Query 017496
Match_columns 370
No_of_seqs 166 out of 772
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 09:04:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07187 YvcK_like family of mo 100.0 2.3E-64 4.9E-69 493.0 24.6 216 62-367 1-217 (308)
2 TIGR01826 CofD_related conserv 100.0 4.4E-64 9.5E-69 490.7 24.2 214 62-367 1-214 (310)
3 cd07044 CofD_YvcK Family of Co 100.0 7E-63 1.5E-67 482.6 24.2 216 62-367 1-216 (309)
4 PF01933 UPF0052: Uncharacteri 100.0 6.6E-62 1.4E-66 474.4 19.4 219 62-367 1-225 (300)
5 COG0391 Uncharacterized conser 100.0 1.7E-57 3.6E-62 445.3 21.4 223 58-367 6-231 (323)
6 cd07186 CofD_like LPPG:FO 2-ph 100.0 2.4E-56 5.1E-61 434.2 21.9 214 62-367 1-225 (303)
7 TIGR01819 F420_cofD LPPG:FO 2- 100.0 1.4E-55 3E-60 427.2 21.0 211 63-367 1-222 (297)
8 PRK13606 LPPG:FO 2-phospho-L-l 100.0 6.6E-55 1.4E-59 423.8 22.8 214 60-367 1-225 (303)
9 PRK06719 precorrin-2 dehydroge 59.2 11 0.00023 33.8 3.5 31 58-88 12-42 (157)
10 PTZ00318 NADH dehydrogenase-li 58.3 11 0.00023 38.6 3.7 31 58-88 9-39 (424)
11 PTZ00058 glutathione reductase 55.2 12 0.00026 40.4 3.6 51 38-88 27-77 (561)
12 PF13241 NAD_binding_7: Putati 47.3 15 0.00033 30.2 2.3 35 58-92 6-40 (103)
13 TIGR01470 cysG_Nterm siroheme 45.7 22 0.00048 33.2 3.4 33 58-90 8-40 (205)
14 PRK06718 precorrin-2 dehydroge 45.2 24 0.00052 32.8 3.5 32 58-89 9-40 (202)
15 PF00070 Pyr_redox: Pyridine n 45.0 24 0.00053 27.2 3.0 33 61-94 1-33 (80)
16 COG1252 Ndh NADH dehydrogenase 44.0 24 0.00052 36.8 3.6 62 58-120 2-66 (405)
17 PRK05562 precorrin-2 dehydroge 42.7 27 0.00059 33.4 3.5 36 58-93 24-59 (223)
18 PF01408 GFO_IDH_MocA: Oxidore 42.3 43 0.00093 27.2 4.3 58 60-118 1-59 (120)
19 PF00551 Formyl_trans_N: Formy 41.8 36 0.00077 30.8 4.0 36 60-95 1-40 (181)
20 PRK13512 coenzyme A disulfide 41.6 25 0.00053 36.1 3.3 29 60-88 2-32 (438)
21 PF08030 NAD_binding_6: Ferric 41.5 18 0.00038 31.1 1.9 21 61-81 3-23 (156)
22 PRK07364 2-octaprenyl-6-methox 41.4 34 0.00073 34.1 4.2 31 59-89 18-48 (415)
23 cd06183 cyt_b5_reduct_like Cyt 41.2 39 0.00085 30.8 4.3 33 60-92 105-143 (234)
24 cd00322 FNR_like Ferredoxin re 41.0 44 0.00095 30.0 4.5 25 57-81 95-119 (223)
25 cd06187 O2ase_reductase_like T 40.7 39 0.00085 30.7 4.2 35 59-93 98-137 (224)
26 PF07992 Pyr_redox_2: Pyridine 40.0 26 0.00056 30.8 2.8 28 61-88 1-28 (201)
27 cd06191 FNR_iron_sulfur_bindin 39.3 51 0.0011 30.3 4.7 36 58-93 101-141 (231)
28 PLN02927 antheraxanthin epoxid 38.5 41 0.0009 37.3 4.6 32 58-89 80-111 (668)
29 TIGR00215 lpxB lipid-A-disacch 38.1 37 0.0008 34.4 3.9 31 59-89 5-39 (385)
30 PRK06567 putative bifunctional 38.1 55 0.0012 38.1 5.6 34 59-93 893-926 (1028)
31 cd06216 FNR_iron_sulfur_bindin 38.0 53 0.0012 30.5 4.7 35 59-93 122-161 (243)
32 PRK11749 dihydropyrimidine deh 37.5 38 0.00082 34.9 3.9 36 53-88 134-169 (457)
33 PRK06753 hypothetical protein; 37.4 34 0.00074 33.6 3.4 29 60-88 1-29 (373)
34 cd06193 siderophore_interactin 37.3 67 0.0015 29.9 5.3 37 58-94 119-157 (235)
35 cd06194 FNR_N-term_Iron_sulfur 36.6 37 0.00081 30.9 3.4 25 57-81 95-119 (222)
36 PRK07236 hypothetical protein; 36.6 39 0.00085 33.6 3.8 32 58-89 5-36 (386)
37 PF04820 Trp_halogenase: Trypt 35.5 26 0.00057 36.5 2.4 52 212-263 155-207 (454)
38 PRK12770 putative glutamate sy 35.2 51 0.0011 32.6 4.3 36 54-89 13-48 (352)
39 PRK09564 coenzyme A disulfide 34.6 37 0.0008 34.4 3.3 29 60-88 1-31 (444)
40 PRK06847 hypothetical protein; 34.4 45 0.00098 32.7 3.8 30 59-88 4-33 (375)
41 cd06200 SiR_like1 Cytochrome p 34.3 45 0.00097 31.5 3.6 30 51-81 102-131 (245)
42 cd06182 CYPOR_like NADPH cytoc 34.2 46 0.001 32.0 3.7 31 51-81 107-137 (267)
43 PRK08163 salicylate hydroxylas 34.0 44 0.00095 33.1 3.6 30 59-88 4-33 (396)
44 PRK07538 hypothetical protein; 33.6 40 0.00088 33.9 3.4 29 60-88 1-29 (413)
45 PRK08051 fre FMN reductase; Va 33.3 36 0.00078 31.6 2.7 24 58-81 101-124 (232)
46 PTZ00494 tuzin-like protein; P 32.6 82 0.0018 34.1 5.4 61 53-115 388-455 (664)
47 PF01494 FAD_binding_3: FAD bi 32.5 38 0.00082 32.0 2.8 33 61-93 3-35 (356)
48 cd06211 phenol_2-monooxygenase 32.4 42 0.0009 31.2 3.0 34 58-91 108-146 (238)
49 cd06192 DHOD_e_trans_like FAD/ 32.3 55 0.0012 30.5 3.8 35 59-93 97-134 (243)
50 TIGR01373 soxB sarcosine oxida 32.3 65 0.0014 32.2 4.6 49 58-106 29-83 (407)
51 PRK09754 phenylpropionate diox 32.1 43 0.00093 33.7 3.2 27 58-84 2-28 (396)
52 PRK07588 hypothetical protein; 31.6 46 0.001 33.1 3.3 30 60-89 1-30 (391)
53 COG0543 UbiB 2-polyprenylpheno 31.5 61 0.0013 31.0 4.0 22 61-82 109-130 (252)
54 PRK04965 NADH:flavorubredoxin 31.1 53 0.0011 32.7 3.7 35 60-94 3-37 (377)
55 cd06214 PA_degradation_oxidore 31.1 47 0.001 30.6 3.1 24 58-81 107-130 (241)
56 TIGR01133 murG undecaprenyldip 30.9 58 0.0013 31.2 3.8 29 60-88 1-34 (348)
57 cd06195 FNR1 Ferredoxin-NADP+ 30.8 77 0.0017 29.4 4.5 24 58-81 100-123 (241)
58 TIGR03219 salicylate_mono sali 30.7 50 0.0011 33.2 3.4 30 60-89 1-31 (414)
59 COG1648 CysG Siroheme synthase 30.5 53 0.0011 31.1 3.4 34 58-91 11-44 (210)
60 TIGR01316 gltA glutamate synth 30.2 75 0.0016 32.8 4.7 35 55-89 129-163 (449)
61 cd06189 flavin_oxioreductase N 30.2 47 0.001 30.4 2.9 23 59-81 98-120 (224)
62 PRK12810 gltD glutamate syntha 30.1 61 0.0013 33.7 4.1 34 55-88 139-172 (471)
63 cd06186 NOX_Duox_like_FAD_NADP 30.1 49 0.0011 29.8 3.0 24 58-81 105-128 (210)
64 PRK05802 hypothetical protein; 30.0 70 0.0015 31.9 4.3 34 58-91 171-207 (320)
65 cd06198 FNR_like_3 NAD(P) bind 29.9 82 0.0018 28.6 4.4 35 59-93 95-134 (216)
66 PF14737 DUF4470: Domain of un 29.7 28 0.0006 28.7 1.2 18 108-125 30-47 (100)
67 cd06217 FNR_iron_sulfur_bindin 29.6 82 0.0018 28.8 4.4 36 58-93 106-146 (235)
68 PRK06912 acoL dihydrolipoamide 28.9 54 0.0012 33.8 3.4 36 60-96 1-36 (458)
69 cd06208 CYPOR_like_FNR These f 28.8 63 0.0014 31.2 3.6 24 58-81 134-157 (286)
70 PRK01581 speE spermidine synth 28.6 56 0.0012 33.8 3.4 19 60-79 152-170 (374)
71 TIGR03224 benzo_boxA benzoyl-C 28.6 58 0.0013 33.6 3.5 31 51-81 259-289 (411)
72 PRK12831 putative oxidoreducta 28.5 74 0.0016 33.2 4.4 35 54-88 135-169 (464)
73 cd06218 DHOD_e_trans FAD/NAD b 28.4 1.1E+02 0.0023 28.9 5.0 35 58-92 97-134 (246)
74 COG0528 PyrH Uridylate kinase 28.4 30 0.00064 33.7 1.3 34 59-92 124-161 (238)
75 cd06190 T4MO_e_transfer_like T 28.2 52 0.0011 30.2 2.9 23 59-81 97-119 (232)
76 PLN03116 ferredoxin--NADP+ red 28.2 56 0.0012 32.1 3.2 24 58-81 155-178 (307)
77 PRK13289 bifunctional nitric o 28.1 93 0.002 31.3 4.9 24 58-81 260-283 (399)
78 PRK00054 dihydroorotate dehydr 28.0 1.1E+02 0.0024 28.7 5.1 34 58-91 101-137 (250)
79 PF03807 F420_oxidored: NADP o 27.8 70 0.0015 25.1 3.2 52 61-114 1-56 (96)
80 PLN02712 arogenate dehydrogena 27.7 90 0.0019 34.5 5.0 30 58-87 51-80 (667)
81 PF03575 Peptidase_S51: Peptid 27.2 46 0.00099 29.2 2.2 24 306-329 25-48 (154)
82 cd06212 monooxygenase_like The 27.0 58 0.0013 29.9 2.9 23 59-81 103-125 (232)
83 PRK08345 cytochrome-c3 hydroge 26.9 1.3E+02 0.0028 29.2 5.5 21 59-79 108-128 (289)
84 PRK05868 hypothetical protein; 26.7 65 0.0014 32.2 3.4 30 60-89 2-31 (372)
85 TIGR02911 sulfite_red_B sulfit 26.1 72 0.0016 30.5 3.5 40 55-94 95-140 (261)
86 cd06199 SiR Cytochrome p450- l 26.0 80 0.0017 31.8 3.9 31 51-81 205-235 (360)
87 PRK07634 pyrroline-5-carboxyla 25.9 1.2E+02 0.0026 28.1 4.8 57 59-115 4-62 (245)
88 PRK13609 diacylglycerol glucos 25.7 96 0.0021 30.6 4.4 38 58-95 3-46 (380)
89 cd06215 FNR_iron_sulfur_bindin 25.6 55 0.0012 29.9 2.5 23 59-81 103-125 (231)
90 cd06210 MMO_FAD_NAD_binding Me 25.2 59 0.0013 29.9 2.6 23 59-81 108-130 (236)
91 PRK06696 uridine kinase; Valid 25.2 1.7E+02 0.0037 27.1 5.8 50 58-107 20-73 (223)
92 cd06197 FNR_like_2 FAD/NAD(P) 25.2 60 0.0013 30.1 2.7 24 58-81 124-147 (220)
93 TIGR01292 TRX_reduct thioredox 25.1 72 0.0016 29.8 3.3 28 61-88 2-29 (300)
94 PF12646 DUF3783: Domain of un 24.7 2.3E+02 0.005 21.2 5.3 46 60-105 1-50 (58)
95 PRK08221 anaerobic sulfite red 24.7 78 0.0017 30.3 3.4 25 57-81 99-123 (263)
96 PRK12814 putative NADPH-depend 24.6 1.3E+02 0.0028 32.9 5.5 34 55-88 189-222 (652)
97 cd06184 flavohem_like_fad_nad_ 24.2 71 0.0015 29.7 3.0 24 58-81 112-135 (247)
98 PRK12778 putative bifunctional 24.2 94 0.002 34.5 4.4 35 55-89 427-461 (752)
99 PRK07609 CDP-6-deoxy-delta-3,4 24.1 67 0.0015 31.6 3.0 24 58-81 203-226 (339)
100 TIGR03169 Nterm_to_SelD pyridi 24.0 61 0.0013 31.9 2.6 21 61-81 1-21 (364)
101 COG3961 Pyruvate decarboxylase 23.9 1.4E+02 0.003 32.5 5.3 22 212-235 224-245 (557)
102 cd06221 sulfite_reductase_like 23.8 82 0.0018 29.8 3.4 24 58-81 97-120 (253)
103 cd06185 PDR_like Phthalate dio 23.7 87 0.0019 28.2 3.4 34 59-92 98-134 (211)
104 cd06201 SiR_like2 Cytochrome p 23.1 85 0.0018 30.5 3.4 25 57-81 153-177 (289)
105 PRK00726 murG undecaprenyldiph 22.9 86 0.0019 30.5 3.4 30 60-89 2-36 (357)
106 TIGR02113 coaC_strep phosphopa 22.8 76 0.0017 29.1 2.8 29 62-90 4-35 (177)
107 PRK10684 HCP oxidoreductase, N 22.7 77 0.0017 31.3 3.1 34 58-91 110-148 (332)
108 PRK10637 cysG siroheme synthas 22.7 83 0.0018 32.9 3.4 68 58-125 11-82 (457)
109 PLN00093 geranylgeranyl diphos 22.7 1E+02 0.0022 32.2 4.0 31 58-88 38-68 (450)
110 cd06196 FNR_like_1 Ferredoxin 22.6 59 0.0013 29.5 2.1 22 60-81 100-121 (218)
111 PRK10926 ferredoxin-NADP reduc 22.5 1.1E+02 0.0023 29.0 3.8 32 60-91 107-143 (248)
112 PF01564 Spermine_synth: Sperm 22.5 90 0.0019 29.9 3.4 23 58-82 76-98 (246)
113 PRK06475 salicylate hydroxylas 22.2 83 0.0018 31.5 3.2 30 60-89 3-32 (400)
114 cd03145 GAT1_cyanophycinase Ty 22.1 77 0.0017 29.7 2.8 23 306-328 73-95 (217)
115 cd06213 oxygenase_e_transfer_s 22.1 78 0.0017 29.1 2.8 23 59-81 100-122 (227)
116 COG0665 DadA Glycine/D-amino a 21.9 1.1E+02 0.0024 29.8 4.0 32 58-89 3-34 (387)
117 cd06206 bifunctional_CYPOR The 21.9 1.1E+02 0.0023 31.1 3.9 29 52-80 223-251 (384)
118 TIGR02360 pbenz_hydroxyl 4-hyd 21.8 95 0.0021 31.2 3.6 33 59-91 2-34 (390)
119 cd06188 NADH_quinone_reductase 21.8 86 0.0019 30.1 3.1 24 58-81 149-172 (283)
120 TIGR03609 S_layer_CsaB polysac 21.8 74 0.0016 30.5 2.7 24 308-331 56-79 (298)
121 cd06204 CYPOR NADPH cytochrome 21.8 1E+02 0.0022 31.8 3.8 30 51-80 257-286 (416)
122 cd06207 CyPoR_like NADPH cytoc 21.5 1E+02 0.0022 31.2 3.8 30 51-80 222-251 (382)
123 PRK12809 putative oxidoreducta 21.4 1.2E+02 0.0027 32.9 4.5 33 56-88 307-339 (639)
124 PTZ00383 malate:quinone oxidor 21.4 1E+02 0.0023 32.7 3.9 57 57-115 43-103 (497)
125 PTZ00274 cytochrome b5 reducta 21.3 84 0.0018 31.5 3.0 24 58-81 158-181 (325)
126 PRK06222 ferredoxin-NADP(+) re 21.3 2.1E+02 0.0046 27.6 5.8 32 59-90 98-132 (281)
127 KOG3851 Sulfide:quinone oxidor 21.1 1E+02 0.0022 31.9 3.6 37 58-94 38-75 (446)
128 PRK05713 hypothetical protein; 21.1 87 0.0019 30.7 3.0 24 58-81 191-214 (312)
129 PRK08849 2-octaprenyl-3-methyl 21.0 90 0.0019 31.1 3.2 30 60-89 4-33 (384)
130 KOG0534 NADH-cytochrome b-5 re 20.8 1.1E+02 0.0023 30.6 3.6 27 56-82 153-179 (286)
131 cd06220 DHOD_e_trans_like2 FAD 20.4 1.4E+02 0.0029 27.8 4.1 33 59-91 88-122 (233)
132 TIGR03315 Se_ygfK putative sel 20.4 1E+02 0.0022 36.0 3.7 33 56-88 534-566 (1012)
133 cd06202 Nitric_oxide_synthase 20.4 1.1E+02 0.0024 31.4 3.8 30 51-80 238-267 (406)
134 PLN03115 ferredoxin--NADP(+) r 20.4 1E+02 0.0022 31.6 3.5 24 57-80 213-236 (367)
135 PRK09853 putative selenate red 20.2 1E+02 0.0022 36.1 3.6 33 56-88 536-568 (1019)
136 PRK12767 carbamoyl phosphate s 20.0 1.3E+02 0.0029 29.0 4.1 33 60-93 2-34 (326)
No 1
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=100.00 E-value=2.3e-64 Score=493.00 Aligned_cols=216 Identities=38% Similarity=0.590 Sum_probs=200.0
Q ss_pred EEEEeCCcchhHHHHHHHcccCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHh-cCcCC
Q 017496 62 LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLL-GHRLP 140 (370)
Q Consensus 62 IVv~sGGTG~~~LlrgLk~~~~~iT~IVnv~DDGGSSG~LR~~~G~~a~GDIR~~L~aLA~~~~~~~~~l~~Lf-~~Rf~ 140 (370)
||+||||||++++++|||++++++|+||||+|||||||+||++||+++||||||||++||+.++. ...++ +|||.
