BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017500
(370 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 167 bits (424), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 176/327 (53%), Gaps = 27/327 (8%)
Query: 33 VKGLVDAGIVNIPRIFIRPPEEL-------VEELTSHQTNFQVPVIDLDGVRGNN---LE 82
V+ L +GI++IP+ +IRP EEL +EE + QVP IDL + ++ E
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEE--KKEDGPQVPTIDLKNIESDDEKIRE 64
Query: 83 EIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVR- 141
+++++ A+ WG ++NHGIP +++E + + +F L VE K+++ T ++
Sbjct: 65 NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 124
Query: 142 FNSNFDLHYSRTANWRDTLTISTLASTNLDPNEYPEVCRD---AAREYIKNVTKLAETLF 198
+ S + S W D D + +P+ D A EY K + LA +F
Sbjct: 125 YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVF 184
Query: 199 ELLSLALGLKAEHL-LEIGCPKEYILLCQ--YYPPCPQPDLTLGATGHSDPSFLTILLQD 255
+ LS+ LGL+ + L E+G +E +L + YYP CPQP+L LG H+D S LT +L +
Sbjct: 185 KALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN 244
Query: 256 QIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCF 315
+ GLQ+F++ +WV + + +V++IGD L+I+SN K+KS+ HR + ++ R+S F
Sbjct: 245 MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVF 304
Query: 316 FMGHNAEIPKS---YGPIKELTSAENP 339
E PK P+ E+ S E+P
Sbjct: 305 -----CEPPKDKIVLKPLPEMVSVESP 326
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 167 bits (423), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 176/327 (53%), Gaps = 27/327 (8%)
Query: 33 VKGLVDAGIVNIPRIFIRPPEEL-------VEELTSHQTNFQVPVIDLDGVRGNN---LE 82
V+ L +GI++IP+ +IRP EEL +EE + QVP IDL + ++ E
Sbjct: 6 VESLAKSGIISIPKEYIRPKEELESINDVFLEE--KKEDGPQVPTIDLKNIESDDEKIRE 63
Query: 83 EIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVR- 141
+++++ A+ WG ++NHGIP +++E + + +F L VE K+++ T ++
Sbjct: 64 NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 123
Query: 142 FNSNFDLHYSRTANWRDTLTISTLASTNLDPNEYPEVCRD---AAREYIKNVTKLAETLF 198
+ S + S W D D + +P+ D A EY K + LA +F
Sbjct: 124 YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVF 183
Query: 199 ELLSLALGLKAEHL-LEIGCPKEYILLCQ--YYPPCPQPDLTLGATGHSDPSFLTILLQD 255
+ LS+ LGL+ + L E+G +E +L + YYP CPQP+L LG H+D S LT +L +
Sbjct: 184 KALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN 243
Query: 256 QIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCF 315
+ GLQ+F++ +WV + + +V++IGD L+I+SN K+KS+ HR + ++ R+S F
Sbjct: 244 MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVF 303
Query: 316 FMGHNAEIPKS---YGPIKELTSAENP 339
E PK P+ E+ S E+P
Sbjct: 304 -----CEPPKDKIVLKPLPEMVSVESP 325
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 173/327 (52%), Gaps = 27/327 (8%)
Query: 33 VKGLVDAGIVNIPRIFIRPPEEL-------VEELTSHQTNFQVPVIDLDGVRGNN---LE 82
V+ L +GI++IP+ +IRP EEL +EE + QVP IDL + ++ E
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEE--KKEDGPQVPTIDLKNIESDDEKIRE 64
Query: 83 EIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVR- 141
+++++ A+ WG ++NHGIP ++ E + + +F L VE K+++ T ++
Sbjct: 65 NCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 124
Query: 142 FNSNFDLHYSRTANWRDTLTISTLASTNLDPNEYPEVCRD---AAREYIKNVTKLAETLF 198
+ S + S W D D + +P+ D A EY K + LA +F
Sbjct: 125 YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVF 184
Query: 199 ELLSLALGLKAEHL-LEIGCPKEYILLCQ--YYPPCPQPDLTLGATGHSDPSFLTILLQD 255
+ LS+ LGL+ + L E+G +E +L + YYP CPQP+L LG H+D S LT +L +
Sbjct: 185 KALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHN 244
Query: 256 QIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCF 315
+ GLQ+F++ +WV + + +V +IGD L+I+SN K+KS+ HR + ++ R+S F
