Query 017497
Match_columns 370
No_of_seqs 220 out of 860
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 09:05:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 4.3E-13 9.3E-18 98.8 4.7 54 191-244 5-60 (60)
2 smart00353 HLH helix loop heli 99.3 3.1E-12 6.6E-17 92.9 6.4 49 195-244 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.3 3.2E-12 6.9E-17 94.3 5.1 48 193-240 4-55 (55)
4 KOG1318 Helix loop helix trans 99.2 1E-11 2.2E-16 125.6 5.8 71 174-244 217-290 (411)
5 KOG1319 bHLHZip transcription 99.1 4.1E-11 8.8E-16 111.2 2.9 63 193-255 65-133 (229)
6 KOG4304 Transcriptional repres 98.4 1.7E-07 3.7E-12 89.9 2.6 54 192-245 34-94 (250)
7 KOG3561 Aryl-hydrocarbon recep 98.2 9.4E-07 2E-11 96.2 5.2 52 191-242 21-75 (803)
8 KOG2588 Predicted DNA-binding 98.2 4.9E-06 1.1E-10 91.5 9.8 66 188-253 274-339 (953)
9 KOG2483 Upstream transcription 97.7 7.4E-05 1.6E-09 71.5 6.0 55 191-245 60-116 (232)
10 KOG3960 Myogenic helix-loop-he 97.3 0.00043 9.4E-09 67.4 5.8 56 194-249 122-178 (284)
11 KOG0561 bHLH transcription fac 97.1 0.0002 4.3E-09 71.3 2.0 50 193-243 63-114 (373)
12 KOG4029 Transcription factor H 97.0 0.00064 1.4E-08 63.7 4.0 57 193-249 112-171 (228)
13 PLN03217 transcription factor 97.0 0.0014 3E-08 54.9 5.2 51 202-253 19-75 (93)
14 KOG3910 Helix loop helix trans 96.5 0.0031 6.8E-08 66.4 5.2 58 191-248 527-587 (632)
15 KOG4447 Transcription factor T 85.3 0.5 1.1E-05 43.7 1.8 48 193-241 81-130 (173)
16 KOG3558 Hypoxia-inducible fact 84.1 0.63 1.4E-05 51.2 2.2 43 195-238 51-97 (768)
17 KOG3560 Aryl-hydrocarbon recep 79.5 2.1 4.5E-05 46.5 4.0 40 198-238 33-76 (712)
18 KOG3559 Transcriptional regula 75.5 2.7 5.9E-05 44.3 3.4 60 196-256 7-70 (598)
19 KOG4395 Transcription factor A 74.8 12 0.00026 37.3 7.4 51 193-243 177-229 (285)
20 KOG3898 Transcription factor N 69.2 8 0.00017 37.7 4.8 47 194-241 76-125 (254)
21 PF13334 DUF4094: Domain of un 48.3 25 0.00055 29.7 3.8 26 229-254 68-93 (95)
22 KOG4447 Transcription factor T 40.5 25 0.00054 32.8 2.8 23 197-219 29-51 (173)
23 COG3074 Uncharacterized protei 29.7 65 0.0014 26.7 3.2 26 229-254 13-38 (79)
24 KOG3582 Mlx interactors and re 23.3 23 0.00051 39.7 -0.5 60 189-248 650-713 (856)
25 PRK15422 septal ring assembly 22.4 99 0.0021 25.9 3.1 26 228-253 12-37 (79)
26 TIGR00986 3a0801s05tom22 mitoc 21.7 58 0.0013 29.9 1.8 36 203-239 49-84 (145)
27 PF10465 Inhibitor_I24: PinA p 21.6 68 0.0015 29.1 2.1 19 225-243 121-139 (140)
28 KOG3582 Mlx interactors and re 20.7 28 0.00061 39.1 -0.5 56 191-249 788-847 (856)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.38 E-value=4.3e-13 Score=98.79 Aligned_cols=54 Identities=33% Similarity=0.572 Sum_probs=48.7
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhcCCCC--CcCCChhchHHHHHHHHHHHHHHHH
Q 017497 191 TDSHSLAERVRREKISERMKILQKLVPGC--DKVTGKAFMLDEIINYVQFLQNQVE 244 (370)
Q Consensus 191 ~~~HslaERrRRekINer~~~LrsLVPg~--~K~tdKAsIL~eAIdYIK~LQ~qVq 244 (370)
...|+..||+||++||+.|..|+.|||.+ ..+++|+.||+.||+||+.|+.+++
T Consensus 5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34699999999999999999999999999 2446999999999999999998863
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.33 E-value=3.1e-12 Score=92.89 Aligned_cols=49 Identities=37% Similarity=0.519 Sum_probs=44.6