T Consensus 1 iV~igGGtGl~~ll~gLk~~~~~itaIVtv~DdGGSSG~Lr~~~g~~~~GDiR~~L~aLa~~~~~----~~~~~~~~~~~ 76 (308)
T cd07187 1 IVAFGGGTGLSTLLRGLKKYTHNLTAIVTVTDDGGSSGRLRRELGIPAPGDIRNRLVALADDESL----AQKLFFLYRRF 76 (308)
T ss_pred CEEEeccccHHHHHHHHHhcCCceEEEEECCCCCccchhHHHHcCCCCCCcHHHHHHHhcCCCch----hHHHHHHhccc
Confidence 69999999999999999999999999999999999999999999999999999999999998863 33444 67775
Q ss_pred CCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 017496 141 LHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLF 220 (370)
Q Consensus 141 ~~~~~~~~ew~~i~~g~H~lw~~i~~~~~~~ir~fl~~f~~e~l~~~~~~fdl~~hsiGNL~lag~~l~~gsl~~Ai~~~ 220 (370)
. +++|++||+|||+|+|+++++|++.+|++.+
T Consensus 77 ~------------------------------------------------~~~l~gh~~GNl~L~a~~~~~g~~~~ai~~~ 108 (308)
T cd07187 77 G------------------------------------------------DFDLRGHSLGNLILAALTLITGSFAEAILLL 108 (308)
T ss_pred C------------------------------------------------CCccccCcHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4 3789999999999999999999999999999
Q ss_pred HhhcCCCCCCeEEeCccCCCceEEEEEeCCCcEEeeeeeecCCCCCCCCcccccccCCCCCCCCccEEEEecCCCCCCcc
Q 017496 221 SRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLH 300 (370)
Q Consensus 221 s~~lgI~~~g~VlP~~~Tdd~v~L~a~l~dG~~i~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~~~~~~~~~~ 300 (370)
+++++|+ ++|+|| |+++++|+|+++||++++||++|+++. +.++|++|||.+.+
T Consensus 109 ~~~l~v~--g~VlP~--t~~~v~l~a~~~dG~~v~Ge~~i~~~~----------------~~~~I~~v~l~~~~------ 162 (308)
T cd07187 109 SRLLGVR--GRVLPV--TNDPLHLVAELEDGTIVRGESRISHLE----------------LGSPIKRVFLEPPD------ 162 (308)
T ss_pred HHHhCCC--cEEEcc--cCCceEEEEEECCCCEEEEEEEeecCC----------------CCCCceEEEEECCC------
Confidence 9999998 899999 599999999999999999999998741 36899999998763
Q ss_pred ccCCCCCHHHHHHHhcCCEEEEcCCCchhhhhhhcccCCcChhHHHHHHhhcccccceeEEEEecCC
Q 017496 301 EVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSPYQFWSKIHFSMFMSILMFHALLFFYDNID 367 (370)
Q Consensus 301 ~~~~~~~p~vl~AI~~ADlIVigPGSlyTSIlP~Llv~Gi~~~~i~~a~~~~~~~~~~~~~~~~~~~ 367 (370)
|+++|+|++||++||+||||||||||||+|||+++| |++|++++ +|.+|||||+-
T Consensus 163 ---~~~~~~a~~AI~~AD~Iv~gPGSlyTSI~P~Llv~g-----I~eAi~~s----~a~kV~v~N~~ 217 (308)
T cd07187 163 ---PKANPEALEAIEEADLIVYGPGSLYTSILPNLLVKG-----IAEAIRAS----KAPKVYICNLM 217 (308)
T ss_pred ---CCCCHHHHHHHHhCCEEEECCCccHHHhhhhcCchh-----HHHHHHhC----CCCEEEEecCC
Confidence 899999999999999999999999999999999998 58999999 99999999984
No 2
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=100.00 E-value=4.4e-64 Score=490.66 Aligned_cols=214 Identities=29% Similarity=0.437 Sum_probs=201.2
Q ss_pred EEEEeCCcchhHHHHHHHcccCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHhcCcCCC
Q 017496 62 LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPL 141 (370)
Q Consensus 62 IVv~sGGTG~~~LlrgLk~~~~~iT~IVnv~DDGGSSG~LR~~~G~~a~GDIR~~L~aLA~~~~~~~~~l~~Lf~~Rf~~ 141 (370)
||+||||||++++++|||++++++|+||||+|||||||+||+++|++++|||||||.+||+.+. .|.+||+|||..
T Consensus 1 vV~igGGtGl~~ll~gLk~~~~~ltaIVtv~DdGGSSg~lr~~~g~~~~GDiRn~L~aLa~~~~----~~~~lf~yRf~~ 76 (310)
T TIGR01826 1 VVAIGGGTGLSVLLRGLKELDSRITAIVTVADDGGSSGRLREELDVPPPGDLRNCLAALSDDPS----LLSKLFQYRFGG 76 (310)
T ss_pred CEEEeCcchHHHHHHHHHhcCCCcEEEEECCcCCcchHHHHHhcCCCCCcHHHHHHHHhCcCCh----HHHHHHhccCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999873 789999999975
Q ss_pred CchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 017496 142 HPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFS 221 (370)
Q Consensus 142 ~~~~~~~ew~~i~~g~H~lw~~i~~~~~~~ir~fl~~f~~e~l~~~~~~fdl~~hsiGNL~lag~~l~~gsl~~Ai~~~s 221 (370)
+ .|+++||+||++|+++...+|+|.+||+.+|
T Consensus 77 ~------------------------------------------------~dl~gh~~GNl~Laal~~~~g~~~~Ai~~~~ 108 (310)
T TIGR01826 77 G------------------------------------------------GELSGHSLGNLMLAALSEISGSFLEAINLLS 108 (310)
T ss_pred C------------------------------------------------CcccCCcHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 2 4799999999999999999999999999999
Q ss_pred hhcCCCCCCeEEeCccCCCceEEEEEeCCCcEEeeeeeecCCCCCCCCcccccccCCCCCCCCccEEEEecCCCCCCccc
Q 017496 222 RVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHE 301 (370)
Q Consensus 222 ~~lgI~~~g~VlP~~~Tdd~v~L~a~l~dG~~i~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~~~~~~~~~~~ 301 (370)
++++|+ ++|+|| |+++++|+|+++||++++||++|+.. ..+|++|||.+.
T Consensus 109 ~~l~v~--g~VlP~--t~~~v~L~a~~~dG~~v~Ge~~i~~~------------------~~~I~~v~l~~~-------- 158 (310)
T TIGR01826 109 KILKVK--GRVLPM--SEHPVTLVAEFEDGREVRGESNIPKM------------------GGKIDRVRLEPE-------- 158 (310)
T ss_pred HHhCCC--CEEECC--CCCceEEEEEECCCCEEEEEEhhhcC------------------CCCceEEEEeCC--------
Confidence 999998 899999 69999999999999999999999742 567999999874
Q ss_pred cCCCCCHHHHHHHhcCCEEEEcCCCchhhhhhhcccCCcChhHHHHHHhhcccccceeEEEEecCC
Q 017496 302 VFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSPYQFWSKIHFSMFMSILMFHALLFFYDNID 367 (370)
Q Consensus 302 ~~~~~~p~vl~AI~~ADlIVigPGSlyTSIlP~Llv~Gi~~~~i~~a~~~~~~~~~~~~~~~~~~~ 367 (370)
.++++|+|++||++||+||||||||||||+|||+++| |++|++.+ +|.+|||||+-
T Consensus 159 -~~~a~~~al~AI~~ADlIvlgPGSlyTSIiPnLlv~g-----I~eAI~~s----~a~kV~v~N~~ 214 (310)
T TIGR01826 159 -DVPALREAVEAIREADLIILGPGSLYTSIIPNLLVPE-----IAEALRES----KAPKVYVCNLM 214 (310)
T ss_pred -CCCCCHHHHHHHHhCCEEEECCCcCHHHhchhcCchh-----HHHHHHhC----CCCEEEEeCCC
Confidence 4889999999999999999999999999999999998 58999988 99999999984
No 3
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=100.00 E-value=7e-63 Score=482.56 Aligned_cols=216 Identities=29% Similarity=0.454 Sum_probs=201.5
Q ss_pred EEEEeCCcchhHHHHHHHcccCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCChhHHHHHHHhcCcCCC
Q 017496 62 LLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDESTPEALAVRRLLGHRLPL 141 (370)
Q Consensus 62 IVv~sGGTG~~~LlrgLk~~~~~iT~IVnv~DDGGSSG~LR~~~G~~a~GDIR~~L~aLA~~~~~~~~~l~~Lf~~Rf~~ 141 (370)
||+||||||++++++|||+++.++|+||||+|||||||+||++||+++|||||||||+||+.++ .+.++|+|||..
T Consensus 1 iv~igGGtGl~~ll~gLk~~~~~ltaIVtv~DdGgssg~LR~~~g~~~~GDir~~L~aLa~~~~----~~~~l~~~Rf~~ 76 (309)
T cd07044 1 VVVFGGGTGLPVLLRGLKEFPVEITAIVTVADDGGSSGELRNXQDIPPPGDLRNVLVALSDQED----RLEQLFQYRKEE 76 (309)
T ss_pred CEEEeccccHHHHHHHHHhcCCceEEEEECCcCCccchhHHhccCCCCCccHHHHHHHhCCCCh----HHHHHhcccccc
Confidence 7999999999999999999999999999999999999999999999999999999999999875 588899999863
Q ss_pred CchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 017496 142 HPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFLFS 221 (370)
Q Consensus 142 ~~~~~~~ew~~i~~g~H~lw~~i~~~~~~~ir~fl~~f~~e~l~~~~~~fdl~~hsiGNL~lag~~l~~gsl~~Ai~~~s 221 (370)
. .+++.+|++|||++++++...+++.+||+.+|
T Consensus 77 ~-----------------------------------------------~~~l~gh~~GNL~l~~l~~~~~~~~~ai~~~~ 109 (309)
T cd07044 77 G-----------------------------------------------INEGLGHSLGNLAIAGXTSITGDFTDAIVELS 109 (309)
T ss_pred C-----------------------------------------------CCCccCCcHHHHHHHHHHHhccCHHHHHHHHH
Confidence 1 14799999999999999999999999999999
Q ss_pred hhcCCCCCCeEEeCccCCCceEEEEEeCCCcEEeeeeeecCCCCCCCCcccccccCCCCCCCCccEEEEecCCCCCCccc
Q 017496 222 RVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEGSNLLHE 301 (370)
Q Consensus 222 ~~lgI~~~g~VlP~~~Tdd~v~L~a~l~dG~~i~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~~~~~~~~~~~ 301 (370)
++++|+ ++|+|| |+++++|+|+++||+.+.||++|.+ ..++|++|||.+.+
T Consensus 110 ~~l~v~--g~VlP~--t~~~v~l~a~~~dG~~v~gq~~i~~------------------~~~~I~~v~l~~~~------- 160 (309)
T cd07044 110 KVFNIK--GNILPS--SDDPVSLHAEXEDGTIVHGESFIPK------------------GEKKIDRVFLTPVD------- 160 (309)
T ss_pred HHhCCC--CEEEcC--cCCceEEEEEECCCceEeeeeeeec------------------CCCCceEEEEcCCC-------
Confidence 999998 899999 6999999999999999999999973 36899999998753
Q ss_pred cCCCCCHHHHHHHhcCCEEEEcCCCchhhhhhhcccCCcChhHHHHHHhhcccccceeEEEEecCC
Q 017496 302 VFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSPYQFWSKIHFSMFMSILMFHALLFFYDNID 367 (370)
Q Consensus 302 ~~~~~~p~vl~AI~~ADlIVigPGSlyTSIlP~Llv~Gi~~~~i~~a~~~~~~~~~~~~~~~~~~~ 367 (370)
.|+++|++++||++||+||||||||||||+|||+++| |++|++.+ +|.+|||||+-
T Consensus 161 -~~~~~~~~l~AI~~ADlIvlgPGSlyTSI~P~Llv~g-----i~eAi~~s----~a~kV~V~ni~ 216 (309)
T cd07044 161 -EASPSREVLEAIEKADNIVIGPGSLYTSILPNISVPG-----IREALKKT----XAKKVYVSNIX 216 (309)
T ss_pred -CCCCCHHHHHHHHhCCEEEECCCcCHHHhhhhcCcHh-----HHHHHHhc----CCCeEEECCCC
Confidence 4899999999999999999999999999999999998 58999988 99999999984
No 4
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=100.00 E-value=6.6e-62 Score=474.43 Aligned_cols=219 Identities=35% Similarity=0.504 Sum_probs=183.6
Q ss_pred EEEEeCCcchhHHHHHHHcc-cCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHh-cCCCChhHHHHHHHhcCcC
Q 017496 62 LLVFSGGTAFNGVVEELKNI-TTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRL-SDESTPEALAVRRLLGHRL 139 (370)
Q Consensus 62 IVv~sGGTG~~~LlrgLk~~-~~~iT~IVnv~DDGGSSG~LR~~~G~~a~GDIR~~L~aL-A~~~~~~~~~l~~Lf~~Rf 139 (370)
||+||||||++++++|||++ +.++|+||||+|||||||+||+++|+++|||||||||+| ++.+. .|.+||+|||
T Consensus 1 Ivvl~GGtG~~~ll~gL~~~~~~~lt~IV~~~DdggssG~LR~~~~~~~pGDir~~l~aL~a~~~~----~~~~l~~~rf 76 (300)
T PF01933_consen 1 IVVLGGGTGLSKLLRGLKRVPPHDLTAIVNTADDGGSSGRLRRELGIIPPGDIRNCLYALIADEEE----TWWGLFGYRF 76 (300)
T ss_dssp EEEEE-SCHHHHHHHHHTTS-SEEEEEEE--CT-SHHHHHHHHHCTSE-HHHHHHHHHHH-STTTC----HHHHHCT-B-
T ss_pred CEEEeCcccHHHHHHHHHHhCCCCeEEEEECccCCccchhhHhhcCCCCcchHHHHHHHhcCCCch----HHHHhhCCEe
Confidence 79999999999999999999 999999999999999999999999999999999999999 87643 6888999999
Q ss_pred CCCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcccccchhHHHHHHHHHHhcCCHHHHHHH
Q 017496 140 PLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDAAIFL 219 (370)
Q Consensus 140 ~~~~~~~~~ew~~i~~g~H~lw~~i~~~~~~~ir~fl~~f~~e~l~~~~~~fdl~~hsiGNL~lag~~l~~gsl~~Ai~~ 219 (370)
+++ .+|+|++||+|||++++++...|+|++||+.
