------------------------------~~~~iL~~~~~~L~pgG~lli~e 304 (370)
|.. .+|.. |+|++++.||.+++. +-..+|+..++.|+|||++++.-
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 766 67765 999999999976541 22456999999999999999988
Q ss_pred ecCCCCCCCC-----ccch-hhhhhhhHHhhh---------cCCCcccCHHHHHHHHHhCCC-CcceE
Q 017495 305 SILPLVPENQ-----ASSH-IVFEQDLFMLAQ---------TTGGRERSKKEYEALAKNSGF-SGLEI 356 (370)
Q Consensus 305 ~~~~~~~~~~-----~~~~-~~~~~d~~~~~~---------~~~~~~~t~~e~~~ll~~aGf-~~v~~ 356 (370)
...++..... .... ...+.++..-.. ...-..++.+|++++++++|+ ++..+
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 7665531100 0000 111111110000 001224589999999999965 66654
No 245
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.44 E-value=1.6e-06 Score=80.92 Aligned_cols=150 Identities=17% Similarity=0.098 Sum_probs=91.4
Q ss_pred CCeEEEEcCcccHHHHHHHhh-----------------CCCCeEEEeehhh------------HHHhC----CCCCCCeE
Q 017495 208 LKVLVDVGGGIGVTLGMITSR-----------------YPCIKGISFDLPH------------VLANA----PSFPGVEH 254 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~p~------------~~~~a----~~~~rv~~ 254 (370)
..+|+|+||++|..+..+... .|.+.++.-|+|. ..+.. ....+-.|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 689999999999999887766 4677788889771 11110 01112234
Q ss_pred ---EeccCCC-CCCCC--CEEEecccccCCChhH-------------------------H------------HHHHHHHH
Q 017495 255 ---VGGDMFE-NVPRG--DAIFLKWMLHGWTDEH-------------------------C------------LKLLKNCW 291 (370)
Q Consensus 255 ---~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~-------------------------~------------~~iL~~~~ 291 (370)
+.+.|.. .+|.. |+|+++++||.+++.. + ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555 57765 9999999999765321 1 12388889
Q ss_pred HhCCCCcEEEEEeecCCCC--CCCCccchhhhhhhhHHhh---------hcCCCcccCHHHHHHHHHhCC-CCcceEE
Q 017495 292 EALPENGKVIIVESILPLV--PENQASSHIVFEQDLFMLA---------QTTGGRERSKKEYEALAKNSG-FSGLEIV 357 (370)
Q Consensus 292 ~~L~pgG~lli~e~~~~~~--~~~~~~~~~~~~~d~~~~~---------~~~~~~~~t~~e~~~ll~~aG-f~~v~~~ 357 (370)
+.|+|||++++.-...++. ...........+.++..-. ....-..++.+|++++++++| |++..+.
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence 9999999999988766543 1110000111111111000 000122368999999999985 7777654
No 246
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.43 E-value=1.4e-07 Score=90.51 Aligned_cols=103 Identities=14% Similarity=0.126 Sum_probs=75.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-C--CCCC-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-N--VPRG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~--~p~~-D~i~~~ 272 (370)
..+..+|||+|||+|..+.++++..++ .+++++|+ +..++.++++ .++.++.+|..+ . .+.. |+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 556789999999999999999998664 68999998 7777766542 468888898765 2 3334 999872
Q ss_pred c------cccC-------CChhHH-------HHHHHHHHHhCCCCcEEEEEeecC
Q 017495 273 W------MLHG-------WTDEHC-------LKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 273 ~------vLh~-------~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
- ++.. |+.++. ..+|+.+.+.|||||+|+......
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 1 2222 221111 278999999999999999876654
No 247
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.37 E-value=6.1e-07 Score=84.67 Aligned_cols=111 Identities=9% Similarity=-0.018 Sum_probs=79.6
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCC--------------------------------------CeEE
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPC--------------------------------------IKGI 235 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 235 (370)
.+..++.... +.+...|||.+||+|.+++..+....+ .+++
T Consensus 189 lAa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 189 MAAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 3445555555 888899999999999999988766443 5699
Q ss_pred Eeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC-CEEEec--ccccCCChhHHHHHHHHHHHhCCC--CcEEE
Q 017495 236 SFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG-DAIFLK--WMLHGWTDEHCLKLLKNCWEALPE--NGKVI 301 (370)
Q Consensus 236 ~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~-D~i~~~--~vLh~~~d~~~~~iL~~~~~~L~p--gG~ll 301 (370)
++|. +.+++.++.+ ++++++.+|+.+ +.+.. |+|+++ +....-..++...+.+.+.+.|++ ||.++
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 9998 8888877642 469999999988 44444 999987 322211124455667777777765 89988
Q ss_pred EEee
Q 017495 302 IVES 305 (370)
Q Consensus 302 i~e~ 305 (370)
++..
T Consensus 348 iit~ 351 (393)
T 3k0b_A 348 VLTS 351 (393)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8654
No 248
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.35 E-value=1.2e-06 Score=77.42 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=68.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--CCCeEEeccCCC-CCCCC--CE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--PGVEHVGGDMFE-NVPRG--DA 268 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~D~~~-~~p~~--D~ 268 (370)
...+++.+. ..+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++.+|+.+ +++.. +.
T Consensus 20 ~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 20 LKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 445666665 667789999999999999999986 4578999998 8888877654 578999999988 55542 56
Q ss_pred EEecccccCCChhHHHHHH
Q 017495 269 IFLKWMLHGWTDEHCLKLL 287 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL 287 (370)
+++.+.-++.+.+-...+|
T Consensus 98 ~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 98 KVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp EEEEECCTTTHHHHHHHHH
T ss_pred EEEEECchhccHHHHHHHH
Confidence 7777777776654333333
No 249
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.34 E-value=3e-07 Score=88.48 Aligned_cols=109 Identities=17% Similarity=0.068 Sum_probs=78.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-------------CCCeEEEeeh-hhHHHhCCCC------C--CCe
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-------------PCIKGISFDL-PHVLANAPSF------P--GVE 253 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-p~~~~~a~~~------~--rv~ 253 (370)
..+++.+. .....+|+|.|||+|.++..+.+.. +..+++++|+ +.+++.++.. . +++
T Consensus 161 ~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~ 239 (445)
T 2okc_A 161 QAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 239 (445)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred HHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 34444444 4456799999999999999988764 4567999998 8777766431 2 688
Q ss_pred EEeccCCC-CCCCC-CEEEecccccCCChh---------------HHHHHHHHHHHhCCCCcEEEEEee
Q 017495 254 HVGGDMFE-NVPRG-DAIFLKWMLHGWTDE---------------HCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 254 ~~~~D~~~-~~p~~-D~i~~~~vLh~~~d~---------------~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+..+|.+. +.... |+|+++--++..... .-..+++.+.+.|+|||++.++-+
T Consensus 240 i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 240 IVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp EEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 99999987 33334 999997555442211 124789999999999999998764
No 250
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.34 E-value=1.8e-07 Score=88.22 Aligned_cols=98 Identities=13% Similarity=0.023 Sum_probs=74.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCC------CCC-CEEEec
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENV------PRG-DAIFLK 272 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~------p~~-D~i~~~ 272 (370)
+..+|||+|||+|.++..+++. ..+++++|. +.+++.++++ .+++++.+|+.+.. +.. |+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999987 568999998 8888877642 34899999987621 233 999984
Q ss_pred ccccCCCh-------hHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 273 WMLHGWTD-------EHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 273 ~vLh~~~d-------~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
---+..+. .....+++.+.+.|+|||.|++....
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 22111111 34568999999999999999987653
No 251
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.34 E-value=1.7e-06 Score=81.21 Aligned_cols=111 Identities=13% Similarity=0.000 Sum_probs=82.1
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCC--------------------------------------CeEE
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPC--------------------------------------IKGI 235 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 235 (370)
.+..++.... |.+...|+|.+||+|.+++..+....+ .+++
T Consensus 182 LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 182 MAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 3445555555 888899999999999999988765443 5699
Q ss_pred Eeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC-CEEEec--ccccCCChhHHHHHHHHHHHhCCC--CcEEE
Q 017495 236 SFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG-DAIFLK--WMLHGWTDEHCLKLLKNCWEALPE--NGKVI 301 (370)
Q Consensus 236 ~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~-D~i~~~--~vLh~~~d~~~~~iL~~~~~~L~p--gG~ll 301 (370)
++|. +.+++.++.+ +++++..+|+.+ +.+.. |+|+++ +...--..++...+.+.+.+.|++ ||.+.
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 340 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQF 340 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 9998 8888877652 469999999988 44444 999986 322212335667888888888886 99988
Q ss_pred EEee
Q 017495 302 IVES 305 (370)
Q Consensus 302 i~e~ 305 (370)
++..
T Consensus 341 iit~ 344 (384)
T 3ldg_A 341 ILTN 344 (384)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8754
No 252
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.33 E-value=2.4e-07 Score=87.75 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=74.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------C-CCeEEeccCCCCC------CCC-CEEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------P-GVEHVGGDMFENV------PRG-DAIFL 271 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~-rv~~~~~D~~~~~------p~~-D~i~~ 271 (370)
+..+|||+|||+|.++..+++. +..+++++|. +.+++.++++ . +++++.+|+.+.. ... |+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 6689999999999999999986 4458999998 8888776642 2 7899999987621 223 99998
Q ss_pred cccccCCCh-------hHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 272 KWMLHGWTD-------EHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 272 ~~vLh~~~d-------~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
.--.+..+. .....++..+.+.|+|||.|++....
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 422111111 34568999999999999999887653
No 253
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.32 E-value=1.1e-06 Score=79.37 Aligned_cols=89 Identities=15% Similarity=0.263 Sum_probs=65.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCC-CCCC--C
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFE-NVPR--G 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~-~~p~--~ 266 (370)
...++..+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +++. .
T Consensus 39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 455666665 667789999999999999999997 468899998 877776654 2689999999998 6665 3
Q ss_pred CEEEecccccCCChhHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLL 287 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL 287 (370)
|+|+++ .-++++.+-...+|
T Consensus 116 D~Iv~N-lPy~is~pil~~lL 135 (295)
T 3gru_A 116 NKVVAN-LPYQISSPITFKLI 135 (295)
T ss_dssp SEEEEE-CCGGGHHHHHHHHH
T ss_pred cEEEEe-CcccccHHHHHHHH
Confidence 988865 44444544333333
No 254
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.31 E-value=1.1e-06 Score=82.93 Aligned_cols=98 Identities=13% Similarity=0.060 Sum_probs=70.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCC---CCC-CCEEEeccccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFEN---VPR-GDAIFLKWMLH 276 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~---~p~-~D~i~~~~vLh 276 (370)
+..+|||+|||+|.++..+++. +.+++++|+ +.+++.++++ -..++..+|+++. .+. .|+|++.--..
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 4789999999999999999986 345999998 8888877653 1235778888762 222 39998843211
Q ss_pred CCCh-------hHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 277 GWTD-------EHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 277 ~~~d-------~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
..+. .....+++.+.+.|+|||.|++....
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1111 23358899999999999999976654
No 255
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.30 E-value=4e-07 Score=84.28 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=73.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCCCEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRGDAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~D~i~~~~vLh~ 277 (370)
.+..+|||+|||+|.++.. ++ ...+++++|. +.+++.++++ ++++++.+|+.+.....|+|++.--
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP--- 267 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLP--- 267 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCT---
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCc---
Confidence 4678999999999999999 76 5778999998 8888876642 4799999999874422399998421
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.....+++.+.+.|+|||.|++.+...
T Consensus 268 ---~~~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 268 ---KFAHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp ---TTGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred ---HhHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 112378999999999999999977643
No 256
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.28 E-value=3.2e-06 Score=74.43 Aligned_cols=107 Identities=9% Similarity=-0.020 Sum_probs=67.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehh-hHHHhCCCC----CCCeEEeccCCC-CCCC--C
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLP-HVLANAPSF----PGVEHVGGDMFE-NVPR--G 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p-~~~~~a~~~----~rv~~~~~D~~~-~~p~--~ 266 (370)
+.++.+... +++..+|||+|||+|.++...++..+..+++++|+. +........ .++.....++.. .++. .
T Consensus 63 L~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 141 (277)
T 3evf_A 63 LRWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKC 141 (277)
T ss_dssp HHHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCc
Confidence 455666543 677789999999999999988876555566666652 221111111 133444454422 3333 3
Q ss_pred CEEEeccccc---CCChh-HHHHHHHHHHHhCCCC-cEEEE
Q 017495 267 DAIFLKWMLH---GWTDE-HCLKLLKNCWEALPEN-GKVII 302 (370)
Q Consensus 267 D~i~~~~vLh---~~~d~-~~~~iL~~~~~~L~pg-G~lli 302 (370)
|+|++....+ ++.|. ....+|+-+.+.|+|| |.+++
T Consensus 142 DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 142 DTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 9999977555 12222 2235689999999999 99998
No 257
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.26 E-value=3.2e-07 Score=86.56 Aligned_cols=99 Identities=18% Similarity=0.098 Sum_probs=72.2
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------C--CCeEEeccCCCCC------CCC-CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------P--GVEHVGGDMFENV------PRG-DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~--rv~~~~~D~~~~~------p~~-D~i 269 (370)
.+..+|||+|||+|.++..+++.. ..+++++|. +.+++.++++ . +++++.+|+++.. ... |+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 456799999999999999999852 348999998 8888877642 2 7899999987621 123 999
Q ss_pred Eecccc-----cCCCh--hHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 270 FLKWML-----HGWTD--EHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 270 ~~~~vL-----h~~~d--~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
++.--. ++..+ .....+++.+.+.|+|||.|++...
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 983221 11111 2344688899999999999988654
No 258
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.26 E-value=1.9e-06 Score=76.92 Aligned_cols=91 Identities=13% Similarity=0.060 Sum_probs=66.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC---CCCCeEEeccCCC-CCCC--CC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS---FPGVEHVGGDMFE-NVPR--GD 267 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---~~rv~~~~~D~~~-~~p~--~D 267 (370)
...+++.+. ..+. +|||||||+|.++..|++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++. ..
T Consensus 36 ~~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 36 LRRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 445666665 6667 99999999999999999975 67888887 777776543 2579999999988 5553 23
Q ss_pred EEEecccccCCChhHHHHHHHH
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKN 289 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~ 289 (370)
.++..+.-++.+.+-...+|..
T Consensus 112 ~~iv~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SLLVANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEEEEECSSCCHHHHHHHHHH
T ss_pred cEEEecCcccccHHHHHHHhcC
Confidence 3455667777777655555544
No 259
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.26 E-value=9.1e-07 Score=83.31 Aligned_cols=110 Identities=17% Similarity=0.080 Sum_probs=80.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCC--------------------------------------CeEEE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPC--------------------------------------IKGIS 236 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 236 (370)
...++.... +.+..+|||++||+|.+++.++....+ .++++
T Consensus 184 Aa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 184 AAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 444555454 778899999999999999988776332 57999
Q ss_pred eeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC-CEEEecccccC-CC-hhHHHHHHHHHHHhCCC--CcEEEE
Q 017495 237 FDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG-DAIFLKWMLHG-WT-DEHCLKLLKNCWEALPE--NGKVII 302 (370)
Q Consensus 237 ~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~-D~i~~~~vLh~-~~-d~~~~~iL~~~~~~L~p--gG~lli 302 (370)
+|+ +.+++.++.+ +++++..+|+.+ +.+.. |+|+++--... +. .++...+.+.+.+.|++ |+.+.+
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 342 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYL 342 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 998 9999887753 368999999988 44443 99998433221 11 24566777877778876 888888
Q ss_pred Eee
Q 017495 303 VES 305 (370)
Q Consensus 303 ~e~ 305 (370)
+..
T Consensus 343 it~ 345 (385)
T 3ldu_A 343 ITS 345 (385)
T ss_dssp EES
T ss_pred EEC
Confidence 654
No 260
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.23 E-value=2.9e-06 Score=81.24 Aligned_cols=99 Identities=13% Similarity=0.180 Sum_probs=70.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC----
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP---- 264 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p---- 264 (370)
..+++.+. ..+..+|||+|||+|.++..+++. ..+++++|. +.+++.++++ .+++|+.+|+.+..+
T Consensus 276 ~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 276 ARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 34444444 556789999999999999999986 678999998 8888877642 479999999987322
Q ss_pred -C-C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 265 -R-G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 265 -~-~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
. . |+|++.- |...+..+++.+.+ ++|++.+++.
T Consensus 353 ~~~~fD~Vv~dP-----Pr~g~~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 353 AKNGFDKVLLDP-----ARAGAAGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp GTTCCSEEEECC-----CTTCCHHHHHHHHH-HCCSEEEEEE
T ss_pred hcCCCCEEEECC-----CCccHHHHHHHHHh-cCCCeEEEEE
Confidence 2 2 9998732 22112345555544 6888877763
No 261
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.23 E-value=6.7e-07 Score=82.47 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=70.6
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------------CCCeEEeccCCCCC------C
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------------PGVEHVGGDMFENV------P 264 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------------~rv~~~~~D~~~~~------p 264 (370)
+++.+||+||||+|..+..+++..+ .+++.+|+ |.+++.++++ ++++++.+|.++.. .
T Consensus 187 p~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~ 265 (364)
T 2qfm_A 187 YTGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 265 (364)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccC
Confidence 3578999999999999999998765 78999998 8888876532 16999999998721 2
Q ss_pred CC-CEEEecccc-c-CCChh--HHHHHHHHH----HHhCCCCcEEEEEe
Q 017495 265 RG-DAIFLKWML-H-GWTDE--HCLKLLKNC----WEALPENGKVIIVE 304 (370)
Q Consensus 265 ~~-D~i~~~~vL-h-~~~d~--~~~~iL~~~----~~~L~pgG~lli~e 304 (370)
+. |+|++.-.- . ..... -...+++.+ .++|+|||.+++.-
T Consensus 266 ~~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~qs 314 (364)
T 2qfm_A 266 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 314 (364)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCCCcEEEEEc
Confidence 33 999985421 1 00110 113555655 99999999998754
No 262
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.21 E-value=1.2e-06 Score=78.56 Aligned_cols=100 Identities=18% Similarity=0.154 Sum_probs=75.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-----------CCCCeEEeccCCCCC--C-CC-CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-----------FPGVEHVGGDMFENV--P-RG-DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~D~~~~~--p-~~-D~i 269 (370)
+.+++||=||+|.|..+..+++..+..+++.+|+ |.+++.+++ .+|++++.+|..+-. . +. |+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 4678999999999999999998777778999999 999887654 268999999998822 2 23 999
Q ss_pred EecccccCCChh--HHHHHHHHHHHhCCCCcEEEEEee
Q 017495 270 FLKWMLHGWTDE--HCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 270 ~~~~vLh~~~d~--~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
++-..=..-+.. -...+++.++++|+|||.++..-.
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence 874321100000 013789999999999999998543
No 263
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.21 E-value=5.5e-07 Score=85.32 Aligned_cols=98 Identities=18% Similarity=0.088 Sum_probs=73.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------C-CCeEEeccCCCCC------CCC-CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------P-GVEHVGGDMFENV------PRG-DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~-rv~~~~~D~~~~~------p~~-D~i 269 (370)
.+..+|||+|||+|.++..+++.. ..+++++|. +.+++.++++ . +++++.+|+++.. ... |+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 356799999999999999999864 458999998 8888776542 2 6889999987621 223 999
Q ss_pred Eeccc--------ccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 270 FLKWM--------LHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 270 ~~~~v--------Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
++.-- ++... .....++..+.+.|+|||.|++...
T Consensus 298 i~dpP~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGAC-RGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp EECCSSTTTCSSSSSCCC-THHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhHHHHHH-HHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 98521 11111 3457899999999999999998654
No 264
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.19 E-value=1.1e-06 Score=86.98 Aligned_cols=126 Identities=21% Similarity=0.175 Sum_probs=81.3
Q ss_pred hhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhcC---CCCCCeEEEEcCcccHHHHHHHhh---C-CCCeEEEeehhh
Q 017495 169 QFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRG---FDGLKVLVDVGGGIGVTLGMITSR---Y-PCIKGISFDLPH 241 (370)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~---~~~~~~vLDvG~G~G~~~~~l~~~---~-p~~~~~~~D~p~ 241 (370)
.|+-+++++-....|.+++.. .+.+.... ..+...|||||||+|-+....+++ . -.+++++++...
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred hhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 477778887666666665532 33332221 224468999999999884433333 2 234778898733
Q ss_pred HHHhCCC-------CCCCeEEeccCCC-CCCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEE
Q 017495 242 VLANAPS-------FPGVEHVGGDMFE-NVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVI 301 (370)
Q Consensus 242 ~~~~a~~-------~~rv~~~~~D~~~-~~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~ll 301 (370)
+...+++ .++|+++.+|+.+ ..|+. |+|++-..=+.+.-+-...+|....+.|||||.++
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 4333332 2689999999999 77876 99987443333323334567888889999999864
No 265
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.15 E-value=3.4e-06 Score=80.40 Aligned_cols=90 Identities=17% Similarity=0.083 Sum_probs=66.6
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCCC-CEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPRG-DAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~~-D~i~~~~vLh~ 277 (370)
.+..+|||+|||+|.++..+++. ..+++++|. +.+++.++++ . ++++.+|+.+..+.. |+|++.---..
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 35679999999999999999985 458999998 8888877643 3 899999998844334 99998433222
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
.. ..+++.+. .|+|+|.+++.
T Consensus 366 ~~----~~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 366 LH----PRLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp SC----HHHHHHHH-HHCCSEEEEEE
T ss_pred hH----HHHHHHHH-hcCCCcEEEEE
Confidence 11 23555554 48999998885
No 266
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.15 E-value=1.4e-06 Score=88.30 Aligned_cols=96 Identities=15% Similarity=0.084 Sum_probs=72.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCCC--C-CCC-CEEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFEN--V-PRG-DAIFLKW 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~~--~-p~~-D~i~~~~ 273 (370)
+..+|||+|||+|.++..++... ..+++++|+ +.+++.++++ ++++++.+|+++. . ... |+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 56799999999999999988743 346999998 8888877642 3799999999872 2 223 9999843
Q ss_pred -----------cccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 274 -----------MLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 274 -----------vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+++. ......+++.+.++|+|||.|++...
T Consensus 618 P~f~~~~~~~~~~~~--~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 618 PTFSNSKRMEDAFDV--QRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CSBC-------CCBH--HHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCCccchhHHHH--HHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 1111 13456889999999999999997554
No 267
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.15 E-value=9.6e-07 Score=79.30 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=61.9
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCC--CeEEEeeh-hhHHHhCCCC--CCCeEEeccCCC-CCCC---
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPC--IKGISFDL-PHVLANAPSF--PGVEHVGGDMFE-NVPR--- 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-p~~~~~a~~~--~rv~~~~~D~~~-~~p~--- 265 (370)
...+++.+. ..+..+|||||||+|.++..|++..+. .+++++|+ +.+++.+++. .+++++.+|+.+ +++.
T Consensus 31 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~~~~ 109 (279)
T 3uzu_A 31 IDAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGSIAR 109 (279)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGGGSC
T ss_pred HHHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhHhcc
Confidence 345666665 667789999999999999999998654 45899998 8888777653 679999999987 5443
Q ss_pred ----CCEEEecccccCCCh
Q 017495 266 ----GDAIFLKWMLHGWTD 280 (370)
Q Consensus 266 ----~D~i~~~~vLh~~~d 280 (370)
..+.++.+.-++.+.
T Consensus 110 ~~~~~~~~vv~NlPY~iss 128 (279)
T 3uzu_A 110 PGDEPSLRIIGNLPYNISS 128 (279)
T ss_dssp SSSSCCEEEEEECCHHHHH
T ss_pred cccCCceEEEEccCccccH
Confidence 124555555555443
No 268
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.10 E-value=3.1e-06 Score=74.99 Aligned_cols=84 Identities=11% Similarity=0.122 Sum_probs=61.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCC-CCCC---
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFE-NVPR--- 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~-~~p~--- 265 (370)
...++..+. ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 94 (255)
T 3tqs_A 18 LQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKT 94 (255)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhcc
Confidence 445666665 6677899999999999999999874 68999998 888776654 3689999999998 5442
Q ss_pred -CCEEEecccccCCChh
Q 017495 266 -GDAIFLKWMLHGWTDE 281 (370)
Q Consensus 266 -~D~i~~~~vLh~~~d~ 281 (370)
....+..+.-++.+.+
T Consensus 95 ~~~~~vv~NlPY~is~~ 111 (255)
T 3tqs_A 95 DKPLRVVGNLPYNISTP 111 (255)
T ss_dssp SSCEEEEEECCHHHHHH
T ss_pred CCCeEEEecCCcccCHH
Confidence 2233455555554443
No 269
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.10 E-value=4.5e-06 Score=73.80 Aligned_cols=90 Identities=11% Similarity=0.106 Sum_probs=63.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----CCCeEEeccCCC-CCCC---
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----PGVEHVGGDMFE-NVPR--- 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~-~~p~--- 265 (370)
...+++.+. ..+..+|||||||+|.++. +. +.+..+++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 455666665 6677899999999999999 64 444434999998 8888877653 479999999987 4432
Q ss_pred ---CCEEEecccccCCChhHHHHHH
Q 017495 266 ---GDAIFLKWMLHGWTDEHCLKLL 287 (370)
Q Consensus 266 ---~D~i~~~~vLh~~~d~~~~~iL 287 (370)
.+.+++.+.-++.+.+-..++|
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 2456666666666655444444
No 270
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.04 E-value=4.9e-06 Score=82.43 Aligned_cols=126 Identities=17% Similarity=0.069 Sum_probs=77.2
Q ss_pred hhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-------------CCCeEE
Q 017495 169 QFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-------------PCIKGI 235 (370)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~ 235 (370)
.|+-+++++-....|.+++.. .+.+......+...|||||||+|-++...+++. ...+++
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~-------al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy 450 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVG-------ALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY 450 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHH-------HHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred HHHHHcCChhhHHHHHHHHHH-------HHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence 355555555544555554432 222222211235689999999999975322221 234889
Q ss_pred Eeeh-hhHHHhCCC------CCCCeEEeccCCC-CC------CCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEE
Q 017495 236 SFDL-PHVLANAPS------FPGVEHVGGDMFE-NV------PRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKV 300 (370)
Q Consensus 236 ~~D~-p~~~~~a~~------~~rv~~~~~D~~~-~~------p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~l 300 (370)
+++. |.++...+. .++|+++.+|+.+ .. |+. |+|++-..=+....+-....|..+.+.|||||.+
T Consensus 451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~ 530 (745)
T 3ua3_A 451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTIS 530 (745)
T ss_dssp EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEE
T ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEE
Confidence 9997 543322211 2679999999998 55 444 9998866544333343456788888999999975
Q ss_pred E
Q 017495 301 I 301 (370)
Q Consensus 301 l 301 (370)
+
T Consensus 531 i 531 (745)
T 3ua3_A 531 I 531 (745)
T ss_dssp E
T ss_pred E
Confidence 5
No 271
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=97.97 E-value=0.00016 Score=66.28 Aligned_cols=143 Identities=14% Similarity=0.079 Sum_probs=102.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeehhhHHHhCCC-----------------------------CCCCeEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDLPHVLANAPS-----------------------------FPGVEHVG 256 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~p~~~~~a~~-----------------------------~~rv~~~~ 256 (370)
+...|+-+|||.=.....+... .++++++-+|+|++++..++ .++..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4679999999999988888775 36789999999998774321 25688999
Q ss_pred ccCCC--C---------CCC-C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhh
Q 017495 257 GDMFE--N---------VPR-G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQ 323 (370)
Q Consensus 257 ~D~~~--~---------~p~-~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~ 323 (370)
.|+.+ . +.. . =++++-.+|.+++.+++.++|+.+.+..+ +|.+++.|.+.+++ .+...+
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d-------~fg~~M 241 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGD-------RFGQIM 241 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTS-------HHHHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCC-------HHHHHH
Confidence 99976 1 121 2 57788889999999999999999999875 56777789886542 111111
Q ss_pred hhHHhhhcCCC------cccCHHHHHHHHHhCCCCcceEEec
Q 017495 324 DLFMLAQTTGG------RERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 324 d~~~~~~~~~~------~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
--.+ . ..|- ...+.++..+.|.++||+.+++..+
T Consensus 242 ~~~l-~-~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 242 IENL-R-RRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHH-H-TTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHH-H-HhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 1011 0 1111 2247788899999999999877654
No 272
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=97.96 E-value=1.2e-05 Score=70.79 Aligned_cols=112 Identities=17% Similarity=0.063 Sum_probs=70.2
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCe-EEec-cCCCCCCC
Q 017495 193 LVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVE-HVGG-DMFENVPR 265 (370)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~-~~~~-D~~~~~p~ 265 (370)
+-+.++.+.+. +.+..+|||+|||+|.++...++..+-.+++++|+ ......+.. ..++. +... |+..-.+.
