Query 017498
Match_columns 370
No_of_seqs 132 out of 785
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 15:24:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.0 5.2E-09 1.8E-13 102.4 13.7 203 50-327 132-338 (451)
2 3o7q_A L-fucose-proton symport 99.0 2.1E-08 7.3E-13 97.7 18.0 205 48-331 128-346 (438)
3 2gfp_A EMRD, multidrug resista 98.7 8.8E-08 3E-12 91.8 12.6 166 48-309 99-264 (375)
4 4aps_A DI-OR tripeptide H+ sym 98.2 1.1E-05 3.7E-10 80.0 11.8 80 47-141 118-199 (491)
5 4gc0_A D-xylose-proton symport 97.8 5E-05 1.7E-09 75.0 8.8 47 49-95 138-184 (491)
6 2cfq_A Lactose permease; trans 96.7 0.0022 7.4E-08 62.6 6.9 43 286-328 265-307 (417)
7 4aps_A DI-OR tripeptide H+ sym 96.0 0.016 5.3E-07 57.0 8.4 96 225-330 9-105 (491)
8 2xut_A Proton/peptide symporte 95.3 0.031 1.1E-06 55.4 7.4 90 226-330 9-105 (524)
9 2gfp_A EMRD, multidrug resista 94.7 0.12 4E-06 48.7 9.3 84 232-331 3-86 (375)
10 1pw4_A Glycerol-3-phosphate tr 93.9 0.18 6E-06 48.4 8.9 84 229-329 28-111 (451)
11 3o7q_A L-fucose-proton symport 92.0 0.62 2.1E-05 44.4 9.6 45 284-328 65-109 (438)
12 2xut_A Proton/peptide symporte 91.9 0.33 1.1E-05 47.9 7.7 74 49-137 121-197 (524)
13 2cfq_A Lactose permease; trans 91.1 0.34 1.2E-05 46.7 6.7 79 229-322 7-85 (417)
14 4gc0_A D-xylose-proton symport 81.6 1 3.4E-05 43.8 3.9 80 54-142 386-466 (491)
15 2hac_A T-cell surface glycopro 25.8 23 0.00078 21.9 0.9 25 118-142 3-27 (33)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.96 E-value=5.2e-09 Score=102.35 Aligned_cols=203 Identities=12% Similarity=0.133 Sum_probs=126.2
Q ss_pred cccccchhhHHHHhcCCCchhhhhHHHHHHHHHHhhhhhhhhcccccccccccccccchhhhcccchhHHHHHHHHHHHH
Q 017498 50 ANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLT 129 (370)
Q Consensus 50 s~n~~q~P~RAli~D~~p~~qq~~a~a~~s~~~glG~ilGy~~G~i~~~~~~~~~~~~~~~~~~~~q~k~~f~i~ai~l~ 129 (370)
+......+..+++.|..|+++|.+++++.+...++|.++|..+++.. . ...+ +.|..|.+.+++.+
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-~-~~~g------------~w~~~f~~~~~~~~ 197 (451)
T 1pw4_A 132 FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG-M-AWFN------------DWHAALYMPAFCAI 197 (451)
T ss_dssp HHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH-H-HHTC------------CSTTCTHHHHHHHH
T ss_pred HhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH-H-HHhc------------cHHHHHHHHHHHHH
Confidence 34456678889999999999999999999999999999999888541 1 1111 13455666666666
Q ss_pred HHhhheeeEeeccCCCCCCCCCCCCCCCCCCCcchhccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCCCC
Q 017498 130 LCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNGSF 209 (370)
Q Consensus 130 itv~~T~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (370)
+..++..+..||.|......+. ++ .. .. + + . +..+++ ++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~-~~--~~-~~---------~--------------~----~--------~~~~~~-~~- 236 (451)
T 1pw4_A 198 LVALFAFAMMRDTPQSCGLPPI-EE--YK-ND---------Y--------------P----D--------DYNEKA-EQ- 236 (451)
T ss_dssp HHHHHHHHHCCCSSTTTCCCSC-TT--TC-CC------------------------------------------------
T ss_pred HHHHHHHhhccCCHhhcCCCCh-hh--hc-cc---------c--------------c----c--------cchhhh-hc-
Confidence 5555566667886543211110 00 00 00 0 0 0 000000 00
Q ss_pred CCCchhhHHHH-HHHhccCCHHHHHHHHHHHHHHHHhhhhhhhccccccceeecCCCCCCchhhHhHHhHHHHHHHHHHH
Q 017498 210 NDGPGAVLVNL-LTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLL 288 (370)
Q Consensus 210 ~~~~~~~~~~l-~~si~~mP~~~~~lc~vqffsW~g~f~f~~y~T~~vge~vf~gdp~a~s~~~~~Y~~Gvr~Gs~gl~~ 288 (370)
....++. ++.+. -.+.++.+++..++.++++..+..|.+.|+.+ .++.++. .. .+-+..