T Consensus 77 ~~~----------------------------------------------~~~~l~~hslGNl~l~~~~~~~~~~~~ai~~ 110 (300)
T PF01933_consen 77 SGD----------------------------------------------GDFDLAGHSLGNLFLTALLEIGGSLSEAIDE 110 (300)
T ss_dssp CHC----------------------------------------------CSCSGTT-BHHHHHHHHHHHHHTSHHHHHHH
T ss_pred ccc----------------------------------------------CCccHhhCchhHHHHHHHHHHCCCHHHHHHH
Confidence 821 1379999999999999999999999999999
Q ss_pred HHhhcCCCCCCeEEeCccCCCceEEEEEeCCC----cEEeeeeeecCCCCCCCCcccccccCCCCCCCCccEEEEecCCC
Q 017496 220 FSRVSDIPSESQVLPVISTNDRLTLGCELGDG----TVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSEG 295 (370)
Q Consensus 220 ~s~~lgI~~~g~VlP~~~Tdd~v~L~a~l~dG----~~i~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~~~~~ 295 (370)
+|++++|+ ++|+|| |+++++|+|+++|| +++.||++|+++ ++++|++|+|.+.
T Consensus 111 ~~~~l~i~--~~VlP~--t~~~v~l~a~~~dG~~~~~~v~ge~~I~~~-----------------~~~~I~~v~~~~~-- 167 (300)
T PF01933_consen 111 FSRLLGIR--GRVLPM--TDDPVHLVAELEDGLEFQEIVRGESWISHR-----------------CKPPIRRVFLEGA-- 167 (300)
T ss_dssp HHHHTT-S--SEEEES--BSS-EEEEEEETTSEEHH-EEESCCCCCST-----------------S-S-EEEEEEECT--
T ss_pred HHHHhCCC--CcEecC--cCCceEEEEEEcCCCcceeEEcceEeeccc-----------------CCCcccEEEEecC--
Confidence 99999998 899999 69999999999999 999999999873 4789999999853
Q ss_pred CCCccccCCCCCHHHHHHHhcCCEEEEcCCCchhhhhhhcccCCcChhHHHHHHhhcccccceeEEEEecCC
Q 017496 296 SNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSPYQFWSKIHFSMFMSILMFHALLFFYDNID 367 (370)
Q Consensus 296 ~~~~~~~~~~~~p~vl~AI~~ADlIVigPGSlyTSIlP~Llv~Gi~~~~i~~a~~~~~~~~~~~~~~~~~~~ 367 (370)
+..|+++|+|++||++||+||||||||||||+|||++|| |++||+.+ +|.+|||||+-
T Consensus 168 -----~~~~~~~p~~l~AI~~AD~IiigPgs~~TSI~P~L~v~g-----i~~Ai~~s----~a~kV~V~ni~ 225 (300)
T PF01933_consen 168 -----PEEAKANPEALEAIEEADLIIIGPGSLYTSIIPNLLVPG-----IREAIRES----KAPKVYVSNIM 225 (300)
T ss_dssp -----STT--B-HHHHHHHHH-SEEEE-SS-CCCCCHHHHTSHH-----HHHHHHHS----SSEEEEE-SSB
T ss_pred -----ccccCCCHHHHHHHHhCCEEEEcCCCchhhhcccccchh-----HHHHHHhC----CCCEEEEcCCC
Confidence 115899999999999999999999999999999999997 58999999 99999999984
No 5
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-57 Score=445.26 Aligned_cols=223 Identities=28% Similarity=0.407 Sum_probs=204.6
Q ss_pred CCCeEEEEeCCcchhHHHHHHHccc-CCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhc-CCCChhHHHHHHHh
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNIT-TRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLS-DESTPEALAVRRLL 135 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~-~~iT~IVnv~DDGGSSG~LR~~~G~~a~GDIR~~L~aLA-~~~~~~~~~l~~Lf 135 (370)
+++|||++|||||++++++|||++. .++|+||||+|||||||+||.+.|++++||+|||+.+|+ +.+. + ..+.+||
T Consensus 6 ~~~kvvvlgGGtGl~~lL~gLk~~~~~~iTaIVtvaDdggssG~lr~~~~~~~~GD~rn~l~al~~~~e~-~-~~~e~L~ 83 (323)
T COG0391 6 KKPKVVVLGGGTGLPKLLSGLKRLLPSEITAIVTVADDGGSSGRLRLDTGLYPPGDLRNCLAALGIDEET-F-RTHERLF 83 (323)
T ss_pred cCceEEEEcCCCCHHHHHHHHHhhcCceEEEEEEecccCCcCceeeeecCCCCChhHHHHHHHhccCCcc-h-hHHHHHH
Confidence 6899999999999999999999998 799999999999999999999999999999999999999 5543 3 2588999
Q ss_pred cCcCCCCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcccccchhHHHHHHHHHHhcCCHHH
Q 017496 136 GHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQSLDA 215 (370)
Q Consensus 136 ~~Rf~~~~~~~~~ew~~i~~g~H~lw~~i~~~~~~~ir~fl~~f~~e~l~~~~~~fdl~~hsiGNL~lag~~l~~gsl~~ 215 (370)
+|||..+ .+.+.+|++||++++|+.+..+++.+
T Consensus 84 qyrf~~~-----------------------------------------------~g~L~gh~lgnl~l~a~~~~~~~~~~ 116 (323)
T COG0391 84 QYRFGEG-----------------------------------------------NGELGGHDLGNLMLAALSLISGSLSE 116 (323)
T ss_pred hcccCCC-----------------------------------------------CCcccCccchhHHHHHHHhhcCCHHH
Confidence 9999842 25699999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCeEEeCccCCCceEEEEEeCCC-cEEeeeeeecCCCCCCCCcccccccCCCCCCCCccEEEEecCC
Q 017496 216 AIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDG-TVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYMSSE 294 (370)
Q Consensus 216 Ai~~~s~~lgI~~~g~VlP~~~Tdd~v~L~a~l~dG-~~i~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~~~~ 294 (370)
|++.++++++++ ++|+|| ||++++|.|+++|| .+|+||+||.... ..+|++|+|.+++
T Consensus 117 Ai~~~~~~l~v~--~~vlP~--sdd~v~l~a~~~dG~~~v~gE~~i~~~~-----------------~~~v~~V~~~~~~ 175 (323)
T COG0391 117 AIDALSKLLGVK--GRVLPM--SDDPVDLVAETEDGRRIVFGESWIAELG-----------------GPPVHRVRLEGPE 175 (323)
T ss_pred HHHHHHHHhCCC--ceEeec--CCCceeEEEEcCCCcEEEeeeechhhcC-----------------CCcceEEEEecCC
Confidence 999999999998 899999 69999999999999 6999999997531 3449999999654
Q ss_pred CCCCccccCCCCCHHHHHHHhcCCEEEEcCCCchhhhhhhcccCCcChhHHHHHHhhcccccceeEEEEecCC
Q 017496 295 GSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSPYQFWSKIHFSMFMSILMFHALLFFYDNID 367 (370)
Q Consensus 295 ~~~~~~~~~~~~~p~vl~AI~~ADlIVigPGSlyTSIlP~Llv~Gi~~~~i~~a~~~~~~~~~~~~~~~~~~~ 367 (370)
+|+++|+|++||++||+||||||||||||+|||++|| |++|++++ .|.++|+||+-
T Consensus 176 --------~~~a~~eaveAI~~AD~IviGPgSl~TSIlP~Lllp~-----I~eaLr~~----~ap~i~v~n~~ 231 (323)
T COG0391 176 --------KPSAAPEAVEAIKEADLIVIGPGSLFTSILPILLLPG-----IAEALRET----VAPIVYVCNLM 231 (323)
T ss_pred --------CCCCCHHHHHHHHhCCEEEEcCCccHhhhchhhchhH-----HHHHHHhC----CCCEEEeccCC
Confidence 6999999999999999999999999999999999997 68999998 99999999984
No 6
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=100.00 E-value=2.4e-56 Score=434.20 Aligned_cols=214 Identities=17% Similarity=0.166 Sum_probs=188.8
Q ss_pred EEEEeCCcchhHHHHHHHccc--CCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCC---hhH------HH
Q 017496 62 LLVFSGGTAFNGVVEELKNIT--TRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDEST---PEA------LA 130 (370)
Q Consensus 62 IVv~sGGTG~~~LlrgLk~~~--~~iT~IVnv~DDGGSSG~LR~~~G~~a~GDIR~~L~aLA~~~~---~~~------~~ 130 (370)
||+||||||++++++|||++. .++|+||||+||||||| ++.|||||||||+||+..+ +|+ ..
T Consensus 1 Iv~lgGGtG~~~lL~GL~~~~~~~~lTaIVnvaDDgg~sG-------~~v~PDidtvlyaLa~~~~~~~~wG~~gdt~~~ 73 (303)
T cd07186 1 IVVLSGGTGGAKLLRGLKRVLDPEELTVVVNTGDDFWLSG-------LYVSPDLDTVLYTLAGLIDRETGWGIEGDTFNT 73 (303)
T ss_pred CEEEeCCccHHHHHHHHHhCCCCCceEEEEECCcCCcccC-------CeeCCcHHHHHHHhcCCCccccccCccCchHHH
Confidence 699999999999999999998 79999999999999999 4688999999999999765 233 24
Q ss_pred HHHHhcCcCCCCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcccccchhHHHHHHHHHHhc
Q 017496 131 VRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFF 210 (370)
Q Consensus 131 l~~Lf~~Rf~~~~~~~~~ew~~i~~g~H~lw~~i~~~~~~~ir~fl~~f~~e~l~~~~~~fdl~~hsiGNL~lag~~l~~ 210 (370)
+.+|++|||+ .|+.++ +.|+++|++||++|++++
T Consensus 74 ~~~l~~~g~~-------------------~~~~~g------------------------d~dla~H~~rnl~L~ag~--- 107 (303)
T cd07186 74 LEALERLGGE-------------------EWFRLG------------------------DRDRATHILRTEMLREGK--- 107 (303)
T ss_pred HHHHHHhCCc-------------------ccccCC------------------------CccccccHHHHHHHHccC---
Confidence 5555555553 244433 368999999999998865
Q ss_pred CCHHHHHHHHHhhcCCCCCCeEEeCccCCCceEEEEEeCCCcEEeeeeeecCCCCCCCCcccccccCCCCCCCCccEEEE
Q 017496 211 QSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFY 290 (370)
Q Consensus 211 gsl~~Ai~~~s~~lgI~~~g~VlP~~~Tdd~v~L~a~l~dG~~i~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l 290 (370)
+|++|++.+|++|+|+ ++|||| |+++++|+|+++||++++||+||.+. .+.+|++|+|
T Consensus 108 -~l~~a~~~l~~~L~v~--grVlPm--Sd~~v~l~a~~~dG~~~f~E~~V~~~-----------------~~~~i~~V~~ 165 (303)
T cd07186 108 -SLSEVTAELAERLGIK--ARILPM--SDDRVETRVVTDEGDLHFQEYWVRRR-----------------GEPEVRDVRF 165 (303)
T ss_pred -CHHHHHHHHHHHHCCC--CEEECC--cCCceEEEEEECCCCEEEEEEEEccc-----------------CCCCeEEEEe
Confidence 8999999999999998 899999 69999999999999999999999753 3679999999
Q ss_pred ecCCCCCCccccCCCCCHHHHHHHhcCCEEEEcCCCchhhhhhhcccCCcChhHHHHHHhhcccccceeEEEEecCC
Q 017496 291 MSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSPYQFWSKIHFSMFMSILMFHALLFFYDNID 367 (370)
Q Consensus 291 ~~~~~~~~~~~~~~~~~p~vl~AI~~ADlIVigPGSlyTSIlP~Llv~Gi~~~~i~~a~~~~~~~~~~~~~~~~~~~ 367 (370)
.+++ +++++|+|++||++||+||||||||||||+|||+||| |++||+.+ +|.+||||||-
T Consensus 166 ~~~e--------~a~~~p~vl~AI~~AD~IVlGPgsp~TSI~P~LlVpg-----I~eAL~~s----~A~vV~Vspii 225 (303)
T cd07186 166 VGAE--------EARPAPEVLEAIEDADLVIIGPSNPVTSIGPILALPG-----IREALRDK----KAPVVAVSPII 225 (303)
T ss_pred CCcc--------cCCCCHHHHHHHHhCCEEEECCCccHHHhhhhccchh-----HHHHHHhC----CCCEEEEcCCC
Confidence 8864 5899999999999999999999999999999999998 58999999 99999999984
No 7
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=100.00 E-value=1.4e-55 Score=427.25 Aligned_cols=211 Identities=18% Similarity=0.152 Sum_probs=185.6
Q ss_pred EEEeCCcchhHHHHHHHcc--cCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCC---hhH------HHH
Q 017496 63 LVFSGGTAFNGVVEELKNI--TTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDEST---PEA------LAV 131 (370)
Q Consensus 63 Vv~sGGTG~~~LlrgLk~~--~~~iT~IVnv~DDGGSSG~LR~~~G~~a~GDIR~~L~aLA~~~~---~~~------~~l 131 (370)
|+||||||+++|++|||++ +.++|+||||+|||||||. +.|||||||||+||+.++ +|+ ..+
T Consensus 1 ~~l~GGtG~~~lL~GLk~~~~~~~iTaIVnt~DD~~~sG~-------~v~PDidtvlyaLa~~~d~~~~wG~~~dt~~~~ 73 (297)
T TIGR01819 1 TVLSGGTGTPKLLQGLKEVLPDAELTVVVNTGEDVWVSGL-------LVCPDLDTVLYTLGGGIDRERWWGIADDTFHTH 73 (297)
T ss_pred CEEECCcCHHHHHHHHHhcCCCCceEEEEEcCcCCCCcCC-------EeCchHHHHHHHhCCCcccccccccccchHHHH
Confidence 5899999999999999999 7899999999999999995 488899999999999764 232 356
Q ss_pred HHHhcCcCCCCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcccccchhHHHHHHHHHHhcC
Q 017496 132 RRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARVFFQ 211 (370)
Q Consensus 132 ~~Lf~~Rf~~~~~~~~~ew~~i~~g~H~lw~~i~~~~~~~ir~fl~~f~~e~l~~~~~~fdl~~hsiGNL~lag~~l~~g 211 (370)
.+|++|||+ .|+.+++ .|+++|++||++|++++
T Consensus 74 ~~L~~~~~~-------------------~~~~lGd------------------------~dla~H~~r~~~L~ag~---- 106 (297)
T TIGR01819 74 ERLKELGVP-------------------EGLRLGD------------------------RDRATHIVRTQMLRAGH---- 106 (297)
T ss_pred HHHHHhCCc-------------------ccccCCc------------------------ccccccHHHHHHHHccC----
Confidence 667777764 3555543 68999999999999865
Q ss_pred CHHHHHHHHHhhcCCCCCCeEEeCccCCCceEEEEEeCCCcEEeeeeeecCCCCCCCCcccccccCCCCCCCCccEEEEe
Q 017496 212 SLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRVFYM 291 (370)
Q Consensus 212 sl~~Ai~~~s~~lgI~~~g~VlP~~~Tdd~v~L~a~l~dG~~i~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV~l~ 291 (370)
+|++|++.+|++|+|+ ++|||| |+++++|+|+++||++++||+||.+. .+.+|++|+|.
