Query 017497
Match_columns 370
No_of_seqs 220 out of 860
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 15:23:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 4.5E-17 1.5E-21 129.9 3.9 63 191-253 7-69 (82)
2 4ati_A MITF, microphthalmia-as 99.6 2.8E-16 9.7E-21 133.2 7.1 71 179-249 16-89 (118)
3 4h10_B Circadian locomoter out 99.5 2.2E-15 7.4E-20 118.6 3.8 57 191-247 9-65 (71)
4 1an4_A Protein (upstream stimu 99.5 2E-15 6.8E-20 114.8 3.3 56 189-244 4-64 (65)
5 1a0a_A BHLH, protein (phosphat 99.5 1.6E-15 5.4E-20 116.2 1.6 54 191-244 3-62 (63)
6 4h10_A ARYL hydrocarbon recept 99.5 4.3E-15 1.5E-19 117.1 0.8 52 189-241 8-63 (73)
7 1hlo_A Protein (transcription 99.5 4.9E-14 1.7E-18 111.3 5.6 61 192-253 14-76 (80)
8 1nkp_B MAX protein, MYC proto- 99.4 7E-14 2.4E-18 110.8 5.6 61 192-253 4-66 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 3.4E-13 1.1E-17 109.1 5.9 59 192-250 8-68 (88)
10 3u5v_A Protein MAX, transcript 99.4 2.2E-13 7.5E-18 108.0 4.2 58 191-248 6-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.2 1.7E-11 5.8E-16 97.8 6.7 59 193-252 4-65 (80)
12 4f3l_A Mclock, circadian locom 99.0 4E-10 1.4E-14 107.6 5.9 54 190-243 12-65 (361)
13 1mdy_A Protein (MYOD BHLH doma 99.0 4.2E-10 1.4E-14 87.6 4.6 52 193-244 15-67 (68)
14 2ql2_B Neurod1, neurogenic dif 98.9 1.6E-09 5.6E-14 82.2 5.4 52 193-244 5-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 7.2E-10 2.5E-14 107.3 3.1 52 190-242 13-68 (387)
16 4ath_A MITF, microphthalmia-as 98.6 8.5E-08 2.9E-12 77.7 6.0 48 201-248 3-53 (83)
17 2lfh_A DNA-binding protein inh 98.4 7.5E-08 2.6E-12 75.4 1.5 46 196-241 20-67 (68)
18 4aya_A DNA-binding protein inh 97.9 2.3E-05 7.7E-10 65.1 6.5 50 198-247 33-84 (97)
19 2wt7_A Proto-oncogene protein 40.4 48 0.0016 24.6 5.0 39 198-250 1-39 (63)
20 3muj_A Transcription factor CO 35.8 39 0.0013 29.5 4.5 36 204-239 95-133 (138)
21 2er8_A Regulatory protein Leu3 32.6 30 0.001 25.2 2.8 20 234-253 49-68 (72)
22 1hwt_C Protein (heme activator 27.4 34 0.0012 25.3 2.4 21 233-253 57-77 (81)
23 1p3q_Q VPS9P, vacuolar protein 26.6 65 0.0022 23.9 3.7 26 196-221 3-28 (54)
24 1zme_C Proline utilization tra 26.4 36 0.0012 24.5 2.3 20 234-253 44-63 (70)
25 1g70_B RSG-1.2 peptide; peptid 24.9 36 0.0012 21.8 1.7 11 194-204 9-19 (26)
26 2jee_A YIIU; FTSZ, septum, coi 24.7 53 0.0018 26.3 3.1 25 229-253 15-39 (81)
27 3coq_A Regulatory protein GAL4 23.8 46 0.0016 24.9 2.5 23 233-255 44-66 (89)
28 1pyi_A Protein (pyrimidine pat 22.5 86 0.003 23.8 3.9 22 233-254 47-68 (96)
29 1dh3_A Transcription factor CR 20.8 54 0.0018 23.9 2.3 20 234-253 22-41 (55)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.65 E-value=4.5e-17 Score=129.89 Aligned_cols=63 Identities=27% Similarity=0.426 Sum_probs=57.6
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhcCCCCCcCCChhchHHHHHHHHHHHHHHHHHHHhhhhcc
Q 017497 191 TDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQVEFLSMKLASV 253 (370)
Q Consensus 191 ~~~HslaERrRRekINer~~~LrsLVPg~~K~tdKAsIL~eAIdYIK~LQ~qVq~Le~~~a~~ 253 (370)
+..|+++||+||++||++|.+|++|||++..+++|++||++||+||++||.+++.|+.+...+
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L 69 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSL 69 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999995556999999999999999999999999877655
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.63 E-value=2.8e-16 Score=133.18 Aligned_cols=71 Identities=28% Similarity=0.382 Sum_probs=51.3
Q ss_pred cchhhccccCCCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCc---CCChhchHHHHHHHHHHHHHHHHHHHhh
Q 017497 179 DYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDK---VTGKAFMLDEIINYVQFLQNQVEFLSMK 249 (370)
Q Consensus 179 ~~~~~RarRg~a~~~HslaERrRRekINer~~~LrsLVPg~~K---~tdKAsIL~eAIdYIK~LQ~qVq~Le~~ 249 (370)
...+..+++++++.+|+++||+||++||++|.+|++|||+|.+ +++|++||+.||+||++||.+++.|+..