Sbjct: 245 XVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVF 304
Query: 316 FMGHNAEIPKS---YGPIKELTSAENP 339
E PK P+ E S E+P
Sbjct: 305 -----CEPPKDKIVLKPLPEXVSVESP 326
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 145/291 (49%), Gaps = 19/291 (6%)
Query: 69 PVIDLDGVRGNNLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISK--FNELDVE 126
P+I LD V G + ++ A E WGFF++VNHGIP V + +E +K + + +
Sbjct: 5 PIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXD-TVEKXTKGHYKKCXEQ 63
Query: 127 LKKEFYTRDQTRNVRFNSNFDLHYSRTANWRDTLTISTLASTNLDPNEYP---EVCRDAA 183
KE V+ +W T + L +N+ +E P E R+
Sbjct: 64 RFKELVASKALEGVQAEVT-------DXDWESTFFLKHLPISNI--SEVPDLDEEYREVX 114
Query: 184 REYIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKE---YILLCQYYPPCPQPDLTLGA 240
R++ K + KLAE L +LL LGL+ +L + + YPPCP+PDL G
Sbjct: 115 RDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGL 174
Query: 241 TGHSDPSFLTILLQD-QIGGLQVFHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKH 299
H+D + +L QD ++ GLQ+ D QW+ V P +VVN+GD L++I+N K+KSV H
Sbjct: 175 RAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXH 234
Query: 300 RVVASQVGPRVSVPCFFMGHNAEIPKSYGPIKELTSAENPPIYRDFLASEY 350
RV+A + G R S+ F+ + + + E + EN +Y F+ +Y
Sbjct: 235 RVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 126/300 (42%), Gaps = 25/300 (8%)
Query: 78 GNNLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFY-TRDQ 136
+ ++ A+ E +GF + ++ + ++ ++ F L VE KK++ +
Sbjct: 16 AKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGG 75
Query: 137 TRN-----VRFNSNFDLHYSRTANWRDTLTI------STLASTNLDPNEYPEVCRDAARE 185
R V D HY W + + N+ P E P D +
Sbjct: 76 ARGYIPFGVETAKGAD-HYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWL 134
Query: 186 YIKNVTKLAETLFELLSLALGLKAEHLLEIGCPKEYILLCQYYPPCPQPDLTLGATGHSD 245
Y ++ + E ++ L L+ + +L +YPP P+ + A H D
Sbjct: 135 Y-NSLDGXGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGD 193
Query: 246 PSFLTILLQDQIGGLQVF-HDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVV-- 302
+ +T+LL + GGL+V D QW+ + P G LV+NIGD L+ ++N+ S HRVV
Sbjct: 194 INTITLLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNP 253
Query: 303 --ASQVGPRVSVPCFF-MGHNAEIPKSYGPIKELTSAENPPIYRDFL-ASEYFSKRFSTV 358
+ PR S P F + EI ++ +AENP Y + + A E+ +R +
Sbjct: 254 PPERRGVPRYSTPFFLHFASDYEIKT----LQNCVTAENPDRYPESITADEFLQQRLREI 309
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 131/318 (41%), Gaps = 48/318 (15%)
Query: 68 VPVIDLDGVRGNNLE---EIVDQVRAAAETWGFFQVVNHGIPLNVL----EEMIEGISKF 120
VP ID+ + G++ + Q+ AA+ GFF VNHGI + L +E I+
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPE 68
Query: 121 NELDVELKKEFYTRDQTRNVR------------------FNSNFDLHYSRTANWRDTLTI 162
+ D+ ++ Y ++ VR N NF + R T +
Sbjct: 69 EKWDLAIRA--YNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEV 126
Query: 163 STLASTNLDPNEYPEVCRDAAREYIKNVTKLAETLFELLSLALGLK----AEHLLEIGCP 218
+ P +D A +Y +V L+ L + +LALG + A H
Sbjct: 127 NVWPDETKHPG-----FQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTL 181
Query: 219 KEYILL-CQYYPPCPQPDLTLGATG-------HSDPSFLTILLQDQIGGLQVFHDNQWVG 270
+L+ Y P P+ + A G H D S +T+L Q + LQV +
Sbjct: 182 ASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQD 241
Query: 271 VQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCFF-MGHNAEIPKSYGP 329
++ G ++N G ++ ++N+ +K+ HRV R S+P F +G+++ I + P
Sbjct: 242 IEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVN-AERQSLPFFVNLGYDSVI-DPFDP 299
Query: 330 IKELTSAENPPI-YRDFL 346
+ ++ P+ Y D+L
Sbjct: 300 REPNGKSDREPLSYGDYL 317
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 131/318 (41%), Gaps = 48/318 (15%)
