Query 017505
Match_columns 370
No_of_seqs 208 out of 1405
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 09:10:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017505.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017505hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 8.3E-98 2E-102 747.4 30.8 356 1-356 1-370 (524)
2 PLN02998 beta-glucosidase 100.0 6.9E-94 1.5E-98 734.2 30.2 332 6-337 7-341 (497)
3 PLN02849 beta-glucosidase 100.0 1.8E-93 3.9E-98 732.0 31.0 335 1-336 1-336 (503)
4 PLN02814 beta-glucosidase 100.0 3.5E-92 7.7E-97 722.7 28.7 311 25-337 23-335 (504)
5 COG2723 BglB Beta-glucosidase/ 100.0 5E-91 1.1E-95 693.8 26.9 297 28-337 2-308 (460)
6 TIGR01233 lacG 6-phospho-beta- 100.0 6.1E-88 1.3E-92 687.6 28.8 294 28-336 2-305 (467)
7 PRK13511 6-phospho-beta-galact 100.0 9.3E-88 2E-92 687.3 28.3 295 28-337 3-307 (469)
8 PRK09593 arb 6-phospho-beta-gl 100.0 1.1E-87 2.3E-92 687.1 28.7 297 27-337 3-322 (478)
9 PRK09589 celA 6-phospho-beta-g 100.0 7E-87 1.5E-91 680.8 28.9 294 29-336 3-320 (476)
10 PF00232 Glyco_hydro_1: Glycos 100.0 8.4E-88 1.8E-92 686.7 20.0 298 27-338 2-306 (455)
11 PRK15014 6-phospho-beta-glucos 100.0 4.4E-86 9.6E-91 674.6 30.7 298 26-337 2-323 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 3.3E-85 7.3E-90 667.3 28.3 294 29-336 3-318 (474)
13 TIGR03356 BGL beta-galactosida 100.0 4.6E-84 1E-88 653.5 28.2 293 30-337 1-296 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.4 6.2E-13 1.4E-17 132.9 8.7 108 80-191 10-140 (374)
15 PF00150 Cellulase: Cellulase 99.3 5.5E-12 1.2E-16 119.4 9.3 109 81-192 22-134 (281)
16 smart00633 Glyco_10 Glycosyl h 98.8 1E-08 2.2E-13 97.4 8.8 82 102-191 2-85 (254)
17 COG1874 LacA Beta-galactosidas 98.7 3E-08 6.5E-13 105.0 7.8 114 81-198 31-171 (673)
18 COG2730 BglC Endoglucanase [Ca 98.2 8.1E-06 1.8E-10 82.8 9.6 109 83-191 76-193 (407)
19 PF01229 Glyco_hydro_39: Glyco 98.1 7.9E-06 1.7E-10 84.7 9.1 106 82-192 41-168 (486)
20 PF07745 Glyco_hydro_53: Glyco 98.0 0.00013 2.8E-09 72.0 14.8 102 83-191 27-137 (332)
21 PF00331 Glyco_hydro_10: Glyco 98.0 3.2E-05 6.9E-10 76.1 9.8 123 30-192 6-137 (320)
22 PF01301 Glyco_hydro_35: Glyco 97.7 0.00014 3.1E-09 71.5 8.7 110 80-190 24-151 (319)
23 COG3867 Arabinogalactan endo-1 97.6 0.0062 1.3E-07 58.7 17.3 136 28-191 33-183 (403)
24 PF01373 Glyco_hydro_14: Glyco 97.5 0.0002 4.3E-09 71.8 6.6 99 79-180 15-144 (402)
25 PLN02803 beta-amylase 97.4 0.00061 1.3E-08 70.1 8.4 98 80-180 107-243 (548)
26 PLN00197 beta-amylase; Provisi 97.4 0.00066 1.4E-08 70.1 8.5 99 80-181 127-264 (573)
27 PLN02161 beta-amylase 97.3 0.00061 1.3E-08 69.8 8.0 102 76-180 113-253 (531)
28 PLN02801 beta-amylase 97.3 0.0014 3E-08 67.3 9.4 101 77-180 34-173 (517)
29 PLN02905 beta-amylase 97.2 0.0018 3.9E-08 67.7 9.2 101 76-179 282-421 (702)
30 PLN02705 beta-amylase 97.1 0.0025 5.5E-08 66.5 9.2 99 78-179 266-403 (681)
31 PLN03059 beta-galactosidase; P 97.0 0.0015 3.3E-08 71.0 7.3 110 80-191 59-189 (840)
32 PF13204 DUF4038: Protein of u 96.9 0.011 2.3E-07 57.5 11.2 102 83-189 33-156 (289)
33 PF14587 Glyco_hydr_30_2: O-Gl 96.8 0.0026 5.7E-08 63.6 6.9 80 111-191 95-185 (384)
34 COG3693 XynA Beta-1,4-xylanase 96.7 0.0043 9.3E-08 60.4 6.9 87 99-191 65-153 (345)
35 PF02836 Glyco_hydro_2_C: Glyc 96.2 0.021 4.5E-07 55.3 8.6 92 79-189 35-132 (298)
36 PF14488 DUF4434: Domain of un 95.5 0.086 1.9E-06 47.1 8.7 101 81-190 21-131 (166)
37 PRK10150 beta-D-glucuronidase; 95.5 0.052 1.1E-06 57.9 8.6 93 81-190 314-419 (604)
38 KOG0496 Beta-galactosidase [Ca 95.2 0.091 2E-06 55.7 9.0 109 80-190 49-176 (649)
39 PRK09525 lacZ beta-D-galactosi 92.9 0.34 7.4E-06 55.0 8.4 93 79-190 370-464 (1027)
40 PRK10340 ebgA cryptic beta-D-g 91.3 0.68 1.5E-05 52.6 8.4 90 79-190 354-451 (1021)
41 PF07488 Glyco_hydro_67M: Glyc 91.0 1.7 3.7E-05 42.4 9.5 87 79-178 56-150 (328)
42 COG3250 LacZ Beta-galactosidas 89.8 1.4 3E-05 48.7 8.9 90 77-191 318-409 (808)
43 COG3664 XynB Beta-xylosidase [ 88.6 0.77 1.7E-05 46.4 5.3 100 89-193 14-118 (428)
44 smart00642 Aamy Alpha-amylase 83.6 2.9 6.2E-05 37.2 5.9 63 79-141 18-91 (166)
45 PF03198 Glyco_hydro_72: Gluca 78.8 13 0.00028 36.6 8.9 48 81-142 54-101 (314)
46 TIGR00612 ispG_gcpE 1-hydroxy- 76.8 18 0.00039 35.9 9.3 87 72-172 74-160 (346)
47 COG3934 Endo-beta-mannanase [C 76.6 1.1 2.4E-05 46.2 1.0 109 82-191 28-150 (587)
48 PF02638 DUF187: Glycosyl hydr 76.2 11 0.00024 36.9 7.9 98 80-177 19-154 (311)
49 PRK14041 oxaloacetate decarbox 74.1 11 0.00025 39.1 7.6 97 78-191 88-209 (467)
50 PF14871 GHL6: Hypothetical gl 73.8 12 0.00027 32.0 6.6 57 84-142 4-66 (132)
51 PRK14040 oxaloacetate decarbox 73.1 12 0.00025 40.2 7.6 96 79-191 91-211 (593)
52 cd07939 DRE_TIM_NifV Streptomy 72.9 13 0.00028 35.2 7.2 79 82-174 71-150 (259)
53 cd07945 DRE_TIM_CMS Leptospira 72.0 11 0.00024 36.4 6.6 83 81-174 75-158 (280)
54 cd03174 DRE_TIM_metallolyase D 70.6 13 0.00028 34.7 6.7 80 83-174 77-157 (265)
55 KOG2233 Alpha-N-acetylglucosam 68.9 11 0.00024 39.2 5.9 111 79-189 77-248 (666)
56 PLN02361 alpha-amylase 68.7 7.7 0.00017 39.5 4.9 66 77-142 26-100 (401)
57 cd07944 DRE_TIM_HOA_like 4-hyd 68.3 20 0.00042 34.3 7.4 65 83-174 85-149 (266)
58 PLN00196 alpha-amylase; Provis 68.0 9.1 0.0002 39.4 5.3 64 79-142 43-116 (428)
59 PRK12313 glycogen branching en 67.7 20 0.00044 38.6 8.2 93 79-177 169-302 (633)
60 TIGR02090 LEU1_arch isopropylm 67.6 16 0.00034 36.7 6.8 62 81-142 72-134 (363)
61 PRK05692 hydroxymethylglutaryl 67.2 20 0.00044 34.7 7.3 86 81-175 80-167 (287)
62 PRK12858 tagatose 1,6-diphosph 67.1 20 0.00044 35.7 7.4 88 86-178 112-200 (340)
63 cd07937 DRE_TIM_PC_TC_5S Pyruv 66.8 31 0.00067 33.1 8.5 69 82-175 93-161 (275)
64 PF12876 Cellulase-like: Sugar 66.2 3.2 7E-05 32.6 1.3 19 172-190 1-22 (88)
65 TIGR02402 trehalose_TreZ malto 66.1 26 0.00056 37.2 8.4 93 78-177 109-237 (542)
66 PRK12331 oxaloacetate decarbox 65.6 24 0.00053 36.5 7.9 92 83-191 99-210 (448)
67 cd06593 GH31_xylosidase_YicI Y 65.4 37 0.00081 32.8 8.9 105 82-189 26-160 (308)
68 PLN02746 hydroxymethylglutaryl 65.0 21 0.00045 35.7 7.0 84 82-174 123-208 (347)
69 PRK05402 glycogen branching en 65.0 28 0.0006 38.3 8.6 93 79-177 264-397 (726)
70 PF00128 Alpha-amylase: Alpha 64.9 13 0.00028 34.9 5.4 57 83-141 7-73 (316)
71 PRK09441 cytoplasmic alpha-amy 64.2 13 0.00029 38.5 5.8 64 77-140 19-101 (479)
72 TIGR02403 trehalose_treC alpha 64.1 15 0.00033 38.8 6.2 59 77-141 24-96 (543)
73 PRK05799 coproporphyrinogen II 64.0 17 0.00037 36.3 6.3 95 82-193 98-196 (374)
74 TIGR02660 nifV_homocitr homoci 63.4 21 0.00046 35.7 6.8 60 82-141 74-134 (365)
75 TIGR03581 EF_0839 conserved hy 63.0 18 0.0004 33.7 5.7 78 76-165 131-230 (236)
76 PRK12581 oxaloacetate decarbox 62.8 26 0.00056 36.5 7.5 57 79-148 99-160 (468)
77 PRK10933 trehalose-6-phosphate 62.8 16 0.00034 38.8 6.1 64 76-141 29-102 (551)
78 cd06543 GH18_PF-ChiA-like PF-C 62.2 47 0.001 32.4 8.8 84 87-177 19-104 (294)
79 TIGR00433 bioB biotin syntheta 61.7 20 0.00043 34.3 6.1 56 82-140 122-178 (296)
80 PF10566 Glyco_hydro_97: Glyco 61.1 22 0.00048 34.4 6.2 85 57-142 10-95 (273)
81 COG0821 gcpE 1-hydroxy-2-methy 59.6 64 0.0014 32.2 9.0 85 75-173 79-163 (361)
82 TIGR03217 4OH_2_O_val_ald 4-hy 59.4 79 0.0017 31.4 10.0 55 82-149 89-145 (333)
83 PF03511 Fanconi_A: Fanconi an 58.4 7.7 0.00017 28.9 1.9 38 104-143 19-56 (64)
84 PRK11858 aksA trans-homoaconit 58.3 31 0.00067 34.8 7.0 59 83-141 78-137 (378)
85 TIGR01108 oadA oxaloacetate de 58.0 39 0.00084 36.2 8.0 92 83-191 94-205 (582)
86 PRK09505 malS alpha-amylase; R 57.9 22 0.00049 38.8 6.3 63 82-144 232-318 (683)
87 PF03659 Glyco_hydro_71: Glyco 57.9 54 0.0012 33.2 8.7 52 80-141 17-68 (386)
88 cd07948 DRE_TIM_HCS Saccharomy 57.4 17 0.00036 34.8 4.7 60 82-141 73-133 (262)
89 PF08139 LPAM_1: Prokaryotic m 57.3 7.9 0.00017 23.6 1.5 16 1-16 6-21 (25)
90 TIGR01515 branching_enzym alph 57.1 52 0.0011 35.4 8.9 93 79-177 155-288 (613)
91 cd06601 GH31_lyase_GLase GLase 56.5 59 0.0013 32.2 8.5 78 115-194 59-139 (332)
92 cd07943 DRE_TIM_HOA 4-hydroxy- 56.1 40 0.00086 32.0 7.1 65 83-174 88-152 (263)
93 PRK14705 glycogen branching en 55.8 50 0.0011 38.5 8.8 89 86-177 772-897 (1224)
94 cd07938 DRE_TIM_HMGL 3-hydroxy 55.6 49 0.0011 31.8 7.6 84 82-174 75-160 (274)
95 TIGR01210 conserved hypothetic 55.1 60 0.0013 31.8 8.3 108 83-204 117-229 (313)
96 PF12891 Glyco_hydro_44: Glyco 54.8 24 0.00053 33.4 5.2 122 119-262 23-186 (239)
97 TIGR03234 OH-pyruv-isom hydrox 54.6 31 0.00068 32.1 6.0 65 79-146 83-150 (254)
98 PRK00366 ispG 4-hydroxy-3-meth 54.1 67 0.0014 32.3 8.3 72 90-172 98-169 (360)
99 cd06602 GH31_MGAM_SI_GAA This 54.0 65 0.0014 31.9 8.4 68 123-191 69-168 (339)
100 PRK12677 xylose isomerase; Pro 54.0 88 0.0019 31.7 9.5 91 81-178 32-128 (384)
101 cd06592 GH31_glucosidase_KIAA1 53.6 77 0.0017 30.8 8.7 106 82-190 32-167 (303)
102 cd07941 DRE_TIM_LeuA3 Desulfob 53.3 43 0.00094 32.0 6.9 81 83-174 81-162 (273)
103 PRK10785 maltodextrin glucosid 53.2 30 0.00066 37.1 6.3 55 81-141 180-247 (598)
104 cd07940 DRE_TIM_IPMS 2-isoprop 53.1 39 0.00085 32.1 6.5 77 83-174 72-154 (268)
105 TIGR02456 treS_nterm trehalose 52.6 27 0.00059 36.9 5.8 56 79-140 27-96 (539)
106 cd04733 OYE_like_2_FMN Old yel 52.5 2.4E+02 0.0052 27.7 14.6 40 104-143 63-105 (338)
107 PRK09058 coproporphyrinogen II 52.0 42 0.00092 34.6 7.0 105 82-202 162-269 (449)
108 PRK08195 4-hyroxy-2-oxovalerat 51.8 56 0.0012 32.4 7.6 47 83-142 91-137 (337)
109 PRK03705 glycogen debranching 51.4 31 0.00067 37.6 6.0 54 86-140 185-262 (658)
110 cd02742 GH20_hexosaminidase Be 51.3 1.1E+02 0.0023 29.8 9.3 63 82-150 18-99 (303)
111 PLN02784 alpha-amylase 49.7 33 0.00071 38.4 5.9 66 77-142 518-592 (894)
112 cd06591 GH31_xylosidase_XylS X 49.6 1.2E+02 0.0026 29.7 9.4 79 114-193 60-164 (319)
113 TIGR02635 RhaI_grampos L-rhamn 48.6 96 0.0021 31.4 8.7 84 83-183 43-136 (378)
114 COG1523 PulA Type II secretory 48.6 35 0.00076 37.3 5.9 62 79-140 197-285 (697)
115 COG0366 AmyA Glycosidases [Car 48.4 30 0.00065 35.3 5.2 53 84-142 33-101 (505)
116 cd02803 OYE_like_FMN_family Ol 48.2 1.7E+02 0.0036 28.4 10.2 145 105-271 62-230 (327)
117 TIGR02629 L_rham_iso_rhiz L-rh 47.8 70 0.0015 32.8 7.5 87 83-183 73-170 (412)
118 PF05089 NAGLU: Alpha-N-acetyl 47.8 42 0.00091 33.4 5.8 70 119-190 94-185 (333)
119 cd06598 GH31_transferase_CtsZ 46.5 1.3E+02 0.0028 29.4 9.1 108 83-192 27-168 (317)
120 cd06599 GH31_glycosidase_Aec37 46.4 1.6E+02 0.0034 28.8 9.7 108 83-191 32-171 (317)
121 cd06600 GH31_MGAM-like This fa 46.3 1.4E+02 0.0031 29.1 9.4 78 114-192 58-164 (317)
122 COG3589 Uncharacterized conser 46.1 78 0.0017 31.6 7.3 69 86-168 22-90 (360)
123 cd06525 GH25_Lyc-like Lyc mura 46.1 1.3E+02 0.0029 26.6 8.5 22 160-181 100-121 (184)
124 PF02065 Melibiase: Melibiase; 45.3 1.3E+02 0.0028 30.6 9.1 139 82-246 60-227 (394)
125 cd06545 GH18_3CO4_chitinase Th 45.0 60 0.0013 30.4 6.3 74 99-177 26-99 (253)