T Consensus 16 ~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 16 SEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888999999999999999999999999999853 3589999999999999999999999864
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.54 E-value=2.2e-15 Score=118.57 Aligned_cols=57 Identities=21% Similarity=0.379 Sum_probs=51.4
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhcCCCCCcCCChhchHHHHHHHHHHHHHHHHHHH
Q 017497 191 TDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQVEFLS 247 (370)
Q Consensus 191 ~~~HslaERrRRekINer~~~LrsLVPg~~K~tdKAsIL~eAIdYIK~LQ~qVq~Le 247 (370)
+.+|+++||+||++||++|.+|++|||++..++||++||+.||+||+.||.++.-|+
T Consensus 9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 357999999999999999999999999875445999999999999999999987665
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.54 E-value=2e-15 Score=114.79 Aligned_cols=56 Identities=27% Similarity=0.402 Sum_probs=49.8
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhhcCCCCCc-----CCChhchHHHHHHHHHHHHHHHH
Q 017497 189 QATDSHSLAERVRREKISERMKILQKLVPGCDK-----VTGKAFMLDEIINYVQFLQNQVE 244 (370)
Q Consensus 189 ~a~~~HslaERrRRekINer~~~LrsLVPg~~K-----~tdKAsIL~eAIdYIK~LQ~qVq 244 (370)
.....|+++||+||++||+.|..|++|||.|.. +++|++||+.||+||++||.+.+
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 455789999999999999999999999999862 35999999999999999998653
No 5
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.52 E-value=1.6e-15 Score=116.20 Aligned_cols=54 Identities=28% Similarity=0.429 Sum_probs=48.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhcCCCCCc------CCChhchHHHHHHHHHHHHHHHH
Q 017497 191 TDSHSLAERVRREKISERMKILQKLVPGCDK------VTGKAFMLDEIINYVQFLQNQVE 244 (370)
Q Consensus 191 ~~~HslaERrRRekINer~~~LrsLVPg~~K------~tdKAsIL~eAIdYIK~LQ~qVq 244 (370)
+.+|.++||+||++||..|..|+.|||.+.+ +.+||+||+.||+||+.||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 4679999999999999999999999997733 23699999999999999998763
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.48 E-value=4.3e-15 Score=117.08 Aligned_cols=52 Identities=31% Similarity=0.478 Sum_probs=46.9
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhhcCCCC----CcCCChhchHHHHHHHHHHHHH
Q 017497 189 QATDSHSLAERVRREKISERMKILQKLVPGC----DKVTGKAFMLDEIINYVQFLQN 241 (370)
Q Consensus 189 ~a~~~HslaERrRRekINer~~~LrsLVPg~----~K~tdKAsIL~eAIdYIK~LQ~ 241 (370)
+++.+|+++||+||++||+.|.+|+.|||.| .| +|||+||+.||+||+.|+.