Query: 68 VPVIDLDGVRGNNLE---EIVDQVRAAAETWGFFQVVNHGIPLNVL----EEMIEGISKF 120
VP ID+ + G++ + Q+ AA+ GFF VNHGI + L +E I+
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPE 68
Query: 121 NELDVELKKEFYTRDQTRNVR------------------FNSNFDLHYSRTANWRDTLTI 162
+ D+ ++ Y ++ VR N NF + R T +
Sbjct: 69 EKWDLAIRA--YNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEV 126
Query: 163 STLASTNLDPNEYPEVCRDAAREYIKNVTKLAETLFELLSLALGLK----AEHLLEIGCP 218
+ P +D A +Y +V L+ L + +LALG + A H
Sbjct: 127 NVWPDETKHPG-----FQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTL 181
Query: 219 KEYILL-CQYYPPCPQPDLTLGATG-------HSDPSFLTILLQDQIGGLQVFHDNQWVG 270
+L+ Y P P+ + A G H D S +T+L Q + LQV +
Sbjct: 182 ASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQD 241
Query: 271 VQPIVGGLVVNIGDFLQIISNDKFKSVKHRVVASQVGPRVSVPCFF-MGHNAEIPKSYGP 329
++ G ++N G ++ ++N+ +K+ HRV R S+P F +G+++ I + P
Sbjct: 242 IEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVN-AERQSLPFFVNLGYDSVI-DPFDP 299
Query: 330 IKELTSAENPPI-YRDFL 346
+ ++ P+ Y D+L
Sbjct: 300 REPNGKSDREPLSYGDYL 317
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 95/246 (38%), Gaps = 38/246 (15%)
Query: 96 GFFQVVNHGIPLNVLEEMIEGISKFNELDVELKKEFYTRDQTRNVRFNSNFDLHYSRTAN 155
GF + NH I ++E + F + E K EF +T + F ++ S TA
Sbjct: 26 GFGVLSNHPIDKELVERIYTEWQAF--FNSEAKNEFXFNRETHDGFFPASI----SETAK 79
Query: 156 WRDTLTISTLASTNLDPNEY---------PEVCRDAAREYIKNVTKLAETLFELLSLALG 206
T D EY P+ R Y + LA L E +
Sbjct: 80 ----------GHTVKDIKEYYHVYPWGRIPDSLRANILAYYEKANTLASELLEWIETYSP 129
Query: 207 LKAEHLLEIGCPK------EYILLCQYYPPCP--QPDLTLGATGHSDPSFLTILLQDQIG 258
+ + I P+ + +L +YPP + + A H D + +T+L
Sbjct: 130 DEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEP 189
Query: 259 GLQV-FHDNQWVGVQPIVGGLVVNIGDFLQIISNDKFKSVKHRVV----ASQVGPRVSVP 313
GLQV D W+ V G +++NIGD LQ S+ F S HRV+ + R+S+P
Sbjct: 190 GLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLP 249
Query: 314 CFFMGH 319
F H
Sbjct: 250 LFLHPH 255
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 147 DLHY---SRTANWRDTLTISTLASTNLDPNEYPEVCRDAAREYIKNVTKLAETLFELLSL 203
D HY S+T +W+ T+ ++ S+ L E EV D +I T + +L+
Sbjct: 183 DFHYVSLSKTDSWQITMKGVSVGSSTLLCEEGCEVVVDTGSSFISAPT----SSLKLIMQ 238
Query: 204 ALGLKAEHLLEIGCPKEYILLCQYYPPCPQPDLTLGATGHS 244
ALG K + L EY++ C P P LG ++
Sbjct: 239 ALGAKEKRL------HEYVVSCSQVPTLPDISFNLGGRAYT 273
>pdb|1FTR|A Chain A, Formylmethanofuran:tetrahydromethanopterin
Formyltransferase From Methanopyrus Kandleri
pdb|1FTR|B Chain B, Formylmethanofuran:tetrahydromethanopterin
Formyltransferase From Methanopyrus Kandleri
pdb|1FTR|C Chain C, Formylmethanofuran:tetrahydromethanopterin
Formyltransferase From Methanopyrus Kandleri
pdb|1FTR|D Chain D, Formylmethanofuran:tetrahydromethanopterin
Formyltransferase From Methanopyrus Kandleri
pdb|2FHJ|A Chain A, Crystal Structure Of Formylmethanofuran:
Tetrahydromethanopterin Formyltransferase In Complex
With Its Coenzymes
pdb|2FHJ|B Chain B, Crystal Structure Of Formylmethanofuran:
Tetrahydromethanopterin Formyltransferase In Complex
With Its Coenzymes
pdb|2FHJ|C Chain C, Crystal Structure Of Formylmethanofuran:
Tetrahydromethanopterin Formyltransferase In Complex
With Its Coenzymes
pdb|2FHK|A Chain A, Crystal Structure Of Formylmethanofuran:
Tetrahydromethanopterin Formyltransferase In Complex
With Its Coenzymes
pdb|2FHK|B Chain B, Crystal Structure Of Formylmethanofuran:
Tetrahydromethanopterin Formyltransferase In Complex
With Its Coenzymes
pdb|2FHK|C Chain C, Crystal Structure Of Formylmethanofuran:
Tetrahydromethanopterin Formyltransferase In Complex
With Its Coenzymes