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCC---CCcCCChhchHHHHHHHHHHHHHHHH
Q 017497 195 SLAERVRREKISERMKILQKLVPG---CDKVTGKAFMLDEIINYVQFLQNQVE 244 (370)
Q Consensus 195 slaERrRRekINer~~~LrsLVPg---~~K~tdKAsIL~eAIdYIK~LQ~qVq 244 (370)
+..||+||++||+.|..|+.|||. ..+ .+|++||+.||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k-~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKK-LSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999996 345 5999999999999999999886
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.30 E-value=3.2e-12 Score=94.33 Aligned_cols=48 Identities=35% Similarity=0.663 Sum_probs=44.5
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCC----CcCCChhchHHHHHHHHHHHH
Q 017497 193 SHSLAERVRREKISERMKILQKLVPGC----DKVTGKAFMLDEIINYVQFLQ 240 (370)
Q Consensus 193 ~HslaERrRRekINer~~~LrsLVPg~----~K~tdKAsIL~eAIdYIK~LQ 240 (370)
.|+..||+||++||+.|..|+.|||.+ ..+++|++||+.||+||++||
T Consensus 4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 599999999999999999999999997 344699999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.22 E-value=1e-11 Score=125.65 Aligned_cols=71 Identities=31% Similarity=0.534 Sum_probs=57.0
Q ss_pred CCCCCcchhhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCC---cCCChhchHHHHHHHHHHHHHHHH
Q 017497 174 KEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCD---KVTGKAFMLDEIINYVQFLQNQVE 244 (370)
Q Consensus 174 ~~~~~~~~~~RarRg~a~~~HslaERrRRekINer~~~LrsLVPg~~---K~tdKAsIL~eAIdYIK~LQ~qVq 244 (370)
+..++.....-.|.+++++.|+++|||||++||++|++|..|||.|. -+++|+.||..+.+||++||+..+
T Consensus 217 rt~~~~~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 217 RTHPKTDATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred CCCCCcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 33444444444555566788999999999999999999999999992 236899999999999999998554
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.09 E-value=4.1e-11 Score=111.24 Aligned_cols=63 Identities=32% Similarity=0.559 Sum_probs=55.9
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCCCc------CCChhchHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 017497 193 SHSLAERVRREKISERMKILQKLVPGCDK------VTGKAFMLDEIINYVQFLQNQVEFLSMKLASVNP 255 (370)
Q Consensus 193 ~HslaERrRRekINer~~~LrsLVPg~~K------~tdKAsIL~eAIdYIK~LQ~qVq~Le~~~a~~~P 255 (370)
.|.-+||+||+.|+..+..|+.|||.|.. ++.||.||..+|+||.+|..++.+.+.++++++-
T Consensus 65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k 133 (229)
T KOG1319|consen 65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRK 133 (229)
T ss_pred HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999998732 2479999999999999999999988888777653
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.37 E-value=1.7e-07 Score=89.88 Aligned_cols=54 Identities=28% Similarity=0.337 Sum_probs=46.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHhhcCCCCCc-------CCChhchHHHHHHHHHHHHHHHHH
Q 017497 192 DSHSLAERVRREKISERMKILQKLVPGCDK-------VTGKAFMLDEIINYVQFLQNQVEF 245 (370)
Q Consensus 192 ~~HslaERrRRekINer~~~LrsLVPg~~K-------~tdKAsIL~eAIdYIK~LQ~qVq~ 245 (370)
..|-+.|||||.|||+-|.+||+|||.+-+ +++||.||+-|++|++.|+...+.
