Query 017499
Match_columns 370
No_of_seqs 199 out of 573
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 09:06:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00996 GDI: GDP dissociation 100.0 4E-107 9E-112 816.1 35.1 361 1-362 76-436 (438)
2 KOG1439 RAB proteins geranylge 100.0 3.1E-97 7E-102 717.2 27.8 362 1-363 76-437 (440)
3 PTZ00363 rab-GDP dissociation 100.0 4.4E-89 9.5E-94 691.4 38.3 365 1-366 75-441 (443)
4 COG5044 MRS6 RAB proteins gera 100.0 5.4E-82 1.2E-86 605.2 23.2 353 1-362 77-433 (434)
5 KOG4405 GDP dissociation inhib 100.0 1.6E-69 3.5E-74 523.4 17.7 355 1-363 134-507 (547)
6 TIGR02734 crtI_fam phytoene de 99.1 1.6E-08 3.5E-13 104.5 23.2 198 4-213 52-274 (502)
7 COG1233 Phytoene dehydrogenase 98.8 4.1E-08 8.9E-13 101.6 13.5 190 11-213 66-279 (487)
8 TIGR02730 carot_isom carotene 98.8 4.6E-08 1E-12 101.1 11.8 180 24-213 78-284 (493)
9 TIGR02733 desat_CrtD C-3',4' d 98.7 9.3E-07 2E-11 91.3 17.7 181 90-284 169-376 (492)
10 PRK07233 hypothetical protein; 98.4 2E-05 4.2E-10 79.3 18.8 190 8-211 58-250 (434)
11 TIGR03467 HpnE squalene-associ 98.4 2.4E-05 5.3E-10 78.0 18.1 194 4-210 43-249 (419)
12 TIGR02732 zeta_caro_desat caro 98.2 9.1E-05 2E-09 76.5 17.9 195 10-211 61-280 (474)
13 PLN02612 phytoene desaturase 98.1 0.00017 3.7E-09 76.2 19.6 192 10-210 155-361 (567)
14 TIGR02731 phytoene_desat phyto 98.1 0.00019 4E-09 73.3 18.8 192 10-211 61-272 (453)
15 PLN02576 protoporphyrinogen ox 98.1 0.00012 2.6E-09 75.5 17.0 193 3-210 66-292 (496)
16 KOG4254 Phytoene desaturase [C 98.1 8.6E-06 1.9E-10 81.9 7.2 77 134-213 242-319 (561)
17 PLN02487 zeta-carotene desatur 98.0 0.00023 4.9E-09 75.2 17.1 196 10-212 137-357 (569)
18 PRK12416 protoporphyrinogen ox 97.9 0.00026 5.7E-09 72.5 15.7 185 10-211 68-276 (463)
19 COG1232 HemY Protoporphyrinoge 97.9 0.001 2.2E-08 68.2 18.7 273 3-298 55-367 (444)
20 PRK11883 protoporphyrinogen ox 97.7 0.013 2.8E-07 59.3 23.2 250 11-283 64-353 (451)
21 PRK07208 hypothetical protein; 97.6 0.0036 7.9E-08 64.3 17.4 64 148-211 208-276 (479)
22 TIGR00562 proto_IX_ox protopor 97.5 0.0019 4.2E-08 65.8 14.9 190 3-210 59-274 (462)
23 PRK13977 myosin-cross-reactive 96.7 0.049 1.1E-06 57.6 15.2 168 21-213 108-292 (576)
24 PF01266 DAO: FAD dependent ox 95.4 0.031 6.7E-07 53.9 6.0 65 149-214 135-202 (358)
25 PF01593 Amino_oxidase: Flavin 94.4 0.067 1.5E-06 52.4 5.5 54 157-211 208-261 (450)
26 TIGR02485 CobZ_N-term precorri 93.9 0.27 5.8E-06 50.1 8.9 59 151-209 116-177 (432)
27 TIGR02352 thiamin_ThiO glycine 93.9 0.17 3.7E-06 48.8 7.1 63 149-212 125-190 (337)
28 PF03486 HI0933_like: HI0933-l 92.8 0.48 1E-05 48.3 8.6 77 132-209 80-160 (409)
29 TIGR01373 soxB sarcosine oxida 92.0 0.51 1.1E-05 47.3 7.6 52 159-210 184-235 (407)
30 COG0579 Predicted dehydrogenas 91.7 0.41 8.8E-06 49.1 6.5 61 152-213 144-209 (429)
31 PRK00711 D-amino acid dehydrog 91.2 0.55 1.2E-05 47.0 6.9 60 152-212 192-254 (416)
32 PLN02529 lysine-specific histo 89.1 2.3 5E-05 46.6 9.9 80 149-235 348-446 (738)
33 COG1231 Monoamine oxidase [Ami 88.1 1.2 2.7E-05 45.5 6.6 70 136-210 184-257 (450)
34 PLN02676 polyamine oxidase 88.1 1.1 2.3E-05 46.7 6.4 63 146-210 211-281 (487)
35 PRK04176 ribulose-1,5-biphosph 87.2 1.8 3.9E-05 41.1 6.8 52 158-209 104-167 (257)
36 TIGR03377 glycerol3P_GlpA glyc 87.1 1.5 3.2E-05 45.8 6.7 62 149-212 117-187 (516)
37 PRK08274 tricarballylate dehyd 87.1 1.6 3.4E-05 44.8 6.8 56 155-211 128-188 (466)
38 COG2509 Uncharacterized FAD-de 87.0 1.5 3.3E-05 45.0 6.4 60 153-213 165-228 (486)
39 TIGR03862 flavo_PP4765 unchara 86.9 2.4 5.1E-05 42.8 7.8 74 132-209 57-135 (376)
40 PTZ00383 malate:quinone oxidor 86.6 1.6 3.5E-05 45.6 6.7 54 158-212 211-270 (497)
41 COG2081 Predicted flavoprotein 86.2 3.4 7.4E-05 41.8 8.4 74 134-209 84-161 (408)
42 PRK10157 putative oxidoreducta 86.2 1.7 3.8E-05 44.2 6.5 52 158-210 108-159 (428)
43 TIGR01377 soxA_mon sarcosine o 85.8 2.2 4.8E-05 42.0 7.0 60 150-211 134-196 (380)
44 PF04820 Trp_halogenase: Trypt 85.8 2 4.4E-05 44.3 6.8 50 158-208 154-204 (454)
45 TIGR03378 glycerol3P_GlpB glyc 85.4 2.1 4.5E-05 43.8 6.5 58 158-216 263-324 (419)
46 PRK07121 hypothetical protein; 85.3 2.3 4.9E-05 44.1 6.9 54 157-210 176-234 (492)
47 TIGR01813 flavo_cyto_c flavocy 85.1 2.5 5.4E-05 42.9 7.1 52 158-209 130-186 (439)
48 TIGR02032 GG-red-SF geranylger 84.7 2.4 5.1E-05 39.7 6.3 53 158-210 91-143 (295)
49 PRK10015 oxidoreductase; Provi 84.6 2.7 5.8E-05 42.9 7.1 52 158-210 108-159 (429)
50 PRK11101 glpA sn-glycerol-3-ph 82.7 3 6.6E-05 44.0 6.7 62 149-212 138-208 (546)
51 PLN02568 polyamine oxidase 82.1 3 6.5E-05 44.0 6.4 58 149-210 233-291 (539)
52 PRK06134 putative FAD-binding 82.0 3.7 8E-05 43.7 7.0 54 158-212 217-275 (581)
53 PF00890 FAD_binding_2: FAD bi 81.6 3.9 8.4E-05 41.0 6.8 54 157-211 140-199 (417)
54 TIGR00292 thiazole biosynthesi 81.3 4.9 0.00011 38.2 6.9 52 158-209 100-164 (254)
55 TIGR00275 flavoprotein, HI0933 81.1 7.4 0.00016 39.3 8.6 76 134-211 78-156 (400)
56 PRK12835 3-ketosteroid-delta-1 81.1 4.4 9.6E-05 43.2 7.2 57 158-214 213-275 (584)
57 COG2907 Predicted NAD/FAD-bind 80.2 11 0.00024 37.8 9.0 166 63-236 123-308 (447)
58 PRK11728 hydroxyglutarate oxid 80.1 5 0.00011 40.1 6.9 61 150-212 138-201 (393)
59 TIGR03197 MnmC_Cterm tRNA U-34 79.9 3.4 7.4E-05 41.0 5.6 60 149-211 123-186 (381)
60 TIGR03329 Phn_aa_oxid putative 79.5 4 8.7E-05 41.9 6.2 57 151-210 173-232 (460)
61 PLN02464 glycerol-3-phosphate 79.2 4.6 0.0001 43.5 6.7 56 158-213 232-294 (627)
62 PRK05257 malate:quinone oxidor 78.8 5.5 0.00012 41.6 6.9 63 152-214 174-245 (494)
63 PF13738 Pyr_redox_3: Pyridine 77.8 5.8 0.00013 35.2 6.0 54 157-212 81-135 (203)
64 PRK05675 sdhA succinate dehydr 77.3 7 0.00015 41.5 7.3 52 158-209 126-183 (570)
65 PRK07045 putative monooxygenas 77.3 6.3 0.00014 39.1 6.6 53 158-210 106-160 (388)
66 PLN02268 probable polyamine ox 76.8 4.4 9.5E-05 41.0 5.4 52 152-210 195-247 (435)
67 PRK08958 sdhA succinate dehydr 76.4 7.7 0.00017 41.4 7.3 51 159-209 144-200 (588)
68 PRK12839 hypothetical protein; 76.3 7.6 0.00016 41.3 7.2 53 158-210 214-271 (572)
69 TIGR01320 mal_quin_oxido malat 76.2 8 0.00017 40.3 7.2 63 152-214 169-239 (483)
70 PRK08275 putative oxidoreducta 76.1 7.3 0.00016 41.1 7.1 52 158-209 137-194 (554)
71 PRK12845 3-ketosteroid-delta-1 76.0 6.6 0.00014 41.7 6.6 56 158-214 217-278 (564)
72 KOG2844 Dimethylglycine dehydr 76.0 4.3 9.3E-05 43.8 5.1 57 158-215 187-243 (856)
73 TIGR01816 sdhA_forward succina 75.3 8.9 0.00019 40.7 7.4 50 159-209 120-175 (565)
74 PLN03000 amine oxidase 75.1 3.9 8.5E-05 45.6 4.8 78 151-235 374-470 (881)
75 PRK06847 hypothetical protein; 74.4 8.8 0.00019 37.7 6.8 53 158-212 107-160 (375)
76 COG0644 FixC Dehydrogenases (f 74.2 7.9 0.00017 38.9 6.5 53 158-210 95-147 (396)
77 PRK12409 D-amino acid dehydrog 73.9 13 0.00027 37.3 7.8 62 150-212 186-255 (410)
78 PLN02328 lysine-specific histo 73.4 5.4 0.00012 44.2 5.3 54 150-210 429-482 (808)
79 PRK12843 putative FAD-binding 73.2 9.3 0.0002 40.6 7.0 51 158-209 221-276 (578)
80 PRK06481 fumarate reductase fl 72.1 8.8 0.00019 40.0 6.4 55 159-214 191-251 (506)
81 PRK12844 3-ketosteroid-delta-1 71.9 12 0.00026 39.6 7.4 57 157-214 207-269 (557)
82 PF01134 GIDA: Glucose inhibit 71.9 10 0.00022 38.5 6.5 56 158-214 95-152 (392)
83 PRK09564 coenzyme A disulfide 71.5 13 0.00028 37.6 7.4 57 158-216 191-247 (444)
84 PRK09078 sdhA succinate dehydr 70.9 9.9 0.00021 40.6 6.5 51 159-209 150-206 (598)
85 PLN02976 amine oxidase 70.4 7.7 0.00017 45.6 5.8 57 149-210 927-992 (1713)
86 PTZ00139 Succinate dehydrogena 70.3 11 0.00023 40.6 6.7 51 159-209 167-223 (617)
87 PRK01747 mnmC bifunctional tRN 70.2 7.8 0.00017 41.8 5.7 59 149-210 396-458 (662)
88 PRK08401 L-aspartate oxidase; 70.2 12 0.00025 38.7 6.7 51 158-210 120-170 (466)
89 PRK12842 putative succinate de 70.1 13 0.00029 39.4 7.2 56 158-214 214-275 (574)
90 PRK13339 malate:quinone oxidor 69.9 12 0.00025 39.3 6.7 61 152-212 175-244 (497)
91 TIGR01812 sdhA_frdA_Gneg succi 69.2 12 0.00027 39.4 6.8 50 159-209 130-185 (566)
92 KOG1336 Monodehydroascorbate/f 68.8 11 0.00023 39.1 5.9 65 146-211 243-309 (478)
93 PRK07333 2-octaprenyl-6-methox 67.9 15 0.00032 36.5 6.8 52 158-211 111-163 (403)
94 PRK05945 sdhA succinate dehydr 67.5 17 0.00037 38.5 7.5 51 158-209 135-191 (575)
95 PRK08205 sdhA succinate dehydr 66.9 15 0.00033 39.1 6.9 52 158-209 140-200 (583)
96 PRK11259 solA N-methyltryptoph 66.3 16 0.00035 35.8 6.6 58 152-211 140-200 (376)
97 PRK07190 hypothetical protein; 66.2 14 0.0003 38.4 6.4 55 155-210 106-160 (487)
98 PRK07804 L-aspartate oxidase; 65.4 14 0.00031 38.8 6.4 52 158-209 144-204 (541)
99 PRK05329 anaerobic glycerol-3- 65.0 23 0.00049 36.4 7.5 55 159-214 260-318 (422)
100 PRK08773 2-octaprenyl-3-methyl 65.0 18 0.0004 35.9 6.8 51 158-210 113-164 (392)
101 TIGR01984 UbiH 2-polyprenyl-6- 64.5 17 0.00038 35.7 6.4 51 157-209 104-156 (382)
102 PRK07057 sdhA succinate dehydr 63.9 18 0.00039 38.6 6.8 51 159-209 149-205 (591)
103 PRK06116 glutathione reductase 62.8 24 0.00053 35.9 7.3 58 158-216 208-266 (450)
104 PLN00128 Succinate dehydrogena 62.1 19 0.00042 38.8 6.7 51 159-209 188-244 (635)
105 TIGR01811 sdhA_Bsu succinate d 62.0 22 0.00047 38.2 7.0 51 159-209 130-190 (603)
106 PRK07512 L-aspartate oxidase; 61.6 20 0.00044 37.5 6.6 50 159-209 137-191 (513)
107 PRK06175 L-aspartate oxidase; 61.2 22 0.00048 36.3 6.7 50 159-209 129-183 (433)
108 PRK06452 sdhA succinate dehydr 59.9 21 0.00046 37.9 6.4 50 159-209 137-192 (566)
109 PF06100 Strep_67kDa_ant: Stre 59.7 1.1E+02 0.0024 32.1 11.3 83 127-209 175-268 (500)
110 KOG2820 FAD-dependent oxidored 59.6 22 0.00048 35.5 5.9 77 134-210 125-207 (399)
111 PRK06263 sdhA succinate dehydr 59.4 20 0.00043 37.8 6.1 52 158-209 134-191 (543)
112 PRK12834 putative FAD-binding 59.2 25 0.00054 37.0 6.8 55 159-214 149-227 (549)
113 PF01494 FAD_binding_3: FAD bi 58.9 24 0.00051 33.6 6.2 52 158-210 111-167 (356)
114 PRK08163 salicylate hydroxylas 58.9 22 0.00047 35.2 6.1 51 158-210 109-161 (396)
115 PRK07573 sdhA succinate dehydr 58.6 25 0.00055 38.0 6.8 47 162-209 174-226 (640)
116 PRK12837 3-ketosteroid-delta-1 58.3 29 0.00062 36.3 7.0 54 159-213 174-234 (513)
117 PF00070 Pyr_redox: Pyridine n 57.7 23 0.00049 26.8 4.7 41 157-199 39-80 (80)
118 TIGR01988 Ubi-OHases Ubiquinon 57.4 25 0.00054 34.4 6.1 51 157-209 105-157 (385)
119 PRK04965 NADH:flavorubredoxin 57.1 37 0.00081 33.6 7.4 57 158-216 183-240 (377)
120 TIGR00551 nadB L-aspartate oxi 57.0 23 0.0005 36.7 6.0 51 158-209 128-183 (488)
121 PRK07843 3-ketosteroid-delta-1 56.1 31 0.00067 36.5 6.9 57 158-215 208-270 (557)
122 COG0654 UbiH 2-polyprenyl-6-me 55.9 29 0.00062 34.6 6.4 59 152-211 98-158 (387)
123 TIGR02374 nitri_red_nirB nitri 55.4 36 0.00078 37.7 7.5 56 159-216 183-239 (785)
124 TIGR03364 HpnW_proposed FAD de 54.8 25 0.00055 34.4 5.7 57 149-211 133-193 (365)
125 PRK14989 nitrite reductase sub 53.7 41 0.0009 37.7 7.6 70 147-216 176-246 (847)
126 PRK08071 L-aspartate oxidase; 53.6 24 0.00053 36.8 5.6 49 159-209 131-184 (510)
127 PRK13369 glycerol-3-phosphate 53.5 34 0.00074 35.6 6.6 52 158-211 155-211 (502)
128 PRK07494 2-octaprenyl-6-methox 53.4 31 0.00068 34.0 6.1 50 158-209 111-161 (388)
129 PRK06834 hypothetical protein; 53.3 35 0.00077 35.4 6.7 51 157-209 99-150 (488)
130 PRK08243 4-hydroxybenzoate 3-m 53.3 34 0.00073 34.1 6.4 55 155-210 100-158 (392)
131 PF06039 Mqo: Malate:quinone o 53.2 38 0.00081 35.3 6.6 62 151-212 170-241 (488)
132 PRK07395 L-aspartate oxidase; 52.7 33 0.00071 36.4 6.4 52 158-209 134-191 (553)
133 TIGR00136 gidA glucose-inhibit 52.2 29 0.00063 37.4 5.9 68 147-214 82-154 (617)
134 PRK12266 glpD glycerol-3-phosp 52.2 35 0.00076 35.6 6.5 62 150-213 145-214 (508)
135 PRK05249 soluble pyridine nucl 51.9 43 0.00094 34.1 7.0 57 158-216 216-273 (461)
136 PF12831 FAD_oxidored: FAD dep 51.9 4.8 0.0001 41.0 0.0 49 159-208 91-143 (428)
137 PRK06184 hypothetical protein; 51.8 39 0.00085 35.0 6.8 51 158-209 109-162 (502)
138 PRK05192 tRNA uridine 5-carbox 51.8 31 0.00067 37.2 6.0 65 149-214 88-157 (618)
139 PRK07364 2-octaprenyl-6-methox 51.2 31 0.00068 34.3 5.7 53 158-210 121-176 (415)
140 PLN02697 lycopene epsilon cycl 50.9 37 0.00081 35.9 6.4 49 159-209 193-242 (529)
141 PRK09754 phenylpropionate diox 50.9 49 0.0011 33.1 7.1 57 157-216 185-242 (396)
142 COG0665 DadA Glycine/D-amino a 50.6 44 0.00095 32.7 6.6 60 151-212 146-209 (387)
143 COG0446 HcaD Uncharacterized N 49.2 50 0.0011 32.3 6.8 58 158-216 178-238 (415)
144 PRK06185 hypothetical protein; 49.1 49 0.0011 32.8 6.8 52 158-210 108-164 (407)
145 TIGR01350 lipoamide_DH dihydro 48.8 62 0.0014 32.9 7.6 66 147-215 201-269 (461)
146 COG0578 GlpA Glycerol-3-phosph 48.3 31 0.00067 36.5 5.3 64 149-214 153-224 (532)
147 PRK08244 hypothetical protein; 48.3 46 0.001 34.3 6.6 53 158-210 100-154 (493)
148 PRK06854 adenylylsulfate reduc 46.1 54 0.0012 35.1 6.9 51 158-209 132-189 (608)
149 PRK06416 dihydrolipoamide dehy 45.9 67 0.0014 32.8 7.3 66 148-216 204-273 (462)
150 PRK05714 2-octaprenyl-3-methyl 45.6 54 0.0012 32.6 6.5 50 158-209 112-162 (405)
151 cd02851 Galactose_oxidase_C_te 44.6 40 0.00087 27.5 4.3 40 241-282 48-87 (101)
152 KOG0042 Glycerol-3-phosphate d 44.5 16 0.00034 38.7 2.4 63 158-220 224-292 (680)
153 PRK06069 sdhA succinate dehydr 44.4 55 0.0012 34.8 6.6 51 158-209 137-194 (577)
154 PTZ00306 NADH-dependent fumara 43.0 58 0.0012 37.9 6.9 56 159-214 545-620 (1167)
155 PF00732 GMC_oxred_N: GMC oxid 42.8 58 0.0013 30.7 5.9 62 153-214 186-257 (296)
156 TIGR01316 gltA glutamate synth 42.2 72 0.0016 32.7 6.9 51 166-216 317-388 (449)
157 TIGR03385 CoA_CoA_reduc CoA-di 41.6 79 0.0017 31.8 7.0 56 158-216 179-234 (427)
158 PRK08013 oxidoreductase; Provi 41.3 67 0.0015 32.0 6.4 50 158-209 111-162 (400)
159 TIGR01423 trypano_reduc trypan 41.2 83 0.0018 32.7 7.2 58 158-216 231-289 (486)
160 COG1251 NirB NAD(P)H-nitrite r 41.2 30 0.00065 37.9 3.9 69 163-233 192-264 (793)
161 PRK08626 fumarate reductase fl 41.2 55 0.0012 35.5 6.0 52 157-209 157-214 (657)
162 PRK05976 dihydrolipoamide dehy 40.6 94 0.002 31.9 7.5 68 148-216 212-282 (472)
163 PRK08641 sdhA succinate dehydr 40.5 68 0.0015 34.2 6.6 51 159-209 134-194 (589)
164 PRK07588 hypothetical protein; 40.5 65 0.0014 31.9 6.1 50 158-210 103-153 (391)
165 PRK07608 ubiquinone biosynthes 40.2 74 0.0016 31.2 6.4 50 158-210 111-162 (388)
166 TIGR01318 gltD_gamma_fam gluta 40.1 81 0.0018 32.5 6.9 49 168-216 330-399 (467)
167 PRK07803 sdhA succinate dehydr 40.0 74 0.0016 34.2 6.8 51 158-209 138-207 (626)
168 TIGR01989 COQ6 Ubiquinone bios 39.8 75 0.0016 32.3 6.5 52 158-209 117-177 (437)
169 PLN02507 glutathione reductase 39.8 88 0.0019 32.6 7.1 57 158-216 244-301 (499)
170 TIGR01421 gluta_reduc_1 glutat 39.6 98 0.0021 31.7 7.4 58 158-216 207-266 (450)
171 KOG0685 Flavin-containing amin 39.1 34 0.00075 35.6 3.8 39 173-212 244-283 (498)
172 PRK08020 ubiF 2-octaprenyl-3-m 39.1 81 0.0018 31.1 6.5 50 158-209 112-163 (391)
173 COG1252 Ndh NADH dehydrogenase 39.0 69 0.0015 32.8 6.0 57 149-212 201-259 (405)
174 PRK12831 putative oxidoreducta 38.8 96 0.0021 32.0 7.2 49 168-216 328-397 (464)
175 TIGR02053 MerA mercuric reduct 38.0 99 0.0021 31.6 7.1 56 158-215 207-266 (463)
176 PRK09126 hypothetical protein; 37.9 94 0.002 30.6 6.8 51 159-211 111-163 (392)
177 PF05834 Lycopene_cycl: Lycope 37.8 65 0.0014 32.0 5.6 49 159-210 88-137 (374)
178 PRK14694 putative mercuric red 37.4 1.1E+02 0.0025 31.3 7.5 57 158-216 218-274 (468)
179 PRK06370 mercuric reductase; V 37.4 1.1E+02 0.0023 31.4 7.2 59 158-216 212-272 (463)
180 PRK09231 fumarate reductase fl 37.4 82 0.0018 33.6 6.5 50 159-209 134-190 (582)
181 TIGR01424 gluta_reduc_2 glutat 37.0 1E+02 0.0022 31.4 7.0 57 158-216 207-264 (446)
182 TIGR01176 fum_red_Fp fumarate 35.9 96 0.0021 33.1 6.8 51 158-209 132-189 (580)
183 TIGR03169 Nterm_to_SelD pyridi 35.4 89 0.0019 30.6 6.1 53 158-216 191-244 (364)
184 TIGR01810 betA choline dehydro 35.4 74 0.0016 33.3 5.8 55 159-214 194-254 (532)
185 PRK08010 pyridine nucleotide-d 35.2 1.2E+02 0.0026 30.8 7.1 66 148-216 190-255 (441)
186 PRK07845 flavoprotein disulfid 34.9 1.2E+02 0.0025 31.3 7.0 57 158-216 218-275 (466)
187 PRK05868 hypothetical protein; 34.9 77 0.0017 31.4 5.6 49 159-210 106-155 (372)
188 PRK05732 2-octaprenyl-6-methox 34.2 1.1E+02 0.0024 30.1 6.5 51 158-210 112-164 (395)
189 PRK06183 mhpA 3-(3-hydroxyphen 34.2 1E+02 0.0022 32.3 6.5 51 159-209 114-168 (538)
190 PRK09897 hypothetical protein; 33.7 77 0.0017 33.6 5.5 56 154-211 101-162 (534)
191 PRK07538 hypothetical protein; 33.6 92 0.002 31.2 6.0 59 152-210 94-160 (413)
192 PLN02463 lycopene beta cyclase 33.6 1E+02 0.0022 31.8 6.3 50 159-211 115-165 (447)
193 PRK12769 putative oxidoreducta 33.6 1.2E+02 0.0025 32.8 7.1 51 166-216 514-585 (654)
194 PRK08850 2-octaprenyl-6-methox 33.3 1.1E+02 0.0024 30.5 6.4 50 158-209 111-162 (405)
195 PTZ00058 glutathione reductase 33.2 1.6E+02 0.0034 31.4 7.8 59 158-216 278-337 (561)
196 PRK13748 putative mercuric red 33.1 1.3E+02 0.0028 31.5 7.2 58 157-216 309-366 (561)
197 PRK06996 hypothetical protein; 32.8 1E+02 0.0022 30.8 6.1 51 158-210 115-169 (398)
198 PRK08132 FAD-dependent oxidore 32.1 1.1E+02 0.0024 32.0 6.5 51 159-209 126-179 (547)
199 PRK07251 pyridine nucleotide-d 31.8 1.6E+02 0.0035 29.7 7.5 66 147-215 188-253 (438)
200 PRK06475 salicylate hydroxylas 31.4 1.1E+02 0.0024 30.5 6.1 52 158-210 107-162 (400)
201 PTZ00318 NADH dehydrogenase-li 31.2 1.2E+02 0.0027 30.6 6.5 51 159-215 229-280 (424)
202 KOG2415 Electron transfer flav 30.9 59 0.0013 33.6 3.9 41 157-197 182-222 (621)
203 KOG1335 Dihydrolipoamide dehyd 30.9 1.2E+02 0.0026 31.2 5.9 55 157-211 251-310 (506)
204 PRK11445 putative oxidoreducta 30.9 1.2E+02 0.0027 29.6 6.3 41 168-210 108-152 (351)
205 TIGR02061 aprA adenosine phosp 30.9 1.4E+02 0.0031 32.1 7.1 54 156-209 124-185 (614)
206 PRK08849 2-octaprenyl-3-methyl 30.8 1E+02 0.0022 30.5 5.7 50 159-210 111-162 (384)
207 PRK07818 dihydrolipoamide dehy 30.6 1.9E+02 0.004 29.6 7.7 66 148-216 204-274 (466)
208 PRK07236 hypothetical protein; 30.5 1.1E+02 0.0023 30.3 5.8 50 158-210 100-149 (386)
209 KOG0029 Amine oxidase [Seconda 30.4 66 0.0014 33.8 4.4 55 149-209 210-265 (501)
210 KOG0184 20S proteasome, regula 30.3 58 0.0013 30.5 3.4 43 188-230 33-76 (254)
211 TIGR01790 carotene-cycl lycope 30.3 1.3E+02 0.0028 29.6 6.3 53 158-212 85-138 (388)
212 TIGR03452 mycothione_red mycot 30.2 1.5E+02 0.0032 30.4 6.9 56 158-216 210-266 (452)
213 PRK06617 2-octaprenyl-6-methox 30.0 1.3E+02 0.0028 29.6 6.3 50 158-209 104-154 (374)
214 PLN02815 L-aspartate oxidase 29.0 1.3E+02 0.0029 32.2 6.5 51 159-209 156-216 (594)
215 PRK06115 dihydrolipoamide dehy 28.5 1.8E+02 0.0038 29.9 7.1 59 158-216 215-277 (466)
216 PF13454 NAD_binding_9: FAD-NA 27.4 83 0.0018 27.1 3.9 52 157-210 100-152 (156)
217 TIGR01292 TRX_reduct thioredox 27.1 2E+02 0.0043 26.7 6.8 51 158-211 57-108 (300)
218 PRK12809 putative oxidoreducta 26.7 1.6E+02 0.0035 31.7 6.7 48 168-215 499-567 (639)
219 TIGR02360 pbenz_hydroxyl 4-hyd 26.7 1.7E+02 0.0036 29.2 6.5 54 155-209 100-157 (390)
220 PRK11749 dihydropyrimidine deh 26.7 1.9E+02 0.0042 29.5 7.0 49 167-216 320-388 (457)
221 PRK15317 alkyl hydroperoxide r 26.6 1.7E+02 0.0038 30.4 6.7 51 158-210 266-317 (517)
222 KOG1594 Uncharacterized enzyme 26.4 25 0.00054 33.8 0.3 32 136-167 57-96 (305)
223 PF01946 Thi4: Thi4 family; PD 25.8 1.5E+02 0.0032 28.0 5.3 74 135-209 73-159 (230)
224 PRK09077 L-aspartate oxidase; 25.6 1.6E+02 0.0035 30.9 6.3 51 159-209 139-201 (536)
225 PRK07846 mycothione reductase; 25.3 1.8E+02 0.0039 29.8 6.5 55 158-215 207-262 (451)
226 TIGR02462 pyranose_ox pyranose 25.2 1.1E+02 0.0024 32.5 5.0 63 152-214 206-278 (544)
227 PRK06327 dihydrolipoamide dehy 25.2 2.4E+02 0.0051 29.0 7.4 67 147-216 214-285 (475)
228 PRK12778 putative bifunctional 24.6 2.1E+02 0.0044 31.5 7.1 50 167-216 617-687 (752)
229 TIGR03140 AhpF alkyl hydropero 24.6 2E+02 0.0044 29.9 6.8 51 158-210 267-318 (515)
230 PRK14727 putative mercuric red 24.5 2.5E+02 0.0054 28.9 7.4 57 158-216 228-284 (479)
231 PRK06912 acoL dihydrolipoamide 24.2 2.7E+02 0.0059 28.4 7.6 57 158-216 211-269 (458)
232 PTZ00052 thioredoxin reductase 24.1 2.4E+02 0.0052 29.3 7.2 56 159-216 223-279 (499)
233 PRK06126 hypothetical protein; 24.0 1.9E+02 0.0041 30.2 6.5 50 159-209 127-182 (545)
234 PF08802 CytB6-F_Fe-S: Cytochr 23.0 63 0.0014 21.8 1.7 16 57-72 3-18 (39)
235 TIGR03219 salicylate_mono sali 22.6 1.7E+02 0.0036 29.3 5.5 48 159-210 106-154 (414)
236 PRK12775 putative trifunctiona 22.3 2.3E+02 0.005 32.5 7.1 51 166-216 617-687 (1006)
237 PF04942 CC: CC domain; Inter 22.3 53 0.0012 21.7 1.2 11 268-278 17-27 (36)
238 KOG1298 Squalene monooxygenase 21.7 4.5E+02 0.0098 27.1 8.1 106 157-271 146-264 (509)
239 PRK06753 hypothetical protein; 21.4 1.8E+02 0.0038 28.4 5.4 50 159-212 99-149 (373)
240 COG1038 PycA Pyruvate carboxyl 21.2 74 0.0016 35.4 2.7 31 147-178 80-111 (1149)
241 COG1635 THI4 Ribulose 1,5-bisp 21.1 2.2E+02 0.0049 27.0 5.5 40 159-198 110-149 (262)
242 PF09118 DUF1929: Domain of un 21.0 82 0.0018 25.4 2.4 22 261-282 64-85 (98)
243 TIGR02023 BchP-ChlP geranylger 20.9 2.5E+02 0.0055 27.8 6.4 49 159-210 93-150 (388)
244 COG0445 GidA Flavin-dependent 20.7 99 0.0022 33.0 3.5 53 162-214 104-158 (621)
245 PF07156 Prenylcys_lyase: Pren 20.6 4.4E+02 0.0095 26.5 8.0 109 89-211 68-184 (368)
246 COG3075 GlpB Anaerobic glycero 20.5 2E+02 0.0044 28.9 5.3 70 146-216 242-319 (421)
247 PRK13512 coenzyme A disulfide 20.3 2.7E+02 0.0058 28.3 6.5 53 158-216 189-242 (438)
No 1
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=100.00 E-value=4.3e-107 Score=816.09 Aligned_cols=361 Identities=58% Similarity=0.999 Sum_probs=317.3
Q ss_pred CcccEEecCchHHHhhhcCCCCceeeeEEeceeEEEeCCeEEEccCCHHHHHhCCCCCHHHHHHHHHHHHHHhhcccCCC
Q 017499 1 MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDP 80 (370)
Q Consensus 1 L~Pkll~a~g~lv~~Li~s~v~~YleF~~l~~~y~~~~g~~~~VP~s~~evf~s~~ls~~eKr~lmkFL~~v~~~~~~~~ 80 (370)
|+||||||+|+||++|++|+++|||||++|+++|+|++|++++||+||+|+|++++||++|||+|||||+++.+|+++++
T Consensus 76 L~PKll~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~ 155 (438)
T PF00996_consen 76 LIPKLLYARGPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDP 155 (438)
T ss_dssp SS--BEETTSHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBG
T ss_pred cchHhhhccCHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998878
Q ss_pred CcccccccchhhHHHHHHHcCCChhHHHHHHHhhhcccCCCcCCcchHHHHHHHHHHHHhhhcccCCCceeecCCCCCcH
Q 017499 81 KTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEL 160 (370)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~i~~alal~~~~~~~~~~~~~~l~ri~~yl~S~g~y~G~sPflyp~yG~geI 160 (370)
++|++.+...+||.+++++|+|+++++++++|+|||+.++++.++|+.++++||++|++|+||| |+||||||+||+|||
T Consensus 156 ~~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~Slgry-G~sPfLyP~YG~GEL 234 (438)
T PF00996_consen 156 STHKGLDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRY-GKSPFLYPLYGLGEL 234 (438)
T ss_dssp GGSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCC-SSSSEEEETT-TTHH
T ss_pred chhhccccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhcc-CCCCEEEEccCCccH
Confidence 8888888788999999999999999999999999999998898889999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCccccccCeEEEEEEeecCCCCCCCC
Q 017499 161 PQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 240 (370)
Q Consensus 161 ~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~y~p~~~~~~~~v~R~i~I~~~pi~~~~~ 240 (370)
||||||+|||+||+||||++|++|.++++|++.||.++||+++|++||++|+|+|+++++.++|+|+|||++|||+++++
T Consensus 235 pQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dpsy~p~~v~~~~~V~RaI~Il~~pi~~t~~ 314 (438)
T PF00996_consen 235 PQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDPSYLPEKVKKTGQVSRAICILDHPIPNTED 314 (438)
T ss_dssp HHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEGGGBGCGEEEEEEEEEEEEEESS-STTSTT
T ss_pred HHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECCccCcccccccceEEEEEEEEcCCCCCCCC
Confidence 99999999999999999999999999888999999999999999999999999999888889999999999999999998
Q ss_pred CCeEEEEeCCCccCCCCCEEEEEecCCccccCCCcEEEEEEeecCCCCcccccHhHHhccCCccceeeeeeeccccCCCC
Q 017499 241 SHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEP 320 (370)
Q Consensus 241 ~~s~~ii~P~~~~~~~~~v~v~~~~~~~~~cP~G~~i~~~st~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~ 320 (370)
..+++||||+++.+|++||||+++|++|++||+|+||+|+||+++|++|++||+|++++|++++++|+.+++.|+|.++|
T Consensus 315 ~~s~~IiiP~~~~~~~~dIyv~~~ss~~~~CP~G~yi~~~St~~~t~~p~~eL~~~l~lL~~i~e~f~~v~~~~~p~~~~ 394 (438)
T PF00996_consen 315 ASSVQIIIPQSQVGRKSDIYVLQLSSSTGVCPKGQYIAYVSTTVETSNPEEELEPALELLGPIEEKFVSVSDLYEPTDDG 394 (438)
T ss_dssp -SSEEEEE-GGGCTSSS-EEEEEEEGGGTSS-TT-EEEEEEEEE-SS-HHHHTHHHHHTT-SESEEEEEEEEEEEESSSS
T ss_pred CceEEEecCCcccCCCCCeEEEEECCCccccCCCcEEEEEEeccCCCCcHHHHHHHHHhhccHHHHhcchhhcccccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEcCCCCCCcchHHHHHHHHHHHHhhcCCCcccccCh
Q 017499 321 SLDNCFISTSYDATTHFESTVTDVLNMYTMITGKVLDLSVDL 362 (370)
Q Consensus 321 ~~~~v~~~~~~d~~~~fe~~~~~v~~i~~~i~g~~~~~~~~~ 362 (370)
..|||||++|||+|+|||++++||++||+||+|+++||++.+
T Consensus 395 ~~~~i~is~~~dat~hfe~~~~dv~~~~~~~~g~~~~~~~~~ 436 (438)
T PF00996_consen 395 TDDNIFISKSYDATSHFETTCEDVLDIYKRITGKDLDLSKRK 436 (438)
T ss_dssp TTTSEEE-----S-SBSHHHHHHHHHHHHHHHSS--------
T ss_pred ccCceEEcCCCCcccchHHHHHHHHHHHHHhhCCccccccCC
Confidence 999999999999999999999999999999999999999754
No 2
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-97 Score=717.23 Aligned_cols=362 Identities=63% Similarity=1.064 Sum_probs=353.8
Q ss_pred CcccEEecCchHHHhhhcCCCCceeeeEEeceeEEEeCCeEEEccCCHHHHHhCCCCCHHHHHHHHHHHHHHhhcccCCC
Q 017499 1 MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDP 80 (370)
Q Consensus 1 L~Pkll~a~g~lv~~Li~s~v~~YleF~~l~~~y~~~~g~~~~VP~s~~evf~s~~ls~~eKr~lmkFL~~v~~~~~~~~ 80 (370)
|+||+|||+|+||++|++++|++||+|++++++|+|.+|++++||.|+.|+|++++||++|||++||||+|+.+|.++++
T Consensus 76 LiPK~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~e~~~ 155 (440)
T KOG1439|consen 76 LIPKFLMANGELVKILIHTGVTRYLEFKSISGSFVYKKGKIYKVPATEAEALTSPLMGLFEKRRVMKFLKFVLNYDEEDP 155 (440)
T ss_pred hchHhhhccchHHHHHHHhchhhheEEEeecceEEEECCeEEECCCCHHHHhcCCccchhHHHHHHHHHHHHhhhhhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccchhhHHHHHHHcCCChhHHHHHHHhhhcccCCCcCCcchHHHHHHHHHHHHhhhcccCCCceeecCCCCCcH
Q 017499 81 KTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEL 160 (370)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~i~~alal~~~~~~~~~~~~~~l~ri~~yl~S~g~y~G~sPflyp~yG~geI 160 (370)
++|+++++...+|++++.+|++..+.+++++|++++..+++|++.|+.++++||++|++|+++| |++|||||+||+|||
T Consensus 156 ~~~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~y-g~~~ylyP~yGlgEL 234 (440)
T KOG1439|consen 156 KTWQGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILLYVRSFARY-GKSPYLYPLYGLGEL 234 (440)
T ss_pred ccccccccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhc-CCCcceecccCcchh
Confidence 9999998877799999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCccccccCeEEEEEEeecCCCCCCCC
Q 017499 161 PQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTND 240 (370)
Q Consensus 161 ~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~y~p~~~~~~~~v~R~i~I~~~pi~~~~~ 240 (370)
||+|||+||++||+||||.+|.+|..+++|++.||++++++.+|+.||++|+|+|+++++.++|+|+|||++||+++|++
T Consensus 235 ~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi~dpSY~~~~~k~vg~viR~iCIl~hpi~~t~~ 314 (440)
T KOG1439|consen 235 PQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVICDPSYFPQKVKKVGQVIRAICILSHPIPNTND 314 (440)
T ss_pred hHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCceeecceEEecCccchHHHHhhhheeeeeEEecCCcCcCCc
Confidence 99999999999999999999999998778999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCccCCCCCEEEEEecCCccccCCCcEEEEEEeecCCCCcccccHhHHhccCCccceeeeeeeccccCCCC
Q 017499 241 SHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEP 320 (370)
Q Consensus 241 ~~s~~ii~P~~~~~~~~~v~v~~~~~~~~~cP~G~~i~~~st~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~~~~~~~~ 320 (370)
.+|+||||||.+++|+++|||..+||+|++||+|+||+|+||+.||.+||.|+.|++++|+++++.|+.+++.|+|.+++
T Consensus 315 ~~S~qiiipq~q~~rksdi~v~~~ss~~~vcpeG~yia~vsT~~Et~~pE~ei~~~lellg~~~e~Fv~i~d~y~p~~~~ 394 (440)
T KOG1439|consen 315 AESAQIIIPQFQVGRKSDIYVFGLSSAHNVCPEGKYIAYVSTTVETPNPEVEILPGLELLGPIDEKFVGISDLYEPVDDG 394 (440)
T ss_pred cceeeEEechhhhCCcccEEEEEeccCCCcCCCceEEEEEEeccCCCChHHhhhhHHHhhCchhhhhccccceEEecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEcCCCCCCcchHHHHHHHHHHHHhhcCCCcccccChh
Q 017499 321 SLDNCFISTSYDATTHFESTVTDVLNMYTMITGKVLDLSVDLS 363 (370)
Q Consensus 321 ~~~~v~~~~~~d~~~~fe~~~~~v~~i~~~i~g~~~~~~~~~~ 363 (370)
..+|+|++.+||+|+|||+++.++++||++++|+++||+....