pdb|2FHK|D Chain D, Crystal Structure Of Formylmethanofuran:
Tetrahydromethanopterin Formyltransferase In Complex
With Its Coenzymes
Length = 296
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 215 IGCPKEYILLCQYYPPCPQPDLTLGAT---GHSDPSFLTILLQDQIG 258
I CP E + C Y PP PD G T GH+D L L D+IG
Sbjct: 48 IMCPAEAGIDCGYVPPEETPDGRPGVTIMIGHNDEDELKEQLLDRIG 94
>pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana
pdb|4FL0|B Chain B, Crystal Structure Of Ald1 From Arabidopsis Thaliana
Length = 456
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 53 EELVEELTSHQTNFQVPVIDLDGVRGNNLEEIVDQVRAA-AETW 95
E + E++TSH +NF + ++G RG LE+ +R A AET+
Sbjct: 82 EPIPEQITSHMSNFAHGLSTVEGYRGYGLEQGNKTLRKAIAETF 125
>pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
The First Dsrbd Of Protein Hyl1
Length = 103
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 51 PPEELVEELTSHQTNFQVPVIDLDGVRGNNLEEIVDQVRAAAE 93
P E+V+E SH++ FQ VI LDGVR N+L + R AAE
Sbjct: 35 PVYEIVKEGPSHKSLFQSTVI-LDGVRYNSLPGFFN--RKAAE 74
>pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|B Chain B, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|C Chain C, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 73
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 51 PPEELVEELTSHQTNFQVPVIDLDGVRGNNLEEIVDQVRAAAE 93
P E+V+E SH++ FQ VI LDGVR N+L + R AAE
Sbjct: 21 PVYEIVKEGPSHKSLFQSTVI-LDGVRYNSLPGFFN--RKAAE 60
>pdb|1PHP|A Chain A, Structure Of The Adp Complex Of The 3-Phosphoglycerate
Kinase From Bacillus Stearothermophilus At 1.65
Angstroms
Length = 394
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 70 VIDLDGVRGNNLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGISKFNELDVELKK 129
V D GV N LE++ + + + F + + H + ++LEE +EL K
Sbjct: 198 VKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEED----------KIELAK 247
Query: 130 EFYTRDQTRNVRFNSNFDLHYS-RTANWRDTLTI------STLASTNLDPNEYPEVCRDA 182
F + + + VRF D+ + R AN +T + + ++ ++ P E+ RD
Sbjct: 248 SFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTR-ELYRDV 306
Query: 183 AREYIKNVTKLAETLFELLSLALGLK 208
RE V +FE+ + A G K
Sbjct: 307 IRESKLVVWNGPMGVFEMDAFAHGTK 332
>pdb|2K1W|A Chain A, Nmr Solution Structure Of M-Crystallin In Calcium Loaded
Form(Holo).
pdb|2K1X|A Chain A, Nmr Solution Structure Of M-Crystallin In Calcium Free
Form (Apo)
Length = 85
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 78 GNNLEEIVDQVRAAAETWGFFQVVNHG 104
G+NL + + ++ + TW F++ +N+G
Sbjct: 29 GDNLNDKISSIKVKSGTWRFYEYINYG 55
>pdb|3HZ2|A Chain A, Crystal Structure Of A Betagamma-Crystallin From An
Archaea
pdb|3HZ2|B Chain B, Crystal Structure Of A Betagamma-Crystallin From An
Archaea
pdb|3HZ2|C Chain C, Crystal Structure Of A Betagamma-Crystallin From An
Archaea
pdb|3HZ2|D Chain D, Crystal Structure Of A Betagamma-Crystallin From An
Archaea
Length = 84
Score = 28.5 bits (62), Expect = 5.8, Method: Composition-based stats.
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 78 GNNLEEIVDQVRAAAETWGFFQVVNHG 104
G+NL + + ++ + TW F++ +N+G
Sbjct: 28 GDNLNDKISSIKVKSGTWRFYEYINYG 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,152,596
Number of Sequences: 62578
Number of extensions: 469644
Number of successful extensions: 1190
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1160
Number of HSP's gapped (non-prelim): 18
length of query: 370
length of database: 14,973,337
effective HSP length: 100
effective length of query: 270
effective length of database: 8,715,537
effective search space: 2353194990
effective search space used: 2353194990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)