T Consensus 237 ----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~-------------~~-~~~~~~ 296 (451)
T 1pw4_A 237 ----ELTAKQIFMQYVL-PNKLLWYIAIANVFVYLLRYGILDWSPTYLKE-VKHFALD-------------KS-SWAYFL 296 (451)
T ss_dssp ------CCTHHHHHHTS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-BSCCCHH-------------HH-HHHHHH
T ss_pred ----ccccccchHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHH-------------HH-HHHHHH
Confidence 0111222 22222 25788999999999999999999999988876 4443321 11 233556
Q ss_pred HHHHHHHHHHHHHHHHhhh--CchHHHHHHHHHHH-HHHHHH
Q 017498 289 NSVVLGVSSFLIEPMCRWI--GSRLVWAISNFIVF-ACMATT 327 (370)
Q Consensus 289 ~siv~~l~s~il~~l~~~i--g~r~v~~~s~~i~a-~~~~~~ 327 (370)
+.+...+.+++..++.+|+ |+|++..++.++.+ ++++..
T Consensus 297 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (451)
T 1pw4_A 297 YEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 338 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 6677777888889999999 99999888877766 555443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.96 E-value=2.1e-08 Score=97.72 Aligned_cols=205 Identities=11% Similarity=0.038 Sum_probs=125.7
Q ss_pred hhcccccchhhHHHHhcCCCchhhhhHHHHHHHHHHhhhhhhhhcccccccccccccccch------------hhhcccc
Q 017498 48 DLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSR------------ACCAACG 115 (370)
Q Consensus 48 D~s~n~~q~P~RAli~D~~p~~qq~~a~a~~s~~~glG~ilGy~~G~i~~~~~~~~~~~~~------------~~~~~~~ 115 (370)
-++....+.+..+++.|..|+++|.+++++.+...++|.++|..+++.. .....+...+. .......
T Consensus 128 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (438)
T 3o7q_A 128 AAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL-ILSNVPHQSQDVLDKMSPEQLSAYKHSLVL 206 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH-HHTSSCCCCHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccccccccccCCcchhhhhhhhhhh
Confidence 3455567778999999999999999999999999999999999988752 10111100000 0000001
Q ss_pred hhHHHHHHHHHHHHHHh-hheeeEeeccCCCCCCCCCCCCCCCCCCCcchhccccccCCCCCCCCCCCCCccCCcccchh
Q 017498 116 NLKAAFLVAVVFLTLCA-LVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDAN 194 (370)
Q Consensus 116 q~k~~f~i~ai~l~itv-~~T~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 194 (370)
+.++.|.+.+++.++.. .+.....||.+.+.++
T Consensus 207 ~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---------------------------------------------- 240 (438)
T 3o7q_A 207 SVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS---------------------------------------------- 240 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCC----------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCcccccccc----------------------------------------------
Confidence 15777755444433333 3222223332110000
Q ss_pred hhhhcccccccCCCCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhhhhcccc-ccceeecCCCCCCchhhH
Q 017498 195 LKHISKKAEDTNGSFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDW-MGREVYHGDPKGNDHEVK 273 (370)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~si~~mP~~~~~lc~vqffsW~g~f~f~~y~T~~-vge~vf~gdp~a~s~~~~ 273 (370)
++ +. ......+++ +.+ .|.++.+++..++.+.+...+..|...| ..+ .++-++.