T Consensus 77 fKL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~ 155 (282)
T 3gcz_A 77 AKLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVI 155 (282)
T ss_dssp HHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCC
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCC
Confidence 34566777764 77888999999999999998887766667788886 332222221 01222 3222 33221122
Q ss_pred -CCEEEecccccC---CChh-HHHHHHHHHHHhCCCC--cEEEEEee
Q 017495 266 -GDAIFLKWMLHG---WTDE-HCLKLLKNCWEALPEN--GKVIIVES 305 (370)
Q Consensus 266 -~D~i~~~~vLh~---~~d~-~~~~iL~~~~~~L~pg--G~lli~e~ 305 (370)
.|+|++-...+. +.|+ ....+|+-+...|+|| |.+++--+
T Consensus 156 ~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 156 PGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 399999766651 1122 2235688889999999 99988433
No 273
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=97.94 E-value=8.7e-06 Score=72.11 Aligned_cols=96 Identities=24% Similarity=0.201 Sum_probs=62.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhh-------CCC-----CeEEEeeh-h---hHHHh-----------CC------------
Q 017495 207 GLKVLVDVGGGIGVTLGMITSR-------YPC-----IKGISFDL-P---HVLAN-----------AP------------ 247 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-p---~~~~~-----------a~------------ 247 (370)
+..+|||||+|+|..+..+++. .|+ ++++.++. | +.+.. ++
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999998887664 574 57888886 5 22111 10
Q ss_pred --------CCCCCeEEeccCCC---CCCC----C-CEEEecc-cccCCChhHHHHHHHHHHHhCCCCcEEEE
Q 017495 248 --------SFPGVEHVGGDMFE---NVPR----G-DAIFLKW-MLHGWTDEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 248 --------~~~rv~~~~~D~~~---~~p~----~-D~i~~~~-vLh~~~d~~~~~iL~~~~~~L~pgG~lli 302 (370)
...+++++.+|+.+ ..+. . |+|++-- .-..-++---..+|+.+++.|+|||.|+.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 11357789999866 2222 3 9998842 11111110124789999999999999885
No 274
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=97.86 E-value=1e-05 Score=73.27 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=60.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-C--CC-
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-N--VP- 264 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~--~p- 264 (370)
...++..+. ..+..+|||+|||+|..+..+++.+|+.+++++|. +.+++.++++ ++++++.+|+.+ + .+
T Consensus 15 l~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 15 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 345555555 56778999999999999999999999889999998 8888876542 589999999865 2 11
Q ss_pred ---CC-CEEEecc
Q 017495 265 ---RG-DAIFLKW 273 (370)
Q Consensus 265 ---~~-D~i~~~~ 273 (370)
.. |.|++..
T Consensus 94 ~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 94 LGIEKVDGILMDL 106 (301)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCCCEEEEcC
Confidence 23 8887643
No 275
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.78 E-value=4e-05 Score=77.63 Aligned_cols=110 Identities=11% Similarity=-0.038 Sum_probs=75.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC------------------------------------------CCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY------------------------------------------PCI 232 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~------------------------------------------p~~ 232 (370)
+..++.... +.+..+|||.+||+|.+++..+... +..
T Consensus 179 Aa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 179 AAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 445555554 7788899999999999999877642 336
Q ss_pred eEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCC--C-C-CEEEec--ccccCCChhHHHHHHHHHH---HhC
Q 017495 233 KGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVP--R-G-DAIFLK--WMLHGWTDEHCLKLLKNCW---EAL 294 (370)
Q Consensus 233 ~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p--~-~-D~i~~~--~vLh~~~d~~~~~iL~~~~---~~L 294 (370)
+++++|+ +.+++.++.+ +.+++..+|+.+ ..| . . |+|+++ +-...-.+++...+.+.+. +.+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence 7999998 9998887653 358999999987 223 2 3 999986 3221112334455555444 444
Q ss_pred CCCcEEEEEee
Q 017495 295 PENGKVIIVES 305 (370)
Q Consensus 295 ~pgG~lli~e~ 305 (370)
.|||+++++..
T Consensus 338 ~~g~~~~ilt~ 348 (703)
T 3v97_A 338 FGGWNLSLFSA 348 (703)
T ss_dssp CTTCEEEEEES
T ss_pred CCCCeEEEEeC
Confidence 58999999755
No 276
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=97.76 E-value=1.1e-05 Score=75.47 Aligned_cols=88 Identities=11% Similarity=0.064 Sum_probs=63.1
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCC---CC-------------
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFEN---VP------------- 264 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~---~p------------- 264 (370)
..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ ++++++.+|+.+. .+
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 4689999999999999998743 58999998 8888877642 4789999998651 11
Q ss_pred --CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 265 --RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 265 --~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.. |+|++. -|. ..+...+.+.|+|+|+++.+..
T Consensus 292 ~~~~fD~Vv~d-----PPr---~g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 292 KSYQCETIFVD-----PPR---SGLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp GGCCEEEEEEC-----CCT---TCCCHHHHHHHTTSSEEEEEES
T ss_pred ccCCCCEEEEC-----cCc---cccHHHHHHHHhCCCEEEEEEC
Confidence 13 888763 111 1234556667778898887653
No 277
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=97.75 E-value=2.3e-05 Score=73.45 Aligned_cols=92 Identities=12% Similarity=0.016 Sum_probs=69.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---------------------CCCeEEeccCCCC--
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---------------------PGVEHVGGDMFEN-- 262 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---------------------~rv~~~~~D~~~~-- 262 (370)
+..+|||+|||+|..+..++++.+..+++++|. +..++.++++ .+++++.+|..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 367999999999999999999988889999998 8777665431 1278899998652
Q ss_pred -CCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 263 -VPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 263 -~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
.+.. |+|++.- .. + ...+|..+.+.|+|||.|++.-
T Consensus 127 ~~~~~fD~I~lDP-~~--~---~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-FG--S---PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-SS--C---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC-CC--C---HHHHHHHHHHhcCCCCEEEEEe
Confidence 2233 9988532 11 1 2478999999999999877753
No 278
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=97.73 E-value=7e-05 Score=68.17 Aligned_cols=102 Identities=16% Similarity=0.110 Sum_probs=68.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CC--C--CC-CEEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NV--P--RG-DAIF 270 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~--p--~~-D~i~ 270 (370)
..+..+|||+|||+|..+.++++.. +..+++++|. +..++.++++ .+++++.+|+.+ .. + .. |.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 5567899999999999999999875 5578999998 7777765532 478999999876 21 1 22 9998
Q ss_pred ec------ccccCCCh---------hHH-------HHHHHHHHHhCCCCcEEEEEeecC
Q 017495 271 LK------WMLHGWTD---------EHC-------LKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 271 ~~------~vLh~~~d---------~~~-------~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
+. .++...+| ++. .++|+.+.+.++ ||+|+......
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 61 12221111 111 257888877776 89887765543
No 279
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=97.72 E-value=4.3e-05 Score=67.75 Aligned_cols=99 Identities=16% Similarity=0.195 Sum_probs=67.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-h-------hHHHhCCCC-------CCCeEEeccCCCC---CC--
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-P-------HVLANAPSF-------PGVEHVGGDMFEN---VP-- 264 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p-------~~~~~a~~~-------~rv~~~~~D~~~~---~p-- 264 (370)
..+..+|||+|||+|..+..+++. +.+++++|. + .+++.++++ ++++++.+|+.+. ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 345579999999999999999985 568999998 8 777766543 4699999998762 33
Q ss_pred -CC-CEEEecccccCCC------------------hhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 265 -RG-DAIFLKWMLHGWT------------------DEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 265 -~~-D~i~~~~vLh~~~------------------d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.. |+|++.-.+++-. +.+...+++.+.++.+. ++++-.+..
T Consensus 159 ~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~--~vvvk~p~~ 219 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKK--RVVVKRPRL 219 (258)
T ss_dssp HCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSS--EEEEEEETT
T ss_pred CCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCc--EEEEEcCCC
Confidence 33 9999965554421 12234566666666543 566655543
No 280
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.67 E-value=0.00017 Score=66.55 Aligned_cols=96 Identities=14% Similarity=0.006 Sum_probs=67.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCCCeEEeccCCCCCC-CC--CEEEecccccCCChh
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFENVP-RG--DAIFLKWMLHGWTDE 281 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~~p-~~--D~i~~~~vLh~~~d~ 281 (370)
+.+..++||+||++|.++..++++ +.+++++|...+.......++|++..+|.+...| .. |+|++-.+.+ ..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence 467899999999999999999986 5799999974333333445789999999998434 33 9999987764 33
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEee
Q 017495 282 HCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 282 ~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
....++.+.......++.++....
T Consensus 284 ~~~~l~~~wl~~~~~~~aI~~lKL 307 (375)
T 4auk_A 284 KVAALMAQWLVNGWCRETIFNLKL 307 (375)
T ss_dssp HHHHHHHHHHHTTSCSEEEEEEEC
T ss_pred HhHHHHHHHHhccccceEEEEEEe
Confidence 444555554444444565555444
No 281
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.66 E-value=0.0002 Score=63.51 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=66.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCC-CeEEec-cCCCCCCC-C
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPG-VEHVGG-DMFENVPR-G 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~r-v~~~~~-D~~~~~p~-~ 266 (370)
+.++.+. .-+.+..+|||+||++|.++..+++..+-.+++++|+ ......... ..+ +.+..+ |+..-.+. .
T Consensus 70 L~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~ 148 (300)
T 3eld_A 70 IRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPS 148 (300)
T ss_dssp HHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCc
Confidence 4455555 3256788999999999999999998766556778886 221111110 011 223322 33332222 3
Q ss_pred CEEEecccccCCC----hh-HHHHHHHHHHHhCCCC-cEEEEEee
Q 017495 267 DAIFLKWMLHGWT----DE-HCLKLLKNCWEALPEN-GKVIIVES 305 (370)
Q Consensus 267 D~i~~~~vLh~~~----d~-~~~~iL~~~~~~L~pg-G~lli~e~ 305 (370)
|+|++....+ -. |. ....+|+-+...|+|| |.+++--+
T Consensus 149 DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF 192 (300)
T 3eld_A 149 DTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVL 192 (300)
T ss_dssp SEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEES
T ss_pred CEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 9999865554 11 11 1235688889999999 99998433
No 282
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.63 E-value=3.8e-05 Score=75.47 Aligned_cols=109 Identities=15% Similarity=0.110 Sum_probs=74.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC------------------CCeEEEeeh-hhHHHhCCC------CC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP------------------CIKGISFDL-PHVLANAPS------FP 250 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~-p~~~~~a~~------~~ 250 (370)
..+++.+. .....+|+|.+||+|.++..+.+... ...++++|+ +.++..++. ..
T Consensus 159 ~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~ 237 (541)
T 2ar0_A 159 KTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 237 (541)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 33444444 44567999999999999988876532 247899998 777776542 12
Q ss_pred C-----CeEEeccCCC-C-CC--CCCEEEecccccCCC------------hhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 251 G-----VEHVGGDMFE-N-VP--RGDAIFLKWMLHGWT------------DEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 251 r-----v~~~~~D~~~-~-~p--~~D~i~~~~vLh~~~------------d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
. +.+..+|.+. + .+ ..|+|+++--+.... ...-..++..+.+.|+|||++.++-+
T Consensus 238 ~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 238 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 2 7899999887 3 22 239999854332211 11124789999999999999998754
No 283
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=97.59 E-value=1.7e-05 Score=90.57 Aligned_cols=142 Identities=15% Similarity=0.070 Sum_probs=65.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCC-----CeEEEeeh-hhHHHhCCCC-C--CCeEEeccCCCC---CCCC-CEEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPC-----IKGISFDL-PHVLANAPSF-P--GVEHVGGDMFEN---VPRG-DAIFLKW 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-p~~~~~a~~~-~--rv~~~~~D~~~~---~p~~-D~i~~~~ 273 (370)
+..+||+||+|+|..+..+++.... .+++..|. +...+.+++. . .+.....|..++ .+.. |+|+..+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 4679999999999887777766532 25677776 5555555543 1 122222233222 2233 9999999
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCc
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSG 353 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 353 (370)
+||.-+ +....|+++++.|+|||+|++.+...... +.......-..........+.++|.++|+++||+.
T Consensus 1320 vl~~t~--~~~~~l~~~~~lL~p~G~l~~~e~~~~~~--------~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~~ 1389 (2512)
T 2vz8_A 1320 ALATLG--DPAVAVGNMAATLKEGGFLLLHTLLAGHP--------LGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHL 1389 (2512)
T ss_dssp C----------------------CCEEEEEEC----------------------------------CTTTTSSTTTTEEE
T ss_pred cccccc--cHHHHHHHHHHhcCCCcEEEEEecccccc--------ccccccccccccccCCcccCHHHHHHHHHhCCCce
Confidence 999644 44678999999999999999988643110 00000000000000122346778999999999998
Q ss_pred ceEEe
Q 017495 354 LEIVC 358 (370)
Q Consensus 354 v~~~~ 358 (370)
+....
T Consensus 1390 ~~~~~ 1394 (2512)
T 2vz8_A 1390 VALKR 1394 (2512)
T ss_dssp EEEEE
T ss_pred eeecc
Confidence 76543
No 284
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=97.58 E-value=0.00029 Score=61.17 Aligned_cols=110 Identities=14% Similarity=0.071 Sum_probs=64.9
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCC-eEEEeeh-hhH-HHhCCCC-CCC---eEEec-cCCCCCCC
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCI-KGISFDL-PHV-LANAPSF-PGV---EHVGG-DMFENVPR 265 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~-~~~a~~~-~rv---~~~~~-D~~~~~p~ 265 (370)
-+.++.+..- +++..+|||+||+.|.++...++. .++ .+.+.++ .+. +...... ..+ .|..+ |+++..+.
T Consensus 61 KL~EIdeK~l-ikpg~~VVDLGaAPGGWSQvAa~~-~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~ 138 (269)
T 2px2_A 61 KLRWLVERRF-VQPIGKVVDLGCGRGGWSYYAATM-KNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSE 138 (269)
T ss_dssp HHHHHHHTTS-CCCCEEEEEETCTTSHHHHHHTTS-TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSCCC
T ss_pred HHHHHHHcCC-CCCCCEEEEcCCCCCHHHHHHhhh-cCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCCCC
Confidence 3556666653 788999999999999999988875 222 2223333 110 1111111 345 44447 99874443
Q ss_pred -CCEEEeccccc---CCChhH-HHHHHHHHHHhCCCCc-EEEEEee
Q 017495 266 -GDAIFLKWMLH---GWTDEH-CLKLLKNCWEALPENG-KVIIVES 305 (370)
Q Consensus 266 -~D~i~~~~vLh---~~~d~~-~~~iL~~~~~~L~pgG-~lli~e~ 305 (370)
.|+|++-..-. ...|.. ...+|.-+.+.|+||| .+++=-+
T Consensus 139 ~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 139 ISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 49998854321 111111 1236777889999999 8887333
No 285
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=97.58 E-value=3.3e-05 Score=72.52 Aligned_cols=92 Identities=13% Similarity=0.070 Sum_probs=70.4
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC-------CC-CeEEeccCCC--C-C-CCC-CEEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF-------PG-VEHVGGDMFE--N-V-PRG-DAIFL 271 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~-------~r-v~~~~~D~~~--~-~-p~~-D~i~~ 271 (370)
+..+|||++||+|.++..++.+.++ .+++.+|. +..++.++++ ++ ++++.+|..+ . . +.. |+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4679999999999999999998766 57899998 8888776642 34 8999999865 2 1 223 99988
Q ss_pred cccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 272 KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
.- +... ..+++.+.+.|+|||.|++..
T Consensus 132 DP--~g~~----~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP--FGTP----VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC--SSCC----HHHHHHHHHHEEEEEEEEEEE
T ss_pred CC--CcCH----HHHHHHHHHHhCCCCEEEEEe
Confidence 54 2111 368999999999999777755
No 286
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.47 E-value=0.00078 Score=57.57 Aligned_cols=113 Identities=14% Similarity=0.109 Sum_probs=74.1
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHh---CCCC--CCCeEEec-cCCCCCCC-
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLAN---APSF--PGVEHVGG-DMFENVPR- 265 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~---a~~~--~rv~~~~~-D~~~~~p~- 265 (370)
-+.++.+.+. +.+..+|||+||++|.++...+....-.+++++|+ +.-.+. .+.+ +-|+|..+ |++.-.|.
T Consensus 66 KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~ 144 (267)
T 3p8z_A 66 KLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEK 144 (267)
T ss_dssp HHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCC
T ss_pred HHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcc
Confidence 3556777664 77888999999999999998877765557899997 332221 1112 56899999 97652223
Q ss_pred CCEEEecccccCCC---hh-HHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 266 GDAIFLKWMLHGWT---DE-HCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 266 ~D~i~~~~vLh~~~---d~-~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
.|+|+|--.=..-+ |+ ....+|.-+.+.|++ |.+++ .-+.+.
T Consensus 145 ~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~-KVl~py 190 (267)
T 3p8z_A 145 CDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI-KVLNPY 190 (267)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE-EESCCC
T ss_pred ccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE-EEccCC
Confidence 49998854432211 11 113477777899999 77777 434333
No 287
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.32 E-value=0.00069 Score=68.34 Aligned_cols=100 Identities=11% Similarity=0.051 Sum_probs=67.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCC---CCeEEEeeh-hhHHHhC--C----C----C--CCCeEEeccCCCCC--C-CC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYP---CIKGISFDL-PHVLANA--P----S----F--PGVEHVGGDMFENV--P-RG 266 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~D~-p~~~~~a--~----~----~--~rv~~~~~D~~~~~--p-~~ 266 (370)
....+|+|.|||+|.++..+++..+ ..+++++|+ +.+++.+ + . + ....+...|+..+. + ..
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 4568999999999999999998876 357899998 7766655 1 1 1 22356666666521 2 22
Q ss_pred -CEEEec--ccccCCChhH-------------------------HHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 -DAIFLK--WMLHGWTDEH-------------------------CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 -D~i~~~--~vLh~~~d~~-------------------------~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|+|+++ ++.....+.. ...+++.+.+.|+|||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 999883 2221111111 23578899999999999998654
No 288
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=97.29 E-value=0.0014 Score=57.87 Aligned_cols=107 Identities=11% Similarity=0.124 Sum_probs=70.3
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHh---CCCC--CCCeEEec-cCCCCCCC-
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLAN---APSF--PGVEHVGG-DMFENVPR- 265 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~---a~~~--~rv~~~~~-D~~~~~p~- 265 (370)
-+.++.+.+. +.+..+|||+||++|.++...+....-.+++++|+ ..-.+. .++. .-|.+.++ |++.-.|.
T Consensus 82 KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~ 160 (321)
T 3lkz_A 82 KLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSEC 160 (321)
T ss_dssp HHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCC
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCC
Confidence 3556666655 77778999999999999997777655557899997 321111 1111 23788888 87652233
Q ss_pred CCEEEecccccCCChhH-----HHHHHHHHHHhCCCC-cEEEE
Q 017495 266 GDAIFLKWMLHGWTDEH-----CLKLLKNCWEALPEN-GKVII 302 (370)
Q Consensus 266 ~D~i~~~~vLh~~~d~~-----~~~iL~~~~~~L~pg-G~lli 302 (370)
.|+|+|--. .--+.+. ...+|.-+.+.|++| |.++|
T Consensus 161 ~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 161 CDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp CSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 499888554 2222222 134777778999998 88887
No 289
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.28 E-value=0.00012 Score=71.73 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=71.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC---------------CCeEEEeeh-hhHHHhCCCC-------CC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP---------------CIKGISFDL-PHVLANAPSF-------PG 251 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p---------------~~~~~~~D~-p~~~~~a~~~-------~r 251 (370)
...+++.+. . ...+|+|.+||+|.++..+.+... ...++++|+ +.++..++.. .+
T Consensus 234 v~lmv~ll~-p-~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~ 311 (544)
T 3khk_A 234 VTLIVEMLE-P-YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFN 311 (544)
T ss_dssp HHHHHHHHC-C-CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCB
T ss_pred HHHHHHHHh-c-CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence 344444443 2 234999999999999988765432 467899998 7777766531 23
Q ss_pred CeEEeccCCC-C-CCC-C-CEEEec--ccccCCChh-------------------------HHHHHHHHHHHhCCCCcEE
Q 017495 252 VEHVGGDMFE-N-VPR-G-DAIFLK--WMLHGWTDE-------------------------HCLKLLKNCWEALPENGKV 300 (370)
Q Consensus 252 v~~~~~D~~~-~-~p~-~-D~i~~~--~vLh~~~d~-------------------------~~~~iL~~~~~~L~pgG~l 300 (370)
+.+..+|.+. + .+. . |+|+++ +....|..+ .-..+++.+.+.|+|||++
T Consensus 312 i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ 391 (544)
T 3khk_A 312 FGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSM 391 (544)
T ss_dssp CCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEE
T ss_pred cceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceE
Confidence 5558888876 3 222 2 999984 222112111 1126899999999999999
Q ss_pred EEEee
Q 017495 301 IIVES 305 (370)
Q Consensus 301 li~e~ 305 (370)
.++-+
T Consensus 392 aiVlP 396 (544)
T 3khk_A 392 ALLLA 396 (544)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88643
No 290
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.25 E-value=0.0027 Score=50.24 Aligned_cols=85 Identities=16% Similarity=0.074 Sum_probs=57.3
Q ss_pred CCCCeEEEEcCccc-HHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCC----CCCEEEecccccCCC
Q 017495 206 DGLKVLVDVGGGIG-VTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVP----RGDAIFLKWMLHGWT 279 (370)
Q Consensus 206 ~~~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p----~~D~i~~~~vLh~~~ 279 (370)
....+|||||||.| ..+..|++. .+..++++|+ |..+ .++..|++++.. ..|+|...+-
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av---------~~v~dDiF~P~~~~Y~~~DLIYsirP----- 98 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHG---------GIVRDDITSPRMEIYRGAALIYSIRP----- 98 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSST---------TEECCCSSSCCHHHHTTEEEEEEESC-----
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCcccc---------ceEEccCCCCcccccCCcCEEEEcCC-----
Confidence 35679999999999 588888864 4678999997 6543 299999999655 2399976543
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 280 DEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 280 d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
+++....|.++.+.. |.-++|.-...
T Consensus 99 P~El~~~i~~lA~~v--~adliI~pL~~ 124 (153)
T 2k4m_A 99 PAEIHSSLMRVADAV--GARLIIKPLTG 124 (153)
T ss_dssp CTTTHHHHHHHHHHH--TCEEEEECBTT
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 334444444444443 45666654433
No 291
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.23 E-value=0.00093 Score=65.40 Aligned_cols=98 Identities=17% Similarity=0.156 Sum_probs=70.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhC---CCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCC-CCC---C-C-CE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRY---PCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFE-NVP---R-G-DA 268 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~-~~p---~-~-D~ 268 (370)
...+|+|.+||+|.++..+.+.. +...++++|+ +.+...++.+ +++.+..+|.+. ++| . . |+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 56799999999999999998875 3678999998 7777666531 356899999987 333 2 2 99
Q ss_pred EEecccc-cCC------------------C---hhHHHHHHHHHHHhCC-CCcEEEEEee
Q 017495 269 IFLKWML-HGW------------------T---DEHCLKLLKNCWEALP-ENGKVIIVES 305 (370)
Q Consensus 269 i~~~~vL-h~~------------------~---d~~~~~iL~~~~~~L~-pgG~lli~e~ 305 (370)
|+++==+ ..| + ..+ ..++..+.+.|+ |||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEEEEec
Confidence 9974110 111 1 111 258999999999 9999988654
No 292
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.22 E-value=0.00019 Score=66.47 Aligned_cols=96 Identities=16% Similarity=0.067 Sum_probs=69.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------------CCCeEEeccCCCCC------CC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------------PGVEHVGGDMFENV------PR 265 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------------~rv~~~~~D~~~~~------p~ 265 (370)
++.+||=||+|.|..+.++++. |..+++.+|+ |.+++.++++ +|++++.+|...-. ..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4689999999999999999875 5578999999 9998876531 46889999986511 12
Q ss_pred -CCEEEeccccc-------CCChh-HHHHHHHHHHHhCCCCcEEEEE
Q 017495 266 -GDAIFLKWMLH-------GWTDE-HCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 266 -~D~i~~~~vLh-------~~~d~-~~~~iL~~~~~~L~pgG~lli~ 303 (370)
.|+|+.--.=. ..... -...+++.++++|+|||.++..
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 29998752211 10111 1257899999999999998864
No 293
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.20 E-value=0.0001 Score=65.07 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=51.7
Q ss_pred CCCC--CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhH-------HHhCCC-------C-CCCeEEeccCCC---CC
Q 017495 205 FDGL--KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHV-------LANAPS-------F-PGVEHVGGDMFE---NV 263 (370)
Q Consensus 205 ~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~-------~~~a~~-------~-~rv~~~~~D~~~---~~ 263 (370)
.++. .+|||+|||+|..+..++.+ +.+++++|. +.+ ++.++. . .+++++.+|..+ ..