T Consensus 8 ~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~K-ldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 8 NAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSC-CCHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHcccccccccc-ccHHHHHHHHHHHHHHHhc
Confidence 3446799999999999999999999999988 46 5999999999999999974
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=4.9e-14 Score=111.33 Aligned_cols=61 Identities=25% Similarity=0.486 Sum_probs=55.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHhhcCCCC--CcCCChhchHHHHHHHHHHHHHHHHHHHhhhhcc
Q 017497 192 DSHSLAERVRREKISERMKILQKLVPGC--DKVTGKAFMLDEIINYVQFLQNQVEFLSMKLASV 253 (370)
Q Consensus 192 ~~HslaERrRRekINer~~~LrsLVPg~--~K~tdKAsIL~eAIdYIK~LQ~qVq~Le~~~a~~ 253 (370)
..|+..||+||..||+.|..|++|||.+ .| ++|++||..||+||+.|+.+++.|+.++..+
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999987 46 5999999999999999999999999876543
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.44 E-value=7e-14 Score=110.82 Aligned_cols=61 Identities=25% Similarity=0.486 Sum_probs=54.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHhhcCCCC--CcCCChhchHHHHHHHHHHHHHHHHHHHhhhhcc
Q 017497 192 DSHSLAERVRREKISERMKILQKLVPGC--DKVTGKAFMLDEIINYVQFLQNQVEFLSMKLASV 253 (370)
Q Consensus 192 ~~HslaERrRRekINer~~~LrsLVPg~--~K~tdKAsIL~eAIdYIK~LQ~qVq~Le~~~a~~ 253 (370)
..|+..||+||.+||+.|..|+++||.+ .| ++|++||..||+||++|+.+++.|+.++..+
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999986 56 5999999999999999999999888765443
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.38 E-value=3.4e-13 Score=109.12 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=52.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHhhcCCCCC--cCCChhchHHHHHHHHHHHHHHHHHHHhhh
Q 017497 192 DSHSLAERVRREKISERMKILQKLVPGCD--KVTGKAFMLDEIINYVQFLQNQVEFLSMKL 250 (370)
Q Consensus 192 ~~HslaERrRRekINer~~~LrsLVPg~~--K~tdKAsIL~eAIdYIK~LQ~qVq~Le~~~ 250 (370)
..|+..||+||..||+.|..|+++||.+. .+.+|++||..||+||++|+.+.+.|....
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~ 68 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999999999999863 235999999999999999999988876543
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.38 E-value=2.2e-13 Score=108.02 Aligned_cols=58 Identities=26% Similarity=0.360 Sum_probs=49.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhhcCCCC---CcCCChhchHHHHHHHHHHHHHHHHHHHh
Q 017497 191 TDSHSLAERVRREKISERMKILQKLVPGC---DKVTGKAFMLDEIINYVQFLQNQVEFLSM 248 (370)
Q Consensus 191 ~~~HslaERrRRekINer~~~LrsLVPg~---~K~tdKAsIL~eAIdYIK~LQ~qVq~Le~ 248 (370)
+..|+..||+||+.||+.|..|+.+||.+ .|...|+.||..||+||++||++|++++.
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34699999999999999999999999953 44336889999999999999999998874
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.21 E-value=1.7e-11 Score=97.77 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=52.7
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCC---CcCCChhchHHHHHHHHHHHHHHHHHHHhhhhc
Q 017497 193 SHSLAERVRREKISERMKILQKLVPGC---DKVTGKAFMLDEIINYVQFLQNQVEFLSMKLAS 252 (370)
Q Consensus 193 ~HslaERrRRekINer~~~LrsLVPg~---~K~tdKAsIL~eAIdYIK~LQ~qVq~Le~~~a~ 252 (370)
.|+..||+||..||+.|..|+++||.+ .| ..|+.||..||+||+.|+.+.+.|..+...
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k-~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~ 65 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSR-HTTLSLLTKAKLHIKKLEDSDRKAVHQIDQ 65 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999965 45 489999999999999999999988866543
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.97 E-value=4e-10 Score=107.62 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=42.0
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhhcCCCCCcCCChhchHHHHHHHHHHHHHHH
Q 017497 190 ATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQV 243 (370)
Q Consensus 190 a~~~HslaERrRRekINer~~~LrsLVPg~~K~tdKAsIL~eAIdYIK~LQ~qV 243 (370)
++.+|+++||+||++||+.|.+|++|||....++||++||..||+|||.|+...