126 cd06565 GH20_GcnA-like Glycosy 44.7 77 0.0017 30.8 7.2 62 82-150 19-87 (301)
127 PLN02447 1,4-alpha-glucan-bran 44.5 42 0.0009 37.1 5.7 87 85-177 256-383 (758)
128 PRK14511 maltooligosyl trehalo 44.2 46 0.001 37.4 6.1 56 79-140 19-89 (879)
129 PRK09282 pyruvate carboxylase 44.1 78 0.0017 34.0 7.6 93 82-191 98-210 (592)
130 cd06603 GH31_GANC_GANAB_alpha 43.9 1.4E+02 0.0031 29.4 9.1 79 115-193 59-167 (339)
131 PRK14510 putative bifunctional 42.5 38 0.00083 39.5 5.3 58 79-140 184-267 (1221)
132 PRK12330 oxaloacetate decarbox 42.5 82 0.0018 33.1 7.3 93 83-191 100-213 (499)
133 cd02932 OYE_YqiM_FMN Old yello 41.7 3.5E+02 0.0076 26.5 16.4 40 105-144 62-101 (336)
134 COG2100 Predicted Fe-S oxidore 41.7 84 0.0018 31.4 6.7 82 76-173 197-284 (414)
135 PF01120 Alpha_L_fucos: Alpha- 41.6 80 0.0017 31.3 6.9 59 86-144 97-162 (346)
136 PRK08446 coproporphyrinogen II 41.5 1.4E+02 0.003 29.6 8.5 93 83-191 98-193 (350)
137 PRK04161 tagatose 1,6-diphosph 41.2 49 0.0011 32.8 5.1 59 85-146 112-170 (329)
138 PLN02389 biotin synthase 41.1 73 0.0016 32.2 6.5 58 81-141 176-234 (379)
139 PRK12568 glycogen branching en 41.1 37 0.0008 37.4 4.7 93 79-177 268-401 (730)
140 PRK07094 biotin synthase; Prov 41.1 39 0.00084 32.9 4.5 62 81-146 127-190 (323)
141 COG3534 AbfA Alpha-L-arabinofu 41.0 1.5E+02 0.0033 30.8 8.7 94 82-190 50-175 (501)
142 PRK08599 coproporphyrinogen II 40.4 1.2E+02 0.0026 30.3 8.0 95 82-193 99-197 (377)
143 TIGR03471 HpnJ hopanoid biosyn 40.3 51 0.0011 34.1 5.4 59 83-146 287-348 (472)
144 cd07947 DRE_TIM_Re_CS Clostrid 40.2 66 0.0014 31.1 5.8 60 81-140 75-135 (279)
145 PRK12399 tagatose 1,6-diphosph 40.2 48 0.001 32.8 4.9 58 86-146 111-168 (324)
146 TIGR02401 trehalose_TreY malto 39.7 59 0.0013 36.3 6.0 60 79-144 15-91 (825)
147 PRK07379 coproporphyrinogen II 39.2 1.3E+02 0.0027 30.5 8.0 105 82-202 114-221 (400)
148 COG1501 Alpha-glucosidases, fa 38.1 1.2E+02 0.0026 33.8 8.1 102 91-195 293-422 (772)
149 smart00729 Elp3 Elongator prot 38.0 2E+02 0.0042 24.8 8.3 58 80-140 97-157 (216)
150 PF04914 DltD_C: DltD C-termin 37.9 88 0.0019 26.7 5.6 57 119-179 35-91 (130)
151 PRK08255 salicylyl-CoA 5-hydro 37.6 6E+02 0.013 28.1 15.8 161 89-272 440-641 (765)
152 PRK14706 glycogen branching en 37.6 1.6E+02 0.0035 31.9 8.9 90 87-177 175-299 (639)
153 PRK09997 hydroxypyruvate isome 37.6 82 0.0018 29.4 6.0 63 81-146 86-151 (258)
154 PF00682 HMGL-like: HMGL-like 36.7 91 0.002 28.7 6.1 79 83-175 66-149 (237)
155 PRK05628 coproporphyrinogen II 35.4 2.1E+02 0.0046 28.4 8.9 96 82-193 107-205 (375)
156 KOG1065 Maltase glucoamylase a 35.3 1.7E+02 0.0037 32.6 8.5 103 86-194 317-454 (805)
157 cd02874 GH18_CFLE_spore_hydrol 34.7 1.1E+02 0.0025 29.4 6.6 84 86-177 16-103 (313)
158 PRK01060 endonuclease IV; Prov 34.6 1.7E+02 0.0036 27.5 7.6 54 79-137 11-64 (281)
159 PF10566 Glyco_hydro_97: Glyco 34.5 65 0.0014 31.2 4.7 68 82-160 108-175 (273)
160 TIGR00423 radical SAM domain p 34.2 2.3E+02 0.0049 27.5 8.7 58 82-146 106-170 (309)
161 TIGR00539 hemN_rel putative ox 34.2 1.9E+02 0.0041 28.7 8.2 93 82-190 99-194 (360)
162 cd06542 GH18_EndoS-like Endo-b 34.1 1.2E+02 0.0026 28.3 6.5 55 119-177 50-104 (255)
163 PTZ00445 p36-lilke protein; Pr 34.1 73 0.0016 29.8 4.8 57 85-141 34-99 (219)
164 TIGR01232 lacD tagatose 1,6-di 33.8 1.5E+02 0.0032 29.4 7.1 59 85-146 111-169 (325)
165 PRK14507 putative bifunctional 33.4 1.1E+02 0.0025 36.9 7.3 60 79-144 757-833 (1693)
166 PRK05660 HemN family oxidoredu 33.2 2E+02 0.0042 28.9 8.2 94 82-191 106-202 (378)
167 COG5016 Pyruvate/oxaloacetate 33.0 1.6E+02 0.0035 30.3 7.3 56 78-146 91-151 (472)
168 TIGR01211 ELP3 histone acetylt 32.6 1.5E+02 0.0033 31.4 7.5 106 82-204 205-316 (522)
169 PRK13347 coproporphyrinogen II 32.5 80 0.0017 32.5 5.4 60 82-146 151-214 (453)
170 PRK08208 coproporphyrinogen II 32.5 1.5E+02 0.0032 30.3 7.3 91 82-190 140-235 (430)
171 PF01055 Glyco_hydro_31: Glyco 32.4 1.6E+02 0.0036 29.8 7.6 108 82-192 45-184 (441)
172 TIGR00542 hxl6Piso_put hexulos 32.3 67 0.0015 30.4 4.5 60 79-140 93-153 (279)
173 PRK09856 fructoselysine 3-epim 32.2 56 0.0012 30.6 3.9 60 79-139 89-148 (275)
174 PLN02960 alpha-amylase 32.1 81 0.0018 35.5 5.5 95 77-177 413-549 (897)
175 TIGR02100 glgX_debranch glycog 31.9 86 0.0019 34.4 5.7 56 86-141 190-266 (688)
176 cd06568 GH20_SpHex_like A subg 31.9 1.7E+02 0.0036 28.9 7.3 63 82-150 20-102 (329)
177 TIGR02631 xylA_Arthro xylose i 31.2 4.2E+02 0.009 26.8 10.2 98 75-179 27-130 (382)
178 PLN02925 4-hydroxy-3-methylbut 31.2 1.5E+02 0.0032 32.6 7.1 51 122-173 212-262 (733)
179 PRK09389 (R)-citramalate synth 30.9 1.4E+02 0.0031 31.2 6.9 106 82-191 75-199 (488)
180 cd06604 GH31_glucosidase_II_Ma 30.8 3.5E+02 0.0076 26.6 9.4 69 122-192 66-163 (339)
181 TIGR01212 radical SAM protein, 30.5 1.7E+02 0.0038 28.3 7.1 72 119-203 162-233 (302)
182 PRK10426 alpha-glucosidase; Pr 30.2 4E+02 0.0087 28.9 10.4 106 82-189 223-364 (635)
183 TIGR01589 A_thal_3526 uncharac 30.0 43 0.00094 24.6 2.1 36 123-169 19-55 (57)
184 TIGR00538 hemN oxygen-independ 29.5 95 0.0021 32.0 5.3 60 82-146 150-213 (455)
185 PRK08508 biotin synthase; Prov 29.5 1E+02 0.0022 29.6 5.2 56 82-140 101-157 (279)
186 KOG0696 Serine/threonine prote 29.4 1.2E+02 0.0026 31.5 5.8 116 219-337 555-680 (683)
187 PF02057 Glyco_hydro_59: Glyco 28.8 93 0.002 33.9 5.2 65 124-191 116-185 (669)
188 PF09713 A_thal_3526: Plant pr 28.7 33 0.00072 24.9 1.3 36 123-169 16-52 (54)
189 PRK06256 biotin synthase; Vali 28.7 86 0.0019 30.7 4.7 57 81-140 150-207 (336)
190 PF01261 AP_endonuc_2: Xylose 28.7 39 0.00084 29.7 2.1 61 79-139 70-131 (213)
191 cd06564 GH20_DspB_LnbB-like Gl 28.2 5.6E+02 0.012 25.0 10.3 63 82-150 19-109 (326)
192 PRK13398 3-deoxy-7-phosphohept 27.8 1.8E+02 0.004 27.8 6.6 72 76-150 37-108 (266)
193 cd00019 AP2Ec AP endonuclease 27.8 2.5E+02 0.0055 26.3 7.6 55 80-139 10-65 (279)
194 PF11790 Glyco_hydro_cc: Glyco 27.5 48 0.001 31.0 2.6 24 167-191 54-77 (239)
195 cd06589 GH31 The enzymes of gl 27.0 2.4E+02 0.0052 26.6 7.3 90 83-192 27-120 (265)
196 PF07071 DUF1341: Protein of u 26.4 1.6E+02 0.0035 27.3 5.6 49 77-136 132-180 (218)
197 TIGR00674 dapA dihydrodipicoli 26.4 3.2E+02 0.007 26.0 8.1 67 111-191 13-79 (285)
198 TIGR01856 hisJ_fam histidinol 26.3 1.7E+02 0.0038 27.4 6.1 59 121-181 16-77 (253)
199 PRK06294 coproporphyrinogen II 25.8 3.1E+02 0.0067 27.4 8.1 94 82-192 102-199 (370)
200 PRK13210 putative L-xylulose 5 25.3 96 0.0021 29.1 4.2 59 80-140 94-153 (284)
201 TIGR02026 BchE magnesium-proto 25.2 1.1E+02 0.0025 31.8 5.1 60 82-146 286-348 (497)
202 PF04055 Radical_SAM: Radical 25.0 81 0.0018 26.0 3.3 52 83-136 90-143 (166)
203 PF10107 Endonuc_Holl: Endonuc 24.8 42 0.00091 29.6 1.5 43 287-331 71-113 (156)
204 cd06570 GH20_chitobiase-like_1 24.7 2.5E+02 0.0055 27.5 7.1 62 82-149 20-94 (311)
205 TIGR00542 hxl6Piso_put hexulos 24.6 3.8E+02 0.0083 25.1 8.3 55 80-138 16-70 (279)
206 PRK05904 coproporphyrinogen II 24.2 4.3E+02 0.0093 26.3 8.8 92 83-191 103-198 (353)
207 PF03932 CutC: CutC family; I 23.9 99 0.0022 28.5 3.8 43 79-130 71-113 (201)
208 smart00052 EAL Putative diguan 23.4 1.6E+02 0.0036 26.3 5.3 62 73-139 148-209 (241)
209 PRK13209 L-xylulose 5-phosphat 23.0 4.6E+02 0.0099 24.5 8.4 54 81-138 22-75 (283)
210 cd07938 DRE_TIM_HMGL 3-hydroxy 22.9 6.7E+02 0.015 23.9 10.0 80 80-178 114-193 (274)
211 cd01335 Radical_SAM Radical SA 22.9 1E+02 0.0023 26.1 3.7 57 82-141 87-146 (204)
212 PRK05692 hydroxymethylglutaryl 22.7 6.3E+02 0.014 24.3 9.3 81 79-178 119-199 (287)
213 PRK09249 coproporphyrinogen II 22.5 1.6E+02 0.0035 30.3 5.5 60 83-146 151-213 (453)
214 PF13200 DUF4015: Putative gly 22.5 2.2E+02 0.0048 28.2 6.2 95 80-175 13-136 (316)
215 PRK08207 coproporphyrinogen II 22.4 92 0.002 32.6 3.7 87 83-185 269-358 (488)
216 PRK13210 putative L-xylulose 5 22.3 4.8E+02 0.01 24.2 8.4 55 81-139 17-71 (284)
217 TIGR03586 PseI pseudaminic aci 22.1 1.4E+02 0.0029 29.7 4.6 64 79-142 16-99 (327)
218 PF04646 DUF604: Protein of un 21.7 36 0.00078 32.5 0.5 73 128-203 76-148 (255)
219 PRK00694 4-hydroxy-3-methylbut 21.6 2.4E+02 0.0051 30.4 6.4 54 120-174 145-198 (606)
220 PF01261 AP_endonuc_2: Xylose 21.6 1.7E+02 0.0037 25.5 4.9 45 86-138 1-45 (213)
221 cd06595 GH31_xylosidase_XylS-l 21.5 3E+02 0.0065 26.5 6.9 78 114-192 68-163 (292)
222 PF04028 DUF374: Domain of unk 21.5 2.5E+02 0.0054 21.5 5.0 40 87-140 27-66 (74)
223 cd00950 DHDPS Dihydrodipicolin 21.5 4.2E+02 0.009 25.1 7.8 66 111-190 15-80 (284)
224 TIGR02159 PA_CoA_Oxy4 phenylac 21.4 98 0.0021 27.0 3.1 56 73-137 35-91 (146)
225 PRK10658 putative alpha-glucos 21.3 5.6E+02 0.012 28.0 9.5 102 86-189 289-419 (665)
226 PRK13209 L-xylulose 5-phosphat 21.2 1.2E+02 0.0025 28.6 3.9 56 80-140 99-158 (283)
227 PF13812 PPR_3: Pentatricopept 21.1 90 0.002 18.7 2.2 15 122-136 20-34 (34)
228 PRK08208 coproporphyrinogen II 21.0 2.4E+02 0.0052 28.8 6.4 70 75-147 203-277 (430)
229 PRK06582 coproporphyrinogen II 20.9 3.6E+02 0.0079 27.2 7.6 94 83-192 111-206 (390)
230 PTZ00445 p36-lilke protein; Pr 20.9 1.6E+02 0.0035 27.5 4.6 65 120-190 29-103 (219)
231 PRK05660 HemN family oxidoredu 20.8 3.1E+02 0.0068 27.4 7.1 72 75-147 169-245 (378)
232 PRK11572 copper homeostasis pr 20.8 1.5E+02 0.0033 28.2 4.5 42 79-129 72-113 (248)
233 PF14417 MEDS: MEDS: MEthanoge 20.7 2.2E+02 0.0048 25.4 5.4 58 79-145 104-163 (191)
234 TIGR01748 rhaA L-rhamnose isom 20.7 3.8E+02 0.0083 27.4 7.4 84 82-172 71-161 (414)
235 PRK09432 metF 5,10-methylenete 20.6 3E+02 0.0066 26.7 6.7 74 119-192 188-283 (296)
236 cd06562 GH20_HexA_HexB-like Be 20.5 2.7E+02 0.0058 27.7 6.4 62 82-150 20-97 (348)
237 PF11153 DUF2931: Protein of u 20.5 1E+02 0.0023 28.2 3.3 35 2-42 1-36 (216)
238 COG1649 Uncharacterized protei 20.5 3.3E+02 0.0072 28.0 7.1 98 80-177 64-199 (418)
239 cd01948 EAL EAL domain. This d 20.5 1.8E+02 0.0038 26.1 4.8 64 72-140 146-209 (240)
240 PRK13523 NADPH dehydrogenase N 20.4 8.3E+02 0.018 24.1 12.0 137 111-272 72-230 (337)
241 COG5520 O-Glycosyl hydrolase [ 20.4 3.1E+02 0.0068 27.8 6.6 91 91-192 77-181 (433)
242 TIGR03699 mena_SCO4550 menaqui 20.3 1.3E+02 0.0029 29.4 4.2 53 82-140 142-201 (340)
243 PRK02048 4-hydroxy-3-methylbut 20.2 2.9E+02 0.0062 29.9 6.7 54 120-174 141-194 (611)
244 PRK13347 coproporphyrinogen II 20.2 2.5E+02 0.0055 28.9 6.4 71 76-147 215-293 (453)
245 cd01990 Alpha_ANH_like_I This 20.0 3.7E+02 0.0079 23.9 6.8 57 88-144 47-106 (202)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.3e-98 Score=747.36 Aligned_cols=356 Identities=56% Similarity=0.983 Sum_probs=323.5
Q ss_pred CchHHH-HHHHHHHHHHhhhh---cc---ccCCcCCCCCCCeeeeecchhhccCCCCCCCCCCccccccccc-C-Cc--C
Q 017505 1 MMLRLS-FLLMYLLNLATSAL---TA---VEYSKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-G-NV--H 69 (370)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~~~~---~~---~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~-~-~~--~ 69 (370)
|+.+++ +++++++.++++.. +. +.+.+..||++|+||+||||||+|||+++|||++|+||.|++. + ++ .