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~ 161 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC
Confidence 4455 79999999999999999997 457999998 643 332221 1 368999999876 23
Q ss_pred CCC-CEEEecccccC
Q 017495 264 PRG-DAIFLKWMLHG 277 (370)
Q Consensus 264 p~~-D~i~~~~vLh~ 277 (370)
+.. |+|++.-..++
T Consensus 162 ~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 162 TPRPQVVYLDPMFPH 176 (258)
T ss_dssp SSCCSEEEECCCCCC
T ss_pred cccCCEEEEcCCCCC
Confidence 334 99999766655
No 294
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=97.15 E-value=0.0014 Score=58.43 Aligned_cols=123 Identities=14% Similarity=0.064 Sum_probs=82.8
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhC-----CCCeEEEeeh-hhH--------------------------HHhCCC-----
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRY-----PCIKGISFDL-PHV--------------------------LANAPS----- 248 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-p~~--------------------------~~~a~~----- 248 (370)
..+.+|||+|+..|..+..++... ++.+++++|. ... ++.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 456899999999999999887664 4778999883 110 111111
Q ss_pred ---CCCCeEEeccCCCC---CCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhh
Q 017495 249 ---FPGVEHVGGDMFEN---VPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIV 320 (370)
Q Consensus 249 ---~~rv~~~~~D~~~~---~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~ 320 (370)
.++|+++.||+.+. .+.. |+|++-.-.+ +.....|..+...|+|||.|++-+. .
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~DD~-~------------- 246 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIVDDY-M------------- 246 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEESSC-T-------------
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEEcCC-C-------------
Confidence 16799999999773 2222 8888765332 2356889999999999998887442 1
Q ss_pred hhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecC
Q 017495 321 FEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 321 ~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
+ + .| ..+.|.+.+++.|++. .+.++.
T Consensus 247 -~-------~--~G---~~~Av~Ef~~~~~i~~-~i~~~~ 272 (282)
T 2wk1_A 247 -M-------C--PP---CKDAVDEYRAKFDIAD-ELITID 272 (282)
T ss_dssp -T-------C--HH---HHHHHHHHHHHTTCCS-CCEECS
T ss_pred -C-------C--HH---HHHHHHHHHHhcCCce-EEEEec
Confidence 0 0 01 1457888889989774 455543
No 295
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=97.11 E-value=0.003 Score=57.31 Aligned_cols=143 Identities=11% Similarity=0.041 Sum_probs=94.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC---------CCCCeEEeccCCCCCC----------CC-
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS---------FPGVEHVGGDMFENVP----------RG- 266 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~---------~~rv~~~~~D~~~~~p----------~~- 266 (370)
+...||++|||-=.....+.. .++++++-+|.|.+++..++ ..+..++..|+.+.+. ..
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 180 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence 456899999998887666542 13589999999998876542 3568899999876211 11
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhc--------CCCcc-c
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQT--------TGGRE-R 337 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~~~-~ 337 (370)
=++++-.+||++++++...+|+.+.+.+.||+.|++ |.+.++.. .. ......... ..+... ..... +
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~-d~~~~~~~-~~-~~~~~~~~~-~~~~~~g~~~~~~l~~~~~~~ 256 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETSPLHGD-EW-REQMQLRFR-RVSDALGFEQAVDVQELIYHD 256 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECCCTTCS-HH-HHHHHHHHH-HHHC-----------CCTTCC
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE-EecCCCCc-ch-hHHHHHHHH-HHHHHcCCcCCCCccccccCC
Confidence 577888899999999999999999999999888776 44443321 00 000000000 001000 01112 2
Q ss_pred C-HHHHHHHHHhCCCCcc
Q 017495 338 S-KKEYEALAKNSGFSGL 354 (370)
Q Consensus 338 t-~~e~~~ll~~aGf~~v 354 (370)
+ .++..++|.++||+.+
T Consensus 257 ~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 257 ENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TTCCCHHHHHTTTTEEEE
T ss_pred CChHHHHHHHHHCcCccc
Confidence 5 7889999999999987
No 296
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.05 E-value=0.0018 Score=54.76 Aligned_cols=88 Identities=11% Similarity=0.044 Sum_probs=60.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC---------CCCCeEEeccCCCC--------------
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS---------FPGVEHVGGDMFEN-------------- 262 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---------~~rv~~~~~D~~~~-------------- 262 (370)
+..+||||||| ..+..+++ .++.+++.+|. ++..+.+++ .++|+++.+|..+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 46799999985 67777776 35789999986 666655542 34799999996431
Q ss_pred ----------CC--C-CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 263 ----------VP--R-GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 263 ----------~p--~-~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
.+ . .|+|++-.-. ....+..+.+.|+|||.|++-+
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEEETT
T ss_pred HHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEEEeC
Confidence 12 2 2999986421 1244556779999999985533
No 297
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=97.03 E-value=0.0036 Score=63.42 Aligned_cols=145 Identities=14% Similarity=0.103 Sum_probs=102.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCC--------CCeEEEeehhhHHHhCCCC-----------------------------
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYP--------CIKGISFDLPHVLANAPSF----------------------------- 249 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~p~~~~~a~~~----------------------------- 249 (370)
+...|+-+|||.=....+|...+| +++++-+|+|++++..++.
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 467999999999999999988755 7888999999887643210
Q ss_pred -CCCeEEeccCCCC--C----------CCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCC
Q 017495 250 -PGVEHVGGDMFEN--V----------PRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQ 314 (370)
Q Consensus 250 -~rv~~~~~D~~~~--~----------p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~ 314 (370)
++..++..|+.+. + ... -++++-.+|.+++.+++.++|+.+.+ + |+|.+++.|.+.+..+..
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d- 263 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFE- 263 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTS-
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCC-
Confidence 3688999999872 1 222 56778889999999999999999985 4 688999999887653222
Q ss_pred ccchhhhhhhhHHhhhcCC------CcccCHHHHHHHHHhCCCCcceEEec
Q 017495 315 ASSHIVFEQDLFMLAQTTG------GRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 315 ~~~~~~~~~d~~~~~~~~~------~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
.+...+- ..+.. .+ ....+.++..+.|.++||+.+....+
T Consensus 264 ---~f~~~m~-~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 264 ---PFSKQML-AHFKR-NDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp ---HHHHHHH-HHHHH-TTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred ---hHHHHHH-HHHHH-cCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 1222211 11110 01 12347899999999999987766543
No 298
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=96.92 E-value=0.00052 Score=64.60 Aligned_cols=64 Identities=25% Similarity=0.397 Sum_probs=50.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCCCCC-----CCCEEEe
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFENVP-----RGDAIFL 271 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~~~p-----~~D~i~~ 271 (370)
.+..+|||+|||+|..+..+++. ..+++++|. +.+++.++.+ ++++++.+|+.+..+ ..|+|++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 34689999999999999999886 468999998 8888776542 468999999987321 2399998
No 299
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.83 E-value=0.00076 Score=46.22 Aligned_cols=55 Identities=13% Similarity=0.231 Sum_probs=44.6
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecc
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAA 114 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~ 114 (370)
+..|++.|... +.|++..|||+.+|+ +...+.+.|..|...|+|...+ .++|+++
T Consensus 12 ~~~IL~~L~~~-------~~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~~--------~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDD-------GGPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSPS--------PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHH-------CSCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEEE--------TTEEEEC
T ss_pred HHHHHHHHHHc-------CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecCC--------CceEeeC
Confidence 45688888764 137999999999999 9999999999999999987531 3677754
No 300
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=96.73 E-value=0.0018 Score=49.06 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=51.0
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHC--CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARL--PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~--~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
+..|++.|... ++.|+.+||+.+ ++ ++..+++.|+.|...|+|+.. | .+.|++|+.+.
T Consensus 15 d~~IL~~L~~~--------g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~------~--rg~Y~LT~~G~ 74 (111)
T 3b73_A 15 DDRILEIIHEE--------GNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL------A--NGVYVITEEGE 74 (111)
T ss_dssp HHHHHHHHHHH--------SCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC------S--TTCEEECHHHH
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec------C--CceEEECchHH
Confidence 45678888764 389999999999 99 999999999999999999963 1 35899999997
Q ss_pred hhh
Q 017495 119 FLI 121 (370)
Q Consensus 119 ~l~ 121 (370)
.+.
T Consensus 75 ~~l 77 (111)
T 3b73_A 75 AYL 77 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 301
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=96.63 E-value=0.0019 Score=57.15 Aligned_cols=64 Identities=27% Similarity=0.281 Sum_probs=51.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC--CCCCeEEeccCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS--FPGVEHVGGDMFE 261 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--~~rv~~~~~D~~~ 261 (370)
..+++..+. ..+...+||.+||.|..+..++++ +.+++++|. |.+++.+++ .+|++++.+|+.+
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 456666666 677889999999999999999997 679999998 888765542 1578898888865
No 302
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.57 E-value=0.0022 Score=47.85 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=48.8
Q ss_pred HHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecc
Q 017495 35 VLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAA 114 (370)
Q Consensus 35 ~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~ 114 (370)
+|.--.++.|+..|..+ +.++.|||+.+|+ ++..+++.|+.|...|+|...+ +|+ ...|+++
T Consensus 19 ~l~~~~r~~Il~~L~~~---------~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~----~g~-~~~y~l~ 80 (102)
T 3pqk_A 19 TLSHPVRLMLVCTLVEG---------EFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRR----NIK-QIFYRLT 80 (102)
T ss_dssp HHCSHHHHHHHHHHHTC---------CBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEEC----SSS-CCEEEEC
T ss_pred HcCCHHHHHHHHHHHhC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE----eCC-EEEEEEC
Confidence 33444556677777665 7999999999999 9999999999999999998642 232 3567776
Q ss_pred hh
Q 017495 115 PI 116 (370)
Q Consensus 115 ~~ 116 (370)
+.
T Consensus 81 ~~ 82 (102)
T 3pqk_A 81 EA 82 (102)
T ss_dssp SS
T ss_pred cH
Confidence 53
No 303
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.53 E-value=0.0016 Score=47.97 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=50.3
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
.++..-.++.|+..| .+ ++++.+||+.+++ ++..+++.|+.|...|++... .+.|.+
T Consensus 26 ~~l~~~~r~~Il~~L-~~---------~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~---------~g~y~l 82 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-DK---------GRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV---------GERWVV 82 (96)
T ss_dssp HHHSCHHHHHHHHHH-HT---------TCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEE
T ss_pred HHhCCHHHHHHHHHH-cC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE---------CCEEEE
Confidence 344455677788888 65 7999999999999 999999999999999999863 147888
Q ss_pred chhhh
Q 017495 114 APICK 118 (370)
Q Consensus 114 ~~~~~ 118 (370)
++.+.
T Consensus 83 ~~~g~ 87 (96)
T 1y0u_A 83 TDAGK 87 (96)
T ss_dssp CTTTC
T ss_pred CCCch
Confidence 77543
No 304
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.51 E-value=0.0024 Score=45.10 Aligned_cols=60 Identities=8% Similarity=0.009 Sum_probs=48.9
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcc-hHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPF-LLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~-~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
+-.|++.|... +|.|+.+||+.+|+ ... .+++.|..|...|+|+.. ..|+ -.|.+|+.+.
T Consensus 13 ~~~IL~~Lk~~--------g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~----~~gR--P~w~LT~~g~ 73 (79)
T 1xmk_A 13 KEKICDYLFNV--------SDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQ----GTTP--PIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHT--------CCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEE----CSSS--CEEEECHHHH
T ss_pred HHHHHHHHHHc--------CCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEec----CCCC--CCeEeCHhHH
Confidence 45577788776 48999999999999 888 999999999999999853 1232 3899998775
No 305
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.49 E-value=0.0032 Score=44.76 Aligned_cols=64 Identities=20% Similarity=0.303 Sum_probs=48.0
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
.+..|++.|... ||+.++|+.+||+++|+ +...+++.|..|...|+|... + ++ .+.|...+...
T Consensus 11 ~~~~IL~~L~~~-----~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~---g--~~-~~~W~i~~~~~ 74 (81)
T 1qbj_A 11 QEQRILKFLEEL-----GEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE---A--GT-PPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHHHHH-----CTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---S--SS-SCEEEEC----
T ss_pred HHHHHHHHHHHc-----CCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec---C--CC-CCeeEEeCcHH
Confidence 355578888776 55568999999999999 999999999999999999863 1 11 46777766543
No 306
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.42 E-value=0.0017 Score=48.06 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=49.8
Q ss_pred HHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecc
Q 017495 35 VLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAA 114 (370)
Q Consensus 35 ~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~ 114 (370)
++..-.++.|+..|..+ +.++.+||+.+|+ ++..+++.|+.|...|++... .+|+ ...|.++
T Consensus 19 ~l~~~~r~~Il~~L~~~---------~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~----~~g~-~~~y~l~ 80 (98)
T 3jth_A 19 AMANERRLQILCMLHNQ---------ELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTR----KEAQ-TVYYTLK 80 (98)
T ss_dssp HHCSHHHHHHHHHTTTS---------CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----CCTT-CCEEEEC
T ss_pred HcCCHHHHHHHHHHhcC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE----EeCC-EEEEEEC
Confidence 44445567778888765 8999999999999 999999999999999999864 2232 3457776
Q ss_pred hh
Q 017495 115 PI 116 (370)
Q Consensus 115 ~~ 116 (370)
+.
T Consensus 81 ~~ 82 (98)
T 3jth_A 81 SE 82 (98)
T ss_dssp CH
T ss_pred HH
Confidence 54
No 307
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.36 E-value=0.006 Score=47.75 Aligned_cols=89 Identities=8% Similarity=0.004 Sum_probs=61.6
Q ss_pred CCCChhHHHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-CCCCCCCcchHHHHHHH
Q 017495 10 NATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL-PTKNPDAPFLLDRMLSL 88 (370)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~ 88 (370)
+..+....-++..+++++.+-|...+|.. |..+ +.+..||++.+ ++ ++..|.+.|+.
T Consensus 6 ~~~~~~~~Cpi~~~l~~lg~kW~l~IL~~---------L~~g---------~~rf~eL~~~l~gI----s~~~Ls~~L~~ 63 (131)
T 4a5n_A 6 NIYPNKEGSPVEFTLDVIGGKWKGILFYH---------MIDG---------KKRFNEFRRICPSI----TQRMLTLQLRE 63 (131)
T ss_dssp -------CCHHHHHHHHHCSSSHHHHHHH---------HTTS---------CBCHHHHHHHCTTS----CHHHHHHHHHH
T ss_pred ccCCCCCCCcHHHHHHHHcCcCHHHHHHH---------HhcC---------CcCHHHHHHHhccc----CHHHHHHHHHH
Confidence 33333333367777888888777766653 3344 79999999999 99 99999999999
Q ss_pred HhcCCceeccccCCCCCccccceecchhhhhhhc
Q 017495 89 LASYDILRCSLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 89 L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
|+..|+|+... .+++ +....|.+|+.++.+..
T Consensus 64 Le~~GLV~R~~-~~~d-~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 64 LEADGIVHREV-YHQV-PPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp HHHTTSEEEEE-ECSS-SCEEEEEECTTGGGGHH
T ss_pred HHHCCCEEEEe-cCCC-CCeEEEEECHhHHHHHH
Confidence 99999999742 2222 11356999998876553
No 308
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=96.30 E-value=0.0065 Score=53.68 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=60.7
Q ss_pred CCCCCeEEEEcC------cccHHHHHHHhhCCC-CeEEEeehhhHHHhCCCCCCCeEEeccCCCCCC-CC-CEEEeccc-
Q 017495 205 FDGLKVLVDVGG------GIGVTLGMITSRYPC-IKGISFDLPHVLANAPSFPGVEHVGGDMFENVP-RG-DAIFLKWM- 274 (370)
Q Consensus 205 ~~~~~~vLDvG~------G~G~~~~~l~~~~p~-~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~~p-~~-D~i~~~~v- 274 (370)
.+...+|||+|+ ..|.+ .+.+..|. ..++.+|+.++...+ . .++.||+.+... .. |+|++-..
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCC
Confidence 356789999996 67773 34444776 689999984443221 1 558999766222 22 99887321
Q ss_pred ------ccCC--ChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 275 ------LHGW--TDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 275 ------Lh~~--~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
-..- ...-++.+|.=+.+.|+|||.|++=
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence 1111 1224778889999999999999983
No 309
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.29 E-value=0.0027 Score=48.77 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=51.2
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
.+|.--.++.|+..|..+ |.++.+||+.+|+ ++..+++.|+.|...|+|...+ +|+ ...|++
T Consensus 13 ~al~~~~R~~Il~~L~~~---------~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~----~gr-~~~y~l 74 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSRG---------PATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHK----QGR-VRTCAI 74 (118)
T ss_dssp HHHTSHHHHHHHHHHHTC---------CEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEE----ETT-EEEEEE
T ss_pred HHhCCHHHHHHHHHHHhC---------CCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEe----cCC-EEEEEE
Confidence 344445667777778765 8999999999999 9999999999999999998642 122 356777
Q ss_pred chhh
Q 017495 114 APIC 117 (370)
Q Consensus 114 ~~~~ 117 (370)
++..
T Consensus 75 ~~~~ 78 (118)
T 3f6o_A 75 EKEP 78 (118)
T ss_dssp CSHH
T ss_pred CHHH
Confidence 7654
No 310
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.21 E-value=0.0059 Score=45.95 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=43.2
Q ss_pred CCCHHHHHHHC-CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARL-PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.+..||++.+ ++ ++..+.+.|+.|...|+|+... ++.|++ ...|.+|+.++.+.
T Consensus 27 ~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~-~~~d~r-~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 27 KKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIV-YNQVPP-KVEYELSEYGRSLE 82 (107)
T ss_dssp CBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEE-ECSSSC-EEEEEECTTGGGGH
T ss_pred CCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEee-cCCCCC-eEEEEECccHHHHH
Confidence 79999999999 99 9999999999999999999742 222221 34588888775443
No 311
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.14 E-value=0.0062 Score=46.17 Aligned_cols=52 Identities=10% Similarity=0.041 Sum_probs=43.4
Q ss_pred CCC--HHHHHHHC-CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhhc
Q 017495 61 LLS--ASKIAARL-PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 61 ~~t--~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
+.+ +.||++.+ |+ ++..+.+.|+.|...|+|+... . ....|.+|+.++.+..
T Consensus 40 ~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~-~-----r~~~y~LT~~G~~l~~ 94 (111)
T 3df8_A 40 STRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRS-G-----QITTYALTEKGMNVRN 94 (111)
T ss_dssp SSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEE-S-----SSEEEEECHHHHHHHH
T ss_pred CCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEee-c-----CcEEEEECccHHHHHH
Confidence 677 99999999 99 9999999999999999999642 1 1467999998875553
No 312
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.00 E-value=0.0049 Score=47.62 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=50.6
Q ss_pred HHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCcccccee
Q 017495 33 PMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYG 112 (370)
Q Consensus 33 ~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~ 112 (370)
..+|.--.++.|+..|... ++.++.+||+.+|+ ++..+.+.|+.|...|++... .+|+ ...|+
T Consensus 36 ~~al~~~~rl~IL~~L~~~--------~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~----~~gr-~~~y~ 98 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD--------EELCVCDIANILGV----TIANASHHLRTLYKQGVVNFR----KEGK-LALYS 98 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS--------SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---------CCEEE
T ss_pred HHHhCCHHHHHHHHHHHHC--------CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE----EECC-EEEEE
Confidence 3455555678899999843 38999999999999 999999999999999999863 1222 24577
Q ss_pred cchh
Q 017495 113 AAPI 116 (370)
Q Consensus 113 ~~~~ 116 (370)
+++.
T Consensus 99 l~~~ 102 (122)
T 1u2w_A 99 LGDE 102 (122)
T ss_dssp ESCH
T ss_pred ECHH
Confidence 7654
No 313
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.00 E-value=0.0037 Score=50.33 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccc
Q 017495 31 VLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERV 110 (370)
Q Consensus 31 ~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~ 110 (370)
-...+|.--.++.|+..|..+ ++++.+||+.+++ ++..+.+.|+.|...|+|+..+ +|+ ...
T Consensus 50 ~~l~aL~~p~R~~IL~~L~~~---------~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~----~Gr-~~~ 111 (151)
T 3f6v_A 50 DQLEVAAEPTRRRLVQLLTSG---------EQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRK----DGR-FRY 111 (151)
T ss_dssp CHHHHHTSHHHHHHHHHGGGC---------CEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEE----ETT-EEE
T ss_pred HHHHHhCCHHHHHHHHHHHhC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEe----cCC-EEE
Confidence 345666677888899999865 8999999999999 9999999999999999998642 232 356
Q ss_pred eecchhhh
Q 017495 111 YGAAPICK 118 (370)
Q Consensus 111 y~~~~~~~ 118 (370)
|++++...
T Consensus 112 y~lt~~~~ 119 (151)
T 3f6v_A 112 YRLDPQGL 119 (151)
T ss_dssp EEECHHHH
T ss_pred EEEChHHH
Confidence 88887553
No 314
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=95.88 E-value=0.0068 Score=42.64 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=41.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..|++.|... |++.++|+.|||+++|+ +...+.+.|..|...|+|..
T Consensus 15 ~~~~IL~~L~~~-----~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~ 63 (77)
T 1qgp_A 15 QEQRILKFLEEL-----GEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQK 63 (77)
T ss_dssp HHHHHHHHHHHH-----CSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHc-----CCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence 356688888876 33347999999999999 99999999999999999985
No 315
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=95.87 E-value=0.0069 Score=45.89 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=47.4
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
-.++.|+..|..+ +.++.+||+.+++ ++..+.+.|+.|...|+|.... +|+ ...|.+++.+.
T Consensus 21 ~~r~~IL~~L~~~---------~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~----~gr-~~~y~l~~~~~ 82 (114)
T 2oqg_A 21 ETRWEILTELGRA---------DQSASSLATRLPV----SRQAIAKHLNALQACGLVESVK----VGR-EIRYRALGAEL 82 (114)
T ss_dssp HHHHHHHHHHHHS---------CBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEE----ETT-EEEEEECSHHH
T ss_pred hHHHHHHHHHHcC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEe----cCC-EEEEEechHHH
Confidence 3456677777544 7999999999999 9999999999999999998631 121 24477776553
No 316
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=95.84 E-value=0.0044 Score=47.57 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=49.7
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
.+|..-.++.|+..|..+ +.++.+||+.+|+ ++..+++.|+.|...|++...+ +|+ ...|.+
T Consensus 16 ~aL~~~~r~~IL~~L~~~---------~~~~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~----~gr-~~~y~l 77 (118)
T 2jsc_A 16 RALADPTRCRILVALLDG---------VCYPGQLAAHLGL----TRSNVSNHLSCLRGCGLVVATY----EGR-QVRYAL 77 (118)
T ss_dssp HHHSSHHHHHHHHHHHTT---------CCSTTTHHHHHSS----CHHHHHHHHHHHTTTTSEEEEE----CSS-SEEEEE
T ss_pred HHhCCHHHHHHHHHHHcC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEE----ECC-EEEEEE
Confidence 344444566777777765 7899999999999 9999999999999999998642 222 245777
Q ss_pred chh
Q 017495 114 API 116 (370)
Q Consensus 114 ~~~ 116 (370)
++.
T Consensus 78 ~~~ 80 (118)
T 2jsc_A 78 ADS 80 (118)
T ss_dssp SSH
T ss_pred ChH
Confidence 754
No 317
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=95.82 E-value=0.01 Score=54.83 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=71.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC------------CCCCCeEEeccCCC--C-CCCC-C
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP------------SFPGVEHVGGDMFE--N-VPRG-D 267 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~------------~~~rv~~~~~D~~~--~-~p~~-D 267 (370)
..++.+|||+.+|.|+=+.+++...++..++..|. +.-+...+ ...++.+...|... . .+.. |
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56778999999999999999999877767888886 44333221 11457788888765 1 2333 8
Q ss_pred EEEec----c----c-------ccCCChhHH-------HHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 268 AIFLK----W----M-------LHGWTDEHC-------LKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 268 ~i~~~----~----v-------Lh~~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.|++- . + .+.+...+. .++|.++.+.|||||+|+-......
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 88761 1 1 122222222 3789999999999999988776554
No 318
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.81 E-value=0.0099 Score=41.83 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=38.4
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
|.+.|... +.++++|||+.+++ ++.-++|.|..|+..|++.+.
T Consensus 7 Il~~L~~~--------g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR--------GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS--------CSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc--------CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 56777765 48999999999999 999999999999999999863
No 319
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=95.81 E-value=0.006 Score=44.86 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=50.0
Q ss_pred HHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecc
Q 017495 35 VLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAA 114 (370)
Q Consensus 35 ~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~ 114 (370)
++..-.++.|+..|..+ ++.|..+||+.+++ ++..+.+.|+.|...|++...+ +|+ ...|.++
T Consensus 20 ~l~~~~~~~il~~l~~~--------~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~~----~~r-~~~y~l~ 82 (99)
T 3cuo_A 20 AMSHPKRLLILCMLSGS--------PGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQR----DAQ-RILYSIK 82 (99)
T ss_dssp HHCSHHHHHHHHHHTTC--------CSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEE----CSS-CEEEEEC
T ss_pred HhCChHHHHHHHHHHhC--------CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEe----cCC-EEEEEEC
Confidence 33344566778888765 48999999999999 9999999999999999998642 222 3457776
Q ss_pred hhh
Q 017495 115 PIC 117 (370)
Q Consensus 115 ~~~ 117 (370)
+..
T Consensus 83 ~~~ 85 (99)
T 3cuo_A 83 NEA 85 (99)
T ss_dssp CHH
T ss_pred hHH
Confidence 544
No 320
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=95.80 E-value=0.014 Score=52.89 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=53.1
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCC--CCCCeEEeccCCC
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPS--FPGVEHVGGDMFE 261 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~--~~rv~~~~~D~~~ 261 (370)
.+.+++..+. ..+...++|..+|.|..+..+++.. |+.+++++|. |.+++.++. .+|++++.+++.+
T Consensus 45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 3567777776 6778899999999999999999985 7889999998 888887643 2466777666543
No 321
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.71 E-value=0.0095 Score=42.79 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=38.5
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
|.+.|... +.++++|||+.+++ ++..++|.|..|+..|+|.+.
T Consensus 7 Il~~L~~~--------g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQ--------GRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHS--------CSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHc--------CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 56777765 48999999999999 999999999999999999964
No 322
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.68 E-value=0.011 Score=44.73 Aligned_cols=79 Identities=13% Similarity=0.021 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-CCCCCCCcchHHHHHHHHhcCCceec
Q 017495 19 IGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL-PTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+...+++++.+.+...+| ..|..+ +.+..+||+.+ ++ ++..+.+.|+.|...|+|+.