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 345799999999999999999999999954433599999999999999998653
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.96 E-value=4.2e-10 Score=87.56 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=46.6
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCC-CcCCChhchHHHHHHHHHHHHHHHH
Q 017497 193 SHSLAERVRREKISERMKILQKLVPGC-DKVTGKAFMLDEIINYVQFLQNQVE 244 (370)
Q Consensus 193 ~HslaERrRRekINer~~~LrsLVPg~-~K~tdKAsIL~eAIdYIK~LQ~qVq 244 (370)
.|+..||+|+..||+.|..|+.+||.. +++..|..||..||+||.+|++.++
T Consensus 15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 15 AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 599999999999999999999999965 3445999999999999999998653
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.89 E-value=1.6e-09 Score=82.24 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=46.6
Q ss_pred cccHHHHHHHHHHHHHHHHHhhcCCCC--CcCCChhchHHHHHHHHHHHHHHHH
Q 017497 193 SHSLAERVRREKISERMKILQKLVPGC--DKVTGKAFMLDEIINYVQFLQNQVE 244 (370)
Q Consensus 193 ~HslaERrRRekINer~~~LrsLVPg~--~K~tdKAsIL~eAIdYIK~LQ~qVq 244 (370)
.|+..||+|+..||+.|..|+.+||.. +++..|..+|..||+||+.|++.++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 488999999999999999999999965 4446999999999999999998764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.86 E-value=7.2e-10 Score=107.30 Aligned_cols=52 Identities=29% Similarity=0.420 Sum_probs=46.6
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhhcCCC----CCcCCChhchHHHHHHHHHHHHHH
Q 017497 190 ATDSHSLAERVRREKISERMKILQKLVPG----CDKVTGKAFMLDEIINYVQFLQNQ 242 (370)
Q Consensus 190 a~~~HslaERrRRekINer~~~LrsLVPg----~~K~tdKAsIL~eAIdYIK~LQ~q 242 (370)
++.+|+.+||+||+|||+.|.+|+.|||. ..|+ ||++||..||+|||.|+..
T Consensus 13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred hcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence 35679999999999999999999999994 4665 9999999999999999853
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.55 E-value=8.5e-08 Score=77.66 Aligned_cols=48 Identities=25% Similarity=0.365 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCc---CCChhchHHHHHHHHHHHHHHHHHHHh
Q 017497 201 RREKISERMKILQKLVPGCDK---VTGKAFMLDEIINYVQFLQNQVEFLSM 248 (370)
Q Consensus 201 RRekINer~~~LrsLVPg~~K---~tdKAsIL~eAIdYIK~LQ~qVq~Le~ 248 (370)
-|..||++|.+|..|||.+.. +++|++||..||+||++||+.++.+..
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999997632 359999999999999999987766654
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.38 E-value=7.5e-08 Score=75.42 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC--CcCCChhchHHHHHHHHHHHHH
Q 017497 196 LAERVRREKISERMKILQKLVPGC--DKVTGKAFMLDEIINYVQFLQN 241 (370)
Q Consensus 196 laERrRRekINer~~~LrsLVPg~--~K~tdKAsIL~eAIdYIK~LQ~ 241 (370)
.-||+|+..||+-|..||.+||.. +++..|..+|..||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 348999999999999999999965 4445999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.87 E-value=2.3e-05 Score=65.12 Aligned_cols=50 Identities=22% Similarity=0.263 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC--CcCCChhchHHHHHHHHHHHHHHHHHHH
Q 017497 198 ERVRREKISERMKILQKLVPGC--DKVTGKAFMLDEIINYVQFLQNQVEFLS 247 (370)
Q Consensus 198 ERrRRekINer~~~LrsLVPg~--~K~tdKAsIL~eAIdYIK~LQ~qVq~Le 247 (370)
||.|=..||+-|..||.+||.. +++..|..+|.-||+||+.|+..++.-.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~ 84 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL 84 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5788889999999999999965 4456999999999999999999886543
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=40.36 E-value=48 Score=24.55 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcCCChhchHHHHHHHHHHHHHHHHHHHhhh
Q 017497 198 ERVRREKISERMKILQKLVPGCDKVTGKAFMLDEIINYVQFLQNQVEFLSMKL 250 (370)
Q Consensus 198 ERrRRekINer~~~LrsLVPg~~K~tdKAsIL~eAIdYIK~LQ~qVq~Le~~~ 250 (370)
||++|.+...++.+.+. - +.-.+|+..|+.+|+.|+...
