BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017499
(370 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
Length = 447
Score = 435 bits (1119), Expect = e-122, Method: Compositional matrix adjust.
Identities = 202/353 (57%), Positives = 274/353 (77%), Gaps = 2/353 (0%)
Query: 1 MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIF 60
+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY GK++KVP+T+ EAL S LMG+F
Sbjct: 76 LIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMF 135
Query: 61 EKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDD 120
EKRR RKF ++V ++DENDPKT EG+D + R++ K+ L + IDF GHALAL+R D
Sbjct: 136 EKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTD 195
Query: 121 RYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKP 180
YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP
Sbjct: 196 DYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKP 254
Query: 181 ECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 240
+ E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND
Sbjct: 255 VDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTND 313
Query: 241 SHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLL 300
++S Q+I+PQ Q+ R+SD+Y+ SY+HNVA +GK+IA ST ET P+ E++P ++LL
Sbjct: 314 ANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELL 373
Query: 301 GPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 353
P+D+ F I D YEP+++ S F S SYDATTHFE+T D+ ++Y + G
Sbjct: 374 EPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 426
>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide
Dissociation Inhibitor (Gdi) In Complex With A
Geranylgeranyl (Gg) Peptide
Length = 449
Score = 434 bits (1117), Expect = e-122, Method: Compositional matrix adjust.
Identities = 202/353 (57%), Positives = 274/353 (77%), Gaps = 2/353 (0%)
Query: 1 MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIF 60
+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY GK++KVP+T+ EAL S LMG+F
Sbjct: 78 LIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMF 137
Query: 61 EKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDD 120
EKRR RKF ++V ++DENDPKT EG+D + R++ K+ L + IDF GHALAL+R D
Sbjct: 138 EKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTD 197
Query: 121 RYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKP 180
YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP
Sbjct: 198 DYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKP 256
Query: 181 ECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 240
+ E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND
Sbjct: 257 VDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTND 315
Query: 241 SHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLL 300
++S Q+I+PQ Q+ R+SD+Y+ SY+HNVA +GK+IA ST ET P+ E++P ++LL
Sbjct: 316 ANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELL 375
Query: 301 GPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 353
P+D+ F I D YEP+++ S F S SYDATTHFE+T D+ ++Y + G
Sbjct: 376 EPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 428
>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform
Length = 433
Score = 433 bits (1113), Expect = e-122, Method: Compositional matrix adjust.
Identities = 202/353 (57%), Positives = 273/353 (77%), Gaps = 2/353 (0%)
Query: 1 MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIF 60
+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY GK++KVP+T+ EAL S LMG+F
Sbjct: 78 LIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMF 137
Query: 61 EKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDD 120
EKRR RKF ++V ++DENDPKT EG+D + R++ K+ L + IDF GHALAL+R D
Sbjct: 138 EKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTD 197
Query: 121 RYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKP 180
YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FARLSA+YGGTYMLNKP
Sbjct: 198 DYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKP 256
Query: 181 ECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 240
+ E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V R I I+SHPI NTND
Sbjct: 257 VDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTND 315
Query: 241 SHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLL 300
++S Q+I+PQ Q+ R+SD+Y+ SY+HNVA +GK+IA ST ET P+ E++P + LL
Sbjct: 316 ANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALGLL 375
Query: 301 GPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 353
P+D+ F I D YEP+++ S F S SYDATTHFE+T D+ ++Y + G
Sbjct: 376 EPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAG 428
>pdb|3CPH|G Chain G, Crystal Structure Of Sec4 In Complex With Rab-Gdi
pdb|3CPH|H Chain H, Crystal Structure Of Sec4 In Complex With Rab-Gdi
pdb|3CPI|G Chain G, Crystal Structure Of Yeast Rab-Gdi
pdb|3CPI|H Chain H, Crystal Structure Of Yeast Rab-Gdi
pdb|3CPJ|G Chain G, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 451
Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust.