T Consensus 11 ~~~~~l~~l~~~~~~~IL---------~~L~~~---------~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r 68 (112)
T 1z7u_A 11 SINLALSTINGKWKLSLM---------DELFQG---------TKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHR 68 (112)
T ss_dssp HHHHHHHTTCSTTHHHHH---------HHHHHS---------CBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEE
T ss_pred CHHHHHHHHcCccHHHHH---------HHHHhC---------CCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEE
Confidence 455555555555554443 344445 79999999999 99 99999999999999999997
Q ss_pred cccCCCCCccccceecchhhhhhh
Q 017495 98 SLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 98 ~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
.. ++.|+ ....|.+|+.++.+.
T Consensus 69 ~~-~~~d~-r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 69 ES-FNELP-PRVEYTLTPEGYALY 90 (112)
T ss_dssp EE-ECCSS-CEEEEEECHHHHHHH
T ss_pred ee-cCCCC-CeEEEEECHhHHHHH
Confidence 42 22222 134589998886544
No 323
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=95.66 E-value=0.011 Score=43.36 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=53.5
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
.++..-.++.|+..|... ++.+..+||+.+++ ++..+.+.|+.|...|++..... ..+++ ...|.+
T Consensus 11 ~~l~~~~~~~iL~~L~~~--------~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~-~~~~r-~~~~~l 76 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR--------RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKV-IADRP-RTVVEI 76 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH--------SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEE-CSSSC-EEEEEE
T ss_pred cccCChHHHHHHHHHHhc--------CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEec-CCCcc-eEEEEE
Confidence 455566677888888644 27999999999999 99999999999999999985311 11222 356888
Q ss_pred chhhh
Q 017495 114 APICK 118 (370)
Q Consensus 114 ~~~~~ 118 (370)
|+.+.
T Consensus 77 t~~g~ 81 (100)
T 1ub9_A 77 TDFGM 81 (100)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 88764
No 324
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.65 E-value=0.0074 Score=45.27 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=39.9
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
-.++.|+..|..+ +.++.+||+.+|+ ++..+.+.|+.|...|++...
T Consensus 26 ~~r~~IL~~L~~~---------~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 26 YNRIRIMELLSVS---------EASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp HHHHHHHHHHHHC---------CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 3445566667655 7999999999999 999999999999999999864
No 325
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=95.62 E-value=0.05 Score=42.67 Aligned_cols=69 Identities=12% Similarity=0.117 Sum_probs=46.6
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
..++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++
T Consensus 37 ~~~~~vL~~l~~~--------~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~-~~~DrR-~~~~~LT~~G~ 102 (142)
T 3ech_A 37 PPDVHVLKLIDEQ--------RGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRER-NPSDQR-SFQLFLTDEGL 102 (142)
T ss_dssp HHHHHHHHHHHHT--------TTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC------------CCEECHHHH
T ss_pred HHHHHHHHHHHhC--------CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeecc-CCCCCC-eeeeEECHHHH
Confidence 4666788888875 38999999999999 9999999999999999999742 112221 23366777776
Q ss_pred hhh
Q 017495 119 FLI 121 (370)
Q Consensus 119 ~l~ 121 (370)
.+.
T Consensus 103 ~~~ 105 (142)
T 3ech_A 103 AIH 105 (142)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 326
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=95.58 E-value=0.044 Score=44.13 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=51.0
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 54 ~q~~vL~~l~~~--------~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~-~~~DrR-~~~~~LT~~G~~ 119 (161)
T 3e6m_A 54 PKLRLLSSLSAY--------GELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSI-SDADQR-KRTVVLTRKGKK 119 (161)
T ss_dssp HHHHHHHHHHHH--------SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC----CCC-SCEEEECHHHHH
T ss_pred HHHHHHHHHHhC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeC-CcccCC-eeEeeECHHHHH
Confidence 345577788765 38999999999999 9999999999999999999742 222221 244778887775
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 120 ~~~ 122 (161)
T 3e6m_A 120 KLA 122 (161)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 327
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.56 E-value=0.013 Score=45.84 Aligned_cols=79 Identities=9% Similarity=0.058 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-CCCCCCCcchHHHHHHHHhcCCceec
Q 017495 19 IGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL-PTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..+++++.+.+...+ +..|..+ +.+..||++.+ |+ ++..+.+.|+.|...|+|+.
T Consensus 24 ~~~~~l~~l~~~w~l~I---------L~~L~~g---------~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r 81 (131)
T 1yyv_A 24 PSREVLKHVTSRWGVLI---------LVALRDG---------THRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNR 81 (131)
T ss_dssp THHHHHHHHHSHHHHHH---------HHHGGGC---------CEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEE
T ss_pred CHHHHHHHHcCCcHHHH---------HHHHHcC---------CCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEE
Confidence 34555555555555444 3444544 79999999999 79 99999999999999999997
Q ss_pred cccCCCCCccccceecchhhhhhh
Q 017495 98 SLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 98 ~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
.. ++.|++ ...|.+|+.++.+.
T Consensus 82 ~~-~~~d~r-~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 82 VS-YPVVPP-HVEYSLTPLGEQVS 103 (131)
T ss_dssp EE-ECSSSC-EEEEEECHHHHHHH
T ss_pred Ee-cCCCCC-eEEEEECccHHHHH
Confidence 42 222221 34699999887554
No 328
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=95.53 E-value=0.008 Score=53.51 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=46.1
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
+.|++.|... +.++|+.|||+.+|+ +..-+.|+|+.|+..|||.++. ++.|++++..-
T Consensus 33 l~IL~~l~~~-------~~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~~--------~~~Y~LG~~~~ 90 (275)
T 3mq0_A 33 VRILDLVAGS-------PRDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARSA--------DGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHHC-------SSCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEECT--------TSEEEECTHHH
T ss_pred HHHHHHHhhC-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECC--------CCcEEehHHHH
Confidence 4578888765 137999999999999 9999999999999999999631 36799987543
No 329
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.46 E-value=0.016 Score=45.01 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecch
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAP 115 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~ 115 (370)
+++|..+||+.+++ ++..++++|+.|...|+|...+ |+ .+.|.++.
T Consensus 25 ~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~-----g~-~ggy~L~~ 70 (129)
T 2y75_A 25 GPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIR-----GA-YGGYVLGS 70 (129)
T ss_dssp CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC----------CCEEESS
T ss_pred CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecC-----CC-CCceEeCC
Confidence 48999999999999 9999999999999999998631 21 25677664
No 330
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.43 E-value=0.0044 Score=46.76 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=44.8
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
.++.|+..|..+ +.++.|||+.+|+ ++..+.+.|+.|...|+|...+ +|+ ...|.+++.
T Consensus 26 ~r~~IL~~L~~~---------~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~----~gr-~~~y~l~~~ 84 (108)
T 2kko_A 26 RRLQILDLLAQG---------ERAVEAIATATGM----NLTTASANLQALKSGGLVEARR----EGT-RQYYRIAGE 84 (108)
T ss_dssp TTHHHHHHHTTC---------CEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEE----ETT-EEEEEESCH
T ss_pred HHHHHHHHHHcC---------CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE----eCC-EEEEEEChH
Confidence 345566667655 7999999999999 9999999999999999998642 221 234666643
No 331
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.42 E-value=0.017 Score=43.32 Aligned_cols=79 Identities=8% Similarity=0.116 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-CCCCCCCcchHHHHHHHHhcCCceec
Q 017495 19 IGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL-PTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..+++++.+.+...+|. .|..+ +.+..||++.+ |+ ++..+.+.|+.|...|+|+.
T Consensus 14 ~~~~~l~~l~~~~~~~IL~---------~L~~~---------~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r 71 (107)
T 2fsw_A 14 PVRKSMQIFAGKWTLLIIF---------QINRR---------IIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKK 71 (107)
T ss_dssp HHHHHHHHHTSSSHHHHHH---------HHTTS---------CEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHcCccHHHHHH---------HHHhC---------CcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEE
Confidence 4555666666666655443 44444 79999999999 49 99999999999999999997
Q ss_pred cccCCCCCccccceecchhhhhhh
Q 017495 98 SLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 98 ~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
.. ++.|+ ....|.+|+.++.+.
T Consensus 72 ~~-~~~d~-r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 72 KQ-YPEVP-PRVEYSLTPLGEKVL 93 (107)
T ss_dssp EE-ECSSS-CEEEEEECHHHHTTH
T ss_pred ee-cCCCC-CeeEEEECccHHHHH
Confidence 42 22222 134699999876544
No 332
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.36 E-value=0.049 Score=42.85 Aligned_cols=68 Identities=9% Similarity=0.087 Sum_probs=52.1
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 32 ~q~~iL~~l~~~--------~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~LT~~G~~ 97 (145)
T 3g3z_A 32 NLFAVLYTLATE--------GSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQE-GEQDRR-KRLLSLTETGKA 97 (145)
T ss_dssp HHHHHHHHHHHH--------CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECC-CSSCGG-GSCEEECHHHHH
T ss_pred HHHHHHHHHHHC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecc-CCCCCc-eeeeeEChhHHH
Confidence 556678888765 37999999999999 9999999999999999999642 222221 244778888775
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 98 ~~ 99 (145)
T 3g3z_A 98 YA 99 (145)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 333
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.34 E-value=0.012 Score=45.36 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=41.1
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
-.++.|+..|..+ +.++.+||+.+|+ ++..+.+.|+.|...|++...
T Consensus 46 ~~rl~IL~~L~~~---------~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~ 92 (122)
T 1r1t_A 46 PNRLRLLSLLARS---------ELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYR 92 (122)
T ss_dssp HHHHHHHHHHTTC---------CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 3466677888765 7999999999999 999999999999999999864
No 334
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=95.33 E-value=0.11 Score=40.44 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=53.0
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++.... .+.|++ ...|.+|+.+..
T Consensus 32 ~~~~iL~~l~~~--------~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~-~~~d~r-~~~~~lT~~G~~ 97 (142)
T 3bdd_A 32 TRYSILQTLLKD--------APLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKR-NPDNQR-EVLVWPTEQARE 97 (142)
T ss_dssp HHHHHHHHHHHH--------CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSSTT-CEEEEECHHHHH
T ss_pred HHHHHHHHHHhC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHH
Confidence 455678888765 38999999999999 9999999999999999999742 222322 345888988876
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 98 ~~ 99 (142)
T 3bdd_A 98 AL 99 (142)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 335
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=95.30 E-value=0.021 Score=52.47 Aligned_cols=94 Identities=11% Similarity=0.103 Sum_probs=60.4
Q ss_pred HHHHHHhhcCCC------CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhC---CCCCCCeEEeccCCC-C-
Q 017495 195 MNKILDVYRGFD------GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANA---PSFPGVEHVGGDMFE-N- 262 (370)
Q Consensus 195 ~~~l~~~~~~~~------~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a---~~~~rv~~~~~D~~~-~- 262 (370)
.+.+++.+. .. +...|||||+|.|.++..|+++....++++++. +..+... ...++++++.+|+++ +
T Consensus 41 ~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~~~ 119 (353)
T 1i4w_A 41 YNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWST 119 (353)
T ss_dssp HHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCHHH
T ss_pred HHHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccchhh
Confidence 445555554 33 347899999999999999998754446777764 3332221 135789999999976 2
Q ss_pred C----CC--------------C-CEEEecccccCCChhHHHHHHHH
Q 017495 263 V----PR--------------G-DAIFLKWMLHGWTDEHCLKLLKN 289 (370)
Q Consensus 263 ~----p~--------------~-D~i~~~~vLh~~~d~~~~~iL~~ 289 (370)
+ .+ . .+.+..+.=++.+.+-..++|..
T Consensus 120 ~~~l~~~~~l~~~~~~~~~~~~~~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 120 YSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp HHHHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHHH
T ss_pred HHHhhcccccccccccccccCCCceEEEEECCCchHHHHHHHHHHh
Confidence 1 11 1 35677777777765544455554
No 336
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=95.27 E-value=0.081 Score=42.90 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=51.3
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|.... +..|++ ...+.+|+.++.
T Consensus 46 ~~~~iL~~L~~~--------~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~~~LT~~G~~ 111 (168)
T 2nyx_A 46 PQFRTLVILSNH--------GPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLP-HPTSRR-ELLAALTKRGRD 111 (168)
T ss_dssp HHHHHHHHHHHH--------CSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCSS-CEEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHHHHH
Confidence 455677888765 38999999999999 9999999999999999999742 222221 234778887765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 112 ~~ 113 (168)
T 2nyx_A 112 VV 113 (168)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 337
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=95.13 E-value=0.12 Score=40.98 Aligned_cols=67 Identities=12% Similarity=0.213 Sum_probs=46.6
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccc-cCCCCCccccceecchhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSL-QNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~-~~~~~g~~~~~y~~~~~~~~ 119 (370)
+..++..| .. +++|..+||+.+++ ++..+.++++.|+..|+|...+ .++.|++ ...+.+|+.++.
T Consensus 40 q~~iL~~l-~~--------~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R-~~~~~lT~~G~~ 105 (151)
T 3kp7_A 40 QSHVLNML-SI--------EALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQR-LKIIKLSNKGKK 105 (151)
T ss_dssp HHHHHHHH-HH--------SCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC------------CCBEECHHHHH
T ss_pred HHHHHHHH-Hc--------CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCCC-eeEEEECHhHHH
Confidence 34478888 54 38999999999999 9999999999999999999620 0122221 234667777765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 106 ~~ 107 (151)
T 3kp7_A 106 YI 107 (151)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 338
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.05 E-value=0.012 Score=41.67 Aligned_cols=59 Identities=14% Similarity=0.073 Sum_probs=46.0
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
.....|++.|... +.|+.|||+++|+ +...+++.|..|...|+|.... | ++-.|.++..
T Consensus 17 ~~~~~IL~lL~~~---------g~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~-----~-~PP~W~~~~~ 75 (82)
T 1oyi_A 17 EIVCEAIKTIGIE---------GATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSD-----D-IPPRWFMTTE 75 (82)
T ss_dssp HHHHHHHHHHSSS---------TEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECS-----S-SSCEEESCC-
T ss_pred HHHHHHHHHHHHc---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC-----C-CCCcceeccC
Confidence 3455677888865 4999999999999 9999999999999999999631 2 1355666543
No 339
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=95.02 E-value=0.043 Score=43.71 Aligned_cols=72 Identities=18% Similarity=0.134 Sum_probs=52.0
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCC-CCCCCCcchHHHHHHHHhcCCceeccccC---CCCCccccceecch
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLP-TKNPDAPFLLDRMLSLLASYDILRCSLQN---GDNGQVERVYGAAP 115 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~---~~~g~~~~~y~~~~ 115 (370)
.++-|+..|-.. |.+..|+++|++.++ + ++..+++.|+.|+..|+|++.... ...|+.-..|++|+
T Consensus 30 tR~~IL~~Ll~~------p~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~ 99 (151)
T 3u1d_A 30 TRLDVLHQILAQ------PDGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTG 99 (151)
T ss_dssp HHHHHHHHHHHS------TTSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECH
T ss_pred HHHHHHHHHHcC------CCCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECH
Confidence 555666666543 223689999999999 8 999999999999999999964211 01133344799999
Q ss_pred hhhhhh
Q 017495 116 ICKFLI 121 (370)
Q Consensus 116 ~~~~l~ 121 (370)
.++.+.
T Consensus 100 ~Gr~~l 105 (151)
T 3u1d_A 100 EGIALL 105 (151)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 997433
No 340
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=95.02 E-value=0.018 Score=40.71 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=37.9
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.|++.|... +++|+.|||+.+|+ ++..+++.|+.|...|+|..
T Consensus 4 ~Il~~L~~~--------~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 4 EILEFLNRH--------NGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHS--------CCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 467777664 37999999999999 99999999999999999985
No 341
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=94.82 E-value=0.027 Score=44.71 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
.++|.++||+.+++ ++..++++|..|...|+|... .|+ .+.|.+...
T Consensus 27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~-----rG~-~GGy~Lar~ 73 (143)
T 3t8r_A 27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSV-----RGA-KGGYQLRVP 73 (143)
T ss_dssp CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC-----SSS-SSEEEESSC
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEec-----CCC-CCCeeecCC
Confidence 48999999999999 999999999999999999853 232 356877643
No 342
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=94.82 E-value=0.19 Score=40.30 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=52.1
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 47 ~q~~iL~~l~~~--------~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~ 112 (162)
T 3k0l_A 47 PQFTALSVLAAK--------PNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAP-DPTHGR-RILVTVTPSGLD 112 (162)
T ss_dssp HHHHHHHHHHHC--------TTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEE-CCSSSC-CEEEEECHHHHH
T ss_pred HHHHHHHHHHHC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecC-CCCcCC-eeEeEECHhHHH
Confidence 345577888775 38999999999999 9999999999999999999742 222221 234778888775
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 113 ~~~ 115 (162)
T 3k0l_A 113 KLN 115 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 343
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=94.81 E-value=0.031 Score=41.07 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=48.9
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHH----HHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKI----AARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~el----a~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
+.++..|... ++.+..+| |+.+++ ++..+.++|+.|+..|+++... ++ ....|.+|+.+
T Consensus 11 ~~iL~~l~~~--------~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~-~~----r~~~~~LT~~G 73 (99)
T 1tbx_A 11 AIVLAYLYDN--------EGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQ-ER----GEKRLYLTEKG 73 (99)
T ss_dssp HHHHHHHTTC--------TTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEE-ET----TEEEEEECHHH
T ss_pred HHHHHHHHHc--------CCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEe-cC----CceEEEECHHH
Confidence 4456666654 37999999 999999 9999999999999999998642 11 14568888888
Q ss_pred hhhhc
Q 017495 118 KFLIK 122 (370)
Q Consensus 118 ~~l~~ 122 (370)
+.+..
T Consensus 74 ~~~~~ 78 (99)
T 1tbx_A 74 KLFAI 78 (99)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 75543
No 344
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=94.80 E-value=0.009 Score=49.66 Aligned_cols=72 Identities=21% Similarity=0.325 Sum_probs=52.9
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCC-CCCCCCcchHHHHHHHHhcCCceeccccCCCCCcccccee
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLP-TKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYG 112 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~ 112 (370)
.+|.-=.++.|+..|..+ |.++.+|++.++ + +...+++.|+.|...|+|+..++....|..+..|+
T Consensus 18 ~~La~P~Rl~il~~L~~~---------~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~ 84 (182)
T 4g6q_A 18 DLLHHPLRWRITQLLIGR---------SLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYT 84 (182)
T ss_dssp HHTTSHHHHHHHHHTTTS---------CEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEE
T ss_pred HHhCCHHHHHHHHHHHhC---------CCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEE
Confidence 344444678888888876 899999999996 8 88999999999999999986421111233346688
Q ss_pred cchhhh
Q 017495 113 AAPICK 118 (370)
Q Consensus 113 ~~~~~~ 118 (370)
.++..-
T Consensus 85 ~~~~~~ 90 (182)
T 4g6q_A 85 LNTQAG 90 (182)
T ss_dssp ECTTTT
T ss_pred eccccc
Confidence 776543
No 345
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=94.77 E-value=0.024 Score=49.36 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=48.0
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
+.|++.|... ++++|+.|||+.+|+ +..-+.|+|+.|+..|++..+. . ++.|++++....+
T Consensus 9 l~iL~~l~~~-------~~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~---~----~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 9 ASIMRALGSH-------PHGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALG---P----AGGFRLGPALGQL 69 (241)
T ss_dssp HHHHHHHHTC-------TTCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECG---G----GCEEEECSHHHHH
T ss_pred HHHHHHHHhC-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC---C----CCeEEECHHHHHH
Confidence 3467777654 137999999999999 9999999999999999999641 1 3679998765433
No 346
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=94.76 E-value=0.034 Score=43.79 Aligned_cols=49 Identities=20% Similarity=0.095 Sum_probs=42.2
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.+..+||+.+++ ++..+.+.|+.|...|+|...+ ...|.+|+.+..+.
T Consensus 22 ~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~~--------~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 22 YARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYEK--------YRGLVLTSKGKKIG 70 (142)
T ss_dssp SCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEET--------TTEEEECHHHHHHH
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEee--------CceEEEchhHHHHH
Confidence 7999999999999 9999999999999999998631 35788998876544
No 347
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=94.74 E-value=0.032 Score=48.78 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=46.4
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
+.|++.|... +.++|+.|||+.+|+ +...+.|+|+.|+..|+++.+ . ++.|++++..
T Consensus 11 l~iL~~l~~~-------~~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~----~----~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKN-------PGDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK----K----DKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHC-------SSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC----T----TSCEEECTHH
T ss_pred HHHHHHHHhC-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC----C----CCcEEECHHH
Confidence 4567777654 137999999999999 999999999999999999963 1 4779998754
No 348
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=94.69 E-value=0.027 Score=47.58 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=51.9
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
.+|..-.++.|+..|..+ |.++.+||+.+++ ++..+.+.|+.|...|+|.........|.....|.+
T Consensus 10 kaL~~~~rl~IL~~L~~~---------~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~L 76 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTKR---------PYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMI 76 (202)
T ss_dssp HHHHSHHHHHHHHHHHHS---------CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEE
T ss_pred HHhCCHHHHHHHHHHHhC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEE
Confidence 445555667777777665 8999999999999 999999999999999999974311111122455777
Q ss_pred chhh
Q 017495 114 APIC 117 (370)
Q Consensus 114 ~~~~ 117 (370)
+...
T Consensus 77 t~~~ 80 (202)
T 2p4w_A 77 KKGL 80 (202)
T ss_dssp CTTE
T ss_pred ChHH
Confidence 6654
No 349
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=94.68 E-value=0.043 Score=42.71 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=50.9
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.... ++.|++ ...+.+|+.++.
T Consensus 34 ~~~~iL~~l~~~--------~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~-~~~d~r-~~~~~lT~~G~~ 99 (139)
T 3bja_A 34 VQFGVIQVLAKS--------GKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEK-NPNDQR-ETLVYLTKKGEE 99 (139)
T ss_dssp HHHHHHHHHHHS--------CSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeecc-CCCCCc-eeEEEECHHHHH
Confidence 455677777765 38999999999999 9999999999999999998642 222221 234677887765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 100 ~~ 101 (139)
T 3bja_A 100 TK 101 (139)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 350
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.58 E-value=0.054 Score=42.65 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=50.5
Q ss_pred HHhcChHHHHhh-cccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 39 AIELNVIDIISA-ASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 39 ~~~lglfd~L~~-~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
..++.++..|.. . +++|..+||+.+++ ++..+.+.++.|+..|+|+... .+.|++ ...+.+|+.+
T Consensus 35 ~~~~~iL~~l~~~~--------~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G 100 (147)
T 2hr3_A 35 FSQLVVLGAIDRLG--------GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHA-DPQDGR-RTRVSLSSEG 100 (147)
T ss_dssp HHHHHHHHHHHHTT--------SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC--------CCEEEECHHH
T ss_pred HHHHHHHHHHHHcC--------CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCC-CCCCCC-ceeeEECHHH
Confidence 455677888876 4 38999999999999 9999999999999999999642 112221 2347788877
Q ss_pred hhhh
Q 017495 118 KFLI 121 (370)
Q Consensus 118 ~~l~ 121 (370)
..+.
T Consensus 101 ~~~~ 104 (147)
T 2hr3_A 101 RRNL 104 (147)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 351
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=94.54 E-value=0.044 Score=43.62 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=43.5
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.+..||++.+++ ++..+.+.|+.|...|+|+... ...+ + ...|.+|+.++.+.
T Consensus 37 ~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~-~~~d-~-~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 37 LTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVP-AESG-S-HQEYRLTDKGRALF 90 (146)
T ss_dssp CCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEE-CSSS-S-CEEEEECHHHHTTH
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEe-cCCC-C-eEEEEECchHHHHH
Confidence 7999999999999 9999999999999999999742 2122 2 35788998876444
No 352
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=94.48 E-value=0.035 Score=43.88 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=49.3
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
..++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++
T Consensus 40 ~~~~~iL~~l~~~--------~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~lT~~G~ 105 (148)
T 3nrv_A 40 MTEWRIISVLSSA--------SDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNG-HSEDKR-TYAINLTEMGQ 105 (148)
T ss_dssp HHHHHHHHHHHHS--------SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-----------CCBEECHHHH
T ss_pred HHHHHHHHHHHcC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeec-CCCCcc-eeEeEECHhHH
Confidence 3456677778765 38999999999999 9999999999999999999642 122221 24467777776
Q ss_pred hhh
Q 017495 119 FLI 121 (370)
Q Consensus 119 ~l~ 121 (370)
.+.
T Consensus 106 ~~~ 108 (148)
T 3nrv_A 106 ELY 108 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 353
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=94.44 E-value=0.02 Score=40.12 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+|.|+.|||+.+|+ ++..+++-|..|+..|+|...
T Consensus 23 ~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 23 APVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 38999999999999 999999999999999999964
No 354
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=94.39 E-value=0.15 Score=49.77 Aligned_cols=110 Identities=12% Similarity=0.035 Sum_probs=68.5
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-------------CCCeEEEeeh-hhHHHhCCC------CCCCeE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-------------PCIKGISFDL-PHVLANAPS------FPGVEH 254 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-p~~~~~a~~------~~rv~~ 254 (370)
..-+++.+. .....+|+|-+||+|.++....+.. ....++++|+ +.+...++. .+.-.+
T Consensus 206 v~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I 284 (530)
T 3ufb_A 206 VRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRI 284 (530)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEE
T ss_pred HHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccc
Confidence 334444444 4456799999999999998765542 1346888887 666655542 134567
Q ss_pred EeccCCC-CCC------CCCEEEeccccc---------CCC-----hhHHHHHHHHHHHhCC-------CCcEEEEEee
Q 017495 255 VGGDMFE-NVP------RGDAIFLKWMLH---------GWT-----DEHCLKLLKNCWEALP-------ENGKVIIVES 305 (370)
Q Consensus 255 ~~~D~~~-~~p------~~D~i~~~~vLh---------~~~-----d~~~~~iL~~~~~~L~-------pgG~lli~e~ 305 (370)
..+|.+. +.. ..|+|+.+==+- .++ .+.-..++..+.+.|+ |||++.++-+
T Consensus 285 ~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 285 DPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp ECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred cccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 7788775 321 129998843221 110 1112457888888887 6999998654
No 355
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=94.39 E-value=0.03 Score=44.00 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=50.7
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
..++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++
T Consensus 37 ~~~~~iL~~l~~~--------~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~-~~~D~R-~~~~~LT~~G~ 102 (143)
T 3oop_A 37 PEQWSVLEGIEAN--------EPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREI-STEDRR-ISLLSLTDKGR 102 (143)
T ss_dssp HHHHHHHHHHHHH--------SSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-----CC-SCEEEECHHHH
T ss_pred HHHHHHHHHHHHc--------CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccC-CCccCc-eeeeeECHHHH
Confidence 3455677777765 38999999999999 9999999999999999999642 222221 23477888776
Q ss_pred hhh
Q 017495 119 FLI 121 (370)
Q Consensus 119 ~l~ 121 (370)
.+.
