BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017496
(370 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O2Z|A Chain A, Crystal Structure Of A Protein Member Of The Upf0052
Family (Bh3568) From Bacillus Halodurans At 2.60 A
Resolution
pdb|2O2Z|B Chain B, Crystal Structure Of A Protein Member Of The Upf0052
Family (Bh3568) From Bacillus Halodurans At 2.60 A
Resolution
pdb|2O2Z|C Chain C, Crystal Structure Of A Protein Member Of The Upf0052
Family (Bh3568) From Bacillus Halodurans At 2.60 A
Resolution
pdb|2O2Z|D Chain D, Crystal Structure Of A Protein Member Of The Upf0052
Family (Bh3568) From Bacillus Halodurans At 2.60 A
Resolution
Length = 323
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 110/280 (39%), Gaps = 83/280 (29%)
Query: 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCL 118
+ +++VF GGT + ++ LK + ++ V+DDGGS+ + + L P GD+R+ +
Sbjct: 4 KKNVIVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLV 63
Query: 119 RLSDESTPEALAVXXXXXXXXXXXXQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSY 178
LS+ +P E + F
Sbjct: 64 ALSE------------------------------------------VEPLLEQL--FQHR 79
Query: 179 FQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVIST 238
F+N S S+GN AG I S+V ++ +VLP ++
Sbjct: 80 FEN--------GNGLSGHSLGNLLLAGXTSITGDFARGISEXSKVLNV--RGKVLP--AS 127
Query: 239 NDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNL 298
N + L E DGT++ G+ S++P +IKRVF ++ + +
Sbjct: 128 NRSIILHGEXEDGTIVTGE------------------SSIPKAGKKIKRVF-LTPKDTKP 168
Query: 299 LHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSP 338
L E L+ + D I+ GSL+TS+ P+L+ P
Sbjct: 169 LRE--------GLEAIRKADVIVIGPGSLYTSVLPNLLVP 200
>pdb|2HZB|A Chain A, X-Ray Crystal Structure Of Protein Bh3568 From Bacillus
Halodurans. Northeast Structural Genomics Consortium
Bhr60.
pdb|2HZB|B Chain B, X-Ray Crystal Structure Of Protein Bh3568 From Bacillus
Halodurans. Northeast Structural Genomics Consortium
Bhr60.
pdb|2HZB|C Chain C, X-Ray Crystal Structure Of Protein Bh3568 From Bacillus
Halodurans. Northeast Structural Genomics Consortium
Bhr60.
pdb|2HZB|D Chain D, X-Ray Crystal Structure Of Protein Bh3568 From Bacillus
Halodurans. Northeast Structural Genomics Consortium
Bhr60
Length = 333
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 110/280 (39%), Gaps = 83/280 (29%)
Query: 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCL 118
+ +++VF GGT + ++ LK + ++ V+DDGGS+ + + L P GD+R+ +
Sbjct: 3 KKNVVVFGGGTGLSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRNVLV 62
Query: 119 RLSDESTPEALAVXXXXXXXXXXXXQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSY 178
LS+ +P E + F
Sbjct: 63 ALSE------------------------------------------VEPLLEQL--FQHR 78
Query: 179 FQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVIST 238
F+N S S+GN AG I S+V ++ +VLP ++
Sbjct: 79 FEN--------GNGLSGHSLGNLLLAGXTSITGDFARGISEXSKVLNV--RGKVLP--AS 126
Query: 239 NDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNL 298
N + L E DGT++ G+ S++P +IKRVF ++ + +
Sbjct: 127 NRSIILHGEXEDGTIVTGE------------------SSIPKAGKKIKRVF-LTPKDTKP 167
Query: 299 LHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSP 338
L E L+ + D I+ GSL+TS+ P+L+ P
Sbjct: 168 LRE--------GLEAIRKADVIVIGPGSLYTSVLPNLLVP 199
>pdb|2P0Y|A Chain A, Crystal Structure Of Q88yi3_lacpl From Lactobacillus
Plantarum. Northeast Structural Genomics Consortium
Target Lpr6
Length = 341
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 104/277 (37%), Gaps = 79/277 (28%)
Query: 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCL 118
+P ++V GGT V+ L+ + V+ V+DDGGS+ I + GDIR+ +
Sbjct: 10 RPKIVVIGGGTGLPVVLNGLRKQAVDITAVVTVADDGGSSGIIRNYVNVVPPGDIRNVXV 69