T Consensus 395 ~~~~~f~s~syDaT~HFet~~~dv~~i~~~~~~~~~~~~~~~~ 437 (440)
T KOG1439|consen 395 TESNIFISTSYDATTHFETTVYDVLDIYKRLTGKELDLSEDDE 437 (440)
T ss_pred ccceEEEEcccCCCCchHHHHHHHHHHHHhhcccccccccccc
Confidence 9999999999999999999999999999999999999985443
No 3
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=100.00 E-value=4.4e-89 Score=691.43 Aligned_cols=365 Identities=61% Similarity=1.070 Sum_probs=348.4
Q ss_pred CcccEEecCchHHHhhhcCCCCceeeeEEeceeEEE-eCCeEEEccCCHHHHHhCCCCCHHHHHHHHHHHHHHhhcccCC
Q 017499 1 MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEND 79 (370)
Q Consensus 1 L~Pkll~a~g~lv~~Li~s~v~~YleF~~l~~~y~~-~~g~~~~VP~s~~evf~s~~ls~~eKr~lmkFL~~v~~~~~~~ 79 (370)
|+||+||++|.+|++|++++++|||||++++++|+| .+|++++||+|+.++|+++.++++|||++||||+++.++.+.+
T Consensus 75 L~Pk~l~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~ 154 (443)
T PTZ00363 75 LIPKFIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDEND 154 (443)
T ss_pred cCCeeeecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCC
Confidence 679999999999999999999999999999999999 8999999999999999999999999999999999999998877
Q ss_pred CCcccccccchhhHHHHHHHcCCChhHHHHHHHhhhcccCCCcCCcchHHHHHHHHHHHHhhhcccCCCceeecCCCCCc
Q 017499 80 PKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGE 159 (370)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~i~~alal~~~~~~~~~~~~~~l~ri~~yl~S~g~y~G~sPflyp~yG~ge 159 (370)
++++++.++...|+.+++++|++++++++++.|++++..++.|.++|+.+++.|+++|+.|+++| |.+||+||+||+|+
T Consensus 155 ~~~~~~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~-g~~p~~yp~gG~g~ 233 (443)
T PTZ00363 155 PETHKGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRY-GKSPFIYPLYGLGG 233 (443)
T ss_pred hhhhcccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhc-cCCcceeeCCCHHH
Confidence 77777766667899999999999999999999999998777788889999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCCCccccccCeEEEEEEeecCCCCCC
Q 017499 160 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNT 238 (370)
Q Consensus 160 I~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~~~y~p~~~~~~~~v~R~i~I~~~pi~~~ 238 (370)
|||+|||+||++||+|+||++|++|..+++|++.+|++ +|++++|+.||+||+|+|+++++.++|+|+|||++|||+++
T Consensus 234 L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~~~~~~~v~R~i~i~~~pi~~~ 313 (443)
T PTZ00363 234 LPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDKVKKVGKVIRCICILNHPIPNT 313 (443)
T ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccccccccccEEEEEEEEEccccccc
Confidence 99999999999999999999999999876688999997 89999999999999999998888899999999999999999
Q ss_pred CCCCeEEEEeCCCccCCCCCEEEEEecCCccccCCCcEEEEEEeecCCCCcccccHhHHhccCCccceeeeeeeccccCC
Q 017499 239 NDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVN 318 (370)
Q Consensus 239 ~~~~s~~ii~P~~~~~~~~~v~v~~~~~~~~~cP~G~~i~~~st~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~~~~~~ 318 (370)
++.+++||+|||.+++++++|||+++|++|++||+|+||+|+||+++|++|++||+|++++|++++++|+.+++.|+|.+
T Consensus 314 ~~~~~~~i~~P~~~~~~~~~i~v~~~s~~~~~cp~g~~i~~~st~~~t~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 393 (443)
T PTZ00363 314 NNANSCQIIIPQKQLGRKNDIYIMLVSSNHGVCPKGKYIAIISTTVETNNPEKEIEPALKLLGPIEEKFVSISDLYEPTE 393 (443)
T ss_pred CcCccEEEEECCcccCCCCCEEEEEecCCCCcCCCCcEEEEEEEecCCCCHHHHHHHHHHHhccchheEEeccccccccc
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEcCCCCCCcchHHHHHHHHHHHHhhcCCCcccccChhhhh
Q 017499 319 EPSLDNCFISTSYDATTHFESTVTDVLNMYTMITGKVLDLSVDLSAAS 366 (370)
Q Consensus 319 ~~~~~~v~~~~~~d~~~~fe~~~~~v~~i~~~i~g~~~~~~~~~~~~~ 366 (370)
++.++|||+|+|||+++|||++++||++||++|+|+++||++.+..++
T Consensus 394 ~~~~~~~~~~~~~d~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (443)
T PTZ00363 394 DGKKDNIFISKSYDATSHFESATEDVLDLYKRITGKDLDLTNIPETAD 441 (443)
T ss_pred cCCCCCEEEeCCCCccccHHHHHHHHHHHHHHhhCCcceecCCCcccc
Confidence 999999999999999999999999999999999999999996655544
No 4
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-82 Score=605.20 Aligned_cols=353 Identities=40% Similarity=0.700 Sum_probs=331.9
Q ss_pred CcccEEecCchHHHhhhcCCCCceeeeEEeceeEEEeCCeEEEccCCHHHHHhCCCCCHHHHHHHHHHHHHHhhcccCCC
Q 017499 1 MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDP 80 (370)
Q Consensus 1 L~Pkll~a~g~lv~~Li~s~v~~YleF~~l~~~y~~~~g~~~~VP~s~~evf~s~~ls~~eKr~lmkFL~~v~~~~~~~~ 80 (370)
|+||+|||+|+|+++|++++|++||||+++.++|+|.+|++++||.|+.|+|.+++||+++||++||||+||.+|.+ ++
T Consensus 77 L~PK~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~-~~ 155 (434)
T COG5044 77 LIPKFLFANSELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAE-QK 155 (434)
T ss_pred hchhhhcccchHHHHHHHhChHhheeeeeccccEEecCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHHh-hh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999987 67
Q ss_pred CcccccccchhhHHHHHHHcCCChhHHHHHHHhhhcccCCCcCCcchHHHHHHHHHHHHhhhcccCCCceeecCCCCCcH
Q 017499 81 KTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEL 160 (370)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~i~~alal~~~~~~~~~~~~~~l~ri~~yl~S~g~y~G~sPflyp~yG~geI 160 (370)
++++.+.....++.++.++|+|+..+.++|+|+||++.+ ++.|++++++||.+|++|+|+| |+||||||+||+|||
T Consensus 156 ~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~ld---l~~p~re~~erIl~Y~~Sf~~y-g~~pyLyp~YGl~El 231 (434)
T COG5044 156 STLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSLD---LDIPAREALERILRYMRSFGDY-GKSPYLYPRYGLGEL 231 (434)
T ss_pred hhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhcc---ccCCchHHHHHHHHHHHhhccc-CCCcceeeccCchhh
Confidence 777766554456777889999999999999999999985 6789999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCccccccC---eEEEEEEeec-CCCC
Q 017499 161 PQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVG---RVARAIAIMS-HPIP 236 (370)
Q Consensus 161 ~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~y~p~~~~~~~---~v~R~i~I~~-~pi~ 236 (370)
||+|||+||++||+||||++|.++.. .+.+.+|..++.+.+|+.||++|+|+|.+++..+ +|+|+|||+. ||.+
T Consensus 232 ~QGFaRssav~GgtymLn~~i~ein~--tk~v~~v~~~~~~~ka~KiI~~~~~~~~~~~~~~q~yriiRa~Ci~~~h~~~ 309 (434)
T COG5044 232 SQGFARSSAVYGGTYMLNQAIDEINE--TKDVETVDKGSLTQKAGKIISSPTYFREDSKSVGQFYRIIRAICILLVHPVP 309 (434)
T ss_pred hHHHHHhhhccCceeecCcchhhhcc--ccceeeeecCcceeecCcccCCcccccccccccchhhhhhHhhhhhhcCccc
Confidence 99999999999999999999998864 3335788889999999999999999998887776 8999999999 9999
Q ss_pred CCCCCCeEEEEeCCCccCCCCCEEEEEecCCccccCCCcEEEEEEeecCCCCcccccHhHHhccCCccceeeeeeecccc
Q 017499 237 NTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEP 316 (370)
Q Consensus 237 ~~~~~~s~~ii~P~~~~~~~~~v~v~~~~~~~~~cP~G~~i~~~st~~~~~~~~~~l~~~~~ll~~~~~~~~~~~~~~~~ 316 (370)
.+.+.+++||+|||.+++++++|||..+||++++||+|+||+|+||+.||.+|+.++.+++++|+++.+.|+.+..+|+|
T Consensus 310 ~~~~~ds~~iif~~~~lk~~~~i~v~~lgs~~~~CPEGy~l~yisT~~et~~~e~ei~~~lell~~~~e~~~~~e~iyq~ 389 (434)
T COG5044 310 FTTGLDSLQIIFPPFSLKRKNDIQVAGLGSGSEVCPEGYYLAYISTIDETPTPEDEILAALELLGPSVEKFVDVEEIYQP 389 (434)
T ss_pred cccccccceeeechhhhcccCceEEEEecCCCCCCCCceEEEEEEeccCCCChHHHHHHHHHhhcchhhccccceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEcCCCCCCcchHHHHHHHHHHHHhhcCCCcccccCh
Q 017499 317 VNEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITGKVLDLSVDL 362 (370)
Q Consensus 317 ~~~~~~~~v~~~~~~d~~~~fe~~~~~v~~i~~~i~g~~~~~~~~~ 362 (370)
..+ .+||+.++|+|.+.|||+...+++.+|++.+|.++.|+.++
T Consensus 390 ~ed--~~~~~~~~s~De~~~~e~l~~~i~~~y~~~t~~~~vfd~~~ 433 (434)
T COG5044 390 DED--TNQVYLSDSVDESSHFESLTYEIKGIYKRFTGTPLVFDQRQ 433 (434)
T ss_pred ccc--cceeEEeccccccccHHHHHHHHHHHHHhhcCCccccccCC
Confidence 876 69999999999999999999999999999999999997543
No 5
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-69 Score=523.39 Aligned_cols=355 Identities=25% Similarity=0.450 Sum_probs=295.5
Q ss_pred CcccEEecCchHHHhhhcCCCCceeeeEEeceeEEEeCCeEEEccCCHHHHHhCCCCCHHHHHHHHHHHHHHhhccc-CC
Q 017499 1 MIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDE-ND 79 (370)
Q Consensus 1 L~Pkll~a~g~lv~~Li~s~v~~YleF~~l~~~y~~~~g~~~~VP~s~~evf~s~~ls~~eKr~lmkFL~~v~~~~~-~~ 79 (370)
|+||+|||+|.||++|++|++.||.|||.|++++.+.+|++..|||||+|||.++.+++.|||+|||||++|.+|.. .+
T Consensus 134 Lvpkilys~g~lI~lLikS~vsrYaEFK~V~r~l~~~eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk~ 213 (547)
T KOG4405|consen 134 LVPKILYSAGELIQLLIKSNVSRYAEFKNVDRILAFREGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEKD 213 (547)
T ss_pred hhhHHHhcccHHHHHHHHhcchhhhhhhccchhhcccCCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhccC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999942 23
Q ss_pred CCcccccccchhhHHHHHHHcCCChhHHHHHHHhhhcccCCCcCCcchHHHHHHHHHHHHhhhcccCCCceeecCCCCCc
Q 017499 80 PKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGE 159 (370)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~i~~alal~~~~~~~~~~~~~~l~ri~~yl~S~g~y~G~sPflyp~yG~ge 159 (370)
+++.. .+.++||.+|++..+|+++++.+++|+|||...++ .++++|+.|.++|+.|+||| |++|||||+||.||
T Consensus 214 ~~~~~--~~~e~~F~EyL~~~rltp~lqs~vl~aIaM~~~~~---~tt~eGm~at~~fl~slGrf-gntpfLfPlYGqGE 287 (547)
T KOG4405|consen 214 PDEYV--EFRERPFSEYLKTMRLTPKLQSIVLHAIAMLSESQ---LTTIEGMDATKNFLTSLGRF-GNTPFLFPLYGQGE 287 (547)
T ss_pred cHHHH--HhhcCcHHHHHHhcCCChhhHHHHHHHHHhcCccc---ccHHHHHHHHHHHHHHhhcc-CCCcceeeccCCCc
Confidence 33333 45678999999999999999999999999986432 46899999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHhCcEEEcCCccceEEEcCC-CcEE-EEEeCCeEEEcCEEEECCCCCCccccc---cCeEEEEEEeecCC
Q 017499 160 LPQAFARLSAVYGGTYMLNKPECKVEFDEE-GKVV-GVTSEGETAKCKKVVCDPSYLPNKVRK---VGRVARAIAIMSHP 234 (370)
Q Consensus 160 I~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~-~~~~-gV~~~ge~i~a~~VV~~~~y~p~~~~~---~~~v~R~i~I~~~p 234 (370)
|||+|||+|||+||+|+|+++|+.|..|++ ++++ ++...|+++.|+.+|..|+|+|+.+.. ..+|+|++.|++.+
T Consensus 288 LpQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~y~pe~~~~~~~~K~Israv~itd~s 367 (547)
T KOG4405|consen 288 LPQCFCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVSPSYAPEVVCSRVQLKQISRAVLITDPS 367 (547)
T ss_pred chHHHHHHHHHhcceEEeccchhheeecccccchhhhHhhhcchhcceeeeecCcccccccccccchhhcceeEEecCcc
Confidence 999999999999999999999999999743 2333 334589999999999999999986432 12699999999999
Q ss_pred CCCCCCCCeEE-EEeCCCccCCCCCEEEEEecCCccccCCCcEEEEEEeecCCCCcccccHhHHh-ccCC-c-cc--e-e
Q 017499 235 IPNTNDSHSVQ-VILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETDHPQTELKPGID-LLGP-V-DE--I-F 307 (370)
Q Consensus 235 i~~~~~~~s~~-ii~P~~~~~~~~~v~v~~~~~~~~~cP~G~~i~~~st~~~~~~~~~~l~~~~~-ll~~-~-~~--~-~ 307 (370)
+.+++..+..+ +..|+...++ ..+.+++++++++.||+|.|++|+|... +..+.++++..+. ++.. + .| + -
T Consensus 368 il~~e~~q~~~ll~~~~~epg~-~avr~iel~~~t~tc~kg~yLvhlT~~~-s~~~~ed~~S~~~kif~t~~~~E~~kp~ 445 (547)
T KOG4405|consen 368 ILKTELDQQLSLLSLLAVEPGA-MAVRLIELCSSTMTCPKGTYLVHLTCLS-SKTAREDLESDVVKIFTTEIKNETSKPR 445 (547)
T ss_pred ccchhHHhhhhhhhccccCcch-hhHHHHHhhcccccCccceEEEEeeccc-CcccccchhhhHHHHhhhhhccccccce
Confidence 98887555533 4456555443 3466789999999999999999999863 4566677777666 4442 1 12 2 2
Q ss_pred eeeeeccccC------CCCCCCcEEEcCCCCCCcchHHHHHHHHHHHHhhcCCCcccccChh
Q 017499 308 YDIYDRYEPV------NEPSLDNCFISTSYDATTHFESTVTDVLNMYTMITGKVLDLSVDLS 363 (370)
Q Consensus 308 ~~~~~~~~~~------~~~~~~~v~~~~~~d~~~~fe~~~~~v~~i~~~i~g~~~~~~~~~~ 363 (370)
..|..+|... ..+.++||++++++|..+||++++++++.+|++|||++-+|...++
T Consensus 446 llw~~yf~~~~~s~~s~s~~~~nvyv~~~pD~nL~y~~aVe~a~~Lf~k~~p~edf~p~~p~ 507 (547)
T KOG4405|consen 446 LLWALYFTMRDSSVISRSPLAENVYVCPPPDCNLGYDEAVEQARTLFQKIFPSEDFLPRAPN 507 (547)
T ss_pred ehHHHHhhHHhhcccccCCCCCceEECCCCCCCcChHHHHHHHHHHHHHhCChhhhCCCCCC
Confidence 3344455431 1245899999999999999999999999999999999877764443
No 6
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.10 E-value=1.6e-08 Score=104.54 Aligned_cols=198 Identities=18% Similarity=0.227 Sum_probs=131.9
Q ss_pred cEEecCchHHHhhhcCC--CCceeeeEEeceeE--EEeCCeEEEccCCHHHHHhC-CCCCHHHHHHHHHHHHHHhhccc-
Q 017499 4 KFIIANGALVRVLIHTD--VTKYLYFKAVDGSF--VYNKGKVHKVPATDMEALKS-PLMGIFEKRRARKFFIYVQDYDE- 77 (370)
Q Consensus 4 kll~a~g~lv~~Li~s~--v~~YleF~~l~~~y--~~~~g~~~~VP~s~~evf~s-~~ls~~eKr~lmkFL~~v~~~~~- 77 (370)
..+...+.+-+++-..+ +.++++|..+++.| .|.||+.+.+|.+.+..... ..+.+.+...+.+|++.+.....
T Consensus 52 ~~~~~~~~~~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~ 131 (502)
T TIGR02734 52 TVITMPEALEELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYRE 131 (502)
T ss_pred eEEccccHHHHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 33433333444444443 56889999999887 35678889999988554443 44567788889999887765221
Q ss_pred -------CCCCccc----------ccccchhhHHHHHHHcCCChhHHHHHHHhhhcccCCCcCCcchHHHHHHHHHHHH-
Q 017499 78 -------NDPKTHE----------GMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAE- 139 (370)
Q Consensus 78 -------~~~~~~~----------~~~~~~~~~~~~~~~~~L~~~l~~~i~~alal~~~~~~~~~~~~~~l~ri~~yl~- 139 (370)
....... .......++.++++++..++.++.++.+. ++....++.+.++..++ ..++.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~-~~~~g~~p~~~~~~~~l---~~~~~~ 207 (502)
T TIGR02734 132 GYRKLGYVPFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFH-ALFLGGNPFRTPSIYAL---ISALER 207 (502)
T ss_pred HHHHHhhCCCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhccc-ceeeccCcccchHHHHH---HHHHHh
Confidence 1111000 00112457788888888888888877432 21111233334444432 22222
Q ss_pred hhhcccCCCceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEECCCC
Q 017499 140 SIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 213 (370)
Q Consensus 140 S~g~y~G~sPflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~~~y 213 (370)
..|.| ||.+|++.++++|.+.+...||.++++++|++|..+ ++++++|++ +|+.+.||.||++.+.
T Consensus 208 ~~g~~-------~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~ 274 (502)
T TIGR02734 208 EWGVW-------FPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADL 274 (502)
T ss_pred hceEE-------EcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcH
Confidence 22444 899999999999999999999999999999999885 678889986 6889999999998774
No 7
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.82 E-value=4.1e-08 Score=101.60 Aligned_cols=190 Identities=16% Similarity=0.133 Sum_probs=127.9
Q ss_pred hHHHhhhcCCCCceeeeEEeceeEE--EeCCeEEEccCCHHHHHhC-CCCCHHHHHHHHHHHHHHhh-cccCC-------
Q 017499 11 ALVRVLIHTDVTKYLYFKAVDGSFV--YNKGKVHKVPATDMEALKS-PLMGIFEKRRARKFFIYVQD-YDEND------- 79 (370)
Q Consensus 11 ~lv~~Li~s~v~~YleF~~l~~~y~--~~~g~~~~VP~s~~evf~s-~~ls~~eKr~lmkFL~~v~~-~~~~~------- 79 (370)
++...|-. --...+++...++.|. +.+|....+..+.+..... ...++.+.+.+++++....+ |....
T Consensus 66 ~~~~~l~~-l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (487)
T COG1233 66 PLFRELGN-LDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPP 144 (487)
T ss_pred HHHHHhcc-CcccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCc
Confidence 44455544 3333488988888884 4457899999998766666 66778889888988886554 32110
Q ss_pred CCccc--cc---------ccchhhHHHHHHHcCCChhHHHHHHHhhhcccCCCcCCcchHHHHHHHHHHHH-hhhcccCC
Q 017499 80 PKTHE--GM---------DLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAE-SIARFQGG 147 (370)
Q Consensus 80 ~~~~~--~~---------~~~~~~~~~~~~~~~L~~~l~~~i~~alal~~~~~~~~~~~~~~l~ri~~yl~-S~g~y~G~ 147 (370)
..... .. .+...+..+.+..+.-++.++..+.+...... ..+. ++. ++-.+..++. +.|.+
T Consensus 145 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~-~~p~-~~~--a~~~~~~~~~~~~G~~--- 217 (487)
T COG1233 145 RSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG-APPS-TPP--ALYLLLSHLGLSGGVF--- 217 (487)
T ss_pred hhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCC-chh--HHHHHHHHhcccCCee---
Confidence 00000 00 01112344444444445667766656533332 2222 222 4445666666 77888
Q ss_pred CceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEECCCC
Q 017499 148 SPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 213 (370)
Q Consensus 148 sPflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~~~y 213 (370)
||++|++.|++++.+++..+||+++++++|++|.++ +|+.+++.. +|+.+.+|.||++.+.
T Consensus 218 ----~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 218 ----YPRGGMGALVDALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred ----eeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEe-CCcceEEeccccceeccceeEecCch
Confidence 999999999999999999999999999999999995 677777775 6679999999999887
No 8
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.77 E-value=4.6e-08 Score=101.13 Aligned_cols=180 Identities=16% Similarity=0.152 Sum_probs=119.0
Q ss_pred eeeeEEeceeE--EEeCCeEEEccCCHHHHHhC-CCCCHHHHHHHHHHHHHHhh-cccC------CCCcccc--------
Q 017499 24 YLYFKAVDGSF--VYNKGKVHKVPATDMEALKS-PLMGIFEKRRARKFFIYVQD-YDEN------DPKTHEG-------- 85 (370)
Q Consensus 24 YleF~~l~~~y--~~~~g~~~~VP~s~~evf~s-~~ls~~eKr~lmkFL~~v~~-~~~~------~~~~~~~-------- 85 (370)
.+++...+..+ .+.+|..+.++.+.+...+. ....+.+...+.+|++.+.. +... .......
T Consensus 78 ~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (493)
T TIGR02730 78 KLETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKH 157 (493)
T ss_pred cccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhc
Confidence 36665554433 45678788999998666555 45568899999999998654 2100 0000000
Q ss_pred -------cccchhhHHHHHHHcCCChhHHHHHHH-hhhcccCCCcCCcchHHHHHHHHHHHHhhhcccCCCceeecCCCC
Q 017499 86 -------MDLTRVTTRELIAKYGLDDNTIDFIGH-ALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGL 157 (370)
Q Consensus 86 -------~~~~~~~~~~~~~~~~L~~~l~~~i~~-alal~~~~~~~~~~~~~~l~ri~~yl~S~g~y~G~sPflyp~yG~ 157 (370)
..+...++.++++++..++.++.++.+ ++..... ...+.|...++-.+..+. .-|.| ||.+|.
T Consensus 158 ~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~-p~~~~p~~~~~~~~~~~~-~~g~~-------~~~gG~ 228 (493)
T TIGR02730 158 PLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVV-PADQTPMINAGMVFSDRH-YGGIN-------YPKGGV 228 (493)
T ss_pred hhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCC-CcccchhhhHHHhhcccc-cceEe-------cCCChH
Confidence 001125677888888889999998643 2222211 112334434322111100 01334 899999
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEECCCC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 213 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~~~y 213 (370)
++|++++.|.+..+||+++++++|++|..+ ++++.+|++ +|+.+.||.||++.+.