T Consensus 103 ~~~ 105 (143)
T 3oop_A 103 KET 105 (143)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 356
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=94.38 E-value=0.061 Score=42.22 Aligned_cols=67 Identities=7% Similarity=0.025 Sum_probs=49.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|. . ++.|..+||+.+++ ++..+.+.++.|+..|+|+... .+.|++ ...+.+|+.+..
T Consensus 38 ~~~~iL~~l~-~--------~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~-~~~d~r-~~~~~lT~~G~~ 102 (146)
T 2gxg_A 38 LDFLVLRATS-D--------GPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVR-DREDRR-KILIEITEKGLE 102 (146)
T ss_dssp HHHHHHHHHT-T--------SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECHHHHH
T ss_pred HHHHHHHHHh-c--------CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeec-CCCCCc-eEEEEECHHHHH
Confidence 4555677777 4 38999999999999 9999999999999999999642 222221 234677877765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 103 ~~ 104 (146)
T 2gxg_A 103 TF 104 (146)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 357
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=94.34 E-value=0.012 Score=52.00 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=46.3
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
.|++.|... ++++|+.|||+++|+ +..-+.|+|+.|+..|++.++. . ++.|++++..-
T Consensus 10 ~IL~~l~~~-------~~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~~---~----~~~Y~lG~~~~ 67 (260)
T 3r4k_A 10 TLLTYFNHG-------RLEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQVE---G----ARSYRLGPQVL 67 (260)
T ss_dssp HHHTTCBTT-------BSEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEECS---S----SSEEEECTTHH
T ss_pred HHHHHHhhC-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---C----CCcEEcCHHHH
Confidence 456666543 148999999999999 9999999999999999999741 1 37899987543
No 358
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=94.32 E-value=0.074 Score=42.24 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=50.2
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+... .+.|++ ...+.+|+.++.
T Consensus 48 ~~~~iL~~l~~~--------~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~ 113 (153)
T 2pex_A 48 PQYLVMLVLWET--------DERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTR-AASDER-QVIIALTETGRA 113 (153)
T ss_dssp HHHHHHHHHHHS--------CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC---------CEEEECHHHHH
T ss_pred HHHHHHHHHHhC--------CCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecC-CcccCC-eeEeeECHHHHH
Confidence 355577777765 38999999999999 9999999999999999999642 112211 234778888875
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 114 ~~~ 116 (153)
T 2pex_A 114 LRS 116 (153)
T ss_dssp GGG
T ss_pred HHH
Confidence 554
No 359
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=94.31 E-value=0.054 Score=39.62 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=42.7
Q ss_pred CCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhhc
Q 017495 62 LSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 62 ~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
++..+||..+++ +++.+++.++.|...|+++.. ++.|.+|+.+..+..
T Consensus 21 ~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~---------~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 21 SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE---------GKQYMLTKKGEELLE 68 (95)
T ss_dssp BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECHHHHHHHH
T ss_pred CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE---------CCeeEEChhHHHHHH
Confidence 899999999999 999999999999999999963 356999999985553
No 360
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=94.30 E-value=0.097 Score=46.95 Aligned_cols=120 Identities=22% Similarity=0.198 Sum_probs=68.7
Q ss_pred CCCeEEEEcCcccHHHHH----HHhhCCCCeE--EEeehhhHHHhC------------------CC--CCC--CeEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGM----ITSRYPCIKG--ISFDLPHVLANA------------------PS--FPG--VEHVGGD 258 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~----l~~~~p~~~~--~~~D~p~~~~~a------------------~~--~~r--v~~~~~D 258 (370)
+.-+|||+|=|+|..... +.+..|..+. +.++. ..+... .. ..+ +++..||
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek-~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEK-ELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEES-SCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecH-HHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 446899999999976543 2344677654 44442 001000 00 022 3567777
Q ss_pred CCCC---CCC--CCEEEecccccCC-ChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcC
Q 017495 259 MFEN---VPR--GDAIFLKWMLHGW-TDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTT 332 (370)
Q Consensus 259 ~~~~---~p~--~D~i~~~~vLh~~-~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 332 (370)
+.+. .+. .|++++--.--.- |+---..+++.++++++|||.|.- .+
T Consensus 175 a~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT--Yt-------------------------- 226 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS--YS-------------------------- 226 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE--SC--------------------------
T ss_pred HHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE--Ee--------------------------
Confidence 7652 232 2888774321111 111124789999999999998763 11
Q ss_pred CCcccCHHHHHHHHHhCCCCcceEEecC
Q 017495 333 GGRERSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 333 ~~~~~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
.....++-|++|||++.++-..+
T Consensus 227 -----aag~VRR~L~~aGF~V~k~~G~g 249 (308)
T 3vyw_A 227 -----SSLSVRKSLLTLGFKVGSSREIG 249 (308)
T ss_dssp -----CCHHHHHHHHHTTCEEEEEECC-
T ss_pred -----CcHHHHHHHHHCCCEEEecCCCC
Confidence 01347788999999987665444
No 361
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=94.29 E-value=0.023 Score=49.98 Aligned_cols=59 Identities=14% Similarity=0.062 Sum_probs=47.3
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
.|++.|... ++++++.|||+.+|+ +..-+.|+|+.|+..|++..+ ++.|++++....+.
T Consensus 18 ~iL~~l~~~-------~~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~---------~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 18 AVLLAFDAQ-------RPNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS---------GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHTCSSS-------CSSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECGGGHHHH
T ss_pred HHHHHHHhC-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC---------CCEEEEcHHHHHHH
Confidence 456666542 137999999999999 999999999999999999963 37899988765444
No 362
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=94.23 E-value=0.082 Score=42.42 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=50.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++++..+||+.+++ ++..+.++++.|+..|+|+... +..|++ ...+.+|+.++.
T Consensus 53 ~~~~iL~~l~~~--------~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~~~lT~~G~~ 118 (162)
T 3cjn_A 53 AKMRALAILSAK--------DGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREV-DSDDQR-SSRVYLTPAGRA 118 (162)
T ss_dssp HHHHHHHHHHHS--------CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-C--CCS-SEEEEECHHHHH
T ss_pred HHHHHHHHHHHC--------CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHH
Confidence 456677888765 38999999999999 9999999999999999999642 112221 244777877764
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 119 ~~ 120 (162)
T 3cjn_A 119 VY 120 (162)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 363
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=94.19 E-value=0.037 Score=44.77 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecch
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAP 115 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~ 115 (370)
+++|.++||+.+++ ++..++++|..|...|+|... .|+ .+.|.+..
T Consensus 43 ~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~-----rG~-~GGy~Lar 88 (159)
T 3lwf_A 43 GPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSI-----RGA-HGGYVLNG 88 (159)
T ss_dssp CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----CST-TCEEEECS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEe-----cCC-CCceEecC
Confidence 48999999999999 999999999999999999963 132 35677654
No 364
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=94.14 E-value=0.11 Score=40.30 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=51.1
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... | +++.|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 32 ~~~~vL~~l~~~-----~-~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~-~~~D~R-~~~~~LT~~G~~ 99 (139)
T 3eco_A 32 EQGHTLGYLYAH-----Q-QDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYV-DAQDTR-RKNIGLTTSGIK 99 (139)
T ss_dssp HHHHHHHHHHHS-----T-TTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CCC--C-CEEEEECHHHHH
T ss_pred HHHHHHHHHHhc-----C-CCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecC-CCCCCC-eeeeEECHHHHH
Confidence 445567777664 1 237999999999999 9999999999999999999742 223321 234677887765
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 100 ~~~ 102 (139)
T 3eco_A 100 LVE 102 (139)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 365
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=94.14 E-value=0.056 Score=42.03 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=50.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|...|+|+... ++.|++ ...+.+|+.++.
T Consensus 35 ~~~~iL~~l~~~--------~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~-~~~d~R-~~~~~lT~~G~~ 100 (138)
T 1jgs_A 35 AQFKVLCSIRCA--------ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP-NPNDKR-GVLVKLTTGGAA 100 (138)
T ss_dssp HHHHHHHHHHHH--------SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CTTCSS-CEEEEECHHHHH
T ss_pred HHHHHHHHHHhc--------CCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecC-CcccCc-eeEeEEChhHHH
Confidence 345567777765 37999999999999 9999999999999999999742 222221 234778887765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 101 ~~ 102 (138)
T 1jgs_A 101 IC 102 (138)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 366
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=94.12 E-value=0.058 Score=42.99 Aligned_cols=68 Identities=7% Similarity=0.073 Sum_probs=49.1
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 44 ~~~~iL~~l~~~--------~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~-~~~d~R-~~~~~lT~~G~~ 109 (155)
T 3cdh_A 44 PEWRVLACLVDN--------DAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVA-DAKDKR-RVRVRLTDDGRA 109 (155)
T ss_dssp HHHHHHHHHSSC--------SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC--------CCCEEECHHHHH
T ss_pred HHHHHHHHHHHC--------CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc-CCCcCC-eeEeEECHHHHH
Confidence 345567777664 38999999999999 9999999999999999999642 112221 234778887765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 110 ~~ 111 (155)
T 3cdh_A 110 LA 111 (155)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 367
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=94.11 E-value=0.041 Score=42.86 Aligned_cols=68 Identities=7% Similarity=0.115 Sum_probs=50.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|+... .+.|+ ....+.+|+.+..
T Consensus 39 ~~~~iL~~l~~~--------~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~-~~~d~-R~~~~~lT~~G~~ 104 (140)
T 2nnn_A 39 TQWAALVRLGET--------GPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSA-DPDDG-RRLLVSLSPAGRA 104 (140)
T ss_dssp HHHHHHHHHHHH--------SSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEE-ETTEE-EEEEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeC-CCCCC-CeeeeEECHhHHH
Confidence 456678888765 38999999999999 9999999999999999999642 11111 1234777877765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 105 ~~ 106 (140)
T 2nnn_A 105 EL 106 (140)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 368
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=94.05 E-value=0.12 Score=40.71 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=42.1
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.+..++..|... +++++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 42 ~q~~vL~~l~~~------~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~-~~~DrR-~~~~~LT~~G~~ 109 (148)
T 3jw4_A 42 QQGRMIGYIYEN------QESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRI-PENNAR-QKNIYVLPKGAA 109 (148)
T ss_dssp HHHHHHHHHHHH------TTTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC----------CCCCBCHHHHH
T ss_pred HHHHHHHHHHhC------CCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeC-CCCCch-hheeeECHHHHH
Confidence 344566777653 1138999999999999 9999999999999999999642 222221 234667777765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 110 ~~ 111 (148)
T 3jw4_A 110 LV 111 (148)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 369
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=94.01 E-value=0.33 Score=38.07 Aligned_cols=67 Identities=4% Similarity=0.014 Sum_probs=49.6
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
++.++..|... +++|..+||+.+++ ++..+.+.++.|+..|+|.... ++.|++ ...+.+|+.++.+
T Consensus 44 ~~~iL~~l~~~--------~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~d~R-~~~~~lT~~G~~~ 109 (150)
T 2rdp_A 44 QFVALQWLLEE--------GDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVR-DEHDRR-VVRIRLLEKGERI 109 (150)
T ss_dssp HHHHHHHHHHH--------CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CCC----CEEEEECHHHHHH
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecC-CCCCcc-eeEeEECHhHHHH
Confidence 45577777765 38999999999999 9999999999999999999642 222221 2347778777654
Q ss_pred h
Q 017495 121 I 121 (370)
Q Consensus 121 ~ 121 (370)
.
T Consensus 110 ~ 110 (150)
T 2rdp_A 110 I 110 (150)
T ss_dssp H
T ss_pred H
Confidence 4
No 370
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.00 E-value=0.077 Score=42.25 Aligned_cols=69 Identities=12% Similarity=0.016 Sum_probs=51.9
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
..++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+... +..|++ ...+.+|+.++
T Consensus 44 ~~~~~iL~~l~~~--------~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~~~lT~~G~ 109 (154)
T 2eth_A 44 TTELYAFLYVALF--------GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREM-DPVDRR-TYRVVLTEKGK 109 (154)
T ss_dssp HHHHHHHHHHHHH--------CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEE-CTTTSS-CEEEEECHHHH
T ss_pred HHHHHHHHHHHHc--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeC-CCCCcc-eeEEEECHHHH
Confidence 3466678888765 37999999999999 9999999999999999999742 222221 23467787776
Q ss_pred hhh
Q 017495 119 FLI 121 (370)
Q Consensus 119 ~l~ 121 (370)
.+.
T Consensus 110 ~~~ 112 (154)
T 2eth_A 110 EIF 112 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 371
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=93.97 E-value=0.12 Score=41.31 Aligned_cols=67 Identities=7% Similarity=-0.061 Sum_probs=48.8
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.+.
T Consensus 53 ~~vL~~l~~~--------~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYRE--------DGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQR-DEKDRR-SYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHS--------CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CC---C-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec-CCCCCC-eeEEEECHHHHHHH
Confidence 4456667654 38999999999999 9999999999999999999742 222321 23467788776554
Q ss_pred c
Q 017495 122 K 122 (370)
Q Consensus 122 ~ 122 (370)
.
T Consensus 119 ~ 119 (159)
T 3s2w_A 119 P 119 (159)
T ss_dssp H
T ss_pred H
Confidence 3
No 372
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=93.97 E-value=0.07 Score=39.00 Aligned_cols=55 Identities=22% Similarity=0.184 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 59 GELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 59 ~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+++.+..+||+.+++ +...|+|.|..|...|+|.... . +||+ +.-.+|+.++.+.
T Consensus 34 g~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~-~-~D~R--~~v~LT~~G~~~l 88 (96)
T 2obp_A 34 ATPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSV-E-ADGR--GHASLTQEGAALA 88 (96)
T ss_dssp CCCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-C-TTSC--EEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeec-C-CCCc--eeEEECHHHHHHH
Confidence 347899999999999 9999999999999999999743 2 4552 3457788776444
No 373
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=93.94 E-value=0.048 Score=47.45 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=51.0
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.|.|+.|...|+++... . ...|.+|+.+..
T Consensus 153 ~~~~IL~~L~~~--------~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~~---r----~~~~~LT~~G~~ 213 (244)
T 2wte_A 153 EEMKLLNVLYET--------KGTGITELAKMLDK----SEKTLINKIAELKKFGILTQKG---K----DRKVELNELGLN 213 (244)
T ss_dssp HHHHHHHHHHHH--------TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET---T----TTEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC---C----ccEEEECHHHHH
Confidence 345566776554 37999999999999 9999999999999999999631 1 367999998875
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 214 l~~ 216 (244)
T 2wte_A 214 VIK 216 (244)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 374
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=93.93 E-value=0.041 Score=44.66 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
.++|.++||+.+++ ++..++++|..|...|+|+.. .|+ .+.|.+...
T Consensus 27 ~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~-----rG~-~GGy~Lar~ 73 (162)
T 3k69_A 27 SKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGT-----VGK-NGGYQLDLA 73 (162)
T ss_dssp SCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEE-----CST-TCEEECCSC
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee-----cCC-CCCeEecCC
Confidence 48999999999999 999999999999999999853 232 356887654
No 375
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=93.93 E-value=0.05 Score=42.81 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=47.8
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
..++.++..|..+ ++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.+.
T Consensus 38 ~~~~~iL~~l~~~---------~~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~-~~~d~R-~~~~~lT~~g~ 102 (146)
T 3tgn_A 38 NTQEHILMLLSEE---------SLTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSK-DSKDAR-VIFYQLTDLAR 102 (146)
T ss_dssp HHHHHHHHHHTTC---------CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC------------CCEECGGGH
T ss_pred HHHHHHHHHHHhC---------CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEecc-CCCCCc-eeEEEECHhHH
Confidence 3556677888776 4999999999999 9999999999999999999642 112221 24466777665
Q ss_pred hhh
Q 017495 119 FLI 121 (370)
Q Consensus 119 ~l~ 121 (370)
.+.
T Consensus 103 ~~~ 105 (146)
T 3tgn_A 103 PIA 105 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 376
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=93.93 E-value=0.027 Score=49.64 Aligned_cols=47 Identities=11% Similarity=0.144 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
+++++.|||+.+|+ +..-+.|+|+.|+..|++..+. ++.|++++..-
T Consensus 37 ~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~~--------~~~Y~lg~~~~ 83 (260)
T 2o0y_A 37 PTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSRA--------DGSYSLGPEML 83 (260)
T ss_dssp SSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEECT--------TSCEEECHHHH
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECC--------CCeEEecHHHH
Confidence 38999999999999 9999999999999999999631 23899987543
No 377
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=93.89 E-value=0.1 Score=39.75 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=54.1
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC------CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCcc
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL------PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQV 107 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~ 107 (370)
+.++-.+++-|+..|..+ |.+--+|++.+ ++ ++..+...|+-|...|+|+....+...|+.
T Consensus 6 ~l~~g~l~~~IL~lL~~~---------p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~ 72 (117)
T 4esf_A 6 EMLKGSLEGCVLEIISRR---------ETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPP 72 (117)
T ss_dssp HHHHHHHHHHHHHHHHHS---------CBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----C
T ss_pred HHHHChHHHHHHHHHHcC---------CCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCC
Confidence 344555666677778776 89999999887 67 999999999999999999975221122333
Q ss_pred ccceecchhhhhhh
Q 017495 108 ERVYGAAPICKFLI 121 (370)
Q Consensus 108 ~~~y~~~~~~~~l~ 121 (370)
...|++|+.++...
T Consensus 73 rk~Y~LT~~G~~~l 86 (117)
T 4esf_A 73 RKFYSLNEAGRQEL 86 (117)
T ss_dssp EEEEEECHHHHHHH
T ss_pred ceEEEECHHHHHHH
Confidence 56799999987444
No 378
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=93.87 E-value=0.027 Score=41.53 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=45.4
Q ss_pred HHHHhcChHHHH-hhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecch
Q 017495 37 KSAIELNVIDII-SAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAP 115 (370)
Q Consensus 37 ~~~~~lglfd~L-~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~ 115 (370)
.--.++.++..| ..+ +.++.|||+.+|+ ++..+++.|+.|... ++...+ +|+ ...|++++
T Consensus 25 ~~~~Rl~IL~~l~~~~---------~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~~----~gr-~~~y~l~~ 85 (99)
T 2zkz_A 25 AHPMRLKIVNELYKHK---------ALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRNR----QGL-EIYYSINN 85 (99)
T ss_dssp CSHHHHHHHHHHHHHS---------CEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEEE----ETT-EEEEECCC
T ss_pred CCHHHHHHHHHHHHCC---------CcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhheE----eCc-EEEEEECh
Confidence 334555666443 344 7999999999999 999999999999999 998642 232 34577775
Q ss_pred hh
Q 017495 116 IC 117 (370)
Q Consensus 116 ~~ 117 (370)
..
T Consensus 86 ~~ 87 (99)
T 2zkz_A 86 PK 87 (99)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 379
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.85 E-value=0.28 Score=38.72 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=49.6
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.... .+.|++ ...+.+|+.+..+
T Consensus 39 ~~~iL~~l~~~--------~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~~ 104 (155)
T 1s3j_A 39 QLFVLASLKKH--------GSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTH-NTKDRR-VIDLSLTDEGDIK 104 (155)
T ss_dssp HHHHHHHHHHH--------SEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-SEEEEECHHHHHH
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecC-CCCCCc-eEEEEECHHHHHH
Confidence 34467777765 37999999999999 9999999999999999999742 222221 2346777777644
Q ss_pred h
Q 017495 121 I 121 (370)
Q Consensus 121 ~ 121 (370)
.
T Consensus 105 ~ 105 (155)
T 1s3j_A 105 F 105 (155)
T ss_dssp H
T ss_pred H
Confidence 4
No 380
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=93.75 E-value=0.034 Score=39.39 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=40.7
Q ss_pred HhcChHHHHhhcccccCCCC-CCCCHHHHHHHC-----CCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 40 IELNVIDIISAASAAEDGHG-ELLSASKIAARL-----PTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~-~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.+..|++.|... + ++.|++||++.+ ++ +..-+.|.|+.|+..|+|...
T Consensus 18 ~r~~IL~~l~~~-------~~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 18 PRLKILEVLQEP-------DNHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHHTSG-------GGSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhC-------CCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEE
Confidence 455688888753 1 389999999999 88 999999999999999999964
No 381
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=93.71 E-value=0.075 Score=41.54 Aligned_cols=68 Identities=10% Similarity=0.122 Sum_probs=51.0
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.+.++.|...|+|.... ++.|++ ...+.+|+.+..
T Consensus 38 ~~~~iL~~l~~~--------~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~-~~~d~R-~~~~~lT~~G~~ 103 (142)
T 2bv6_A 38 PQFLVLTILWDE--------SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRER-SEVDQR-EVFIHLTDKSET 103 (142)
T ss_dssp HHHHHHHHHHHS--------SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEE-CSSSTT-CEEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeec-CCCCcc-eEEEEEChHHHH
Confidence 456677777765 37999999999999 9999999999999999999742 212221 235677887764
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 104 ~~ 105 (142)
T 2bv6_A 104 IR 105 (142)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 382
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=93.70 E-value=0.031 Score=43.87 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=48.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 37 ~q~~vL~~l~~~--------~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~-~~~D~R-~~~~~LT~~G~~ 102 (140)
T 3hsr_A 37 TGYIVLMAIEND--------EKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTR-EEKDER-NLQISLTEQGKA 102 (140)
T ss_dssp HHHHHHHHSCTT--------CEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC---------CEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecC-CCCCcc-eeeeeEChHHHH
Confidence 344456666554 48999999999999 9999999999999999999742 222221 235778887775
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 103 ~~~ 105 (140)
T 3hsr_A 103 IKS 105 (140)
T ss_dssp THH
T ss_pred HHH
Confidence 543
No 383
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=93.67 E-value=0.023 Score=50.20 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=45.0
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
.|++.|... ..++++.|||+.+|+ +..-+.|+|+.|+..|++..+ ++.|++++..
T Consensus 25 ~iL~~l~~~-------~~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~~---------~~~Y~Lg~~~ 79 (265)
T 2ia2_A 25 AVIRCFDHR-------NQRRTLSDVARATDL----TRATARRFLLTLVELGYVATD---------GSAFWLTPRV 79 (265)
T ss_dssp HHHHTCCSS-------CSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEES---------SSEEEECGGG
T ss_pred HHHHHHHhC-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec---------CCEEEEcHHH
Confidence 456666542 137999999999999 999999999999999999962 3789998754
No 384
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=93.67 E-value=0.062 Score=43.13 Aligned_cols=68 Identities=21% Similarity=0.273 Sum_probs=48.4
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++++..+||+.+++ ++..+.++++.|+..|+|+... .+.|++ ...+.+|+.++.
T Consensus 50 ~~~~iL~~l~~~--------~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~ 115 (162)
T 2fa5_A 50 PEWRVITILALY--------PGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRET-HGDDRR-RSMLALSPAGRQ 115 (162)
T ss_dssp HHHHHHHHHHHS--------TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-----------CCCEECHHHHH
T ss_pred HHHHHHHHHHhC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeec-CCCCCC-eeEEEECHHHHH
Confidence 345577788765 38999999999999 9999999999999999999632 112221 244677777764
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 116 ~~ 117 (162)
T 2fa5_A 116 VY 117 (162)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 385
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=93.64 E-value=0.36 Score=37.92 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=50.4
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|.... .+.|++ ...+.+|+.++.
T Consensus 41 ~~~~iL~~l~~~--------~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~-~~~d~R-~~~~~lT~~G~~ 106 (152)
T 3bj6_A 41 GQRAILEGLSLT--------PGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRT-NPEHAR-SHRYWLTPRGEA 106 (152)
T ss_dssp HHHHHHHHHHHS--------TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-CSSSTT-SCEEEECHHHHH
T ss_pred HHHHHHHHHHhC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecC-Cccccc-ceeeEEChhhHH
Confidence 345577777765 38999999999999 9999999999999999999742 112221 234677877764
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 107 ~~ 108 (152)
T 3bj6_A 107 II 108 (152)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 386
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=93.59 E-value=0.065 Score=38.98 Aligned_cols=53 Identities=8% Similarity=-0.083 Sum_probs=41.7
Q ss_pred CCCHHHHHHHCCCCCCCCcch-HHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFL-LDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~-l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.|..+||+.+++ ++.. +.++++.|+..|+|..++ .|++ ...+.+|+.++.+.
T Consensus 30 ~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~---~drR-~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 30 EPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEET---LSYR-VKTLKLTEKGRRLA 83 (95)
T ss_dssp CCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEE---EETT-EEEEEECHHHHHHH
T ss_pred CCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCC---CCCC-eEEEEECHhHHHHH
Confidence 6999999999999 9999 999999999999998432 2211 24467888776544
No 387
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=93.57 E-value=0.33 Score=37.59 Aligned_cols=69 Identities=10% Similarity=0.180 Sum_probs=49.4
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
++.++..|... + ++++|..+||+.+++ ++..+.+.++.|+..|+|...+ ++.|++ ...+.+|+.+..+
T Consensus 36 ~~~iL~~l~~~-----~-~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~i~lT~~G~~~ 103 (141)
T 3bro_A 36 QMTIIDYLSRN-----K-NKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKV-SGKDSR-QKCLKLTKKANKL 103 (141)
T ss_dssp HHHHHHHHHHT-----T-TSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-SEEEEECHHHHTT
T ss_pred HHHHHHHHHHC-----C-CCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeC-CCcCCC-eeeeEECHHHHHH
Confidence 44567777765 1 127999999999999 9999999999999999998642 222221 2346677776544
Q ss_pred h
Q 017495 121 I 121 (370)
Q Consensus 121 ~ 121 (370)
.
T Consensus 104 ~ 104 (141)
T 3bro_A 104 E 104 (141)
T ss_dssp H
T ss_pred H
Confidence 4
No 388
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.53 E-value=0.069 Score=41.88 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=48.1
Q ss_pred hcChHHHH-hhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 41 ELNVIDII-SAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 41 ~lglfd~L-~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
++.++..| ... ++.|..+||+.+++ ++..+.+.++.|+..|+|.... ++.|++ ...+.+|+.+..