Identities = 182/355 (51%), Positives = 259/355 (72%), Gaps = 3/355 (0%)
Query: 1 MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIF 60
+IPKF++ANG L +LIHTDVT+Y+ FK V GS+V+ +GK++KVPA ++EA+ SPLMGIF
Sbjct: 84 LIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMGIF 143
Query: 61 EKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDD 120
EKRR +KF ++ Y E+D TH+G+DL + T E+ K+GL ++T +FIGHA+AL +D
Sbjct: 144 EKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTND 203
Query: 121 RYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKP 180
YL +PA + +R+ LY +S+AR+ G SPY+YP+YGLGELPQ FARLSA+YGGTYML+ P
Sbjct: 204 DYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTP 262
Query: 181 ECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVG-RVARAIAIMSHPIPNT 238
+V + ++ GK GV ++ T K V+ DP+Y P K + G RV RAI I++HP+PNT
Sbjct: 263 IDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKSTGQRVIRAICILNHPVPNT 322
Query: 239 NDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGID 298
+++ S+Q+I+PQ QLGR+SD+Y+ S +HNV KG ++A +ST ETD P EL+P
Sbjct: 323 SNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAIISTIIETDKPHIELEPAFK 382
Query: 299 LLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 353
LLGP++E F I + +EP + S DN ++S SYDA++HFES DV ++Y +TG
Sbjct: 383 LLGPIEEKFMGIAELFEPREDGSKDNIYLSRSYDASSHFESMTDDVKDIYFRVTG 437
>pdb|1UKV|G Chain G, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|2BCG|G Chain G, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 453
Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust.
Identities = 182/355 (51%), Positives = 259/355 (72%), Gaps = 3/355 (0%)
Query: 1 MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIF 60
+IPKF++ANG L +LIHTDVT+Y+ FK V GS+V+ +GK++KVPA ++EA+ SPLMGIF
Sbjct: 86 LIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMGIF 145
Query: 61 EKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDD 120
EKRR +KF ++ Y E+D TH+G+DL + T E+ K+GL ++T +FIGHA+AL +D
Sbjct: 146 EKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTND 205
Query: 121 RYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKP 180
YL +PA + +R+ LY +S+AR+ G SPY+YP+YGLGELPQ FARLSA+YGGTYML+ P
Sbjct: 206 DYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTP 264
Query: 181 ECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVG-RVARAIAIMSHPIPNT 238
+V + ++ GK GV ++ T K V+ DP+Y P K + G RV RAI I++HP+PNT
Sbjct: 265 IDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKSTGQRVIRAICILNHPVPNT 324
Query: 239 NDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGID 298
+++ S+Q+I+PQ QLGR+SD+Y+ S +HNV KG ++A +ST ETD P EL+P
Sbjct: 325 SNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAIISTIIETDKPHIELEPAFK 384
Query: 299 LLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITG 353
LLGP++E F I + +EP + S DN ++S SYDA++HFES DV ++Y +TG
Sbjct: 385 LLGPIEEKFMGIAELFEPREDGSKDNIYLSRSYDASSHFESMTDDVKDIYFRVTG 439
>pdb|3P1W|A Chain A, Crystal Structure Of Rab Gdi From Plasmodium Falciparum,
Pfl2060c
Length = 475
Score = 348 bits (894), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 170/367 (46%), Positives = 248/367 (67%), Gaps = 14/367 (3%)
Query: 1 MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGK---------VHKVPATDMEA 51
+IPKFI+ G LV++L T VT YL + V+GS+VY K +HKVPATDMEA
Sbjct: 91 LIPKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEA 150
Query: 52 LKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIG 111
L SPL+ + EK R + F+ YV ++D N T + +D ++T E+ + L TIDF+G
Sbjct: 151 LVSPLLSLMEKNRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIYKHFNLCQLTIDFLG 210
Query: 112 HALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVY 171