T Consensus 1 m~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~ 80 (524)
T KOG0626|consen 1 MPLKGYSLLLLLLVFSWLSAYKSSVCPKTTKFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDG 80 (524)
T ss_pred CchHHHHHHHHHHHHHhhhccccccCcccCcccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccC
Confidence 455644 33444444555543 11 3456888999999999999999999999999999999999986 3 43 5
Q ss_pred CCCCcCCccccCcHHHHHHHHhcCCCceeecccccccccCCC--CCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcH
Q 017505 70 GTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQ 147 (370)
Q Consensus 70 ~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~--g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~ 147 (370)
.++++|||+||+|+|||+||++||+++|||||+||||+|.|+ +.+|++|+++|+++|++|+++||+|+|||+|||+|+
T Consensus 81 ~ngdva~D~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq 160 (524)
T KOG0626|consen 81 SNGDVAVDFYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQ 160 (524)
T ss_pred CCCCeechhhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCH
Confidence 678999999999999999999999999999999999999997 679999999999999999999999999999999999
Q ss_pred hHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceeEEEecCCccccccccccCCCCCCCCCCc-ccCCCCCCCChhHHHH
Q 017505 148 ALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPPQRCSSI-NHCSRGNSSTEPYITV 226 (370)
Q Consensus 148 wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~-~~~~~~~~~~~~~qa~ 226 (370)
+|+++||||+|+++++.|.+||+.||++|||+||.|+|||||++++..||..|..|||+++.. .+|..+++.++.|.|.
T Consensus 161 ~LeDeYgGwLn~~ivedF~~yA~~CF~~fGDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~ 240 (524)
T KOG0626|consen 161 ALEDEYGGWLNPEIVEDFRDYADLCFQEFGDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVA 240 (524)
T ss_pred HHHHHhccccCHHHHHHHHHHHHHHHHHhcccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHH
Confidence 999999999999999999999999999999999999999999999999999999999999764 5799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCcceEEeeeCCccccCCCcHHHHHHHHHHHhcccccccccccccCCCchhHHhhcCCC
Q 017505 227 HHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRL 306 (370)
Q Consensus 227 hnlllAHA~Av~~~re~~~~~~~~kIG~~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~~ 306 (370)
|||++|||+||+++|++++..|+|+||+++...|+.|++++++|.+||+|+.+|..+|+++|++.|+||+.|++.+++||
T Consensus 241 HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rL 320 (524)
T KOG0626|consen 241 HNLLLAHAAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRL 320 (524)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCeEeEEEeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccC
Confidence 99999999999999999887889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHhcCCCcEEEEecccCceeecCCCCCccCCCCccCCCceEE
Q 017505 307 PAFSDRESKQVKGSADFLGVINYYIVYVKDNPSSLNKKLRDWNADSATEI 356 (370)
Q Consensus 307 p~~t~eD~~~ik~~~DFiGiNYY~s~~v~~~~~~~~~~~~~~~~~~~~~~ 356 (370)
|+||++|.+.|||+.||||||||++.+++.......+..+++..|..+..
T Consensus 321 P~FT~ee~~~lKGS~DFvGiNyYts~~~~~~~~~~~~~~~~~~~d~~~~~ 370 (524)
T KOG0626|consen 321 PKFTEEESKLLKGSYDFVGINYYTSRYVKHLKPPPDPSQPGWSTDSGVDW 370 (524)
T ss_pred CCCCHHHHHHhcCchhhceeehhhhhhhhccCCCCCCCCcccccccceee
Confidence 99999999999999999999999999999765434344566777776666
No 2
>PLN02998 beta-glucosidase
Probab=100.00 E-value=6.9e-94 Score=734.22 Aligned_cols=332 Identities=68% Similarity=1.222 Sum_probs=303.7
Q ss_pred HHHHHHHHHHHhhhhccccCCcCCCCCCCeeeeecchhhccCCCCCCCCCCcccccccccCCcC-CCCCcCCccccCcHH
Q 017505 6 SFLLMYLLNLATSALTAVEYSKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVH-GTGDIACDGYHKYKE 84 (370)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~-~~~~~a~d~y~~~~e 84 (370)
++..+-||++++...++..+.+.+||++|+||+||||||+||++++||||+|+||.+++.+..+ .++++||||||||+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~a~D~Yhry~E 86 (497)
T PLN02998 7 SLMFLPLLALALTAVSSLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAHAGHSGVAAGNVACDQYHKYKE 86 (497)
T ss_pred chhHHHHHHhcccccccccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccccCcCCCCCCcccccHHHhhHH
Confidence 3445557888888888877888899999999999999999999999999999999998754222 367889999999999
Q ss_pred HHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHH
Q 017505 85 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKD 164 (370)
Q Consensus 85 Di~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~ 164 (370)
||+|||+||+++|||||+||||+|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.
T Consensus 87 Di~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~ 166 (497)
T PLN02998 87 DVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRD 166 (497)
T ss_pred HHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHH
Confidence 99999999999999999999999999899999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHHHHhCCCceeEEEecCCccccccccccCCCCCCCCCCc--ccCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 017505 165 FTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPPQRCSSI--NHCSRGNSSTEPYITVHHVLLAHASVARLYRK 242 (370)
Q Consensus 165 f~~ya~~v~~~~~d~V~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~--~~~~~~~~~~~~~qa~hnlllAHA~Av~~~re 242 (370)
|++||++|+++|||+|++|+|||||++++..||..|.+|||.+... ..|..+++.+..+|++||+++|||+||+++|+
T Consensus 167 F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~ 246 (497)
T PLN02998 167 FTAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQ 246 (497)
T ss_pred HHHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999964311 01444444566899999999999999999999
Q ss_pred HccCCCCcceEEeeeCCccccCCCcHHHHHHHHHHHhcccccccccccccCCCchhHHhhcCCCCCCCHHHHHHhcCCCc
Q 017505 243 KYQDKQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSAD 322 (370)
Q Consensus 243 ~~~~~~~~kIG~~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~~p~~t~eD~~~ik~~~D 322 (370)
+.+..++++||++++..++||++++|+|++||++++++.++||+||+++|+||+.|++.+++++|.++++|+++|++++|
T Consensus 247 ~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~D 326 (497)
T PLN02998 247 QYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFD 326 (497)
T ss_pred hhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCC
Confidence 76544578999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred EEEEecccCceeecC
Q 017505 323 FLGVINYYIVYVKDN 337 (370)
Q Consensus 323 FiGiNYY~s~~v~~~ 337 (370)
|||||||+|.+|+..
T Consensus 327 FlGiNyYts~~v~~~ 341 (497)
T PLN02998 327 FVGVINYMALYVKDN 341 (497)
T ss_pred EEEEchhcCcccccC
Confidence 999999999999753
No 3
>PLN02849 beta-glucosidase
Probab=100.00 E-value=1.8e-93 Score=732.05 Aligned_cols=335 Identities=64% Similarity=1.139 Sum_probs=302.6
Q ss_pred CchHHHHHHHHHHHHHhhhhccccCCcCCCCCCCeeeeecchhhccCCCCCCCCCCcccccccccCCcCCCCCcCCcccc
Q 017505 1 MMLRLSFLLMYLLNLATSALTAVEYSKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYH 80 (370)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~a~d~y~ 80 (370)
|-+-|||+...||-..++-+.+-.+.+.+||++|+||+|||||||||++++||||+|+||.+++.+. +.++++||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~-~~~~~~a~D~Yh 79 (503)
T PLN02849 1 MELILSLFTIFLLLALSSGKCSSDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRN-MSNGDIACDGYH 79 (503)
T ss_pred CchHHHHHHHHHHHhcccccccCCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCC-CCCCCccccHHH
Confidence 3345666666665555556666678888999999999999999999999999999999999987532 347789999999
Q ss_pred CcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCch
Q 017505 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRT 160 (370)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~ 160 (370)
||+|||+|||+||+++|||||+|+||+|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||.|++
T Consensus 80 rY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~ 159 (503)
T PLN02849 80 KYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRR 159 (503)
T ss_pred hHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCch
Confidence 99999999999999999999999999999889999999999999999999999999999999999999998899999999
Q ss_pred hHHHHHHHHHHHHHHhCCCceeEEEecCCccccccccccCCCCCCCCCC-cccCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 017505 161 IVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPPQRCSS-INHCSRGNSSTEPYITVHHVLLAHASVARL 239 (370)
Q Consensus 161 ~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~-~~~~~~~~~~~~~~qa~hnlllAHA~Av~~ 239 (370)
+++.|++||+.|+++|||+|++|+|||||++++..||..|.+|||.... ...|+.+++.++.++++||+++|||+||++
T Consensus 160 ~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~ 239 (503)
T PLN02849 160 IIKDFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRL 239 (503)
T ss_pred HHHHHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999996431 112433344457899999999999999999
Q ss_pred HHHHccCCCCcceEEeeeCCccccCCCcHHHHHHHHHHHhcccccccccccccCCCchhHHhhcCCCCCCCHHHHHHhcC
Q 017505 240 YRKKYQDKQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKG 319 (370)
Q Consensus 240 ~re~~~~~~~~kIG~~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~~p~~t~eD~~~ik~ 319 (370)
+|++.+..++++||++++..++||.+++|+|+.||++++++.++||+||+++|+||+.|++.++.++|.++++|+++|++
T Consensus 240 ~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~ 319 (503)
T PLN02849 240 YKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKG 319 (503)
T ss_pred HHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcC
Confidence 99975433578999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred CCcEEEEecccCceeec
Q 017505 320 SADFLGVINYYIVYVKD 336 (370)
Q Consensus 320 ~~DFiGiNYY~s~~v~~ 336 (370)
++||||||||++.+|+.
T Consensus 320 ~~DFlGiNyYt~~~v~~ 336 (503)
T PLN02849 320 SSDFIGVIHYLAASVTN 336 (503)
T ss_pred CCCEEEEeccchhhccc
Confidence 99999999999999975
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=3.5e-92 Score=722.68 Aligned_cols=311 Identities=65% Similarity=1.132 Sum_probs=285.6
Q ss_pred CCcCCCCCCCeeeeecchhhccCCCCCCCCCCcccccccccCCcCCCCCcCCccccCcHHHHHHHHhcCCCceeeccccc
Q 017505 25 YSKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWS 104 (370)
Q Consensus 25 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~Ws 104 (370)
+.+.+||++|+||+||||||+||+++++|||+|+||.+++... +.++++||||||||+|||+|||+||+++|||||+||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~~~-~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsWs 101 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHCYN-GGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISWS 101 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeeccC-CCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccHh
Confidence 5667899999999999999999999999999999999886311 347889999999999999999999999999999999
Q ss_pred ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceeEE
Q 017505 105 RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWT 184 (370)
Q Consensus 105 ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~ 184 (370)
||+|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.|+++|||+|++|+
T Consensus 102 RI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~Wi 181 (504)
T PLN02814 102 RLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWT 181 (504)
T ss_pred hcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEE
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred EecCCccccccccccCCCCCCCCCCc--ccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCCCCcceEEeeeCCccc
Q 017505 185 TVNEPNAFANLGYDYGIAPPQRCSSI--NHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLL 262 (370)
Q Consensus 185 t~NEp~~~~~~gy~~g~~~Pg~~~~~--~~~~~~~~~~~~~qa~hnlllAHA~Av~~~re~~~~~~~~kIG~~~~~~~~y 262 (370)
|||||++++..||..|.. ||.+... ..|..+++.++.+|++||+++|||+||+++|++++..++++||++++..++|
T Consensus 182 T~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~ 260 (504)
T PLN02814 182 TINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLS 260 (504)
T ss_pred eccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceee
Confidence 999999999999998874 7754321 1243334445789999999999999999999975445678999999999999
Q ss_pred cCCCcHHHHHHHHHHHhcccccccccccccCCCchhHHhhcCCCCCCCHHHHHHhcCCCcEEEEecccCceeecC
Q 017505 263 PLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFLGVINYYIVYVKDN 337 (370)
Q Consensus 263 P~s~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~~p~~t~eD~~~ik~~~DFiGiNYY~s~~v~~~ 337 (370)
|++++|+|+.||++++++.++||+||+++|+||+.|++.+++++|.++++|+++|++++||||||||+|.+|+..
T Consensus 261 P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~ 335 (504)
T PLN02814 261 PYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNR 335 (504)
T ss_pred cCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccC
Confidence 999999999999999999999999999999999999999998899999999999999999999999999999753
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-91 Score=693.80 Aligned_cols=297 Identities=41% Similarity=0.758 Sum_probs=278.1
Q ss_pred CCCCCCCeeeeecchhhccCCCCCCCCCCccccccccc---CCc--CCCCCcCCccccCcHHHHHHHHhcCCCceeeccc
Q 017505 28 NDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA---GNV--HGTGDIACDGYHKYKEDVKLMADTGLDAYRFSIS 102 (370)
Q Consensus 28 ~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~---~~~--~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~ 102 (370)
.+||++|+||+||||+|+||++++||||+|+||+|++. ++. +..++.||||||||+|||+|||+||+++|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 57999999999999999999999999999999999983 232 5678999999999999999999999999999999
Q ss_pred ccccccCCCC-CCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCce
Q 017505 103 WSRLIPNGRG-PVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVS 181 (370)
Q Consensus 103 Wsri~P~g~g-~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~ 181 (370)
||||+|+|++ .+|++|++||+++||+|+++||+|+|||+|||+|+||+++||||.||+++++|++||++|+++|||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 9999999866 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCccccccccccCCCCCCCCCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCCCCcceEEeeeCCcc
Q 017505 182 YWTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGL 261 (370)
Q Consensus 182 ~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~qa~hnlllAHA~Av~~~re~~~~~~~~kIG~~~~~~~~ 261 (370)
+|+||||||+++..||+.|.+||+... .+.++||+||+++|||+||+++|++.+. .+||||++..+.
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~----------~~~~~qa~hh~~lA~A~avk~~~~~~~~---~kIG~~~~~~p~ 228 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVD----------PKAAYQVAHHMLLAHALAVKAIKKINPK---GKVGIILNLTPA 228 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccC----------HHHHHHHHHHHHHHHHHHHHHHHhhCCc---CceEEEeccCcC
Confidence 999999999999999999999998653 2578999999999999999999998763 289999999999
Q ss_pred ccCCCcHHHHHHHHHHHhcccccccccccccCCCchhHHhhcCC--CCCCCHHHHHHhc-CCCcEEEEecccC-ceeecC
Q 017505 262 LPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQVK-GSADFLGVINYYI-VYVKDN 337 (370)
Q Consensus 262 yP~s~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~--~p~~t~eD~~~ik-~~~DFiGiNYY~s-~~v~~~ 337 (370)
||.|++|+|+.||+.++++.|++|+||+++|+||.++.+.+++. +|+++++|+++|+ +++||||||||++ .+++..
T Consensus 229 YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~ 308 (460)
T COG2723 229 YPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAE 308 (460)
T ss_pred CCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeecc
Confidence 99999999999999999999999999999999999999999876 7999999999998 4799999999994 454443
No 6
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=6.1e-88 Score=687.61 Aligned_cols=294 Identities=33% Similarity=0.597 Sum_probs=271.7
Q ss_pred CCCCCCCeeeeecchhhccCCCCCCCCCCcccccccccCCcCCCCCcCCccccCcHHHHHHHHhcCCCceeecccccccc
Q 017505 28 NDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLI 107 (370)
Q Consensus 28 ~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~ 107 (370)
.+||++|+||+|||||||||+++++|||+|+||.+.+... ..++++||||||||+|||+|||+||+++|||||+||||+
T Consensus 2 ~~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~-~~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~ 80 (467)
T TIGR01233 2 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNY-WYTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIF 80 (467)
T ss_pred CCCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCC-CCCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhhcc
Confidence 4599999999999999999999999999999999876421 236789999999999999999999999999999999999
Q ss_pred cCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceeEEEec
Q 017505 108 PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVN 187 (370)
Q Consensus 108 P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~N 187 (370)
|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||++|+++||+ |++|+|||
T Consensus 81 P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~N 158 (467)
T TIGR01233 81 PTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTFN 158 (467)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEec
Confidence 998899999999999999999999999999999999999999875 9999999999999999999999998 99999999
Q ss_pred CCccccccccccCCCCCCCCCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCCCCcceEEeeeCCccccCC-C
Q 017505 188 EPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLT-N 266 (370)
Q Consensus 188 Ep~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~qa~hnlllAHA~Av~~~re~~~~~~~~kIG~~~~~~~~yP~s-~ 266 (370)
|||+++..||+.|.+|||.+.. .+..+|++||+++|||+||+++|++. ++++||++++..++||++ +
T Consensus 159 EP~~~~~~gy~~G~~~Pg~~~~---------~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~ 226 (467)
T TIGR01233 159 EIGPIGDGQYLVGKFPPGIKYD---------LAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYPYDPE 226 (467)
T ss_pred chhhhhhccchhcccCCCccch---------hHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEECCCC
Confidence 9999999999999999995321 13579999999999999999999974 368999999999999998 8
Q ss_pred cHHHHHHHHHHHhcccccccccccccCCCchhHHhhcC----C--CCCCCHHHHHHh---cCCCcEEEEecccCceeec
Q 017505 267 STEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGS----R--LPAFSDRESKQV---KGSADFLGVINYYIVYVKD 336 (370)
Q Consensus 267 ~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~----~--~p~~t~eD~~~i---k~~~DFiGiNYY~s~~v~~ 336 (370)
+|+|++||++++++.++||+||+++|+||+.|++.++. + .|.++++|+++| ++++||||||||+|.+|+.