T Consensus 39 ~~~iL~~l~~~~--------~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~-~~~d~R-~~~~~lT~~G~~ 104 (146)
T 2fbh_A 39 RWLVLLHLARHR--------DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLA-VAEDRR-AKHIVLTPKADV 104 (146)
T ss_dssp HHHHHHHHHHCS--------SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-CBTTBC-SCEEEECTTHHH
T ss_pred HHHHHHHHHHcC--------CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecC-CCcccC-eeeeEECHhHHH
Confidence 44567777 443 48999999999999 9999999999999999999742 112211 233666766654
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 105 ~~ 106 (146)
T 2fbh_A 105 LI 106 (146)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 389
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=93.43 E-value=0.046 Score=43.68 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=37.5
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
++|..+||+.+++ ++..++++|..|...|+|+.. .| .+.|.+...
T Consensus 30 ~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~-----rG--~GGy~L~~~ 74 (149)
T 1ylf_A 30 LCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVN-----RG--PGGAGLLKD 74 (149)
T ss_dssp GCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CCEEESSC
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEc-----cC--CCceEeCCC
Confidence 8999999999999 999999999999999999863 23 366777654
No 390
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=93.38 E-value=0.17 Score=38.55 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=53.9
Q ss_pred HHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCC--------CCCCCCc-chHHHHHHHHhcCCceeccccCCCCC
Q 017495 35 VLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLP--------TKNPDAP-FLLDRMLSLLASYDILRCSLQNGDNG 105 (370)
Q Consensus 35 ~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~--------~~~~~~~-~~l~~~L~~L~~~g~l~~~~~~~~~g 105 (370)
++..-.++-|+..|..+ |.+..+|++.+. + ++ ..+.+.|+.|...|+|+....+ .+|
T Consensus 9 ~~~~~~~~~IL~~L~~~---------~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~-~~~ 74 (118)
T 2esh_A 9 FRGWWLASTILLLVAEK---------PSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDT-TVS 74 (118)
T ss_dssp HHHHHHHHHHHHHHHHS---------CBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEEC-SSS
T ss_pred cccchHHHHHHHHHHcC---------CCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeec-CCC
Confidence 34445666777788776 899999999873 6 88 9999999999999999874311 123
Q ss_pred ccccceecchhhhhhh
Q 017495 106 QVERVYGAAPICKFLI 121 (370)
Q Consensus 106 ~~~~~y~~~~~~~~l~ 121 (370)
+....|.+|+.++.+.
T Consensus 75 ~~r~~Y~LT~~G~~~l 90 (118)
T 2esh_A 75 PPRKIYRITPQGKLYL 90 (118)
T ss_dssp SCEEEEEECHHHHHHH
T ss_pred CCceEEEEChHHHHHH
Confidence 3345699999887443
No 391
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=93.37 E-value=0.073 Score=42.27 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=50.6
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec--cccCCCCCccccceecchhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC--SLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~--~~~~~~~g~~~~~y~~~~~~ 117 (370)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+. .. ++.|++ ...+.+|+.+
T Consensus 42 ~~~~iL~~l~~~--------~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~-~~~d~R-~~~~~LT~~G 107 (154)
T 2qww_A 42 QQLAMINVIYST--------PGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKT-IPNDSM-DLTLKLSKKG 107 (154)
T ss_dssp HHHHHHHHHHHS--------TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC---CTTCT-TCEEEECHHH
T ss_pred HHHHHHHHHHHC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcC-CCCCCc-eeEeEECHHH
Confidence 345677777765 37999999999999 99999999999999999996 32 222221 2357788887
Q ss_pred hhhh
Q 017495 118 KFLI 121 (370)
Q Consensus 118 ~~l~ 121 (370)
+.+.
T Consensus 108 ~~~~ 111 (154)
T 2qww_A 108 EDLS 111 (154)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 392
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=93.31 E-value=0.053 Score=42.14 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=49.4
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|+... ++.|++ ...+.+|+.+..
T Consensus 30 ~~~~iL~~l~~~--------~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~-~~~d~R-~~~~~lT~~G~~ 95 (138)
T 3bpv_A 30 AQVACLLRIHRE--------PGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQ-DPENRR-RYILEVTRRGEE 95 (138)
T ss_dssp HHHHHHHHHHHS--------TTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeec-CCCCce-eEEeeECHhHHH
Confidence 345567777765 38999999999999 9999999999999999999742 111111 123667777664
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 96 ~~ 97 (138)
T 3bpv_A 96 II 97 (138)
T ss_dssp TH
T ss_pred HH
Confidence 44
No 393
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=93.30 E-value=0.077 Score=41.55 Aligned_cols=67 Identities=12% Similarity=0.014 Sum_probs=49.8
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
++.++..|... +++|..+||+.+++ ++..+.+.++.|...|+|.... ++.|++ ...+.+|+.+..+
T Consensus 31 ~~~iL~~l~~~--------~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~-~~~d~R-~~~~~lT~~G~~~ 96 (144)
T 1lj9_A 31 QYLYLVRVCEN--------PGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQE-DASNKK-IKRIYATEKGKNV 96 (144)
T ss_dssp HHHHHHHHHHS--------TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECHHHHHH
T ss_pred HHHHHHHHHHC--------cCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeec-CCCCCc-eeeeEEChhHHHH
Confidence 44467777665 37999999999999 9999999999999999999742 222221 2347778877654
Q ss_pred h
Q 017495 121 I 121 (370)
Q Consensus 121 ~ 121 (370)
.
T Consensus 97 ~ 97 (144)
T 1lj9_A 97 Y 97 (144)
T ss_dssp H
T ss_pred H
Confidence 4
No 394
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=93.26 E-value=0.07 Score=41.97 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=51.9
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.+..+||+.+++ ++..+.++++.|+..|+|+... .+.|++ ...+.+|+.+..
T Consensus 41 ~~~~iL~~l~~~--------~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~-~~~d~R-~~~~~LT~~G~~ 106 (147)
T 1z91_A 41 PQYLALLLLWEH--------ETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKR-SEEDER-SVLISLTEDGAL 106 (147)
T ss_dssp HHHHHHHHHHHH--------SEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCB-CSSCTT-SBEEEECHHHHS
T ss_pred HHHHHHHHHHHC--------CCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHhHHH
Confidence 456677777765 37999999999999 9999999999999999999742 222222 234778888875
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 107 ~~~ 109 (147)
T 1z91_A 107 LKE 109 (147)
T ss_dssp GGG
T ss_pred HHH
Confidence 554
No 395
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.24 E-value=0.054 Score=42.30 Aligned_cols=68 Identities=12% Similarity=0.040 Sum_probs=50.5
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 37 ~~~~iL~~l~~~--------~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~ 102 (142)
T 2fbi_A 37 QQWRVIRILRQQ--------GEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWK-APKDQR-RVYVNLTEKGQQ 102 (142)
T ss_dssp HHHHHHHHHHHH--------CSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeec-CCCCCC-eeEEEECHHHHH
Confidence 456677788765 37999999999999 9999999999999999998642 111111 233677877765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 103 ~~ 104 (142)
T 2fbi_A 103 CF 104 (142)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 396
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=93.24 E-value=0.044 Score=43.50 Aligned_cols=68 Identities=10% Similarity=0.016 Sum_probs=48.4
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+..+ ++.|++ ...+.+|+.++.
T Consensus 42 ~q~~iL~~l~~~--------~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~-~~~D~R-~~~~~LT~~G~~ 107 (149)
T 4hbl_A 42 SQYLVMLTLWEE--------NPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRER-QQSDKR-QLIITLTDNGQQ 107 (149)
T ss_dssp HHHHHHHHHHHS--------SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC-----------CEEEECSHHHH
T ss_pred HHHHHHHHHHHC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCC-CCCCcc-eeeeeECHHHHH
Confidence 456677777765 38999999999999 9999999999999999999642 222221 234677777764
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 108 ~~ 109 (149)
T 4hbl_A 108 QQ 109 (149)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 397
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=93.23 E-value=0.16 Score=38.54 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=54.3
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC--------CCCCCCCcchHHHHHHHHhcCCceeccccCCCCC
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL--------PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNG 105 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g 105 (370)
+.++-.+++-|+..|..+ |.+--+|.+.+ ++ ++..+.+.|+.|...|+|+....+..+|
T Consensus 7 ~~~~g~l~~~IL~~L~~~---------~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~ 73 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQG---------DNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQG 73 (116)
T ss_dssp HHHHHHHHHHHHHHHHHC---------CBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----
T ss_pred HHHhchHHHHHHHHHHhC---------CCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCC
Confidence 455555667777788876 88988998876 57 8999999999999999999642111233
Q ss_pred ccccceecchhhhhhh
Q 017495 106 QVERVYGAAPICKFLI 121 (370)
Q Consensus 106 ~~~~~y~~~~~~~~l~ 121 (370)
+....|++|+.++...
T Consensus 74 ~~rk~Y~LT~~G~~~l 89 (116)
T 3f8b_A 74 GRRKYYRLTEIGHENM 89 (116)
T ss_dssp CCEEEEEECHHHHHHH
T ss_pred CCceEEEECHHHHHHH
Confidence 3356699999887443
No 398
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=93.21 E-value=0.048 Score=41.54 Aligned_cols=47 Identities=11% Similarity=0.184 Sum_probs=40.0
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
-.++.++..|..+ +.++.+||+.+++ ++..+.+.|+.|...|++...
T Consensus 32 ~~~~~il~~L~~~---------~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 32 PSRLMILTQLRNG---------PLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HHHHHHHHHHHHC---------CCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3456666777665 6899999999999 999999999999999999853
No 399
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=93.20 E-value=0.06 Score=39.80 Aligned_cols=47 Identities=15% Similarity=0.216 Sum_probs=40.1
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.++.|+..|... ++.|..+||+.+++ ++..+.+.|+.|...|+|...
T Consensus 21 ~~~~il~~l~~~--------~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 21 SDVRIYSLLLER--------GGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHH--------CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 355567777654 37999999999999 999999999999999999964
No 400
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=93.11 E-value=0.1 Score=40.48 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=31.8
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
..|.++||+.+++ ++..+.+.|+.|...|+|...
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 4799999999999 999999999999999999963
No 401
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=93.09 E-value=0.1 Score=46.84 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=38.9
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS 248 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~ 248 (370)
.+..++..+. .+...|||++||+|..+..+.+. +.+++++|+ +.+++.+++
T Consensus 224 l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 224 LAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 4455555543 35679999999999999998874 568999998 888776654
No 402
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=93.08 E-value=0.078 Score=41.97 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=47.5
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
..++.++..|... ++++|..+||+.+++ ++..+.++++.|+..|+|+... .+.|++ .-.+.+|+.++
T Consensus 39 ~~q~~vL~~l~~~-------~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~LT~~G~ 105 (150)
T 3fm5_A 39 VRSYSVLVLACEQ-------AEGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTL-DPSDRR-NKLIAATEEGR 105 (150)
T ss_dssp HHHHHHHHHHHHS-------TTCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-------------CEECHHHH
T ss_pred HHHHHHHHHHHhC-------CCCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeC-Cccccc-hheeeECHHHH
Confidence 3455667777644 136899999999999 9999999999999999999642 112211 12366777776
Q ss_pred hhh
Q 017495 119 FLI 121 (370)
Q Consensus 119 ~l~ 121 (370)
.+.
T Consensus 106 ~~~ 108 (150)
T 3fm5_A 106 RLR 108 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 403
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=93.06 E-value=0.061 Score=42.19 Aligned_cols=68 Identities=9% Similarity=0.050 Sum_probs=50.6
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 34 ~~~~iL~~l~~~--------~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~-~~~d~r-~~~~~lT~~G~~ 99 (145)
T 2a61_A 34 AQFDILQKIYFE--------GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTP-DPADRR-AYFLVITRKGEE 99 (145)
T ss_dssp HHHHHHHHHHHH--------CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecC-CCCCCc-eEEEEECHHHHH
Confidence 456677777765 37999999999999 9999999999999999999742 111111 224677887765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 100 ~~ 101 (145)
T 2a61_A 100 VI 101 (145)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 404
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=93.05 E-value=0.069 Score=43.31 Aligned_cols=69 Identities=13% Similarity=0.044 Sum_probs=48.8
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++++|..+||+.+++ ++..+.++++.|+..|+|+... +..|++ ...+.+|+.++.
T Consensus 54 ~q~~vL~~L~~~-------~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~ 120 (166)
T 3deu_A 54 THWVTLHNIHQL-------PPDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQT-CASDRR-AKRIKLTEKAEP 120 (166)
T ss_dssp HHHHHHHHHHHS-------CSSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CEEEECGGGHH
T ss_pred HHHHHHHHHHHc-------CCCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeC-CCCCCC-eeEEEECHHHHH
Confidence 456677778762 137999999999999 9999999999999999999742 212221 234667777765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 121 ~~ 122 (166)
T 3deu_A 121 LI 122 (166)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 405
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=93.02 E-value=0.12 Score=40.43 Aligned_cols=49 Identities=20% Similarity=0.049 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
++.|..+||+.+++ ++..+.+.|+.|...|+|... .+.|.+|+.+..+.
T Consensus 30 ~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~---------~~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 30 EGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK---------EDGVWITNNGTRSI 78 (139)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec---------CCeEEEChhHHHHH
Confidence 37999999999999 999999999999999999963 25688888776443
No 406
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=92.86 E-value=0.23 Score=39.56 Aligned_cols=68 Identities=9% Similarity=0.083 Sum_probs=48.1
Q ss_pred HhcChHHHHh-hcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 40 IELNVIDIIS-AASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 40 ~~lglfd~L~-~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
.++.++..|. .. ++++..+||+.+++ ++..+.++++.|+..|+|+... .+.|++ ...+.+|+.+.
T Consensus 48 ~~~~iL~~L~~~~--------~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~~~lT~~G~ 113 (160)
T 3boq_A 48 AKFDAMAQLARNP--------DGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAM-SADDRR-SFSAKLTDAGL 113 (160)
T ss_dssp HHHHHHHHHHHCT--------TCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC----------CEEEECHHHH
T ss_pred HHHHHHHHHHHcC--------CCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeec-CCCCCC-eEEEEEChhHH
Confidence 3556788883 33 38999999999999 9999999999999999999642 112221 23366777776
Q ss_pred hhh
Q 017495 119 FLI 121 (370)
Q Consensus 119 ~l~ 121 (370)
.+.
T Consensus 114 ~~~ 116 (160)
T 3boq_A 114 TTF 116 (160)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 407
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=92.82 E-value=0.093 Score=38.19 Aligned_cols=52 Identities=8% Similarity=0.134 Sum_probs=41.1
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
++|..+||+.+++ ++..+.++++.|...|+|... .|++ ...|.+|+.+..+.
T Consensus 30 ~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~----~d~R-~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECE----LEGR-TKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEE----EETT-EEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCC----CCCC-eEEEEEChhHHHHH
Confidence 4899999999999 999999999999999999421 2221 23588898887554
No 408
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=92.80 E-value=0.25 Score=39.82 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=47.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... | ++++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 47 ~q~~vL~~l~~~-----~-~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~ 114 (168)
T 3u2r_A 47 QQYNTLRLLRSV-----H-PEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTR-KPENRR-VVEVALTDAGLK 114 (168)
T ss_dssp HHHHHHHHHHHH-----T-TSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHH
T ss_pred HHHHHHHHHHhc-----C-CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecC-CCCCCC-eeEeEECHHHHH
Confidence 455567777663 1 138999999999999 9999999999999999999742 222211 124667877765
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 115 ~~~ 117 (168)
T 3u2r_A 115 LLK 117 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 409
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=92.73 E-value=0.031 Score=48.18 Aligned_cols=73 Identities=8% Similarity=0.162 Sum_probs=52.7
Q ss_pred HHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCC-CCccccce
Q 017495 33 PMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGD-NGQVERVY 111 (370)
Q Consensus 33 ~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~-~g~~~~~y 111 (370)
..+|..-.++.|+..|..+ |.++.+||+.+|+ ++..+.+.|+.|...|+|.....++. .|+....|
T Consensus 6 lkaL~~~~R~~IL~~L~~g---------~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y 72 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTCM---------ECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYY 72 (232)
T ss_dssp HHHHTSHHHHHHHHHHTTT---------TTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEE
T ss_pred HHHhCCHHHHHHHHHHHhC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEE
Confidence 4455556677788888865 8999999999999 99999999999999999996211110 11112457
Q ss_pred ecchhhh
Q 017495 112 GAAPICK 118 (370)
Q Consensus 112 ~~~~~~~ 118 (370)
++++.+.
T Consensus 73 ~Lt~~~~ 79 (232)
T 2qlz_A 73 KISIAKS 79 (232)
T ss_dssp EECCCEE
T ss_pred EEccchh
Confidence 7776543
No 410
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=92.60 E-value=0.13 Score=39.06 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=55.4
Q ss_pred HHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC------CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCc
Q 017495 33 PMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL------PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQ 106 (370)
Q Consensus 33 ~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~ 106 (370)
.+.++-.+++-|+..|..+ |.+--+|++.+ ++ ++..+...|+-|...|+|+....+.+.|+
T Consensus 7 ~~l~~g~l~~~IL~lL~~~---------p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~ 73 (116)
T 3hhh_A 7 TELLKGILEGLVLAIIQRK---------ETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGP 73 (116)
T ss_dssp HHHHTTHHHHHHHHHHHHS---------CBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--C
T ss_pred HHHHhhhHHHHHHHHHhcC---------CCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCC
Confidence 3445555666677788876 89999999987 57 89999999999999999986422112344
Q ss_pred cccceecchhhhhhh
Q 017495 107 VERVYGAAPICKFLI 121 (370)
Q Consensus 107 ~~~~y~~~~~~~~l~ 121 (370)
....|++|+.++...
T Consensus 74 ~rk~Y~lT~~G~~~l 88 (116)
T 3hhh_A 74 MRKFYRLTSSGEAEL 88 (116)
T ss_dssp EEEEEEECHHHHHHH
T ss_pred CceEEEECHHHHHHH
Confidence 456799999987443
No 411
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=92.52 E-value=0.096 Score=41.55 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=66.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehh-hHHHhCCCCCCCeEEeccCCCCCCC-----C-C
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLP-HVLANAPSFPGVEHVGGDMFENVPR-----G-D 267 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p-~~~~~a~~~~rv~~~~~D~~~~~p~-----~-D 267 (370)
+.+.+..+.+ -..-|||+|=|+|..=.+|.+.+|+..+.++|.. .+-.... -+.-.++.||+.+..|. + .
T Consensus 30 L~~a~~~v~~--~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~-P~~e~~ilGdi~~tL~~~~~r~g~~ 106 (174)
T 3iht_A 30 LEHAIAQTAG--LSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDST-PPEAQLILGDIRETLPATLERFGAT 106 (174)
T ss_dssp HHHHHHHTTT--CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGC-CCGGGEEESCHHHHHHHHHHHHCSC
T ss_pred HHHHHHHhcC--CCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCC-CchHheecccHHHHHHHHHHhcCCc
Confidence 3444554442 3467999999999999999999999999999952 1111111 13357888888763221 2 3
Q ss_pred EEEecccccCCChhHHHHHHHH----HHHhCCCCcEEEEEeec
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKN----CWEALPENGKVIIVESI 306 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~----~~~~L~pgG~lli~e~~ 306 (370)
+.+...=|-....+.-...... +..+|.|||.++-..+.
T Consensus 107 a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl 149 (174)
T 3iht_A 107 ASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM 149 (174)
T ss_dssp EEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred eEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 3333332222223332333333 45677889988876655
No 412
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=92.51 E-value=0.11 Score=39.66 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=56.9
Q ss_pred HHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCC------CCCCCCcchHHHHHHHHhcCCceeccccCCCCCc
Q 017495 33 PMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLP------TKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQ 106 (370)
Q Consensus 33 ~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~ 106 (370)
.+.+.-.+++-|+..|..+ |.+.-+|++.+. + ++..+.+.|+.|...|+|+....+...|+
T Consensus 8 ~~l~~g~l~~~IL~lL~~~---------p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~ 74 (117)
T 3elk_A 8 ERILHGLITLYILKELVKR---------PMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQ 74 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHS---------CEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCC
T ss_pred HHHHhhHHHHHHHHHHHcC---------CCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCC
Confidence 3455566777788888876 899999998876 7 78999999999999999996432112233
Q ss_pred cccceecchhhh-hhhc
Q 017495 107 VERVYGAAPICK-FLIK 122 (370)
Q Consensus 107 ~~~~y~~~~~~~-~l~~ 122 (370)
....|++|+.++ .|..
T Consensus 75 ~rk~Y~lT~~G~~~l~~ 91 (117)
T 3elk_A 75 QLTVYHITDAGKKFLCD 91 (117)
T ss_dssp EEEEEEECHHHHHHHHH
T ss_pred CceEEEECHHHHHHHHH
Confidence 356799999997 4443
No 413
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=92.48 E-value=0.087 Score=40.60 Aligned_cols=69 Identities=14% Similarity=0.090 Sum_probs=49.2
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
++.++..|... ++++.|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.+
T Consensus 39 q~~vL~~l~~~------~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~i~LT~~G~~~ 106 (127)
T 2frh_A 39 EFAVLTYISEN------KEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKR-NEHDER-TVLILVNAQQRKK 106 (127)
T ss_dssp HHHHHHHHHHT------CCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBC-CSSSSC-CCEEECCSHHHHH
T ss_pred HHHHHHHHHhc------cCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHH
Confidence 44566666542 1137999999999999 9999999999999999999742 223322 2346678777654
Q ss_pred h
Q 017495 121 I 121 (370)
Q Consensus 121 ~ 121 (370)
.
T Consensus 107 ~ 107 (127)
T 2frh_A 107 I 107 (127)
T ss_dssp H
T ss_pred H
Confidence 4
No 414
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=92.39 E-value=0.067 Score=42.47 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ .....+|+.++.+.
T Consensus 50 ~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 50 GELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRP-NPNDGR-GTLATITDKGREVV 105 (147)
T ss_dssp GEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CC-----CEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEee-cCCcCc-eeEEEECHHHHHHH
Confidence 37999999999999 9999999999999999999752 223221 12366787776554
No 415
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=92.18 E-value=0.21 Score=39.78 Aligned_cols=49 Identities=20% Similarity=0.080 Sum_probs=40.9
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.+..+||+.+++ ++..+++.|+.|...|+|.... +..+.+|+.+..+.
T Consensus 54 ~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~~--------~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 54 EARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMIP--------WRGVFLTAEGEKLA 102 (155)
T ss_dssp CCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEET--------TTEEEECHHHHHHH
T ss_pred CcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEec--------CCceEEChhHHHHH
Confidence 7899999999999 9999999999999999998631 24577887776443
No 416
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=92.05 E-value=0.22 Score=39.62 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=48.7
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
++.++..|... + ++.+..+||+.+++ ++..+.++++.|+..|+|+..+ ++.|++ .....+|+.++.+
T Consensus 33 q~~vL~~L~~~-----~--~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~-~~~DrR-~~~l~LT~~G~~~ 99 (151)
T 4aik_A 33 HWVTLYNINRL-----P--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHT-SANDRR-AKRIKLTEQSSPI 99 (151)
T ss_dssp HHHHHHHHHHS-----C--TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECGGGHHH
T ss_pred HHHHHHHHHHc-----C--CCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeec-CCCCCc-chhhhcCHHHHHH
Confidence 34456666543 2 26788999999999 9999999999999999999742 333322 2346678877655
Q ss_pred h
Q 017495 121 I 121 (370)
Q Consensus 121 ~ 121 (370)
.
T Consensus 100 ~ 100 (151)
T 4aik_A 100 I 100 (151)
T ss_dssp H
T ss_pred H
Confidence 4
No 417
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=92.03 E-value=0.13 Score=42.95 Aligned_cols=52 Identities=10% Similarity=0.206 Sum_probs=44.2
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.++..-.+..|+..|.++ +.|..+||+.+|+ ++..+++.|+.|...|++...
T Consensus 15 k~l~d~~~~~IL~~L~~~---------~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 15 KVMLEDTRRKILKLLRNK---------EMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHSHHHHHHHHHHTTC---------CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHcC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 344445667788888754 8999999999999 999999999999999999863
No 418
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=92.03 E-value=0.17 Score=41.90 Aligned_cols=73 Identities=12% Similarity=0.072 Sum_probs=53.6
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
+..++.++..|... |++++|..+||+.+++ ++..+.++++.|+..|+|+... .+.|++ ...+.+|+.+
T Consensus 40 t~~q~~vL~~L~~~------~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G 107 (189)
T 3nqo_A 40 TSRQYMTILSILHL------PEEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIP-SPHDKR-AINVKVTDLG 107 (189)
T ss_dssp CHHHHHHHHHHHHS------CGGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCSS-CEEEEECHHH
T ss_pred CHHHHHHHHHHHhc------cCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHHH
Confidence 44566777777742 1138999999999999 9999999999999999999742 223322 2447788888
Q ss_pred hhhhc
Q 017495 118 KFLIK 122 (370)
Q Consensus 118 ~~l~~ 122 (370)
+.+..
T Consensus 108 ~~~~~ 112 (189)
T 3nqo_A 108 KKVMV 112 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 75443
No 419
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=91.91 E-value=0.079 Score=41.56 Aligned_cols=67 Identities=10% Similarity=0.160 Sum_probs=50.2
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++ |..+||+.+++ ++..+.+.++.|+..|+|.... ++.|++ ...+.+|+.++.
T Consensus 38 ~~~~iL~~l~~~--------~~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~LT~~G~~ 102 (144)
T 3f3x_A 38 LDFSILKATSEE--------PR-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIR-DSKDRR-IVIVEITPKGRQ 102 (144)
T ss_dssp HHHHHHHHHHHS--------CE-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHH
T ss_pred HHHHHHHHHHHC--------CC-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecc-CCCCCc-eEEEEECHHHHH
Confidence 456778888776 25 99999999999 9999999999999999999742 112111 124778888775
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 103 ~~ 104 (144)
T 3f3x_A 103 VL 104 (144)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 420
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=91.85 E-value=0.097 Score=40.23 Aligned_cols=48 Identities=19% Similarity=0.240 Sum_probs=40.0
Q ss_pred HhcChHHHHhhcccccCCCCCC-CCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 40 IELNVIDIISAASAAEDGHGEL-LSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~-~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.+..|+..|... + +| +|+.|||+.+++ +...+.|.|+.|...|+|...
T Consensus 27 ~e~~il~~L~~~-----~--~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 27 ADLNVMKSFLNE-----P--DRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHS-----T--TCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHC-----C--CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 355577777654 1 35 899999999999 999999999999999999864
No 421
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=91.80 E-value=0.13 Score=40.63 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=39.7
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+..|++.|... ++.|..+||+.+|+ ++..+.+.|+.|...|++..
T Consensus 7 d~~il~~L~~~--------~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 7 DLNIIEELKKD--------SRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHC--------SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 44577888765 48999999999999 99999999999999999984
No 422
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=91.78 E-value=0.1 Score=41.41 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=40.4
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..|+..|... ++.+..+||+.+|+ ++..+.+.|+.|...|++..