HA+AL+ +D YL +PA T++R+KLY +SI+ F G SP+IYPLYGLG +P+ F+R+ A+
Sbjct: 211 HAVALYLNDDYLKQPAYLTLERIKLYMQSISAF-GKSPFIYPLYGLGGIPEGFSRMCAIN 269
Query: 172 GGTYMLNKPECKVEFDEEGKVVGV-TSEGETAKCKKVVCDPSY---LPNKVRKVGRVARA 227
GGT+MLNK FD++ KV G+ +S+GE A C KV+CDPSY L NK++K+G+V R
Sbjct: 270 GGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYVMHLKNKIKKIGQVIRC 329
Query: 228 IAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETD 287
I I+S+PIP TN ++S Q+I+PQ QL R+SD+Y+ S+ H V KGK+IA VS ET+
Sbjct: 330 ICILSNPIPETNQTNSCQIIIPQNQLNRKSDIYINLVSFQHGVTLKGKYIAIVSATVETN 389
Query: 288 HPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDATTHFESTVTDVLNM 347
+P E++ ++LLG ++E F I D Y ++ DN F+++SYDAT+HFE+ D+L +
Sbjct: 390 NPIKEIEKPLELLGTIEEKFVKISDLYVSTSKKPADNIFVTSSYDATSHFETATNDLLQI 449
Query: 348 YTMITGK 354
+ + G+
Sbjct: 450 WENLWGQ 456
>pdb|1VG0|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG9|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|C Chain C, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|E Chain E, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|G Chain G, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 650
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 143/289 (49%), Gaps = 18/289 (6%)
Query: 1 MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIF 60
++ K + + G L+ +LI ++V++Y FK + + +G V +VP + + S + +
Sbjct: 228 LVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMV 287
Query: 61 EKRRARKFFIYVQDYDE--NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHR 118
EKR KF + +Y+E ++ + +EG T E + L N F+ H++A+
Sbjct: 288 EKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLHSIAMTS 342
Query: 119 DDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLN 178
+ +D +K K + + + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L
Sbjct: 343 ETTSC---TVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLR 398
Query: 179 KP-ECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLP-NKVRKVG--RVARAIAIMSH 233
+C V E K V + G+ K + + SYL N +V +++RA+ I
Sbjct: 399 HSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQYRQISRAVLITDG 458
Query: 234 PIPNTNDSHSVQVI-LPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVS 281
+ T+ V ++ +P ++ G + + CS S KG ++ ++
Sbjct: 459 SVLRTDADQQVSILTVPAEEPGSFAVRVIELCS-STMTCMKGTYLVHLT 506
>pdb|1LTX|R Chain R, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 650
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 143/289 (49%), Gaps = 18/289 (6%)
Query: 1 MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIF 60
++ K + + G L+ +LI ++V++Y FK + + +G V +VP + + S + +
Sbjct: 228 LVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMV 287
Query: 61 EKRRARKFFIYVQDYDE--NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHR 118
EKR KF + +Y+E ++ + +EG T E + L N F+ H++A+
Sbjct: 288 EKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLHSIAMTS 342
Query: 119 DDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLN 178
+ +D +K K + + + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L
Sbjct: 343 ETTSC---TVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLR 398
Query: 179 KP-ECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLP-NKVRKVG--RVARAIAIMSH 233
+C V E K V + G+ K + + SYL N +V +++RA+ I
Sbjct: 399 HSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQYRQISRAVLITDG 458
Query: 234 PIPNTNDSHSVQVI-LPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVS 281
+ T+ V ++ +P ++ G + + CS S KG ++ ++
Sbjct: 459 SVLKTDADQQVSILTVPAEEPGSFAVRVIELCS-STMTCMKGTYLVHLT 506
>pdb|3S1S|A Chain A, Characterization And Crystal Structure Of The Type Iig
Restriction Endonuclease Bpusi