T Consensus 227 ~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~ 305 (467)
T TIGR01233 227 NPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQA 305 (467)
T ss_pred CHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeecc
Confidence 99999999999999999999999999999999987753 2 377999999999 4799999999999999975
No 7
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=9.3e-88 Score=687.27 Aligned_cols=295 Identities=35% Similarity=0.630 Sum_probs=272.0
Q ss_pred CCCCCCCeeeeecchhhccCCCCCCCCCCcccccccccCCcCCCCCcCCccccCcHHHHHHHHhcCCCceeecccccccc
Q 017505 28 NDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLI 107 (370)
Q Consensus 28 ~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~ 107 (370)
.+||++|+||+||||||+||++++||||+|+||.+++... ..++++||||||||+|||+|||+||+++|||||+||||+
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~-~~~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~ 81 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENY-WFTPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIF 81 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCC-CCCCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhcC
Confidence 4599999999999999999999999999999999987422 137889999999999999999999999999999999999
Q ss_pred cCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceeEEEec
Q 017505 108 PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVN 187 (370)
Q Consensus 108 P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~N 187 (370)
|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++ |||.|+++++.|++||+.|+++||| |++|+|||
T Consensus 82 P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~N 159 (469)
T PRK13511 82 PDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTFN 159 (469)
T ss_pred cCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEcc
Confidence 998899999999999999999999999999999999999999875 9999999999999999999999999 99999999
Q ss_pred CCccccccccccCCCCCCCCCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCCCCcceEEeeeCCccccCC-C
Q 017505 188 EPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLT-N 266 (370)
Q Consensus 188 Ep~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~qa~hnlllAHA~Av~~~re~~~~~~~~kIG~~~~~~~~yP~s-~ 266 (370)
||++++..||..|.+|||++.. .+..++++||+++|||+||+++|++. ++++||++++..++||.+ +
T Consensus 160 EP~~~~~~gy~~G~~~Pg~~~~---------~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P~~~~ 227 (469)
T PRK13511 160 EIGPIGDGQYLVGKFPPGIKYD---------LAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYPIDPD 227 (469)
T ss_pred chhhhhhcchhhcccCCCCCcc---------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEeeCCCC
Confidence 9999999999999999996421 13579999999999999999999974 468999999999999999 8
Q ss_pred cHHHHHHHHHHHhcccccccccccccCCCchhHHhhc----C--CCCCCCHHHHHHhcC---CCcEEEEecccCceeecC
Q 017505 267 STEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVG----S--RLPAFSDRESKQVKG---SADFLGVINYYIVYVKDN 337 (370)
Q Consensus 267 ~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~----~--~~p~~t~eD~~~ik~---~~DFiGiNYY~s~~v~~~ 337 (370)
+|+|+.||++++++.++||+||+++|+||+.|++.++ + ..+.++++|+++|++ ++||||||||+|.+|+..
T Consensus 228 ~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~ 307 (469)
T PRK13511 228 NPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAY 307 (469)
T ss_pred CHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecC
Confidence 9999999999999999999999999999999998774 2 135899999999964 689999999999999853
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.1e-87 Score=687.09 Aligned_cols=297 Identities=31% Similarity=0.513 Sum_probs=269.3
Q ss_pred cCCCCCCCeeeeecchhhccCCCCCCCCCCccccccccc-CCc--------------C--CCCCcCCccccCcHHHHHHH
Q 017505 27 KNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNV--------------H--GTGDIACDGYHKYKEDVKLM 89 (370)
Q Consensus 27 ~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~-~~~--------------~--~~~~~a~d~y~~~~eDi~l~ 89 (370)
..+||++|+||+|||||||||++++||||+|+||.|++. +++ + .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 467999999999999999999999999999999998863 221 0 14688999999999999999
Q ss_pred HhcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHH
Q 017505 90 ADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAY 168 (370)
Q Consensus 90 ~~lG~~~~R~si~Wsri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~y 168 (370)
|+||+++|||||+||||+|+| .|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++|
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 999999999999999999998 4569999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHhCCCceeEEEecCCccccccccc-cCC-CCCCCCCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccC
Q 017505 169 ADVCFRQFGDRVSYWTTVNEPNAFANLGYD-YGI-APPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQD 246 (370)
Q Consensus 169 a~~v~~~~~d~V~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~qa~hnlllAHA~Av~~~re~~~~ 246 (370)
|+.|+++|||+|++|+|||||++++..||. .|. +|||.. +.++.++++||+++|||+||+++|+..
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~----------~~~~~~~a~h~~llAHa~A~~~~~~~~-- 230 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGEN----------KEQVKYQAAHHELVASAIATKIAHEVD-- 230 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCc----------hhhhHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 999999999999999999999999888886 343 366632 124579999999999999999999864
Q ss_pred CCCcceEEeeeCCccccCCCcHHHHHHHHHHHhcccccccccccccCCCchhHHhhcCC--CCCCCHHHHHHhc-CCCcE
Q 017505 247 KQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQVK-GSADF 323 (370)
Q Consensus 247 ~~~~kIG~~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~--~p~~t~eD~~~ik-~~~DF 323 (370)
++++||++++..++||.+++|+|+.||++++. .++||+||+++|+||+.|++.++++ .|.|+++|+++|+ +++||
T Consensus 231 -~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~~-~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DF 308 (478)
T PRK09593 231 -PENKVGCMLAAGQYYPNTCHPEDVWAAMKEDR-ENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDF 308 (478)
T ss_pred -CCCeEEEEEeCCeeEeCCCCHHHHHHHHHHHH-HhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 46899999999999999999999999999884 5889999999999999999999753 6889999999996 89999
Q ss_pred EEEecccCceeecC
Q 017505 324 LGVINYYIVYVKDN 337 (370)
Q Consensus 324 iGiNYY~s~~v~~~ 337 (370)
||||||+|.+|+..
T Consensus 309 lGiNyYt~~~v~~~ 322 (478)
T PRK09593 309 ISFSYYSSRVASGD 322 (478)
T ss_pred EEEecccCcccccC
Confidence 99999999999853
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=7e-87 Score=680.83 Aligned_cols=294 Identities=33% Similarity=0.577 Sum_probs=264.1
Q ss_pred CCCCCCeeeeecchhhccCCCCCCCCCCccccccc---cc--CCc------CC--CCCcCCccccCcHHHHHHHHhcCCC
Q 017505 29 DFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFA---HA--GNV------HG--TGDIACDGYHKYKEDVKLMADTGLD 95 (370)
Q Consensus 29 ~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~---~~--~~~------~~--~~~~a~d~y~~~~eDi~l~~~lG~~ 95 (370)
+||++|+||+|||||||||++++||||+|+||.++ +. +++ +. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999988 31 211 11 4688999999999999999999999
Q ss_pred ceeecccccccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHH
Q 017505 96 AYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFR 174 (370)
Q Consensus 96 ~~R~si~Wsri~P~g~-g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~ 174 (370)
+|||||+||||+|+|. |.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||++|++
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 9999999999999984 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCceeEEEecCCcccccc-----ccc-cCC-CCCCCCCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCC
Q 017505 175 QFGDRVSYWTTVNEPNAFANL-----GYD-YGI-APPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDK 247 (370)
Q Consensus 175 ~~~d~V~~w~t~NEp~~~~~~-----gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~qa~hnlllAHA~Av~~~re~~~~~ 247 (370)
+|||+|++|+|||||++++.. ||. .|. +|||.. .....+|++||+++|||+||+++|++.+
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~----------~~~~~~~~~h~~llAha~A~~~~~~~~~-- 230 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED----------REQIMYQAAHYELVASALAVKTGHEINP-- 230 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc----------hhHHHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 999999999999999998766 444 333 255531 1234799999999999999999999754
Q ss_pred CCcceEEeeeCCccccCCCcHHHHHHHHHHHhcccccccccccccCCCchhHHhhcCC--CCCCCHHHHHHh-cCCCcEE
Q 017505 248 QRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQV-KGSADFL 324 (370)
Q Consensus 248 ~~~kIG~~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~--~p~~t~eD~~~i-k~~~DFi 324 (370)
+++||++++..++||.+++|+|+.||++++.+ +.||+||+++|+||+.|++.++++ .|.++++|+++| ++++|||
T Consensus 231 -~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFl 308 (476)
T PRK09589 231 -DFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDYI 308 (476)
T ss_pred -CCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEE
Confidence 57999999999999999999999999998855 679999999999999999999864 488999999999 5899999
Q ss_pred EEecccCceeec
Q 017505 325 GVINYYIVYVKD 336 (370)
Q Consensus 325 GiNYY~s~~v~~ 336 (370)
|||||+|.+|+.
T Consensus 309 GiNyYts~~v~~ 320 (476)
T PRK09589 309 GFSYYMSFATKF 320 (476)
T ss_pred EEecccCccccc
Confidence 999999999975
No 10
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=8.4e-88 Score=686.67 Aligned_cols=298 Identities=53% Similarity=0.978 Sum_probs=271.8
Q ss_pred cCCCCCCCeeeeecchhhccCCCCCCCCCCccccccccc-CCc--CCCCCcCCccccCcHHHHHHHHhcCCCceeecccc
Q 017505 27 KNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNV--HGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISW 103 (370)
Q Consensus 27 ~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~-~~~--~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W 103 (370)
+.+||++|+||+|||||||||++++||||+|+||.|++. ++. +.++++||||||||+|||+|||+||+++|||||+|
T Consensus 2 ~~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W 81 (455)
T PF00232_consen 2 SKKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISW 81 (455)
T ss_dssp GGGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--H
T ss_pred CCCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecch
Confidence 357999999999999999999999999999999999987 443 56789999999999999999999999999999999
Q ss_pred cccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCcee
Q 017505 104 SRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSY 182 (370)
Q Consensus 104 sri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~ 182 (370)
+||+|+| +|.+|++++++|+++|++|+++||+|+|||+|||+|+||++ +|||+|+++++.|++||++|+++|||+|++
T Consensus 82 ~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~ 160 (455)
T PF00232_consen 82 SRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKY 160 (455)
T ss_dssp HHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSE
T ss_pred hheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcce
Confidence 9999998 89999999999999999999999999999999999999987 799999999999999999999999999999
Q ss_pred EEEecCCccccccccccCCCCCCCCCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCCCCcceEEeeeCCccc
Q 017505 183 WTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLL 262 (370)
Q Consensus 183 w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~qa~hnlllAHA~Av~~~re~~~~~~~~kIG~~~~~~~~y 262 (370)
|+|||||++++..||+.|.+|||..+ .++.++++||+++|||+||+++|++.+ +++||++++..+++
T Consensus 161 w~T~NEp~~~~~~~y~~g~~~p~~~~----------~~~~~~~~h~~l~AHa~A~~~~~~~~~---~~~IGi~~~~~~~~ 227 (455)
T PF00232_consen 161 WITFNEPNVFALLGYLYGGFPPGRDS----------LKAFYQAAHNLLLAHAKAVKAIKEKYP---DGKIGIALNFSPFY 227 (455)
T ss_dssp EEEEETHHHHHHHHHTSSSSTTCSST----------HHHHHHHHHHHHHHHHHHHHHHHHHTC---TSEEEEEEEEEEEE
T ss_pred EEeccccceeeccccccccccccccc----------cchhhHHHhhHHHHHHHHHHHHhhccc---ceEEeccccccccC
Confidence 99999999999999999999999543 357899999999999999999999874 68999999999999
Q ss_pred cCCCcHHHH-HHHHHHHhcccccccccccccCCCchhHHhhcCC--CCCCCHHHHHHhcCCCcEEEEecccCceeecCC
Q 017505 263 PLTNSTEDA-IATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQVKGSADFLGVINYYIVYVKDNP 338 (370)
Q Consensus 263 P~s~~p~D~-~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~--~p~~t~eD~~~ik~~~DFiGiNYY~s~~v~~~~ 338 (370)
|.+++++|. .||++.+++.|+||+||+++|+||..|+.+++++ +|.||++|++.|++++||||||||++.+|+..+
T Consensus 228 P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~ 306 (455)
T PF00232_consen 228 PLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADP 306 (455)
T ss_dssp ESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESS
T ss_pred CCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCc
Confidence 999988777 8999999999999999999999999999999987 999999999999999999999999999999775
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=4.4e-86 Score=674.63 Aligned_cols=298 Identities=31% Similarity=0.582 Sum_probs=266.6
Q ss_pred CcCCCCCCCeeeeecchhhccCCCCCCCCCCccccccc---cc--CCc------C--CCCCcCCccccCcHHHHHHHHhc
Q 017505 26 SKNDFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFA---HA--GNV------H--GTGDIACDGYHKYKEDVKLMADT 92 (370)
Q Consensus 26 ~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~---~~--~~~------~--~~~~~a~d~y~~~~eDi~l~~~l 92 (370)
.+.+||++|+||+||||||+||++++||||+|+||.++ +. +++ + .++++||||||||+|||+|||+|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 35679999999999999999999999999999999988 31 111 1 25678999999999999999999
Q ss_pred CCCceeecccccccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHHH
Q 017505 93 GLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADV 171 (370)
Q Consensus 93 G~~~~R~si~Wsri~P~g~-g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~ 171 (370)
|+++|||||+|+||+|+|. |.+|++|+++|+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||++
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 9999999999999999984 568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCceeEEEecCCccc-----ccccccc-CCC-CCCCCCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHc
Q 017505 172 CFRQFGDRVSYWTTVNEPNAF-----ANLGYDY-GIA-PPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKY 244 (370)
Q Consensus 172 v~~~~~d~V~~w~t~NEp~~~-----~~~gy~~-g~~-~Pg~~~~~~~~~~~~~~~~~~qa~hnlllAHA~Av~~~re~~ 244 (370)
|+++|||+|++|+||||||++ +..||.. |.+ ||+.. ..+..+|++||+++|||+||+++|++.
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~----------~~~~~~~~~h~~llAHa~A~~~~~~~~ 231 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN----------PEETMYQVLHHQFVASALAVKAARRIN 231 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc----------hhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987 6678874 654 44321 124579999999999999999999975
Q ss_pred cCCCCcceEEeeeCCccccCCCcHHHHHHHHHHHhcccccccccccccCCCchhHHhhcCC--CCCCCHHHHHHh-cCCC
Q 017505 245 QDKQRGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQV-KGSA 321 (370)
Q Consensus 245 ~~~~~~kIG~~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~--~p~~t~eD~~~i-k~~~ 321 (370)
+ +++||++++..++||.+++|+|++||++++. .+.+|+||+++|+||+.|++.++++ .|.++++|+++| ++++
T Consensus 232 ~---~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~~ 307 (477)
T PRK15014 232 P---EMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTC 307 (477)
T ss_pred C---CCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCCC
Confidence 4 5899999999999999999999999998773 2345999999999999999999876 378999999999 5899
Q ss_pred cEEEEecccCceeecC
Q 017505 322 DFLGVINYYIVYVKDN 337 (370)
Q Consensus 322 DFiGiNYY~s~~v~~~ 337 (370)
||||||||+|.+|+..