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~ 284 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATR 284 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCCh
Confidence 999999999999999999999999999985 688999987 7889999999998653
No 9
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.67 E-value=9.3e-07 Score=91.27 Aligned_cols=181 Identities=13% Similarity=0.115 Sum_probs=107.6
Q ss_pred hhhHHHHHHHc--CCChhHHHHHHHhhhcccCCCcCCcchHHHHHHHHHHHH-hhhcccCCCceeecCCCCCcHHHHHHH
Q 017499 90 RVTTRELIAKY--GLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAE-SIARFQGGSPYIYPLYGLGELPQAFAR 166 (370)
Q Consensus 90 ~~~~~~~~~~~--~L~~~l~~~i~~alal~~~~~~~~~~~~~~l~ri~~yl~-S~g~y~G~sPflyp~yG~geI~Qaf~R 166 (370)
..|+.++++++ .-++.++.++.....++....+.+.++..++- +..|.. ..|.| |+.+|++.|++++.+
T Consensus 169 ~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~-------~~~GG~~~l~~aL~~ 240 (492)
T TIGR02733 169 LLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGAT-VLQMAQAPHGLW-------HLHGSMQTLSDRLVE 240 (492)
T ss_pred hhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHH-HhhccccCCCce-------eecCcHHHHHHHHHH
Confidence 36778888876 45677888764332223322222223333311 112222 12344 899999999999999
Q ss_pred HHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CC-----eEEEcCEEEECCCCC------Cc-----c----cccc---C
Q 017499 167 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG-----ETAKCKKVVCDPSYL------PN-----K----VRKV---G 222 (370)
Q Consensus 167 laAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~g-----e~i~a~~VV~~~~y~------p~-----~----~~~~---~ 222 (370)
.....||++++|++|++|..+ ++++.+|.. +| +.+.||.||++.+.. ++ . .++. .
T Consensus 241 ~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~ 319 (492)
T TIGR02733 241 ALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRKRLKKLPEPS 319 (492)
T ss_pred HHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHHHHhcCCCCC
Confidence 999999999999999999985 567778874 54 689999999986631 21 1 0010 0
Q ss_pred eEEEEEEeecCCCCCCCCCCeEEEEeCCCccCCCCCEEEEEecCCccccCCCcEEEEEEeec
Q 017499 223 RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEA 284 (370)
Q Consensus 223 ~v~R~i~I~~~pi~~~~~~~s~~ii~P~~~~~~~~~v~v~~~~~~~~~cP~G~~i~~~st~~ 284 (370)
...-.-+.++.+....+.......++-+ ...+||...+.+...+|+|+.++++++.+
T Consensus 320 ~~~~v~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~d~~~aP~G~~~l~~~~~~ 376 (492)
T TIGR02733 320 GAFVFYLGVKRAALPVDCPPHLQFLSDH-----QGSLFVSISQEGDGRAPQGEATLIASSFT 376 (492)
T ss_pred ceEEEEEeecccccCCCCCcceeeccCC-----CceEEEEeCCccccCCCCCceEEEEEcCC
Confidence 1112223344421111111112222211 22688876656667799999999888765
No 10
>PRK07233 hypothetical protein; Provisional
Probab=98.41 E-value=2e-05 Score=79.26 Aligned_cols=190 Identities=22% Similarity=0.303 Sum_probs=115.6
Q ss_pred cCchHHHhhhcCCCCceeeeEEeceeEEEeCCeEEEccCCHHHHHhCCCCCHHHHHHHHHHHHHHhhcccCCCCcccccc
Q 017499 8 ANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMD 87 (370)
Q Consensus 8 a~g~lv~~Li~s~v~~YleF~~l~~~y~~~~g~~~~VP~s~~evf~s~~ls~~eKr~lmkFL~~v~~~~~~~~~~~~~~~ 87 (370)
+..++.+++-.-++...+.+..-...+ +.+|+.+.++ +..++++...+++.+|-++...+........ .. .
T Consensus 58 ~~~~~~~l~~~lg~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~ 128 (434)
T PRK07233 58 SDEALLELLDELGLEDKLRWRETKTGY-YVDGKLYPLG-TPLELLRFPHLSLIDKFRLGLLTLLARRIKD-----WR--A 128 (434)
T ss_pred ccHHHHHHHHHcCCCCceeeccCceEE-EECCeEecCC-CHHHHHcCCCCCHHHHHHhHHHHHhhhhccc-----cc--c
Confidence 344567777777887666665433333 3466665554 3445666567788777665444333221010 11 2
Q ss_pred cchhhHHHHHHHcCCChhHHHHHHHhhh--cccCCCcCCcchHHHHHHHHHHHHh-hhcccCCCceeecCCCCCcHHHHH
Q 017499 88 LTRVTTRELIAKYGLDDNTIDFIGHALA--LHRDDRYLNEPALDTVKRMKLYAES-IARFQGGSPYIYPLYGLGELPQAF 164 (370)
Q Consensus 88 ~~~~~~~~~~~~~~L~~~l~~~i~~ala--l~~~~~~~~~~~~~~l~ri~~yl~S-~g~y~G~sPflyp~yG~geI~Qaf 164 (370)
....++.++++.+..++....++ ..+. ++. ....+.++...+.++..+... ...+ ...+.||.+|++.|+++|
T Consensus 129 ~~~~s~~~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~~gG~~~l~~~l 204 (434)
T PRK07233 129 LDKVPAEEWLRRWSGEGVYEVFW-EPLLESKFG-DYADDVSAAWLWSRIKRRGNRRYSLF--GEKLGYLEGGFATLIDAL 204 (434)
T ss_pred cccccHHHHHHHhcCHHHHHHHH-HHHHhcccC-CCccccCHHHHHHHHhhhhccccccC--CceEeccCCCHHHHHHHH
Confidence 23578888887665444333332 3322 111 122223454555555443211 1111 223678999999999999
Q ss_pred HHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECC
Q 017499 165 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDP 211 (370)
Q Consensus 165 ~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~ 211 (370)
.+.+...|+.+++|++|.+|..+ ++++.++..+|+.+.||.||+..
T Consensus 205 ~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~~~~~~~~~ad~vI~a~ 250 (434)
T PRK07233 205 AEAIEARGGEIRLGTPVTSVVID-GGGVTGVEVDGEEEDFDAVISTA 250 (434)
T ss_pred HHHHHhcCceEEeCCCeeEEEEc-CCceEEEEeCCceEECCEEEECC
Confidence 99999999999999999999875 56677777788999999999754
No 11
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.36 E-value=2.4e-05 Score=78.01 Aligned_cols=194 Identities=18% Similarity=0.178 Sum_probs=115.8
Q ss_pred cEEecC-chHHHhhhcCCCCceeeeEEeceeEEEe-CCeE-------EEccCC-HHHHHhCCCCCHHHHHHHHHHHHHHh
Q 017499 4 KFIIAN-GALVRVLIHTDVTKYLYFKAVDGSFVYN-KGKV-------HKVPAT-DMEALKSPLMGIFEKRRARKFFIYVQ 73 (370)
Q Consensus 4 kll~a~-g~lv~~Li~s~v~~YleF~~l~~~y~~~-~g~~-------~~VP~s-~~evf~s~~ls~~eKr~lmkFL~~v~ 73 (370)
..++.. ..+.++|-+-++..++.+.. ....++. +|.. .+.|.. ...+++...+++.+|.++.+++....
T Consensus 43 ~~~~~~~~~~~~l~~~lgl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 121 (419)
T TIGR03467 43 HVLLGAYTNLLALLRRIGAEPRLQGPR-LPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALR 121 (419)
T ss_pred EEEEcccHHHHHHHHHhCCchhhhccc-CCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 344443 45566666667777765522 2222232 2332 122322 23345557899999999888876654
Q ss_pred hcccCCCCcccccccchhhHHHHHHHcCCChhHHHHHHHhhhccc-CCCcCCcchHHHHHHHHHHHHhhhcccCCCceee
Q 017499 74 DYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHR-DDRYLNEPALDTVKRMKLYAESIARFQGGSPYIY 152 (370)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~i~~alal~~-~~~~~~~~~~~~l~ri~~yl~S~g~y~G~sPfly 152 (370)
.... . ...+.|+.+++++++.++.+.+.+...+.... ..++.+.++..++..++. +++.......+.|
T Consensus 122 ~~~~------~--~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~---~~~~~~~~~~~~~ 190 (419)
T TIGR03467 122 RTRF------R--ALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRD---SFLAGRAASDLLL 190 (419)
T ss_pred hcCc------c--ccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHhcCCCcceeee
Confidence 3211 1 12357899999998888877775444433221 111212233334333322 2222212345889
Q ss_pred cCCCCCcHH-HHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEEC
Q 017499 153 PLYGLGELP-QAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCD 210 (370)
Q Consensus 153 p~yG~geI~-Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~ 210 (370)
|++|++++. +++.+.....|+.+++|++|.+|..++ +++..+. .+|+.+.||.||+.
T Consensus 191 ~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~-~~~~~~~~~~g~~~~~d~vi~a 249 (419)
T TIGR03467 191 PRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANA-GGIRALVLSGGETLPADAVVLA 249 (419)
T ss_pred eCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcC-CcceEEEecCCccccCCEEEEc
Confidence 999988765 558888878899999999999999864 4443333 47889999999985
No 12
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.18 E-value=9.1e-05 Score=76.54 Aligned_cols=195 Identities=17% Similarity=0.184 Sum_probs=123.2
Q ss_pred chHHHhhhcCCCCceeeeEEeceeEEEeCCeEEE--------cc-CCHHHHHhCCCCCHHHHHHHHHHHHH---Hh---h
Q 017499 10 GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHK--------VP-ATDMEALKSPLMGIFEKRRARKFFIY---VQ---D 74 (370)
Q Consensus 10 g~lv~~Li~s~v~~YleF~~l~~~y~~~~g~~~~--------VP-~s~~evf~s~~ls~~eKr~lmkFL~~---v~---~ 74 (370)
.++.++|-+-++.+-+.+..-...|.+.++++.. .| .+...+++.+.++..+|-++.+.+.. .. .
T Consensus 61 ~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~ 140 (474)
T TIGR02732 61 ANLFRLMKKVGAEDNLLLKEHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVD 140 (474)
T ss_pred HHHHHHHHHcCCccccccccceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhccc
Confidence 3466677777887666555333334444444322 34 34568888899999999887665521 11 1
Q ss_pred cccCCCCcccccccchhhHHHHHHHcCCChhHHHHHHHhhhccc-CCCcCCcchHHHHHHHHHHHHhhhcccCCCceeec
Q 017499 75 YDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHR-DDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYP 153 (370)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~i~~alal~~-~~~~~~~~~~~~l~ri~~yl~S~g~y~G~sPflyp 153 (370)
+... ...+. ...+.|+.+++++++.++.+.+-+...++... ..+....++..++..++ ++.. +++ .+=..|+
T Consensus 141 ~~~~-~~~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~-~~~~-~~~--~s~~~~~ 213 (474)
T TIGR02732 141 YDGA-MKTIR--DLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFM-LFAA-KTE--ASKLRML 213 (474)
T ss_pred cchh-hhhhh--hhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHh-CCC--cceeeee
Confidence 1110 01111 22457899999999999875554435444332 11222334556666555 3332 444 4667788
Q ss_pred CCCCCc-HHHHHHHHHHHhCcEEEcCCccceEEEcC--CC--cEEEEEe-CC---eEEEcCEEEECC
Q 017499 154 LYGLGE-LPQAFARLSAVYGGTYMLNKPECKVEFDE--EG--KVVGVTS-EG---ETAKCKKVVCDP 211 (370)
Q Consensus 154 ~yG~ge-I~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~--~~--~~~gV~~-~g---e~i~a~~VV~~~ 211 (370)
.+|.++ +.|.+.|..+..||++++|++|++|..++ ++ ++++|.. +| +.+.||+||++-
T Consensus 214 ~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~ 280 (474)
T TIGR02732 214 KGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAAC 280 (474)
T ss_pred cCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECC
Confidence 888777 88989999999999999999999999853 23 3788775 33 568999999853
No 13
>PLN02612 phytoene desaturase
Probab=98.15 E-value=0.00017 Score=76.25 Aligned_cols=192 Identities=15% Similarity=0.111 Sum_probs=118.0
Q ss_pred chHHHhhhcCCCCceeeeEEeceeEEEe--CCeEE--E----ccCC---HHHHHhC-CCCCHHHHHHHHHHHHHHhhccc
Q 017499 10 GALVRVLIHTDVTKYLYFKAVDGSFVYN--KGKVH--K----VPAT---DMEALKS-PLMGIFEKRRARKFFIYVQDYDE 77 (370)
Q Consensus 10 g~lv~~Li~s~v~~YleF~~l~~~y~~~--~g~~~--~----VP~s---~~evf~s-~~ls~~eKr~lmkFL~~v~~~~~ 77 (370)
-.+.++|-+-++.+.++|..-...+.+. ++.+. . .|.. .-++++. ..++..+|-++..-+.... ...
T Consensus 155 ~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~-~~~ 233 (567)
T PLN02612 155 PNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAI-VGG 233 (567)
T ss_pred chHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHh-ccc
Confidence 3567788888888888877655555433 23322 2 3433 2234432 5567777655432111111 100
Q ss_pred CCCCcccccccchhhHHHHHHHcCCChhHHHHHHHhhhccc-CCCcCCcchHHHHHHHHHHHHhhhcccCCCceeecCCC
Q 017499 78 NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHR-DDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG 156 (370)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~i~~alal~~-~~~~~~~~~~~~l~ri~~yl~S~g~y~G~sPflyp~yG 156 (370)
. + ..+ ...+.|+.+++++.+.++.+.+-+...+.... ..++.+.++...+..+..+++ ++ +.+...|+.+|
T Consensus 234 ~-~-~~~--~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~--~~--~gs~~~~~~G~ 305 (567)
T PLN02612 234 Q-A-YVE--AQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQ--EK--HGSKMAFLDGN 305 (567)
T ss_pred c-h-hhh--hcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHh--cc--CCceEeeecCC
Confidence 0 0 001 22457999999999999977764323332111 112212234555555555544 23 35677777776
Q ss_pred C-CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEEC
Q 017499 157 L-GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCD 210 (370)
Q Consensus 157 ~-geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~ 210 (370)
. ..|++++.+..+..||.++||++|++|..++++++.+|.+ +|+.+.||+||++
T Consensus 306 ~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a 361 (567)
T PLN02612 306 PPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSA 361 (567)
T ss_pred chHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEEC
Confidence 4 5688888888778999999999999999876787888885 8999999999986
No 14
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.12 E-value=0.00019 Score=73.33 Aligned_cols=192 Identities=18% Similarity=0.167 Sum_probs=117.3
Q ss_pred chHHHhhhcCCCCceeeeEEeceeEEEe--CCeEE--E---ccCCH---HHHHhC-CCCCHHHHHHHHHHHHHHhhcccC
Q 017499 10 GALVRVLIHTDVTKYLYFKAVDGSFVYN--KGKVH--K---VPATD---MEALKS-PLMGIFEKRRARKFFIYVQDYDEN 78 (370)
Q Consensus 10 g~lv~~Li~s~v~~YleF~~l~~~y~~~--~g~~~--~---VP~s~---~evf~s-~~ls~~eKr~lmkFL~~v~~~~~~ 78 (370)
-.+.++|-+-++.+.+.|..-...|.+. ++... . +|... .++++. ..++..+|-++..-+.........
T Consensus 61 ~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (453)
T TIGR02731 61 PNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQK 140 (453)
T ss_pred chHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCcc
Confidence 3566777778888777776644443322 23222 2 22222 233332 457777776655433221111100
Q ss_pred CCCcccccccchhhHHHHHHHcCCChhHHHHHHHhh--hcccCCCcCCcchHHHHHHHHHHHHhhhcccCCCceeecCCC
Q 017499 79 DPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHAL--ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG 156 (370)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~i~~al--al~~~~~~~~~~~~~~l~ri~~yl~S~g~y~G~sPflyp~yG 156 (370)
.+. ...+.|+.+++++.+.++.+.+.+...+ ++... ++.+.++...+..+.+|+. +.+ | +...+...|
T Consensus 141 ---~~~--~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~-~p~~~S~~~~~~~l~~~~~--~~~-g-~~~~~~~g~ 210 (453)
T TIGR02731 141 ---YVE--EQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFI-NPDELSMTVVLTALNRFLQ--ERH-G-SKMAFLDGA 210 (453)
T ss_pred ---chh--hhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHh--cCC-C-CeeEeecCC
Confidence 011 2246799999999999998776432333 33221 2223356666666776664 344 3 333445544
Q ss_pred -CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCe-----EEEcCEEEECC
Q 017499 157 -LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-----TAKCKKVVCDP 211 (370)
Q Consensus 157 -~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge-----~i~a~~VV~~~ 211 (370)
+..+++++++.++..||.++||++|++|..++++++++|.+ +|+ ++.||.||++.
T Consensus 211 ~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~ 272 (453)
T TIGR02731 211 PPERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAM 272 (453)
T ss_pred ChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcC
Confidence 57899999999999999999999999998766778889886 565 79999999863
No 15
>PLN02576 protoporphyrinogen oxidase
Probab=98.10 E-value=0.00012 Score=75.49 Aligned_cols=193 Identities=16% Similarity=0.167 Sum_probs=117.0
Q ss_pred ccEEecCchHHHhhhcCCCCceeeeEEe-ceeEEEeCCeEEEccCCHHHHHhCCCCCHHHHHHHHHHHHHHhhcccCCCC
Q 017499 3 PKFIIANGALVRVLIHTDVTKYLYFKAV-DGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPK 81 (370)
Q Consensus 3 Pkll~a~g~lv~~Li~s~v~~YleF~~l-~~~y~~~~g~~~~VP~s~~evf~s~~ls~~eKr~lmkFL~~v~~~~~~~~~ 81 (370)
|..++.+.+.+..|+..++.+++.|..- ...|+|.+|+++++|.+..+.+....+++.+|-+++.-.. .+....+
T Consensus 66 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~- 141 (496)
T PLN02576 66 PNSFQPSDPELTSAVDSGLRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLPTFDLLSAPGKIRAGLGAF---GWKRPPP- 141 (496)
T ss_pred CchhccCcHHHHHHHHcCChhheecCCCCceEEEEECCEEEEcCCChHHhcCcCcCChhHHHHHhHHHh---hccCCCC-
Confidence 5667788888899999999888776442 3456788999999999988888778888877754432111 1111100
Q ss_pred cccccccchhhHHHHHHHcCCChhHHHHHHHhhh--cccCCCcCCcchHHHHHHHHHHHHhhhc----------------
Q 017499 82 THEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA--LHRDDRYLNEPALDTVKRMKLYAESIAR---------------- 143 (370)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~i~~ala--l~~~~~~~~~~~~~~l~ri~~yl~S~g~---------------- 143 (370)
...+.++.++++.. +.+.+.+.+.-.+. ++.. ++-+-++..+++++..+-.+.|.
T Consensus 142 -----~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~-~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~ 214 (496)
T PLN02576 142 -----PGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAG-DPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNP 214 (496)
T ss_pred -----CCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecC-CHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccc
Confidence 11357888988654 45555544433332 2221 11112333444444332111110
Q ss_pred -----------ccCCCceeecCCCCCcHHHHHHHHHHHhC-cEEEcCCccceEEEcCCCcE-EEEEe-CC-eEEEcCEEE
Q 017499 144 -----------FQGGSPYIYPLYGLGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKV-VGVTS-EG-ETAKCKKVV 208 (370)
Q Consensus 144 -----------y~G~sPflyp~yG~geI~Qaf~RlaAv~G-g~y~L~~~V~~I~~~~~~~~-~gV~~-~g-e~i~a~~VV 208 (370)
. +...+.+..+|++.|++++++. .| +.++||++|.+|..+.++++ ..+.. +| +.+.||+||
T Consensus 215 ~~~~~~~~~~~~-~~~~~~~~~gG~~~L~~~la~~---l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI 290 (496)
T PLN02576 215 KPEPRDPRLPKP-KGQTVGSFRGGLQTLPDALAKR---LGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVV 290 (496)
T ss_pred cccccccccccc-cCCeeEeccchHHHHHHHHHHh---hCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEE
Confidence 1 1223456688999999998754 35 78999999999987544422 22332 45 479999999
Q ss_pred EC
Q 017499 209 CD 210 (370)
Q Consensus 209 ~~ 210 (370)
+.
T Consensus 291 ~a 292 (496)
T PLN02576 291 MT 292 (496)
T ss_pred EC
Confidence 74
No 16
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.06 E-value=8.6e-06 Score=81.93 Aligned_cols=77 Identities=22% Similarity=0.315 Sum_probs=66.1
Q ss_pred HHHHHHhhhcccCCCceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEECCC
Q 017499 134 MKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS 212 (370)
Q Consensus 134 i~~yl~S~g~y~G~sPflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~~~ 212 (370)
+++.|.-+..| ...+-||.+|+|+|+.+.++.+..+||.+-+++.|++|+.| +|+++||+. ||+.+.++.||+|++
T Consensus 242 lh~vlg~~d~~--~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt 318 (561)
T KOG4254|consen 242 LHHVLGELDGH--KGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNAT 318 (561)
T ss_pred HHHHHHhhccc--CCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCc
Confidence 44444444444 45566999999999999999999999999999999999997 599999995 999999999999987
Q ss_pred C
Q 017499 213 Y 213 (370)
Q Consensus 213 y 213 (370)
-
T Consensus 319 ~ 319 (561)
T KOG4254|consen 319 P 319 (561)
T ss_pred h
Confidence 4
No 17
>PLN02487 zeta-carotene desaturase
Probab=98.01 E-value=0.00023 Score=75.25 Aligned_cols=196 Identities=18% Similarity=0.180 Sum_probs=119.8
Q ss_pred chHHHhhhcCCCCceeeeEEeceeEEEeCCeEE----EccCC-----HHHHHhCCCCCHHHHHHHHHHH------HHHhh
Q 017499 10 GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVH----KVPAT-----DMEALKSPLMGIFEKRRARKFF------IYVQD 74 (370)
Q Consensus 10 g~lv~~Li~s~v~~YleF~~l~~~y~~~~g~~~----~VP~s-----~~evf~s~~ls~~eKr~lmkFL------~~v~~ 74 (370)
.++.++|-+-++.+-+.+..--..|.+.+|.+. ..|-. -...++...+++.+|-++..-+ .....
T Consensus 137 ~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~ 216 (569)
T PLN02487 137 NNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALVD 216 (569)
T ss_pred HHHHHHHHhcCCcccccccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhccC
Confidence 457888888888877765432222334455542 22221 1266777889999988773222 21111
Q ss_pred cccCCCCcccccccchhhHHHHHHHcCCChhHHHHHHHhhhcccCC-CcCCcchHHHHHHHHHHHHhhhcccCCCceeec
Q 017499 75 YDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDD-RYLNEPALDTVKRMKLYAESIARFQGGSPYIYP 153 (370)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~i~~alal~~~~-~~~~~~~~~~l~ri~~yl~S~g~y~G~sPflyp 153 (370)
+... ...+. ...+.++.+++++++.++.+.+-+...+++.... ...+.++..++..+..+. .+- +.+=..||
T Consensus 217 ~~~~-~~~~~--~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~---~~~-~~~~l~~~ 289 (569)
T PLN02487 217 PDGA-MRDIR--DLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFA---TKT-EASLLRML 289 (569)
T ss_pred cccc-ccccc--cccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh---hcC-Ccceeeec
Confidence 1100 01111 2245899999999998875555443555544311 121223444444442211 111 23336799
Q ss_pred CCCCCc-HHHHHHHHHHHhCcEEEcCCccceEEEcC--CC--cEEEEEe--C--CeEEEcCEEEECCC
Q 017499 154 LYGLGE-LPQAFARLSAVYGGTYMLNKPECKVEFDE--EG--KVVGVTS--E--GETAKCKKVVCDPS 212 (370)
Q Consensus 154 ~yG~ge-I~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~--~~--~~~gV~~--~--ge~i~a~~VV~~~~ 212 (370)
.+|+++ |++.+++.....||.++++++|++|..+. +| +++||.. + ++.+.||.||++-.
T Consensus 290 ~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p 357 (569)
T PLN02487 290 KGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACD 357 (569)
T ss_pred CCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCC
Confidence 999995 99999999999999999999999999863 23 4888886 3 45789999998643
No 18
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.94 E-value=0.00026 Score=72.46 Aligned_cols=185 Identities=10% Similarity=0.121 Sum_probs=106.7
Q ss_pred chHHHhhhcCCCCceeeeEEeceeEEEeCCeEEEccC--------CHHHHHhCCCCCHHHHHHHHHHHHHHhhcccCCCC
Q 017499 10 GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA--------TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPK 81 (370)
Q Consensus 10 g~lv~~Li~s~v~~YleF~~l~~~y~~~~g~~~~VP~--------s~~evf~s~~ls~~eKr~lmkFL~~v~~~~~~~~~ 81 (370)
..+.+++-+-++.+++-+..-...|+|.+|.++++|. +..+.++...++...|-+.++ ...... .
T Consensus 68 ~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~ 140 (463)
T PRK12416 68 EHVMPLVKDLNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALK---DFITKN----K 140 (463)
T ss_pred HHHHHHHHHcCCccceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHHHHHHhhh---hhccCC----C
Confidence 4456777777888776555544667777777777654 445566666666654533221 111110 0
Q ss_pred cccccccchhhHHHHHHHcCCChhHHHHHHHhh--hcccCCCcCCcchHHHHHHHHHHHHhhhc-------------ccC
Q 017499 82 THEGMDLTRVTTRELIAKYGLDDNTIDFIGHAL--ALHRDDRYLNEPALDTVKRMKLYAESIAR-------------FQG 146 (370)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~i~~al--al~~~~~~~~~~~~~~l~ri~~yl~S~g~-------------y~G 146 (370)
.+ ..+.++.++++... .+.+.+.+.-.+ +++.. +..+-++..+++.+..+..+.|. ..+
T Consensus 141 ~~----~~~~sv~~~l~~~~-~~~~~~~~~~p~~~~~~~~-~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 214 (463)
T PRK12416 141 EF----TKDTSLALFLESFL-GKELVERQIAPVLSGVYSG-KLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAG 214 (463)
T ss_pred CC----CCCCCHHHHHHHhc-CHHHHHHHHHHHhcccccC-CcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCC
Confidence 01 13567888876543 333333221222 22221 11112233344554444332221 113
Q ss_pred CCceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEECC
Q 017499 147 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDP 211 (370)
Q Consensus 147 ~sPflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~~ 211 (370)
+..+.++.+|++.|++++++.... +.+++|++|++|..++ ++ ..|.+ +|+.+.||.||++.
T Consensus 215 ~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~-~~-~~v~~~~g~~~~ad~VI~a~ 276 (463)
T PRK12416 215 NKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQG-DR-YEISFANHESIQADYVVLAA 276 (463)
T ss_pred CCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEcC-CE-EEEEECCCCEEEeCEEEECC
Confidence 455888999999999999886533 6899999999998753 33 35654 78889999999864
No 19
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.89 E-value=0.001 Score=68.18 Aligned_cols=273 Identities=15% Similarity=0.218 Sum_probs=150.0
Q ss_pred ccEEecC-chHHHhhhcCCCCceeeeEEeceeEEEeCCeEEEccCCHHHHHhCCCCCHHHHHHHHHHHHHHhhcccCCCC
Q 017499 3 PKFIIAN-GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPK 81 (370)
Q Consensus 3 Pkll~a~-g~lv~~Li~s~v~~YleF~~l~~~y~~~~g~~~~VP~s~~evf~s~~ls~~eKr~lmkFL~~v~~~~~~~~~ 81 (370)
|+.++++ -.+++++.+-+.++-+-+-.-...|+|.+|+++++|..- ++.=+....-++..+.+++........
T Consensus 55 ~~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~~gkl~p~P~~~--i~~ip~~~~~~~~~~~~~~~~~~~~~~---- 128 (444)
T COG1232 55 PHHFLARKEEILDLIKELGLEDKLLWNSTARKYIYYDGKLHPIPTPT--ILGIPLLLLSSEAGLARALQEFIRPKS---- 128 (444)
T ss_pred hhheecchHHHHHHHHHhCcHHhhccCCcccceEeeCCcEEECCccc--eeecCCccccchhHHHHHHHhhhcccC----
Confidence 4444444 888999999999988887766777999999999999877 333322222133344444433222110
Q ss_pred cccccccchhhHHHHH-HHcCCChhHHHHHHHhh--hcccCCCcCCcchHHHHHHHHHHHHhhhcccCCC----------
Q 017499 82 THEGMDLTRVTTRELI-AKYGLDDNTIDFIGHAL--ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGS---------- 148 (370)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~L~~~l~~~i~~al--al~~~~~~~~~~~~~~l~ri~~yl~S~g~y~G~s---------- 148 (370)
+. ...+.++.+++ +.|| +++.+-++-.+ +.+..+ ..+-++.-+ ..........| |+.
T Consensus 129 -~~--~~~d~sv~~f~r~~fG--~ev~~~~~~pll~giy~~~-~~~LS~~~~---~p~~~~~e~~~-~s~~~g~~~~~~~ 198 (444)
T COG1232 129 -WE--PKQDISVGEFIRRRFG--EEVVERFIEPLLEGIYAGD-ADKLSAAAA---FPILARAERKY-GSLLRGAKKEGLP 198 (444)
T ss_pred -CC--CCCCcCHHHHHHHHHh--HHHHHHHHHHHhhchhcCC-HHHhhHHHh---cchhhhhhhhh-cchhhhhhhccCc
Confidence 11 22356677755 3333 22222111111 111100 000011101 11111222233 322
Q ss_pred -------ceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCC--CC----C
Q 017499 149 -------PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS--YL----P 215 (370)
Q Consensus 149 -------Pflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~--y~----p 215 (370)
+|.+..+|++.+++++.+-.... +++|++|.+|..+ ......+..+|+.+.||.||.... .+ +
T Consensus 199 ~~~~~~~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~-~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~ 274 (444)
T COG1232 199 KQSLKKEKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKK-GAGKTIVDVGGEKITADGVISTAPLPELARLLG 274 (444)
T ss_pred ccccccccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEc-CCccEEEEcCCceEEcceEEEcCCHHHHHHHcC
Confidence 67788889999999999999988 9999999999875 333444556899999999997542 11 1
Q ss_pred cc-----ccc--cCeEEEEEEeecCCCCCCCCCCeEEEEeCCCccCCCCCEEEEEecCCccccCCCcEEEEEEeecCCC-
Q 017499 216 NK-----VRK--VGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVSTEAETD- 287 (370)
Q Consensus 216 ~~-----~~~--~~~v~R~i~I~~~pi~~~~~~~s~~ii~P~~~~~~~~~v~v~~~~~~~~~cP~G~~i~~~st~~~~~- 287 (370)
+. .++ ...++-++..++++ .+....+...+.||..... -. -.+.-...-...-|.|..++++.-.....
T Consensus 275 ~~~~~~~~~~~~~~s~~~vv~~~~~~-~~~~~~~~~g~~iad~~~~-~~-a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~ 351 (444)
T COG1232 275 DEAVSKAAKELQYTSVVTVVVGLDEK-DNPALPDGYGLLIADDDPY-IL-AITFHSNKWPHEAPEGKTLLRVEFGGPGDE 351 (444)
T ss_pred CcchhhhhhhccccceEEEEEEeccc-cccCCCCceEEEEecCCCc-ce-eEEEecccCCCCCCCCcEEEEEEeecCCCc
Confidence 11 111 12466666667775 1112234456777765422 11 11222333456668899999887754322
Q ss_pred -----CcccccHhHHh
Q 017499 288 -----HPQTELKPGID 298 (370)
Q Consensus 288 -----~~~~~l~~~~~ 298 (370)
+.++.++.+++
T Consensus 352 ~~~~~~dee~~~~~l~ 367 (444)
T COG1232 352 SVSTMSDEELVAAVLD 367 (444)
T ss_pred chhccCHHHHHHHHHH
Confidence 23444555555
No 20
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.69 E-value=0.013 Score=59.26 Aligned_cols=250 Identities=13% Similarity=0.134 Sum_probs=129.5
Q ss_pred hHHHhhhcCCCCceeeeEEeceeEEEeCCeEEEccCC--------HHHHHhCCCCCHHHHHHHHHHHHHHhhcccCCCCc
Q 017499 11 ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPAT--------DMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKT 82 (370)
Q Consensus 11 ~lv~~Li~s~v~~YleF~~l~~~y~~~~g~~~~VP~s--------~~evf~s~~ls~~eKr~lmkFL~~v~~~~~~~~~~ 82 (370)
.+.++|-.-++..++.+..-...++|.+|+++.+|.. ..+.+..+.++..+|-+.. ..+... .
T Consensus 64 ~~~~l~~~lgl~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~- 134 (451)
T PRK11883 64 SAPALVKELGLEDELVANTTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAA------ADLRPP--R- 134 (451)
T ss_pred HHHHHHHHcCCccceecCCCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHHhh------CcccCC--C-
Confidence 3566777777776654432234577788888888753 1112222333433332211 111110 0
Q ss_pred ccccccchhhHHHHHHHcCCChhHHHHHHHhhh--cccCCCcCCcchHHHHHHHHHHHHhhh-----------c---ccC
Q 017499 83 HEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA--LHRDDRYLNEPALDTVKRMKLYAESIA-----------R---FQG 146 (370)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~L~~~l~~~i~~ala--l~~~~~~~~~~~~~~l~ri~~yl~S~g-----------~---y~G 146 (370)
+. ...+.++.+++++. +.+...+.+...+. ++.. ++.+.++..+++.+..+..+.+ . + .