T Consensus 34 ~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 34 VRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 358899999999999999999999996633 248999999999999999985443
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.25 E-value=9.4e-07 Score=96.15 Aligned_cols=52 Identities=19% Similarity=0.386 Sum_probs=47.9
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhcCCCCC---cCCChhchHHHHHHHHHHHHHH
Q 017497 191 TDSHSLAERVRREKISERMKILQKLVPGCD---KVTGKAFMLDEIINYVQFLQNQ 242 (370)
Q Consensus 191 ~~~HslaERrRRekINer~~~LrsLVPg~~---K~tdKAsIL~eAIdYIK~LQ~q 242 (370)
+.+|+.+|||||+++|..|.+|-+|||+|. .+.||.+||..||++||.++..
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 457999999999999999999999999996 4469999999999999999885
No 8
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.22 E-value=4.9e-06 Score=91.51 Aligned_cols=66 Identities=29% Similarity=0.481 Sum_probs=57.5
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCcCCChhchHHHHHHHHHHHHHHHHHHHhhhhcc
Q 017497 188 GQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQVEFLSMKLASV 253 (370)
Q Consensus 188 g~a~~~HslaERrRRekINer~~~LrsLVPg~~K~tdKAsIL~eAIdYIK~LQ~qVq~Le~~~a~~ 253 (370)
+..+.+|+++|||.|.-||+||.+||.+|||..-+..|..+|..||+||++|+..-+.+....+.+
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l 339 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASL 339 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhh
Confidence 466889999999999999999999999999986556999999999999999999777776554433
No 9
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.67 E-value=7.4e-05 Score=71.48 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=46.1
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhcCCCCCcCC-C-hhchHHHHHHHHHHHHHHHHH
Q 017497 191 TDSHSLAERVRREKISERMKILQKLVPGCDKVT-G-KAFMLDEIINYVQFLQNQVEF 245 (370)
Q Consensus 191 ~~~HslaERrRRekINer~~~LrsLVPg~~K~t-d-KAsIL~eAIdYIK~LQ~qVq~ 245 (370)
+..|+.-||+||..|.+.|..|+.+||.....+ . .++||+.|++||+.|+.+...
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~ 116 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSAT 116 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHH
Confidence 456999999999999999999999999763322 2 589999999999999885443
No 10
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.28 E-value=0.00043 Score=67.38 Aligned_cols=56 Identities=21% Similarity=0.289 Sum_probs=49.0
Q ss_pred ccHHHHHHHHHHHHHHHHHhh-cCCCCCcCCChhchHHHHHHHHHHHHHHHHHHHhh
Q 017497 194 HSLAERVRREKISERMKILQK-LVPGCDKVTGKAFMLDEIINYVQFLQNQVEFLSMK 249 (370)
Q Consensus 194 HslaERrRRekINer~~~Lrs-LVPg~~K~tdKAsIL~eAIdYIK~LQ~qVq~Le~~ 249 (370)
-.+.||||=+|+||-|.+|+. -+++.++..-|..||.-||+||..||.-++.+...
T Consensus 122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~ 178 (284)
T KOG3960|consen 122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQA 178 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 457899999999999999976 45777777799999999999999999999988753
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.14 E-value=0.0002 Score=71.28 Aligned_cols=50 Identities=26% Similarity=0.423 Sum_probs=43.9
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCC--CcCCChhchHHHHHHHHHHHHHHH
Q 017497 193 SHSLAERVRREKISERMKILQKLVPGC--DKVTGKAFMLDEIINYVQFLQNQV 243 (370)
Q Consensus 193 ~HslaERrRRekINer~~~LrsLVPg~--~K~tdKAsIL~eAIdYIK~LQ~qV 243 (370)
.-+..||||=.-||..|..||+|+|.- .|+ .||.||+.+.+||..|+.+.