Query: 119 RLSDESTPEALAVXXXXXXXXXXXXQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSY 178
LS S P+ L+K + F
Sbjct: 70 ALS--SWPD--------------------------------LYKDI----------FQYR 85
Query: 179 FQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVIST 238
FQ + + F F+ +IGN A + A+ S + + V P +
Sbjct: 86 FQGD------DQF-FAGHAIGNLIIAALTEXKSGVFDAVQELSNXXQV--DGHVYP--AA 134
Query: 239 NDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNL 298
N+ LTL + DGT + G+ EI+ A ++RV+ G
Sbjct: 135 NEALTLHGKFSDGTELVGEAEIT------------------AAHKSLERVWVTDKNGKE- 175
Query: 299 LHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSL 335
P A V+D + A D I+ GSLFTSI P+L
Sbjct: 176 -----PQAVQPVIDAIXAADQIVLGPGSLFTSILPNL 207
>pdb|2PPV|A Chain A, Crystal Structure Of A Protein Belonging To The Upf0052
(Se_0549) From Staphylococcus Epidermidis Atcc 12228 At
2.00 A Resolution
Length = 332
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCL 118
Q ++++ GGT + + L+ + ++ V+D+GGST +I V PA GDIR+
Sbjct: 4 QXNVVLIGGGTGLSVLARGLREFPIDITAIVTVADNGGSTGKIRDVXDIPAPGDIRNVIA 63
Query: 119 RLSD 122
LSD
Sbjct: 64 ALSD 67
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 31/139 (22%)
Query: 197 SIGNFFFAGARVFFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRG 256
S+GN AG AI S+V +I + QV+P STN + L DG ++ G
Sbjct: 89 SLGNLVIAGXTNITNDFGHAIKELSKVLNI--KGQVIP--STNASVQLNAVXEDGEIVHG 144
Query: 257 QNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHEVFPTANSAVLDQLNA 316
+ I P +I RVF S+ V P N A+ + L
Sbjct: 145 ETNI------------------PKTHKKIDRVFLEPSD-------VEP-XNEAI-EALEQ 177
Query: 317 VDCIIYAMGSLFTSICPSL 335
D I+ GSL+TS+ +L
Sbjct: 178 ADLIVLGPGSLYTSVISNL 196
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 268 MEPVKKERSAVPALPSR--------IKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDC 319
+P K+E ++P + R +++ Y S +GS+ HE ANS DQL+
Sbjct: 589 QDPTKEELXSIPYIGFRGDFGNLSALEKPIYDSKDGSSYYHE----ANSDAKDQLDGDGL 644
Query: 320 IIYAMGSLFTSIC 332
YA+ + FT++
Sbjct: 645 QFYALKNNFTALT 657
>pdb|2Q7X|A Chain A, Crystal Structure Of A Putative Phospho Transferase
(Sp_1565) From Streptococcus Pneumoniae Tigr4 At 2.00 A
Resolution
pdb|2Q7X|B Chain B, Crystal Structure Of A Putative Phospho Transferase
(Sp_1565) From Streptococcus Pneumoniae Tigr4 At 2.00 A
Resolution
Length = 326
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEI---VRVLGGPAVGDIRSR 116
P + V GGT ++ L+ +A ++ V+DDGGS+ E+ + L P GD+R+
Sbjct: 5 PXITVIGGGTGSPVILXSLREXDVEIAAIVTVADDGGSSGELRXNXQQLTPP--GDLRNV 62
Query: 117 CLRLSD 122
+ SD
Sbjct: 63 LVAXSD 68
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 296 SNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLV 336
+N L++ P A+ V+ + D I+ GSLFTSI P++V
Sbjct: 164 TNALNDDTPLASRRVVQTILESDXIVLGPGSLFTSILPNIV 204
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 12/73 (16%)
Query: 268 MEPVKKERSAVPALPSR--------IKRVFYMSSEGSNLLHEVFPTANSAVLDQLNAVDC 319
+P K+E ++P + R +++ Y S +GS+ HE ANS DQL+
Sbjct: 598 QDPKKEELMSIPYIGFRGDFGNLSALEKPIYDSKDGSSYYHE----ANSDAKDQLDGDGL 653
Query: 320 IIYAMGSLFTSIC 332
YA+ + FT++
Sbjct: 654 QFYALKNNFTALT 666
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,715,092
Number of Sequences: 62578
Number of extensions: 359051
Number of successful extensions: 742
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 729
Number of HSP's gapped (non-prelim): 14
length of query: 370
length of database: 14,973,337
effective HSP length: 100
effective length of query: 270
effective length of database: 8,715,537
effective search space: 2353194990
effective search space used: 2353194990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)