T Consensus 107 ~l~~a~~~l~~~L~v~--g~VlPm--Sdd~V~l~a~~~dG~~~fqE~~V~~~-----------------~~~~i~~V~~~ 165 (297)
T TIGR01819 107 SLSEVTEALCDAFGIK--ARLLPM--TDDEVSTYVETDEGAMHFQEFWVRRR-----------------GEPPVEDVDFR 165 (297)
T ss_pred CHHHHHHHHHHHHCCC--CEEECC--CCCceEEEEEECCCCeEcceEeeeec-----------------CCCCeeEEEEC
Confidence 8999999999999998 899999 69999999999999999999999764 36899999997
Q ss_pred cCCCCCCccccCCCCCHHHHHHHhcCCEEEEcCCCchhhhhhhcccCCcChhHHHHHHhhcccccceeEEEEecCC
Q 017496 292 SSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSPYQFWSKIHFSMFMSILMFHALLFFYDNID 367 (370)
Q Consensus 292 ~~~~~~~~~~~~~~~~p~vl~AI~~ADlIVigPGSlyTSIlP~Llv~Gi~~~~i~~a~~~~~~~~~~~~~~~~~~~ 367 (370)
+++ +++|+|+|++||++||+||||||||||||+|||+||| |++||+. |.+|||||+-
T Consensus 166 g~e--------~a~a~peal~AI~~AD~IIlGPgsp~TSI~P~LlVpg-----IreAL~~------a~vV~Vspii 222 (297)
T TIGR01819 166 GAE--------KASIAPKVLEAIRKEDNILIGPSNPITSIGPILSLPG-----IREALRD------KKVVAVSPIV 222 (297)
T ss_pred CCC--------CCCCCHHHHHHHHhCCEEEECCCccHHHhhhhcCchh-----HHHHHHc------CCEEEEccCc
Confidence 654 5899999999999999999999999999999999998 5888865 7999999984
No 8
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=100.00 E-value=6.6e-55 Score=423.81 Aligned_cols=214 Identities=17% Similarity=0.185 Sum_probs=187.5
Q ss_pred CeEEEEeCCcchhHHHHHHHcc--cCCeEEEEeCCCCCcchHHHHHHcCCCCCCcHHHHHHHhcCCCC---hhH------
Q 017496 60 PSLLVFSGGTAFNGVVEELKNI--TTRVAHVLPVSDDGGSTAEIVRVLGGPAVGDIRSRCLRLSDEST---PEA------ 128 (370)
Q Consensus 60 pkIVv~sGGTG~~~LlrgLk~~--~~~iT~IVnv~DDGGSSG~LR~~~G~~a~GDIR~~L~aLA~~~~---~~~------ 128 (370)
+|||+||||||++++++|||++ ..++|+||||+||||||| ++.|||||+|||+||+..+ +|+
T Consensus 1 ~~iv~lgGGtG~~~lL~GL~~~~~~~~iT~IVnt~DDggssG-------~~v~PDidtvlyaLa~~i~~~~~WG~~gdt~ 73 (303)
T PRK13606 1 MMITVLSGGTGTAKLLRGLKAVLPPEEITVVVNTGDDIWLHG-------LRVCPDLDTVMYTLAGLIDPERGWGIAGDTF 73 (303)
T ss_pred CeEEEEeCccCHHHHHHHHHhccCCCCeEEEEECCcCCCccC-------CEeCCChhhHHHHhhcccCcccccCccCchH
Confidence 5899999999999999999999 799999999999999999 4688899999999999743 343
Q ss_pred HHHHHHhcCcCCCCchhhhhhhhhhhcCccccccccCchhHHHHHHHhhhhhhhhhcCCCCCcccccchhHHHHHHHHHH
Q 017496 129 LAVRRLLGHRLPLHPQQAKSEWYNIVEGEHSLWKGVSKPYRETIRAFLSYFQNEILRRPNESFCFSNGSIGNFFFAGARV 208 (370)
Q Consensus 129 ~~l~~Lf~~Rf~~~~~~~~~ew~~i~~g~H~lw~~i~~~~~~~ir~fl~~f~~e~l~~~~~~fdl~~hsiGNL~lag~~l 208 (370)
..+.+|++|||. .|+.++ +.|+++|++||++|+++
T Consensus 74 ~~~~~L~~~~~~-------------------e~~~~G------------------------d~dla~H~~rnl~L~ag-- 108 (303)
T PRK13606 74 HTHEELARLGGP-------------------EWFGLG------------------------DRDRATHIVRTQLLRAG-- 108 (303)
T ss_pred HHHHHHHHcCCc-------------------ccccCC------------------------CccccccHHHHHHHHcc--
Confidence 345556666653 233332 36899999999999875
Q ss_pred hcCCHHHHHHHHHhhcCCCCCCeEEeCccCCCceEEEEEeCCCcEEeeeeeecCCCCCCCCcccccccCCCCCCCCccEE
Q 017496 209 FFQSLDAAIFLFSRVSDIPSESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHPTNGSMEPVKKERSAVPALPSRIKRV 288 (370)
Q Consensus 209 ~~gsl~~Ai~~~s~~lgI~~~g~VlP~~~Tdd~v~L~a~l~dG~~i~GE~~I~~~~~~~~~~~~k~~~~~~~~~~~I~rV 288 (370)
++|++|++.+|++|||+ ++|+|| ||++++|+|+++||+++|||+||.+. .+.+|++|
T Consensus 109 --~~l~~a~~~l~~~l~v~--~~VlPm--Sd~~v~l~a~~~~~~i~fqE~~V~~~-----------------~~~~v~~v 165 (303)
T PRK13606 109 --YPLSEVTEALCDRLGVG--ARLLPM--SDDPVETHVVTDEGELHFQEYWVRRR-----------------GEPPVLDV 165 (303)
T ss_pred --CCHHHHHHHHHHHhCCC--CEEECC--cCCceEEEEEECCCcEEeeeEEeecc-----------------CCCCeEEE
Confidence 59999999999999998 899999 69999999999999999999999864 37899999
Q ss_pred EEecCCCCCCccccCCCCCHHHHHHHhcCCEEEEcCCCchhhhhhhcccCCcChhHHHHHHhhcccccceeEEEEecCC
Q 017496 289 FYMSSEGSNLLHEVFPTANSAVLDQLNAVDCIIYAMGSLFTSICPSLVSPYQFWSKIHFSMFMSILMFHALLFFYDNID 367 (370)
Q Consensus 289 ~l~~~~~~~~~~~~~~~~~p~vl~AI~~ADlIVigPGSlyTSIlP~Llv~Gi~~~~i~~a~~~~~~~~~~~~~~~~~~~ 367 (370)
+|.+++ +++++|+|++||++||+||||||||||||+|||+||| |++|| + +|.+|||||+-
T Consensus 166 ~~~~~~--------~a~a~p~vl~AI~~AD~IiiGPgnp~TSI~P~L~v~g-----i~eAL--~----~a~vV~Vsp~I 225 (303)
T PRK13606 166 VFVGAE--------KAKPAPGVLEAIEEADAVIIGPSNPVTSIGPILAVPG-----IREAL--T----EAPVVAVSPII 225 (303)
T ss_pred EEeCcc--------cCCCCHHHHHHHHhCCEEEECCCccHHhhchhccchh-----HHHHH--h----CCCEEEEcCCC
Confidence 998864 4899999999999999999999999999999999998 58888 5 89999999974
No 9
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=59.20 E-value=11 Score=33.81 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=28.7
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcccCCeEEE
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~I 88 (370)
.+.+|+++|||.=..+.++.|.+..+++++|
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 5789999999999999999999999999977
No 10
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=58.26 E-value=11 Score=38.61 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=24.9
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcccCCeEEE
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~I 88 (370)
..+|||++|||.|.-.+++.|..-..+||.|
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI 39 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVI 39 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEE
Confidence 5679999999999988888886544667666
No 11
>PTZ00058 glutathione reductase; Provisional
Probab=55.17 E-value=12 Score=40.35 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=37.3
Q ss_pred hhhhhhhcccccCcCCCCCCCCCeEEEEeCCcchhHHHHHHHcccCCeEEE
Q 017496 38 SLTKSMSAATHCRCFSNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (370)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~I 88 (370)
|+.+..-.+|.|..+...+..+--|+|+|||.|....+..+.+...+++.|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValI 77 (561)
T PTZ00058 27 SFYHNLEASSAPTHLKKKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALV 77 (561)
T ss_pred chhhhhcccCcccccccCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEE
Confidence 344444556777766666666667999999999999999999987664433
No 12
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=47.28 E-value=15 Score=30.20 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=29.9
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcccCCeEEEEeCC
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVS 92 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~IVnv~ 92 (370)
++.+|+++|||--..+=++.|.+...++|+|-+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 57899999999999999999999988999887664
No 13
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=45.75 E-value=22 Score=33.17 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=27.8
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcccCCeEEEEe
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLP 90 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~IVn 90 (370)
.+.+|+|+|||.-...-++.|.+...++|+|-+
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 567999999999888888999988888887744
No 14
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=45.20 E-value=24 Score=32.81 Aligned_cols=32 Identities=9% Similarity=0.197 Sum_probs=28.2
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcccCCeEEEE
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~IV 89 (370)
.+.+|+++|||.=....++.|.+...++++|-
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence 57899999999999999999999888888773
No 15
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=44.97 E-value=24 Score=27.16 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=27.8
Q ss_pred eEEEEeCCcchhHHHHHHHcccCCeEEEEeCCCC
Q 017496 61 SLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDD 94 (370)
Q Consensus 61 kIVv~sGGTG~~~LlrgLk~~~~~iT~IVnv~DD 94 (370)
|||++|||--.-.++..|++...++|. +...|.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtl-i~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTL-IERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEE-EESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEE-Eeccch
Confidence 799999999999999999998877755 555665
No 16
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=43.95 E-value=24 Score=36.78 Aligned_cols=62 Identities=15% Similarity=0.114 Sum_probs=39.5
Q ss_pred CCCeEEEEeCCcchhHHHHHHHccc--CCeEEEEeCCCCCcchHHHHHHc-CCCCCCcHHHHHHHh
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNIT--TRVAHVLPVSDDGGSTAEIVRVL-GGPAVGDIRSRCLRL 120 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~--~~iT~IVnv~DDGGSSG~LR~~~-G~~a~GDIR~~L~aL 120 (370)
..+|||++|||-|.-.+++.|.+.. .++|. |.--|----+..|-+.. |.+..++|.--+-.+
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itL-Vd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~ 66 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITL-VDRRDYHLFTPLLYEVATGTLSESEIAIPLRAL 66 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEE-EeCCCccccchhhhhhhcCCCChhheeccHHHH
Confidence 4689999999999999999999875 55554 44444444444444433 445555554444333
No 17
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=42.71 E-value=27 Score=33.45 Aligned_cols=36 Identities=14% Similarity=0.012 Sum_probs=30.8
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcccCCeEEEEeCCC
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSD 93 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~IVnv~D 93 (370)
++.+|+|+|||.-..+=++.|.+...++|+|-+...
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 578999999999888888899999999999876643
No 18
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=42.28 E-value=43 Score=27.24 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=41.4
Q ss_pred CeEEEEeCCcchhHHHHHHHcccCCeEEEEeCCCCCcchH-HHHHHcCCCCCCcHHHHHH
Q 017496 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGGSTA-EIVRVLGGPAVGDIRSRCL 118 (370)
Q Consensus 60 pkIVv~sGGTG~~~LlrgLk~~~~~iT~IVnv~DDGGSSG-~LR~~~G~~a~GDIR~~L~ 118 (370)
.||.++|.|.-....++.+++...+. -|+.+.|...... ...+.+|.+...|++..+-
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~-~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~ 59 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDF-EVVAVCDPDPERAEAFAEKYGIPVYTDLEELLA 59 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTE-EEEEEECSSHHHHHHHHHHTTSEEESSHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCc-EEEEEEeCCHHHHHHHHHHhcccchhHHHHHHH
Confidence 37899999999999999999875444 3334445444333 3567899999999886444
No 19
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=41.83 E-value=36 Score=30.84 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=27.8
Q ss_pred CeEEEE--eCCcchhHHHHHHHcccCC--eEEEEeCCCCC
Q 017496 60 PSLLVF--SGGTAFNGVVEELKNITTR--VAHVLPVSDDG 95 (370)
Q Consensus 60 pkIVv~--sGGTG~~~LlrgLk~~~~~--iT~IVnv~DDG 95 (370)
|||+|| |+|+-+..++..+++-..+ +..||+-.|+.
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~~ 40 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNPDKP 40 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESSTTT
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEecccccc
Confidence 589999 7776677788888877665 77777777774
No 20
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=41.63 E-value=25 Score=36.12 Aligned_cols=29 Identities=7% Similarity=0.242 Sum_probs=23.6
Q ss_pred CeEEEEeCCcchhHHHHHHHccc--CCeEEE
Q 017496 60 PSLLVFSGGTAFNGVVEELKNIT--TRVAHV 88 (370)
Q Consensus 60 pkIVv~sGGTG~~~LlrgLk~~~--~~iT~I 88 (370)
+|||++|||.|.-..++.|++.. .+|+.|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li 32 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIF 32 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEE
Confidence 58999999999999999998764 445544
No 21
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=41.54 E-value=18 Score=31.08 Aligned_cols=21 Identities=14% Similarity=0.572 Sum_probs=18.5
Q ss_pred eEEEEeCCcchhHHHHHHHcc
Q 017496 61 SLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 61 kIVv~sGGTG~~~LlrgLk~~ 81 (370)
+||+++||+|..-++.-|.++
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l 23 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDL 23 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHH
T ss_pred EEEEEecCcCHHHHHHHHHHH
Confidence 699999999999988877765
No 22
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=41.38 E-value=34 Score=34.14 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=26.9
Q ss_pred CCeEEEEeCCcchhHHHHHHHcccCCeEEEE
Q 017496 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk~~~~~iT~IV 89 (370)
..+|+|+|||-+...++..|.+...++++|=
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E 48 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIE 48 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEe
Confidence 4689999999999999999999887776664
No 23
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=41.18 E-value=39 Score=30.79 Aligned_cols=33 Identities=15% Similarity=0.353 Sum_probs=24.1
Q ss_pred CeEEEEeCCcchhHHHHHHHccc------CCeEEEEeCC
Q 017496 60 PSLLVFSGGTAFNGVVEELKNIT------TRVAHVLPVS 92 (370)
Q Consensus 60 pkIVv~sGGTG~~~LlrgLk~~~------~~iT~IVnv~ 92 (370)
.++|+++||||+.-++.-++++. .+++.+..+-
T Consensus 105 ~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l~~~~r 143 (234)
T cd06183 105 KHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANR 143 (234)
T ss_pred cEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEEEEecC
Confidence 78999999999988887777652 3455555443
No 24
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=41.04 E-value=44 Score=30.02 Aligned_cols=25 Identities=12% Similarity=0.359 Sum_probs=20.6
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcc
Q 017496 57 HTQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 57 ~~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
....++++++||||+.-++.=|+++
T Consensus 95 ~~~~~~v~ia~G~Giap~~~~l~~~ 119 (223)
T cd00322 95 EESGPVVLIAGGIGITPFRSMLRHL 119 (223)
T ss_pred ccCCcEEEEecCCchhHHHHHHHHH
Confidence 3456899999999999988777765
No 25
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=40.68 E-value=39 Score=30.69 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=26.5
Q ss_pred CCeEEEEeCCcchhHHHHHHHccc-----CCeEEEEeCCC
Q 017496 59 QPSLLVFSGGTAFNGVVEELKNIT-----TRVAHVLPVSD 93 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk~~~-----~~iT~IVnv~D 93 (370)
..++++++||||..-++.=|+++. .+++.+..+.+
T Consensus 98 ~~~~lliagG~GI~p~~sll~~~~~~~~~~~v~l~~~~~~ 137 (224)
T cd06187 98 DRPVLCIAGGTGLAPLRAIVEDALRRGEPRPVHLFFGART 137 (224)
T ss_pred CCCEEEEecCcCHHHHHHHHHHHHhcCCCCCEEEEEecCC
Confidence 567999999999999888777653 45666666544
No 26
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=40.02 E-value=26 Score=30.79 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=24.5
Q ss_pred eEEEEeCCcchhHHHHHHHcccCCeEEE
Q 017496 61 SLLVFSGGTAFNGVVEELKNITTRVAHV 88 (370)
Q Consensus 61 kIVv~sGGTG~~~LlrgLk~~~~~iT~I 88 (370)
+||++|||.|.-..+..|++...+++.|
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii 28 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLII 28 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEE
Confidence 6999999999999999999776776666
No 27
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=39.27 E-value=51 Score=30.30 Aligned_cols=36 Identities=6% Similarity=0.201 Sum_probs=23.9
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcc-----cCCeEEEEeCCC
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNI-----TTRVAHVLPVSD 93 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~-----~~~iT~IVnv~D 93 (370)
...++++++||||..-++.=++++ ..+++.+..+-+
T Consensus 101 ~~~~~lliagG~Gitp~~s~~~~~~~~~~~~~v~l~~~~r~ 141 (231)
T cd06191 101 PPGRYLLVAAGSGITPLMAMIRATLQTAPESDFTLIHSART 141 (231)
T ss_pred CCCcEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEecCC
Confidence 346899999999998776655543 245555554433
No 28
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=38.50 E-value=41 Score=37.25 Aligned_cols=32 Identities=19% Similarity=0.031 Sum_probs=27.3
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcccCCeEEEE
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~IV 89 (370)
...+|+++|||.|.-.++.+|++...+++++=
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~E 111 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFE 111 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEe
Confidence 45799999999999999999999876666553
No 29
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=38.13 E-value=37 Score=34.37 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=26.0
Q ss_pred CCeEEEEeCCcch----hHHHHHHHcccCCeEEEE
Q 017496 59 QPSLLVFSGGTAF----NGVVEELKNITTRVAHVL 89 (370)
Q Consensus 59 ~pkIVv~sGGTG~----~~LlrgLk~~~~~iT~IV 89 (370)
-|||++.+||||. +.+++.|++...++..+-
T Consensus 5 ~~ki~i~aGgtsGhi~paal~~~l~~~~~~~~~~g 39 (385)
T TIGR00215 5 IPTIALVAGEASGDILGAGLRQQLKEHYPNARFIG 39 (385)
T ss_pred CCeEEEEeCCccHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3899999999987 688999998777777665
No 30
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=38.06 E-value=55 Score=38.09 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=29.8
Q ss_pred CCeEEEEeCCcchhHHHHHHHcccCCeEEEEeCCC
Q 017496 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSD 93 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk~~~~~iT~IVnv~D 93 (370)
+.+|+++|||.|.+-+.+.|++...++++|.. .|
T Consensus 893 ~k~vLLVgGGVGiApLak~Lk~~G~~V~~~~~-~d 926 (1028)
T PRK06567 893 NKKIVIVDFEVGNIGLLKVLKENNNEVIFVTY-PD 926 (1028)
T ss_pred CCeEEEEEccccHHHHHHHHHHCCCeEEEEEc-CC
Confidence 45899999999999999999998888998884 35
No 31
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=38.03 E-value=53 Score=30.47 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=25.9
Q ss_pred CCeEEEEeCCcchhHHHHHHHccc-----CCeEEEEeCCC
Q 017496 59 QPSLLVFSGGTAFNGVVEELKNIT-----TRVAHVLPVSD 93 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk~~~-----~~iT~IVnv~D 93 (370)
..++++++||||.+-++.=|+++. .+++.+..+-+
T Consensus 122 ~~~~v~iagG~Giap~~s~l~~~~~~~~~~~i~l~~~~r~ 161 (243)
T cd06216 122 PPRLLLIAAGSGITPVMSMLRTLLARGPTADVVLLYYART 161 (243)
T ss_pred CCCEEEEecCccHhHHHHHHHHHHhcCCCCCEEEEEEcCC
Confidence 568999999999999888777652 45666555543
No 32
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=37.52 E-value=38 Score=34.91 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=28.4
Q ss_pred CCCCCCCCeEEEEeCCcchhHHHHHHHcccCCeEEE
Q 017496 53 SNPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (370)
Q Consensus 53 ~~~~~~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~I 88 (370)
..+|..+.+|+|+|||-+.-..+..|.+...+++.+
T Consensus 134 ~~~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~li 169 (457)
T PRK11749 134 KRAPKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIF 169 (457)
T ss_pred CCCccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 345667889999999988888888888877776554
No 33
>PRK06753 hypothetical protein; Provisional
Probab=37.42 E-value=34 Score=33.58 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=25.2
Q ss_pred CeEEEEeCCcchhHHHHHHHcccCCeEEE
Q 017496 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (370)
Q Consensus 60 pkIVv~sGGTG~~~LlrgLk~~~~~iT~I 88 (370)
++|+++|||-+...++..|++...+++++
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~ 29 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVF 29 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 58999999999999999999987776554
No 34
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=37.32 E-value=67 Score=29.93 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=27.9
Q ss_pred CCCeEEEEeCCcchhHHHHHHHccc--CCeEEEEeCCCC
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNIT--TRVAHVLPVSDD 94 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~--~~iT~IVnv~DD 94 (370)
...++|+|+||||++-++.=|++.. .+++.+.-+-+.