T Consensus 241 --------~~--~~--~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~------- 295 (438)
T 3o7q_A 241 --------DA--KQ--GSFSASLSR----LAR-IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEE-IPGMTAG------- 295 (438)
T ss_dssp --------CS--ST--TSHHHHHHH----HTT-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTCCHH-------
T ss_pred --------cc--cc--cchhhhHHH----HHh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCcchh-------
Confidence 00 00 111122333 333 3567888889999999888888888888 544 5443321
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHh
Q 017498 274 FYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTAIIS 331 (370)
Q Consensus 274 ~Y~~Gvr~Gs~gl~~~siv~~l~s~il~~l~~~ig~r~v~~~s~~i~a~~~~~~~~~~ 331 (370)
.. .+-..++.+...+..++..++.+|+|+|++..++.++.+++++...+.+
T Consensus 296 ------~~-~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (438)
T 3o7q_A 296 ------FA-ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG 346 (438)
T ss_dssp ------HH-HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ------HH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC
Confidence 12 2334456677777788889999999999999999999888887766554
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.71 E-value=8.8e-08 Score=91.82 Aligned_cols=166 Identities=14% Similarity=0.070 Sum_probs=113.5
Q ss_pred hhcccccchhhHHHHhcCCCchhhhhHHHHHHHHHHhhhhhhhhcccccccccccccccchhhhcccchhHHHHHHHHHH
Q 017498 48 DLANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVF 127 (370)
Q Consensus 48 D~s~n~~q~P~RAli~D~~p~~qq~~a~a~~s~~~glG~ilGy~~G~i~~~~~~~~~~~~~~~~~~~~q~k~~f~i~ai~ 127 (370)
-++....+....+++.|..|+++|.+++++.+...++|.++|..+++.. .+. ...|..|.+.+++
T Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l--~~~-------------~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 99 GMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL--DTM-------------WNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS--SCH-------------HHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHh-------------ccHHHHHHHHHHH
Confidence 4555667778899999999999999999999999999999999888651 111 1357788888777
Q ss_pred HHHHhhheeeEeeccCCCCCCCCCCCCCCCCCCCcchhccccccCCCCCCCCCCCCCccCCcccchhhhhhcccccccCC
Q 017498 128 LTLCALVTIYFADEVPLTVNQPNHLTDSAPLLDDPQRNAISKSKHDMPAAPNANGNKVESGHESDANLKHISKKAEDTNG 207 (370)
Q Consensus 128 l~itv~~T~~~v~E~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (370)
.++..++..+..||.+..+++++ +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------------~ 187 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPVDAPRT--------------------------------------------------------R 187 (375)
T ss_dssp HHHHHCCCCCSSCCCSTTTCCCC--------------------------------------------------------C
T ss_pred HHHHHHHHHHHCcccCCCCcccc--------------------------------------------------------c
Confidence 77777766777787642211100 0
Q ss_pred CCCCCchhhHHHHHHHhccCCHHHHHHHHHHHHHHHHhhhhhhhccccccceeecCCCCCCchhhHhHHhHHHHHHHHHH
Q 017498 208 SFNDGPGAVLVNLLTSLRHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLL 287 (370)
Q Consensus 208 ~~~~~~~~~~~~l~~si~~mP~~~~~lc~vqffsW~g~f~f~~y~T~~vge~vf~gdp~a~s~~~~~Y~~Gvr~Gs~gl~ 287 (370)
....++++++. |.++.+++..++.+.++..+..|.+.|..+ .++.++ ...| +-..