T Consensus 308 DFlGiNyYt~~~v~~~ 323 (477)
T PRK15014 308 DYLGFSYYMTNAVKAE 323 (477)
T ss_pred CEEEEcceeCeeeccC
Confidence 9999999999999753
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=3.3e-85 Score=667.27 Aligned_cols=294 Identities=31% Similarity=0.523 Sum_probs=269.4
Q ss_pred CCCCCCeeeeecchhhccCCCCCCCCCCccccccccc-CCc--------------C--CCCCcCCccccCcHHHHHHHHh
Q 017505 29 DFPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNV--------------H--GTGDIACDGYHKYKEDVKLMAD 91 (370)
Q Consensus 29 ~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~-~~~--------------~--~~~~~a~d~y~~~~eDi~l~~~ 91 (370)
+||++|+||+||||||+||++++||||+|+||++++. +++ + .++++||||||||+|||++|++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 5999999999999999999999999999999998873 221 0 1467899999999999999999
Q ss_pred cCCCceeecccccccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHH
Q 017505 92 TGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYAD 170 (370)
Q Consensus 92 lG~~~~R~si~Wsri~P~g~-g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~ 170 (370)
||+++|||||+|+||+|+|. +.+|++++++|+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999984 56899999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHhCCCceeEEEecCCccccccccc-cCC-CCCCCCCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCCC
Q 017505 171 VCFRQFGDRVSYWTTVNEPNAFANLGYD-YGI-APPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQ 248 (370)
Q Consensus 171 ~v~~~~~d~V~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~qa~hnlllAHA~Av~~~re~~~~~~ 248 (370)
+|+++|||+|++|+||||||+++..||. .|. +|||... .+..+|++||+++|||+||+++|++.+
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~~~--- 229 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ----------DQVKYQAAHHELVASALATKIAHEVNP--- 229 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc----------hHhHHHHHHHHHHHHHHHHHHHHHhCC---
Confidence 9999999999999999999999999996 564 4787421 235799999999999999999999754
Q ss_pred CcceEEeeeCCccccCCCcHHHHHHHHHHHhcccccccccccccCCCchhHHhhcCC--CCCCCHHHHHHhcCCCcEEEE
Q 017505 249 RGYIGVNIFAFGLLPLTNSTEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSR--LPAFSDRESKQVKGSADFLGV 326 (370)
Q Consensus 249 ~~kIG~~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~--~p~~t~eD~~~ik~~~DFiGi 326 (370)
+++||++++..++||++++|+|++||++++ +.++||+||+++|+||+.|++.++++ +|.++++|+++|++++|||||
T Consensus 230 ~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGi 308 (474)
T PRK09852 230 QNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSF 308 (474)
T ss_pred CCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEE
Confidence 579999999999999999999999999877 45889999999999999999999764 789999999999999999999
Q ss_pred ecccCceeec
Q 017505 327 INYYIVYVKD 336 (370)
Q Consensus 327 NYY~s~~v~~ 336 (370)
|||+|.+|+.
T Consensus 309 NyYt~~~v~~ 318 (474)
T PRK09852 309 SYYASRCASA 318 (474)
T ss_pred ccccCeeccc
Confidence 9999999975
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=4.6e-84 Score=653.46 Aligned_cols=293 Identities=45% Similarity=0.844 Sum_probs=275.2
Q ss_pred CCCCCeeeeecchhhccCCCCCCCCCCccccccccc-CCc--CCCCCcCCccccCcHHHHHHHHhcCCCceeeccccccc
Q 017505 30 FPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHA-GNV--HGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRL 106 (370)
Q Consensus 30 fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~-~~~--~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~Wsri 106 (370)
||++|+||+||||||+||+++++|||+|+||.+++. ++. +.++++||||||+|+|||++|++||+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 899999999999999999999999999999999874 333 34778899999999999999999999999999999999
Q ss_pred ccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceeEEEe
Q 017505 107 IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTV 186 (370)
Q Consensus 107 ~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~ 186 (370)
+|+|+|.+|++++++|+++|++|+++||+|+|||+|||+|+||+++ |||.++++++.|++||+.|+++|||+|++|+||
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9998899999999999999999999999999999999999999987 999999999999999999999999999999999
Q ss_pred cCCccccccccccCCCCCCCCCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCCCCcceEEeeeCCccccCCC
Q 017505 187 NEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLTN 266 (370)
Q Consensus 187 NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~qa~hnlllAHA~Av~~~re~~~~~~~~kIG~~~~~~~~yP~s~ 266 (370)
|||++++..||..|.+||+.++ .+..++++||+++|||+||+++|++.| +++||++++..++||.++
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~----------~~~~~~~~hnll~Aha~A~~~~~~~~~---~~~IGi~~~~~~~~P~~~ 226 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRD----------LRAALQAAHHLLLAHGLAVQALRANGP---GAQVGIVLNLTPVYPASD 226 (427)
T ss_pred cCcceecccchhhccCCCCCcc----------HHHHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEEEEeCCeeeeCCC
Confidence 9999999999999988998432 134789999999999999999999764 689999999999999999
Q ss_pred cHHHHHHHHHHHhcccccccccccccCCCchhHHhhcCCCCCCCHHHHHHhcCCCcEEEEecccCceeecC
Q 017505 267 STEDAIATQRYYDFLIGWMANPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFLGVINYYIVYVKDN 337 (370)
Q Consensus 267 ~p~D~~Aa~~~~~~~~~~flD~~~~G~YP~~~~~~l~~~~p~~t~eD~~~ik~~~DFiGiNYY~s~~v~~~ 337 (370)
+|+|+.||++++++.++||+||+++|+||+.|++.++. +|.++++|+++|++++||||||||++.+|+..
T Consensus 227 ~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~-~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~ 296 (427)
T TIGR03356 227 SPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLGD-APFVQDGDLETIAQPLDFLGINYYTRSVVAAD 296 (427)
T ss_pred CHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhcc-CCCCCHHHHHHhcCCCCEEEEeccccceeccC
Confidence 99999999999999999999999999999999999974 69999999999999999999999999999853
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.40 E-value=6.2e-13 Score=132.88 Aligned_cols=108 Identities=24% Similarity=0.447 Sum_probs=87.6
Q ss_pred cCcHHHHHHHHhcCCCceee-cccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhh-----
Q 017505 80 HKYKEDVKLMADTGLDAYRF-SISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEY----- 153 (370)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~-si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~----- 153 (370)
+.+++|+++|+++|+|++|+ .++|++|||+ +|++| ++.+|++|+.+.++||++++.+.+...|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~-eG~yd---F~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~ 85 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPE-EGQYD---FSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILP 85 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SB-TTB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCC-CCeee---cHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccc
Confidence 46899999999999999997 5799999999 89999 77899999999999999999999999999998654
Q ss_pred ----------CC-----CCCchhHHHHHHHHHHHHHHhCCC--ceeEEEecCCcc
Q 017505 154 ----------GG-----WINRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPNA 191 (370)
Q Consensus 154 ----------gg-----w~~~~~~~~f~~ya~~v~~~~~d~--V~~w~t~NEp~~ 191 (370)
|+ ..++...+.+.++++.+++||++. |..|.+.|||..
T Consensus 86 ~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 86 VDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred cCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 11 124556778888889999999974 889999999986
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.32 E-value=5.5e-12 Score=119.43 Aligned_cols=109 Identities=22% Similarity=0.358 Sum_probs=90.6
Q ss_pred CcHHHHHHHHhcCCCceeecccccccc-cCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCC-CC
Q 017505 81 KYKEDVKLMADTGLDAYRFSISWSRLI-PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGW-IN 158 (370)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~Wsri~-P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw-~~ 158 (370)
..++|++.|+++|+|++|+.|.|..++ |..++.++...++.++++|+.|.++||.+++++|+. |.|.... +++ ..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~~ 98 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGNN 98 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTTH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccccc
Confidence 678999999999999999999998888 553456899999999999999999999999999974 7774322 233 33
Q ss_pred chhHHHHHHHHHHHHHHhCC--CceeEEEecCCccc
Q 017505 159 RTIVKDFTAYADVCFRQFGD--RVSYWTTVNEPNAF 192 (370)
Q Consensus 159 ~~~~~~f~~ya~~v~~~~~d--~V~~w~t~NEp~~~ 192 (370)
....+.|.++++.++++|++ .|..|.++|||+..
T Consensus 99 ~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred hhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 44678899999999999954 68899999999964
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.84 E-value=1e-08 Score=97.41 Aligned_cols=82 Identities=20% Similarity=0.355 Sum_probs=71.6
Q ss_pred cccccccCCCCCCChhhhHHHHHHHHHHHHcCCee--EEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCC
Q 017505 102 SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQP--HVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDR 179 (370)
Q Consensus 102 ~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p--~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~ 179 (370)
.|++|+|+ +|.+| ++..|++++.|+++||++ .+.+.|...|.|+... ..++..+.+.+|++.+++||+++
T Consensus 2 kW~~~ep~-~G~~n---~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~----~~~~~~~~~~~~i~~v~~ry~g~ 73 (254)
T smart00633 2 KWDSTEPS-RGQFN---FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL----SKETLLARLENHIKTVVGRYKGK 73 (254)
T ss_pred CcccccCC-CCccC---hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC----CHHHHHHHHHHHHHHHHHHhCCc
Confidence 69999999 89999 677889999999999995 4456777899998642 25567899999999999999999
Q ss_pred ceeEEEecCCcc
Q 017505 180 VSYWTTVNEPNA 191 (370)
Q Consensus 180 V~~w~t~NEp~~ 191 (370)
|..|.++|||..
T Consensus 74 i~~wdV~NE~~~ 85 (254)
T smart00633 74 IYAWDVVNEALH 85 (254)
T ss_pred ceEEEEeeeccc
Confidence 999999999986
No 17
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=3e-08 Score=105.00 Aligned_cols=114 Identities=20% Similarity=0.371 Sum_probs=91.9
Q ss_pred CcHHHHHHHHhcCCCceeec-ccccccccCCCCCCChhhhHHHHHH-HHHHHHcCCeeEEec-cCCCCcHhHHhhh----
Q 017505 81 KYKEDVKLMADTGLDAYRFS-ISWSRLIPNGRGPVNPKGLQYYNNL-INELISYGIQPHVTL-HHFDLPQALEDEY---- 153 (370)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~s-i~Wsri~P~g~g~~n~~~~~~y~~~-i~~l~~~Gi~p~vtL-~H~~~P~wl~~~~---- 153 (370)
.+++|+++||++|+|++|++ ++|++++|+ .|.+| +.+.|.. ++.+.+.||..++.. .....|.|+.++|
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~-eG~fd---f~~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL 106 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPE-EGKFD---FTWLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEIL 106 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCcc-ccccC---cccchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhhe
Confidence 47889999999999999995 699999999 89999 4577888 999999999999999 7788999998765
Q ss_pred -----------CCCCCchhH-HHHHHHHHH----HHHH-hCC--CceeEEEecCCcc-ccccccc
Q 017505 154 -----------GGWINRTIV-KDFTAYADV----CFRQ-FGD--RVSYWTTVNEPNA-FANLGYD 198 (370)
Q Consensus 154 -----------ggw~~~~~~-~~f~~ya~~----v~~~-~~d--~V~~w~t~NEp~~-~~~~gy~ 198 (370)
|+|.+-+.. ..|.+|++. +.+| |++ -|-.|.+-||-.. .++..|.
T Consensus 107 ~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~ 171 (673)
T COG1874 107 AVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYC 171 (673)
T ss_pred EecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCcccccccc
Confidence 566544433 247777766 7888 776 4899999999876 4444443
No 18
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=8.1e-06 Score=82.83 Aligned_cols=109 Identities=20% Similarity=0.268 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCCceeecccccccccCC---CCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhh--h-CCC
Q 017505 83 KEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDE--Y-GGW 156 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~Wsri~P~g---~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~--~-ggw 156 (370)
++|+..||+.|+|++|+.|.|-.+.+.+ +...+...+...+++|+.++++||.+++.||+..-+.--.+. + +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999855555542 223324445699999999999999999999986522111111 0 112
Q ss_pred C-CchhHHHHHHHHHHHHHHhCC--CceeEEEecCCcc
Q 017505 157 I-NRTIVKDFTAYADVCFRQFGD--RVSYWTTVNEPNA 191 (370)
Q Consensus 157 ~-~~~~~~~f~~ya~~v~~~~~d--~V~~w~t~NEp~~ 191 (370)
. ..+.++++.+-.+.++.||++ .|--..++|||+.
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 345779999999999999997 3555679999995
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.14 E-value=7.9e-06 Score=84.72 Aligned_cols=106 Identities=25% Similarity=0.452 Sum_probs=65.0
Q ss_pred cHHHHHHHH-hcCCCceeec--c--ccccccc-CCCCC--CChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhh-
Q 017505 82 YKEDVKLMA-DTGLDAYRFS--I--SWSRLIP-NGRGP--VNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDE- 152 (370)
Q Consensus 82 ~~eDi~l~~-~lG~~~~R~s--i--~Wsri~P-~g~g~--~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~- 152 (370)
+++.+..++ ++|++.+||- + +..-..+ +++|. +| +...|+++|.++++||+|+|.|.. +|.++...
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~~ 115 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGF--MPMALASGY 115 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS-
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEe--chhhhcCCC
Confidence 566666664 9999999986 3 2222222 22332 67 888999999999999999999975 78776432
Q ss_pred -----hCCCC-CchhHHHHHHHHHHHHHHhCC-----Cce--eEEEecCCccc
Q 017505 153 -----YGGWI-NRTIVKDFTAYADVCFRQFGD-----RVS--YWTTVNEPNAF 192 (370)
Q Consensus 153 -----~ggw~-~~~~~~~f~~ya~~v~~~~~d-----~V~--~w~t~NEp~~~ 192 (370)
+.|+. .|+..+.|.++++.+++|+.+ .|. +|.+||||++.
T Consensus 116 ~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~ 168 (486)
T PF01229_consen 116 QTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK 168 (486)
T ss_dssp -EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST
T ss_pred CccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc
Confidence 12222 356778888888777666543 455 45899999973
No 20
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.03 E-value=0.00013 Score=71.97 Aligned_cols=102 Identities=20% Similarity=0.348 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccC---CCCcHhHHhhhCCCCC-
Q 017505 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH---FDLPQALEDEYGGWIN- 158 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H---~~~P~wl~~~~ggw~~- 158 (370)
++=+++||+.|+|++|+-+ | +.|...|..| ++.-.++..+++++||+.++++|- |.=|..- ..-..|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q-~~P~aW~~~ 99 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQ-NKPAAWANL 99 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB--B--TTCTSS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCC-CCCccCCCC
Confidence 4567999999999999988 4 4566226666 777889999999999999999984 2233221 11257887
Q ss_pred --chhHHHHHHHHHHHHHHhCC---CceeEEEecCCcc
Q 017505 159 --RTIVKDFTAYADVCFRQFGD---RVSYWTTVNEPNA 191 (370)
Q Consensus 159 --~~~~~~f~~ya~~v~~~~~d---~V~~w~t~NEp~~ 191 (370)
.+..+...+|.+.+.+.+++ .++++++=||.+.
T Consensus 100 ~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~ 137 (332)
T PF07745_consen 100 SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINN 137 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccc
Confidence 56778899999998888765 5788899999985
No 21
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.00 E-value=3.2e-05 Score=76.08 Aligned_cols=123 Identities=17% Similarity=0.289 Sum_probs=87.5
Q ss_pred CCCCCeeeeecchhhccCCCCCCCCCCcccccccccCCcCCCCCcCCccccCcHHHHHHHHhcCCCceee--cccccccc
Q 017505 30 FPPGFLFGASTSAYQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRF--SISWSRLI 107 (370)
Q Consensus 30 fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~--si~Wsri~ 107 (370)
.+.+|.+|+|.++.++++.. .| +.+-.--++.+-. ..-|..++
T Consensus 6 ~~~~f~~G~av~~~~~~~~~-------------------------------~~----~~~~~~~Fn~~t~eN~~Kw~~~e 50 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP-------------------------------RY----RELFAKHFNSVTPENEMKWGSIE 50 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH-------------------------------HH----HHHHHHH-SEEEESSTTSHHHHE
T ss_pred HhccCCEEEEechhHcCCcH-------------------------------HH----HHHHHHhCCeeeeccccchhhhc
Confidence 45789999999999988631 01 1111223444444 47899999
Q ss_pred cCCCCCCChhhhHHHHHHHHHHHHcCCeeE--EeccCCCCcHhHHhhhCCCCCch---hHHHHHHHHHHHHHHhC--CCc
Q 017505 108 PNGRGPVNPKGLQYYNNLINELISYGIQPH--VTLHHFDLPQALEDEYGGWINRT---IVKDFTAYADVCFRQFG--DRV 180 (370)
Q Consensus 108 P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~--vtL~H~~~P~wl~~~~ggw~~~~---~~~~f~~ya~~v~~~~~--d~V 180 (370)
|. +|.+| ++..|++++-|+++||++- ..+.|--.|.|+... .-+...+ ..+...+|.+.+++||+ ++|
T Consensus 51 ~~-~g~~~---~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i 125 (320)
T PF00331_consen 51 PE-PGRFN---FESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDKGRI 125 (320)
T ss_dssp SB-TTBEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTE
T ss_pred CC-CCccC---ccchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhccccce
Confidence 99 89999 6678999999999999987 334455789999753 1233333 78899999999999999 589
Q ss_pred eeEEEecCCccc
Q 017505 181 SYWTTVNEPNAF 192 (370)
Q Consensus 181 ~~w~t~NEp~~~ 192 (370)
..|=+.|||-.-
T Consensus 126 ~~WDVvNE~i~~ 137 (320)
T PF00331_consen 126 YAWDVVNEAIDD 137 (320)
T ss_dssp SEEEEEES-B-T
T ss_pred EEEEEeeecccC
Confidence 999999999753
No 22
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.69 E-value=0.00014 Score=71.48 Aligned_cols=110 Identities=12% Similarity=0.153 Sum_probs=74.0
Q ss_pred cCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEecc--------CCCCcHhHHh
Q 017505 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--------HFDLPQALED 151 (370)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~--------H~~~P~wl~~ 151 (370)
..|++-++.||++|+|++-+-+.|.--||. +|++|.++..=.+++|+.|+++||.+++-.- ..++|.||..