T Consensus 119 ~~~~~vlia~GtGi~p~~~il~~~~~~~~~~~~~~~~~~ 157 (235)
T cd06193 119 DADWYLLAGDETALPAIAAILEELPADARGTALIEVPDA 157 (235)
T ss_pred CcceEEEEeccchHHHHHHHHHhCCCCCeEEEEEEECCH
Confidence 3458999999999999988888764 356666655544
No 35
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=36.61 E-value=37 Score=30.94 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=19.9
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcc
Q 017496 57 HTQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 57 ~~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
....++++++||||+.-++.=++++
T Consensus 95 ~~~~~~v~iagG~Giap~~~~l~~~ 119 (222)
T cd06194 95 YGEGPLLLVGAGTGLAPLWGIARAA 119 (222)
T ss_pred CCCCCEEEEecCcchhhHHHHHHHH
Confidence 3446899999999999888766654
No 36
>PRK07236 hypothetical protein; Provisional
Probab=36.59 E-value=39 Score=33.63 Aligned_cols=32 Identities=16% Similarity=0.007 Sum_probs=26.9
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcccCCeEEEE
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~IV 89 (370)
..++|+++|||-+...++..|++...+++++=
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E 36 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFE 36 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEe
Confidence 35899999999999999999999876665554
No 37
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=35.51 E-value=26 Score=36.51 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=30.8
Q ss_pred CHHHHHHHHHhhcCCCC-CCeEEeCccCCCceEEEEEeCCCcEEeeeeeecCC
Q 017496 212 SLDAAIFLFSRVSDIPS-ESQVLPVISTNDRLTLGCELGDGTVIRGQNEISHP 263 (370)
Q Consensus 212 sl~~Ai~~~s~~lgI~~-~g~VlP~~~Tdd~v~L~a~l~dG~~i~GE~~I~~~ 263 (370)
.|++.+...+.-.||+. +++|.=+...++.--..+.+++|..+.+.+.|..-
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDAS 207 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDAS 207 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-S
T ss_pred HHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECC
Confidence 57888888888888740 01221111112233346788899999999999754
No 38
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=35.21 E-value=51 Score=32.63 Aligned_cols=36 Identities=17% Similarity=0.091 Sum_probs=29.6
Q ss_pred CCCCCCCeEEEEeCCcchhHHHHHHHcccCCeEEEE
Q 017496 54 NPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (370)
Q Consensus 54 ~~~~~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~IV 89 (370)
.+|..+.+|+++|||.+.-..+..|++...+++.|=
T Consensus 13 ~~~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie 48 (352)
T PRK12770 13 KPPPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYD 48 (352)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEe
Confidence 456678899999999998888888888877777553
No 39
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=34.58 E-value=37 Score=34.45 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=23.7
Q ss_pred CeEEEEeCCcchhHHHHHHHcccC--CeEEE
Q 017496 60 PSLLVFSGGTAFNGVVEELKNITT--RVAHV 88 (370)
Q Consensus 60 pkIVv~sGGTG~~~LlrgLk~~~~--~iT~I 88 (370)
+|||++|||.|.-..+..|++... ++|.|
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli 31 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVY 31 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEE
Confidence 489999999999999999988743 55555
No 40
>PRK06847 hypothetical protein; Provisional
Probab=34.42 E-value=45 Score=32.67 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=25.9
Q ss_pred CCeEEEEeCCcchhHHHHHHHcccCCeEEE
Q 017496 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk~~~~~iT~I 88 (370)
..+|+|+|||-+...++..|++...+++++
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~ 33 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLV 33 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999987776555
No 41
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=34.28 E-value=45 Score=31.50 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=22.0
Q ss_pred cCCCCCCCCCeEEEEeCCcchhHHHHHHHcc
Q 017496 51 CFSNPTHTQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 51 ~~~~~~~~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
.|..+. .+.++|+++||||+.-++.=+++.
T Consensus 102 ~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~ 131 (245)
T cd06200 102 GFHLPD-DGRPLILIGNGTGLAGLRSHLRAR 131 (245)
T ss_pred cccCCC-CCCCEEEEecCcChHHHHHHHHHH
Confidence 454433 456899999999999887766654
No 42
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=34.17 E-value=46 Score=32.01 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=22.7
Q ss_pred cCCCCCCCCCeEEEEeCCcchhHHHHHHHcc
Q 017496 51 CFSNPTHTQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 51 ~~~~~~~~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
.|.-++....++|+++||||..-++.=+++.
T Consensus 107 ~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~ 137 (267)
T cd06182 107 SFRLPKDPTTPIIMVGPGTGIAPFRGFLQER 137 (267)
T ss_pred cccCCCCCCCCEEEEecCccHHHHHHHHHHH
Confidence 4444444467899999999999888766554
No 43
>PRK08163 salicylate hydroxylase; Provisional
Probab=33.96 E-value=44 Score=33.09 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=26.2
Q ss_pred CCeEEEEeCCcchhHHHHHHHcccCCeEEE
Q 017496 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk~~~~~iT~I 88 (370)
..+|+++|||-+...++..|++...+++++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~ 33 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLL 33 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEE
Confidence 468999999999999999999987776655
No 44
>PRK07538 hypothetical protein; Provisional
Probab=33.62 E-value=40 Score=33.93 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=25.0
Q ss_pred CeEEEEeCCcchhHHHHHHHcccCCeEEE
Q 017496 60 PSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (370)
Q Consensus 60 pkIVv~sGGTG~~~LlrgLk~~~~~iT~I 88 (370)
++|+++|||-+...++..|++...+++++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~ 29 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVF 29 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 58999999999999999999987665554
No 45
>PRK08051 fre FMN reductase; Validated
Probab=33.32 E-value=36 Score=31.62 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=19.3
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcc
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
.+.++|+++||||+.-++.=+++.
T Consensus 101 ~~~~~vliagG~GiaP~~~~l~~~ 124 (232)
T PRK08051 101 SERPLLLIAGGTGFSYARSILLTA 124 (232)
T ss_pred CCCcEEEEecCcCcchHHHHHHHH
Confidence 345799999999999888766654
No 46
>PTZ00494 tuzin-like protein; Provisional
Probab=32.64 E-value=82 Score=34.12 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=35.5
Q ss_pred CCCCCCCCeEEEEeCCcchhH--HHHHHHccc--CCeEEEEeCCCCCcchHHHHHHcC---CCCCCcHHH
Q 017496 53 SNPTHTQPSLLVFSGGTAFNG--VVEELKNIT--TRVAHVLPVSDDGGSTAEIVRVLG---GPAVGDIRS 115 (370)
Q Consensus 53 ~~~~~~~pkIVv~sGGTG~~~--LlrgLk~~~--~~iT~IVnv~DDGGSSG~LR~~~G---~~a~GDIR~ 115 (370)
+......|||+||.|..|+-| ++|.--+-. .-+-+=|-..+|-=.| +.+.+| +-+|||+=.
T Consensus 388 ~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~EDtLrs--VVKALgV~nve~CGDlLd 455 (664)
T PTZ00494 388 TQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGTEDTLRS--VVRALGVSNVEVCGDLLG 455 (664)
T ss_pred hhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCCcchHHH--HHHHhCCCChhhhccHHH
Confidence 344445799999999888865 444322222 3333334455664222 246777 458899743
No 47
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=32.52 E-value=38 Score=32.04 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=25.5
Q ss_pred eEEEEeCCcchhHHHHHHHcccCCeEEEEeCCC
Q 017496 61 SLLVFSGGTAFNGVVEELKNITTRVAHVLPVSD 93 (370)
Q Consensus 61 kIVv~sGGTG~~~LlrgLk~~~~~iT~IVnv~D 93 (370)
+|+|+|||-+...++..|++...++++|=--.+
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 699999999999999999999877666654443
No 48
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=32.44 E-value=42 Score=31.16 Aligned_cols=34 Identities=9% Similarity=0.317 Sum_probs=24.0
Q ss_pred CCCeEEEEeCCcchhHHHHHHHccc-----CCeEEEEeC
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNIT-----TRVAHVLPV 91 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~-----~~iT~IVnv 91 (370)
...++|+++||||..-++.-++++. .+++.+...
T Consensus 108 ~~~~~v~iagG~GiaP~~~~l~~~~~~~~~~~v~l~~~~ 146 (238)
T cd06211 108 DQRPIIFIAGGSGLSSPRSMILDLLERGDTRKITLFFGA 146 (238)
T ss_pred CCCCEEEEeCCcCHHHHHHHHHHHHhcCCCCcEEEEEec
Confidence 3468999999999998887666542 245555543
No 49
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=32.34 E-value=55 Score=30.51 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=25.5
Q ss_pred CCeEEEEeCCcchhHHHHHHHccc---CCeEEEEeCCC
Q 017496 59 QPSLLVFSGGTAFNGVVEELKNIT---TRVAHVLPVSD 93 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk~~~---~~iT~IVnv~D 93 (370)
..++++++||||++-++.=++++. .+++.+..+-+
T Consensus 97 ~~~~lliagGtGiap~~~~l~~~~~~~~~v~l~~~~r~ 134 (243)
T cd06192 97 GGTVLLVAGGIGLAPLLPIAKKLAANGNKVTVLAGAKK 134 (243)
T ss_pred CCEEEEEeCcccHHHHHHHHHHHHHCCCeEEEEEecCc
Confidence 568999999999988777666553 45666665543
No 50
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=32.28 E-value=65 Score=32.18 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=33.5
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcc-c-CCeEEE----EeCCCCCcchHHHHHHcC
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNI-T-TRVAHV----LPVSDDGGSTAEIVRVLG 106 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~-~-~~iT~I----Vnv~DDGGSSG~LR~~~G 106 (370)
....|+|+|||.-...++..|.+. . .++++| +.....+.++|.++..+.
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~~g~~~~~~~ 83 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYL 83 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccccceeeeccc
Confidence 456899999998777788888874 4 356555 234456677776665544
No 51
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=32.11 E-value=43 Score=33.72 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=23.1
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcccCC
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNITTR 84 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~~~ 84 (370)
++.+||++|||.+.-..++.|++...+
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~ 28 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFT 28 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCC
Confidence 346899999999999999999987643
No 52
>PRK07588 hypothetical protein; Provisional
Probab=31.62 E-value=46 Score=33.08 Aligned_cols=30 Identities=10% Similarity=-0.018 Sum_probs=25.8
Q ss_pred CeEEEEeCCcchhHHHHHHHcccCCeEEEE
Q 017496 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (370)
Q Consensus 60 pkIVv~sGGTG~~~LlrgLk~~~~~iT~IV 89 (370)
++|+++|||-+...++..|.+...+++++=
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E 30 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIE 30 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEe
Confidence 589999999999999999999877766553
No 53
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=31.54 E-value=61 Score=31.01 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=18.1
Q ss_pred eEEEEeCCcchhHHHHHHHccc
Q 017496 61 SLLVFSGGTAFNGVVEELKNIT 82 (370)
Q Consensus 61 kIVv~sGGTG~~~LlrgLk~~~ 82 (370)
+|++++||||.+-+..=++++.