T Consensus 4 ~~~~il~~L~~~--------~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 4 IDLRILKILQYN--------AKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHHTTC--------TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE
Confidence 355678888765 38999999999999 99999999999999999985
No 423
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=91.60 E-value=0.14 Score=40.76 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=39.5
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+..|+..|... ++.|..+||+.+|+ ++..+.+.|+.|...|++..
T Consensus 9 ~~~iL~~L~~~--------~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 9 DRILVRELAAD--------GRATLSELATRAGL----SVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHHHHC--------TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 45677788765 48999999999999 99999999999999999974
No 424
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=91.52 E-value=0.11 Score=38.86 Aligned_cols=47 Identities=19% Similarity=0.279 Sum_probs=38.3
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
++.|+..|... +.++|..+||+.+|+ +...+++.|..|...|+|...
T Consensus 20 ~l~Il~~l~~~-------g~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDK-------GTEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHH-------CSCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHc-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 34566666432 137899999999999 999999999999999999863
No 425
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=91.33 E-value=0.15 Score=41.15 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=39.7
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+..|++.|... +++|..|||+.+|+ ++..+++.|+.|...|++..
T Consensus 12 ~~~il~~L~~~--------~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 12 DIKILQVLQEN--------GRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHHHC--------TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEee
Confidence 44677888765 48999999999999 99999999999999999984
No 426
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=91.11 E-value=0.14 Score=40.57 Aligned_cols=74 Identities=9% Similarity=0.127 Sum_probs=52.6
Q ss_pred HHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC--------CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCc
Q 017495 35 VLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL--------PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQ 106 (370)
Q Consensus 35 ~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~ 106 (370)
++.--.++-|+..|..+ |.+..+|++.+ ++ ++..+.+.|+-|+..|+|+....+...|+
T Consensus 37 ~~~g~~~~~IL~~L~~~---------~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~ 103 (145)
T 1xma_A 37 VIRGYVDTIILSLLIEG---------DSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGK 103 (145)
T ss_dssp SGGGTHHHHHHHHHHHC---------CEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--C
T ss_pred HhcCcHHHHHHHHHHhC---------CCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCC
Confidence 34444566677777765 78988988887 57 99999999999999999986421101233
Q ss_pred cccceecchhhhhhh
Q 017495 107 VERVYGAAPICKFLI 121 (370)
Q Consensus 107 ~~~~y~~~~~~~~l~ 121 (370)
....|.+|+.++.+.
T Consensus 104 ~rk~Y~LT~~G~~~l 118 (145)
T 1xma_A 104 RRTYYRITPEGIKYY 118 (145)
T ss_dssp EEEEEEECHHHHHHH
T ss_pred CeEEEEECHHHHHHH
Confidence 345699999887444
No 427
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=90.92 E-value=0.18 Score=40.02 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=40.2
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..|+..|... ++.|..+||+.+|+ ++..+++.++.|...|++..
T Consensus 10 ~d~~il~~L~~~--------~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 10 VDMQLVKILSEN--------SRLTYRELADILNT----TRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHHC--------TTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 345677888765 48999999999999 99999999999999999984
No 428
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=90.80 E-value=0.17 Score=42.67 Aligned_cols=68 Identities=15% Similarity=-0.079 Sum_probs=49.4
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|.... ++.|++ ...+.+|+.++.
T Consensus 49 ~q~~iL~~L~~~--------~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~ 114 (207)
T 2fxa_A 49 NEHHILWIAYQL--------NGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSK-RLNDKR-NTYVQLTEEGTE 114 (207)
T ss_dssp HHHHHHHHHHHH--------TSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEEC-C-------CEEEECHHHHH
T ss_pred HHHHHHHHHHHC--------CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec-CCCCCc-eEEEEECHHHHH
Confidence 345567777665 37999999999999 9999999999999999999742 222221 234678888765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 115 ~~ 116 (207)
T 2fxa_A 115 VF 116 (207)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 429
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=90.77 E-value=0.19 Score=42.68 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
++++..+||+.+++ ++..+.++|+.|...|+++..+ ...+.+|+.++.+.
T Consensus 19 ~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~~--------~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 19 NKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKDK--------KAGYLLTDLGLKLV 68 (214)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET--------TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEec--------CCCeEECHHHHHHH
Confidence 48999999999999 9999999999999999999631 35688898887554
No 430
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=90.55 E-value=0.37 Score=34.97 Aligned_cols=61 Identities=10% Similarity=0.180 Sum_probs=48.2
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHH-HCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAA-RLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~-~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
++.|+-.|... ++.|+.+||+ ..++ +...+.|-++.|...|+|+.+ + ++ ..+|+.++.
T Consensus 18 QfsiL~~L~~~--------~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~~---~-----~D-l~LT~~G~~ 76 (95)
T 1bja_A 18 TATILITIAKK--------DFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEKS---G-----DG-LIITGEAQD 76 (95)
T ss_dssp HHHHHHHHHHS--------TTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEEE---T-----TE-EEECHHHHH
T ss_pred HHHHHHHHHHC--------CCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeecC---C-----CC-eeeCHhHHH
Confidence 34456667665 3899999999 9999 999999999999999999832 1 34 888988875
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 77 ~l~ 79 (95)
T 1bja_A 77 IIS 79 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 431
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=90.54 E-value=0.16 Score=40.44 Aligned_cols=45 Identities=7% Similarity=0.170 Sum_probs=39.7
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+..|+..|... ++.|..+||+.+|+ ++..+++.|+.|...|++..
T Consensus 10 d~~il~~L~~~--------~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 10 DRGILEALMGN--------ARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHC--------TTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcce
Confidence 44577888765 48999999999999 99999999999999999984
No 432
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=90.50 E-value=0.25 Score=36.93 Aligned_cols=70 Identities=17% Similarity=0.114 Sum_probs=51.0
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHH----CCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAAR----LPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~----~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
-.+++-|+..|..+ |.+--+|++. +++ ++..+.+.|+.|...|+|+....+ .+|+....|++
T Consensus 8 g~l~~~IL~~L~~~---------~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~-~~~r~r~~y~L 73 (108)
T 3l7w_A 8 LLIEYLILAIVSKH---------DSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQE-HQGRRRKYYHL 73 (108)
T ss_dssp HHHHHHHHHHHHHS---------CEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEE-ETTEEEEEEEE
T ss_pred HHHHHHHHHHHHcC---------CCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeec-CCCCcceEEEE
Confidence 34556667777776 7787787777 578 999999999999999999974211 13433456999
Q ss_pred chhhhhhh
Q 017495 114 APICKFLI 121 (370)
Q Consensus 114 ~~~~~~l~ 121 (370)
|+.++...
T Consensus 74 T~~G~~~l 81 (108)
T 3l7w_A 74 TDSGEKHL 81 (108)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99887444
No 433
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=90.43 E-value=0.18 Score=38.24 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=50.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCC------CCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLP------TKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
+++-|+..|..+ |.+--+|++.+. + ++..+.+.|+-|...|+|+....+.+.|+....|++
T Consensus 10 l~~~IL~~L~~~---------~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~L 76 (115)
T 4esb_A 10 LEGCILYIISQE---------EVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHI 76 (115)
T ss_dssp HHHHHHHHHHHS---------CEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEE
T ss_pred HHHHHHHHHHcC---------CCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEE
Confidence 344566677765 889999998874 7 899999999999999999864211122444556999
Q ss_pred chhhhhhh
Q 017495 114 APICKFLI 121 (370)
Q Consensus 114 ~~~~~~l~ 121 (370)
|+.++...
T Consensus 77 T~~G~~~l 84 (115)
T 4esb_A 77 TDKGLEQL 84 (115)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99887443
No 434
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=90.31 E-value=0.15 Score=40.64 Aligned_cols=45 Identities=11% Similarity=0.131 Sum_probs=39.7
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+..|++.|... ++.|..+||+.+|+ ++..+++.|+.|...|++..
T Consensus 9 ~~~il~~L~~~--------~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 9 DKKIIKILQND--------GKAPLREISKITGL----AESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHC--------TTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 45677888765 38999999999999 99999999999999999984
No 435
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=90.27 E-value=0.18 Score=40.75 Aligned_cols=46 Identities=11% Similarity=0.227 Sum_probs=40.6
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..|++.|... +++|..+||+++|+ ++..+++-++.|...|++..
T Consensus 4 ~d~~il~~L~~~--------~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQED--------STLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTC--------SCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHC--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 355678888765 48999999999999 99999999999999999984
No 436
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=90.21 E-value=0.2 Score=39.64 Aligned_cols=43 Identities=33% Similarity=0.356 Sum_probs=36.5
Q ss_pred CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 63 SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 63 t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
|.++||+.+++ ++..++++|..|...|+|... .| .+.|.+...
T Consensus 25 s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~-----rG--~GGy~Lar~ 67 (145)
T 1xd7_A 25 SSEIIADSVNT----NPVVVRRMISLLKKADILTSR-----AG--VPGASLKKD 67 (145)
T ss_dssp CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC-----SS--SSSCEESSC
T ss_pred CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEee-----cC--CCCceecCC
Confidence 99999999999 999999999999999999863 23 356777654
No 437
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=90.15 E-value=0.22 Score=40.63 Aligned_cols=46 Identities=11% Similarity=0.246 Sum_probs=40.1
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..|+..|... ++.|..+||+++|+ ++..+.+.|+.|...|++..
T Consensus 18 ~d~~IL~~L~~~--------~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 18 LDRNILRLLKKD--------ARLTISELSEQLKK----PESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHHHHC--------TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence 344678888765 38999999999999 99999999999999999974
No 438
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=90.12 E-value=0.19 Score=37.03 Aligned_cols=34 Identities=9% Similarity=0.148 Sum_probs=32.5
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+.|..+||+.+|+ ++..+.+.|+.|...|++...
T Consensus 36 ~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 36 PITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 7999999999999 999999999999999999964
No 439
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=90.04 E-value=0.29 Score=38.27 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=41.0
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
..|.++||+++++ ++.-+.++|..|...|+|....+...+|+....|.++|.-.
T Consensus 51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~e 104 (135)
T 2v79_A 51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWG 104 (135)
T ss_dssp SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHH
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHH
Confidence 5799999999999 99999999999999999997322222333345676766543
No 440
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=90.04 E-value=0.2 Score=39.65 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+++|..+||+.+++ ++..+.++++.|+..|+|+.. .+.|++ .....+|+.++.+.
T Consensus 51 ~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~--~~~DrR-~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 51 IDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVM--AGADAR-CKRIELTAKGRAAL 105 (148)
T ss_dssp ---CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC--------------CCBCHHHHHHH
T ss_pred CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee--CCCCCC-eeEEEECHHHHHHH
Confidence 47999999999999 999999999999999999642 223322 12356677666444
No 441
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=90.01 E-value=0.2 Score=40.95 Aligned_cols=46 Identities=13% Similarity=0.157 Sum_probs=40.6
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..|+..|... ++.+..|||+++|+ ++..+++.|+.|...|++..
T Consensus 28 ~d~~IL~~L~~~--------~~~s~~eLA~~lgl----S~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 28 IDKKIIKILQND--------GKAPLREISKITGL----AESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp HHHHHHHHHHHC--------TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 455788888765 38999999999999 99999999999999999984
No 442
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=89.96 E-value=0.18 Score=41.40 Aligned_cols=71 Identities=8% Similarity=0.058 Sum_probs=48.6
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.+++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 70 ~~~~iL~~L~~~-----~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~~~LT~~G~~ 138 (181)
T 2fbk_A 70 AGWDLLLTLYRS-----APPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERRE-DERDRR-SASIRLTPQGRA 138 (181)
T ss_dssp HHHHHHHHHHHH-----CCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC---------CCBEECHHHHH
T ss_pred HHHHHHHHHHHc-----CCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecC-CCCCCC-eeEEEECHHHHH
Confidence 355677888765 21013999999999999 9999999999999999999642 112211 234677777765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 139 ~~ 140 (181)
T 2fbk_A 139 LV 140 (181)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 443
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=89.86 E-value=0.17 Score=39.64 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=38.9
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+..|+..|..+ ++.+..+||+.+|+ ++..+++.|+.|...|++..
T Consensus 6 ~~~il~~L~~~--------~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 6 DKIILEILEKD--------ARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHHHHHC--------TTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEec
Confidence 44567777654 37999999999999 99999999999999999974
No 444
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=89.81 E-value=0.32 Score=33.42 Aligned_cols=48 Identities=10% Similarity=0.207 Sum_probs=41.4
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.+-.|++.|.+. +.|++..+||+.+|+ +..-+.+.|..|-..|.|...
T Consensus 20 ~eekVLe~Lkea-------G~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~SP 67 (80)
T 2lnb_A 20 LEQRILQVLTEA-------GSPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSLT 67 (80)
T ss_dssp HHHHHHHHHHHH-------TSCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc-------CCCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccCC
Confidence 345678888776 359999999999999 999999999999999999863
No 445
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=89.59 E-value=0.36 Score=39.65 Aligned_cols=65 Identities=12% Similarity=0.235 Sum_probs=46.9
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHC--------CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCcccccee
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARL--------PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYG 112 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~ 112 (370)
++-|+..|..+ |.+.-+|++.+ ++ ++..+.+.|+-|...|+|+....+...|+....|+
T Consensus 4 ~~~iL~lL~~~---------~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~ 70 (179)
T 1yg2_A 4 PHVILTVLSTR---------DATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYS 70 (179)
T ss_dssp HHHHHHHHHHC---------CBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEE
T ss_pred HHHHHHHHhcC---------CCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEE
Confidence 45567777766 89999999988 57 89999999999999999996421111122245699
Q ss_pred cchhhh
Q 017495 113 AAPICK 118 (370)
Q Consensus 113 ~~~~~~ 118 (370)
+|+.++
T Consensus 71 lT~~G~ 76 (179)
T 1yg2_A 71 ITQAGR 76 (179)
T ss_dssp ECHHHH
T ss_pred eChHHH
Confidence 999986
No 446
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=89.18 E-value=0.3 Score=37.84 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=42.5
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-----CCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARL-----PTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+-.+.-|++.|... +++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+.
T Consensus 10 T~qR~~Il~~l~~~-------~~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 10 TRQRAAISTLLETL-------DDFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHC-------CSCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEE
T ss_pred CHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEE
Confidence 55677788888754 2489999999998 67 899999999999999999974
No 447
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=88.94 E-value=0.14 Score=38.97 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=37.8
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCC----CCCCCCcchHHHHHHHHhcCCceecc
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLP----TKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~----~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+..|+..|... ++.|..+||+.++ + ++..+.++|+.|+..|+|...
T Consensus 12 ~~~vL~~l~~~--------~~~t~~ela~~l~~~~~~----s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 12 EWEVMNIIWMK--------KYASANNIIEEIQMQKDW----SPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHHH--------SSEEHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhC--------CCcCHHHHHHHHhccCCC----cHhhHHHHHHHHHHCCCeEEE
Confidence 34455666554 3899999999998 6 799999999999999999964
No 448
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=88.78 E-value=0.2 Score=35.18 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=38.5
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCC----CCCCCCcchHHHHHHHHhcCCceecc
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLP----TKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~----~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.+..|++.|... ++.|+.||++.++ + ++..+.++|+.|+..|+|...
T Consensus 10 ~e~~vL~~L~~~--------~~~t~~ei~~~l~~~~~~----s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKH--------SSINTNEVIKELSKTSTW----SPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTS--------SSEEHHHHHHHHHHHSCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC--------CCCCHHHHHHHHhhcCCc----cHHHHHHHHHHHHHCCCeEEE
Confidence 345566777654 3899999999986 6 788999999999999999964
No 449
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=87.99 E-value=0.97 Score=35.14 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=32.5
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
|+|..+||+.+++ ++..+.++|+.|...|+|+..
T Consensus 41 ~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 41 PLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 7999999999999 999999999999999999964
No 450
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=87.94 E-value=1.2 Score=38.78 Aligned_cols=94 Identities=23% Similarity=0.279 Sum_probs=64.9
Q ss_pred CCeEEEEcCcccHHHHHHHhh-------CCCCeEEEee----hhhH------------------------HH-------h
Q 017495 208 LKVLVDVGGGIGVTLGMITSR-------YPCIKGISFD----LPHV------------------------LA-------N 245 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D----~p~~------------------------~~-------~ 245 (370)
+..|+|+|+-.|..+..++.. .++-+++++| +|+. +. .
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 579999999999988886542 3678899999 2321 00 0
Q ss_pred CCC----CCCCeEEeccCCCC-------CCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 246 APS----FPGVEHVGGDMFEN-------VPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 246 a~~----~~rv~~~~~D~~~~-------~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.+. .++|+++.|++.+. .|.. |++++-.=++ +.....|..+...|+|||.+++-+.
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y----~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY----EPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH----HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc----chHHHHHHHHHHHhCCCcEEEEcCC
Confidence 011 16799999999762 2332 7777754322 3456789999999999999998553
No 451
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=87.47 E-value=2.3 Score=38.13 Aligned_cols=90 Identities=16% Similarity=0.107 Sum_probs=54.5
Q ss_pred CCeEEEEcCcc-c-HHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCCCCEEEecccccCCChhHH
Q 017495 208 LKVLVDVGGGI-G-VTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPRGDAIFLKWMLHGWTDEHC 283 (370)
Q Consensus 208 ~~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~~D~i~~~~vLh~~~d~~~ 283 (370)
..+|.=||+|. | .++..|.+......++++|. ++.++.+.+..-+.....|..+ .....|+|+++ .+....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVila-----vp~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEEC-----SCGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEe-----CCHHHH
Confidence 36899999883 3 44445555433338899997 6665554433222222233332 23345999875 344556
Q ss_pred HHHHHHHHHhCCCCcEEEE
Q 017495 284 LKLLKNCWEALPENGKVII 302 (370)
Q Consensus 284 ~~iL~~~~~~L~pgG~lli 302 (370)
..+++.+...++||..++-
T Consensus 108 ~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 108 REIAKKLSYILSEDATVTD 126 (314)
T ss_dssp HHHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHhhccCCCcEEEE
Confidence 7889999999999875543
No 452
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=87.26 E-value=0.35 Score=33.29 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
...|+.+||+++|+ +..-+.|.|-.|...|+|...
T Consensus 28 ~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 28 DYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp CEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecC
Confidence 35999999999999 989999999999999999863
No 453
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=87.08 E-value=0.36 Score=35.46 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=39.6
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.+..|+..|... +++|+.||++.++.+.+.++.-+.++|+-|+..|+|.+.
T Consensus 36 ~e~~VL~~L~~~--------~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 36 AELIVMRVIWSL--------GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp SCSHHHHHHHHH--------SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHHhC--------CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 355677777665 389999999999751111578899999999999999964
No 454
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=86.41 E-value=0.64 Score=40.40 Aligned_cols=70 Identities=10% Similarity=0.073 Sum_probs=50.2
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.+..++..|... + ++++|..+||+.+++ ++..+.++++-|+..|+|++.+ +++|.+ .-...+|+.++.
T Consensus 159 ~q~~vL~~L~~~-----~-~~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~-~~~DrR-~~~i~LT~~G~~ 226 (250)
T 1p4x_A 159 VEFTILAIITSQ-----N-KNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKER-STEDER-KILIHMDDAQQD 226 (250)
T ss_dssp HHHHHHHHHHTT-----T-TCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEE-CSSSTT-CEEEECCHHHHH
T ss_pred HHHHHHHHHHhC-----C-CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeC-CCCCCC-eEEEEECHHHHH
Confidence 445567777654 1 125999999999999 9999999999999999999752 223321 123556777765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 227 ~~ 228 (250)
T 1p4x_A 227 HA 228 (250)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 455
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=86.40 E-value=0.59 Score=36.86 Aligned_cols=50 Identities=8% Similarity=0.066 Sum_probs=41.6
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-----CCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARL-----PTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+-.+.-|++.|... +.+.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+.
T Consensus 21 T~qR~~Il~~L~~~-------~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 21 TPQRHAILEYLVNS-------MAHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp CHHHHHHHHHHHHC-------SSCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEE
Confidence 34566688888764 2489999999998 66 889999999999999999974
No 456
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=86.37 E-value=0.59 Score=38.92 Aligned_cols=34 Identities=21% Similarity=0.025 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.|.|..|||+.+|+ +...+.+.|+.|...|++..
T Consensus 23 ~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~ 56 (196)
T 3k2z_A 23 YPPSVREIARRFRI----TPRGALLHLIALEKKGYIER 56 (196)
T ss_dssp SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEC
T ss_pred CCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEe
Confidence 37899999999999 87799999999999999985
No 457
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=86.19 E-value=1.3 Score=28.37 Aligned_cols=43 Identities=23% Similarity=0.168 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecch
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAP 115 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~ 115 (370)
+++|+.|+|...+. +-...+.-|..|-+.|-+.+. ..+|++.|
T Consensus 17 QGMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRKR---------sSRYrlkp 59 (68)
T 3i71_A 17 QGMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRKR---------SSRYRLKP 59 (68)
T ss_dssp TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------CCEEEECC
T ss_pred ccccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhhh---------ccccccCc
Confidence 46999999999999 999999999999999999963 46787765
No 458
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=85.61 E-value=0.66 Score=33.43 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=38.4
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+.|+..|... | +.+++..+||+++++ +..-+.++|+.|...|+|...
T Consensus 23 ~~Vl~~I~~~-----g-~~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 23 KLVYQIIEDA-----G-NKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHH-----C-TTCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHc-----C-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 4466666652 1 137999999999999 999999999999999999953
No 459
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=85.34 E-value=0.37 Score=35.42 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=31.6
Q ss_pred CCC-CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 60 ELL-SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 60 ~~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
..+ +..+||+.+++ +...+++.|+.|...|+|..
T Consensus 33 ~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~ 67 (102)
T 1v4r_A 33 DTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSS 67 (102)
T ss_dssp SBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEE
T ss_pred CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 356 99999999999 99999999999999999985
No 460
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=85.19 E-value=0.71 Score=33.90 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=35.7
Q ss_pred HHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhc
Q 017495 37 KSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLAS 91 (370)
Q Consensus 37 ~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~ 91 (370)
..+.++||+..|..+ ++|-.|||+.+|+ +...+.|.-++|-.
T Consensus 43 ~l~~R~~l~~~L~~g---------e~TQREIA~~lGi----S~stISRi~r~L~~ 84 (101)
T 1jhg_A 43 ALGTRVRIIEELLRG---------EMSQRELKNELGA----GIATITRGSNSLKA 84 (101)
T ss_dssp HHHHHHHHHHHHHHC---------CSCHHHHHHHHCC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---------CcCHHHHHHHHCC----ChhhhhHHHHHHHH
Confidence 345779999999886 7999999999999 99999998777643
No 461
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=84.96 E-value=0.65 Score=39.71 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=39.3
Q ss_pred CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 63 SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 63 t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+..+||+.+++ ++..+.++|+.|...|+++..+ +..+.+|+.++.+.
T Consensus 26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~~--------~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVAG--------DRHLELTEKGRALA 72 (230)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT--------TSCEEECHHHHHHH
T ss_pred cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC--------CccEEECHHHHHHH
Confidence 44999999999 9999999999999999999631 35688888876544
No 462
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=84.76 E-value=0.82 Score=29.36 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=38.4
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.|++.+... +|-+.++.++++.|+ +.+-+-.+|+.|++-|++..
T Consensus 14 ~lL~yIr~s-------GGildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 14 ELLDYIVNN-------GGFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHT-------TSEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHc-------CCEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeec
Confidence 467777765 468999999999999 99999999999999999974
No 463
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=84.35 E-value=0.94 Score=35.94 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=42.5
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-----CCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARL-----PTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+-.+.-|++.|... +.+.|++||.+.+ ++ +..-+.|.|+.|+..|++.+.
T Consensus 26 T~qR~~IL~~l~~~-------~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 26 SKQREEVVSVLYRS-------GTHLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVL 80 (150)
T ss_dssp HHHHHHHHHHHHHC-------SSCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEE
Confidence 56677789998764 2489999999998 67 889999999999999999974
No 464
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=83.96 E-value=1.6 Score=32.90 Aligned_cols=65 Identities=11% Similarity=0.187 Sum_probs=46.0
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHC-------CCCCCCCcchHHHHHHHHhcCCceeccccCC-CCCccccceecch
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARL-------PTKNPDAPFLLDRMLSLLASYDILRCSLQNG-DNGQVERVYGAAP 115 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~-------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~-~~g~~~~~y~~~~ 115 (370)
|+..|..+ |.+--+|.+.+ ++ ++..+...|+-|...|+|+....+. ..|+....|++|+
T Consensus 27 IL~lL~~~---------~~~Gyei~~~l~~~~~~~~i----s~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~ 93 (115)
T 2dql_A 27 ILYVLLQG---------ESYGTELIQQLETEHPTYRL----SDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSP 93 (115)
T ss_dssp HHHHHTTS---------CBCHHHHHHHHHHHCTTEEC----CHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECG
T ss_pred HHHHHHhC---------CCCHHHHHHHHHHHcCCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECH
Confidence 55566665 77777777665 47 8999999999999999998643221 1233356699999
Q ss_pred hhhhhh
Q 017495 116 ICKFLI 121 (370)
Q Consensus 116 ~~~~l~ 121 (370)
.++...
T Consensus 94 ~G~~~l 99 (115)
T 2dql_A 94 EWQHQA 99 (115)
T ss_dssp GGHHHH
T ss_pred HHHHHH
Confidence 887433
No 465
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=83.52 E-value=3.2 Score=31.58 Aligned_cols=76 Identities=12% Similarity=0.158 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-----CCCCCCCcchHHHHHHHHhcCCceeccccCCCCC
Q 017495 31 VLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL-----PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNG 105 (370)
Q Consensus 31 ~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g 105 (370)
+..+.++-.+++=|+..|. + |.+--+|.+.+ ++ ++..+...|+-|...|+|+....+ .++
T Consensus 13 ~~~~l~~g~l~~~IL~lL~-~---------p~~GYei~~~l~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~-~~~ 77 (123)
T 3ri2_A 13 MVLELRRGTLVMLVLSQLR-E---------PAYGYALVKSLADHGIPI----EANTLYPLMRRLESQGLLASEWDN-GGS 77 (123)
T ss_dssp HHHHHHHHHHHHHHHHHTT-S---------CEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTSEEEEEEE-CSS
T ss_pred HHHHHHhCcHHHHHHHHHc-C---------CCCHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEecc-CCC
Confidence 3445566666777777887 7 78888888774 77 899999999999999999864211 122
Q ss_pred ccccceecchhhhhhh
Q 017495 106 QVERVYGAAPICKFLI 121 (370)
Q Consensus 106 ~~~~~y~~~~~~~~l~ 121 (370)
+....|++|+.++...