T Consensus 24 ~~W~~~l~k~ka~G~n~v~~yv~W~~he~~-~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~ 102 (319)
T PF01301_consen 24 EYWRDRLQKMKAAGLNTVSTYVPWNLHEPE-EGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLR 102 (319)
T ss_dssp GGHHHHHHHHHHTT-SEEEEE--HHHHSSB-TTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGG
T ss_pred hHHHHHHHHHHhCCcceEEEeccccccCCC-CCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhc
Confidence 457888999999999999999999999999 8999999988899999999999999776532 1359999986
Q ss_pred hhCCC---CCchhHHHHHHHHHHHHHHhCC-------CceeEEEecCCc
Q 017505 152 EYGGW---INRTIVKDFTAYADVCFRQFGD-------RVSYWTTVNEPN 190 (370)
Q Consensus 152 ~~ggw---~~~~~~~~f~~ya~~v~~~~~d-------~V~~w~t~NEp~ 190 (370)
+.+.. .++...+...+|.+.+++...+ -|...++=||..
T Consensus 103 ~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 103 KPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp STTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 53332 2344566666666666666654 244556666644
No 23
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.0062 Score=58.74 Aligned_cols=136 Identities=18% Similarity=0.358 Sum_probs=84.8
Q ss_pred CCCCCCCeeeeecch-hhccCCCCCCCCCCcccccccccCCcCCCCCcCCccccCcHHHHHHHHhcCCCceeeccccccc
Q 017505 28 NDFPPGFLFGASTSA-YQVEGAANEDGRTPSIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRL 106 (370)
Q Consensus 28 ~~fp~~FlwG~atsa-~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~Wsri 106 (370)
-..|++|+.|+-.|. .|+|-. ++| |... ++ .-++-++.+|+.|+|.+|+-| |-.=
T Consensus 33 ~~~~~dFikGaDis~l~~lE~~---Gvk-------f~d~-----ng--------~~qD~~~iLK~~GvNyvRlRv-wndP 88 (403)
T COG3867 33 ENSPNDFIKGADISSLIELENS---GVK-------FFDT-----NG--------VRQDALQILKNHGVNYVRLRV-WNDP 88 (403)
T ss_pred cCChHHhhccccHHHHHHHHHc---Cce-------EEcc-----CC--------hHHHHHHHHHHcCcCeEEEEE-ecCC
Confidence 347899999997654 567732 112 1111 11 114457999999999999976 3221
Q ss_pred ccC-C----CCCCChhhhHHHHHHHHHHHHcCCeeEEecc---CCCCcHhHHhhhCCCCCc---hhHHHHHHHHHHHHHH
Q 017505 107 IPN-G----RGPVNPKGLQYYNNLINELISYGIQPHVTLH---HFDLPQALEDEYGGWINR---TIVKDFTAYADVCFRQ 175 (370)
Q Consensus 107 ~P~-g----~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~---H~~~P~wl~~~~ggw~~~---~~~~~f~~ya~~v~~~ 175 (370)
..+ | -|.-| ++.--++-.++++.||++++..| ||.=|..- ++-..|.+- ..-.+.-+|.+.+..+
T Consensus 89 ~dsngn~yggGnnD---~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ-~kPkaW~~l~fe~lk~avy~yTk~~l~~ 164 (403)
T COG3867 89 YDSNGNGYGGGNND---LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ-KKPKAWENLNFEQLKKAVYSYTKYVLTT 164 (403)
T ss_pred ccCCCCccCCCcch---HHHHHHHHHHHHhcCcEEEeeccchhhccChhhc-CCcHHhhhcCHHHHHHHHHHHHHHHHHH
Confidence 111 1 12334 55566777899999999999987 45556542 232457653 3345566677777776
Q ss_pred hCC---CceeEEEecCCcc
Q 017505 176 FGD---RVSYWTTVNEPNA 191 (370)
Q Consensus 176 ~~d---~V~~w~t~NEp~~ 191 (370)
+.+ .....++=||-|-
T Consensus 165 m~~eGi~pdmVQVGNEtn~ 183 (403)
T COG3867 165 MKKEGILPDMVQVGNETNG 183 (403)
T ss_pred HHHcCCCccceEeccccCC
Confidence 664 4566678999873
No 24
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.50 E-value=0.0002 Score=71.83 Aligned_cols=99 Identities=14% Similarity=0.327 Sum_probs=76.1
Q ss_pred ccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEecc-C-----------CCCc
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------FDLP 146 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H-----------~~~P 146 (370)
++..+..++.+|++|++.+-+.+=|.-+|+.+++++| |+-|+++++.+++.|++..+.|. | ..+|
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 4478899999999999999999999999999999999 66699999999999999888763 2 4689
Q ss_pred HhHHhhh-----------CC--------CCCchhHHHHHHHHHHHHHHhCCCc
Q 017505 147 QALEDEY-----------GG--------WINRTIVKDFTAYADVCFRQFGDRV 180 (370)
Q Consensus 147 ~wl~~~~-----------gg--------w~~~~~~~~f~~ya~~v~~~~~d~V 180 (370)
.|+.++. |. |....+++.|.+|-+...++|.+..
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~ 144 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL 144 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9987531 22 3333448999999998888887654
No 25
>PLN02803 beta-amylase
Probab=97.37 E-value=0.00061 Score=70.11 Aligned_cols=98 Identities=18% Similarity=0.344 Sum_probs=77.8
Q ss_pred cCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEecc-C-----------CCCcH
Q 017505 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------FDLPQ 147 (370)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H-----------~~~P~ 147 (370)
...+..++.+|++|++.+-+.+=|--+|+++++++| |.-|+++++.+++.|++..+.|. | ..+|.
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 183 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYN---WEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPP 183 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 447779999999999999999999999999999999 66699999999999999887775 3 35999
Q ss_pred hHHhhh-----------CCC----------------CCchhHHHHHHHHHHHHHHhCCCc
Q 017505 148 ALEDEY-----------GGW----------------INRTIVKDFTAYADVCFRQFGDRV 180 (370)
Q Consensus 148 wl~~~~-----------ggw----------------~~~~~~~~f~~ya~~v~~~~~d~V 180 (370)
|+.+.. .|- ..+.-++.|.+|-+-+-+.|.+..
T Consensus 184 WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 243 (548)
T PLN02803 184 WVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYL 243 (548)
T ss_pred HHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHh
Confidence 987521 121 223345778888888777777654
No 26
>PLN00197 beta-amylase; Provisional
Probab=97.36 E-value=0.00066 Score=70.11 Aligned_cols=99 Identities=18% Similarity=0.329 Sum_probs=78.6
Q ss_pred cCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEecc-C-----------CCCcH
Q 017505 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------FDLPQ 147 (370)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H-----------~~~P~ 147 (370)
...+..++.+|.+|++.+-+.+=|--+|+++++++| |.-|+++++.+++.|++..+.|. | ..+|.
T Consensus 127 ~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~Yd---WsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~ 203 (573)
T PLN00197 127 KAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYN---WGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPK 203 (573)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 347889999999999999999999999999999999 56699999999999999888775 3 36999
Q ss_pred hHHhhh-----------CCCC----------------CchhHHHHHHHHHHHHHHhCCCce
Q 017505 148 ALEDEY-----------GGWI----------------NRTIVKDFTAYADVCFRQFGDRVS 181 (370)
Q Consensus 148 wl~~~~-----------ggw~----------------~~~~~~~f~~ya~~v~~~~~d~V~ 181 (370)
|+.+.. .|-. .|.-++.|.+|-+-+-.+|.+.+.
T Consensus 204 WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~ 264 (573)
T PLN00197 204 WVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG 264 (573)
T ss_pred HHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 987521 1212 222368888888888777776543
No 27
>PLN02161 beta-amylase
Probab=97.35 E-value=0.00061 Score=69.79 Aligned_cols=102 Identities=17% Similarity=0.248 Sum_probs=81.0
Q ss_pred CccccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEecc-CC-----------
Q 017505 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-HF----------- 143 (370)
Q Consensus 76 ~d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H~----------- 143 (370)
..+....+..++.+|.+|++.+-+.+=|--+|+++++++| |.-|+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 4556667889999999999999999999999999999999 66699999999999999887775 32
Q ss_pred CCcHhHHhhh-----------CCC----------------CCchhHHHHHHHHHHHHHHhCCCc
Q 017505 144 DLPQALEDEY-----------GGW----------------INRTIVKDFTAYADVCFRQFGDRV 180 (370)
Q Consensus 144 ~~P~wl~~~~-----------ggw----------------~~~~~~~~f~~ya~~v~~~~~d~V 180 (370)
.+|.|+.+.. .|. ..+.-++.|.+|-+-..++|.+..
T Consensus 190 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~ 253 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYI 253 (531)
T ss_pred cCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5999987520 122 222345788888888887777654
No 28
>PLN02801 beta-amylase
Probab=97.26 E-value=0.0014 Score=67.27 Aligned_cols=101 Identities=19% Similarity=0.389 Sum_probs=79.9
Q ss_pred ccccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEecc-C-----------CC
Q 017505 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------FD 144 (370)
Q Consensus 77 d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H-----------~~ 144 (370)
.+-...+..++.+|++|++.+-+.+=|--+|.++++++| |.-|+++++.+++.|++..+.|. | ..
T Consensus 34 ~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~Ip 110 (517)
T PLN02801 34 EDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYD---WSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIP 110 (517)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 334457889999999999999999999999999999999 66699999999999999877765 2 36
Q ss_pred CcHhHHhhh-----------CC----------------CCCchhHHHHHHHHHHHHHHhCCCc
Q 017505 145 LPQALEDEY-----------GG----------------WINRTIVKDFTAYADVCFRQFGDRV 180 (370)
Q Consensus 145 ~P~wl~~~~-----------gg----------------w~~~~~~~~f~~ya~~v~~~~~d~V 180 (370)
+|.|+.+.. .| +..+.-++.|.+|-+-..++|.+..
T Consensus 111 LP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 111 IPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred CCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999987521 12 1223346888888888888887754
No 29
>PLN02905 beta-amylase
Probab=97.15 E-value=0.0018 Score=67.72 Aligned_cols=101 Identities=14% Similarity=0.239 Sum_probs=79.3
Q ss_pred CccccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEecc-C-----------C
Q 017505 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------F 143 (370)
Q Consensus 76 ~d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H-----------~ 143 (370)
.......+..++.+|.+|++.+-+.+=|--+|+++++++| |.-|+++++.+++.|++..+.|. | .
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~Yd---WsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 358 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYN---WNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCI 358 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 3456667889999999999999999999999999999999 66699999999999999887775 3 2
Q ss_pred CCcHhHHhhh-----------CCCC----------------CchhHHHHHHHHHHHHHHhCCC
Q 017505 144 DLPQALEDEY-----------GGWI----------------NRTIVKDFTAYADVCFRQFGDR 179 (370)
Q Consensus 144 ~~P~wl~~~~-----------ggw~----------------~~~~~~~f~~ya~~v~~~~~d~ 179 (370)
.+|.|+.+.. .|.. .+.-++.|.+|-+-+.+.|.+.
T Consensus 359 PLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6999987520 1211 2334578888887777776654
No 30
>PLN02705 beta-amylase
Probab=97.06 E-value=0.0025 Score=66.45 Aligned_cols=99 Identities=16% Similarity=0.213 Sum_probs=78.0
Q ss_pred cccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEecc-C-----------CCC
Q 017505 78 GYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-H-----------FDL 145 (370)
Q Consensus 78 ~y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H-----------~~~ 145 (370)
.-...+..++.+|++|++.+-+.+=|--+|.++++++| |.-|+++++.+++.|++..+.|. | ..+
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 342 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYV---WSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISL 342 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccC
Confidence 34557889999999999999999999999999899999 66699999999999999877765 3 269
Q ss_pred cHhHHhhh-----------CCCC----------------CchhHHHHHHHHHHHHHHhCCC
Q 017505 146 PQALEDEY-----------GGWI----------------NRTIVKDFTAYADVCFRQFGDR 179 (370)
Q Consensus 146 P~wl~~~~-----------ggw~----------------~~~~~~~f~~ya~~v~~~~~d~ 179 (370)
|.|+.+.- .|.. .+.-++.|.+|.+.+-+.|.+.
T Consensus 343 P~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 343 PQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred CHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99987520 1211 2234578888888777777664
No 31
>PLN03059 beta-galactosidase; Provisional
Probab=97.00 E-value=0.0015 Score=71.04 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=85.9
Q ss_pred cCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEecc--------CCCCcHhHHh
Q 017505 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--------HFDLPQALED 151 (370)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~--------H~~~P~wl~~ 151 (370)
+.|++=|+.||++|+|++-+=+.|.--||. +|++|.+|..=..++|+.+.+.||-+++-.- ..++|.||..
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~-~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~ 137 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKY 137 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCC-CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhc
Confidence 457788999999999999999999999999 8999999999999999999999998877642 3579999975
Q ss_pred hhCCCC----CchhHHHHHHHHHHHHHHhC---------CCceeEEEecCCcc
Q 017505 152 EYGGWI----NRTIVKDFTAYADVCFRQFG---------DRVSYWTTVNEPNA 191 (370)
Q Consensus 152 ~~ggw~----~~~~~~~f~~ya~~v~~~~~---------d~V~~w~t~NEp~~ 191 (370)
. .|-. ++...++-.+|.+.+++.++ +-|-..++=||-..
T Consensus 138 ~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs 189 (840)
T PLN03059 138 V-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGP 189 (840)
T ss_pred C-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccc
Confidence 3 4422 44566666677777777663 23555667777543
No 32
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.86 E-value=0.011 Score=57.48 Aligned_cols=102 Identities=14% Similarity=0.267 Sum_probs=63.7
Q ss_pred HHHHHHHHhcCCCceeecc--ccccc-----ccCC-----C-C-----CCChhhhHHHHHHHHHHHHcCCeeEEeccCCC
Q 017505 83 KEDVKLMADTGLDAYRFSI--SWSRL-----IPNG-----R-G-----PVNPKGLQYYNNLINELISYGIQPHVTLHHFD 144 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si--~Wsri-----~P~g-----~-g-----~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~ 144 (370)
+.=++..++-|+|.+|+.+ .|... .|.. + + .+|++=+++.+++|+.|.+.||++.+.+.| +
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g 111 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-G 111 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--H
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-C
Confidence 3346778999999999998 45543 1110 1 1 279999999999999999999999877764 2
Q ss_pred CcHhHHhhhCCCCC---chhHHHHHHHHHHHHHHhCCC-ceeEEEecCC
Q 017505 145 LPQALEDEYGGWIN---RTIVKDFTAYADVCFRQFGDR-VSYWTTVNEP 189 (370)
Q Consensus 145 ~P~wl~~~~ggw~~---~~~~~~f~~ya~~v~~~~~d~-V~~w~t~NEp 189 (370)
.|. .+ +.|.. .-..+.-.+|.+.|++||+.. =..|++-||-
T Consensus 112 ~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 112 CPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred Ccc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 231 11 44543 335788899999999999998 4779998885
No 33
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.84 E-value=0.0026 Score=63.60 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=49.0
Q ss_pred CCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhh---CC-----CCCchhHHHHHHHHHHHHHHhCC---C
Q 017505 111 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEY---GG-----WINRTIVKDFTAYADVCFRQFGD---R 179 (370)
Q Consensus 111 ~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~---gg-----w~~~~~~~~f~~ya~~v~~~~~d---~ 179 (370)
+|.+|..+=+-=+.++++++++|++.++ ++-+..|.|+.... |+ =+.++..+.|++|-..|+++|.. .
T Consensus 95 dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~ 173 (384)
T PF14587_consen 95 DGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGIN 173 (384)
T ss_dssp TS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--
T ss_pred CCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCc
Confidence 6777765444556689999999999877 45567777775321 11 14567889999999999999943 5
Q ss_pred ceeEEEecCCcc
Q 017505 180 VSYWTTVNEPNA 191 (370)
Q Consensus 180 V~~w~t~NEp~~ 191 (370)
+.+-.++|||+.