T Consensus 135 ~~--~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 209 (451)
T PRK11883 135 WK--PGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAG-DIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKK-T 209 (451)
T ss_pred CC--CCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecC-ChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCC-C
Confidence 11 12357888988653 44444443323332 2221 1212233334444433332211 1 1 1
Q ss_pred CCceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECCC--CC-----Ccc-
Q 017499 147 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPS--YL-----PNK- 217 (370)
Q Consensus 147 ~sPflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~~--y~-----p~~- 217 (370)
...+.++.+|++.|++++++..... .++||++|++|..++ +. ..|. .+|+++.||.||+... .+ +..
T Consensus 210 ~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~-~~-~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~~~ 285 (451)
T PRK11883 210 KGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKSG-DG-YEIVLSNGGEIEADAVIVAVPHPVLPSLFVAPPA 285 (451)
T ss_pred CCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEcC-Ce-EEEEECCCCEEEcCEEEECCCHHHHHHhccChhH
Confidence 2346688999999999988765432 899999999998753 33 3455 4889999999998633 11 111
Q ss_pred ---ccc--cCeEEEEEEeecCCCCCCCCCCeEEEEeCCCccCCCCCEEEEEecC--CccccCCCcEEEEEEee
Q 017499 218 ---VRK--VGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSY--SHNVAPKGKFIAFVSTE 283 (370)
Q Consensus 218 ---~~~--~~~v~R~i~I~~~pi~~~~~~~s~~ii~P~~~~~~~~~v~v~~~~~--~~~~cP~G~~i~~~st~ 283 (370)
.+. ...+....+..+.|+.. .....-+++++.. ..++.-+...+ ....+|.|..++.++..
T Consensus 286 ~~~~~~~~~~~~~~v~l~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~ 353 (451)
T PRK11883 286 FALFKTIPSTSVATVALAFPESATN--LPDGTGFLVARNS---DYTITACTWTSKKWPHTTPEGKVLLRLYVG 353 (451)
T ss_pred HHHHhCCCCCceEEEEEEeccccCC--CCCceEEEecCCC---CCcEEEEEeEcCcCCCCCCCCcEEEEEecC
Confidence 111 13455666667776522 1222345555432 22333322222 23567889888776653
No 21
>PRK07208 hypothetical protein; Provisional
Probab=97.57 E-value=0.0036 Score=64.27 Aligned_cols=64 Identities=25% Similarity=0.433 Sum_probs=53.0
Q ss_pred CceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe---CCe--EEEcCEEEECC
Q 017499 148 SPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDP 211 (370)
Q Consensus 148 sPflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~---~ge--~i~a~~VV~~~ 211 (370)
..|.||.+|++.|++++.+.....|+.+.+|++|.+|..++++.+.++.. +|+ .+.||.||++-
T Consensus 208 ~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~ 276 (479)
T PRK07208 208 EEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSM 276 (479)
T ss_pred eEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECC
Confidence 45889999999999999999999999999999999999865555555553 353 68999999863
No 22
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.55 E-value=0.0019 Score=65.79 Aligned_cols=190 Identities=14% Similarity=0.145 Sum_probs=109.7
Q ss_pred ccEEecCch-HHHhhhcCCCCceeeeEEeceeEEEeC-CeEEEccCCHHHHHhCCCCCHHHHHHHHHHHHHHhhcccCCC
Q 017499 3 PKFIIANGA-LVRVLIHTDVTKYLYFKAVDGSFVYNK-GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDP 80 (370)
Q Consensus 3 Pkll~a~g~-lv~~Li~s~v~~YleF~~l~~~y~~~~-g~~~~VP~s~~evf~s~~ls~~eKr~lmkFL~~v~~~~~~~~ 80 (370)
|..++.+.+ +.++|-+.++..++....-...|+|.+ |+++++|.+..+.++...+++.+|-++. +.... ...
T Consensus 59 ~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~- 132 (462)
T TIGR00562 59 PDSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKLRAG--MDFIR---PAS- 132 (462)
T ss_pred ccccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhHHhh--hhhcc---CCC-
Confidence 344455544 777887778877765433345566665 8999999988888888877877665543 12111 110
Q ss_pred CcccccccchhhHHHHHHHcCCChhHHHHHHHhhh--cccCCCcCCcchHHHHHHHHHHHHh-------h----------
Q 017499 81 KTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA--LHRDDRYLNEPALDTVKRMKLYAES-------I---------- 141 (370)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~i~~ala--l~~~~~~~~~~~~~~l~ri~~yl~S-------~---------- 141 (370)
. ..+.++.++++... .+.+.+.+...+. .+.. +..+-++..+++++...... +
T Consensus 133 ---~---~~d~s~~e~l~~~~-g~~~~~~~~~p~~~~~~~~-~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 204 (462)
T TIGR00562 133 ---P---GKDESVEEFVRRRF-GDEVVENLIEPLLSGIYAG-DPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGS 204 (462)
T ss_pred ---C---CCCcCHHHHHHHhc-CHHHHHHHHHHHhcccccC-CHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccc
Confidence 0 12468888876443 3334443322222 1111 11112233344443222111 0
Q ss_pred --hccc--CCCceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEEC
Q 017499 142 --ARFQ--GGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCD 210 (370)
Q Consensus 142 --g~y~--G~sPflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~ 210 (370)
..|. ++..+....+|++.|++++++... ++.+++|++|.+|..++ ++ +.|.+ +|+++.||.||+.
T Consensus 205 ~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~-~~-~~v~~~~g~~~~ad~VI~t 274 (462)
T TIGR00562 205 GLQLTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHRG-SN-YTLELDNGVTVETDSVVVT 274 (462)
T ss_pred cccccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEecC-Cc-EEEEECCCcEEEcCEEEEC
Confidence 1111 122366778899999999987653 37899999999998753 33 33554 6789999999974
No 23
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=96.67 E-value=0.049 Score=57.56 Aligned_cols=168 Identities=13% Similarity=0.231 Sum_probs=102.3
Q ss_pred CCceeeeEEeceeE-----EEeCCeEEEccCCHHHHHhCCCCCHHHHHHHHHHHHHHhhcccCCCCcccccccchhhHHH
Q 017499 21 VTKYLYFKAVDGSF-----VYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRE 95 (370)
Q Consensus 21 v~~YleF~~l~~~y-----~~~~g~~~~VP~s~~evf~s~~ls~~eKr~lmkFL~~v~~~~~~~~~~~~~~~~~~~~~~~ 95 (370)
..+|++|...++.| ++.+|...+.+. =.++.+.+-.|+|++- .-+ + .+.+.++.+
T Consensus 108 ~dd~~~~~~~~p~~s~~Rl~~~~g~~~d~~~--------~~L~~k~r~~Ll~l~l---~~e-------~--~Ld~~tI~d 167 (576)
T PRK13977 108 LDEFYWFNKDDPNYSKARLIHKRGEILDTDK--------FGLSKKDRKELLKLLL---TPE-------E--KLDDKTIED 167 (576)
T ss_pred ccceeeeecCCcccceeeEEcCCCCEEECcC--------CCCCHHHHHHHHHHhc---cCH-------H--HhCCcCHHH
Confidence 45899999988885 233443333221 1234444334444333 211 1 234567888
Q ss_pred HHHHcCCChhHHHHHHHhhhcccCCCcCCcchHHHHHHHHHHHHhhhcccCCCceeecCCC-CCcHHHHHHHHHHHhCcE
Q 017499 96 LIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG-LGELPQAFARLSAVYGGT 174 (370)
Q Consensus 96 ~~~~~~L~~~l~~~i~~alal~~~~~~~~~~~~~~l~ri~~yl~S~g~y~G~sPflyp~yG-~geI~Qaf~RlaAv~Gg~ 174 (370)
+++......+.-.+. . ++...... -++.+....+++|+.-+.+-+-.+...+..|- .-.|.+.+.+.+...|+.
T Consensus 168 ~f~~~Ff~t~Fw~~w-~--t~FaF~~w--hSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~ 242 (576)
T PRK13977 168 WFSPEFFETNFWYYW-R--TMFAFEKW--HSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVD 242 (576)
T ss_pred HHhhcCchhHHHHHH-H--HHHCCchh--hHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCE
Confidence 876655555433332 2 22222111 24666666666666655666236777777777 458999999999999999
Q ss_pred EEcCCccceEEEc-CC--CcEEEEEe--CCe-----EEEcCEEEE-CCCC
Q 017499 175 YMLNKPECKVEFD-EE--GKVVGVTS--EGE-----TAKCKKVVC-DPSY 213 (370)
Q Consensus 175 y~L~~~V~~I~~~-~~--~~~~gV~~--~ge-----~i~a~~VV~-~~~y 213 (370)
+++|++|++|..+ ++ ++|+||.. +|+ ...+|.||. +.++
T Consensus 243 f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~ 292 (576)
T PRK13977 243 FQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSI 292 (576)
T ss_pred EEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcC
Confidence 9999999999985 23 78999985 332 246788774 4443
No 24
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.38 E-value=0.031 Score=53.88 Aligned_cols=65 Identities=22% Similarity=0.263 Sum_probs=52.8
Q ss_pred ceeecCCC---CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCCCC
Q 017499 149 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL 214 (370)
Q Consensus 149 Pflyp~yG---~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~y~ 214 (370)
.+.+|..| ..++.++|.+.+...|++++.+++|.+|..+ ++++.||.++...++||+||..+...
T Consensus 135 ~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~i~ad~vV~a~G~~ 202 (358)
T PF01266_consen 135 GVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGEIRADRVVLAAGAW 202 (358)
T ss_dssp EEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEEEEECEEEE--GGG
T ss_pred hhcccccccccccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccccccceeEeccccc
Confidence 44588888 7899999999999999999999999999985 67899999854459999999765443
No 25
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.39 E-value=0.067 Score=52.39 Aligned_cols=54 Identities=31% Similarity=0.486 Sum_probs=45.7
Q ss_pred CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECC
Q 017499 157 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDP 211 (370)
Q Consensus 157 ~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~ 211 (370)
.|.+++....++...|+..+||++|++|..+ ++++..+..+|+++.||+||++-
T Consensus 208 ~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~-~~~v~v~~~~g~~~~ad~VI~a~ 261 (450)
T PF01593_consen 208 MGGLSLALALAAEELGGEIRLNTPVTRIERE-DGGVTVTTEDGETIEADAVISAV 261 (450)
T ss_dssp TTTTHHHHHHHHHHHGGGEESSEEEEEEEEE-SSEEEEEETTSSEEEESEEEE-S
T ss_pred ccchhHHHHHHHhhcCceeecCCcceecccc-ccccccccccceEEecceeeecC
Confidence 7888888889999999999999999999986 56666555689999999999853
No 26
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=93.90 E-value=0.27 Score=50.05 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=48.6
Q ss_pred eecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcC-CCcEEEEEe--CCeEEEcCEEEE
Q 017499 151 IYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS--EGETAKCKKVVC 209 (370)
Q Consensus 151 lyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~-~~~~~gV~~--~ge~i~a~~VV~ 209 (370)
.|+..|...+.++|.+.+...|+.++++++|.+|..++ ++++.||.. ++..++||.||.
T Consensus 116 ~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIl 177 (432)
T TIGR02485 116 AFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVL 177 (432)
T ss_pred eeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEE
Confidence 35555566899999999999999999999999998764 578999875 346889999885
No 27
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=93.89 E-value=0.17 Score=48.81 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=51.7
Q ss_pred ceeecCCC---CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCC
Q 017499 149 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS 212 (370)
Q Consensus 149 Pflyp~yG---~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~ 212 (370)
.+.+|.-| ...+.+++.+.+...|+.+..+++|.+|..+ ++++.+|.+++.+++||.||....
T Consensus 125 g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~g~~~a~~vV~a~G 190 (337)
T TIGR02352 125 AVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPSGDVQADQVVLAAG 190 (337)
T ss_pred EEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCCCEEECCEEEEcCC
Confidence 44466666 5799999999999999999999999999874 677888987656899999886544
No 28
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=92.83 E-value=0.48 Score=48.30 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=59.3
Q ss_pred HHHHHHHHhhhccc--CCCceeecCCC-CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEE
Q 017499 132 KRMKLYAESIARFQ--GGSPYIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKV 207 (370)
Q Consensus 132 ~ri~~yl~S~g~y~--G~sPflyp~yG-~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~V 207 (370)
..+..|+.++|..- ..+-.+||.=. ..++.++|-..+...|+.++++++|++|..+ ++++..|++ +++.+.||.|
T Consensus 80 ~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~v 158 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAV 158 (409)
T ss_dssp HHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEE
T ss_pred HHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEE
Confidence 44678888887731 35678899876 7899999999999999999999999999885 567888998 9999999999
Q ss_pred EE
Q 017499 208 VC 209 (370)
Q Consensus 208 V~ 209 (370)
|.
T Consensus 159 IL 160 (409)
T PF03486_consen 159 IL 160 (409)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 29
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=91.98 E-value=0.51 Score=47.31 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEEC
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCD 210 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~ 210 (370)
.+.+++.+.+...|++++.+++|.+|..++++++.+|+++...+.|+.||..
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVva 235 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVA 235 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEEC
Confidence 5678889999999999999999999976445778888875457899987654
No 30
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=91.71 E-value=0.41 Score=49.05 Aligned_cols=61 Identities=28% Similarity=0.352 Sum_probs=49.2
Q ss_pred ecCCC---CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeE-EEcCEEEECCCC
Q 017499 152 YPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGET-AKCKKVVCDPSY 213 (370)
Q Consensus 152 yp~yG---~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~-i~a~~VV~~~~y 213 (370)
.|-+| .++++.++...+...|+..+||++|..|....+| +.-+.+ +|+. ++|+.||..+--
T Consensus 144 ~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl 209 (429)
T COG0579 144 VPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGL 209 (429)
T ss_pred cCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCch
Confidence 66666 5699999999999999999999999999986555 444443 6766 999999976543
No 31
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=91.22 E-value=0.55 Score=47.04 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=48.0
Q ss_pred ecCCC---CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCC
Q 017499 152 YPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS 212 (370)
Q Consensus 152 yp~yG---~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~ 212 (370)
+|.-| ...+.+++.+.+...|+.++.+++|.+|..+ ++++.+|.+++..++||+||....
T Consensus 192 ~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~~~~a~~VV~a~G 254 (416)
T PRK00711 192 LPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGGVITADAYVVALG 254 (416)
T ss_pred CCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCcEEeCCEEEECCC
Confidence 55544 3378899999999999999999999999864 566778888777899999886443
No 32
>PLN02529 lysine-specific histone demethylase 1
Probab=89.13 E-value=2.3 Score=46.61 Aligned_cols=80 Identities=15% Similarity=0.318 Sum_probs=55.1
Q ss_pred ceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCC----------CCCc--
Q 017499 149 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS----------YLPN-- 216 (370)
Q Consensus 149 Pflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~----------y~p~-- 216 (370)
.+....+|+..|++++++ |..++||++|.+|..++++ +.|.++++++.||+||+.-- +.|.
T Consensus 348 ~~~~i~GG~~~Li~aLA~-----~L~IrLnt~V~~I~~~~dG--VtV~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP 420 (738)
T PLN02529 348 DHCFLAGGNWRLINALCE-----GVPIFYGKTVDTIKYGNDG--VEVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELP 420 (738)
T ss_pred ceEEECCcHHHHHHHHHh-----cCCEEcCCceeEEEEcCCe--EEEEECCEEEEcCEEEECCCHHHHHhccccCCCCCC
Confidence 355678899999999886 3349999999999986444 33556788899999997421 1221
Q ss_pred -c----ccc--cCeEEEEEEeecCCC
Q 017499 217 -K----VRK--VGRVARAIAIMSHPI 235 (370)
Q Consensus 217 -~----~~~--~~~v~R~i~I~~~pi 235 (370)
. ++. .+.+...+...++|.
T Consensus 421 ~~K~~AI~rL~yG~v~KV~L~F~~~F 446 (738)
T PLN02529 421 RRKLAAIDRLGFGLLNKVAMVFPSVF 446 (738)
T ss_pred HHHHHHHHcCCCceeEEEEEEeCCcc
Confidence 1 111 246777777787775
No 33
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=88.15 E-value=1.2 Score=45.54 Aligned_cols=70 Identities=27% Similarity=0.394 Sum_probs=52.3
Q ss_pred HHHHhhhcccC---CCceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCC-eEEEcCEEEEC
Q 017499 136 LYAESIARFQG---GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG-ETAKCKKVVCD 210 (370)
Q Consensus 136 ~yl~S~g~y~G---~sPflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~g-e~i~a~~VV~~ 210 (370)
+...+++++.+ .+.-+.+.+|+.-|||||+ +..|..+.|+++|.+|.-+++| +.|++.. +.+++|++||.
T Consensus 184 ~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa---~ql~~~I~~~~~V~rI~q~~~g--V~Vt~~~~~~~~ad~~i~t 257 (450)
T COG1231 184 RSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFA---KQLGTRILLNEPVRRIDQDGDG--VTVTADDVGQYVADYVLVT 257 (450)
T ss_pred hhhhhccccccccccchhhccCccHHHHHHHHH---HHhhceEEecCceeeEEEcCCe--EEEEeCCcceEEecEEEEe
Confidence 34445555543 3555688888999999996 5788999999999999875433 4466654 89999999984
No 34
>PLN02676 polyamine oxidase
Probab=88.13 E-value=1.1 Score=46.68 Aligned_cols=63 Identities=22% Similarity=0.329 Sum_probs=45.5
Q ss_pred CCCceeec-CCCCCcHHHHHHHHH------HHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEEC
Q 017499 146 GGSPYIYP-LYGLGELPQAFARLS------AVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCD 210 (370)
Q Consensus 146 G~sPflyp-~yG~geI~Qaf~Rla------Av~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~ 210 (370)
|..-++.. ..|.+.|++++++-. .+.++.++||++|.+|..+.++ + .|.+ +|+++.||+||+.
T Consensus 211 g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~g-V-~V~~~~G~~~~a~~VIvt 281 (487)
T PLN02676 211 GEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNG-V-TVKTEDGSVYRAKYVIVS 281 (487)
T ss_pred CCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCc-E-EEEECCCCEEEeCEEEEc
Confidence 44445543 578999999988743 2234689999999999876443 3 3554 7889999999974
No 35
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=87.20 E-value=1.8 Score=41.14 Aligned_cols=52 Identities=23% Similarity=0.157 Sum_probs=43.1
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeC------------CeEEEcCEEEE
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE------------GETAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~------------ge~i~a~~VV~ 209 (370)
.++.+.+.+.+...|+.+++++.|.++..++++++.||..+ ...++|+.||.
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ 167 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVD 167 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEE
Confidence 58889999999999999999999999987655588888642 25789999884
No 36
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=87.12 E-value=1.5 Score=45.84 Aligned_cols=62 Identities=19% Similarity=0.150 Sum_probs=49.0
Q ss_pred ceeecCCC---CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CC--eEEEcCEEEECCC
Q 017499 149 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPS 212 (370)
Q Consensus 149 Pflyp~yG---~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~g--e~i~a~~VV~~~~ 212 (370)
.+.||- | ...+.+++.+.|..+|+.+..+++|.+|..+ ++++.+|++ +| ..++|++||....
T Consensus 117 a~~~~d-g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG 187 (516)
T TIGR03377 117 AVKVPD-GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQVVINAAG 187 (516)
T ss_pred EEEeCC-cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCEEEECCC
Confidence 355774 5 4588999999999999999999999999874 677888764 35 3689999996544
No 37
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=87.05 E-value=1.6 Score=44.83 Aligned_cols=56 Identities=27% Similarity=0.359 Sum_probs=45.8
Q ss_pred CCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeC-----CeEEEcCEEEECC
Q 017499 155 YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE-----GETAKCKKVVCDP 211 (370)
Q Consensus 155 yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~-----ge~i~a~~VV~~~ 211 (370)
.|..++.+.+.+.+...|+.++++++|.++..+ +++++||... ...++||.||...
T Consensus 128 g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~~VIlAt 188 (466)
T PRK08274 128 GGGKALVNALYRSAERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRAKAVVLAA 188 (466)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEECCEEEECC
Confidence 344679999999999999999999999999875 6889998752 3568999988643
No 38
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=87.04 E-value=1.5 Score=44.99 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=48.5
Q ss_pred cCCCCC---cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEECCCC
Q 017499 153 PLYGLG---ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY 213 (370)
Q Consensus 153 p~yG~g---eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~~~y 213 (370)
|+=|+- ++.+.+-..-...||.++.++.|++|++. ++.+.+|++ +|+.+.||+||..|..
T Consensus 165 rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 165 RHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred cccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccCc
Confidence 444644 66677788888999999999999999985 666788885 8999999999986543
No 39
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=86.93 E-value=2.4 Score=42.84 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=59.3
Q ss_pred HHHHHHHHhhhcc-c-CCCceeecCCC-CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe--CCeEEEcCE
Q 017499 132 KRMKLYAESIARF-Q-GGSPYIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGETAKCKK 206 (370)
Q Consensus 132 ~ri~~yl~S~g~y-~-G~sPflyp~yG-~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~--~ge~i~a~~ 206 (370)
..+..|++++|.. . ...-.+||.=. ..++..+|-+.+...|+.++++++|++| + +++ .+|.+ +++.++||.
T Consensus 57 ~d~~~fF~~~Gi~~~~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~-~~~-~~v~~~~~~~~~~a~~ 132 (376)
T TIGR03862 57 VALQDWARGLGIETFVGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q-GGT-LRFETPDGQSTIEADA 132 (376)
T ss_pred HHHHHHHHHCCCceEECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e-CCc-EEEEECCCceEEecCE
Confidence 3468899999983 1 36678999777 8899999999999999999999999998 3 333 56665 346799999
Q ss_pred EEE
Q 017499 207 VVC 209 (370)
Q Consensus 207 VV~ 209 (370)
||.
T Consensus 133 vIl 135 (376)
T TIGR03862 133 VVL 135 (376)
T ss_pred EEE
Confidence 884
No 40
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=86.63 E-value=1.6 Score=45.58 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=43.4
Q ss_pred CcHHHHHHHHHHH----hC--cEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCC
Q 017499 158 GELPQAFARLSAV----YG--GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS 212 (370)
Q Consensus 158 geI~Qaf~RlaAv----~G--g~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~ 212 (370)
+.+.++|.+.+.. .| +.+.++++|.+|..+ ++....|.++...++||+||..+.
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G~i~A~~VVvaAG 270 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRGEIRARFVVVSAC 270 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCCEEEeCEEEECcC
Confidence 6899999999988 78 678999999999864 455677887655799999886543
No 41
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=86.24 E-value=3.4 Score=41.82 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=58.4
Q ss_pred HHHHHHhhhc--ccCCCceeecC-CCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEE
Q 017499 134 MKLYAESIAR--FQGGSPYIYPL-YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVC 209 (370)
Q Consensus 134 i~~yl~S~g~--y~G~sPflyp~-yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~ 209 (370)
++.+++++|. +.+.+-=+||. -....|.+++-+-+...|+++++++.|.+|..+ +....|.+ +|++++||.+|.
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~--~~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD--DSGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec--CceEEEEcCCCCEEEccEEEE
Confidence 5566666554 33466666999 569999999999999999999999999999875 34456665 677999998884
No 42
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=86.22 E-value=1.7 Score=44.23 Aligned_cols=52 Identities=19% Similarity=0.295 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEEC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~ 210 (370)
.++-+.+.+.++..|+.++.++.|.++..+ ++++.++.++|+.+.|+.||..
T Consensus 108 ~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~~~g~~i~A~~VI~A 159 (428)
T PRK10157 108 SKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVEADGDVIEAKTVILA 159 (428)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEEcCCcEEECCEEEEE
Confidence 466788889999999999999999998864 5777788778889999999853
No 43
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=85.84 E-value=2.2 Score=41.98 Aligned_cols=60 Identities=20% Similarity=0.169 Sum_probs=45.0
Q ss_pred eeecCCC---CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECC
Q 017499 150 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDP 211 (370)
Q Consensus 150 flyp~yG---~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~ 211 (370)
+.+|..| ...+.+++.+.+...|+.+..+++|.+|..+ ++++ .|.+++..+.||.||...
T Consensus 134 ~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~~i~a~~vV~aa 196 (380)
T TIGR01377 134 LLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKGSYQANKLVVTA 196 (380)
T ss_pred EEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCCEEEeCEEEEec
Confidence 3366666 3488999999999999999999999999764 4443 466655578999776543
No 44
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=85.78 E-value=2 Score=44.29 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=42.3
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEE
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVV 208 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV 208 (370)
++.-+.+.+.|...|++++-++ |.++..+++|.+.+|.+ +|++++||+||
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~I 204 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFI 204 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEE
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEE
Confidence 5788999999999999998885 77888877899999996 89999999999
No 45
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=85.43 E-value=2.1 Score=43.84 Aligned_cols=58 Identities=17% Similarity=0.282 Sum_probs=47.0
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CC--eEEEcCEEEE-CCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVC-DPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~g--e~i~a~~VV~-~~~y~p~ 216 (370)
-+|-+++.+.+...||+++.++.|.++..+ ++++.+|.+ +| +.+.||+||. ...++..
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~ 324 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSN 324 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCH
Confidence 378899999999999999999999999874 678888885 44 4899998774 5566544
No 46
>PRK07121 hypothetical protein; Validated
Probab=85.29 E-value=2.3 Score=44.13 Aligned_cols=54 Identities=28% Similarity=0.396 Sum_probs=44.5
Q ss_pred CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe--CCe--EEEc-CEEEEC
Q 017499 157 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKC-KKVVCD 210 (370)
Q Consensus 157 ~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~--~ge--~i~a-~~VV~~ 210 (370)
..++.+++.+.++..|+++++++++.+++.+++|++.||.. +|+ .++| |.||..
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlA 234 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLA 234 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEEC
Confidence 45799999999999999999999999999875689999975 343 4788 888753
No 47
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=85.14 E-value=2.5 Score=42.90 Aligned_cols=52 Identities=27% Similarity=0.246 Sum_probs=43.7
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe---CCe--EEEcCEEEE
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~---~ge--~i~a~~VV~ 209 (370)
.++.+.+.+.+...|+.++++++|.+++.++++++.||.. +|+ .++||.||.
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVl 186 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVL 186 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEE
Confidence 4799999999999999999999999999876788998874 344 468898885
No 48
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=84.70 E-value=2.4 Score=39.74 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=40.6
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEEC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~ 210 (370)
.++-+.+.+.++..|++++.++.|.++..++++....+..++++++||.||..
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a 143 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGA 143 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEEC
Confidence 46788999999999999999999999987543322233345678999998853
No 49
>PRK10015 oxidoreductase; Provisional
Probab=84.64 E-value=2.7 Score=42.90 Aligned_cols=52 Identities=13% Similarity=0.162 Sum_probs=43.7
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEEC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~ 210 (370)
.++-+.+.+.++..|++++.++.|.++..+ ++++.+|.++++.++|+.||..
T Consensus 108 ~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~~~~~i~A~~VI~A 159 (429)
T PRK10015 108 NRLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQAGDDILEANVVILA 159 (429)
T ss_pred hHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEeCCeEEECCEEEEc
Confidence 466777888888999999999999998764 5778888888888999999963
No 50
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=82.68 E-value=3 Score=43.97 Aligned_cols=62 Identities=18% Similarity=0.093 Sum_probs=48.7
Q ss_pred ceeecCCC---CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CC--eEEEcCEEEECCC
Q 017499 149 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPS 212 (370)
Q Consensus 149 Pflyp~yG---~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~g--e~i~a~~VV~~~~ 212 (370)
.+.||- | ...+..++.+.|..+|+.+..+++|.+|..+ +++++||++ +| ..++||+||....
T Consensus 138 a~~~~d-g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG 208 (546)
T PRK11101 138 AVKVPD-GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAG 208 (546)
T ss_pred EEEecC-cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCC
Confidence 445774 5 3488999999999999999999999999874 678888874 23 4789999996543
No 51
>PLN02568 polyamine oxidase
Probab=82.11 E-value=3 Score=44.04 Aligned_cols=58 Identities=22% Similarity=0.280 Sum_probs=44.8
Q ss_pred ceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEEC
Q 017499 149 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCD 210 (370)
Q Consensus 149 Pflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~ 210 (370)
.+....+|++.|++++++.. -++.++||++|.+|..++++ ..|.+ +|+.+.||+||+.
T Consensus 233 ~~~~i~gG~~~Li~~La~~L--~~~~I~ln~~V~~I~~~~~~--v~V~~~dG~~~~aD~VIvT 291 (539)
T PLN02568 233 EEITIAKGYLSVIEALASVL--PPGTIQLGRKVTRIEWQDEP--VKLHFADGSTMTADHVIVT 291 (539)
T ss_pred CeEEECCcHHHHHHHHHhhC--CCCEEEeCCeEEEEEEeCCe--EEEEEcCCCEEEcCEEEEc
Confidence 46667789999999987754 36789999999999875332 33554 7889999999973
No 52
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=81.98 E-value=3.7 Score=43.67 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=43.8
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe--CCe--EEEc-CEEEECCC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKC-KKVVCDPS 212 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~--~ge--~i~a-~~VV~~~~ 212 (370)
..|.+++.+.+...|+.++++++|.+++.+ ++++.||+. +++ .++| |.||....
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtG 275 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAG 275 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCC
Confidence 468899999999999999999999999875 789999874 343 4788 87775443
No 53
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=81.65 E-value=3.9 Score=41.03 Aligned_cols=54 Identities=26% Similarity=0.348 Sum_probs=45.1
Q ss_pred CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEECC
Q 017499 157 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDP 211 (370)
Q Consensus 157 ~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~~~ 211 (370)
..++.+.+.+.++.+|+.+++++.+.+++.+ +++|+||.. +|+ .++|+.||...
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAt 199 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILAT 199 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE--
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEecc
Confidence 4579999999999999999999999999995 789999974 355 46899988643
No 54
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=81.34 E-value=4.9 Score=38.17 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=42.5
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCC-cEEEEEeC------------CeEEEcCEEEE
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEG-KVVGVTSE------------GETAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~-~~~gV~~~------------ge~i~a~~VV~ 209 (370)
.++.+.+...+...|+.+..++.|+++..++++ ++.||.++ ...++|+.||.
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVd 164 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVD 164 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEE
Confidence 488899999898999999999999999886443 78998753 24688999884
No 55
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=81.10 E-value=7.4 Score=39.29 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=55.6
Q ss_pred HHHHHHhhhccc--CCCceeecCCC-CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEEC
Q 017499 134 MKLYAESIARFQ--GGSPYIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCD 210 (370)
Q Consensus 134 i~~yl~S~g~y~--G~sPflyp~yG-~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~ 210 (370)
+..|+.++|.-- .....+||.-+ ..++.+++.+.++..|+.+++++.|.+|..+ ++ ...|+++++.+.||.||..
T Consensus 78 ~~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~~~~~i~ad~VIlA 155 (400)
T TIGR00275 78 LIDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVETSGGEYEADKVILA 155 (400)
T ss_pred HHHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEECCcEEEcCEEEEC
Confidence 345666666410 12335677665 5799999999999999999999999998653 33 4567777888999999864
Q ss_pred C
Q 017499 211 P 211 (370)
Q Consensus 211 ~ 211 (370)
.
T Consensus 156 t 156 (400)
T TIGR00275 156 T 156 (400)
T ss_pred C
Confidence 3
No 56
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=81.08 E-value=4.4 Score=43.16 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=44.4
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe--CCe--EEEcC--EEEECCCCC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCK--KVVCDPSYL 214 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~--~ge--~i~a~--~VV~~~~y~ 214 (370)
..+...+.+.++..|+++++++++.+++.|++|+|+||.. +|+ .++|+ .|++...|-
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 4677778888888999999999999999977799999974 454 36786 444555555
No 57
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=80.23 E-value=11 Score=37.80 Aligned_cols=166 Identities=15% Similarity=0.189 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhhcccCCCCcccccccchhhHHHHHHHcCCChhHHHHHHHhhhcccCCCcCCcchHHHHH----HHHHHH
Q 017499 63 RRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVK----RMKLYA 138 (370)
Q Consensus 63 r~lmkFL~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~i~~alal~~~~~~~~~~~~~~l~----ri~~yl 138 (370)
+++-++|+.+..++..+....+.....+.++.++++..+.+...++-..+.|+-.- .++|..++-. .+.+|+
T Consensus 123 pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aai----wstp~~d~~~~pa~~~~~f~ 198 (447)
T COG2907 123 PRFPCMLAEILRFYRSDLAPSDNAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAI----WSTPLADASRYPACNFLVFT 198 (447)
T ss_pred hhHHHHHHHHHHHhhhhccchhhhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHH----hcCcHhhhhhhhHHHHHHHH
Confidence 34455555555544321111111111356899999999988877766556653221 1123222221 222343
Q ss_pred Hhhhcc-cCCCceeec-CCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEE--CCCC-
Q 017499 139 ESIARF-QGGSPYIYP-LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVC--DPSY- 213 (370)
Q Consensus 139 ~S~g~y-~G~sPflyp-~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~--~~~y- 213 (370)
.-.|-- --+.|-=+. .+|..+-.| |++|-.+|...++++|..|.--.+|+. -+..+|+..+.|.||. -||.