T Consensus 109 ~vlliagGtG~aPl~~i~~~~~ 130 (252)
T COG0543 109 PVLLIAGGTGIAPLYAIAKELK 130 (252)
T ss_pred cEEEEecccCHhHHHHHHHHHH
Confidence 3999999999988877776653
No 54
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=31.13 E-value=53 Score=32.70 Aligned_cols=35 Identities=14% Similarity=0.331 Sum_probs=26.0
Q ss_pred CeEEEEeCCcchhHHHHHHHcccCCeEEEEeCCCC
Q 017496 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDD 94 (370)
Q Consensus 60 pkIVv~sGGTG~~~LlrgLk~~~~~iT~IVnv~DD 94 (370)
.+||++|||.|.-.+++.|++...+..++|=.-|+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 48999999999999999999875544333333344
No 55
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=31.11 E-value=47 Score=30.60 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=19.8
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcc
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
...++++++||||.+-++.=++++
T Consensus 107 ~~~~~llia~GtGiap~~~~~~~~ 130 (241)
T cd06214 107 GARHYVLFAAGSGITPVLSILKTA 130 (241)
T ss_pred CCCcEEEEecccChhhHHHHHHHH
Confidence 467999999999998888777654
No 56
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=30.93 E-value=58 Score=31.19 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=24.0
Q ss_pred CeEEEEeCCcchhH-----HHHHHHcccCCeEEE
Q 017496 60 PSLLVFSGGTAFNG-----VVEELKNITTRVAHV 88 (370)
Q Consensus 60 pkIVv~sGGTG~~~-----LlrgLk~~~~~iT~I 88 (370)
+||.++.||+|..- |+++|++..++++++
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv 34 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWL 34 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEE
Confidence 48999999999765 677888877888877
No 57
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=30.77 E-value=77 Score=29.38 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=20.1
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcc
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
...++|+++||||+.-++.-++.+
T Consensus 100 ~~~~~vlIagGtGiaP~~~~l~~~ 123 (241)
T cd06195 100 PGKRLWLLATGTGIAPFLSMLRDL 123 (241)
T ss_pred CCceEEEEeeccchhhHHHHHHHH
Confidence 356899999999999988777765
No 58
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=30.65 E-value=50 Score=33.24 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=24.7
Q ss_pred CeEEEEeCCcchhHHHHHHHcccC-CeEEEE
Q 017496 60 PSLLVFSGGTAFNGVVEELKNITT-RVAHVL 89 (370)
Q Consensus 60 pkIVv~sGGTG~~~LlrgLk~~~~-~iT~IV 89 (370)
+||+++|||-|.-.++..|++... +++++=
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~E 31 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFE 31 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 589999999999999999998763 555543
No 59
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=30.52 E-value=53 Score=31.06 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=28.2
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcccCCeEEEEeC
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPV 91 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~IVnv 91 (370)
.+.+||++|||.-...=++-|-+...++++|-+-
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence 5789999999998888888888888888887443
No 60
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=30.20 E-value=75 Score=32.84 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=28.6
Q ss_pred CCCCCCeEEEEeCCcchhHHHHHHHcccCCeEEEE
Q 017496 55 PTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (370)
Q Consensus 55 ~~~~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~IV 89 (370)
.|..+.+|+++|||-+.-..+.-|++...+++.+=
T Consensus 129 ~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie 163 (449)
T TIGR01316 129 APSTHKKVAVIGAGPAGLACASELAKAGHSVTVFE 163 (449)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEe
Confidence 45577899999999988888999998877766554
No 61
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=30.15 E-value=47 Score=30.44 Aligned_cols=23 Identities=26% Similarity=0.588 Sum_probs=19.1
Q ss_pred CCeEEEEeCCcchhHHHHHHHcc
Q 017496 59 QPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
..++++++||||..-++.=++++
T Consensus 98 ~~~ivliagG~GiaP~~~~l~~l 120 (224)
T cd06189 98 DRPLILIAGGTGFAPIKSILEHL 120 (224)
T ss_pred CCCEEEEecCcCHHHHHHHHHHH
Confidence 56899999999999987766655
No 62
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=30.12 E-value=61 Score=33.68 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=28.0
Q ss_pred CCCCCCeEEEEeCCcchhHHHHHHHcccCCeEEE
Q 017496 55 PTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (370)
Q Consensus 55 ~~~~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~I 88 (370)
.+..+.+|+++|||.+.-..+..|++...+++.+
T Consensus 139 ~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vi 172 (471)
T PRK12810 139 VKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVF 172 (471)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEE
Confidence 4456789999999999888999999887776654
No 63
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=30.12 E-value=49 Score=29.79 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=20.1
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcc
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
...++++++||+|..-++.=|+++
T Consensus 105 ~~~~~vliagG~GItp~~s~l~~l 128 (210)
T cd06186 105 SYDNVLLVAGGSGITFVLPILRDL 128 (210)
T ss_pred hCCeEEEEeccccHhhhHHHHHHH
Confidence 456899999999999888877665
No 64
>PRK05802 hypothetical protein; Provisional
Probab=30.00 E-value=70 Score=31.91 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=24.7
Q ss_pred CCCeEEEEeCCcchhHHHHHHHccc---CCeEEEEeC
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNIT---TRVAHVLPV 91 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~---~~iT~IVnv 91 (370)
.+.++++++||+|.+-++.-++++. .+++.+...
T Consensus 171 ~~~~~llIaGGiGIaPl~~l~~~l~~~~~~v~li~g~ 207 (320)
T PRK05802 171 KNGKSLVIARGIGQAPGVPVIKKLYSNGNKIIVIIDK 207 (320)
T ss_pred CCCeEEEEEeEEeHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 3468999999999999887776553 355555543
No 65
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=29.87 E-value=82 Score=28.60 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=25.8
Q ss_pred CCeEEEEeCCcchhHHHHHHHccc-----CCeEEEEeCCC
Q 017496 59 QPSLLVFSGGTAFNGVVEELKNIT-----TRVAHVLPVSD 93 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk~~~-----~~iT~IVnv~D 93 (370)
..++++++||||..-++.=++++. .+++.+..+-+
T Consensus 95 ~~~~vlia~GtGiap~~~~l~~~~~~~~~~~v~l~~~~r~ 134 (216)
T cd06198 95 RARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRD 134 (216)
T ss_pred CceEEEEccccCHHHHHHHHHHHHhcCCCceEEEEEEECC
Confidence 578999999999999888776653 35666655443
No 66
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=29.74 E-value=28 Score=28.65 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHhcCCCC
Q 017496 108 PAVGDIRSRCLRLSDEST 125 (370)
Q Consensus 108 ~a~GDIR~~L~aLA~~~~ 125 (370)
..|||+|+++++++....
T Consensus 30 ~G~gD~Rhvl~Tl~~~~~ 47 (100)
T PF14737_consen 30 LGCGDLRHVLKTLASLPR 47 (100)
T ss_pred ecCccHHHHHHHHHhccc
Confidence 478999999999998643
No 67
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=29.62 E-value=82 Score=28.80 Aligned_cols=36 Identities=6% Similarity=0.198 Sum_probs=24.1
Q ss_pred CCCeEEEEeCCcchhHHHHHHHccc-----CCeEEEEeCCC
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNIT-----TRVAHVLPVSD 93 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~-----~~iT~IVnv~D 93 (370)
...++++++||||..-++.-++++. .+++.+..+-+
T Consensus 106 ~~~~~vliagG~Giap~~~~~~~~~~~~~~~~i~l~~~~r~ 146 (235)
T cd06217 106 HGDPVVLLAGGSGIVPLMSMIRYRRDLGWPVPFRLLYSART 146 (235)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 3568999999999988776666542 34555554433
No 68
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=28.91 E-value=54 Score=33.81 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=26.6
Q ss_pred CeEEEEeCCcchhHHHHHHHcccCCeEEEEeCCCCCc
Q 017496 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGG 96 (370)
Q Consensus 60 pkIVv~sGGTG~~~LlrgLk~~~~~iT~IVnv~DDGG 96 (370)
+||||+|||.|.-..+..+++...++ +||.-.+-||
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~g~~V-~lie~~~~GG 36 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQNGKNV-TLIDEADLGG 36 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcE-EEEECCcccc
Confidence 58999999999999999898877664 4444333343
No 69
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=28.83 E-value=63 Score=31.25 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=19.6
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcc
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
...++++|+||||+.-++.=+++.
T Consensus 134 ~~~~~vlIagGtGIaP~~s~l~~~ 157 (286)
T cd06208 134 PNATLIMIATGTGIAPFRSFLRRL 157 (286)
T ss_pred CCCCEEEEecCccHHHHHHHHHHH
Confidence 346899999999999988877654
No 70
>PRK01581 speE spermidine synthase; Validated
Probab=28.63 E-value=56 Score=33.80 Aligned_cols=19 Identities=32% Similarity=0.621 Sum_probs=13.9
Q ss_pred CeEEEEeCCcchhHHHHHHH
Q 017496 60 PSLLVFSGGTAFNGVVEELK 79 (370)
Q Consensus 60 pkIVv~sGGTG~~~LlrgLk 79 (370)
.+|+++|||+|. .+...|+
T Consensus 152 krVLIIGgGdG~-tlrelLk 170 (374)
T PRK01581 152 KRVLILGGGDGL-ALREVLK 170 (374)
T ss_pred CEEEEECCCHHH-HHHHHHh
Confidence 599999999998 3334444
No 71
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=28.56 E-value=58 Score=33.64 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=21.5
Q ss_pred cCCCCCCCCCeEEEEeCCcchhHHHHHHHcc
Q 017496 51 CFSNPTHTQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 51 ~~~~~~~~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
.|..+.....++++++||||++-+..=+++.
T Consensus 259 ~f~lp~~~~~~lllIagGtGIAP~~s~l~~~ 289 (411)
T TIGR03224 259 TFLMPNHPESSIMMICTGTGSAPMRAMTERR 289 (411)
T ss_pred cccCCCCCCCCEEEEecccCcHHHHHHHHHH
Confidence 3444333356899999999999887655543
No 72
>PRK12831 putative oxidoreductase; Provisional
Probab=28.54 E-value=74 Score=33.16 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=28.2
Q ss_pred CCCCCCCeEEEEeCCcchhHHHHHHHcccCCeEEE
Q 017496 54 NPTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (370)
Q Consensus 54 ~~~~~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~I 88 (370)
..|..+.+|+++|||-+.-..+.-|++..++++++
T Consensus 135 ~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~ 169 (464)
T PRK12831 135 TEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIF 169 (464)
T ss_pred CcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence 34567899999999988888888898887776544
No 73
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=28.37 E-value=1.1e+02 Score=28.93 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=25.2
Q ss_pred CCCeEEEEeCCcchhHHHHHHHccc---CCeEEEEeCC
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNIT---TRVAHVLPVS 92 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~---~~iT~IVnv~ 92 (370)
...++++++||||+.-++.-++++. .+++.+..+-
T Consensus 97 ~~~~~vlIagGtGIaP~~s~l~~~~~~~~~v~l~~~~r 134 (246)
T cd06218 97 DDGKVLLVGGGIGIAPLLFLAKQLAERGIKVTVLLGFR 134 (246)
T ss_pred CCCcEEEEecccCHHHHHHHHHHHHhcCCceEEEEEcc
Confidence 4679999999999999887776653 3455544443
No 74
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=28.36 E-value=30 Score=33.69 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=22.9
Q ss_pred CCeEEEEeCCcchhHH----HHHHHcccCCeEEEEeCC
Q 017496 59 QPSLLVFSGGTAFNGV----VEELKNITTRVAHVLPVS 92 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~L----lrgLk~~~~~iT~IVnv~ 92 (370)
+-|||+||||||-|-. ..+|+...-+-.+|++.+
T Consensus 124 ~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~at 161 (238)
T COG0528 124 KGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKAT 161 (238)
T ss_pred cCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEec
Confidence 5699999999998754 346665544554555544
No 75
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=28.24 E-value=52 Score=30.19 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=18.4
Q ss_pred CCeEEEEeCCcchhHHHHHHHcc
Q 017496 59 QPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
..+|++++||||+.-++.=++++
T Consensus 97 ~~~illIagG~GiaP~~~~l~~~ 119 (232)
T cd06190 97 DRDIVCIAGGSGLAPMLSILRGA 119 (232)
T ss_pred CCcEEEEeeCcCHHHHHHHHHHH
Confidence 45899999999998887666654
No 76
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=28.19 E-value=56 Score=32.06 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=19.8
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcc
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
.+..+|+|+||||+.-++.=|++.
T Consensus 155 ~~~~~vlIAgGtGIaP~~sml~~~ 178 (307)
T PLN03116 155 PNATHIMVATGTGIAPFRGFLRRM 178 (307)
T ss_pred CCCcEEEEecCccHHHHHHHHHHH
Confidence 456899999999999988877654
No 77
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=28.12 E-value=93 Score=31.28 Aligned_cols=24 Identities=17% Similarity=0.490 Sum_probs=19.6
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcc
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
...++|+++||||+.-++.=++++
T Consensus 260 ~~~~~vlIagGtGIaP~~s~l~~~ 283 (399)
T PRK13289 260 SDTPVVLISGGVGITPMLSMLETL 283 (399)
T ss_pred CCCcEEEEecCccHHHHHHHHHHH
Confidence 356899999999999888766655
No 78
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=27.97 E-value=1.1e+02 Score=28.72 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=25.4
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcc---cCCeEEEEeC
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNI---TTRVAHVLPV 91 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~---~~~iT~IVnv 91 (370)
...++++++||||..-++.=+++. ..+++.+...
T Consensus 101 ~~~~~vlIagG~GiaP~~s~l~~~~~~~~~v~l~~~~ 137 (250)
T PRK00054 101 IGGKVLLVGGGIGVAPLYELAKELKKKGVEVTTVLGA 137 (250)
T ss_pred CCCeEEEEeccccHHHHHHHHHHHHHcCCcEEEEEEc
Confidence 456999999999999998766665 2456665543
No 79
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=27.81 E-value=70 Score=25.09 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=36.9
Q ss_pred eEEEEeCCcchhHHHHHHHccc---CCeEEEEeCCCCCcchHHHHHHcCCCCCC-cHH
Q 017496 61 SLLVFSGGTAFNGVVEELKNIT---TRVAHVLPVSDDGGSTAEIVRVLGGPAVG-DIR 114 (370)
Q Consensus 61 kIVv~sGGTG~~~LlrgLk~~~---~~iT~IVnv~DDGGSSG~LR~~~G~~a~G-DIR 114 (370)
||.++|+|.=...|+++|.+.. +++..+.. -+.-+..++.+.++..... |..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~--r~~~~~~~~~~~~~~~~~~~~~~ 56 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSS--RSPEKAAELAKEYGVQATADDNE 56 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEE--SSHHHHHHHHHHCTTEEESEEHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeecc--CcHHHHHHHHHhhccccccCChH
Confidence 7899999999999999999886 66665543 3333566667777754444 443
No 80
>PLN02712 arogenate dehydrogenase
Probab=27.71 E-value=90 Score=34.55 Aligned_cols=30 Identities=17% Similarity=0.033 Sum_probs=23.7
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcccCCeEE
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAH 87 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~ 87 (370)
+.++|.++|-|-=...++++|++...++++
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~ 80 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLA 80 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEE
Confidence 457899999887677899999987666544
No 81
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=27.19 E-value=46 Score=29.21 Aligned_cols=24 Identities=21% Similarity=0.491 Sum_probs=18.2
Q ss_pred CCHHHHHHHhcCCEEEEcCCCchh
Q 017496 306 ANSAVLDQLNAVDCIIYAMGSLFT 329 (370)
Q Consensus 306 ~~p~vl~AI~~ADlIVigPGSlyT 329 (370)
..+++.+.|++||+|.++-||.+-
T Consensus 25 ~~~~~~~~i~~ad~I~~~GG~~~~ 48 (154)
T PF03575_consen 25 NDADILEAIREADAIFLGGGDTFR 48 (154)
T ss_dssp GHHHHHHHHHHSSEEEE--S-HHH
T ss_pred ChHHHHHHHHhCCEEEECCCCHHH
Confidence 345999999999999999999875
No 82
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=26.96 E-value=58 Score=29.95 Aligned_cols=23 Identities=13% Similarity=0.515 Sum_probs=19.2
Q ss_pred CCeEEEEeCCcchhHHHHHHHcc
Q 017496 59 QPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
..++++++||||+.-++.=++++
T Consensus 103 ~~~~l~iagG~Giap~~~~l~~~ 125 (232)
T cd06212 103 DRPIVLIGGGSGMAPLLSLLRDM 125 (232)
T ss_pred CCcEEEEecCcchhHHHHHHHHH
Confidence 56899999999999987766654
No 83
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=26.93 E-value=1.3e+02 Score=29.22 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=16.2
Q ss_pred CCeEEEEeCCcchhHHHHHHH
Q 017496 59 QPSLLVFSGGTAFNGVVEELK 79 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk 79 (370)
...+++++||||+.-++.=++
T Consensus 108 ~~~~llIAgGtGIaP~~s~l~ 128 (289)
T PRK08345 108 GMDLLLIAGGLGMAPLRSVLL 128 (289)
T ss_pred CceEEEEecccchhHHHHHHH
Confidence 357999999999996555444
No 84
>PRK05868 hypothetical protein; Validated
Probab=26.67 E-value=65 Score=32.24 Aligned_cols=30 Identities=17% Similarity=-0.010 Sum_probs=25.8
Q ss_pred CeEEEEeCCcchhHHHHHHHcccCCeEEEE
Q 017496 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (370)
Q Consensus 60 pkIVv~sGGTG~~~LlrgLk~~~~~iT~IV 89 (370)
++|+++|||-+...++..|++...++++|=
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE 31 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVE 31 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEc
Confidence 479999999999999999999877766654
No 85
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=26.12 E-value=72 Score=30.48 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=26.2
Q ss_pred CCCCCCeEEEEeCCcchhHHHHHHHccc------CCeEEEEeCCCC
Q 017496 55 PTHTQPSLLVFSGGTAFNGVVEELKNIT------TRVAHVLPVSDD 94 (370)
Q Consensus 55 ~~~~~pkIVv~sGGTG~~~LlrgLk~~~------~~iT~IVnv~DD 94 (370)
++..+.++++++||||..-+..=++++. .+++.+...-+.