T Consensus 63 IANsNERRRMQSINAGFqsLr~LlPr~eGEKL-SKAAILQQTa~yI~~Le~~K 114 (373)
T KOG0561|consen 63 IANSNERRRMQSINAGFQSLRALLPRKEGEKL-SKAAILQQTADYIHQLEGHK 114 (373)
T ss_pred hhcchHHHHHHhhhHHHHHHHHhcCcccchhh-HHHHHHHHHHHHHHHHHhcc
Confidence 345679999999999999999999964 665 99999999999999998753
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.01 E-value=0.00064 Score=63.65 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=49.4
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCC---CcCCChhchHHHHHHHHHHHHHHHHHHHhh
Q 017497 193 SHSLAERVRREKISERMKILQKLVPGC---DKVTGKAFMLDEIINYVQFLQNQVEFLSMK 249 (370)
Q Consensus 193 ~HslaERrRRekINer~~~LrsLVPg~---~K~tdKAsIL~eAIdYIK~LQ~qVq~Le~~ 249 (370)
.++..||.|=+-+|..|..||.+||.. .|+..|..+|..||.||++|++-++.-+..
T Consensus 112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 366779999999999999999999953 455699999999999999999988876643
No 13
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.98 E-value=0.0014 Score=54.87 Aligned_cols=51 Identities=33% Similarity=0.533 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhcCCCC------CcCCChhchHHHHHHHHHHHHHHHHHHHhhhhcc
Q 017497 202 REKISERMKILQKLVPGC------DKVTGKAFMLDEIINYVQFLQNQVEFLSMKLASV 253 (370)
Q Consensus 202 RekINer~~~LrsLVPg~------~K~tdKAsIL~eAIdYIK~LQ~qVq~Le~~~a~~ 253 (370)
-+.|+|-+..||.|+|.. .|. .-+-+|+|+-+||+.|+.+|..|..+++.+
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~-saskvLqEtC~YIrsLhrEvDdLSerLs~L 75 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKV-SAARVLQDTCNYIRNLHREVDDLSERLSEL 75 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999964 333 567799999999999999999999988765
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.55 E-value=0.0031 Score=66.36 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=48.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhcCCC---CCcCCChhchHHHHHHHHHHHHHHHHHHHh
Q 017497 191 TDSHSLAERVRREKISERMKILQKLVPG---CDKVTGKAFMLDEIINYVQFLQNQVEFLSM 248 (370)
Q Consensus 191 ~~~HslaERrRRekINer~~~LrsLVPg---~~K~tdKAsIL~eAIdYIK~LQ~qVq~Le~ 248 (370)
+.+.++.||-|=+.|||-|++|.+|.=- ..|.--|..||-.||.-|-.|++||++-.+
T Consensus 527 R~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERNL 587 (632)
T KOG3910|consen 527 RMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERNL 587 (632)
T ss_pred HhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHccC
Confidence 3468899999999999999999998642 234336899999999999999999998654
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=85.32 E-value=0.5 Score=43.68 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=39.9
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCC--CcCCChhchHHHHHHHHHHHHH
Q 017497 193 SHSLAERVRREKISERMKILQKLVPGC--DKVTGKAFMLDEIINYVQFLQN 241 (370)
Q Consensus 193 ~HslaERrRRekINer~~~LrsLVPg~--~K~tdKAsIL~eAIdYIK~LQ~ 241 (370)
.|++-||+|-.-+|+-|.+||.++|.. +|. .|.--|+-|-.||-+|=+
T Consensus 81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdkl-SkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 81 MANVRERQRTQSLNEAFAALRKIIPTLPSDKL-SKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhcCCCCcccc-ccccchhhcccCCchhhh
Confidence 499999999999999999999999965 554 677777777778777643
No 16
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=84.06 E-value=0.63 Score=51.24 Aligned_cols=43 Identities=33% Similarity=0.380 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhcCCCC----CcCCChhchHHHHHHHHHH
Q 017497 195 SLAERVRREKISERMKILQKLVPGC----DKVTGKAFMLDEIINYVQF 238 (370)
Q Consensus 195 slaERrRRekINer~~~LrsLVPg~----~K~tdKAsIL~eAIdYIK~ 238 (370)
.-+.|.||.|=|+.|.+|..+||-- .. .|||+|+.-||-|+|-
T Consensus 51 RdAARsRRsKEn~~FyeLa~~lPlp~aissh-LDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 51 RDAARSRRSKENEEFYELAKLLPLPAAISSH-LDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhcccchHHHHHHHHhCCCcchhhhh-hhhHHHHHHHHHHHHH
Confidence 3468999999999999999999943 33 4999999999999873
No 17
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=79.53 E-value=2.1 Score=46.49 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC----CcCCChhchHHHHHHHHHH
Q 017497 198 ERVRREKISERMKILQKLVPGC----DKVTGKAFMLDEIINYVQF 238 (370)
Q Consensus 198 ERrRRekINer~~~LrsLVPg~----~K~tdKAsIL~eAIdYIK~ 238 (370)
-+|-|+|+|..++.|.+|+|-. .|+ ||.+||.-+|-|++-