T Consensus 174 f~~IsP~NEP~~ 185 (384)
T PF14587_consen 174 FDYISPFNEPQW 185 (384)
T ss_dssp EEEEE--S-TTS
T ss_pred cceeCCcCCCCC
Confidence 899999999994
No 34
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.69 E-value=0.0043 Score=60.44 Aligned_cols=87 Identities=18% Similarity=0.299 Sum_probs=70.9
Q ss_pred ecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEe--ccCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHh
Q 017505 99 FSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT--LHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQF 176 (370)
Q Consensus 99 ~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vt--L~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~ 176 (370)
--.-|.-|+|+ +|.+| ++.=|.+.+-++++||..--- +.|--.|.|+.. .-+..+...+...++..+|++||
T Consensus 65 nemKwe~i~p~-~G~f~---Fe~AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 65 NEMKWEAIEPE-RGRFN---FEAADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred cccccccccCC-CCccC---ccchHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 34579999998 89999 455789999999999985432 234467999853 23777889999999999999999
Q ss_pred CCCceeEEEecCCcc
Q 017505 177 GDRVSYWTTVNEPNA 191 (370)
Q Consensus 177 ~d~V~~w~t~NEp~~ 191 (370)
++.|..|=+.|||--
T Consensus 139 kg~~~sWDVVNE~vd 153 (345)
T COG3693 139 KGSVASWDVVNEAVD 153 (345)
T ss_pred cCceeEEEecccccC
Confidence 999999999999965
No 35
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.21 E-value=0.021 Score=55.32 Aligned_cols=92 Identities=15% Similarity=0.175 Sum_probs=62.2
Q ss_pred ccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhC----
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYG---- 154 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~g---- 154 (370)
...++.|+++||++|+|++|++- .|. + .++++.|-+.||-++.-+.....-.|- ..+
T Consensus 35 ~~~~~~d~~l~k~~G~N~iR~~h-----~p~-----~-------~~~~~~cD~~GilV~~e~~~~~~~~~~--~~~~~~~ 95 (298)
T PF02836_consen 35 DEAMERDLELMKEMGFNAIRTHH-----YPP-----S-------PRFYDLCDELGILVWQEIPLEGHGSWQ--DFGNCNY 95 (298)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETT-----S-------S-------HHHHHHHHHHT-EEEEE-S-BSCTSSS--STSCTSC
T ss_pred HHHHHHHHHHHHhcCcceEEccc-----ccC-----c-------HHHHHHHhhcCCEEEEeccccccCccc--cCCcccc
Confidence 56789999999999999999842 232 1 256778889999998776432111111 111
Q ss_pred CCCCchhHHHHHHHHHHHHHHhCCC--ceeEEEecCC
Q 017505 155 GWINRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEP 189 (370)
Q Consensus 155 gw~~~~~~~~f~~ya~~v~~~~~d~--V~~w~t~NEp 189 (370)
--.+++..+.+.+-++.+++++.++ |-.|.+.||+
T Consensus 96 ~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 96 DADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 0135677888888889999999874 9999999998
No 36
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.48 E-value=0.086 Score=47.06 Aligned_cols=101 Identities=17% Similarity=0.327 Sum_probs=65.0
Q ss_pred CcHHHHHHHHhcCCCceeecccccccc-----cCC--CCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhh
Q 017505 81 KYKEDVKLMADTGLDAYRFSISWSRLI-----PNG--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEY 153 (370)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~Wsri~-----P~g--~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ 153 (370)
+|+++++.|+++|++.+=+. |+... |.. ++.+.....+.+..+++++.++||++++.|+. -|.|.. .
T Consensus 21 ~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~-~- 94 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWD-Q- 94 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhh-c-
Confidence 58999999999999998644 54432 220 11222234578999999999999999999974 456654 2
Q ss_pred CCCCCch-hHHHHHHHHHHHHHHhCCC--ceeEEEecCCc
Q 017505 154 GGWINRT-IVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (370)
Q Consensus 154 ggw~~~~-~~~~f~~ya~~v~~~~~d~--V~~w~t~NEp~ 190 (370)
.+.+ -++.=..-++.+.++||.+ +.-|-+=.|+.
T Consensus 95 ---~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ---GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 1211 2233334567788888863 44454444443
No 37
>PRK10150 beta-D-glucuronidase; Provisional
Probab=95.46 E-value=0.052 Score=57.95 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=64.9
Q ss_pred CcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHh-------hh
Q 017505 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALED-------EY 153 (370)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~-------~~ 153 (370)
.+..|+++||++|+|++|++- .|. + .++++.|=+.||-++.-+.-+....|... ..
T Consensus 314 ~~~~d~~l~K~~G~N~vR~sh-----~p~-----~-------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~ 376 (604)
T PRK10150 314 LNVHDHNLMKWIGANSFRTSH-----YPY-----S-------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPK 376 (604)
T ss_pred HHHHHHHHHHHCCCCEEEecc-----CCC-----C-------HHHHHHHHhcCcEEEEeccccccccccccccccccccc
Confidence 467899999999999999952 232 1 15678888999988866543332223210 00
Q ss_pred CCCC----CchhHHHHHHHHHHHHHHhCCC--ceeEEEecCCc
Q 017505 154 GGWI----NRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (370)
Q Consensus 154 ggw~----~~~~~~~f~~ya~~v~~~~~d~--V~~w~t~NEp~ 190 (370)
..|. +++..+.+.+-++.++++++++ |-.|.+-||+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 377 ETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred ccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCC
Confidence 1222 3456778888899999999975 88999999973
No 38
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.18 E-value=0.091 Score=55.67 Aligned_cols=109 Identities=15% Similarity=0.167 Sum_probs=84.6
Q ss_pred cCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEec--------cCCCCcHhHHh
Q 017505 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--------HHFDLPQALED 151 (370)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL--------~H~~~P~wl~~ 151 (370)
+.|++=|+.+|++|+|++-.=+-|.-.||. +|++|.+|.-=..++|..+.+.|+-+++-+ .+-++|.||..
T Consensus 49 e~W~~~i~k~k~~Gln~IqtYVfWn~Hep~-~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~ 127 (649)
T KOG0496|consen 49 EMWPDLIKKAKAGGLNVIQTYVFWNLHEPS-PGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRN 127 (649)
T ss_pred hhhHHHHHHHHhcCCceeeeeeecccccCC-CCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhh
Confidence 457888999999999999999999999999 899999987778889999999998866543 35678988865
Q ss_pred hhCCC----CCchhHHHHHHHHHHHHHHhC-------CCceeEEEecCCc
Q 017505 152 EYGGW----INRTIVKDFTAYADVCFRQFG-------DRVSYWTTVNEPN 190 (370)
Q Consensus 152 ~~ggw----~~~~~~~~f~~ya~~v~~~~~-------d~V~~w~t~NEp~ 190 (370)
. .|- .|+.+..+..+|.+.++...+ +=|-.-++=||-.
T Consensus 128 ~-pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 128 V-PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred C-CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 4 442 356677888888888877443 2244455666654
No 39
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=92.92 E-value=0.34 Score=55.00 Aligned_cols=93 Identities=14% Similarity=0.092 Sum_probs=62.8
Q ss_pred ccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCC
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWIN 158 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~ 158 (370)
...+++||++||++|+|++|+| -.|. + .++.+.|=+.||-++--..-.....+.... ...+
T Consensus 370 ~e~~~~di~lmK~~g~NaVR~s-----HyP~-----~-------p~fydlcDe~GilV~dE~~~e~hg~~~~~~--~~~d 430 (1027)
T PRK09525 370 EETMVQDILLMKQHNFNAVRCS-----HYPN-----H-------PLWYELCDRYGLYVVDEANIETHGMVPMNR--LSDD 430 (1027)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCC-----C-------HHHHHHHHHcCCEEEEecCccccCCccccC--CCCC
Confidence 4567899999999999999995 2443 1 145678888999888664210001000000 1124
Q ss_pred chhHHHHHHHHHHHHHHhCCC--ceeEEEecCCc
Q 017505 159 RTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (370)
Q Consensus 159 ~~~~~~f~~ya~~v~~~~~d~--V~~w~t~NEp~ 190 (370)
++..+.+.+=++.+++|.+++ |-.|...||+.
T Consensus 431 p~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 431 PRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 556667777788899999985 89999999975
No 40
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=91.33 E-value=0.68 Score=52.59 Aligned_cols=90 Identities=16% Similarity=0.226 Sum_probs=62.4
Q ss_pred ccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEecc---C-CCCcHhHHhhhC
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH---H-FDLPQALEDEYG 154 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~---H-~~~P~wl~~~~g 154 (370)
...+++||++||++|+|++|++ ..|.. ..+.+.|=+.||-++--.. | |.... .+
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~s-----HyP~~------------~~fydlcDe~GllV~dE~~~e~~g~~~~~----~~- 411 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTA-----HYPND------------PRFYELCDIYGLFVMAETDVESHGFANVG----DI- 411 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCCC------------HHHHHHHHHCCCEEEECCcccccCccccc----cc-
Confidence 4678899999999999999996 24441 1567788899998776542 1 11100 00
Q ss_pred CC--CCchhHHHHHHHHHHHHHHhCCC--ceeEEEecCCc
Q 017505 155 GW--INRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPN 190 (370)
Q Consensus 155 gw--~~~~~~~~f~~ya~~v~~~~~d~--V~~w~t~NEp~ 190 (370)
.+ .++...+.|.+=++.+++|.+++ |-.|..-||..
T Consensus 412 ~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 412 SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 01 23344566777788999999985 88999999973
No 41
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=90.95 E-value=1.7 Score=42.42 Aligned_cols=87 Identities=22% Similarity=0.412 Sum_probs=62.2
Q ss_pred ccCcHHHHHHHHhcCCCceeec---ccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCC
Q 017505 79 YHKYKEDVKLMADTGLDAYRFS---ISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGG 155 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~s---i~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~gg 155 (370)
..||.+=.+++++.|||.+-+. ..-..|-|+ -++.+.++-+.++.+||++.+++. |..|.-+ ||
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt~~--------~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----gg 122 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLTPE--------YLDKVARLADVFRPYGIKVYLSVN-FASPIEL----GG 122 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGSTT--------THHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----TS
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcCHH--------HHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----CC
Confidence 4678888999999999998765 233333333 277788999999999999999997 8888654 55
Q ss_pred C-----CCchhHHHHHHHHHHHHHHhCC
Q 017505 156 W-----INRTIVKDFTAYADVCFRQFGD 178 (370)
Q Consensus 156 w-----~~~~~~~~f~~ya~~v~~~~~d 178 (370)
. ++++++..|.+=++.+.+++.|
T Consensus 123 L~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 123 LPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp -S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3 5678999999999999998866
No 42
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=89.76 E-value=1.4 Score=48.72 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=66.1
Q ss_pred ccccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCC
Q 017505 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGW 156 (370)
Q Consensus 77 d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw 156 (370)
-.+..+.+|+++||++|+|++|.| =.|.. .+..+.|-+.||-++=-..+ + -+++.
T Consensus 318 ~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~------------~~~ydLcDelGllV~~Ea~~-----~---~~~~~ 372 (808)
T COG3250 318 TDEDAMERDLKLMKEANMNSVRTS-----HYPNS------------EEFYDLCDELGLLVIDEAMI-----E---THGMP 372 (808)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEec-----CCCCC------------HHHHHHHHHhCcEEEEecch-----h---hcCCC
Confidence 335558999999999999999998 34441 25567777899988865543 1 12444
Q ss_pred CCchhHHHHHHHHHHHHHHhCCC--ceeEEEecCCcc
Q 017505 157 INRTIVKDFTAYADVCFRQFGDR--VSYWTTVNEPNA 191 (370)
Q Consensus 157 ~~~~~~~~f~~ya~~v~~~~~d~--V~~w~t~NEp~~ 191 (370)
..++..+...+=++..++|-+++ |-.|..=||.+.
T Consensus 373 ~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~~ 409 (808)
T COG3250 373 DDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESGH 409 (808)
T ss_pred CCcchhHHHHHHHHHHHHhccCCCcEEEEeccccccC
Confidence 55666667777788899998874 899999999663
No 43
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=88.61 E-value=0.77 Score=46.38 Aligned_cols=100 Identities=17% Similarity=0.262 Sum_probs=72.7
Q ss_pred HHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCC--CchhHHHHH
Q 017505 89 MADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWI--NRTIVKDFT 166 (370)
Q Consensus 89 ~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~--~~~~~~~f~ 166 (370)
-+|+|++-+|.---|.-++.. =-++ +..+++++|.+...|+.-+.+-.||..+.-...+|.+=. .....+.++
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~--~~~~---~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~ 88 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK--LFYP---FTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIA 88 (428)
T ss_pred hhhhceeeehhcceeeeeecc--ccCC---hHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHH
Confidence 478899999988888833322 2344 788999999999999666666667777665444333322 224789999
Q ss_pred HHHHHHHHHhCC-CceeE--EEecCCcccc
Q 017505 167 AYADVCFRQFGD-RVSYW--TTVNEPNAFA 193 (370)
Q Consensus 167 ~ya~~v~~~~~d-~V~~w--~t~NEp~~~~ 193 (370)
.+++-|+.++|- .|.-| ..+||||..+
T Consensus 89 ~fl~h~~~~vg~e~v~kw~f~~~~~pn~~a 118 (428)
T COG3664 89 AFLKHVIRRVGVEFVRKWPFYSPNEPNLLA 118 (428)
T ss_pred HHHHHHHHHhChhheeecceeecCCCCccc
Confidence 999999999995 36666 6999999865
No 44
>smart00642 Aamy Alpha-amylase domain.
Probab=83.58 E-value=2.9 Score=37.17 Aligned_cols=63 Identities=16% Similarity=0.285 Sum_probs=42.7
Q ss_pred ccCcHHHHHHHHhcCCCceeeccccccccc--CCCC-------CCCh--hhhHHHHHHHHHHHHcCCeeEEecc
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIP--NGRG-------PVNP--KGLQYYNNLINELISYGIQPHVTLH 141 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~Wsri~P--~g~g-------~~n~--~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (370)
+....+-++.++++|++++-++--+..... ...| .+|+ -..+-++++|++|+++||++++.+-
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 444566678899999999988765444321 1011 1121 1345689999999999999998863
No 45
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=78.77 E-value=13 Score=36.61 Aligned_cols=48 Identities=21% Similarity=0.379 Sum_probs=34.3
Q ss_pred CcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccC
Q 017505 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (370)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H 142 (370)
..+.||.+|++||+|++|+= -|-|. .| .|+-...+.++||-+++.|..
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~----~n------Hd~CM~~~~~aGIYvi~Dl~~ 101 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPS----KN------HDECMSAFADAGIYVILDLNT 101 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TT----S--------HHHHHHHHHTT-EEEEES-B
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCC----CC------HHHHHHHHHhCCCEEEEecCC
Confidence 56899999999999999973 34444 13 577888999999999999974
No 46
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=76.80 E-value=18 Score=35.91 Aligned_cols=87 Identities=17% Similarity=0.237 Sum_probs=64.1
Q ss_pred CCcCCccccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHh
Q 017505 72 GDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALED 151 (370)
Q Consensus 72 ~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~ 151 (370)
+-+|.=||+ |+-.+..++. |++.+|+. ||.+-. -+..+.+++.++++|+-.=+...|-.++.-+.+
T Consensus 74 PlVADIHFd-~~lAl~a~~~-g~dkiRIN----------PGNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~ 139 (346)
T TIGR00612 74 PLVADIHFD-YRLAALAMAK-GVAKVRIN----------PGNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLLE 139 (346)
T ss_pred CEEEeeCCC-cHHHHHHHHh-ccCeEEEC----------CCCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHH
Confidence 334666665 6666665554 99999863 455432 357899999999999999999999999999999
Q ss_pred hhCCCCCchhHHHHHHHHHHH
Q 017505 152 EYGGWINRTIVKDFTAYADVC 172 (370)
Q Consensus 152 ~~ggw~~~~~~~~f~~ya~~v 172 (370)
+||+-+.+..++--.++++.+
T Consensus 140 kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 140 KYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred HcCCCCHHHHHHHHHHHHHHH
Confidence 987645455666666666554
No 47
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=76.63 E-value=1.1 Score=46.18 Aligned_cols=109 Identities=16% Similarity=0.116 Sum_probs=77.3
Q ss_pred cHHHHHHHHhcCCCceeecccc-cccccCCCCCCChhh-hHHHHHHHHHHHHcCCeeEEecc----CCCCcHhHHhhhCC
Q 017505 82 YKEDVKLMADTGLDAYRFSISW-SRLIPNGRGPVNPKG-LQYYNNLINELISYGIQPHVTLH----HFDLPQALEDEYGG 155 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W-sri~P~g~g~~n~~~-~~~y~~~i~~l~~~Gi~p~vtL~----H~~~P~wl~~~~gg 155 (370)
.+.|++.++.+|++..|++|-= ..+- +..|..|.+. +.+.+.+++.+...+|+.++||. |+.--.|-..=.|+
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc~-d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~ 106 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDCR-DKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGE 106 (587)
T ss_pred hhcccccccCccceeEEEEEecCcchh-hhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCCC
Confidence 4568899999999999999522 2222 2257777665 88999999999999999999986 32222221100011
Q ss_pred ------CCCchhHHHHHHHHHHHHHHhCC--CceeEEEecCCcc
Q 017505 156 ------WINRTIVKDFTAYADVCFRQFGD--RVSYWTTVNEPNA 191 (370)
Q Consensus 156 ------w~~~~~~~~f~~ya~~v~~~~~d--~V~~w~t~NEp~~ 191 (370)
-..+.....|.+|++.+++.|+- .+--|..-|||-+
T Consensus 107 ~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 107 QSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 12345677899999999998885 4788999999765
No 48
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=76.22 E-value=11 Score=36.91 Aligned_cols=98 Identities=17% Similarity=0.316 Sum_probs=65.0
Q ss_pred cCcHHHHHHHHhcCCCceeecccc-------cccccCC---CCCC-ChhhhHHHHHHHHHHHHcCCeeEEec----cC--
Q 017505 80 HKYKEDVKLMADTGLDAYRFSISW-------SRLIPNG---RGPV-NPKGLQYYNNLINELISYGIQPHVTL----HH-- 142 (370)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~W-------sri~P~g---~g~~-n~~~~~~y~~~i~~l~~~Gi~p~vtL----~H-- 142 (370)
...++-++.++++|+|++=+.+.+ |.++|.. .|.. ...|++.+..+|++++++||++..-+ ..