T Consensus 95 ~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~r~~ 140 (261)
T TIGR02911 95 DNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTP 140 (261)
T ss_pred CccCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEecCCH
Confidence 3334568999999999998866665442 245555554443
No 86
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=26.03 E-value=80 Score=31.82 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=22.9
Q ss_pred cCCCCCCCCCeEEEEeCCcchhHHHHHHHcc
Q 017496 51 CFSNPTHTQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 51 ~~~~~~~~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
.|.-++..+..|+++|||||++-+..=|.+.
T Consensus 205 ~F~lp~~~~~piImIa~GtGIAP~~s~l~~~ 235 (360)
T cd06199 205 HFRLPEDPDAPIIMVGPGTGIAPFRAFLQER 235 (360)
T ss_pred CcCCCCCCCCCEEEEecCcChHHHHHHHHHH
Confidence 4544444466899999999999987766643
No 87
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=25.87 E-value=1.2e+02 Score=28.13 Aligned_cols=57 Identities=7% Similarity=0.139 Sum_probs=35.6
Q ss_pred CCeEEEEeCCcchhHHHHHHHccc-CCeEEEEeCCCC-CcchHHHHHHcCCCCCCcHHH
Q 017496 59 QPSLLVFSGGTAFNGVVEELKNIT-TRVAHVLPVSDD-GGSTAEIVRVLGGPAVGDIRS 115 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk~~~-~~iT~IVnv~DD-GGSSG~LR~~~G~~a~GDIR~ 115 (370)
.+||.++|.|.-...++++|.+.. .++..|+.+.++ --..-.+.+.++.....|+..
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQ 62 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHH
Confidence 578999999999999999998653 344434433332 223334444566555556554
No 88
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=25.65 E-value=96 Score=30.56 Aligned_cols=38 Identities=8% Similarity=0.179 Sum_probs=28.2
Q ss_pred CCCeEEEEeCCcc------hhHHHHHHHcccCCeEEEEeCCCCC
Q 017496 58 TQPSLLVFSGGTA------FNGVVEELKNITTRVAHVLPVSDDG 95 (370)
Q Consensus 58 ~~pkIVv~sGGTG------~~~LlrgLk~~~~~iT~IVnv~DDG 95 (370)
+.+||++|++|+| ...+..+|++..++...|++..+..
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~ 46 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDLFGES 46 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEhHHhc
Confidence 5689999999998 4556667776666777777777653
No 89
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=25.64 E-value=55 Score=29.89 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=18.1
Q ss_pred CCeEEEEeCCcchhHHHHHHHcc
Q 017496 59 QPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
..++|+++||||.+-++.=++++
T Consensus 103 ~~~~vlIagG~Giap~~~~l~~~ 125 (231)
T cd06215 103 ADKLLLLSAGSGITPMMSMARWL 125 (231)
T ss_pred CCcEEEEecCcCcchHHHHHHHH
Confidence 56899999999999766655544
No 90
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=25.20 E-value=59 Score=29.93 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=19.1
Q ss_pred CCeEEEEeCCcchhHHHHHHHcc
Q 017496 59 QPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
..++++++||||+.-++.=++++
T Consensus 108 ~~~~vliagGtGiaP~~~~l~~~ 130 (236)
T cd06210 108 LRPRWFVAGGTGLAPLLSMLRRM 130 (236)
T ss_pred CccEEEEccCcchhHHHHHHHHH
Confidence 45799999999999888777665
No 91
>PRK06696 uridine kinase; Validated
Probab=25.20 E-value=1.7e+02 Score=27.06 Aligned_cols=50 Identities=22% Similarity=0.124 Sum_probs=34.9
Q ss_pred CCCeEEEEeCCcchhH--HHHHHHccc--CCeEEEEeCCCCCcchHHHHHHcCC
Q 017496 58 TQPSLLVFSGGTAFNG--VVEELKNIT--TRVAHVLPVSDDGGSTAEIVRVLGG 107 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~--LlrgLk~~~--~~iT~IVnv~DDGGSSG~LR~~~G~ 107 (370)
.+|.||.++|++|+-| +++.|.+.. ...++++-..||---+-..|..+|.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~ 73 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGR 73 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCC
Confidence 4689999999887754 556666543 3467777778887766666766664
No 92
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=25.17 E-value=60 Score=30.10 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=18.8
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcc
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
...++++++||+|..-++.=++++
T Consensus 124 ~~~~illIagG~GItP~~sil~~l 147 (220)
T cd06197 124 AERKMVWIAGGVGITPFLAMLRAI 147 (220)
T ss_pred CCceEEEEecccchhhHHHHHHHH
Confidence 346899999999998877766544
No 93
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=25.15 E-value=72 Score=29.76 Aligned_cols=28 Identities=7% Similarity=0.052 Sum_probs=23.9
Q ss_pred eEEEEeCCcchhHHHHHHHcccCCeEEE
Q 017496 61 SLLVFSGGTAFNGVVEELKNITTRVAHV 88 (370)
Q Consensus 61 kIVv~sGGTG~~~LlrgLk~~~~~iT~I 88 (370)
+|+++|||.+.-..+..|++...+++.|
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~li 29 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLII 29 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence 6999999999999999999887775544
No 94
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.67 E-value=2.3e+02 Score=21.21 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=37.6
Q ss_pred CeEEEEeCCcc--hhHHHHHHHcc--cCCeEEEEeCCCCCcchHHHHHHc
Q 017496 60 PSLLVFSGGTA--FNGVVEELKNI--TTRVAHVLPVSDDGGSTAEIVRVL 105 (370)
Q Consensus 60 pkIVv~sGGTG--~~~LlrgLk~~--~~~iT~IVnv~DDGGSSG~LR~~~ 105 (370)
+++++|+|=++ +.+++..+|+. ...+.|++|..-=.|+...|.+++
T Consensus 1 e~~ll~~g~~~~el~~~l~~~r~~~~~~~~kAvlT~tN~~Wt~~~L~~El 50 (58)
T PF12646_consen 1 EEFLLFSGFSGEELDKFLDALRKAGIPIPLKAVLTPTNINWTLKDLLEEL 50 (58)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHcCCCcceEEEECCCcccCcHHHHHHHH
Confidence 46889998766 78899999977 467999999999999988876653
No 95
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=24.65 E-value=78 Score=30.29 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=19.9
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcc
Q 017496 57 HTQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 57 ~~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
..+.++++++||||+.-++.=|+++
T Consensus 99 ~~~~~~llIAgGtGItP~~sil~~~ 123 (263)
T PRK08221 99 YKGKELIVVAGGTGVAPVKGLMRYF 123 (263)
T ss_pred cCCccEEEEcccccHHHHHHHHHHH
Confidence 3456899999999999887766654
No 96
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=24.55 E-value=1.3e+02 Score=32.90 Aligned_cols=34 Identities=12% Similarity=0.017 Sum_probs=29.2
Q ss_pred CCCCCCeEEEEeCCcchhHHHHHHHcccCCeEEE
Q 017496 55 PTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (370)
Q Consensus 55 ~~~~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~I 88 (370)
+|..+.+|+++|||-+.-..+.-|++..++++++
T Consensus 189 ~~~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~ 222 (652)
T PRK12814 189 APKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIF 222 (652)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 4557789999999999999999999988887755
No 97
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=24.17 E-value=71 Score=29.66 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=18.7
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcc
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
...++++++||||++-++.=++++
T Consensus 112 ~~~~llliagGtGiaP~~~~l~~~ 135 (247)
T cd06184 112 SDRPLVLISAGVGITPMLSMLEAL 135 (247)
T ss_pred CCCcEEEEeccccHhHHHHHHHHH
Confidence 445899999999999776655554
No 98
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=24.15 E-value=94 Score=34.46 Aligned_cols=35 Identities=14% Similarity=0.069 Sum_probs=29.1
Q ss_pred CCCCCCeEEEEeCCcchhHHHHHHHcccCCeEEEE
Q 017496 55 PTHTQPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (370)
Q Consensus 55 ~~~~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~IV 89 (370)
.|..+.+|+++|||.+.-..+.-|++..++++++=
T Consensus 427 ~~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e 461 (752)
T PRK12778 427 AEKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFE 461 (752)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEe
Confidence 35578899999999999999999998888766554
No 99
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=24.15 E-value=67 Score=31.62 Aligned_cols=24 Identities=13% Similarity=0.455 Sum_probs=19.3
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcc
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
...++++++||||+.-++.=|+++
T Consensus 203 ~~~~ivlIagGtGiaP~~s~l~~~ 226 (339)
T PRK07609 203 SDKPIVLLASGTGFAPIKSIVEHL 226 (339)
T ss_pred CCCCEEEEecCcChhHHHHHHHHH
Confidence 446899999999999887766654
No 100
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=23.96 E-value=61 Score=31.88 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=18.2
Q ss_pred eEEEEeCCcchhHHHHHHHcc
Q 017496 61 SLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 61 kIVv~sGGTG~~~LlrgLk~~ 81 (370)
+||++|||.|.-..++.|++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~ 21 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMK 21 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCc
Confidence 599999999999999988643
No 101
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=23.88 E-value=1.4e+02 Score=32.46 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=20.1
Q ss_pred CHHHHHHHHHhhcCCCCCCeEEeC
Q 017496 212 SLDAAIFLFSRVSDIPSESQVLPV 235 (370)
Q Consensus 212 sl~~Ai~~~s~~lgI~~~g~VlP~ 235 (370)
.+.+.+..+....+++ ..++||
T Consensus 224 ~~~~~~~~l~~~t~~p--~~~~pm 245 (557)
T COG3961 224 GLEKELKKLINATGFP--VATLPM 245 (557)
T ss_pred hhHHHHHHHHHhcCCC--eEEeec
Confidence 5899999999999998 899998
No 102
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=23.83 E-value=82 Score=29.79 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=18.8
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcc
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
...++|+++||||+.-++.=++++
T Consensus 97 ~~~~iv~IA~G~GitP~ls~l~~~ 120 (253)
T cd06221 97 KGKDLLLVAGGLGLAPLRSLINYI 120 (253)
T ss_pred cCCeEEEEccccchhHHHHHHHHH
Confidence 346899999999999877655543
No 103
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=23.70 E-value=87 Score=28.17 Aligned_cols=34 Identities=9% Similarity=0.185 Sum_probs=24.2
Q ss_pred CCeEEEEeCCcchhHHHHHHHccc---CCeEEEEeCC
Q 017496 59 QPSLLVFSGGTAFNGVVEELKNIT---TRVAHVLPVS 92 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk~~~---~~iT~IVnv~ 92 (370)
..++++++||||++-++.=++++. .+++.+...-
T Consensus 98 ~~~~v~ia~GtGiap~~~il~~~~~~~~~v~l~~~~r 134 (211)
T cd06185 98 ARRHLLIAGGIGITPILSMARALAARGADFELHYAGR 134 (211)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHhCCCCEEEEEEeC
Confidence 468999999999998887666542 4555555443
No 104
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=23.14 E-value=85 Score=30.53 Aligned_cols=25 Identities=8% Similarity=0.223 Sum_probs=20.5
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcc
Q 017496 57 HTQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 57 ~~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
....++++++||||+.-++.=|++.
T Consensus 153 ~~~~~lvlIAgGtGIaP~~s~l~~~ 177 (289)
T cd06201 153 KGAAPVILIGAGTGIAPLAGFIRAN 177 (289)
T ss_pred CCCCCEEEEecCcCHHHHHHHHHhh
Confidence 3456899999999999998877654
No 105
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=22.90 E-value=86 Score=30.48 Aligned_cols=30 Identities=30% Similarity=0.257 Sum_probs=23.3
Q ss_pred CeEEEEeCCcchhH-----HHHHHHcccCCeEEEE
Q 017496 60 PSLLVFSGGTAFNG-----VVEELKNITTRVAHVL 89 (370)
Q Consensus 60 pkIVv~sGGTG~~~-----LlrgLk~~~~~iT~IV 89 (370)
|||++++||+|... +++.|++..+++++|.
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~ 36 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLG 36 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEE
Confidence 78999999998765 6778887777776554
No 106
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=22.77 E-value=76 Score=29.08 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=20.8
Q ss_pred EEEEeCCcchh---HHHHHHHcccCCeEEEEe
Q 017496 62 LLVFSGGTAFN---GVVEELKNITTRVAHVLP 90 (370)
Q Consensus 62 IVv~sGGTG~~---~LlrgLk~~~~~iT~IVn 90 (370)
++.++|+.|.. .+++.|++...++.+|+|
T Consensus 4 ~lgvtGs~~a~~~~~ll~~L~~~g~~V~vi~T 35 (177)
T TIGR02113 4 LLAVTGSIAAYKAADLTSQLTKLGYDVTVLMT 35 (177)
T ss_pred EEEEcCHHHHHHHHHHHHHHHHCCCEEEEEEC
Confidence 57899999985 456666666667776663
No 107
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=22.70 E-value=77 Score=31.26 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=23.7
Q ss_pred CCCeEEEEeCCcchhHHHHHHHccc-----CCeEEEEeC
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNIT-----TRVAHVLPV 91 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~-----~~iT~IVnv 91 (370)
...++++|+||+|..-++.=++++. .+++.+...
T Consensus 110 ~~~~~vliAgG~GItP~~sml~~~~~~~~~~~v~l~y~~ 148 (332)
T PRK10684 110 AEDKYLLLAAGCGVTPIMSMRRWLLKNRPQADVQVIFNV 148 (332)
T ss_pred CCCcEEEEecCcCcchHHHHHHHHHhcCCCCCEEEEEeC
Confidence 4468999999999998887666542 345555443
No 108
>PRK10637 cysG siroheme synthase; Provisional
Probab=22.67 E-value=83 Score=32.91 Aligned_cols=68 Identities=12% Similarity=0.028 Sum_probs=45.1
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcccCCeEEEEeCCCCCc----chHHHHHHcCCCCCCcHHHHHHHhcCCCC
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSDDGG----STAEIVRVLGGPAVGDIRSRCLRLSDEST 125 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~IVnv~DDGG----SSG~LR~~~G~~a~GDIR~~L~aLA~~~~ 125 (370)
.+.+|+|+|||.-..+=++.|.+...++|+|-+..++.= ..|+++..-.-+-.+||...-+.++..++
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d 82 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDD 82 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCC
Confidence 578999999999877777888888899999977665420 11222222234456777766555555444
No 109
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=22.66 E-value=1e+02 Score=32.19 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=25.5
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcccCCeEEE
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~I 88 (370)
....|+|+|||-+....+..|.+...++..|
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~Vlll 68 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLI 68 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 4568999999999999999999876664444
No 110
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=22.64 E-value=59 Score=29.50 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=18.4
Q ss_pred CeEEEEeCCcchhHHHHHHHcc
Q 017496 60 PSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 60 pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
.++|+++||||+.-++.-++..
T Consensus 100 ~~~vlia~GtGiaP~~s~l~~~ 121 (218)
T cd06196 100 GPGVFIAGGAGITPFIAILRDL 121 (218)
T ss_pred CceEEEecCCCcChHHHHHHHH
Confidence 4799999999999887777655
No 111
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=22.52 E-value=1.1e+02 Score=29.02 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=23.4
Q ss_pred CeEEEEeCCcchhHHHHHHHccc-----CCeEEEEeC
Q 017496 60 PSLLVFSGGTAFNGVVEELKNIT-----TRVAHVLPV 91 (370)
Q Consensus 60 pkIVv~sGGTG~~~LlrgLk~~~-----~~iT~IVnv 91 (370)
.++++++||||+.-++.=+++.. .+++.+...