T Consensus 188 -----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-------------~~~g-~~~~ 242 (375)
T 2gfp_A 188 -----LLTSYKTLFGN-----SGFNCYLLMLIGGLAGIAAFEACSGVLMGA-VLGLSS-------------MTVS-ILFI 242 (375)
T ss_dssp -----TTTCSTHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHCSCSSHH-HHHHHH-------------HHHH-HHHH
T ss_pred -----HHHHHHHHhcC-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCH-------------HHHH-HHHH
Confidence 01123344443 578889999999999999999998888765 333211 0222 2344
Q ss_pred HHHHHHHHHHHHHHHHHhhhCc
Q 017498 288 LNSVVLGVSSFLIEPMCRWIGS 309 (370)
Q Consensus 288 ~~siv~~l~s~il~~l~~~ig~ 309 (370)
.+++...+.+++.+++.+|+++
T Consensus 243 ~~~~~~~~~~~~~~~l~~r~~~ 264 (375)
T 2gfp_A 243 LPIPAAFFGAWFAGRPNKRFST 264 (375)
T ss_dssp THHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666777777888888766
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.15 E-value=1.1e-05 Score=79.98 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=56.9
Q ss_pred HhhcccccchhhHHHHhcCCCchh--hhhHHHHHHHHHHhhhhhhhhcccccccccccccccchhhhcccchhHHHHHHH
Q 017498 47 LDLANNTVQGPARALLADLSGPDQ--RNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVA 124 (370)
Q Consensus 47 lD~s~n~~q~P~RAli~D~~p~~q--q~~a~a~~s~~~glG~ilGy~~G~i~~~~~~~~~~~~~~~~~~~~q~k~~f~i~ 124 (370)
.-++......+..+++.|..|+++ |..++++.+...++|.++|..+++.. .+. ...+..|.+.
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l--~~~-------------~g~~~~f~~~ 182 (491)
T 4aps_A 118 IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAA--QEA-------------AGYHVAFSLA 182 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-------------SCHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHH--Hhh-------------hhHHHHHHHH
Confidence 345555667788999999999988 66677778899999999998887651 111 1357788887
Q ss_pred HHHHHHHhhheeeEeec
Q 017498 125 VVFLTLCALVTIYFADE 141 (370)
Q Consensus 125 ai~l~itv~~T~~~v~E 141 (370)
+++.+++.++..+..++
T Consensus 183 ~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 183 AIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 77777666655444444
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.79 E-value=5e-05 Score=75.04 Aligned_cols=47 Identities=11% Similarity=0.071 Sum_probs=39.6
Q ss_pred hcccccchhhHHHHhcCCCchhhhhHHHHHHHHHHhhhhhhhhcccc
Q 017498 49 LANNTVQGPARALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGAS 95 (370)
Q Consensus 49 ~s~n~~q~P~RAli~D~~p~~qq~~a~a~~s~~~glG~ilGy~~G~i 95 (370)
++........-+|+.|..|+++|.+..++.+....+|.++++.++..
T Consensus 138 ~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 184 (491)
T 4gc0_A 138 IGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYF 184 (491)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchh
Confidence 33444556677899999999999999999999999999999988754
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=96.73 E-value=0.0022 Score=62.55 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Q 017498 286 LLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTA 328 (370)
Q Consensus 286 l~~~siv~~l~s~il~~l~~~ig~r~v~~~s~~i~a~~~~~~~ 328 (370)
..++.+...+..++..++.+|+|+|++...+.++.+++++...