Length = 878
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 215 PNKVRKVGRVARAIAIMSHPIPNTNDS--HSVQVILPQKQLGRRSDMYLFCCSYSHNVAP 272
P ++ + GR + S P PNTND+ +V ++ LGRR H++A
Sbjct: 229 PGRLLEEGRKIDFNVLFSEPEPNTNDNDIWNVNLLSSLNDLGRRILTGDELAELIHDIAT 288
Query: 273 KGK 275
+G+
Sbjct: 289 RGR 291
>pdb|3CF4|A Chain A, Structure Of The Codh Component Of The M. Barkeri Acds
Complex
Length = 807
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 293 LKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFIST 329
L PG++ G D+ + + DRYEPV P D C T
Sbjct: 46 LFPGLE--GYRDDWNFKLLDRYEPVITPMCDQCCYCT 80
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 168 SAVYGGTYMLN-KPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGR 223
AV G Y+ + +P VEFD EG+V+ + + K VV + N+V ++ R
Sbjct: 132 GAVIFGYYVRDPRPFGVVEFDSEGRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIAR 188
>pdb|1Y10|A Chain A, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|B Chain B, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|C Chain C, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y10|D Chain D, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme,
Inhibited State
pdb|1Y11|A Chain A, Mycobacterial Adenylyl Cyclase Rv1264, Holoenzyme, Active
State
Length = 407
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 85 GMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARF 144
G D T V+ RE+ YG+D + + A+ L R +++P D V M+ E+ AR
Sbjct: 61 GDDGTYVSAREISENYGVDLELLQRVQRAVGLAR----VDDP--DAVVHMRADGEAAARA 114
Query: 145 Q 145
Q
Sbjct: 115 Q 115
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 134 MKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVV 193
+K +A+ ARF I P YGL E + VY T +P V+FD E
Sbjct: 328 IKRFADRFARFNLQERVIRPSYGLAE--------ATVYVATSKPGQPPETVDFDTESLSA 379
Query: 194 G 194
G
Sbjct: 380 G 380
>pdb|2EV1|A Chain A, Structure Of Rv1264n, The Regulatory Domain Of The
Mycobacterial Adenylyl Cylcase Rv1264, At Ph 6.0
pdb|2EV1|B Chain B, Structure Of Rv1264n, The Regulatory Domain Of The
Mycobacterial Adenylyl Cylcase Rv1264, At Ph 6.0
pdb|2EV2|A Chain A, Structure Of Rv1264n, The Regulatory Domain Of The
Mycobacterial Adenylyl Cylcase Rv1264, At Ph 8.5
pdb|2EV2|B Chain B, Structure Of Rv1264n, The Regulatory Domain Of The
Mycobacterial Adenylyl Cylcase Rv1264, At Ph 8.5
pdb|2EV3|A Chain A, Structure Of Rv1264n, The Regulatory Domain Of The
Mycobacterial Adenylyl Cylcase Rv1264, At Ph 5.3
pdb|2EV3|B Chain B, Structure Of Rv1264n, The Regulatory Domain Of The
Mycobacterial Adenylyl Cylcase Rv1264, At Ph 5.3
pdb|2EV4|A Chain A, Structure Of Rv1264n, The Regulatory Domain Of The
Mycobacterial Adenylyl Cylcase Rv1264, With A Salt
Precipitant
pdb|2EV4|B Chain B, Structure Of Rv1264n, The Regulatory Domain Of The
Mycobacterial Adenylyl Cylcase Rv1264, With A Salt
Precipitant
Length = 222
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 85 GMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARF 144
G D T V+ RE+ YG+D + + A+ L R +++P D V M+ E+ AR
Sbjct: 73 GDDGTYVSAREISENYGVDLELLQRVQRAVGLAR----VDDP--DAVVHMRADGEAAARA 126
Query: 145 Q 145
Q
Sbjct: 127 Q 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,801,926
Number of Sequences: 62578
Number of extensions: 469152
Number of successful extensions: 1314
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1287
Number of HSP's gapped (non-prelim): 25
length of query: 370
length of database: 14,973,337
effective HSP length: 100
effective length of query: 270
effective length of database: 8,715,537
effective search space: 2353194990
effective search space used: 2353194990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)