T Consensus 1 Ekr~rrrerNR~AA~rc-----R---------~rKk~~~~~Le~~v~~L~~~n 39 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-----R---------NRRRELTDTLQAETDQLEDEK 39 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-----H---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-----H---------HHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666665553 1 122345555555555555443
No 20
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=35.81 E-value=39 Score=29.51 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhcCCC---CCcCCChhchHHHHHHHHHHH
Q 017497 204 KISERMKILQKLVPG---CDKVTGKAFMLDEIINYVQFL 239 (370)
Q Consensus 204 kINer~~~LrsLVPg---~~K~tdKAsIL~eAIdYIK~L 239 (370)
-|.-.|..|+.+||. .....-|..||..|-|+++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 478899999999984 333458999999999998876
No 21
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=32.61 E-value=30 Score=25.18 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 017497 234 NYVQFLQNQVEFLSMKLASV 253 (370)
Q Consensus 234 dYIK~LQ~qVq~Le~~~a~~ 253 (370)
.||..|+.+|+.|+..+..+
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999887765
No 22
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=27.36 E-value=34 Score=25.30 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcc
Q 017497 233 INYVQFLQNQVEFLSMKLASV 253 (370)
Q Consensus 233 IdYIK~LQ~qVq~Le~~~a~~ 253 (370)
-.||..|+.+|+.||..+..+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999876655
No 23
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=26.64 E-value=65 Score=23.92 Aligned_cols=26 Identities=19% Similarity=0.483 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCc
Q 017497 196 LAERVRREKISERMKILQKLVPGCDK 221 (370)
Q Consensus 196 laERrRRekINer~~~LrsLVPg~~K 221 (370)
.++|-+|...++-+..|+.+-|..++
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 57889999999999999999998766
No 24
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=26.43 E-value=36 Score=24.48 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 017497 234 NYVQFLQNQVEFLSMKLASV 253 (370)
Q Consensus 234 dYIK~LQ~qVq~Le~~~a~~ 253 (370)
.||..|+.+|+.|+..+..+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l 63 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRL 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46667777777776655544
No 25
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=24.93 E-value=36 Score=21.75 Aligned_cols=11 Identities=55% Similarity=0.450 Sum_probs=7.7
Q ss_pred ccHHHHHHHHH
Q 017497 194 HSLAERVRREK 204 (370)
Q Consensus 194 HslaERrRRek 204 (370)
-+-+||+||..
T Consensus 9 psgaerrrrra 19 (26)
T 1g70_B 9 PSGAERRRRRA 19 (26)
T ss_pred CchHHHHHHHH
Confidence 35678888854
No 26
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.67 E-value=53 Score=26.28 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc
Q 017497 229 LDEIINYVQFLQNQVEFLSMKLASV 253 (370)
Q Consensus 229 L~eAIdYIK~LQ~qVq~Le~~~a~~ 253 (370)
++.||+-|.-||..|++|..+...+
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999877654
No 27
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=23.82 E-value=46 Score=24.86 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhhhhccCC
Q 017497 233 INYVQFLQNQVEFLSMKLASVNP 255 (370)
Q Consensus 233 IdYIK~LQ~qVq~Le~~~a~~~P 255 (370)
..||..|+.+|+.||..+..+.|
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 35999999999999998887766
No 28
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=22.46 E-value=86 Score=23.80 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhhhccC
Q 017497 233 INYVQFLQNQVEFLSMKLASVN 254 (370)
Q Consensus 233 IdYIK~LQ~qVq~Le~~~a~~~ 254 (370)
-.||+.|+.+|+.||..+..+.
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3599999999999998877653
No 29
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.84 E-value=54 Score=23.92 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhhhhcc
Q 017497 234 NYVQFLQNQVEFLSMKLASV 253 (370)
Q Consensus 234 dYIK~LQ~qVq~Le~~~a~~ 253 (370)
.||..|+.+|..|+.++..+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L 41 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTL 41 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68888888888888766544
Done!