T Consensus 78 ~~rk~Y~LT~~Gr~~l 93 (123)
T 3ri2_A 78 KPRKYYRTTDEGLRVL 93 (123)
T ss_dssp CEEEEEEECHHHHHHH
T ss_pred CCceEEEECHHHHHHH
Confidence 3345799999987443
No 466
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=83.49 E-value=0.71 Score=36.08 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=43.6
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecc
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAA 114 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~ 114 (370)
.+++.|..| ++|+.+||+++|+ +.....-.|..|+..|++.+.+ .|| -..|++.
T Consensus 15 ~ILE~Lk~G---------~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~Vk----~GK-~ayw~L~ 68 (165)
T 2vxz_A 15 DILALLADG---------CKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRVA----FGN-VALVCLS 68 (165)
T ss_dssp HHHHHHTTC---------CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEEE----ETT-EEEEESC
T ss_pred HHHHHHHhC---------CccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEEE----Ecc-EEEEEec
Confidence 467778854 8999999999999 9999999999999999999753 343 2445554
No 467
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=82.92 E-value=1.7 Score=40.62 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCcccHHHHHHH-hhCCC-CeEEEeeh-hhHHHhC
Q 017495 206 DGLKVLVDVGGGIGVTLGMIT-SRYPC-IKGISFDL-PHVLANA 246 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~-~~~p~-~~~~~~D~-p~~~~~a 246 (370)
++...|+|||++.|.++..++ +..+. .+++.++. |...+..
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L 268 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTL 268 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 567899999999999999988 56665 79999997 7665543
No 468
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=82.64 E-value=0.82 Score=35.56 Aligned_cols=50 Identities=12% Similarity=0.207 Sum_probs=41.0
Q ss_pred HHHhcChHHHHhhcccccCCCC-CCCCHHHHHHHC-----CCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 38 SAIELNVIDIISAASAAEDGHG-ELLSASKIAARL-----PTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~-~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+-.+.-|++.|... + .+.|++||.+.+ ++ +..-+.|.|+.|+..|++.+.
T Consensus 17 T~qR~~Il~~L~~~-------~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 72 (136)
T 1mzb_A 17 TLPRVKILQMLDSA-------EQRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRH 72 (136)
T ss_dssp CHHHHHHHHHHHCC--------CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHhC-------CCCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEE
Confidence 34566688888753 2 389999999998 66 889999999999999999974
No 469
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=82.11 E-value=1.2 Score=38.04 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=43.0
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhhc
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
+.|..++|+.+++ ++..+++.++.|...|+|.+.. + + ....+.+|+.++.+..
T Consensus 27 ~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~-~---~-R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 27 YLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTV-T---K-RGQILNITEKGLDVLY 79 (230)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-E---T-TEEEEEECHHHHHHHH
T ss_pred CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEE-c---C-CeEEEEECHHHHHHHH
Confidence 6899999999999 9999999999999999999641 0 0 0356888888875553
No 470
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=82.08 E-value=1.2 Score=36.80 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=40.4
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCc-eec
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDI-LRC 97 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~-l~~ 97 (370)
.--...|++.|... +.++|+.+||+.+++ +.+.+++-++.|...|+ +..
T Consensus 20 ~~R~~~Il~~L~~~-------~~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 20 QERLKSIVRILERS-------KEPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHHC-------SSCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHHHHc-------CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 34456688888753 136999999999999 99999999999999999 763
No 471
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=81.89 E-value=0.75 Score=42.56 Aligned_cols=75 Identities=12% Similarity=0.177 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecccc-CCCCCcccc
Q 017495 31 VLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQ-NGDNGQVER 109 (370)
Q Consensus 31 ~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~-~~~~g~~~~ 109 (370)
..+++++...+..|++.|. . +++|..|||+.+++ ++..+.++++.|.+.|++.+... +..-|+...
T Consensus 12 ~~~~~~~~~~~~~il~~l~-~--------~~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~ 78 (380)
T 2hoe_A 12 HMPKSVRAENISRILKRIM-K--------SPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTK 78 (380)
T ss_dssp ----------CCCSHHHHH-H--------SCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEECCC----CCCE
T ss_pred cCchhHHHHHHHHHHHHHH-c--------CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecCCCCCCCCCce
Confidence 4456777788888999999 6 38999999999999 99999999999999999987421 111133334
Q ss_pred ceecchhhh
Q 017495 110 VYGAAPICK 118 (370)
Q Consensus 110 ~y~~~~~~~ 118 (370)
.|..++...
T Consensus 79 ~l~~~~~~~ 87 (380)
T 2hoe_A 79 SLKISPNCA 87 (380)
T ss_dssp EEEECGGGC
T ss_pred EEEEccCCC
Confidence 466666544
No 472
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=81.70 E-value=0.94 Score=35.40 Aligned_cols=50 Identities=18% Similarity=0.107 Sum_probs=41.6
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-----CCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARL-----PTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+..+.-|++.|... +++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+.
T Consensus 13 T~qR~~Il~~L~~~-------~~h~sa~eI~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 67 (139)
T 3mwm_A 13 TRQRAAVSAALQEV-------EEFRSAQELHDMLKHKGDAV----GLTTVYRTLQSLADAGEVDVL 67 (139)
T ss_dssp HHHHHHHHHHHTTC-------SSCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTSSEEE
T ss_pred CHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 45677788988764 2489999999887 45 888999999999999999974
No 473
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=81.56 E-value=6.1 Score=36.50 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=27.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-------CCCeEEEeeh
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-------PCIKGISFDL 239 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~ 239 (370)
.+.+.+|+|+|+|.|.++..+++.. ..++++.++.
T Consensus 78 ~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~ 119 (387)
T 1zkd_A 78 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEI 119 (387)
T ss_dssp CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECC
T ss_pred CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEec
Confidence 3455789999999999998887652 3458888987
No 474
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=81.55 E-value=2.4 Score=36.85 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=37.7
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP 247 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~ 247 (370)
.+..++..+. .+...|||..||+|..+.+..+. +.+++++|+ +..++.++
T Consensus 201 l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 201 LIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 4555555543 45679999999999999988774 578999998 77766554
No 475
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=81.29 E-value=1.3 Score=33.16 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=32.0
Q ss_pred CCC-CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 60 ELL-SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 60 ~~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
..+ |..+||+.+|+ +..-+++-|+.|...|+|+..
T Consensus 31 ~~lPs~~~La~~~~v----Sr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 31 EMIPSIRKISTEYQI----NPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp CEECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 456 89999999999 999999999999999999863
No 476
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=80.33 E-value=1.2 Score=42.59 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=48.1
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
+..|+..|... +++++|..+||+++++ ++..+.|+++-|+..|+|++.+ +.+|.+ .-...+|+.++.+
T Consensus 406 q~~vl~~l~~~------~~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~-~~~D~R-~~~i~lT~~g~~~ 473 (487)
T 1hsj_A 406 EIYILNHILRS------ESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKR-SLQDER-TVIVYVTDTQKAN 473 (487)
T ss_dssp HHHHHHHHHTC------SCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEE-CCSSSS-CCEEECCSSHHHH
T ss_pred HHHHHHHHHhC------CCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecC-CCCCCC-eEEEEECHHHHHH
Confidence 44566777543 1247999999999999 9999999999999999999742 223211 1234556666544
Q ss_pred h
Q 017495 121 I 121 (370)
Q Consensus 121 ~ 121 (370)
.
T Consensus 474 ~ 474 (487)
T 1hsj_A 474 I 474 (487)
T ss_dssp H
T ss_pred H
Confidence 3
No 477
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=80.02 E-value=0.89 Score=33.48 Aligned_cols=33 Identities=30% Similarity=0.276 Sum_probs=31.2
Q ss_pred CC-CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LL-SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+ +..+||+.+++ +..-+++-|+.|...|+|..
T Consensus 42 ~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~ 75 (102)
T 2b0l_A 42 GLLVASKIADRVGI----TRSVIVNALRKLESAGVIES 75 (102)
T ss_dssp EEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 56 99999999999 99999999999999999986
No 478
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=79.97 E-value=7.7 Score=33.91 Aligned_cols=88 Identities=18% Similarity=0.113 Sum_probs=51.1
Q ss_pred CeEEEEcCcc-c-HHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCCCCCEEEecccccCCChhHHHH
Q 017495 209 KVLVDVGGGI-G-VTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLK 285 (370)
Q Consensus 209 ~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~ 285 (370)
.+|.=||+|. | .++..|.+..++..++++|. ++..+...+.........|..+.....|+|++. .++.....
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVila-----vp~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILA-----VPIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEEC-----SCHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEc-----CCHHHHHH
Confidence 4788899884 3 34445555544678888987 555544322211111222332222234998875 34555678
Q ss_pred HHHHHHHh-CCCCcEEE
Q 017495 286 LLKNCWEA-LPENGKVI 301 (370)
Q Consensus 286 iL~~~~~~-L~pgG~ll 301 (370)
+++.+... ++|+..++
T Consensus 82 v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 82 FIKILADLDLKEDVIIT 98 (290)
T ss_dssp HHHHHHTSCCCTTCEEE
T ss_pred HHHHHHhcCCCCCCEEE
Confidence 88888888 88876554
No 479
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=79.81 E-value=1.7 Score=36.12 Aligned_cols=48 Identities=23% Similarity=0.164 Sum_probs=40.7
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
|++..+||+.+++ .+..++..++-|...|+++.. .+...+|+.++.+.
T Consensus 30 ~V~~~~LA~~Lgv----S~~SV~~~lkkL~e~GLV~~~---------~~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 30 PLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK---------QRGHFLTLKGKEIR 77 (200)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-----------CEEECHHHHHHH
T ss_pred CccHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe---------CCCeEECHHHHHHH
Confidence 7999999999999 999999999999999999963 25678888876444
No 480
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=79.37 E-value=1.4 Score=37.42 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=40.1
Q ss_pred CCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 62 LSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 62 ~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
.+..+||+.+++ ++..+.++++.|...|++++.+ +..+.+|+.++.+.
T Consensus 25 ~~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r~~--------~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 25 PLRARIAERLEQ----SGPTVSQTVARMERDGLVVVAS--------DRSLQMTPTGRTLA 72 (226)
T ss_dssp CBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT--------TSBEEECHHHHHHH
T ss_pred ccHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeC--------CCCeEECHHHHHHH
Confidence 355999999999 9999999999999999999631 35688898887544
No 481
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=79.17 E-value=2.9 Score=36.82 Aligned_cols=97 Identities=12% Similarity=-0.026 Sum_probs=66.7
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----CCCeEEeccCCCC----CC--C-CCEEEecccc
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----PGVEHVGGDMFEN----VP--R-GDAIFLKWML 275 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~~----~p--~-~D~i~~~~vL 275 (370)
...+||+=+|+|.++.++++ +.-+++.+|. +..++..+++ .+++++..|.+.. .| + .|+|++-=-.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 45689999999999999988 4468899998 7776655543 5789999997551 12 2 3999884322
Q ss_pred cCCChhHHHHHHHHHHHh--CCCCcEEEEEeecCC
Q 017495 276 HGWTDEHCLKLLKNCWEA--LPENGKVIIVESILP 308 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~--L~pgG~lli~e~~~~ 308 (370)
.. .++..++++.+.+. +.|+|.++|-=++..
T Consensus 170 e~--k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 170 ER--KEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN 202 (283)
T ss_dssp CS--TTHHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred CC--CcHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence 21 12445666666653 458888888766654
No 482
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=79.07 E-value=2.1 Score=32.95 Aligned_cols=36 Identities=25% Similarity=0.201 Sum_probs=32.6
Q ss_pred CCCC-CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 59 GELL-SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 59 ~~~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
|..+ |..+||+.+|+ +..-+++-|+.|...|+|...
T Consensus 25 G~~LPse~~La~~~gv----Sr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRI----NPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp TSCBCCHHHHHHHTTC----CHHHHHHHHHHHHTTTSEEEE
T ss_pred CCcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 3467 89999999999 999999999999999999863
No 483
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=79.03 E-value=1.4 Score=40.99 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=42.4
Q ss_pred HHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 37 KSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 37 ~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+..-+..|++.|... +++|..|||+.+++ ++..+.++++.|...|++.+.
T Consensus 14 r~~n~~~il~~l~~~--------~~~sr~~la~~~~l----s~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 14 KQTNAGAVYRLIDQL--------GPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHHHHHHSS--------CSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred HHhHHHHHHHHHHHc--------CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEee
Confidence 334445578888776 48999999999999 999999999999999999873
No 484
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=78.49 E-value=5.4 Score=36.22 Aligned_cols=93 Identities=11% Similarity=0.026 Sum_probs=58.1
Q ss_pred CCCCCeEEEEcCcc-cHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEecc------CCCC----CCCC-CEEEe
Q 017495 205 FDGLKVLVDVGGGI-GVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGD------MFEN----VPRG-DAIFL 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D------~~~~----~p~~-D~i~~ 271 (370)
..+..+||-+|+|. |.++.++++...-.+++++|. +.-.+.+++..--.++..+ ..+. .+.+ |+|+-
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid 248 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 248 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEE
Confidence 66778999999884 888899998874338888885 5555544433211222211 1110 1123 88775
Q ss_pred cccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 272 KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.-- . ...++.+.+.|+|||+++++-.
T Consensus 249 ~~g-----~---~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 249 CTG-----A---EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp CSC-----C---HHHHHHHHHHSCTTCEEEECSC
T ss_pred CCC-----C---hHHHHHHHHHhcCCCEEEEEec
Confidence 322 1 2457788899999999998754
No 485
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*
Probab=78.45 E-value=8.8 Score=33.78 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=50.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCC----CeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCCCCCEEEecccccCCChh
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPC----IKGISFDL-PHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDE 281 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~ 281 (370)
+...|+=||||.|..+..|.+.+|+ ++.+++|. |.... ... ..++.+....+ ++
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~~~~-l~~----------------~~NV~li~~fv----de 118 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHHDPI-LNG----------------LRDVTLVTRFV----DE 118 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCCCGG-GTT----------------CTTEEEEECCC----CH
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcchhh-hcC----------------CCcEEEEeccC----CH
Confidence 3569999999999999999988775 57788885 22110 000 11444444432 23
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 282 HCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 282 ~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
.-++..++.+.....|+|.|.....
T Consensus 119 ---~dl~~l~~~~~~~~iLLISDIRS~r 143 (307)
T 3mag_A 119 ---EYLRSIKKQLHPSKIILISDVRSKR 143 (307)
T ss_dssp ---HHHHHHHHHHTTSCEEEEECCCC--
T ss_pred ---HHHHHHHHhccCCCEEEEEEecCCC
Confidence 2256666777778899998876653
No 486
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=78.10 E-value=1.3 Score=34.38 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=39.1
Q ss_pred HhcChHHHHhh-cccccCCCCCCCCHHHHHHHCC----CCCCCCcchHHHHHHHHhcCCceecc
Q 017495 40 IELNVIDIISA-ASAAEDGHGELLSASKIAARLP----TKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 40 ~~lglfd~L~~-~~~~~~~~~~~~t~~ela~~~~----~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.+..|+..|.. . +++|..+|++.++ + ++.-+.++|+-|+..|+|...
T Consensus 10 ~e~~vL~~L~~~~--------~~~t~~el~~~l~~~~~~----~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 10 LERAVMDHLWSRT--------EPQTVRQVHEALSARRDL----AYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHTCS--------SCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcC--------CCCCHHHHHHHHhccCCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 45566777765 3 3899999999997 6 889999999999999999964
No 487
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=77.73 E-value=1.8 Score=36.24 Aligned_cols=63 Identities=16% Similarity=0.087 Sum_probs=47.3
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHC--------CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecc
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARL--------PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAA 114 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~ 114 (370)
-|+..|..+ |.+--||++.+ ++ ++..+...|+-|...|+|+........|+....|++|
T Consensus 40 ~IL~lL~~~---------p~~GYeL~~~l~~~~~~~~~~----s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT 106 (204)
T 3l9f_A 40 IILGILSKK---------ERSGYEINDILQNQLSYFYDG----TYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAIT 106 (204)
T ss_dssp HHHHHTSSC---------CEEHHHHHHHHHHTSTTTEEC----CTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEEC
T ss_pred HHHHHHHcC---------CCCHHHHHHHHHHHhCCccCC----CcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEC
Confidence 566677765 89999999887 46 8889999999999999998642211122234579999
Q ss_pred hhhh
Q 017495 115 PICK 118 (370)
Q Consensus 115 ~~~~ 118 (370)
+.++
T Consensus 107 ~~Gr 110 (204)
T 3l9f_A 107 ESGK 110 (204)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 9986
No 488
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=77.44 E-value=1.6 Score=26.44 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=24.2
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCC
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYD 93 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g 93 (370)
+.|..+||+.+|+ +..-+.+|++.....|
T Consensus 21 g~s~~~IA~~lgi----s~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 21 NVSLHEMSRKISR----SRHCIRVYLKDPVSYG 49 (51)
T ss_dssp TCCHHHHHHHHTC----CHHHHHHHHHCSTTTT
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHhhHHhcC
Confidence 4899999999999 9999999998654443
No 489
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=77.23 E-value=1.1 Score=35.57 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=40.5
Q ss_pred HHHhcChHHHHhhcccccCCCC-CCCCHHHHHHHC-----CCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 38 SAIELNVIDIISAASAAEDGHG-ELLSASKIAARL-----PTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~-~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+-.+.-|++.|... + .+.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+.
T Consensus 16 T~qR~~Il~~L~~~-------~~~h~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 71 (150)
T 2w57_A 16 TLPRLKILEVLQQP-------ECQHISAEELYKKLIDLGEEI----GLATVYRVLNQFDDAGIVTRH 71 (150)
T ss_dssp CHHHHHHHHHHTSG-------GGSSEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhC-------CCCCCCHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHCCcEEEE
Confidence 34556688888653 1 389999999988 56 888999999999999999964
No 490
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=77.21 E-value=1.8 Score=34.25 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=44.4
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHC-------CCCCCCCcchHHHHHHHHhcCCceeccccCC-CCCccccceecch
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARL-------PTKNPDAPFLLDRMLSLLASYDILRCSLQNG-DNGQVERVYGAAP 115 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~-------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~-~~g~~~~~y~~~~ 115 (370)
|+..|..+ |.+--+|.+.+ ++ ++..+...|+-|...|+|+....+. ..|+....|++|+
T Consensus 49 IL~lL~~~---------p~~GYeI~k~l~~~~~~~~i----s~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~ 115 (148)
T 2zfw_A 49 VLAVLRHE---------DSYGTELIQHLETHWPNYRL----SDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQ 115 (148)
T ss_dssp HHHHHTTC---------CEEHHHHHHHHHHHCTTEEC----CSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESS
T ss_pred HHHHHHhC---------CCcHHHHHHHHHHHcCCCCC----ChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECH
Confidence 55666665 77777777665 47 8899999999999999998642111 1133345688888
Q ss_pred hhhh
Q 017495 116 ICKF 119 (370)
Q Consensus 116 ~~~~ 119 (370)
.++.
T Consensus 116 ~Gr~ 119 (148)
T 2zfw_A 116 ANDD 119 (148)
T ss_dssp SSCS
T ss_pred HHHH
Confidence 7763
No 491
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=77.00 E-value=10 Score=32.88 Aligned_cols=88 Identities=16% Similarity=0.102 Sum_probs=49.5
Q ss_pred eEEEEcCcc-cHH-HHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCC-CCCEEEecccccCCChhHHHH
Q 017495 210 VLVDVGGGI-GVT-LGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVP-RGDAIFLKWMLHGWTDEHCLK 285 (370)
Q Consensus 210 ~vLDvG~G~-G~~-~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p-~~D~i~~~~vLh~~~d~~~~~ 285 (370)
+|.=||+|. |.. +..+.+.....+++++|. ++..+.+.+..-......|..+... ..|+|++. .+......
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVila-----vp~~~~~~ 77 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFRE 77 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEc-----CCHHHHHH
Confidence 677788873 333 333443222237888887 5555444322111111223222233 45998875 45556678
Q ss_pred HHHHHHHhCCCCcEEEE
Q 017495 286 LLKNCWEALPENGKVII 302 (370)
Q Consensus 286 iL~~~~~~L~pgG~lli 302 (370)
+++.+...++|+..++.
T Consensus 78 v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 78 IAKKLSYILSEDATVTD 94 (281)
T ss_dssp HHHHHHHHSCTTCEEEE
T ss_pred HHHHHHhhCCCCcEEEE
Confidence 88899899999875554
No 492
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=76.88 E-value=1.1 Score=33.83 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=38.9
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.+..|+..|... +|+|..+||+.++...+.++.-+.++|+-|+..|+|...
T Consensus 11 ~q~~vL~~L~~~--------~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 11 AEWDVMNIIWDK--------KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHHS--------SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhc--------CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 345566677665 389999999999631011788999999999999999964
No 493
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=76.44 E-value=6.7 Score=36.25 Aligned_cols=99 Identities=15% Similarity=0.032 Sum_probs=61.7
Q ss_pred CCCCCeEEEEcCcc-cHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CC---------CC-C-CEEE
Q 017495 205 FDGLKVLVDVGGGI-GVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NV---------PR-G-DAIF 270 (370)
Q Consensus 205 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~---------p~-~-D~i~ 270 (370)
..+..+||-+|+|. |.++.++++...-.+++++|. ++-.+.+++.. .+++ |..+ +. +. + |+|+
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-a~~i--~~~~~~~~~~~~~~~~~g~g~Dvvi 259 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG-FETI--DLRNSAPLRDQIDQILGKPEVDCGV 259 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTT-CEEE--ETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CcEE--cCCCcchHHHHHHHHhCCCCCCEEE
Confidence 66788999999885 889999998864338888986 66666665442 2333 2222 11 11 3 8877
Q ss_pred ecccccCCC--h----hHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 271 LKWMLHGWT--D----EHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 271 ~~~vLh~~~--d----~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
-.---.... + ......++.+.+.|+|||+++++-..
T Consensus 260 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~ 301 (398)
T 2dph_A 260 DAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY 301 (398)
T ss_dssp ECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred ECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence 543221000 0 00123578889999999999886654
No 494
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=76.19 E-value=1.9 Score=32.72 Aligned_cols=34 Identities=15% Similarity=0.015 Sum_probs=31.4
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
|.++.+||+.+++ ++..++.||+.|+..|.+...
T Consensus 20 p~~~~~la~~~~~----~~~~~~~~l~~l~~~G~l~~i 53 (121)
T 2pjp_A 20 PWWVRDLAKETGT----DEQAMRLTLRQAAQQGIITAI 53 (121)
T ss_dssp CEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 6799999999999 999999999999999988863
No 495
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=76.18 E-value=2.1 Score=40.19 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=43.9
Q ss_pred HHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 36 LKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 36 l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
++..-+..|++.|... +++|..|||+.+++ ++..+.++++.|...|++.+.
T Consensus 36 ~r~~n~~~il~~l~~~--------~~~sr~ela~~~gl----s~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 36 IKQINAGRVYKLIDQK--------GPISRIDLSKESEL----APASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHHHHH--------CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHc--------CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec
Confidence 4555556688888776 48999999999999 999999999999999999863
No 496
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=76.06 E-value=9 Score=35.23 Aligned_cols=95 Identities=17% Similarity=0.165 Sum_probs=59.7
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCe-EEEeeh-hhHHHhCCC-CCCCeEEeccCCCC----C------C-CCCEEEeccc
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIK-GISFDL-PHVLANAPS-FPGVEHVGGDMFEN----V------P-RGDAIFLKWM 274 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~~~~a~~-~~rv~~~~~D~~~~----~------p-~~D~i~~~~v 274 (370)
.+++|+-||.|.++..+..+. .+ +..+|. +..++..+. .....++.+|+.+- . + ..|+|+..-=
T Consensus 3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 489999999999999998864 44 456776 655554432 24577888888762 1 1 2388887544
Q ss_pred ccCCC--------hhHHHHH---HHHHHHhCCCCcEEEEEeecCC
Q 017495 275 LHGWT--------DEHCLKL---LKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 275 Lh~~~--------d~~~~~i---L~~~~~~L~pgG~lli~e~~~~ 308 (370)
...++ |+ ...+ +-++.+.++| +++++|.+..
T Consensus 81 CQ~fS~ag~~~~~d~-r~~L~~~~~~~v~~~~P--~~~v~ENV~g 122 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDS-RNQLYMHFYRLVSELQP--LFFLAENVPG 122 (376)
T ss_dssp CCTTC-------CHH-HHHHHHHHHHHHHHHCC--SEEEEEECTT
T ss_pred CCCcccccCCCCCCc-hHHHHHHHHHHHHHhCC--CEEEEecchH
Confidence 33333 22 1222 2234455678 6778888753
No 497
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=75.58 E-value=1.9 Score=43.34 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=24.4
Q ss_pred CCCeEEEEcCcccHHHHHHHhhC-------CC-----CeEEEeeh
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRY-------PC-----IKGISFDL 239 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~-------p~-----~~~~~~D~ 239 (370)
+.-+|+|+|-|+|.......+.+ |. ++++.++.
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~ 102 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEK 102 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeC
Confidence 45699999999998888776643 22 56777774
No 498
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=74.61 E-value=2.5 Score=37.96 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=31.3
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCcee
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILR 96 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 96 (370)
++|..|||+++++ ++.-++|.|..|...|+|+
T Consensus 21 ~~~~~ela~~l~v----S~~tIrRdL~~l~~~G~v~ 52 (315)
T 2w48_A 21 DMTQAQIARELGI----YRTTISRLLKRGREQGIVT 52 (315)
T ss_dssp CCCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEE
Confidence 7999999999999 9999999999999999997
No 499
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=74.57 E-value=3.9 Score=34.95 Aligned_cols=43 Identities=9% Similarity=0.080 Sum_probs=38.0
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.-|+-.|..+ +.|.++||+.+|+ ++.-++..|+-|+..|+++.
T Consensus 168 ~~l~~~l~~~---------~~t~~~la~~~~l----~~~~V~~~l~~L~~~~~v~~ 210 (232)
T 2qlz_A 168 AILHYLLLNG---------RATVEELSDRLNL----KEREVREKISEMARFVPVKI 210 (232)
T ss_dssp HHHHHHHHSS---------EEEHHHHHHHHTC----CHHHHHHHHHHHTTTSCEEE
T ss_pred HHHHHHHhcC---------CCCHHHHHHHhCc----CHHHHHHHHHHHHhcCCeEE
Confidence 4556667765 8999999999999 99999999999999999974
No 500
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=74.38 E-value=1.9 Score=33.00 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=32.3
Q ss_pred CCC-CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 60 ELL-SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 60 ~~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
..+ |..+||+.+|+ +..-+++-|+.|...|+|...
T Consensus 33 ~~lPse~~La~~~~v----Sr~tvr~Al~~L~~~Gli~~~ 68 (126)
T 3by6_A 33 DQLPSVRETALQEKI----NPNTVAKAYKELEAQKVIRTI 68 (126)
T ss_dssp CEECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 467 99999999999 999999999999999999863
Done!