T Consensus 199 ~nhGll~l~~rp~wrtV~ggS~~yvq---~laa~~~~~i~t~~~V~~l~rlPdGv~-l~~~~G~s~rFD~vViAth~dqA 274 (447)
T COG2907 199 DNHGLLYLPKRPTWRTVAGGSRAYVQ---RLAADIRGRIETRTPVCRLRRLPDGVV-LVNADGESRRFDAVVIATHPDQA 274 (447)
T ss_pred hccCceecCCCCceeEcccchHHHHH---HHhccccceeecCCceeeeeeCCCceE-EecCCCCccccceeeeecChHHH
Confidence 322221 013333232 234444444 788999999999999999976555643 2224699999998774 3333
Q ss_pred ---CCccc----c---cc-CeEEEEEEeecCCCC
Q 017499 214 ---LPNKV----R---KV-GRVARAIAIMSHPIP 236 (370)
Q Consensus 214 ---~p~~~----~---~~-~~v~R~i~I~~~pi~ 236 (370)
+++-. + .. ..-.++++-++..+.
T Consensus 275 l~mL~e~sp~e~qll~a~~Ys~n~aVlhtd~~lm 308 (447)
T COG2907 275 LALLDEPSPEERQLLGALRYSANTAVLHTDASLM 308 (447)
T ss_pred HHhcCCCCHHHHHHHHhhhhhhceeEEeeccccc
Confidence 23221 1 11 256778888887654
No 58
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=80.12 E-value=5 Score=40.07 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=46.9
Q ss_pred eeecCCC---CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCC
Q 017499 150 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS 212 (370)
Q Consensus 150 flyp~yG---~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~ 212 (370)
..+|..| ..++.+++.+.+...|+.+.++++|.++..+ ++. ..|.+++..++||.||....
T Consensus 138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~-~~V~~~~g~i~ad~vV~A~G 201 (393)
T PRK11728 138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANG-VVVRTTQGEYEARTLINCAG 201 (393)
T ss_pred EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCe-EEEEECCCEEEeCEEEECCC
Confidence 3467666 3689999999999999999999999998764 343 35766555799999886443
No 59
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=79.87 E-value=3.4 Score=41.02 Aligned_cols=60 Identities=20% Similarity=0.176 Sum_probs=46.7
Q ss_pred ceeecCCC---CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEECC
Q 017499 149 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDP 211 (370)
Q Consensus 149 Pflyp~yG---~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~~ 211 (370)
...+|.-| ...+.++|.+.+.. |+++..+++|.+|..+ +++ .+|++ +|+.++||.||...
T Consensus 123 al~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~a~~vV~a~ 186 (381)
T TIGR03197 123 GLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDANGEVIAASVVVLAN 186 (381)
T ss_pred ceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCCCCEEEcCEEEEcC
Confidence 34577777 36899999999988 9999999999999864 444 56765 67779999888543
No 60
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=79.54 E-value=4 Score=41.87 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=43.7
Q ss_pred eecCCC---CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEEC
Q 017499 151 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCD 210 (370)
Q Consensus 151 lyp~yG---~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~ 210 (370)
.+|..| ...+.+++.+.+...|+.++.+++|.+|.. +....|.+++..++||+||..
T Consensus 173 ~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~~~~v~t~~g~v~A~~VV~A 232 (460)
T TIGR03329 173 YSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQPAVVRTPDGQVTADKVVLA 232 (460)
T ss_pred EeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CCceEEEeCCcEEECCEEEEc
Confidence 356656 347899999999999999999999998863 333567775557899987754
No 61
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=79.23 E-value=4.6 Score=43.45 Aligned_cols=56 Identities=25% Similarity=0.278 Sum_probs=45.1
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcC-CCcEEEEEe----CCe--EEEcCEEEECCCC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS----EGE--TAKCKKVVCDPSY 213 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~-~~~~~gV~~----~ge--~i~a~~VV~~~~y 213 (370)
..+.+++.+.+...|+++..++.|.++..++ ++++.+|.. +|+ .++||.||....-
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGa 294 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGP 294 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCH
Confidence 4889999999999999999999999998754 477888763 344 6899999965443
No 62
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=78.78 E-value=5.5 Score=41.60 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=45.0
Q ss_pred ecCCC---CCcHHHHHHHHHHHhC-cEEEcCCccceEEEcCCCcEEEEE--e-CCe--EEEcCEEEECCCCC
Q 017499 152 YPLYG---LGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVT--S-EGE--TAKCKKVVCDPSYL 214 (370)
Q Consensus 152 yp~yG---~geI~Qaf~RlaAv~G-g~y~L~~~V~~I~~~~~~~~~gV~--~-~ge--~i~a~~VV~~~~y~ 214 (370)
+|..| .+.+.++|.+.+...| +.+.++++|.+|..++++++.... + +|+ ++.|++||..+...
T Consensus 174 ~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~ 245 (494)
T PRK05257 174 IEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGG 245 (494)
T ss_pred cCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcc
Confidence 55555 3589999999998887 599999999999875455433221 1 353 68999988655443
No 63
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=77.76 E-value=5.8 Score=35.16 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=39.2
Q ss_pred CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEECCC
Q 017499 157 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS 212 (370)
Q Consensus 157 ~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~~~ 212 (370)
..|+.+-+.+.+..+|..+++++.|+++..++++ ..|.+ +|+.+.|+.||..--
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG 135 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATG 135 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeee
Confidence 3577888888899999999999999999987444 66775 667999999996443
No 64
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=77.29 E-value=7 Score=41.53 Aligned_cols=52 Identities=25% Similarity=0.293 Sum_probs=43.9
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEE
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
.+|.+++.+.+...|..+..++.+.+++.+++|+|.||.. +|+ .++||.||.
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVL 183 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVL 183 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEE
Confidence 3789999998888999999999999999866789999974 454 468999885
No 65
>PRK07045 putative monooxygenase; Reviewed
Probab=77.27 E-value=6.3 Score=39.12 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=42.3
Q ss_pred CcHHHHHHHHHHH-hCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEEC
Q 017499 158 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv-~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~ 210 (370)
.+|-+.+.+.++. .|+++++++.|.++..++++.+..|.. +|+++.||.||+.
T Consensus 106 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgA 160 (388)
T PRK07045 106 EQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGA 160 (388)
T ss_pred HHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEEC
Confidence 3677888877654 578999999999998776676667775 7899999999953
No 66
>PLN02268 probable polyamine oxidase
Probab=76.76 E-value=4.4 Score=41.00 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=38.8
Q ss_pred ecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEEC
Q 017499 152 YPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCD 210 (370)
Q Consensus 152 yp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~ 210 (370)
+...|+..|++++++ |..++||++|.+|..++++ + .|.+ +|+.+.||+||+.
T Consensus 195 ~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~~~~-v-~v~~~~g~~~~ad~VIva 247 (435)
T PLN02268 195 LMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRRYNG-V-KVTVEDGTTFVADAAIIA 247 (435)
T ss_pred eecCCHHHHHHHHhc-----cCceeCCCeeEEEEEcCCc-E-EEEECCCcEEEcCEEEEe
Confidence 344578888888754 5679999999999875443 3 3554 7888999999864
No 67
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=76.38 E-value=7.7 Score=41.41 Aligned_cols=51 Identities=22% Similarity=0.212 Sum_probs=43.0
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEE
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
+|.+.+.+.+...|+.+.+++.+.+++.+++|++.||.. +|+ .++|+.||.
T Consensus 144 ~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVIL 200 (588)
T PRK08958 144 ALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVL 200 (588)
T ss_pred HHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence 688899888888899999999999999866789999974 454 478999885
No 68
>PRK12839 hypothetical protein; Provisional
Probab=76.25 E-value=7.6 Score=41.33 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=42.2
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe---CCe-EEE-cCEEEEC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE-TAK-CKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~---~ge-~i~-a~~VV~~ 210 (370)
..|.+++.+.+...|+.+.+++++.+++.+++|++.||.. +|+ .+. ++.||..
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLA 271 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLA 271 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEc
Confidence 4788999999999999999999999998866789999974 344 344 4777653
No 69
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=76.20 E-value=8 Score=40.25 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=45.6
Q ss_pred ecCCC---CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEE-EE-e-CC--eEEEcCEEEECCCCC
Q 017499 152 YPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVG-VT-S-EG--ETAKCKKVVCDPSYL 214 (370)
Q Consensus 152 yp~yG---~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~g-V~-~-~g--e~i~a~~VV~~~~y~ 214 (370)
.|..| ..++.++|.+.+...|+.++++++|.+|..++++.+.. +. + +| ..++||+||..+...
T Consensus 169 ~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~ 239 (483)
T TIGR01320 169 AAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGG 239 (483)
T ss_pred eCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcc
Confidence 56666 36899999999999999999999999998643443322 21 1 23 368999998655544
No 70
>PRK08275 putative oxidoreductase; Provisional
Probab=76.13 E-value=7.3 Score=41.12 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEE
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
.++.+.+.+.+...|+.++.++.|.+++.+++|++.||.. +|+ .++||.||.
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIl 194 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVIL 194 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEE
Confidence 3789999998988999999999999998864688999863 465 478998874
No 71
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=76.02 E-value=6.6 Score=41.74 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=43.8
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe--CCe--EEEc-CEEE-ECCCCC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKC-KKVV-CDPSYL 214 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~--~ge--~i~a-~~VV-~~~~y~ 214 (370)
..|..+|-+.+...|+.+++++++.+++.+ +|+++||.. +|+ .++| +.|| +...|-
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~ 278 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDHRGREVTVTARRGVVLAAGGFD 278 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence 899999999999999999999999999864 789999964 453 3566 5565 444443
No 72
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=75.97 E-value=4.3 Score=43.75 Aligned_cols=57 Identities=23% Similarity=0.252 Sum_probs=47.9
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 215 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~y~p 215 (370)
..++|+++|.|.-.|+...-|+||++|.+. +++..||.+--..++|.+||--+....
T Consensus 187 ~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 187 AGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPHGSIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccCcceecceEEechhHHH
Confidence 479999999999999999999999999985 555669988666789999996655554
No 73
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=75.32 E-value=8.9 Score=40.69 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEE
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
+|.+++.+.+...|+.++.++.+.+++.+ +|++.||.. +|+ .++|+.||.
T Consensus 120 ~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~AkaVIL 175 (565)
T TIGR01816 120 AILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAKAVVL 175 (565)
T ss_pred HHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEeCeEEE
Confidence 79999999888899999999999999985 799999874 454 578999985
No 74
>PLN03000 amine oxidase
Probab=75.14 E-value=3.9 Score=45.59 Aligned_cols=78 Identities=19% Similarity=0.413 Sum_probs=53.9
Q ss_pred eecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEEC-C---------CCCCc---c
Q 017499 151 IYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCD-P---------SYLPN---K 217 (370)
Q Consensus 151 lyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~-~---------~y~p~---~ 217 (370)
..-.+|++.|++++++-. .++||++|.+|..+.++ +.|.++++++.||+||+. | .+.|. .
T Consensus 374 ~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~~dg--V~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~ 446 (881)
T PLN03000 374 CFLPGGNGRLVQALAENV-----PILYEKTVQTIRYGSNG--VKVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQR 446 (881)
T ss_pred EEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEECCCe--EEEEECCcEEEeceEEEcCCHHHHhhCceeeCCCCCHH
Confidence 344589999999998754 27899999999886433 335566678999999973 1 12221 1
Q ss_pred ----ccc--cCeEEEEEEeecCCC
Q 017499 218 ----VRK--VGRVARAIAIMSHPI 235 (370)
Q Consensus 218 ----~~~--~~~v~R~i~I~~~pi 235 (370)
++. .+.+.+.++..+++.
T Consensus 447 K~~AI~rL~~G~l~KViL~Fd~~F 470 (881)
T PLN03000 447 KLDCIKRLGFGLLNKVAMLFPYVF 470 (881)
T ss_pred HHHHHHcCCCcceEEEEEEeCCcc
Confidence 111 257888888888875
No 75
>PRK06847 hypothetical protein; Provisional
Probab=74.36 E-value=8.8 Score=37.68 Aligned_cols=53 Identities=26% Similarity=0.308 Sum_probs=42.1
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECCC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPS 212 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~~ 212 (370)
.++.+.+.+.+...|+.+++++.|.++..+ ++.+ .|. .+|+++.||.||+...
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~~-~v~~~~g~~~~ad~vI~AdG 160 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQD-DDGV-TVTFSDGTTGRYDLVVGADG 160 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEc-CCEE-EEEEcCCCEEEcCEEEECcC
Confidence 488899999998899999999999998764 3333 344 4889999999996543
No 76
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=74.21 E-value=7.9 Score=38.87 Aligned_cols=53 Identities=19% Similarity=0.247 Sum_probs=45.1
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEEC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~ 210 (370)
.++-|-+...|+..|+.+..++.+..+..++++.+.++..++..++||+||..
T Consensus 95 ~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~A 147 (396)
T COG0644 95 AKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDA 147 (396)
T ss_pred HHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEEC
Confidence 46778888999999999999999999998766777777667789999999963
No 77
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=73.88 E-value=13 Score=37.29 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=42.8
Q ss_pred eeecCCCC---CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEE-EeCC----eEEEcCEEEECCC
Q 017499 150 YIYPLYGL---GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGV-TSEG----ETAKCKKVVCDPS 212 (370)
Q Consensus 150 flyp~yG~---geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV-~~~g----e~i~a~~VV~~~~ 212 (370)
+.+|.-|. ..+.+++.+.+...|+++..+++|.+|..+ ++.+... ..++ ..++||+||....
T Consensus 186 ~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~~v~~~~~~~~~~~~i~a~~vV~a~G 255 (410)
T PRK12409 186 YYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGVVLTVQPSAEHPSRTLEFDGVVVCAG 255 (410)
T ss_pred EEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEcCCCCccceEecCEEEECCC
Confidence 33555443 356789999999999999999999999864 4444322 2232 3789998885443
No 78
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=73.44 E-value=5.4 Score=44.20 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=41.3
Q ss_pred eeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEEC
Q 017499 150 YIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCD 210 (370)
Q Consensus 150 flyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~ 210 (370)
+.+-.+|+..|++++++-. + ++||++|.+|..+.++ + -|..+|+.+.||+||+.
T Consensus 429 ~~~v~GG~~~Li~aLa~~L---~--I~ln~~V~~I~~~~dg-V-~V~~~G~~~~AD~VIvT 482 (808)
T PLN02328 429 HCFIPGGNDTFVRELAKDL---P--IFYERTVESIRYGVDG-V-IVYAGGQEFHGDMVLCT 482 (808)
T ss_pred EEEECCcHHHHHHHHHhhC---C--cccCCeeEEEEEcCCe-E-EEEeCCeEEEcCEEEEC
Confidence 3444588999999998743 3 7899999999986444 2 34458899999999974
No 79
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=73.23 E-value=9.3 Score=40.64 Aligned_cols=51 Identities=22% Similarity=0.220 Sum_probs=41.4
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe--CCe--EEEc-CEEEE
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKC-KKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~--~ge--~i~a-~~VV~ 209 (370)
..|.+++-+.+...|+.+++++.+.+++.+ ++++.||.. +|+ .++| +.||.
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVl 276 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVL 276 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEE
Confidence 378999999999999999999999999875 789999975 444 4676 66664
No 80
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=72.05 E-value=8.8 Score=40.04 Aligned_cols=55 Identities=22% Similarity=0.211 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe---CC--eEEEcCEEEECC-CCC
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EG--ETAKCKKVVCDP-SYL 214 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~---~g--e~i~a~~VV~~~-~y~ 214 (370)
.+.+++.+.+...|+.++++++|.++..+ +|++.||.. +| ..++||.||... .|-
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEK-DGKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEec-CCEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 68999999999999999999999999764 688989874 33 358899988533 344
No 81
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=71.92 E-value=12 Score=39.60 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=44.7
Q ss_pred CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe--CCe--EEEcC-EEE-ECCCCC
Q 017499 157 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCK-KVV-CDPSYL 214 (370)
Q Consensus 157 ~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~--~ge--~i~a~-~VV-~~~~y~ 214 (370)
...|.+.+.+.+...|+++++++.|.+++.+ +++++||.. +|+ .++|+ .|| +...+-
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVRDGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence 4578999999999999999999999999985 789999975 564 36784 355 544444
No 82
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=71.90 E-value=10 Score=38.53 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=45.1
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEE-CCCCC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVC-DPSYL 214 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~-~~~y~ 214 (370)
....+.+-+..+-+..+-.....|.+|..+ +++++||.+ +|+.+.||.||. ...|+
T Consensus 95 ~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e-~~~v~GV~~~~g~~~~a~~vVlaTGtfl 152 (392)
T PF01134_consen 95 DKYSRAMREKLESHPNLTIIQGEVTDLIVE-NGKVKGVVTKDGEEIEADAVVLATGTFL 152 (392)
T ss_dssp HHHHHHHHHHHHTSTTEEEEES-EEEEEEC-TTEEEEEEETTSEEEEECEEEE-TTTGB
T ss_pred HHHHHHHHHHHhcCCCeEEEEcccceEEec-CCeEEEEEeCCCCEEecCEEEEeccccc
Confidence 456777777788888888899999999884 799999997 899999999884 45555
No 83
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=71.49 E-value=13 Score=37.62 Aligned_cols=57 Identities=21% Similarity=0.202 Sum_probs=46.2
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~y~p~ 216 (370)
.++.+.+-+.....|..+++++.|.++. +++++.++..+++.+.||.||......|.
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~--~~~~~~~v~~~~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLI--GEDKVEGVVTDKGEYEADVVIVATGVKPN 247 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEe--cCCcEEEEEeCCCEEEcCEEEECcCCCcC
Confidence 5778888888899999999999999985 34566677777778999999987766654
No 84
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=70.91 E-value=9.9 Score=40.65 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEE
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
+|.+++-+.+...|+.+..++.+.+++.+++|++.||.. +|+ .+.|+.||.
T Consensus 150 ~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVL 206 (598)
T PRK09078 150 AILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVL 206 (598)
T ss_pred HHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEE
Confidence 688899888888999999999999999865589999873 454 578999885
No 85
>PLN02976 amine oxidase
Probab=70.38 E-value=7.7 Score=45.65 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=41.6
Q ss_pred ceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcC--------CCcEEEEEe-CCeEEEcCEEEEC
Q 017499 149 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDE--------EGKVVGVTS-EGETAKCKKVVCD 210 (370)
Q Consensus 149 Pflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~--------~~~~~gV~~-~ge~i~a~~VV~~ 210 (370)
......+|++.|+++|++-. .++||++|.+|.... ++.-+.|.+ +|+++.||+||+.
T Consensus 927 ~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVT 992 (1713)
T PLN02976 927 AHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLIT 992 (1713)
T ss_pred ceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEe
Confidence 34456789999999998743 389999999998731 112233444 8889999999974
No 86
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=70.32 E-value=11 Score=40.55 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEE
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
+|.+++.+.+...|+.++.++.+.+++.+++|++.||.. +|+ .++|+.||.
T Consensus 167 ~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVL 223 (617)
T PTZ00139 167 AMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVI 223 (617)
T ss_pred HHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEE
Confidence 788999998988999999999999998855789999963 454 578999885
No 87
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=70.25 E-value=7.8 Score=41.82 Aligned_cols=59 Identities=22% Similarity=0.208 Sum_probs=44.8
Q ss_pred ceeecCCC---CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEEC
Q 017499 149 PYIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCD 210 (370)
Q Consensus 149 Pflyp~yG---~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~ 210 (370)
...+|..| ...+.+++.+.+.. |+++..+++|.+|..+ ++.+. |.+ +|+.++|++||..
T Consensus 396 g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~~-v~t~~g~~~~ad~VV~A 458 (662)
T PRK01747 396 GIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE-DDGWQ-LDFAGGTLASAPVVVLA 458 (662)
T ss_pred cEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEEE-EEECCCcEEECCEEEEC
Confidence 34477766 24889999999888 9999999999999864 45444 665 5667789998853
No 88
>PRK08401 L-aspartate oxidase; Provisional
Probab=70.25 E-value=12 Score=38.72 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=42.7
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEEC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~ 210 (370)
.++.+++.+.+...|+.+..+ .+..+..+ ++++.||..+|+.++||.||..
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~-~g~v~Gv~~~g~~i~a~~VVLA 170 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIK-NGKAYGVFLDGELLKFDATVIA 170 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEee-CCEEEEEEECCEEEEeCeEEEC
Confidence 379999999999999998765 78888764 6889999888889999998853
No 89
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=70.05 E-value=13 Score=39.41 Aligned_cols=56 Identities=21% Similarity=0.316 Sum_probs=43.4
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe---CCe-EEEcC-EEE-ECCCCC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE-TAKCK-KVV-CDPSYL 214 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~---~ge-~i~a~-~VV-~~~~y~ 214 (370)
.+|.+++.+.+...|+.+++++.|.++..+ +++++||.. +++ .++++ .|| +...+-
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 579999999999999999999999999885 789999875 243 46775 455 554443
No 90
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=69.92 E-value=12 Score=39.29 Aligned_cols=61 Identities=16% Similarity=0.094 Sum_probs=42.2
Q ss_pred ecCCC---CCcHHHHHHHHHHH-hCcEEEcCCccceEEEcCCCcEEE-EE-e-CCe--EEEcCEEEECCC
Q 017499 152 YPLYG---LGELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVG-VT-S-EGE--TAKCKKVVCDPS 212 (370)
Q Consensus 152 yp~yG---~geI~Qaf~RlaAv-~Gg~y~L~~~V~~I~~~~~~~~~g-V~-~-~ge--~i~a~~VV~~~~ 212 (370)
.|..| .+.|.++|++.+.. .|++++++++|..|..++++.+.. ++ + +|+ .++||+||..+.
T Consensus 175 ~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAG 244 (497)
T PRK13339 175 IDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAG 244 (497)
T ss_pred CCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCC
Confidence 45444 45899999999964 489999999999987653444322 21 3 342 689999985443
No 91
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=69.22 E-value=12 Score=39.40 Aligned_cols=50 Identities=24% Similarity=0.314 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEE
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
+|.+++.+.+...|+.++.++.+.+++.+ +|++.||.. +|+ .++|+.||.
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVl 185 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVL 185 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEE
Confidence 78888988888889999999999999885 689999863 464 579999885
No 92
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=68.84 E-value=11 Score=39.13 Aligned_cols=65 Identities=23% Similarity=0.368 Sum_probs=54.9
Q ss_pred CCCceeec-CCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEECC
Q 017499 146 GGSPYIYP-LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDP 211 (370)
Q Consensus 146 G~sPflyp-~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~~ 211 (370)
.+.|.+.| .+| -+|.|....+-+..|..+.+++.+.++.-+++|++..|.. +|.++.||.||..-
T Consensus 243 ~~e~~~~~~lf~-~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~Gi 309 (478)
T KOG1336|consen 243 FPEPWLLPRLFG-PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGI 309 (478)
T ss_pred ccCccchhhhhh-HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEee
Confidence 35555566 333 6899999999999999999999999998877899999985 89999999999743
No 93
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=67.91 E-value=15 Score=36.48 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=41.0
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDP 211 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~ 211 (370)
.++.+.+.+.+...|+.++.++.|.++..+ ++.+ .|. .+|+.+.||.||+..
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v-~v~~~~g~~~~ad~vI~Ad 163 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETR-DEGV-TVTLSDGSVLEARLLVAAD 163 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCEE-EEEECCCCEEEeCEEEEcC
Confidence 578889988888889999999999998764 3333 354 478899999999643
No 94
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=67.51 E-value=17 Score=38.54 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=42.8
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEE
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
.+|.++|.+.+...|+.++.++.|.+++.+ +|++.||.. +|+ .++|+.||.
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVl 191 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMF 191 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEE
Confidence 479999999888899999999999999875 788988862 454 579999985
No 95
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=66.94 E-value=15 Score=39.07 Aligned_cols=52 Identities=19% Similarity=0.154 Sum_probs=43.0
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCC---CcEEEEEe----CCe--EEEcCEEEE
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEE---GKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~---~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
.+|.+++.+.+...|+.+..++.|.+++.+++ |++.||.. +|+ .++|+.||.
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVL 200 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVF 200 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEE
Confidence 37889999988889999999999999987643 89999963 455 578999885
No 96
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=66.28 E-value=16 Score=35.76 Aligned_cols=58 Identities=29% Similarity=0.311 Sum_probs=43.4
Q ss_pred ecCCC---CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECC
Q 017499 152 YPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDP 211 (370)
Q Consensus 152 yp~yG---~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~ 211 (370)
.|..| ...+.+++.+.+...|+.+.++++|.++..+ ++. ..|.+++..++||+||...
T Consensus 140 ~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~~a~~vV~A~ 200 (376)
T PRK11259 140 EPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD-GDG-VTVTTADGTYEAKKLVVSA 200 (376)
T ss_pred cCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CCe-EEEEeCCCEEEeeEEEEec
Confidence 55555 2467888888888899999999999999874 343 4576654478999988543
No 97
>PRK07190 hypothetical protein; Provisional
Probab=66.22 E-value=14 Score=38.41 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=42.2
Q ss_pred CCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEEC
Q 017499 155 YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCD 210 (370)
Q Consensus 155 yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~ 210 (370)
.+...+-+.+.+.++..|+.+..++.|.++..++++ +.....+|++++||+||+.
T Consensus 106 ~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-v~v~~~~g~~v~a~~vVgA 160 (487)
T PRK07190 106 LGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG-CLTTLSNGERIQSRYVIGA 160 (487)
T ss_pred cCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-eEEEECCCcEEEeCEEEEC
Confidence 345567778888888899999999999999876444 3333357889999999963
No 98
>PRK07804 L-aspartate oxidase; Provisional
Probab=65.36 E-value=14 Score=38.84 Aligned_cols=52 Identities=21% Similarity=0.174 Sum_probs=42.8
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe--------CC-eEEEcCEEEE
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--------EG-ETAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~--------~g-e~i~a~~VV~ 209 (370)
.+|.++|-+.+...|+.++.++.|.+++.+++|++.||.. +| ..++|+.||.
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIl 204 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVL 204 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEE
Confidence 3799999999889999999999999998865578999864 12 4689999884
No 99
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=65.04 E-value=23 Score=36.36 Aligned_cols=55 Identities=24% Similarity=0.343 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CC--eEEEcCEEEEC-CCCC
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCD-PSYL 214 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~g--e~i~a~~VV~~-~~y~ 214 (370)
++.+++-+.....|+++++++.|.++..+ ++++..|.. +| +.++||.||.. ..++
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence 88999999999999999999999999875 566777654 44 45899988754 4443
No 100
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=65.02 E-value=18 Score=35.87 Aligned_cols=51 Identities=12% Similarity=0.071 Sum_probs=40.9
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEEC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~ 210 (370)
.++-+++.+.+...|++++.++.|.++..+ ++.+ .|.. +|+++.||.||..
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~a~~vV~A 164 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQD-ADRV-RLRLDDGRRLEAALAIAA 164 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEec-CCeE-EEEECCCCEEEeCEEEEe
Confidence 578889988888899999999999999865 3333 3554 7889999999953
No 101
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=64.52 E-value=17 Score=35.69 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=39.8
Q ss_pred CCcHHHHHHHHHHHh-CcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEE
Q 017499 157 LGELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVC 209 (370)
Q Consensus 157 ~geI~Qaf~RlaAv~-Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~ 209 (370)
-.++-+.+.+.+... |+++++++.|.++..++ +.+ .|. .+|+.++||.||.
T Consensus 104 r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~-~~~-~v~~~~g~~~~ad~vV~ 156 (382)
T TIGR01984 104 LADLGQALLSRLALLTNIQLYCPARYKEIIRNQ-DYV-RVTLDNGQQLRAKLLIA 156 (382)
T ss_pred cHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC-CeE-EEEECCCCEEEeeEEEE
Confidence 357899998888874 99999999999997653 333 344 3788899999995
No 102
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=63.88 E-value=18 Score=38.59 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEE
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
+|.+.+-+.+...|+.++.++.+.+++.+++|++.||.. +|+ .++||.||.
T Consensus 149 ~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVIL 205 (591)
T PRK07057 149 ALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLF 205 (591)
T ss_pred HHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEE
Confidence 688888888888999999999999998865689999864 354 578999885
No 103
>PRK06116 glutathione reductase; Validated
Probab=62.83 E-value=24 Score=35.91 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=44.2
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~~y~p~ 216 (370)
.++.+.+-+.....|..+++++.|.+|.-++++.+ .|. .+|+.+.||.||.....-|.
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPN 266 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcC
Confidence 46777787888889999999999999976444433 344 37889999999986655553
No 104
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=62.10 E-value=19 Score=38.81 Aligned_cols=51 Identities=10% Similarity=0.221 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEE
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
+|.+++.+.+...|+.+..++.+.+++.+++|++.||.. +|+ .++||.||.
T Consensus 188 ~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVIL 244 (635)
T PLN00128 188 AMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTIL 244 (635)
T ss_pred HHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEE
Confidence 688999988888899999999999998865689999874 354 578999885
No 105
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=61.96 E-value=22 Score=38.16 Aligned_cols=51 Identities=14% Similarity=0.033 Sum_probs=38.4
Q ss_pred cHHHHHHHHHHH----hCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEE
Q 017499 159 ELPQAFARLSAV----YGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv----~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
+|..++.+.+.. .|+.++.++.+.+++.+++|++.||.. +|+ .++||.||.
T Consensus 130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVL 190 (603)
T TIGR01811 130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVIL 190 (603)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEE
Confidence 676666554433 479999999999999875679999974 343 578999884
No 106
>PRK07512 L-aspartate oxidase; Provisional
Probab=61.60 E-value=20 Score=37.46 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=40.8
Q ss_pred cHHHHHHHHHHHh-CcEEEcCCccceEEEcCCCcEEEEEe--CCe--EEEcCEEEE
Q 017499 159 ELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv~-Gg~y~L~~~V~~I~~~~~~~~~gV~~--~ge--~i~a~~VV~ 209 (370)
+|.+++.+.+... |+.++.++.|.++..+ +|++.||.. +++ .++||.||.
T Consensus 137 ~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVL 191 (513)
T PRK07512 137 AIMRALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAATAGGPVVLPARAVVL 191 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEeCCeEEEEECCEEEE
Confidence 7999998888765 8999999999998764 689999874 343 588999885
No 107
>PRK06175 L-aspartate oxidase; Provisional
Probab=61.23 E-value=22 Score=36.29 Aligned_cols=50 Identities=8% Similarity=0.046 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHH-hCcEEEcCCccceEEEcCCCcEEEEE-e-CCe--EEEcCEEEE
Q 017499 159 ELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVT-S-EGE--TAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv-~Gg~y~L~~~V~~I~~~~~~~~~gV~-~-~ge--~i~a~~VV~ 209 (370)
++.+++-+.++. .|+.++.++.+.+|+.+ ++++.||. . +|+ .++||.||.
T Consensus 129 ~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VIL 183 (433)
T PRK06175 129 KVEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTIL 183 (433)
T ss_pred HHHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEE
Confidence 688888866654 59999999999999875 68888975 2 454 589998885
No 108
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=59.90 E-value=21 Score=37.87 Aligned_cols=50 Identities=20% Similarity=0.117 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEE
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
+|.+++.+.+...|+.+..++.+.+++.+ +|+++||.. +|+ .++||.||.
T Consensus 137 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVL 192 (566)
T PRK06452 137 ALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVL 192 (566)
T ss_pred HHHHHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEE
Confidence 68888888777789999999999999985 799999974 233 578999885
No 109
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=59.70 E-value=1.1e+02 Score=32.12 Aligned_cols=83 Identities=13% Similarity=0.175 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHhhhcccCCCceeecCCC-CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCC---CcEEEEEe--CCe
Q 017499 127 ALDTVKRMKLYAESIARFQGGSPYIYPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEE---GKVVGVTS--EGE 200 (370)
Q Consensus 127 ~~~~l~ri~~yl~S~g~y~G~sPflyp~yG-~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~---~~~~gV~~--~ge 200 (370)
+.|.=..++||+.-+...+--+......|= .-.|..=+.|.-...|+.|.+|+.|+.|.++.+ ..+.++.. +|+
T Consensus 175 a~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~ 254 (500)
T PF06100_consen 175 AVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGK 254 (500)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCC
Confidence 444433444555544444225667788888 457999999999999999999999999998632 34556653 443
Q ss_pred E--E---EcCEEEE
Q 017499 201 T--A---KCKKVVC 209 (370)
Q Consensus 201 ~--i---~a~~VV~ 209 (370)
. + .-|.|+.
T Consensus 255 ~~~i~l~~~DlV~v 268 (500)
T PF06100_consen 255 EETIDLGPDDLVFV 268 (500)
T ss_pred eeEEEeCCCCEEEE
Confidence 2 2 3466653
No 110
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=59.61 E-value=22 Score=35.53 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=55.2
Q ss_pred HHHHHHhhhccc-CCCceeecCCCC---CcHHHHHHHHHHHhCcEEEcCCccceEEE-cCCCcEEEEEe-CCeEEEcCEE
Q 017499 134 MKLYAESIARFQ-GGSPYIYPLYGL---GELPQAFARLSAVYGGTYMLNKPECKVEF-DEEGKVVGVTS-EGETAKCKKV 207 (370)
Q Consensus 134 i~~yl~S~g~y~-G~sPflyp~yG~---geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~-~~~~~~~gV~~-~ge~i~a~~V 207 (370)
+++.+-+.++.+ |--.++=+++|. ..-..+|--.++.+||+++-|..|..+.. ++++...+|.+ +|..+.||.+
T Consensus 125 vrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akki 204 (399)
T KOG2820|consen 125 VRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKI 204 (399)
T ss_pred HHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceE
Confidence 555555444443 344455566772 24567788899999999999999998874 45677788885 8999999988
Q ss_pred EEC
Q 017499 208 VCD 210 (370)
Q Consensus 208 V~~ 210 (370)
|..