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKL-DkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKL-DKLSVLRLSVSYLRV 76 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhh-hhhhhhhhhHHHHHH
Confidence 3577999999999999999954 665 999999999999863
No 18
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=75.50 E-value=2.7 Score=44.34 Aligned_cols=60 Identities=25% Similarity=0.220 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC----CcCCChhchHHHHHHHHHHHHHHHHHHHhhhhccCCc
Q 017497 196 LAERVRREKISERMKILQKLVPGC----DKVTGKAFMLDEIINYVQFLQNQVEFLSMKLASVNPM 256 (370)
Q Consensus 196 laERrRRekINer~~~LrsLVPg~----~K~tdKAsIL~eAIdYIK~LQ~qVq~Le~~~a~~~P~ 256 (370)
-+.|.||++-|-.|.+|..|+|-. .+ .||++|+.-|--|||.-.-=-+-|-..|....+.
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQ-lDKasiiRLtTsYlKmr~vFPeGLGeawg~~S~a 70 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQ-LDKASIIRLTTSYLKMRNVFPEGLGEAWGASSRA 70 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhc-cchhhhhhHHHHHHHHHHhcccccchhccCCCcc
Confidence 357899999999999999999954 44 4999999999999986554444455555544443
No 19
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=74.85 E-value=12 Score=37.35 Aligned_cols=51 Identities=24% Similarity=0.241 Sum_probs=41.5
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCC--CcCCChhchHHHHHHHHHHHHHHH
Q 017497 193 SHSLAERVRREKISERMKILQKLVPGC--DKVTGKAFMLDEIINYVQFLQNQV 243 (370)
Q Consensus 193 ~HslaERrRRekINer~~~LrsLVPg~--~K~tdKAsIL~eAIdYIK~LQ~qV 243 (370)
+-+..||+|=..+|.-|+.|+..||.. .++..|-.-|+-|-.||--|-..+
T Consensus 177 aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 177 AANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred ccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 467789999999999999999999966 344478888999999998775544
No 20
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=69.19 E-value=8 Score=37.66 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=39.1
Q ss_pred ccHHHHHHHHHHHHHHHHHhhcCCCC---CcCCChhchHHHHHHHHHHHHH
Q 017497 194 HSLAERVRREKISERMKILQKLVPGC---DKVTGKAFMLDEIINYVQFLQN 241 (370)
Q Consensus 194 HslaERrRRekINer~~~LrsLVPg~---~K~tdKAsIL~eAIdYIK~LQ~ 241 (370)
-+.-||+|=-.+|+-|+.||.+||.. .|+ .|...|.-|=+||..|++
T Consensus 76 aNaRER~RMH~LNdAld~LReviP~~~~~~kl-skIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 76 ANARERTRMHDLNDALDALREVIPHGLHPPKL-SKIETLRLAANYIAALSE 125 (254)
T ss_pred ccchhhccccchhHHHHHhHhhccCcCCCCCC-CcchhHHhhhcchhhhcc
Confidence 45668888889999999999999943 554 788899999999988875
No 21
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=48.32 E-value=25 Score=29.67 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccC
Q 017497 229 LDEIINYVQFLQNQVEFLSMKLASVN 254 (370)
Q Consensus 229 L~eAIdYIK~LQ~qVq~Le~~~a~~~ 254 (370)
+.++-+=|+.|.+.|-.|||++++.+
T Consensus 68 V~kTh~aIq~LdKtIS~LEMELAaAR 93 (95)
T PF13334_consen 68 VSKTHEAIQSLDKTISSLEMELAAAR 93 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677778899999999999998764
No 22
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=40.49 E-value=25 Score=32.84 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC
Q 017497 197 AERVRREKISERMKILQKLVPGC 219 (370)
Q Consensus 197 aERrRRekINer~~~LrsLVPg~ 219 (370)
.||.|..++++.+.-|+.|+|+.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgs 51 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGS 51 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCC
Confidence 48899999999999999999987
No 23
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.68 E-value=65 Score=26.68 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccC
Q 017497 229 LDEIINYVQFLQNQVEFLSMKLASVN 254 (370)
Q Consensus 229 L~eAIdYIK~LQ~qVq~Le~~~a~~~ 254 (370)
++.||+-|.-||..|++|..+..++.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~ 38 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 67899999999999999998877553
No 24
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=23.26 E-value=23 Score=39.71 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=47.5
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCcC----CChhchHHHHHHHHHHHHHHHHHHHh
Q 017497 189 QATDSHSLAERVRREKISERMKILQKLVPGCDKV----TGKAFMLDEIINYVQFLQNQVEFLSM 248 (370)
Q Consensus 189 ~a~~~HslaERrRRekINer~~~LrsLVPg~~K~----tdKAsIL~eAIdYIK~LQ~qVq~Le~ 248 (370)
.+...|+-+|.+||..|.-.+..|-+++-+..++ +-++.-++..++||..++.+...+..