T Consensus 265 ~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~ 307 (417)
T 2cfq_A 265 TTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS 307 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566677889999999999998888888777765443
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=96.01 E-value=0.016 Score=57.00 Aligned_cols=96 Identities=11% Similarity=0.058 Sum_probs=71.1
Q ss_pred ccCCHHHHHHHHHHHHHHHHhhhhhhhccccccceeecCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017498 225 RHLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMC 304 (370)
Q Consensus 225 ~~mP~~~~~lc~vqffsW~g~f~f~~y~T~~vge~vf~gdp~a~s~~~~~Y~~Gvr~Gs~gl~~~siv~~l~s~il~~l~ 304 (370)
++.|+.++.++.+.++.-++++.+..+...|+.+....+|-+.+ . . .. .+....+.+...+.+++..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~-----~---~~-~~~~~~~~~~~~~~~~~~g~l~ 78 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHIT-R-----A---TA-ASIMAIYASMVYLSGTIGGFVA 78 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSC-H-----H---HH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCC-H-----H---HH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999998888888888764311111100 0 0 12 3445677788888888999999
Q ss_pred hh-hCchHHHHHHHHHHHHHHHHHHHH
Q 017498 305 RW-IGSRLVWAISNFIVFACMATTAII 330 (370)
Q Consensus 305 ~~-ig~r~v~~~s~~i~a~~~~~~~~~ 330 (370)
+| +|+|++..++.++.+++.+.+.+.
T Consensus 79 dr~~g~r~~~~~~~~~~~~~~~~~~~~ 105 (491)
T 4aps_A 79 DRIIGARPAVFWGGVLIMLGHIVLALP 105 (491)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHh
Confidence 99 899999999999999988777654
No 8
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=95.26 E-value=0.031 Score=55.41 Aligned_cols=90 Identities=11% Similarity=-0.043 Sum_probs=67.0
Q ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhccccccceeec------CCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 017498 226 HLPPAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYH------GDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFL 299 (370)
Q Consensus 226 ~mP~~~~~lc~vqffsW~g~f~f~~y~T~~vge~vf~------gdp~a~s~~~~~Y~~Gvr~Gs~gl~~~siv~~l~s~i 299 (370)
+.|+.++.+++.+++..++++.+..+...|+.+ .++ -++. .. .+-+..+.+...+.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~s~~-------------~~-g~~~~~~~~~~~~~~~~ 73 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMT-ALLLSIPEELRGA-------------VA-KDVFHSFVIGVYFFPLL 73 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHH-SCSSCCSSSTTTT-------------TH-HHHHHHHHHHHHHTHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccccccccCHH-------------HH-HHHHHHHHHHHHHHHHH
Confidence 356788899999999999999888888888766 344 2221 11 23455677777778888
Q ss_pred HHHHHhhh-CchHHHHHHHHHHHHHHHHHHHH
Q 017498 300 IEPMCRWI-GSRLVWAISNFIVFACMATTAII 330 (370)
Q Consensus 300 l~~l~~~i-g~r~v~~~s~~i~a~~~~~~~~~ 330 (370)
..++.+|+ |+|++..++.++.+++.+.+.+.