T Consensus 205 I~t 207 (399)
T KOG2820|consen 205 IFT 207 (399)
T ss_pred EEE
Confidence 853
No 111
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=59.38 E-value=20 Score=37.79 Aligned_cols=52 Identities=17% Similarity=0.136 Sum_probs=41.4
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEE
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
.+|...+...+...|+.+.+++.+.+++.+++++++||.. +|+ .++|+.||.
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIl 191 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATIL 191 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEE
Confidence 4788888887777999999999999998865456998862 454 578999885
No 112
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=59.24 E-value=25 Score=37.05 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=39.3
Q ss_pred cHHHHHHHHHH----HhCcEEEcCCccceEEEcCCCcEEEEEe---C---------------C-eEEEcCEEEE-CCCCC
Q 017499 159 ELPQAFARLSA----VYGGTYMLNKPECKVEFDEEGKVVGVTS---E---------------G-ETAKCKKVVC-DPSYL 214 (370)
Q Consensus 159 eI~Qaf~RlaA----v~Gg~y~L~~~V~~I~~~~~~~~~gV~~---~---------------g-e~i~a~~VV~-~~~y~ 214 (370)
+|.++|-+.+. ..|+.+++++++.+++.+ +|+|+||.. . + ..++||.||. ...|-
T Consensus 149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~-~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~ 227 (549)
T PRK12834 149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVT-DGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIG 227 (549)
T ss_pred HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEe-CCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcc
Confidence 57777765543 235899999999999885 799999973 1 1 3578998774 44443
No 113
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=58.94 E-value=24 Score=33.62 Aligned_cols=52 Identities=27% Similarity=0.320 Sum_probs=39.7
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe---CCe--EEEcCEEEEC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~---~ge--~i~a~~VV~~ 210 (370)
.++-+.+...++..|+.+.+++.|..+..+.++ +..+.. +|+ ++.||.||+.
T Consensus 111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~-~~~~~~~~~~g~~~~i~adlvVgA 167 (356)
T PF01494_consen 111 PELDRALREEAEERGVDIRFGTRVVSIEQDDDG-VTVVVRDGEDGEEETIEADLVVGA 167 (356)
T ss_dssp HHHHHHHHHHHHHHTEEEEESEEEEEEEEETTE-EEEEEEETCTCEEEEEEESEEEE-
T ss_pred HHHHHhhhhhhhhhhhhheeeeecccccccccc-cccccccccCCceeEEEEeeeecc
Confidence 478889999999999999999999998876443 443332 343 6899999964
No 114
>PRK08163 salicylate hydroxylase; Provisional
Probab=58.89 E-value=22 Score=35.21 Aligned_cols=51 Identities=10% Similarity=0.043 Sum_probs=39.1
Q ss_pred CcHHHHHHHHHHHhC-cEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEEC
Q 017499 158 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv~G-g~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~ 210 (370)
.+|-+.+.+.+...| ++++.++.|.++..+ ++.+. |. .+|+++.||.||..
T Consensus 109 ~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v~-v~~~~g~~~~ad~vV~A 161 (396)
T PRK08163 109 ADIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGVT-VFDQQGNRWTGDALIGC 161 (396)
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCceE-EEEcCCCEEecCEEEEC
Confidence 468889988887776 789999999998764 33333 44 47889999999964
No 115
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=58.62 E-value=25 Score=37.95 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEE
Q 017499 162 QAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 162 Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
+.|.+.+...|+.++.++.+.+++.+ +|++.||.. +|+ .+.||.||.
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVL 226 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVL 226 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEE
Confidence 56666677789999999999999885 689999974 354 578999885
No 116
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=58.29 E-value=29 Score=36.32 Aligned_cols=54 Identities=22% Similarity=0.424 Sum_probs=39.8
Q ss_pred cHHHHHHHHHHHh-CcEEEcCCccceEEEcCCCcEEEEEe--CCe--EEEcC--EEEECCCC
Q 017499 159 ELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCK--KVVCDPSY 213 (370)
Q Consensus 159 eI~Qaf~RlaAv~-Gg~y~L~~~V~~I~~~~~~~~~gV~~--~ge--~i~a~--~VV~~~~y 213 (370)
.+...+-+.++.. |+++++++++.+++.+ +++++||.. +|+ .++|+ .|++...|
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~-~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~ 234 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVE-DGRVVGAVVERGGERRRVRARRGVLLAAGGF 234 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEec-CCEEEEEEEEECCcEEEEEeCceEEEeCCCc
Confidence 5777777666664 9999999999999875 789999974 443 47886 44455444
No 117
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=57.71 E-value=23 Score=26.81 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=33.2
Q ss_pred CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CC
Q 017499 157 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG 199 (370)
Q Consensus 157 ~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~g 199 (370)
-.++.+.+.+..+..|..+++|+.|++|.-++++ +. |+. ||
T Consensus 39 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~~~g 80 (80)
T PF00070_consen 39 DPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTLEDG 80 (80)
T ss_dssp SHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEEETS
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEEecC
Confidence 3577888888888999999999999999987666 66 764 54
No 118
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=57.41 E-value=25 Score=34.39 Aligned_cols=51 Identities=18% Similarity=0.151 Sum_probs=40.8
Q ss_pred CCcHHHHHHHHHHHhC-cEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEE
Q 017499 157 LGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVC 209 (370)
Q Consensus 157 ~geI~Qaf~RlaAv~G-g~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~ 209 (370)
-.++-+.+...+...| ++++.++.|.++..+ ++.+ .|. .+|+.+.||.||.
T Consensus 105 r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~-~v~~~~g~~~~~~~vi~ 157 (385)
T TIGR01988 105 NRVLQQALWERLQEYPNVTLLCPARVVELPRH-SDHV-ELTLDDGQQLRARLLVG 157 (385)
T ss_pred cHHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCee-EEEECCCCEEEeeEEEE
Confidence 4578888988888888 999999999999765 3444 355 4788999999995
No 119
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=57.10 E-value=37 Score=33.59 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=43.6
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~~y~p~ 216 (370)
.++.+.+.+.....|..+++++.|.++.-+ ++ ...|. .+|+.+.||.||.....-|.
T Consensus 183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~-~~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 183 PEVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DS-GIRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred HHHHHHHHHHHHhCCCEEEECCeEEEEEcc-CC-EEEEEEcCCcEEECCEEEECcCCCcc
Confidence 456677777788899999999999998754 22 23455 47899999999988776664
No 120
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=57.05 E-value=23 Score=36.72 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=41.6
Q ss_pred CcHHHHHHHHHHH-hCcEEEcCCccceEEEcCCCcEEEEEe-C-C--eEEEcCEEEE
Q 017499 158 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-E-G--ETAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv-~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~-g--e~i~a~~VV~ 209 (370)
.+|.+++.+.+.. .|..++.++.|.++..+ ++++.||.. + + ..++|+.||.
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVl 183 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVL 183 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEE
Confidence 4788999888877 69999999999999875 678898875 2 3 4689999885
No 121
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=56.12 E-value=31 Score=36.50 Aligned_cols=57 Identities=21% Similarity=0.342 Sum_probs=43.6
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe--CCe--EEEcC-EEE-ECCCCCC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCK-KVV-CDPSYLP 215 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~--~ge--~i~a~-~VV-~~~~y~p 215 (370)
..+.+.+-+.++..|+++++++.+.+++.+ ++++.||.. +|+ .++|+ .|| +...|-+
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~-~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVE-DGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEe-CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 357788888888899999999999999875 688999875 454 47886 355 4666654
No 122
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=55.91 E-value=29 Score=34.62 Aligned_cols=59 Identities=20% Similarity=0.084 Sum_probs=46.4
Q ss_pred ecCCCCCcHHHHHHHHHHHhC-cEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEECC
Q 017499 152 YPLYGLGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDP 211 (370)
Q Consensus 152 yp~yG~geI~Qaf~RlaAv~G-g~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~~ 211 (370)
.-...-.+|-+++-..+...| .+++.++.|+.+..+ ++.+..... +|++++||.||+-.
T Consensus 98 ~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~v~l~~dG~~~~a~llVgAD 158 (387)
T COG0654 98 GYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVTVTLSFDGETLDADLLVGAD 158 (387)
T ss_pred eEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceEEEEcCCCcEEecCEEEECC
Confidence 334456799999999998877 799999999999875 355563345 89999999999643
No 123
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=55.43 E-value=36 Score=37.71 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=44.6
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCCCc
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~~~y~p~ 216 (370)
++.+.+-+..+..|..+++++.|.+|.- +++..+|.. +|+.+.||.||..+..-|.
T Consensus 183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 183 TAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 4556667777889999999999988853 456677774 8999999999998877764
No 124
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=54.76 E-value=25 Score=34.37 Aligned_cols=57 Identities=23% Similarity=0.135 Sum_probs=40.4
Q ss_pred ceeecCCC---CCcHHHHHHHHHHHh-CcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECC
Q 017499 149 PYIYPLYG---LGELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDP 211 (370)
Q Consensus 149 Pflyp~yG---~geI~Qaf~RlaAv~-Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~ 211 (370)
.+.+|..| ...+.+++.+.++.. |+.+..+++|.+|.. + +|.+++..++||+||...
T Consensus 133 ~~~~~~~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~g~i~a~~VV~A~ 193 (365)
T TIGR03364 133 GLHSPDELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET---G---TVRTSRGDVHADQVFVCP 193 (365)
T ss_pred EEEcCCCeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C---eEEeCCCcEEeCEEEECC
Confidence 34466656 346788898887764 999999999998852 2 566654457899888543
No 125
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=53.74 E-value=41 Score=37.65 Aligned_cols=70 Identities=10% Similarity=0.016 Sum_probs=50.0
Q ss_pred CCceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 017499 147 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 147 ~sPflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~~y~p~ 216 (370)
.+|.+.|..=-.+..+.+-+..+..|..+++++.|++|.-+.++....|. .+|+.+.||.||..+..-|.
T Consensus 176 ~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn 246 (847)
T PRK14989 176 FAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQ 246 (847)
T ss_pred ccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccC
Confidence 34544443223355667777788899999999999999643234455666 48999999999988777764
No 126
>PRK08071 L-aspartate oxidase; Provisional
Probab=53.59 E-value=24 Score=36.84 Aligned_cols=49 Identities=18% Similarity=0.191 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe---CCe--EEEcCEEEE
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~---~ge--~i~a~~VV~ 209 (370)
+|.+++-+.+. .|+.++.++.|.++..+ ++++.||.. +|+ .++||.||.
T Consensus 131 ~i~~~L~~~~~-~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~g~~~~i~Ak~VVl 184 (510)
T PRK08071 131 NLLEHLLQELV-PHVTVVEQEMVIDLIIE-NGRCIGVLTKDSEGKLKRYYADYVVL 184 (510)
T ss_pred HHHHHHHHHHh-cCCEEEECeEhhheeec-CCEEEEEEEEECCCcEEEEEcCeEEE
Confidence 58888887665 79999999999999875 788999875 333 578999885
No 127
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=53.52 E-value=34 Score=35.56 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=40.1
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CC----eEEEcCEEEECC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG----ETAKCKKVVCDP 211 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~g----e~i~a~~VV~~~ 211 (370)
..+.+++.+.+...|+.+..++.|.++..+ +...+|.+ ++ ..++|+.||.-.
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~--~~~~~v~~~~~~g~~~~i~a~~VVnAa 211 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARRE--GGLWRVETRDADGETRTVRARALVNAA 211 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEc--CCEEEEEEEeCCCCEEEEEecEEEECC
Confidence 577888889999999999999999998864 33455654 33 358999999543
No 128
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=53.36 E-value=31 Score=34.04 Aligned_cols=50 Identities=24% Similarity=0.165 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEE
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~ 209 (370)
.++-+++.+.++.+|++-+.++.|.++..++ +.+. |. .+|+++.||.||.
T Consensus 111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~-~~~~-v~~~~g~~~~a~~vI~ 161 (388)
T PRK07494 111 WLLNRALEARVAELPNITRFGDEAESVRPRE-DEVT-VTLADGTTLSARLVVG 161 (388)
T ss_pred HHHHHHHHHHHhcCCCcEEECCeeEEEEEcC-CeEE-EEECCCCEEEEeEEEE
Confidence 5788999998888887778999999987653 3333 54 3788999999995
No 129
>PRK06834 hypothetical protein; Provisional
Probab=53.34 E-value=35 Score=35.42 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=40.0
Q ss_pred CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEE
Q 017499 157 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVC 209 (370)
Q Consensus 157 ~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~ 209 (370)
...+-+.+.+.++..|+.++.++.|.++..++++ + .|. .+|++++||+||.
T Consensus 99 q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-v-~v~~~~g~~i~a~~vVg 150 (488)
T PRK06834 99 QNHIERILAEWVGELGVPIYRGREVTGFAQDDTG-V-DVELSDGRTLRAQYLVG 150 (488)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEE
Confidence 3567788888888899999999999999875333 3 244 3678999999985
No 130
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=53.32 E-value=34 Score=34.06 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=38.5
Q ss_pred CCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE--eCCe--EEEcCEEEEC
Q 017499 155 YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT--SEGE--TAKCKKVVCD 210 (370)
Q Consensus 155 yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~--~~ge--~i~a~~VV~~ 210 (370)
|+-.++-+.+.+.++..|+.++.++.+.++.-. ++....|. .+|+ +++||+||+.
T Consensus 100 ~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~-~~~~~~V~~~~~G~~~~i~ad~vVgA 158 (392)
T PRK08243 100 YGQTEVTRDLMAARLAAGGPIRFEASDVALHDF-DSDRPYVTYEKDGEEHRLDCDFIAGC 158 (392)
T ss_pred eCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEec-CCCceEEEEEcCCeEEEEEeCEEEEC
Confidence 344577788888888889999999999888641 22223343 3664 6899999963
No 131
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=53.25 E-value=38 Score=35.29 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=46.8
Q ss_pred eecCCC----CCcHHHHHHHHHHHh-CcEEEcCCccceEEEcCCCc-EEEEE---e-CCeEEEcCEEEECCC
Q 017499 151 IYPLYG----LGELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGK-VVGVT---S-EGETAKCKKVVCDPS 212 (370)
Q Consensus 151 lyp~yG----~geI~Qaf~RlaAv~-Gg~y~L~~~V~~I~~~~~~~-~~gV~---~-~ge~i~a~~VV~~~~ 212 (370)
.+...| -|+|.+.|.+..... |...+||+.|++|.-..+|+ ...|+ + +...++|+.|+.++.
T Consensus 170 t~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAG 241 (488)
T PF06039_consen 170 TRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAG 241 (488)
T ss_pred eecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCc
Confidence 355566 379999999999888 99999999999999766663 22232 1 346789999987653
No 132
>PRK07395 L-aspartate oxidase; Provisional
Probab=52.71 E-value=33 Score=36.37 Aligned_cols=52 Identities=8% Similarity=0.143 Sum_probs=41.1
Q ss_pred CcHHHHHHHHHHHh-CcEEEcCCccceEEEcC-CCcEEEEEe--CCeE--EEcCEEEE
Q 017499 158 GELPQAFARLSAVY-GGTYMLNKPECKVEFDE-EGKVVGVTS--EGET--AKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~-Gg~y~L~~~V~~I~~~~-~~~~~gV~~--~ge~--i~a~~VV~ 209 (370)
.+|..++.+.+... |+.++.++.+.+++.++ +|++.||.. +|+. ++|+.||.
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVIL 191 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVIL 191 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEE
Confidence 36888888877654 89999999999998863 489999974 5653 78998884
No 133
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=52.22 E-value=29 Score=37.37 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=46.9
Q ss_pred CCceeecCCC-C--CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEE-CCCCC
Q 017499 147 GSPYIYPLYG-L--GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVC-DPSYL 214 (370)
Q Consensus 147 ~sPflyp~yG-~--geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~-~~~y~ 214 (370)
..|.++..+| . -.+.+++-+.+.-++++-++...|.++..++++++.||.+ +|..+.|+.||. ...++
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 3455544444 1 2466778777888866666777888887654688999986 788899999885 34443
No 134
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=52.19 E-value=35 Score=35.62 Aligned_cols=62 Identities=19% Similarity=0.160 Sum_probs=44.4
Q ss_pred eeecCCC--CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEECCCC
Q 017499 150 YIYPLYG--LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY 213 (370)
Q Consensus 150 flyp~yG--~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~~~~y 213 (370)
|.|+-+- ...+.+++.+.|...|+++..+++|.++..+ ++ ..+|.+ +|+ .++||.||.....
T Consensus 145 ~~~~dg~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~~g~~~~i~a~~VVnAaG~ 214 (508)
T PRK12266 145 FEYSDCWVDDARLVVLNARDAAERGAEILTRTRVVSARRE-NG-LWHVTLEDTATGKRYTVRARALVNAAGP 214 (508)
T ss_pred EEEcCcccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CC-EEEEEEEEcCCCCEEEEEcCEEEECCCc
Confidence 4454332 3578889999999999999999999998764 33 345543 253 6899999965443
No 135
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=51.93 E-value=43 Score=34.09 Aligned_cols=57 Identities=23% Similarity=0.176 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~~y~p~ 216 (370)
.++.+.+.+..+..|..+++++.|.++..+ ++.+. +. .+|+.+.||.||.....-|.
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~-~~~~~-v~~~~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGG-DDGVI-VHLKSGKKIKADCLLYANGRTGN 273 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEe-CCeEE-EEECCCCEEEeCEEEEeecCCcc
Confidence 578889999889999999999999998754 33332 33 47889999999976655553
No 136
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=51.88 E-value=4.8 Score=41.02 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-C---CeEEEcCEEE
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E---GETAKCKKVV 208 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~---ge~i~a~~VV 208 (370)
..-+.|-++++..|+++++++.|.++..+ ++++++|.. + ..+++||.||
T Consensus 91 ~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g~~~i~A~~~I 143 (428)
T PF12831_consen 91 VFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSGRKEIRAKVFI 143 (428)
T ss_dssp ------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 34455666678899999999999999985 788999985 2 5678999988
No 137
>PRK06184 hypothetical protein; Provisional
Probab=51.85 E-value=39 Score=34.95 Aligned_cols=51 Identities=18% Similarity=0.134 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE---eCCeEEEcCEEEE
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT---SEGETAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~---~~ge~i~a~~VV~ 209 (370)
..+-+.+...+...|+.+.+++.|.++..++++ +.... .++++++||+||.
T Consensus 109 ~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v~v~~~~~~~~~~i~a~~vVg 162 (502)
T PRK06184 109 WRTERILRERLAELGHRVEFGCELVGFEQDADG-VTARVAGPAGEETVRARYLVG 162 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-EEEEEEeCCCeEEEEeCEEEE
Confidence 356677888788889999999999999875443 33322 3567899999995
No 138
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=51.78 E-value=31 Score=37.18 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=45.1
Q ss_pred ceeecCCCC---CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEE-ECCCCC
Q 017499 149 PYIYPLYGL---GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVV-CDPSYL 214 (370)
Q Consensus 149 Pflyp~yG~---geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV-~~~~y~ 214 (370)
|.++..++. ....+++-+.++..+++-++...|.++..+ ++++.||.+ +|..+.|+.|| ++..++
T Consensus 88 pAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e-~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 88 PAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVE-NGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred CceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEec-CCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 555544432 235667766677676655678889888875 788999986 78999999977 455444
No 139
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=51.23 E-value=31 Score=34.34 Aligned_cols=53 Identities=23% Similarity=0.291 Sum_probs=36.0
Q ss_pred CcHHHHHHHHHHHh-CcEEEcCCccceEEEcCCCcEEEEEeCC--eEEEcCEEEEC
Q 017499 158 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTSEG--ETAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv~-Gg~y~L~~~V~~I~~~~~~~~~gV~~~g--e~i~a~~VV~~ 210 (370)
.++-+.+.+.++.. |..++.++.|.++..++++....+..+| .+++||.||+.
T Consensus 121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgA 176 (415)
T PRK07364 121 QVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAA 176 (415)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEe
Confidence 45777777766665 6889999999998765433222332233 46999999953
No 140
>PLN02697 lycopene epsilon cyclase
Probab=50.92 E-value=37 Score=35.87 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEE
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~ 209 (370)
++-+.+.+.|+..|+++ +++.|.+|..+ ++.+..+. .+|+.++|+.||.
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~-~~~~~vv~~~dG~~i~A~lVI~ 242 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEA-SDGLRLVACEDGRVIPCRLATV 242 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEc-CCcEEEEEEcCCcEEECCEEEE
Confidence 56788888888889998 88899988764 34444344 4788999999995
No 141
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=50.87 E-value=49 Score=33.11 Aligned_cols=57 Identities=21% Similarity=0.148 Sum_probs=42.4
Q ss_pred CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 017499 157 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 157 ~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~~y~p~ 216 (370)
..++.+.+-+.....|..+++++.|.++.- ++. ..|. .+|+.+.||.||.....-|.
T Consensus 185 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 185 PPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECCCCEEECCEEEECCCCChh
Confidence 345666677777889999999999998853 233 3354 47899999999987766654
No 142
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=50.61 E-value=44 Score=32.71 Aligned_cols=60 Identities=30% Similarity=0.340 Sum_probs=45.1
Q ss_pred eecCCCC---CcHHHHHHHHHHHhC-cEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCC
Q 017499 151 IYPLYGL---GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS 212 (370)
Q Consensus 151 lyp~yG~---geI~Qaf~RlaAv~G-g~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~ 212 (370)
.+|..|. ..+.++++..+...| ..+..++++..+..+ . +..+|.+++..+.|+.||....
T Consensus 146 ~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~i~a~~vv~a~G 209 (387)
T COG0665 146 FDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGTIEADKVVLAAG 209 (387)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCccEEeCEEEEcCc
Confidence 3666662 478999999999999 455558899888754 3 7788888655599999886544
No 143
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=49.17 E-value=50 Score=32.29 Aligned_cols=58 Identities=29% Similarity=0.369 Sum_probs=47.5
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEE---EEEeCCeEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVV---GVTSEGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~---gV~~~ge~i~a~~VV~~~~y~p~ 216 (370)
.++++.+.+.-..+|..+++++.+.+|..+ +++.. .+..+++.+++|.++..+-.-|+
T Consensus 178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 178 PEVAEELAELLEKYGVELLLGTKVVGVEGK-GNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCceEEEEcc-cCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 589999999999999999999999999864 33333 34468999999999988877664
No 144
>PRK06185 hypothetical protein; Provisional
Probab=49.06 E-value=49 Score=32.84 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=39.0
Q ss_pred CcHHHHHHHHHHHh-CcEEEcCCccceEEEcCCCcEEEEEe---CCe-EEEcCEEEEC
Q 017499 158 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS---EGE-TAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv~-Gg~y~L~~~V~~I~~~~~~~~~gV~~---~ge-~i~a~~VV~~ 210 (370)
.++-+.+-+.++.. |+++..++.|.++..+ ++++.+|.. +|+ +++||.||..
T Consensus 108 ~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A 164 (407)
T PRK06185 108 WDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA 164 (407)
T ss_pred HHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence 46777777766665 7899999999999875 566766653 564 7999999963
No 145
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=48.82 E-value=62 Score=32.90 Aligned_cols=66 Identities=24% Similarity=0.208 Sum_probs=47.2
Q ss_pred CCceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCC--eEEEcCEEEECCCCCC
Q 017499 147 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEG--ETAKCKKVVCDPSYLP 215 (370)
Q Consensus 147 ~sPflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~g--e~i~a~~VV~~~~y~p 215 (370)
..|.+.|. --.++.+.+.+..+..|..+++++.|.+|..+ ++++. +. .+| +.+.+|.||......|
T Consensus 201 ~~~~~l~~-~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 201 MLDRILPG-EDAEVSKVVAKALKKKGVKILTNTKVTAVEKN-DDQVV-YENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred cCCCCCCC-CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEEE-EEEeCCcEEEEEeCEEEEecCCcc
Confidence 34444442 24578888888888999999999999999764 34443 44 356 5799999997665555
No 146
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=48.32 E-value=31 Score=36.50 Aligned_cols=64 Identities=25% Similarity=0.236 Sum_probs=51.3
Q ss_pred ceeecCCC--CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-C---Ce--EEEcCEEEECCCCC
Q 017499 149 PYIYPLYG--LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E---GE--TAKCKKVVCDPSYL 214 (370)
Q Consensus 149 Pflyp~yG--~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~---ge--~i~a~~VV~~~~y~ 214 (370)
.|.|+-+= -..|.=.-.+-|+.+|++....++|+++..+ +| ++||+. | |+ .++|+.||-..--.
T Consensus 153 a~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW 224 (532)
T COG0578 153 AFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPW 224 (532)
T ss_pred eEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCcc
Confidence 77788775 4588999999999999999999999999875 55 999985 2 44 37999999654433
No 147
>PRK08244 hypothetical protein; Provisional
Probab=48.29 E-value=46 Score=34.29 Aligned_cols=53 Identities=21% Similarity=0.189 Sum_probs=38.6
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CC-eEEEcCEEEEC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG-ETAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~g-e~i~a~~VV~~ 210 (370)
.++-+.+-+.++..|+.++.++.|.++..++++....+.. +| ++++||+||.-
T Consensus 100 ~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgA 154 (493)
T PRK08244 100 AETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGA 154 (493)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEEC
Confidence 4677788888888899999999999997654332223332 45 57999999953
No 148
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=46.11 E-value=54 Score=35.14 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHHHhC-cEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEE
Q 017499 158 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~G-g~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
..+.+++.+.+...| +.++.++.|.++..+ ++++.||.. +|+ .+.||.||.
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIL 189 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIV 189 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECCEEEE
Confidence 367778877776665 999999999999875 678888852 454 689998885
No 149
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=45.91 E-value=67 Score=32.76 Aligned_cols=66 Identities=27% Similarity=0.243 Sum_probs=46.9
Q ss_pred CceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCC---eEEEcCEEEECCCCCCc
Q 017499 148 SPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEG---ETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 148 sPflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~g---e~i~a~~VV~~~~y~p~ 216 (370)
.|.+.|..+ .++.+.+.+..+..|..+++|+.|.+|.-+ ++.+ .+. .+| +.+.||.||.....-|.
T Consensus 204 ~~~~l~~~~-~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~~v-~v~~~~gg~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 204 LPRILPGED-KEISKLAERALKKRGIKIKTGAKAKKVEQT-DDGV-TVTLEDGGKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred CCCcCCcCC-HHHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEE-EEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence 444455432 478888888889999999999999999754 3333 343 355 67999999986655553
No 150
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=45.59 E-value=54 Score=32.61 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEE
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~ 209 (370)
..+-+++.+.++..|+.++.++.|.++..++++ + .|. .+|+++.||.||+
T Consensus 112 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~vVg 162 (405)
T PRK05714 112 RVVQDALLERLHDSDIGLLANARLEQMRRSGDD-W-LLTLADGRQLRAPLVVA 162 (405)
T ss_pred HHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEE
Confidence 367778888777789999999999998765333 3 354 4788999999995
No 151
>cd02851 Galactose_oxidase_C_term Galactose oxidase C-terminus domain. Galactose oxidase is an extracellular monomeric enzyme which catalyses the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalysing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminus of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=44.64 E-value=40 Score=27.54 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=27.0
Q ss_pred CCeEEEEeCCCccCCCCCEEEEEecCCccccCCCcEEEEEEe
Q 017499 241 SHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFVST 282 (370)
Q Consensus 241 ~~s~~ii~P~~~~~~~~~v~v~~~~~~~~~cP~G~~i~~~st 282 (370)
.++..|.++....+ ...|.+.+-.+.+++|+|+|.+++-.
T Consensus 48 ~~QR~v~L~~~~~~--~~~~~v~~P~n~~vaPPGyYmLFvv~ 87 (101)
T cd02851 48 TDQRRIPLTLFSVG--GNSYSVQIPSDPGVALPGYYMLFVMN 87 (101)
T ss_pred CCccEEEeeeEecC--CCEEEEEcCCCCCcCCCcCeEEEEEC
Confidence 34455555543322 23566677888999999999998863
No 152
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=44.48 E-value=16 Score=38.72 Aligned_cols=63 Identities=25% Similarity=0.349 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CCeE--EEcCEEEECCCCCCccccc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGET--AKCKKVVCDPSYLPNKVRK 220 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge~--i~a~~VV~~~~y~p~~~~~ 220 (370)
..+.-+.+=-|+.+|++.+=..+|.+++.+++|++.|+++ .|+. ++|+.||-....+.+.+++
T Consensus 224 aRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~ 292 (680)
T KOG0042|consen 224 ARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRK 292 (680)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHh
Confidence 3677777778889999988778999999888888888764 3554 6899999766677665443
No 153
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=44.43 E-value=55 Score=34.76 Aligned_cols=51 Identities=14% Similarity=0.069 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHHH-hCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEE
Q 017499 158 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv-~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
.+|.+++-+.+.. .|..++.++.+.+++.+ ++++.||.. +|+ .++|+.||.
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIl 194 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAKAGII 194 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCcEEE
Confidence 3688888887765 68899999999999875 688998863 464 578998884
No 154
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=42.99 E-value=58 Score=37.88 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHh---CcEEEcCCccceEEEcCC--------CcEEEEEe------CCe--EEEcCEEEE-CCCCC
Q 017499 159 ELPQAFARLSAVY---GGTYMLNKPECKVEFDEE--------GKVVGVTS------EGE--TAKCKKVVC-DPSYL 214 (370)
Q Consensus 159 eI~Qaf~RlaAv~---Gg~y~L~~~V~~I~~~~~--------~~~~gV~~------~ge--~i~a~~VV~-~~~y~ 214 (370)
.+.+.|.+.++.. |+.+++++++.+++.+++ ++|+||.. +|+ .++||.||. ...|-
T Consensus 545 ~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~ 620 (1167)
T PTZ00306 545 TIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFS 620 (1167)
T ss_pred HHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcc
Confidence 4677787776654 999999999999998642 38999974 344 578999885 33443
No 155
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=42.76 E-value=58 Score=30.75 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=43.1
Q ss_pred cCCC-CCcHHHHHHHHHHHh-CcEEEcCCccceEEEc-CCCcEEEEEe---CCe----EEEcCEEEECCCCC
Q 017499 153 PLYG-LGELPQAFARLSAVY-GGTYMLNKPECKVEFD-EEGKVVGVTS---EGE----TAKCKKVVCDPSYL 214 (370)
Q Consensus 153 p~yG-~geI~Qaf~RlaAv~-Gg~y~L~~~V~~I~~~-~~~~~~gV~~---~ge----~i~a~~VV~~~~y~ 214 (370)
...| -.....++-+.+... |.+.+.++.|++|.++ ++++++||.. ++. .+.+|.||..+.-+
T Consensus 186 ~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai 257 (296)
T PF00732_consen 186 CPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAI 257 (296)
T ss_dssp ECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHH
T ss_pred ccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCC
Confidence 4445 334556665555555 8999999999999885 4688999984 343 45789999876544
No 156
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=42.24 E-value=72 Score=32.66 Aligned_cols=51 Identities=20% Similarity=0.145 Sum_probs=37.1
Q ss_pred HHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----------CC-----------eEEEcCEEEECCCCCCc
Q 017499 166 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----------EG-----------ETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 166 RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----------~g-----------e~i~a~~VV~~~~y~p~ 216 (370)
+.+...|..+++++.+.+|.-+++|++.+|.. +| +++.||.||....+.|+
T Consensus 317 ~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~ 388 (449)
T TIGR01316 317 AHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSN 388 (449)
T ss_pred HHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCC
Confidence 34567799999999998887655677777753 22 36899999987776664
No 157
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=41.64 E-value=79 Score=31.81 Aligned_cols=56 Identities=21% Similarity=0.154 Sum_probs=42.1
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~y~p~ 216 (370)
.++.+.+-+..+..|..+++++.|.+|.- ++++ -+..+|+.+.||.||.....-|.
T Consensus 179 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~-v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 179 EEMNQIVEEELKKHEINLRLNEEVDSIEG--EERV-KVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEec--CCCE-EEEcCCCEEEeCEEEECCCccCC
Confidence 46777777788889999999999999863 3443 23357899999999976665553
No 158
>PRK08013 oxidoreductase; Provisional
Probab=41.27 E-value=67 Score=32.04 Aligned_cols=50 Identities=16% Similarity=0.097 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHHHh-CcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEE
Q 017499 158 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~-Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~ 209 (370)
.+|-+.+...+... |.++..++.|.++..++++ + .|. .+|++++||.||+
T Consensus 111 ~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v-~v~~~~g~~i~a~lvVg 162 (400)
T PRK08013 111 SVIHYALWQKAQQSSDITLLAPAELQQVAWGENE-A-FLTLKDGSMLTARLVVG 162 (400)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe-E-EEEEcCCCEEEeeEEEE
Confidence 36777887777765 7899999999998765433 2 233 4899999999995
No 159
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=41.18 E-value=83 Score=32.72 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=44.3
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~~y~p~ 216 (370)
.++.+.+.+..+..|..+++++.|.+|.-++++ ...|. .+|+.+.||.||.....-|.