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~ 713 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQE 713 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccch
Confidence 3456799999999999999999999999876332 35666799999999988876555443
No 25
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=22.43 E-value=99 Score=25.88 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcc
Q 017497 228 MLDEIINYVQFLQNQVEFLSMKLASV 253 (370)
Q Consensus 228 IL~eAIdYIK~LQ~qVq~Le~~~a~~ 253 (370)
-++.||+-|.-||.+|++|.++...+
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L 37 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999876655
No 26
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=21.67 E-value=58 Score=29.92 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhcCCCCCcCCChhchHHHHHHHHHHH
Q 017497 203 EKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFL 239 (370)
Q Consensus 203 ekINer~~~LrsLVPg~~K~tdKAsIL~eAIdYIK~L 239 (370)
+-|-|||-+|++|||..... .-......+..++|.+
T Consensus 49 ETl~ERi~ALkDm~Pp~~R~-~i~~~~s~t~s~~ks~ 84 (145)
T TIGR00986 49 ETFTDRIYALKDIVPPTTRG-WIYHKYSTTTNFVKST 84 (145)
T ss_pred CcHHHHHHHHHhhCCHHHHH-HHHHHHHHHHHHHHHH
Confidence 46788999999999976552 2344445555555544
No 27
>PF10465 Inhibitor_I24: PinA peptidase inhibitor ; InterPro: IPR019506 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. PinA inhibits the endopeptidase La. It binds to the La homotetramer but does not interfere with the ATP binding site or the active site of La.
Probab=21.63 E-value=68 Score=29.07 Aligned_cols=19 Identities=16% Similarity=0.550 Sum_probs=17.1
Q ss_pred hhchHHHHHHHHHHHHHHH
Q 017497 225 KAFMLDEIINYVQFLQNQV 243 (370)
Q Consensus 225 KAsIL~eAIdYIK~LQ~qV 243 (370)
-..+.+.|-+||++|+.|+
T Consensus 121 EgnLMQAAAeYIewLE~ql 139 (140)
T PF10465_consen 121 EGNLMQAAAEYIEWLETQL 139 (140)
T ss_pred hhhHHHHHHHHHHHHHhhc
Confidence 5778999999999999886
No 28
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=20.73 E-value=28 Score=39.10 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=46.6
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhcCCCC----CcCCChhchHHHHHHHHHHHHHHHHHHHhh
Q 017497 191 TDSHSLAERVRREKISERMKILQKLVPGC----DKVTGKAFMLDEIINYVQFLQNQVEFLSMK 249 (370)
Q Consensus 191 ~~~HslaERrRRekINer~~~LrsLVPg~----~K~tdKAsIL~eAIdYIK~LQ~qVq~Le~~ 249 (370)
...|.-++||||-.+-+++..|-+|.|.. .+++.+++||. +.++.+|+.-+.+..+
T Consensus 788 ~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~ 847 (856)
T KOG3582|consen 788 SAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEK 847 (856)
T ss_pred ecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhh
Confidence 35788899999999999999999999954 55578999999 8888888877766553
Done!