T Consensus 74 ~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~ 105 (524)
T 2xut_A 74 GGWIADRFFGKYNTILWLSLIYCVGHAFLAIF 105 (524)
T ss_dssp HHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh
Confidence 89999999 99999999999999888776654
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=94.69 E-value=0.12 Score=48.71 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccccceeecCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCchH
Q 017498 232 HVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIGSRL 311 (370)
Q Consensus 232 ~~lc~vqffsW~g~f~f~~y~T~~vge~vf~gdp~a~s~~~~~Y~~Gvr~Gs~gl~~~siv~~l~s~il~~l~~~ig~r~ 311 (370)
..+++.+++.++++..+..+.+.+..+ ++.++. .. .+....+.+...+.+++..++.+|+|+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~-------------~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~ 66 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARD--LNVREG-------------AV-QSVMGAYLLTYGVSQLFYGPISDRVGRRP 66 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT--SSSTTH-------------HH-HHHHHHHHHHHHHHHTTHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH--cCCCHH-------------HH-HHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 457788888888888887777766544 443331 12 24456677778888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 017498 312 VWAISNFIVFACMATTAIIS 331 (370)
Q Consensus 312 v~~~s~~i~a~~~~~~~~~~ 331 (370)
+...+.++.+++.+.+.+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~ 86 (375)
T 2gfp_A 67 VILVGMSIFMLATLVAVTTS 86 (375)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998887765
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=93.92 E-value=0.18 Score=48.39 Aligned_cols=84 Identities=17% Similarity=0.115 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccceeecCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 017498 229 PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (370)
Q Consensus 229 ~~~~~lc~vqffsW~g~f~f~~y~T~~vge~vf~gdp~a~s~~~~~Y~~Gvr~Gs~gl~~~siv~~l~s~il~~l~~~ig 308 (370)
+.+..+++.+++.++.+..+..+...+..+ + .++. + . .+....+.+...+.+++..++.+|+|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~s~~---------~----~-g~~~~~~~~~~~~~~~~~G~l~dr~g 90 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ--G-FSRG---------D----L-GFALSGISIAYGFSKFIMGSVSDRSN 90 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS--T-TCSS---------C----H-HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h-ccHh---------H----H-HHHHHHHHHHHHHHHHhHHHHHHhcC
Confidence 346677778888888877777777766655 2 3332 1 1 23455677778888888999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 017498 309 SRLVWAISNFIVFACMATTAI 329 (370)
Q Consensus 309 ~r~v~~~s~~i~a~~~~~~~~ 329 (370)
+|++..++.++.+++.+.+.+
T Consensus 91 ~r~~l~~~~~~~~~~~~~~~~ 111 (451)
T 1pw4_A 91 PRVFLPAGLILAAAVMLFMGF 111 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988887
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=92.00 E-value=0.62 Score=44.35 Aligned_cols=45 Identities=4% Similarity=-0.234 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHH
Q 017498 284 FGLLLNSVVLGVSSFLIEPMCRWIGSRLVWAISNFIVFACMATTA 328 (370)
Q Consensus 284 ~gl~~~siv~~l~s~il~~l~~~ig~r~v~~~s~~i~a~~~~~~~ 328 (370)
+-...+.+...+.+++..++.+|+|+|++..++.++.+++.+.+.
T Consensus 65 ~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 109 (438)
T 3o7q_A 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFW 109 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 445567777788888899999999999999999999999988873
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=91.90 E-value=0.33 Score=47.89 Aligned_cols=74 Identities=11% Similarity=0.089 Sum_probs=51.1
Q ss_pred hcccccchhhHHHHhcCCCchhhhhHHHH---HHHHHHhhhhhhhhcccccccccccccccchhhhcccchhHHHHHHHH
Q 017498 49 LANNTVQGPARALLADLSGPDQRNSANAI---FCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAV 125 (370)