T Consensus 107 ~~~vlIagGtGItP~~s~l~~~~~~~~~~~v~l~~g~ 143 (248)
T PRK10926 107 ETLWMLATGTAIGPYLSILQEGKDLERFKNLVLVHAA 143 (248)
T ss_pred CeEEEEEeeeeHHHHHHHHHhhHhhCCCCcEEEEEeC
Confidence 68999999999998877666542 355555544
No 112
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=22.51 E-value=90 Score=29.92 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=16.7
Q ss_pred CCCeEEEEeCCcchhHHHHHHHccc
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNIT 82 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~ 82 (370)
...+|+++|||.|.. ++.+.++.
T Consensus 76 ~p~~VLiiGgG~G~~--~~ell~~~ 98 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGT--ARELLKHP 98 (246)
T ss_dssp ST-EEEEEESTTSHH--HHHHTTST
T ss_pred CcCceEEEcCCChhh--hhhhhhcC
Confidence 457999999999864 66666664
No 113
>PRK06475 salicylate hydroxylase; Provisional
Probab=22.15 E-value=83 Score=31.52 Aligned_cols=30 Identities=23% Similarity=0.047 Sum_probs=26.1
Q ss_pred CeEEEEeCCcchhHHHHHHHcccCCeEEEE
Q 017496 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (370)
Q Consensus 60 pkIVv~sGGTG~~~LlrgLk~~~~~iT~IV 89 (370)
-||+++|||-+.-.++..|++...+++++=
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E 32 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIE 32 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEe
Confidence 589999999999999999999877766554
No 114
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=22.13 E-value=77 Score=29.66 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.9
Q ss_pred CCHHHHHHHhcCCEEEEcCCCch
Q 017496 306 ANSAVLDQLNAVDCIIYAMGSLF 328 (370)
Q Consensus 306 ~~p~vl~AI~~ADlIVigPGSly 328 (370)
-.|++++.|.+||.|+++-||.+
T Consensus 73 ~~~~~~~~l~~ad~I~~~GG~~~ 95 (217)
T cd03145 73 NDPEVVARLRDADGIFFTGGDQL 95 (217)
T ss_pred CCHHHHHHHHhCCEEEEeCCcHH
Confidence 56899999999999999999974
No 115
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=22.09 E-value=78 Score=29.05 Aligned_cols=23 Identities=17% Similarity=0.481 Sum_probs=19.3
Q ss_pred CCeEEEEeCCcchhHHHHHHHcc
Q 017496 59 QPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
..++++++||||..-++.=++++
T Consensus 100 ~~~~lliagG~GiaP~~~~~~~~ 122 (227)
T cd06213 100 DAPILCIAGGSGLAPILAILEQA 122 (227)
T ss_pred CCcEEEEecccchhHHHHHHHHH
Confidence 46899999999999988777664
No 116
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=21.89 E-value=1.1e+02 Score=29.83 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=26.4
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcccCCeEEEE
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~IV 89 (370)
...+|||+|||.-....+-.|.+...++++|=
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie 34 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLE 34 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEe
Confidence 46799999999999999999998877555554
No 117
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=21.87 E-value=1.1e+02 Score=31.13 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=20.9
Q ss_pred CCCCCCCCCeEEEEeCCcchhHHHHHHHc
Q 017496 52 FSNPTHTQPSLLVFSGGTAFNGVVEELKN 80 (370)
Q Consensus 52 ~~~~~~~~pkIVv~sGGTG~~~LlrgLk~ 80 (370)
|.-++..+..|+++|||||++-+..=+++
T Consensus 223 F~l~~~~~~piImIa~GtGIAP~~s~l~~ 251 (384)
T cd06206 223 FRPPSDPSTPLIMIAAGTGLAPFRGFLQE 251 (384)
T ss_pred cCCCCCCCCCEEEEeCCCCcHHHHHHHHH
Confidence 44334445679999999999988765553
No 118
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=21.84 E-value=95 Score=31.20 Aligned_cols=33 Identities=6% Similarity=-0.049 Sum_probs=27.6
Q ss_pred CCeEEEEeCCcchhHHHHHHHcccCCeEEEEeC
Q 017496 59 QPSLLVFSGGTAFNGVVEELKNITTRVAHVLPV 91 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk~~~~~iT~IVnv 91 (370)
..+|+++|||-+...++..|++...++++|=.-
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~ 34 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQ 34 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECC
Confidence 368999999999999999999988777665543
No 119
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=21.81 E-value=86 Score=30.09 Aligned_cols=24 Identities=13% Similarity=0.372 Sum_probs=19.7
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcc
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
...++|+|+||||+.-++.=|+++
T Consensus 149 ~~~~~vlIAgGtGItP~~s~l~~~ 172 (283)
T cd06188 149 TDREMVFIGGGAGMAPLRSHIFHL 172 (283)
T ss_pred CCCcEEEEEecccHhHHHHHHHHH
Confidence 346899999999999988877654
No 120
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=21.79 E-value=74 Score=30.55 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCEEEEcCCCchhhh
Q 017496 308 SAVLDQLNAVDCIIYAMGSLFTSI 331 (370)
Q Consensus 308 p~vl~AI~~ADlIVigPGSlyTSI 331 (370)
.+++++|.++|+||+|-|+++...
T Consensus 56 ~~~~~~l~~~D~vI~gGG~l~~d~ 79 (298)
T TIGR03609 56 LAVLRALRRADVVIWGGGSLLQDV 79 (298)
T ss_pred HHHHHHHHHCCEEEECCcccccCC
Confidence 478999999999999999999643
No 121
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=21.79 E-value=1e+02 Score=31.79 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=22.3
Q ss_pred cCCCCCCCCCeEEEEeCCcchhHHHHHHHc
Q 017496 51 CFSNPTHTQPSLLVFSGGTAFNGVVEELKN 80 (370)
Q Consensus 51 ~~~~~~~~~pkIVv~sGGTG~~~LlrgLk~ 80 (370)
.|.-+...+..++.+|||||++-+..=|++
T Consensus 257 ~F~lp~~~~~piImIa~GtGIAP~~s~l~~ 286 (416)
T cd06204 257 NFRLPTKPSTPVIMIGPGTGVAPFRGFIQE 286 (416)
T ss_pred CCCCCCCCCCCEEEEeCCcchHHHHHHHHH
Confidence 454444446789999999999988776664
No 122
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=21.55 E-value=1e+02 Score=31.20 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=22.1
Q ss_pred cCCCCCCCCCeEEEEeCCcchhHHHHHHHc
Q 017496 51 CFSNPTHTQPSLLVFSGGTAFNGVVEELKN 80 (370)
Q Consensus 51 ~~~~~~~~~pkIVv~sGGTG~~~LlrgLk~ 80 (370)
.|.-++..+..++++|||||.+-+..=|++
T Consensus 222 ~F~lp~~~~~plImIa~GtGIAP~rs~l~~ 251 (382)
T cd06207 222 SFKLPKDPKKPIIMVGPGTGLAPFRAFLQE 251 (382)
T ss_pred cccCCCCCCCCEEEEcCCccHHHHHHHHHH
Confidence 354444445679999999999998776664
No 123
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=21.39 E-value=1.2e+02 Score=32.94 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=27.4
Q ss_pred CCCCCeEEEEeCCcchhHHHHHHHcccCCeEEE
Q 017496 56 THTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (370)
Q Consensus 56 ~~~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~I 88 (370)
+.++.||+++|||.+.-..+..|++..++++++
T Consensus 307 ~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~ 339 (639)
T PRK12809 307 VPRSEKVAVIGAGPAGLGCADILARAGVQVDVF 339 (639)
T ss_pred cCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEE
Confidence 346899999999999999999999887775544
No 124
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=21.37 E-value=1e+02 Score=32.72 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=34.5
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHcccCC-eEEEEeCCCC---CcchHHHHHHcCCCCCCcHHH
Q 017496 57 HTQPSLLVFSGGTAFNGVVEELKNITTR-VAHVLPVSDD---GGSTAEIVRVLGGPAVGDIRS 115 (370)
Q Consensus 57 ~~~pkIVv~sGGTG~~~LlrgLk~~~~~-iT~IVnv~DD---GGSSG~LR~~~G~~a~GDIR~ 115 (370)
.....|||+|||.=...++..|.+.... -.+|+--.|+ ++|+| +..-|..-+|+++.
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~~aS~~--~nnsg~iHag~~~~ 103 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVASHG--KNNSQTIHCGDIET 103 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhhcccCC--CCCCccccceeehh
Confidence 3457899999997777788899887532 2334444442 33433 33334455677663
No 125
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=21.29 E-value=84 Score=31.52 Aligned_cols=24 Identities=17% Similarity=0.373 Sum_probs=19.6
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcc
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
...++|+|+||||+.-++.=+++.
T Consensus 158 ~~~~lvlIAGGsGITP~lsmlr~~ 181 (325)
T PTZ00274 158 RWKHVGMIAGGTGFTPMLQIIRHS 181 (325)
T ss_pred CCceEEEEeCCcchhHHHHHHHHH
Confidence 346899999999999988877653
No 126
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=21.26 E-value=2.1e+02 Score=27.56 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=22.1
Q ss_pred CCeEEEEeCCcchhHHHHHHHcc---cCCeEEEEe
Q 017496 59 QPSLLVFSGGTAFNGVVEELKNI---TTRVAHVLP 90 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk~~---~~~iT~IVn 90 (370)
..++++++||+|+.-++.-++++ ..+++.+..
T Consensus 98 ~~~~llIaGGiGiaPl~~l~~~l~~~~~~v~l~~g 132 (281)
T PRK06222 98 FGTVVCVGGGVGIAPVYPIAKALKEAGNKVITIIG 132 (281)
T ss_pred CCeEEEEeCcCcHHHHHHHHHHHHHCCCeEEEEEe
Confidence 45899999999998876655543 345555543
No 127
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=21.07 E-value=1e+02 Score=31.91 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=31.3
Q ss_pred CCCeEEEEeCCcchhHHHHHHHc-ccCCeEEEEeCCCC
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKN-ITTRVAHVLPVSDD 94 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~-~~~~iT~IVnv~DD 94 (370)
+.-+|+|.|||+|.-.++.-+.+ +...-.+||-..||
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 56799999999999999888874 46778888988887
No 128
>PRK05713 hypothetical protein; Provisional
Probab=21.07 E-value=87 Score=30.67 Aligned_cols=24 Identities=17% Similarity=0.309 Sum_probs=19.3
Q ss_pred CCCeEEEEeCCcchhHHHHHHHcc
Q 017496 58 TQPSLLVFSGGTAFNGVVEELKNI 81 (370)
Q Consensus 58 ~~pkIVv~sGGTG~~~LlrgLk~~ 81 (370)
.+.++|+++||||+.-++.=++++
T Consensus 191 ~~~~~vlIAgGtGiaP~~s~l~~~ 214 (312)
T PRK05713 191 QERPLWLLAAGTGLAPLWGILREA 214 (312)
T ss_pred CCCcEEEEecCcChhHHHHHHHHH
Confidence 456899999999999887766654
No 129
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=20.97 E-value=90 Score=31.10 Aligned_cols=30 Identities=17% Similarity=0.115 Sum_probs=26.8
Q ss_pred CeEEEEeCCcchhHHHHHHHcccCCeEEEE
Q 017496 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVL 89 (370)
Q Consensus 60 pkIVv~sGGTG~~~LlrgLk~~~~~iT~IV 89 (370)
.+|+++|||-+...++..|.+...+++.|=
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E 33 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIE 33 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEc
Confidence 479999999999999999999888877766
No 130
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=20.80 E-value=1.1e+02 Score=30.61 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=22.5
Q ss_pred CCCCCeEEEEeCCcchhHHHHHHHccc
Q 017496 56 THTQPSLLVFSGGTAFNGVVEELKNIT 82 (370)
Q Consensus 56 ~~~~pkIVv~sGGTG~~~LlrgLk~~~ 82 (370)
|..-.+++.|+||||+.-+++=++++.
T Consensus 153 ~~~~~~l~miAgGtGItPmlqii~~il 179 (286)
T KOG0534|consen 153 PQKAKHLGMIAGGTGITPMLQLIRAIL 179 (286)
T ss_pred CCCcceEEEEecccchhhHHHHHHHHh
Confidence 334578999999999999999888773
No 131
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=20.44 E-value=1.4e+02 Score=27.78 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=24.8
Q ss_pred CCeEEEEeCCcchhHHHHHHHccc--CCeEEEEeC
Q 017496 59 QPSLLVFSGGTAFNGVVEELKNIT--TRVAHVLPV 91 (370)
Q Consensus 59 ~pkIVv~sGGTG~~~LlrgLk~~~--~~iT~IVnv 91 (370)
...+++++||||..-++.-++++. .+++.+..+
T Consensus 88 ~~~~vliAgGtGitP~~sil~~~~~~~~i~l~~~~ 122 (233)
T cd06220 88 GGKVLLIGGGIGIAPLAPLAERLKKAADVTVLLGA 122 (233)
T ss_pred CCeEEEEecCcChHHHHHHHHHHHhcCCEEEEEec
Confidence 568999999999998888777654 456655544
No 132
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=20.41 E-value=1e+02 Score=35.99 Aligned_cols=33 Identities=15% Similarity=0.008 Sum_probs=27.9
Q ss_pred CCCCCeEEEEeCCcchhHHHHHHHcccCCeEEE
Q 017496 56 THTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (370)
Q Consensus 56 ~~~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~I 88 (370)
+..+.+|+|+|||-|.-..+.-|++..+++|++
T Consensus 534 ~~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~ 566 (1012)
T TIGR03315 534 KSSAHKVAVIGAGPAGLSAGYFLARAGHPVTVF 566 (1012)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEE
Confidence 346789999999999999999999988876655
No 133
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=20.37 E-value=1.1e+02 Score=31.37 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=22.4
Q ss_pred cCCCCCCCCCeEEEEeCCcchhHHHHHHHc
Q 017496 51 CFSNPTHTQPSLLVFSGGTAFNGVVEELKN 80 (370)
Q Consensus 51 ~~~~~~~~~pkIVv~sGGTG~~~LlrgLk~ 80 (370)
.|.-++..+..|+++|||||++-+..=|++
T Consensus 238 ~F~lp~~~~~piImIa~GTGIAPfrsflq~ 267 (406)
T cd06202 238 SFHLPEDPSVPVIMVGPGTGIAPFRSFWQQ 267 (406)
T ss_pred ccCCCCCCCCCEEEEcCCcChHHHHHHHHH
Confidence 455444455689999999999988776654
No 134
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=20.35 E-value=1e+02 Score=31.58 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=18.6
Q ss_pred CCCCeEEEEeCCcchhHHHHHHHc
Q 017496 57 HTQPSLLVFSGGTAFNGVVEELKN 80 (370)
Q Consensus 57 ~~~pkIVv~sGGTG~~~LlrgLk~ 80 (370)
..+..+++++||||++-+..=|++
T Consensus 213 ~~~~~iImIAgGTGIAP~rs~L~~ 236 (367)
T PLN03115 213 DPNATIIMLATGTGIAPFRSFLWK 236 (367)
T ss_pred CCCCCEEEEeCCeeHHHHHHHHHH
Confidence 344579999999999997765654
No 135
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=20.19 E-value=1e+02 Score=36.05 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=28.1
Q ss_pred CCCCCeEEEEeCCcchhHHHHHHHcccCCeEEE
Q 017496 56 THTQPSLLVFSGGTAFNGVVEELKNITTRVAHV 88 (370)
Q Consensus 56 ~~~~pkIVv~sGGTG~~~LlrgLk~~~~~iT~I 88 (370)
+..+.||+|+|||-+.-..+..|++..++++++
T Consensus 536 ~~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~ 568 (1019)
T PRK09853 536 IGSRKKVAVIGAGPAGLAAAYFLARAGHPVTVF 568 (1019)
T ss_pred cCCCCcEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 457889999999999999999999988876654
No 136
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=20.03 E-value=1.3e+02 Score=28.97 Aligned_cols=33 Identities=21% Similarity=0.161 Sum_probs=26.2
Q ss_pred CeEEEEeCCcchhHHHHHHHcccCCeEEEEeCCC
Q 017496 60 PSLLVFSGGTAFNGVVEELKNITTRVAHVLPVSD 93 (370)
Q Consensus 60 pkIVv~sGGTG~~~LlrgLk~~~~~iT~IVnv~D 93 (370)
+||+++|+|++. .+++.|++....+.+|+.-.+
T Consensus 2 ~~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~d~~ 34 (326)
T PRK12767 2 MNILVTSAGRRV-QLVKALKKSLLKGRVIGADIS 34 (326)
T ss_pred ceEEEecCCccH-HHHHHHHHhccCCEEEEECCC
Confidence 689999999998 999999987545666665444
Done!