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 577888888888899999999999998754333 34454 37889999999986655553
No 160
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=41.17 E-value=30 Score=37.93 Aligned_cols=69 Identities=26% Similarity=0.310 Sum_probs=55.0
Q ss_pred HHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCcc--ccccC-eEEEEEEeecC
Q 017499 163 AFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSYLPNK--VRKVG-RVARAIAIMSH 233 (370)
Q Consensus 163 af~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~~y~p~~--~~~~~-~v~R~i~I~~~ 233 (370)
.+-+.-+..|-.++|++..++|.- ++++.+|+ .+|..+.||.||...-.-|.. .+.++ .+.|+|.|-++
T Consensus 192 lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnrGIvvnd~ 264 (793)
T COG1251 192 LLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNRGIVVNDY 264 (793)
T ss_pred HHHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCCCeeeccc
Confidence 345677889999999999988863 57889999 599999999999988888854 12333 68889988876
No 161
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=41.16 E-value=55 Score=35.51 Aligned_cols=52 Identities=15% Similarity=0.064 Sum_probs=42.1
Q ss_pred CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEE
Q 017499 157 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 157 ~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
...|..++.+.+...|+.+..++.+.+++.+ +|++.||.. +|+ .+.|+.||.
T Consensus 157 G~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~AkaVVL 214 (657)
T PRK08626 157 GHTMLYAVDNEAIKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVAKATLI 214 (657)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence 3478888888888899999999999999875 789999863 465 357998885
No 162
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=40.61 E-value=94 Score=31.87 Aligned_cols=68 Identities=25% Similarity=0.303 Sum_probs=46.8
Q ss_pred CceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCC--eEEEcCEEEECCCCCCc
Q 017499 148 SPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEG--ETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 148 sPflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~g--e~i~a~~VV~~~~y~p~ 216 (370)
.|.+.|.+ -.++.+.+-+..+..|..+++++.|.++..++++++..+. .+| +.+.||.||.....-|.
T Consensus 212 ~~~il~~~-~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 212 ADRILPTE-DAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred cCccCCcC-CHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence 34444543 3567888888888899999999999998752234444444 356 47999999976655553
No 163
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=40.55 E-value=68 Score=34.23 Aligned_cols=51 Identities=20% Similarity=0.144 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHhC----cEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEE
Q 017499 159 ELPQAFARLSAVYG----GTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv~G----g~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
.|.+++.+.+...| ..++.++.+.+++.+++|+|.||.. +|+ .++|+.||.
T Consensus 134 ~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVIL 194 (589)
T PRK08641 134 QLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIM 194 (589)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEE
Confidence 68888877766554 5688999999998866789999974 244 478999885
No 164
>PRK07588 hypothetical protein; Provisional
Probab=40.50 E-value=65 Score=31.88 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=35.5
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEEC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~ 210 (370)
.+|-+++.+.. ..|++++.++.|.+|..+ ++.+. |. .+|+.++||.||+.
T Consensus 103 ~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~~d~vIgA 153 (391)
T PRK07588 103 GDLAAAIYTAI-DGQVETIFDDSIATIDEH-RDGVR-VTFERGTPRDFDLVIGA 153 (391)
T ss_pred HHHHHHHHHhh-hcCeEEEeCCEEeEEEEC-CCeEE-EEECCCCEEEeCEEEEC
Confidence 45666665533 346899999999999865 34443 44 48999999999963
No 165
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=40.21 E-value=74 Score=31.23 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=37.6
Q ss_pred CcHHHHHHHHHHHhC-cEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEEC
Q 017499 158 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv~G-g~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~ 210 (370)
..+-+++.+.+...| +++. ++.|.++..+ ++. ..|.. +|+++.||.||+.
T Consensus 111 ~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~-~~~-~~v~~~~g~~~~a~~vI~a 162 (388)
T PRK07608 111 SLIERALWAALRFQPNLTWF-PARAQGLEVD-PDA-ATLTLADGQVLRADLVVGA 162 (388)
T ss_pred HHHHHHHHHHHHhCCCcEEE-cceeEEEEec-CCe-EEEEECCCCEEEeeEEEEe
Confidence 477888888888888 7777 9999988754 333 34654 7888999999953
No 166
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=40.07 E-value=81 Score=32.53 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=36.2
Q ss_pred HHHhCcEEEcCCccceEEEcCCCcEEEEEe----------C-----------CeEEEcCEEEECCCCCCc
Q 017499 168 SAVYGGTYMLNKPECKVEFDEEGKVVGVTS----------E-----------GETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 168 aAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----------~-----------ge~i~a~~VV~~~~y~p~ 216 (370)
+...|..+++++.+.+|..+++|++.+|+. + .+.+.||.||....+.|+
T Consensus 330 ~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 399 (467)
T TIGR01318 330 AREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPH 399 (467)
T ss_pred HHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCC
Confidence 356899999999998887655677776642 1 236889999988777764
No 167
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=40.00 E-value=74 Score=34.24 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=41.0
Q ss_pred CcHHHHHHHHHHHh--------C-----cEEEcCCccceEEEcCCCcEEEEEe----CCe--EEEcCEEEE
Q 017499 158 GELPQAFARLSAVY--------G-----GTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~--------G-----g~y~L~~~V~~I~~~~~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
.+|.++|-+.+... | +.+..++.|.+++.+ +|++.||.. +|+ .++|+.||.
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVl 207 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKD-GGRIAGAFGYWRESGRFVLFEAPAVVL 207 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEE-CCEEEEEEEEECCCCeEEEEEcCeEEE
Confidence 37888998877766 7 899999999999875 688998853 454 578999885
No 168
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=39.82 E-value=75 Score=32.26 Aligned_cols=52 Identities=13% Similarity=0.156 Sum_probs=36.9
Q ss_pred CcHHHHHHHHHHHhC---cEEEcCCccceEEEc-----CCCcEEEEE-eCCeEEEcCEEEE
Q 017499 158 GELPQAFARLSAVYG---GTYMLNKPECKVEFD-----EEGKVVGVT-SEGETAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~G---g~y~L~~~V~~I~~~-----~~~~~~gV~-~~ge~i~a~~VV~ 209 (370)
..|-+++-..++..| .+++.++.|.++..+ +++.-..|. .+|++++||.||+
T Consensus 117 ~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVg 177 (437)
T TIGR01989 117 DNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIG 177 (437)
T ss_pred HHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEE
Confidence 456666766666665 789999999999752 222223455 3899999999995
No 169
>PLN02507 glutathione reductase
Probab=39.77 E-value=88 Score=32.58 Aligned_cols=57 Identities=21% Similarity=0.188 Sum_probs=42.7
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~~~y~p~ 216 (370)
.++.+.+-+..+..|..+++++.|+++.-+ ++.+ .|.. +|+.+.||.|+....+-|+
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~-~~~~-~v~~~~g~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKT-EGGI-KVITDHGEEFVADVVLFATGRAPN 301 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCeE-EEEECCCcEEEcCEEEEeecCCCC
Confidence 466777777778899999999999999753 3333 3443 6888999999987666654
No 170
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=39.59 E-value=98 Score=31.67 Aligned_cols=58 Identities=17% Similarity=0.160 Sum_probs=42.6
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CC-eEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG-ETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~g-e~i~a~~VV~~~~y~p~ 216 (370)
.++.+.+-+..+..|..+++|+.|+++.-++++. ..|.. +| +.+.||.||.....-|+
T Consensus 207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 207 SMISETITEEYEKEGINVHKLSKPVKVEKTVEGK-LVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCce-EEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 3677777777788999999999999997532332 33443 67 67999999987666664
No 171
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=39.15 E-value=34 Score=35.56 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=28.7
Q ss_pred cEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECCC
Q 017499 173 GTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPS 212 (370)
Q Consensus 173 g~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~~ 212 (370)
+..+||+.|.+|..++.+++. |+ .||+++.||+||+.-+
T Consensus 244 ~~~~~~~rv~~I~~~~~~~v~-l~c~dg~v~~adhVIvTvs 283 (498)
T KOG0685|consen 244 KRIHLNTRVENINWKNTGEVK-LRCSDGEVFHADHVIVTVS 283 (498)
T ss_pred hhhcccccceeeccCCCCcEE-EEEeCCcEEeccEEEEEee
Confidence 445566999999876546543 55 4999999999998543
No 172
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=39.06 E-value=81 Score=31.08 Aligned_cols=50 Identities=18% Similarity=0.077 Sum_probs=36.9
Q ss_pred CcHHHHHHHHHHHh-CcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEE
Q 017499 158 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~-Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~ 209 (370)
.++-+.+.+.++.. |++++.++.|.++..++ +. ..|.. +|++++||.||.
T Consensus 112 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~-~~v~~~~g~~~~a~~vI~ 163 (391)
T PRK08020 112 RVLQLALWQALEAHPNVTLRCPASLQALQRDD-DG-WELTLADGEEIQAKLVIG 163 (391)
T ss_pred HHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC-Ce-EEEEECCCCEEEeCEEEE
Confidence 35667777766666 89999999999987643 32 34554 788999999995
No 173
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=39.03 E-value=69 Score=32.76 Aligned_cols=57 Identities=28% Similarity=0.438 Sum_probs=44.4
Q ss_pred ceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCe-EEEcCEEEECCC
Q 017499 149 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-TAKCKKVVCDPS 212 (370)
Q Consensus 149 Pflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge-~i~a~~VV~~~~ 212 (370)
|-|.|+.+ -++.+.--+.-+..|...+||++|++|. +++ |.. +|+ .++|+.||=.+-
T Consensus 201 p~ILp~~~-~~l~~~a~~~L~~~GV~v~l~~~Vt~v~--~~~----v~~~~g~~~I~~~tvvWaaG 259 (405)
T COG1252 201 PRILPMFP-PKLSKYAERALEKLGVEVLLGTPVTEVT--PDG----VTLKDGEEEIPADTVVWAAG 259 (405)
T ss_pred chhccCCC-HHHHHHHHHHHHHCCCEEEcCCceEEEC--CCc----EEEccCCeeEecCEEEEcCC
Confidence 88888887 4677777889999999999999999885 222 443 566 699999995443
No 174
>PRK12831 putative oxidoreductase; Provisional
Probab=38.76 E-value=96 Score=31.99 Aligned_cols=49 Identities=24% Similarity=0.259 Sum_probs=36.2
Q ss_pred HHHhCcEEEcCCccceEEEcCCCcEEEEEe-------------------CC--eEEEcCEEEECCCCCCc
Q 017499 168 SAVYGGTYMLNKPECKVEFDEEGKVVGVTS-------------------EG--ETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 168 aAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-------------------~g--e~i~a~~VV~~~~y~p~ 216 (370)
+...|..+++++.+.++..+++|++.+|+. +| +.+.||.||......|+
T Consensus 328 a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~ 397 (464)
T PRK12831 328 AKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPN 397 (464)
T ss_pred HHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCC
Confidence 456799999999998887666678877653 12 25889999987776664
No 175
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=38.00 E-value=99 Score=31.57 Aligned_cols=56 Identities=14% Similarity=0.076 Sum_probs=40.7
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE--e--CCeEEEcCEEEECCCCCC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT--S--EGETAKCKKVVCDPSYLP 215 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~--~--~ge~i~a~~VV~~~~y~p 215 (370)
.++.+.+-+..+..|..+++++.|.++..+ ++ ...|. . +++++.||.||.....-|
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~-~~-~~~v~~~~~~~~~~i~~D~ViiA~G~~p 266 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVR-GG-GKIITVEKPGGQGEVEADELLVATGRRP 266 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEc-CC-EEEEEEEeCCCceEEEeCEEEEeECCCc
Confidence 467788888888899999999999998754 22 22333 2 246899999997655444
No 176
>PRK09126 hypothetical protein; Provisional
Probab=37.88 E-value=94 Score=30.59 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=35.8
Q ss_pred cHHHHHHHHHH-HhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECC
Q 017499 159 ELPQAFARLSA-VYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDP 211 (370)
Q Consensus 159 eI~Qaf~RlaA-v~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~ 211 (370)
.+-+.+-+.++ ..|+.++.++.|.++..+ ++. ..|. .+|+.+.||.||+..
T Consensus 111 ~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~-~~~-~~v~~~~g~~~~a~~vI~Ad 163 (392)
T PRK09126 111 LIRRAAYEAVSQQDGIELLTGTRVTAVRTD-DDG-AQVTLANGRRLTARLLVAAD 163 (392)
T ss_pred HHHHHHHHHHhhCCCcEEEcCCeEEEEEEc-CCe-EEEEEcCCCEEEeCEEEEeC
Confidence 45555555444 368999999999998764 333 3455 478899999999643
No 177
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=37.77 E-value=65 Score=32.05 Aligned_cols=49 Identities=24% Similarity=0.257 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEEC
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCD 210 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~ 210 (370)
.+=+.+.+.++ .+|+..++..|.+|.-+. + ...|. .+|+.++|+.||..
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~-~-~~~v~~~~g~~i~a~~VvDa 137 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETG-D-GVLVVLADGRTIRARVVVDA 137 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecC-c-eEEEEECCCCEEEeeEEEEC
Confidence 55555666666 888899999999987642 2 33444 48899999999954
No 178
>PRK14694 putative mercuric reductase; Provisional
Probab=37.43 E-value=1.1e+02 Score=31.25 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~y~p~ 216 (370)
.++.+.+-+..+..|..+++++.|.+|..+ ++ ...+..++..+.||.||.....-|.
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~-~~~v~~~~~~i~~D~vi~a~G~~pn 274 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYN-GR-EFILETNAGTLRAEQLLVATGRTPN 274 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CC-EEEEEECCCEEEeCEEEEccCCCCC
Confidence 478888888888999999999999998753 33 3335556667999999986655553
No 179
>PRK06370 mercuric reductase; Validated
Probab=37.41 E-value=1.1e+02 Score=31.40 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=42.1
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe--CCeEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~--~ge~i~a~~VV~~~~y~p~ 216 (370)
.++.+.+-+.....|..+++++.|.+|.-++++....+.. +++.+.||.||.....-|.
T Consensus 212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 212 EDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPN 272 (463)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcC
Confidence 3577778888888999999999999987543332223332 3567999999987665554
No 180
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=37.35 E-value=82 Score=33.59 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=39.0
Q ss_pred cHHHHHHHHHHHh-CcEEEcCCccceEEEcCCCcEEEEEe----CC--eEEEcCEEEE
Q 017499 159 ELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv~-Gg~y~L~~~V~~I~~~~~~~~~gV~~----~g--e~i~a~~VV~ 209 (370)
+|.+++-+.+... |..++.++.+.+++.+ +|++.||.. +| ..++|+.||.
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIl 190 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVM 190 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEE
Confidence 6777777666554 7889999999999875 788998753 46 3689999995
No 181
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=36.98 E-value=1e+02 Score=31.37 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=42.4
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~~y~p~ 216 (370)
.++.+.+-+..+..|..+++++.|.++.-++++ ..|. .+|+.+.+|.||......|+
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 207 DDMRALLARNMEGRGIRIHPQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPN 264 (446)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcC
Confidence 467777777778899999999999998753333 2344 37889999999976666553
No 182
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=35.92 E-value=96 Score=33.09 Aligned_cols=51 Identities=22% Similarity=0.187 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHHh-CcEEEcCCccceEEEcCCCcEEEEEe----CC--eEEEcCEEEE
Q 017499 158 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~-Gg~y~L~~~V~~I~~~~~~~~~gV~~----~g--e~i~a~~VV~ 209 (370)
.+|.+++-+.+... |.++..++.+.+++.+ +|++.||.. +| ..++|+.||.
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIL 189 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVL 189 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEE
Confidence 36888888777664 6788889999999885 789999863 56 4678999985
No 183
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=35.44 E-value=89 Score=30.57 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=41.6
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~~~y~p~ 216 (370)
.++.+.+-+..+..|..+++++.|.++. ++ +|.. +|+.+.+|.||..+..-|.
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~---~~---~v~~~~g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRGP---DG---ALILADGRTLPADAILWATGARAP 244 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEc---CC---eEEeCCCCEEecCEEEEccCCChh
Confidence 3577888888899999999999998873 22 3554 7899999999987766553
No 184
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=35.43 E-value=74 Score=33.26 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=40.6
Q ss_pred cHHHHHHHHHH-HhCcEEEcCCccceEEEcCCCcEEEEEe--CCe---EEEcCEEEECCCCC
Q 017499 159 ELPQAFARLSA-VYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE---TAKCKKVVCDPSYL 214 (370)
Q Consensus 159 eI~Qaf~RlaA-v~Gg~y~L~~~V~~I~~~~~~~~~gV~~--~ge---~i~a~~VV~~~~y~ 214 (370)
.-..++-+.+. ..|.+++.++.|.+|.++ +++++||.. +|+ .+.||.||..+.-+
T Consensus 194 s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai 254 (532)
T TIGR01810 194 SAARAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAI 254 (532)
T ss_pred cHHHHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCC
Confidence 44556655544 467999999999999996 789999985 333 35788888776654
No 185
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=35.15 E-value=1.2e+02 Score=30.77 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=46.2
Q ss_pred CceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 017499 148 SPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 148 sPflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~y~p~ 216 (370)
.+.+.|.. ..++.+.+.+..+..|..+++++.|.+|.-+ ++.+ .+..++..+.||.||.....-|+
T Consensus 190 ~~~~l~~~-~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~g~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 190 ASLFLPRE-DRDIADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEHAQLAVDALLIASGRQPA 255 (441)
T ss_pred CCCCCCCc-CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcCCeEEeCEEEEeecCCcC
Confidence 33344444 3578888888999999999999999998754 3332 34444446899999976555553
No 186
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=34.93 E-value=1.2e+02 Score=31.27 Aligned_cols=57 Identities=23% Similarity=0.264 Sum_probs=42.8
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~~y~p~ 216 (370)
.++.+.+-+..+..|..+++++.|.++..+ ++.+. |. .+|+.+.+|.||.....-|+
T Consensus 218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~~-v~~~~g~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 218 ADAAEVLEEVFARRGMTVLKRSRAESVERT-GDGVV-VTLTDGRTVEGSHALMAVGSVPN 275 (466)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCEEEEEEEe-CCEEE-EEECCCcEEEecEEEEeecCCcC
Confidence 467777777778899999999999998754 33333 44 47889999999987666654
No 187
>PRK05868 hypothetical protein; Validated
Probab=34.88 E-value=77 Score=31.45 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEEC
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCD 210 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~ 210 (370)
+|-+.+-+ +...|..++.++.|.++..+ ++.+ .|. .+|+++.||.||+.
T Consensus 106 ~L~~~l~~-~~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~dg~~~~adlvIgA 155 (372)
T PRK05868 106 DLVELLYG-ATQPSVEYLFDDSISTLQDD-GDSV-RVTFERAAAREFDLVIGA 155 (372)
T ss_pred HHHHHHHH-hccCCcEEEeCCEEEEEEec-CCeE-EEEECCCCeEEeCEEEEC
Confidence 55555543 23468889999999998753 3333 344 48899999999963
No 188
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=34.16 E-value=1.1e+02 Score=30.07 Aligned_cols=51 Identities=27% Similarity=0.240 Sum_probs=37.0
Q ss_pred CcHHHHHHHHHHH-hCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEEC
Q 017499 158 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv-~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~ 210 (370)
.++-+.+...++. .|++++.++.|.++..+ ++.+ .|.. +|+.+.||.||..
T Consensus 112 ~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~-~~~~-~v~~~~g~~~~a~~vI~A 164 (395)
T PRK05732 112 HDVGQRLFALLDKAPGVTLHCPARVANVERT-QGSV-RVTLDDGETLTGRLLVAA 164 (395)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCEEEEEEEc-CCeE-EEEECCCCEEEeCEEEEe
Confidence 3566777776655 57899999999998754 3333 3554 7888999999953
No 189
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=34.15 E-value=1e+02 Score=32.31 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHHh-CcEEEcCCccceEEEcCCCcEEEEEe-CC--eEEEcCEEEE
Q 017499 159 ELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv~-Gg~y~L~~~V~~I~~~~~~~~~gV~~-~g--e~i~a~~VV~ 209 (370)
++-+.+-..++.+ |+.++.++.|.++..++++....+.. +| ++++||+||+
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVg 168 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVG 168 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEe
Confidence 4555665555554 89999999999998764442222222 56 5799999995
No 190
>PRK09897 hypothetical protein; Provisional
Probab=33.70 E-value=77 Score=33.58 Aligned_cols=56 Identities=7% Similarity=-0.003 Sum_probs=38.4
Q ss_pred CCC--CCcHHHHHHHHHHHhC--cEEEcCCccceEEEcCCCcEEEEEe-C-CeEEEcCEEEECC
Q 017499 154 LYG--LGELPQAFARLSAVYG--GTYMLNKPECKVEFDEEGKVVGVTS-E-GETAKCKKVVCDP 211 (370)
Q Consensus 154 ~yG--~geI~Qaf~RlaAv~G--g~y~L~~~V~~I~~~~~~~~~gV~~-~-ge~i~a~~VV~~~ 211 (370)
.|| +.+.-+.+.+.+...| +.++.++.|.+|..++ +. ..|.+ + |+.+.||.||...
T Consensus 101 l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~-~g-~~V~t~~gg~~i~aD~VVLAt 162 (534)
T PRK09897 101 LLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN-AG-VMLATNQDLPSETFDLAVIAT 162 (534)
T ss_pred cchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC-CE-EEEEECCCCeEEEcCEEEECC
Confidence 456 5566666666666676 6888899999997653 33 33554 3 5789999999643
No 191
>PRK07538 hypothetical protein; Provisional
Probab=33.64 E-value=92 Score=31.19 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=39.6
Q ss_pred ecCCC--CCcHHHHHHHHHHH-hCc-EEEcCCccceEEEcCCCcEEEEEe--C--CeEEEcCEEEEC
Q 017499 152 YPLYG--LGELPQAFARLSAV-YGG-TYMLNKPECKVEFDEEGKVVGVTS--E--GETAKCKKVVCD 210 (370)
Q Consensus 152 yp~yG--~geI~Qaf~RlaAv-~Gg-~y~L~~~V~~I~~~~~~~~~gV~~--~--ge~i~a~~VV~~ 210 (370)
+|.|+ -++|-+.+.+.++. .|. .+++++.|.++..++++.+..+.. + +++++||.||+.
T Consensus 94 ~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgA 160 (413)
T PRK07538 94 WPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGA 160 (413)
T ss_pred CceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEEC
Confidence 44444 24677777777655 474 699999999987655554444432 2 358999999964
No 192
>PLN02463 lycopene beta cyclase
Probab=33.63 E-value=1e+02 Score=31.82 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=36.8
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEECC
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDP 211 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~~ 211 (370)
++-+.+.+.|+..|++++ +..|.+|..+ +++ ..|.+ +|++++|+.||...
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~-~~~-~~V~~~dG~~i~A~lVI~Ad 165 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHE-ESK-SLVVCDDGVKIQASLVLDAT 165 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEc-CCe-EEEEECCCCEEEcCEEEECc
Confidence 566777777788899985 6788888764 333 45664 78899999999643
No 193
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=33.58 E-value=1.2e+02 Score=32.83 Aligned_cols=51 Identities=20% Similarity=0.380 Sum_probs=37.6
Q ss_pred HHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----------CC-----------eEEEcCEEEECCCCCCc
Q 017499 166 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----------EG-----------ETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 166 RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----------~g-----------e~i~a~~VV~~~~y~p~ 216 (370)
+.+...|..+++++.+.+|..+++|++.+|+. +| .++.||.||....+.|+
T Consensus 514 ~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~ 585 (654)
T PRK12769 514 KNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPH 585 (654)
T ss_pred HHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCC
Confidence 34567899999999998887666788877763 12 25899999987776664
No 194
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=33.29 E-value=1.1e+02 Score=30.51 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=36.2
Q ss_pred CcHHHHHHHHHHH-hCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEE
Q 017499 158 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv-~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~ 209 (370)
..|-+.+...++. .|++++.++.|+++..++++ ..|. .+|++++||.||+
T Consensus 111 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvIg 162 (405)
T PRK08850 111 RVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVVG 162 (405)
T ss_pred HHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEEE
Confidence 3466677666655 47889999999999765333 3355 4889999999995
No 195
>PTZ00058 glutathione reductase; Provisional
Probab=33.17 E-value=1.6e+02 Score=31.45 Aligned_cols=59 Identities=10% Similarity=-0.016 Sum_probs=43.0
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeC-CeEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~-ge~i~a~~VV~~~~y~p~ 216 (370)
.++.+.+-+.....|..+++++.|.+|.-++++.+.-+..+ ++.+.||.|+.....-|.
T Consensus 278 ~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 278 ETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCC
Confidence 46778888888889999999999999875333333322233 468999999987766664
No 196
>PRK13748 putative mercuric reductase; Provisional
Probab=33.13 E-value=1.3e+02 Score=31.52 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=43.4
Q ss_pred CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 017499 157 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 157 ~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~y~p~ 216 (370)
-.++.+.+-+..+..|..+++++.|.+|..+ ++. ..+..+++.+.+|.||.....-|.
T Consensus 309 d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~-~~v~~~~~~i~~D~vi~a~G~~pn 366 (561)
T PRK13748 309 DPAIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGE-FVLTTGHGELRADKLLVATGRAPN 366 (561)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCE-EEEEecCCeEEeCEEEEccCCCcC
Confidence 3467788888888899999999999998754 343 335555557999999987766664
No 197
>PRK06996 hypothetical protein; Provisional
Probab=32.76 E-value=1e+02 Score=30.75 Aligned_cols=51 Identities=20% Similarity=0.192 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CC---eEEEcCEEEEC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG---ETAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~g---e~i~a~~VV~~ 210 (370)
.+|-+.+-..++..|+.+..++.+.++.-+.++ + -|.. +| ++++||+||.-
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-v-~v~~~~~~g~~~i~a~lvIgA 169 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADG-V-TLALGTPQGARTLRARIAVQA 169 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-E-EEEECCCCcceEEeeeEEEEC
Confidence 478899999999999999999999888654333 2 2332 33 68999999963
No 198
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=32.07 E-value=1.1e+02 Score=31.97 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHh-CcEEEcCCccceEEEcCCCcEEEEEe-CCe-EEEcCEEEE
Q 017499 159 ELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EGE-TAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv~-Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge-~i~a~~VV~ 209 (370)
++-+.+...++.. |+.+++++.|.++..++++....+.. +|+ +++||+||+
T Consensus 126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVg 179 (547)
T PRK08132 126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIA 179 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEE
Confidence 3445566666665 67899999999998754443333433 454 799999995
No 199
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=31.81 E-value=1.6e+02 Score=29.75 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=45.0
Q ss_pred CCceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCC
Q 017499 147 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP 215 (370)
Q Consensus 147 ~sPflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~y~p 215 (370)
..+.+.|.. -.++.+.+-+..+..|..+++++.|.+|.-+ ++++ .+..+|+.+.+|.||.....-|
T Consensus 188 ~~~~~l~~~-~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~v-~v~~~g~~i~~D~viva~G~~p 253 (438)
T PRK07251 188 AASTILPRE-EPSVAALAKQYMEEDGITFLLNAHTTEVKND-GDQV-LVVTEDETYRFDALLYATGRKP 253 (438)
T ss_pred cCCccCCCC-CHHHHHHHHHHHHHcCCEEEcCCEEEEEEec-CCEE-EEEECCeEEEcCEEEEeeCCCC
Confidence 334444443 2356666667778899999999999998753 3332 3445788999999997655544
No 200
>PRK06475 salicylate hydroxylase; Provisional
Probab=31.41 E-value=1.1e+02 Score=30.46 Aligned_cols=52 Identities=12% Similarity=0.081 Sum_probs=36.4
Q ss_pred CcHHHHHHHHHHHh-CcEEEcCCccceEEEcCCCcEEE-EE--eCCeEEEcCEEEEC
Q 017499 158 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVG-VT--SEGETAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv~-Gg~y~L~~~V~~I~~~~~~~~~g-V~--~~ge~i~a~~VV~~ 210 (370)
++|-+++-..++.. |..++.++.|.++..+ ++.+.. +. .+++++.||.||+.
T Consensus 107 ~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~-~~~v~v~~~~~~~~~~~~adlvIgA 162 (400)
T PRK06475 107 ADLQSALLDACRNNPGIEIKLGAEMTSQRQT-GNSITATIIRTNSVETVSAAYLIAC 162 (400)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEecC-CCceEEEEEeCCCCcEEecCEEEEC
Confidence 47888887776654 7889999999998764 333322 22 23468999999964
No 201
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=31.22 E-value=1.2e+02 Score=30.61 Aligned_cols=51 Identities=20% Similarity=0.060 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCC
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSYLP 215 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~~y~p 215 (370)
++.+.+-+..+..|..+++++.|.++.- + +|. .+|+.++||.||..+..-|
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCCCC
Confidence 5677777778899999999999988742 2 244 4799999999998765444
No 202
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=30.92 E-value=59 Score=33.65 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=38.3
Q ss_pred CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe
Q 017499 157 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS 197 (370)
Q Consensus 157 ~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~ 197 (370)
++++.+-+..-|+..|+.+.=+-...+++++++|.++||-+
T Consensus 182 L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT 222 (621)
T KOG2415|consen 182 LGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIAT 222 (621)
T ss_pred HHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEee
Confidence 67899999999999999999999999999999999999965
No 203
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=30.90 E-value=1.2e+02 Score=31.16 Aligned_cols=55 Identities=24% Similarity=0.324 Sum_probs=42.3
Q ss_pred CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEE-EEe--C--CeEEEcCEEEECC
Q 017499 157 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVG-VTS--E--GETAKCKKVVCDP 211 (370)
Q Consensus 157 ~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~g-V~~--~--ge~i~a~~VV~~~ 211 (370)
-+||+.+|-|+-.-.|-.|+|++.|.....+.+|.+.- |.. + -+++.||.+...-
T Consensus 251 D~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsi 310 (506)
T KOG1335|consen 251 DGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSI 310 (506)
T ss_pred CHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEc
Confidence 46999999999999999999999999988766664432 221 2 3578999877543
No 204
>PRK11445 putative oxidoreductase; Provisional
Probab=30.90 E-value=1.2e+02 Score=29.58 Aligned_cols=41 Identities=15% Similarity=0.053 Sum_probs=29.2
Q ss_pred HHHhCcEEEcCCccceEEEcCCCcEEEEE--eCCe--EEEcCEEEEC
Q 017499 168 SAVYGGTYMLNKPECKVEFDEEGKVVGVT--SEGE--TAKCKKVVCD 210 (370)
Q Consensus 168 aAv~Gg~y~L~~~V~~I~~~~~~~~~gV~--~~ge--~i~a~~VV~~ 210 (370)
++..|++++.++.|.++..++++ ..|. .+|+ .++||.||..
T Consensus 108 ~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~~g~~~~i~a~~vV~A 152 (351)
T PRK11445 108 LIPASVEVYHNSLCRKIWREDDG--YHVIFRADGWEQHITARYLVGA 152 (351)
T ss_pred HHhcCCEEEcCCEEEEEEEcCCE--EEEEEecCCcEEEEEeCEEEEC
Confidence 45578999999999998765443 2243 3564 6899999953
No 205
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=30.89 E-value=1.4e+02 Score=32.13 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=39.1
Q ss_pred CCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCC--CcEEEEEe----CCe--EEEcCEEEE
Q 017499 156 GLGELPQAFARLSAVYGGTYMLNKPECKVEFDEE--GKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 156 G~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~--~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
|...+...+.+.....|+.++.++.+.+++.+++ |++.||.. +|+ .+.|+.||.
T Consensus 124 gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVL 185 (614)
T TIGR02061 124 HGESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIV 185 (614)
T ss_pred CchhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEE
Confidence 3345555555555556789999999999998643 79999873 454 478999985
No 206
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=30.77 E-value=1e+02 Score=30.55 Aligned_cols=50 Identities=24% Similarity=0.193 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHH-hCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEEC
Q 017499 159 ELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCD 210 (370)
Q Consensus 159 eI~Qaf~RlaAv-~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~ 210 (370)
.|-+++...++. .|..++.++.|.++..++++ + .|. .+|++++||.||+.
T Consensus 111 ~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~-~-~v~~~~g~~~~~~lvIgA 162 (384)
T PRK08849 111 LIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG-N-RVTLESGAEIEAKWVIGA 162 (384)
T ss_pred HHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe-E-EEEECCCCEEEeeEEEEe
Confidence 455566555444 46889999999999875443 3 244 38899999999963
No 207
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=30.63 E-value=1.9e+02 Score=29.65 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=46.2
Q ss_pred CceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-e--CC--eEEEcCEEEECCCCCCc
Q 017499 148 SPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-S--EG--ETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 148 sPflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~--~g--e~i~a~~VV~~~~y~p~ 216 (370)
.+.++|.. -.++.+.+.+..+..|..+++|+.|.++.-+ ++.+ .+. . +| +.+.||.||.....-|.