Q Consensus 49 ~s~n~~q~P~RAli~D~~p~~qq~~a~a~---~s~~~glG~ilGy~~G~i~~~~~~~~~~~~~~~~~~~~q~k~~f~i~a 125 (370)
++......+..+++.|..|+++|+++.+. .....++|+++|..+++.. .+. ...+..|.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l--~~~-------------~g~~~~f~~~~ 185 (524)
T 2xut_A 121 LGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLL--LKN-------------FGAAVAFGIPG 185 (524)
T ss_dssp HHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHH--HHT-------------SCHHHHHHHHH
T ss_pred HhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcc-------------ccHHHHHHHHH
Confidence 34445567778999999999999765555 8888899999998887641 110 13577788777
Q ss_pred HHHHHHhhheee
Q 017498 126 VFLTLCALVTIY 137 (370)
Q Consensus 126 i~l~itv~~T~~ 137 (370)
++.+++.++..+
T Consensus 186 ~~~~~~~~~~~~ 197 (524)
T 2xut_A 186 VLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH
Confidence 766666554433
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=91.14 E-value=0.34 Score=46.71 Aligned_cols=79 Identities=13% Similarity=0.092 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccceeecCCCCCCchhhHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 017498 229 PAMHVVLIVMALTWLSWFPFFLFDTDWMGREVYHGDPKGNDHEVKFYDQGVREGAFGLLLNSVVLGVSSFLIEPMCRWIG 308 (370)
Q Consensus 229 ~~~~~lc~vqffsW~g~f~f~~y~T~~vge~vf~gdp~a~s~~~~~Y~~Gvr~Gs~gl~~~siv~~l~s~il~~l~~~ig 308 (370)
|..+.++...++.++++..++.|...|+.+ .++-++. +.| +-+..+.+...+.+.+..++.+|+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~s~~---------~~g-----~~~~~~~~~~~i~~~~~G~lsDr~G 71 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHD-INHISKS---------DTG-----IIFAAISLFSLLFQPLFGLLSDKLG 71 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHT-TTCCCTT---------TSH-----HHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCHH---------HHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567888888899999988888888888765 2443432 112 3355667777788888999999999
Q ss_pred chHHHHHHHHHHHH
Q 017498 309 SRLVWAISNFIVFA 322 (370)
Q Consensus 309 ~r~v~~~s~~i~a~ 322 (370)
+|+++.++.++.++
T Consensus 72 rr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 72 LRKYLLWIITGMLV 85 (417)
T ss_dssp TCCHHHHHHHHTTS
T ss_pred chHHHHHHHHHHHH
Confidence 99999998887655
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=81.63 E-value=1 Score=43.78 Aligned_cols=80 Identities=20% Similarity=0.123 Sum_probs=50.7
Q ss_pred cchhh-HHHHhcCCCchhhhhHHHHHHHHHHhhhhhhhhcccccccccccccccchhhhcccchhHHHHHHHHHHHHHHh
Q 017498 54 VQGPA-RALLADLSGPDQRNSANAIFCSWMAVGNILGFSAGASGSWHRWFPFLTSRACCAACGNLKAAFLVAVVFLTLCA 132 (370)
Q Consensus 54 ~q~P~-RAli~D~~p~~qq~~a~a~~s~~~glG~ilGy~~G~i~~~~~~~~~~~~~~~~~~~~q~k~~f~i~ai~l~itv 132 (370)
..+|. -.+..|+.|.+.|.+|.++.+....+|++++-.+-....-... ... .......|.+-+++.+++.
T Consensus 386 ~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~---~~~------~~~~~~~~~i~~~~~~~~~ 456 (491)
T 4gc0_A 386 SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW---LVA------HFHNGFSYWIYGCMGVLAA 456 (491)
T ss_dssp TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH---HHH------HHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHh------hhhhhHHHHHHHHHHHHHH
Confidence 33444 4789999999999999999999888888876433211000000 000 0112345666666677777
Q ss_pred hheeeEeecc
Q 017498 133 LVTIYFADEV 142 (370)
Q Consensus 133 ~~T~~~v~E~ 142 (370)
+++.++.||.
T Consensus 457 i~~~~~~PET 466 (491)
T 4gc0_A 457 LFMWKFVPET 466 (491)
T ss_dssp HHHHHHCCCC
T ss_pred HHHHheecCC
Confidence 7778889996
No 15
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=25.79 E-value=23 Score=21.92 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhhheeeEeecc
Q 017498 118 KAAFLVAVVFLTLCALVTIYFADEV 142 (370)
Q Consensus 118 k~~f~i~ai~l~itv~~T~~~v~E~ 142 (370)
+.++++-.++++-++++|.++.||+
T Consensus 3 ~lCYiLDgiL~iYgii~T~Ly~R~K 27 (33)
T 2hac_A 3 KLCYLLDGILFIYGVILTALFLRVK 27 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEeehHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999997
Done!