T Consensus 204 ~~~~l~~~-d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 204 LDRALPNE-DAEVSKEIAKQYKKLGVKILTGTKVESIDDN-GSKV-TVTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred CCCcCCcc-CHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCeE-EEEEEecCCCeEEEEeCEEEECcCcccC
Confidence 34445543 3467888888888899999999999998643 3332 232 2 56 47999999987766664
No 208
>PRK07236 hypothetical protein; Provisional
Probab=30.49 E-value=1.1e+02 Score=30.34 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=33.9
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEEC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~ 210 (370)
..+-+.+.+ +.-++.+++++.|.++..+ ++.+.-...+|++++||.||+.
T Consensus 100 ~~l~~~L~~--~~~~~~i~~~~~v~~i~~~-~~~v~v~~~~g~~~~ad~vIgA 149 (386)
T PRK07236 100 NVLYRALRA--AFPAERYHLGETLVGFEQD-GDRVTARFADGRRETADLLVGA 149 (386)
T ss_pred HHHHHHHHH--hCCCcEEEcCCEEEEEEec-CCeEEEEECCCCEEEeCEEEEC
Confidence 345555543 2345679999999999864 3344322348999999999964
No 209
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.41 E-value=66 Score=33.82 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=40.6
Q ss_pred ceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEE
Q 017499 149 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVC 209 (370)
Q Consensus 149 Pflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~ 209 (370)
....-..|...+.++++- |..++|++.|.+|.+..++++ .+. .+|....+|+||+
T Consensus 210 ~~~~~~~G~~~v~~~la~-----~l~I~~~~~v~~i~~~~~~~~-~~~~~~~~~~~~d~vvv 265 (501)
T KOG0029|consen 210 IHLLMKGGYEPVVNSLAE-----GLDIHLNKRVRKIKYGDDGAV-KVTVETGDGYEADAVVV 265 (501)
T ss_pred chhHhhCCccHHHhhcCC-----CcceeeceeeEEEEEecCCce-EEEEECCCeeEeeEEEE
Confidence 445556677777766655 999999999999998766653 343 4566689999886
No 210
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=30.34 E-value=58 Score=30.48 Aligned_cols=43 Identities=21% Similarity=0.458 Sum_probs=33.3
Q ss_pred CCCcEEEEEe-CCeEEEcCEEEECCCCCCccccccCeEEEEEEe
Q 017499 188 EEGKVVGVTS-EGETAKCKKVVCDPSYLPNKVRKVGRVARAIAI 230 (370)
Q Consensus 188 ~~~~~~gV~~-~ge~i~a~~VV~~~~y~p~~~~~~~~v~R~i~I 230 (370)
+.+.+.|+++ +|-++-++.+|.++=|.|+.-..+..|.|-|-+
T Consensus 33 n~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~ 76 (254)
T KOG0184|consen 33 NSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGM 76 (254)
T ss_pred cCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccE
Confidence 4578999997 788899999999999999765555566665543
No 211
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=30.31 E-value=1.3e+02 Score=29.59 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=37.6
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEECCC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS 212 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~~~ 212 (370)
.++-+.+.+.++..|++++ +..|..+..+ ++....|.+ +|+.++|+.||....
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~~g~~~~a~~VI~A~G 138 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCAGGQRIQARLVIDARG 138 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeCCCCEEEeCEEEECCC
Confidence 4677888888888888885 6678777653 244455665 677999999996443
No 212
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=30.23 E-value=1.5e+02 Score=30.36 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=40.7
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~~y~p~ 216 (370)
.++.+.+.++.+ .|..+++++.|.++..+ ++.+ .|. .+|+.+.+|.|+.....-|.
T Consensus 210 ~~~~~~l~~~~~-~gI~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 210 EDISDRFTEIAK-KKWDIRLGRNVTAVEQD-GDGV-TLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred HHHHHHHHHHHh-cCCEEEeCCEEEEEEEc-CCeE-EEEEcCCCEEEcCEEEEeeccCcC
Confidence 466777766654 68999999999999754 3333 344 36888999999987766664
No 213
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=30.01 E-value=1.3e+02 Score=29.64 Aligned_cols=50 Identities=10% Similarity=0.065 Sum_probs=37.2
Q ss_pred CcHHHHHHHHHHHhC-cEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEE
Q 017499 158 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVC 209 (370)
Q Consensus 158 geI~Qaf~RlaAv~G-g~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~ 209 (370)
.+|-+++...++..| .+++.++.+.++..+++ .+ .|..++.+++||.||+
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~v-~v~~~~~~~~adlvIg 154 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHND-YS-IIKFDDKQIKCNLLII 154 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCC-eE-EEEEcCCEEeeCEEEE
Confidence 578888888777776 67888999999876533 33 3554444999999995
No 214
>PLN02815 L-aspartate oxidase
Probab=29.00 E-value=1.3e+02 Score=32.21 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHHh-CcEEEcCCccceEEEcCCC---cEEEEEe----CCe--EEEcCEEEE
Q 017499 159 ELPQAFARLSAVY-GGTYMLNKPECKVEFDEEG---KVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv~-Gg~y~L~~~V~~I~~~~~~---~~~gV~~----~ge--~i~a~~VV~ 209 (370)
+|.+++-+.+... |..++.++.+.+++.+++| +|.||.. +|+ .++||.||.
T Consensus 156 ~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVIL 216 (594)
T PLN02815 156 EIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLL 216 (594)
T ss_pred HHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEE
Confidence 6888888777655 7899999999999986444 3889874 454 468999885
No 215
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=28.45 E-value=1.8e+02 Score=29.90 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=42.1
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----CCeEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----~ge~i~a~~VV~~~~y~p~ 216 (370)
.++.+.+-+..+..|..+++++.|.++.-++++....+.. +++.+.||.||......|.
T Consensus 215 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 215 TETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY 277 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence 3677888888888999999999999997532332222321 2467999999987766664
No 216
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=27.37 E-value=83 Score=27.07 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=32.8
Q ss_pred CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEEC
Q 017499 157 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCD 210 (370)
Q Consensus 157 ~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~ 210 (370)
+.+.-+.+.+.+...--+-+.+..|..|....++ . .|. .+|+.+.||.||..
T Consensus 100 L~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~-~-~v~~~~g~~~~~d~VvLa 152 (156)
T PF13454_consen 100 LRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDG-Y-RVVTADGQSIRADAVVLA 152 (156)
T ss_pred HHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCc-E-EEEECCCCEEEeCEEEEC
Confidence 4444444444442222455578888888875444 3 444 58999999999964
No 217
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=27.13 E-value=2e+02 Score=26.68 Aligned_cols=51 Identities=18% Similarity=0.326 Sum_probs=38.9
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEECC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDP 211 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~~ 211 (370)
.++..-+.+.++.+|..+++ ..|.+|..+ +....|.. +|+.+++|+||...
T Consensus 57 ~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~--~~~~~v~~~~~~~~~~d~liiAt 108 (300)
T TIGR01292 57 PELMEKMKEQAVKFGAEIIY-EEVIKVDLS--DRPFKVKTGDGKEYTAKAVIIAT 108 (300)
T ss_pred HHHHHHHHHHHHHcCCeEEE-EEEEEEEec--CCeeEEEeCCCCEEEeCEEEECC
Confidence 47888999999999999998 788887653 22334554 67899999999644
No 218
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=26.72 E-value=1.6e+02 Score=31.69 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=35.1
Q ss_pred HHHhCcEEEcCCccceEEEcCCCcEEEEEe----------CC-----------eEEEcCEEEECCCCCC
Q 017499 168 SAVYGGTYMLNKPECKVEFDEEGKVVGVTS----------EG-----------ETAKCKKVVCDPSYLP 215 (370)
Q Consensus 168 aAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----------~g-----------e~i~a~~VV~~~~y~p 215 (370)
+...|..+++++.+.+|..+++|++.+|+. +| ..+.||.||....+.|
T Consensus 499 a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p 567 (639)
T PRK12809 499 AREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQA 567 (639)
T ss_pred HHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCC
Confidence 456799999999999998766788877642 12 2678888887666555
No 219
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=26.67 E-value=1.7e+02 Score=29.17 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=35.8
Q ss_pred CCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE--eCCe--EEEcCEEEE
Q 017499 155 YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT--SEGE--TAKCKKVVC 209 (370)
Q Consensus 155 yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~--~~ge--~i~a~~VV~ 209 (370)
||...+-+.+-+.++..|+..++++.+.++.-. ++...+|. .+|+ .+.||.||+
T Consensus 100 ~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~-~~~~~~V~~~~~g~~~~i~adlvIG 157 (390)
T TIGR02360 100 YGQTEVTRDLMEAREAAGLTTVYDADDVRLHDL-AGDRPYVTFERDGERHRLDCDFIAG 157 (390)
T ss_pred eCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEec-CCCccEEEEEECCeEEEEEeCEEEE
Confidence 444466677777777789999999987666431 22223343 2675 689999995
No 220
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=26.65 E-value=1.9e+02 Score=29.46 Aligned_cols=49 Identities=22% Similarity=0.174 Sum_probs=34.5
Q ss_pred HHHHhCcEEEcCCccceEEEcCCCcEEEEEe--------------------CCeEEEcCEEEECCCCCCc
Q 017499 167 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--------------------EGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 167 laAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~--------------------~ge~i~a~~VV~~~~y~p~ 216 (370)
.+...|..+++++.+.+|.-+ ++++.+|.. +++++.||.||....+-|+
T Consensus 320 ~~~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~ 388 (457)
T PRK11749 320 HAKEEGVEFEWLAAPVEILGD-EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPN 388 (457)
T ss_pred HHHHCCCEEEecCCcEEEEec-CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCC
Confidence 345689999999999888754 344444532 2457899999988777664
No 221
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=26.56 E-value=1.7e+02 Score=30.45 Aligned_cols=51 Identities=24% Similarity=0.267 Sum_probs=40.6
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEEC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~ 210 (370)
.++.+.+-+..+.+|..+++++.|.+|..++ + ...|.. +|+.+.||.||..
T Consensus 266 ~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~-~-~~~V~~~~g~~i~a~~vViA 317 (517)
T PRK15317 266 PKLAAALEEHVKEYDVDIMNLQRASKLEPAA-G-LIEVELANGAVLKAKTVILA 317 (517)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-C-eEEEEECCCCEEEcCEEEEC
Confidence 4888999999999999999999999987642 2 334544 7788999998853
No 222
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=26.41 E-value=25 Score=33.83 Aligned_cols=32 Identities=47% Similarity=0.958 Sum_probs=25.0
Q ss_pred HHHHhhhccc------CCCceeecCCC-CCcHHH-HHHHH
Q 017499 136 LYAESIARFQ------GGSPYIYPLYG-LGELPQ-AFARL 167 (370)
Q Consensus 136 ~yl~S~g~y~------G~sPflyp~yG-~geI~Q-af~Rl 167 (370)
+|+++-+.|+ |+=|+.||.+| .|-|+| +|+|-
T Consensus 57 Lf~S~kA~f~ppKpIRGGIP~~FPQFG~~g~l~qHGFaRn 96 (305)
T KOG1594|consen 57 LFVSTKAIFKPPKPIRGGIPICFPQFGNFGSLPQHGFARN 96 (305)
T ss_pred EEechhhhcCCCCcccCCcceEeeccCCCCcccccccccc
Confidence 5666666665 68899999999 999998 56663
No 223
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=25.80 E-value=1.5e+02 Score=27.99 Aligned_cols=74 Identities=16% Similarity=0.076 Sum_probs=45.2
Q ss_pred HHHHHhhhcc-cCCCceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeC------------CeE
Q 017499 135 KLYAESIARF-QGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE------------GET 201 (370)
Q Consensus 135 ~~yl~S~g~y-~G~sPflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~------------ge~ 201 (370)
+.+|+.+|.- .-...++|-.-. -|....+.-.+.-.|+.+.-...|+++.+.+++|+.||..| .-+
T Consensus 73 ~~iL~elgi~y~~~~~g~~v~d~-~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~ 151 (230)
T PF01946_consen 73 DEILDELGIPYEEYGDGYYVADS-VEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLT 151 (230)
T ss_dssp HHHHHHHT---EE-SSEEEES-H-HHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EE
T ss_pred HHHHHhCCceeEEeCCeEEEEcH-HHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcce
Confidence 4666766653 111233343332 23444433333349999999999999998756899999642 237
Q ss_pred EEcCEEEE
Q 017499 202 AKCKKVVC 209 (370)
Q Consensus 202 i~a~~VV~ 209 (370)
++|+.||.
T Consensus 152 i~ak~ViD 159 (230)
T PF01946_consen 152 IRAKVVID 159 (230)
T ss_dssp EEESEEEE
T ss_pred EEEeEEEe
Confidence 89999995
No 224
>PRK09077 L-aspartate oxidase; Provisional
Probab=25.58 E-value=1.6e+02 Score=30.93 Aligned_cols=51 Identities=16% Similarity=0.118 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHHh-CcEEEcCCccceEEEcC-----CCcEEEEEe----CCe--EEEcCEEEE
Q 017499 159 ELPQAFARLSAVY-GGTYMLNKPECKVEFDE-----EGKVVGVTS----EGE--TAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv~-Gg~y~L~~~V~~I~~~~-----~~~~~gV~~----~ge--~i~a~~VV~ 209 (370)
+|.+.+.+.+... |..++.++.+.+++.++ ++++.||.. +|+ .++||.||.
T Consensus 139 ~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVl 201 (536)
T PRK09077 139 AVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVL 201 (536)
T ss_pred HHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEE
Confidence 7888887766655 89999999999988753 378999873 354 578999885
No 225
>PRK07846 mycothione reductase; Reviewed
Probab=25.27 E-value=1.8e+02 Score=29.78 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=38.8
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSYLP 215 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~~y~p 215 (370)
.++.+.+.++. ..|..+++++.|.++.-+ ++.+ .|. .+|+.+.||.||......|
T Consensus 207 ~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~p 262 (451)
T PRK07846 207 DDISERFTELA-SKRWDVRLGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRVP 262 (451)
T ss_pred HHHHHHHHHHH-hcCeEEEeCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCcc
Confidence 46666666655 468899999999998753 3332 344 3788999999997655554
No 226
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=25.23 E-value=1.1e+02 Score=32.47 Aligned_cols=63 Identities=11% Similarity=0.004 Sum_probs=43.6
Q ss_pred ecCCC--CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCC--CcEEEEEe----CCe--EEEcCEEEECCCCC
Q 017499 152 YPLYG--LGELPQAFARLSAVYGGTYMLNKPECKVEFDEE--GKVVGVTS----EGE--TAKCKKVVCDPSYL 214 (370)
Q Consensus 152 yp~yG--~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~--~~~~gV~~----~ge--~i~a~~VV~~~~y~ 214 (370)
+.+|. .--+++++.+..+--..+.++|+.|.+|..|++ +++.+|.. +|+ +++||.||..+.-+
T Consensus 206 ~ak~s~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaI 278 (544)
T TIGR02462 206 YVEWHSADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAV 278 (544)
T ss_pred cceecCCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCch
Confidence 44453 234677776555444489999999999999864 47888852 344 47899999766544
No 227
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=25.20 E-value=2.4e+02 Score=29.02 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=45.3
Q ss_pred CCceeecCCCCCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eC--C--eEEEcCEEEECCCCCCc
Q 017499 147 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SE--G--ETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 147 ~sPflyp~yG~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~--g--e~i~a~~VV~~~~y~p~ 216 (370)
..|.+.|.. -.++.+.+-+..+..|..+++++.|.+|.-+ ++.+ .|. .+ | +.+.||.|+......|.
T Consensus 214 ~~~~~l~~~-d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 214 ALPAFLAAA-DEQVAKEAAKAFTKQGLDIHLGVKIGEIKTG-GKGV-SVAYTDADGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred CCCccCCcC-CHHHHHHHHHHHHHcCcEEEeCcEEEEEEEc-CCEE-EEEEEeCCCceeEEEcCEEEEccCCccC
Confidence 344444432 3567777777777899999999999999754 3333 343 23 3 57999999987766664
No 228
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=24.64 E-value=2.1e+02 Score=31.54 Aligned_cols=50 Identities=22% Similarity=0.173 Sum_probs=36.8
Q ss_pred HHHHhCcEEEcCCccceEEEcCCCcEEEEEe----------CC-----------eEEEcCEEEECCCCCCc
Q 017499 167 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----------EG-----------ETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 167 laAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----------~g-----------e~i~a~~VV~~~~y~p~ 216 (370)
.+...|..+++++.+.+|.-+++|++.+|+. +| +.+.||.||....+.|+
T Consensus 617 ~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~ 687 (752)
T PRK12778 617 HAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPN 687 (752)
T ss_pred HHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCC
Confidence 3466799999999998887666678877753 12 35889999987766654
No 229
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=24.56 E-value=2e+02 Score=29.92 Aligned_cols=51 Identities=27% Similarity=0.361 Sum_probs=39.4
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEEC
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCD 210 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~~ 210 (370)
.++.+.+.+..+.+|..+++++.|.+|..++ + ...|.. +|+.+.+|.+|..
T Consensus 267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~-~-~~~v~~~~g~~i~~d~lIlA 318 (515)
T TIGR03140 267 SQLAANLEEHIKQYPIDLMENQRAKKIETED-G-LIVVTLESGEVLKAKSVIVA 318 (515)
T ss_pred HHHHHHHHHHHHHhCCeEEcCCEEEEEEecC-C-eEEEEECCCCEEEeCEEEEC
Confidence 4678888888888999999999999887642 2 234544 7888999998853
No 230
>PRK14727 putative mercuric reductase; Provisional
Probab=24.49 E-value=2.5e+02 Score=28.93 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=41.3
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCCeEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ge~i~a~~VV~~~~y~p~ 216 (370)
.++.+.+-+.....|..+++++.|+++..++ +. ..|..+++.+.||.||......|+
T Consensus 228 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~-~~-~~v~~~~g~i~aD~VlvA~G~~pn 284 (479)
T PRK14727 228 PLLGETLTACFEKEGIEVLNNTQASLVEHDD-NG-FVLTTGHGELRAEKLLISTGRHAN 284 (479)
T ss_pred HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC-CE-EEEEEcCCeEEeCEEEEccCCCCC
Confidence 3566777777788999999999999987542 32 234445556899999977666654
No 231
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=24.18 E-value=2.7e+02 Score=28.36 Aligned_cols=57 Identities=9% Similarity=0.023 Sum_probs=41.3
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeCC--eEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG--ETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~g--e~i~a~~VV~~~~y~p~ 216 (370)
.++.+.+.+..+..|..+++++.|.+|.-+ ++ ..-+..+| +.+.||.||.....-|.
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~-~v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSY-KK-QALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEc-CC-EEEEEECCceEEEEeCEEEEecCCccC
Confidence 467888888888899999999999988643 22 22333445 46899999976655553
No 232
>PTZ00052 thioredoxin reductase; Provisional
Probab=24.13 E-value=2.4e+02 Score=29.35 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~~y~p~ 216 (370)
++.+.+-+.....|..+++++.+.++.-. ++. ..|. .+|+.+.+|.||......|.
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~-~~~-~~v~~~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM-DDK-IKVLFSDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEc-CCe-EEEEECCCCEEEcCEEEEeeCCCCC
Confidence 56777777778899999999999888643 233 2344 37888999999987766664
No 233
>PRK06126 hypothetical protein; Provisional
Probab=24.05 E-value=1.9e+02 Score=30.19 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHH-hCcEEEcCCccceEEEcCCCcEEEE-Ee--CCe--EEEcCEEEE
Q 017499 159 ELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGV-TS--EGE--TAKCKKVVC 209 (370)
Q Consensus 159 eI~Qaf~RlaAv-~Gg~y~L~~~V~~I~~~~~~~~~gV-~~--~ge--~i~a~~VV~ 209 (370)
.+-+.+...++. .|+.+++++.|.++..+++ .+... .. +|+ +++||+||+
T Consensus 127 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~-~v~v~~~~~~~g~~~~i~ad~vVg 182 (545)
T PRK06126 127 YLEPILLEHAAAQPGVTLRYGHRLTDFEQDAD-GVTATVEDLDGGESLTIRADYLVG 182 (545)
T ss_pred HHHHHHHHHHHhCCCceEEeccEEEEEEECCC-eEEEEEEECCCCcEEEEEEEEEEe
Confidence 456666666655 4789999999999987543 34322 21 354 689999995
No 234
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=23.00 E-value=63 Score=21.83 Aligned_cols=16 Identities=6% Similarity=0.092 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHHHHHH
Q 017499 57 MGIFEKRRARKFFIYV 72 (370)
Q Consensus 57 ls~~eKr~lmkFL~~v 72 (370)
+.-++||++|+||..-
T Consensus 3 VPdm~RR~lmN~ll~G 18 (39)
T PF08802_consen 3 VPDMSRRQLMNLLLGG 18 (39)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHh
Confidence 3446999999999863
No 235
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=22.63 E-value=1.7e+02 Score=29.29 Aligned_cols=48 Identities=19% Similarity=0.345 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEEC
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCD 210 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~ 210 (370)
+|-+++.+.+. ++.+++++.|.+|..+++ .+ .|. .+|+++.||.||+.
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~-~~-~v~~~~g~~~~ad~vVgA 154 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQAE-EV-QVLFTDGTEYRCDLLIGA 154 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecCC-cE-EEEEcCCCEEEeeEEEEC
Confidence 56667766553 456789999999976433 33 354 48889999999964
No 236
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=22.32 E-value=2.3e+02 Score=32.48 Aligned_cols=51 Identities=22% Similarity=0.378 Sum_probs=36.8
Q ss_pred HHHHHhCcEEEcCCccceEEEcCCCcEEEEEe----------CC----------eEEEcCEEEECCCCCCc
Q 017499 166 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----------EG----------ETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 166 RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~----------~g----------e~i~a~~VV~~~~y~p~ 216 (370)
+.+...|..+++++.+.+|..+++|++.+|+. +| +.+.||.||....+.|+
T Consensus 617 ~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~ 687 (1006)
T PRK12775 617 RHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKAN 687 (1006)
T ss_pred HHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCC
Confidence 34556788888888888887666788887752 12 36899999987665553
No 237
>PF04942 CC: CC domain; InterPro: IPR007026 This short domain contains four conserved cysteines that are probably required for the formation of two disulphide bonds. The domain is only found in proteins from Caenorhabditis species. The domain is named after the characteristic CC motif.
Probab=22.26 E-value=53 Score=21.65 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=9.5
Q ss_pred ccccCCCcEEE
Q 017499 268 HNVAPKGKFIA 278 (370)
Q Consensus 268 ~~~cP~G~~i~ 278 (370)
-|+||.|+.++
T Consensus 17 ~G~CP~G~~~i 27 (36)
T PF04942_consen 17 NGVCPSGYTVI 27 (36)
T ss_pred CCcCCCCCEEE
Confidence 48999999876
No 238
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=21.67 E-value=4.5e+02 Score=27.14 Aligned_cols=106 Identities=25% Similarity=0.299 Sum_probs=61.9
Q ss_pred CCcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe---CCeEEEcC---EEEECCCCC-------CccccccCe
Q 017499 157 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGETAKCK---KVVCDPSYL-------PNKVRKVGR 223 (370)
Q Consensus 157 ~geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~---~ge~i~a~---~VV~~~~y~-------p~~~~~~~~ 223 (370)
.|...|-+-+.++-.--+-+-.-.|.+++- |+|.++||+. +|+.+++. -||||.=|- ++++.+...
T Consensus 146 nGRFvq~lR~ka~slpNV~~eeGtV~sLle-e~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~V~S 224 (509)
T KOG1298|consen 146 NGRFVQRLRKKAASLPNVRLEEGTVKSLLE-EEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEEVPS 224 (509)
T ss_pred ccHHHHHHHHHHhcCCCeEEeeeeHHHHHh-ccCeEEeEEEecCCCceEEEecceEEEecchhHHHHHHhcCCcccccch
Confidence 578899998888876655556666777765 4789999984 46655544 388887543 122222222
Q ss_pred EEEEEEeecCCCCCCCCCCeEEEEeCCCccCCCCCEEEEEecCCcccc
Q 017499 224 VARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVA 271 (370)
Q Consensus 224 v~R~i~I~~~pi~~~~~~~s~~ii~P~~~~~~~~~v~v~~~~~~~~~c 271 (370)
.--+...-|.+++. +....+|+- ...+|-+.+.||+.--|
T Consensus 225 ~fVG~vl~N~~l~~---p~hghvIL~-----~pspil~Y~ISStEvRc 264 (509)
T KOG1298|consen 225 YFVGLVLKNCRLPA---PNHGHVILS-----KPSPILVYQISSTEVRC 264 (509)
T ss_pred heeeeeecCCCCCC---CCcceEEec-----CCCcEEEEEecchheEE
Confidence 22222333333332 334445552 34578888888866555
No 239
>PRK06753 hypothetical protein; Provisional
Probab=21.42 E-value=1.8e+02 Score=28.43 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECCC
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPS 212 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~~ 212 (370)
.+-+.+-+.+. +..++.++.|.+|..+ ++.+ .|. .+|+.++||.||+...
T Consensus 99 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~~~~vigadG 149 (373)
T PRK06753 99 TLIDIIKSYVK--EDAIFTGKEVTKIENE-TDKV-TIHFADGESEAFDLCIGADG 149 (373)
T ss_pred HHHHHHHHhCC--CceEEECCEEEEEEec-CCcE-EEEECCCCEEecCEEEECCC
Confidence 45555544332 4678999999999754 3443 344 4789999999996433
No 240
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=21.15 E-value=74 Score=35.45 Aligned_cols=31 Identities=45% Similarity=0.610 Sum_probs=26.1
Q ss_pred CCceeecCCC-CCcHHHHHHHHHHHhCcEEEcC
Q 017499 147 GSPYIYPLYG-LGELPQAFARLSAVYGGTYMLN 178 (370)
Q Consensus 147 ~sPflyp~yG-~geI~Qaf~RlaAv~Gg~y~L~ 178 (370)
+--+|+|=|| ++|=+| |+|.|+..|-+|+=-
T Consensus 80 gaDaIhPGYGfLSEn~e-fA~~c~eaGI~FIGP 111 (1149)
T COG1038 80 GADAIHPGYGFLSENPE-FARACAEAGITFIGP 111 (1149)
T ss_pred CCCeecCCcccccCCHH-HHHHHHHcCCEEeCC
Confidence 5558899999 888776 899999999999643
No 241
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=21.08 E-value=2.2e+02 Score=27.02 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEeC
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE 198 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~~ 198 (370)
|.+-.++-.+-..|+.+..+..|+.+.+.++.++.||..|
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvN 149 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVN 149 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEe
Confidence 5555555556668899999999999998754489998654
No 242
>PF09118 DUF1929: Domain of unknown function (DUF1929); InterPro: IPR015202 This domain adopts a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase []. ; PDB: 2JKX_A 2EIC_A 1K3I_A 1GOH_A 2EIB_A 2WQ8_A 2VZ1_A 1GOF_A 2VZ3_A 1GOG_A ....
Probab=21.01 E-value=82 Score=25.41 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=14.6
Q ss_pred EEEecCCccccCCCcEEEEEEe
Q 017499 261 LFCCSYSHNVAPKGKFIAFVST 282 (370)
Q Consensus 261 v~~~~~~~~~cP~G~~i~~~st 282 (370)
.+..-.+.+++|+|+|.+++-.
T Consensus 64 ~v~~P~~~~vaPPG~YmLFvv~ 85 (98)
T PF09118_consen 64 TVTAPPNPNVAPPGYYMLFVVN 85 (98)
T ss_dssp EEE--S-TTTS-SEEEEEEEEE
T ss_pred EEECCCCCccCCCcCEEEEEEc
Confidence 3456677899999999998865
No 243
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=20.88 E-value=2.5e+02 Score=27.77 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-C------C--eEEEcCEEEEC
Q 017499 159 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E------G--ETAKCKKVVCD 210 (370)
Q Consensus 159 eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~------g--e~i~a~~VV~~ 210 (370)
.+-+.+.+.++..|++++.+ .|.++..+ ++.+ .|.. + | +++.||.||..
T Consensus 93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~-~~~~-~v~~~~~~~~~~~~~~~i~a~~VI~A 150 (388)
T TIGR02023 93 VFDSYLRERAQKAGAELIHG-LFLKLERD-RDGV-TLTYRTPKKGAGGEKGSVEADVVIGA 150 (388)
T ss_pred HHHHHHHHHHHhCCCEEEee-EEEEEEEc-CCeE-EEEEEeccccCCCcceEEEeCEEEEC
Confidence 56677888888899999655 58888764 3333 3432 2 2 47899999953
No 244
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=20.75 E-value=99 Score=33.00 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=37.2
Q ss_pred HHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeEEEcCEEEE-CCCCC
Q 017499 162 QAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVC-DPSYL 214 (370)
Q Consensus 162 Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~i~a~~VV~-~~~y~ 214 (370)
+.|-+...-.-....+...|++++++++.+++||.+ +|..+.|+.||. ...|+
T Consensus 104 ~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL 158 (621)
T COG0445 104 RAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFL 158 (621)
T ss_pred HHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecccc
Confidence 344444455556666667788888853346999997 799999999885 45666
No 245
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=20.56 E-value=4.4e+02 Score=26.51 Aligned_cols=109 Identities=19% Similarity=0.265 Sum_probs=60.3
Q ss_pred chhhHHHHHHHcCCChhHHHHHHHhhhcccCCCcCCcchHHHHHHHHHHHHhhhcccCCCceeec-CCCCCcHHHHHHHH
Q 017499 89 TRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYP-LYGLGELPQAFARL 167 (370)
Q Consensus 89 ~~~~~~~~~~~~~L~~~l~~~i~~alal~~~~~~~~~~~~~~l~ri~~yl~S~g~y~G~sPflyp-~yG~geI~Qaf~Rl 167 (370)
...++.+++++.++++.+++-+..+..-. +|-... .|..+....+.= |..+=+|. .+|...|+++|-+
T Consensus 68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRv---NYgQ~~------~i~a~~G~vSla-~a~~gl~sV~GGN~qI~~~ll~- 136 (368)
T PF07156_consen 68 TKVTGEEYLKENGISERFINELVQAATRV---NYGQNV------NIHAFAGLVSLA-GATGGLWSVEGGNWQIFEGLLE- 136 (368)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhheEe---eccccc------chhhhhhheeee-eccCCceEecCCHHHHHHHHHH-
Confidence 34577788888888988887665554332 333211 133333322333 43333444 5567677666655
Q ss_pred HHHhCcEEEcCCccceEE-EcCCCc-EEEEEe---CCeEEE-cCEEEE-CC
Q 017499 168 SAVYGGTYMLNKPECKVE-FDEEGK-VVGVTS---EGETAK-CKKVVC-DP 211 (370)
Q Consensus 168 aAv~Gg~y~L~~~V~~I~-~~~~~~-~~gV~~---~ge~i~-a~~VV~-~~ 211 (370)
.-|+.. ||+.|.+|. ...++. ...|.. .+.... .|.||. .|
T Consensus 137 --~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtP 184 (368)
T PF07156_consen 137 --ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATP 184 (368)
T ss_pred --HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCC
Confidence 577889 999999993 322332 334432 222233 488774 44
No 246
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=20.54 E-value=2e+02 Score=28.95 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=52.4
Q ss_pred CCCceeecCCC---CC-cHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEEe-CCeE--EEcCE-EEECCCCCCc
Q 017499 146 GGSPYIYPLYG---LG-ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGET--AKCKK-VVCDPSYLPN 216 (370)
Q Consensus 146 G~sPflyp~yG---~g-eI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~~-~ge~--i~a~~-VV~~~~y~p~ 216 (370)
|-.=|+.|..= +| .+-+.+-|...-.||..|-+-+|.+..+. +|++..|-+ |+.. ++||. |..+.+|+.+
T Consensus 242 ~~~l~elPtlPPSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~trn~~diP~~a~~~VLAsGsffsk 319 (421)
T COG3075 242 GLALFELPTLPPSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATCK-GGRVTEIYTRNHADIPLRADFYVLASGSFFSK 319 (421)
T ss_pred CCceeecCCCCcchhhhhHHHHHHHHHHHcCceEecCCceeeeeee-CCeEEEEEecccccCCCChhHeeeeccccccc
Confidence 33445566552 22 68889999999999999999999988874 789999987 5544 56765 5578899964
No 247
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=20.26 E-value=2.7e+02 Score=28.28 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=40.9
Q ss_pred CcHHHHHHHHHHHhCcEEEcCCccceEEEcCCCcEEEEE-eCCeEEEcCEEEECCCCCCc
Q 017499 158 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSYLPN 216 (370)
Q Consensus 158 geI~Qaf~RlaAv~Gg~y~L~~~V~~I~~~~~~~~~gV~-~~ge~i~a~~VV~~~~y~p~ 216 (370)
.++.+.+.+..+..|..+++++.|.++. +. .|. .+|+.+.||.|+.....-|.
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~---~~---~v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAIN---GN---EVTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEe---CC---EEEECCCCEEEeCEEEECcCCCcC
Confidence 3677788888888999999999999884 12 244 36888999999987666653
Done!