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~ 98 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPD 98 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCc
Confidence 446778899999999998766543 2333321 1111 11257789999999999999987544 10
Q ss_pred -----CCCcHhHHhh-------h----CC--CCC---chhHHHHHHHHHHHHHHhC
Q 017505 143 -----FDLPQALEDE-------Y----GG--WIN---RTIVKDFTAYADVCFRQFG 177 (370)
Q Consensus 143 -----~~~P~wl~~~-------~----gg--w~~---~~~~~~f~~ya~~v~~~~~ 177 (370)
-..|.|+..+ + ++ |.| |++.+...+-++.|+++|.
T Consensus 99 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 99 VSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred hhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1246665421 1 22 544 5788899999999999996
No 49
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=74.07 E-value=11 Score=39.12 Aligned_cols=97 Identities=19% Similarity=0.225 Sum_probs=62.3
Q ss_pred cccCcHHH-----HHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHh----
Q 017505 78 GYHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQA---- 148 (370)
Q Consensus 78 ~y~~~~eD-----i~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~w---- 148 (370)
.|..|.+| ++...+.|++.+|+.++-+.+ +-..+.++.+++.|+....++.+-..|.+
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~ 154 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI-------------RNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEY 154 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH-------------HHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHH
Confidence 36678888 899999999999999866642 34567788888999988877765334521
Q ss_pred HHh------hh----------CCCCCchhHHHHHHHHHHHHHHhCCCceeEEEecCCcc
Q 017505 149 LED------EY----------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (370)
Q Consensus 149 l~~------~~----------ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~ 191 (370)
+.+ +. .|-.. +....+.++.+-++++ .--...+-|-..+
T Consensus 155 ~~~~a~~l~~~Gad~I~i~Dt~G~l~---P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~Gl 209 (467)
T PRK14041 155 YLEFARELVDMGVDSICIKDMAGLLT---PKRAYELVKALKKKFG-VPVEVHSHCTTGL 209 (467)
T ss_pred HHHHHHHHHHcCCCEEEECCccCCcC---HHHHHHHHHHHHHhcC-CceEEEecCCCCc
Confidence 111 00 34444 3455566666666665 2234456666554
No 50
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=73.83 E-value=12 Score=31.98 Aligned_cols=57 Identities=11% Similarity=0.150 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCceeeccc----ccccccCCCC--CCChhhhHHHHHHHHHHHHcCCeeEEeccC
Q 017505 84 EDVKLMADTGLDAYRFSIS----WSRLIPNGRG--PVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (370)
Q Consensus 84 eDi~l~~~lG~~~~R~si~----Wsri~P~g~g--~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H 142 (370)
+=++.+|++|++++-+... |+= .|..-| .+..+ -+.+.++|++|+++||++++=+..
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ay-YPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAY-YPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEE-ccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEee
Confidence 4468899999999999332 221 233222 22233 578999999999999999987654
No 51
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=73.05 E-value=12 Score=40.21 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=59.4
Q ss_pred ccCcHHH-----HHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCc----HhH
Q 017505 79 YHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP----QAL 149 (370)
Q Consensus 79 y~~~~eD-----i~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P----~wl 149 (370)
|.+|.+| ++..++.|++.+|+..+.+.+ +.....|+.++++|....+++.+=+.| ..+
T Consensus 91 ~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~-------------~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~ 157 (593)
T PRK14040 91 YRHYADDVVERFVERAVKNGMDVFRVFDAMNDP-------------RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTW 157 (593)
T ss_pred cccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH-------------HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHH
Confidence 6666666 999999999999999755443 345567777888888766555532334 222
Q ss_pred Hhh------h----------CCCCCchhHHHHHHHHHHHHHHhCCCceeEEEecCCcc
Q 017505 150 EDE------Y----------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (370)
Q Consensus 150 ~~~------~----------ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~ 191 (370)
.+. . .|-.. +....+.++.+-++++ .--...+-|-..+
T Consensus 158 ~~~a~~l~~~Gad~i~i~Dt~G~l~---P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 211 (593)
T PRK14040 158 VDLAKQLEDMGVDSLCIKDMAGLLK---PYAAYELVSRIKKRVD-VPLHLHCHATTGL 211 (593)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcC---HHHHHHHHHHHHHhcC-CeEEEEECCCCch
Confidence 210 0 23343 4455666666667773 3344567777765
No 52
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=72.91 E-value=13 Score=35.23 Aligned_cols=79 Identities=19% Similarity=0.151 Sum_probs=56.4
Q ss_pred cHHHHHHHHhcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCch
Q 017505 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRT 160 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~Wsri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~ 160 (370)
-.+|++...+.|++.+|+.++.+.+.-.. -+.-.+++++...++++.+++.|+++.+++.. .+..
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~~--- 136 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAED-----------ASRA--- 136 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeecc-----------CCCC---
Confidence 37899999999999999999888653220 13333567889999999999999988765521 2222
Q ss_pred hHHHHHHHHHHHHH
Q 017505 161 IVKDFTAYADVCFR 174 (370)
Q Consensus 161 ~~~~f~~ya~~v~~ 174 (370)
..+.+.+.++.+.+
T Consensus 137 ~~~~~~~~~~~~~~ 150 (259)
T cd07939 137 DPDFLIEFAEVAQE 150 (259)
T ss_pred CHHHHHHHHHHHHH
Confidence 35666666766654
No 53
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=72.00 E-value=11 Score=36.41 Aligned_cols=83 Identities=12% Similarity=0.049 Sum_probs=61.4
Q ss_pred CcHHHHHHHHhcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCc
Q 017505 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINR 159 (370)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~Wsri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~ 159 (370)
+-+.|+++.++.|++.+++.++=|...-.. -+.--++.++...++++.+++.|+++.+++-+|+.|. +
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r 143 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------R 143 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------c
Confidence 346799999999999999998555433221 1333467899999999999999999999998776552 1
Q ss_pred hhHHHHHHHHHHHHH
Q 017505 160 TIVKDFTAYADVCFR 174 (370)
Q Consensus 160 ~~~~~f~~ya~~v~~ 174 (370)
..++.+.++++.+.+
T Consensus 144 ~~~~~~~~~~~~~~~ 158 (280)
T cd07945 144 DSPDYVFQLVDFLSD 158 (280)
T ss_pred CCHHHHHHHHHHHHH
Confidence 135677777777655
No 54
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=70.62 E-value=13 Score=34.73 Aligned_cols=80 Identities=14% Similarity=0.030 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchh
Q 017505 83 KEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~Wsri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~ 161 (370)
+++++.+++.|++.+|++++-+.+.-.- -+.-.+..++...+.++.+++.|+++.+.+....-| ...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~~ 144 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KTD 144 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CCC
Confidence 8999999999999999999877321110 011123357788899999999999999999543322 123
Q ss_pred HHHHHHHHHHHHH
Q 017505 162 VKDFTAYADVCFR 174 (370)
Q Consensus 162 ~~~f~~ya~~v~~ 174 (370)
.+.+.++++.+.+
T Consensus 145 ~~~l~~~~~~~~~ 157 (265)
T cd03174 145 PEYVLEVAKALEE 157 (265)
T ss_pred HHHHHHHHHHHHH
Confidence 5566666666654
No 55
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.91 E-value=11 Score=39.22 Aligned_cols=111 Identities=20% Similarity=0.447 Sum_probs=68.7
Q ss_pred ccCcHHHHHHHHhcCCCceeec----ccccccccC-----------------------C-----CCCCChh----hhHHH
Q 017505 79 YHKYKEDVKLMADTGLDAYRFS----ISWSRLIPN-----------------------G-----RGPVNPK----GLQYY 122 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~s----i~Wsri~P~-----------------------g-----~g~~n~~----~~~~y 122 (370)
|.+|+..|+-|+-.|||..=.- +-|.+|+-. | .|...+. -+-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 7889999999999999976432 124444322 1 1222211 12233
Q ss_pred HHHHHHHHHcCCeeEEeccCCCCcHhHHhhh--------CCCCC------------c---hhHHHHHHHHHHHHHHhCCC
Q 017505 123 NNLINELISYGIQPHVTLHHFDLPQALEDEY--------GGWIN------------R---TIVKDFTAYADVCFRQFGDR 179 (370)
Q Consensus 123 ~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~--------ggw~~------------~---~~~~~f~~ya~~v~~~~~d~ 179 (370)
+++|+++++-||.|++--+---.|..|..-+ +.|.+ | -+.+-=..|-+...+.||+-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 6899999999999999888777888886532 33432 1 13333344556678889862
Q ss_pred ceeE--EEecCC
Q 017505 180 VSYW--TTVNEP 189 (370)
Q Consensus 180 V~~w--~t~NEp 189 (370)
-..+ =||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 2222 388884
No 56
>PLN02361 alpha-amylase
Probab=68.70 E-value=7.7 Score=39.54 Aligned_cols=66 Identities=18% Similarity=0.369 Sum_probs=45.8
Q ss_pred ccccCcHHHHHHHHhcCCCceeecccccccccCCCCC-----CChh--hhHHHHHHHHHHHHcCCeeEEe--ccC
Q 017505 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP-----VNPK--GLQYYNNLINELISYGIQPHVT--LHH 142 (370)
Q Consensus 77 d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~-----~n~~--~~~~y~~~i~~l~~~Gi~p~vt--L~H 142 (370)
.+|....+-++-+++||++++=++=...-.-+.|=.. +|.. ..+=++++|++|+++||++++. +.|
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 4788899999999999999998775433322222000 1111 1345899999999999999987 445
No 57
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=68.34 E-value=20 Score=34.35 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhH
Q 017505 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIV 162 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~ 162 (370)
.+|++...+.|++.+|+++..+ .++...++++.+++.|+++.+.+.+-. + -..
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~-------------~~~~~~~~i~~ak~~G~~v~~~~~~a~----------~----~~~ 137 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH-------------EFDEALPLIKAIKEKGYEVFFNLMAIS----------G----YSD 137 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc-------------cHHHHHHHHHHHHHCCCeEEEEEEeec----------C----CCH
Confidence 5789999999999999987432 367788999999999999999886411 1 135
Q ss_pred HHHHHHHHHHHH
Q 017505 163 KDFTAYADVCFR 174 (370)
Q Consensus 163 ~~f~~ya~~v~~ 174 (370)
+.+.++++.+.+
T Consensus 138 ~~~~~~~~~~~~ 149 (266)
T cd07944 138 EELLELLELVNE 149 (266)
T ss_pred HHHHHHHHHHHh
Confidence 677777777654
No 58
>PLN00196 alpha-amylase; Provisional
Probab=68.02 E-value=9.1 Score=39.35 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=43.0
Q ss_pred ccCcHHHHHHHHhcCCCceeecccccccccCCCCC-----CCh---hhhHHHHHHHHHHHHcCCeeEEe--ccC
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP-----VNP---KGLQYYNNLINELISYGIQPHVT--LHH 142 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~-----~n~---~~~~~y~~~i~~l~~~Gi~p~vt--L~H 142 (370)
|....+.++-+++||++++=++=......+.|=.. +|. -.-+=++++|++++++||++++. +.|
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH 116 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINH 116 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccC
Confidence 44567888999999999998885443332222001 121 01234899999999999999988 445
No 59
>PRK12313 glycogen branching enzyme; Provisional
Probab=67.67 E-value=20 Score=38.59 Aligned_cols=93 Identities=16% Similarity=0.300 Sum_probs=59.5
Q ss_pred ccCcHHH-HHHHHhcCCCceeecc--------cc-------cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEe--c
Q 017505 79 YHKYKED-VKLMADTGLDAYRFSI--------SW-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT--L 140 (370)
Q Consensus 79 y~~~~eD-i~l~~~lG~~~~R~si--------~W-------sri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vt--L 140 (370)
|.-..+. |+-+++||++++=+.= +| -.|.|. -|. .+=++++|++|.++||++|+. .
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~-~Gt-----~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSR-YGT-----PEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCC-CCC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 4444556 4899999999997542 12 122222 233 345889999999999999998 4
Q ss_pred cCCCCcH----hHH--------h---h-hCCC-------CCchhHHHHHHHHHHHHHHhC
Q 017505 141 HHFDLPQ----ALE--------D---E-YGGW-------INRTIVKDFTAYADVCFRQFG 177 (370)
Q Consensus 141 ~H~~~P~----wl~--------~---~-~ggw-------~~~~~~~~f~~ya~~v~~~~~ 177 (370)
.|..... ++. + . +..| .++++.+.+.+-++.-++.|+
T Consensus 243 nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 243 GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4653211 110 0 0 0123 367888888888888888877
No 60
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=67.64 E-value=16 Score=36.66 Aligned_cols=62 Identities=15% Similarity=0.082 Sum_probs=48.6
Q ss_pred CcHHHHHHHHhcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeccC
Q 017505 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (370)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~Wsri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H 142 (370)
-.++|++.+.+.|++.+|+.++-|.+.-.. -+.-.++.++...+.++.+++.|+++.+++-.
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed 134 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAED 134 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 358999999999999999998777654321 13223567888999999999999999888753
No 61
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=67.23 E-value=20 Score=34.74 Aligned_cols=86 Identities=13% Similarity=0.118 Sum_probs=62.0
Q ss_pred CcHHHHHHHHhcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeccC-CCCcHhHHhhhCCCCC
Q 017505 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHH-FDLPQALEDEYGGWIN 158 (370)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~Wsri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H-~~~P~wl~~~~ggw~~ 158 (370)
+-.+|+++..+.|++.+|+.++=|...-.. -+.--++.++...++|+.++++|+++..++.. |..| +.|..
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~------~~~~~- 152 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP------YEGEV- 152 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC------CCCCC-
Confidence 358999999999999999998655432110 23334567889999999999999999887763 4444 23333
Q ss_pred chhHHHHHHHHHHHHHH
Q 017505 159 RTIVKDFTAYADVCFRQ 175 (370)
Q Consensus 159 ~~~~~~f~~ya~~v~~~ 175 (370)
..+.+.++++.+.+.
T Consensus 153 --~~~~~~~~~~~~~~~ 167 (287)
T PRK05692 153 --PPEAVADVAERLFAL 167 (287)
T ss_pred --CHHHHHHHHHHHHHc
Confidence 367888888887654
No 62
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=67.13 E-value=20 Score=35.69 Aligned_cols=88 Identities=11% Similarity=0.203 Sum_probs=57.2
Q ss_pred HHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHH
Q 017505 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDF 165 (370)
Q Consensus 86 i~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f 165 (370)
++.++++|.+++-+-+-|. |+.+..+|..-+++..++.++|++.||..++-+.-++.+.-..+. .-+ .+.-++..
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~-~~~-a~~~p~~V 186 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKA-EEF-AKVKPEKV 186 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCcccccc-ccc-cccCHHHH
Confidence 5778999999999999887 553334577889999999999999999988864322222111000 001 11234555
Q ss_pred HHHHHHHHH-HhCC
Q 017505 166 TAYADVCFR-QFGD 178 (370)
Q Consensus 166 ~~ya~~v~~-~~~d 178 (370)
..-++.+.+ +||-
T Consensus 187 ~~a~r~~~~~elGa 200 (340)
T PRK12858 187 IKTMEEFSKPRYGV 200 (340)
T ss_pred HHHHHHHhhhccCC
Confidence 556666665 7873
No 63
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=66.77 E-value=31 Score=33.09 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=49.9
Q ss_pred cHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchh
Q 017505 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~ 161 (370)
-++|+++..+.|++.+|+++..+. ++...+.++.+++.|+++.+++.--+ + .+-.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~-------------~~~~~~~i~~ak~~G~~v~~~i~~~~---------~---~~~~ 147 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND-------------VRNLEVAIKAVKKAGKHVEGAICYTG---------S---PVHT 147 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh-------------HHHHHHHHHHHHHCCCeEEEEEEecC---------C---CCCC
Confidence 478999999999999999876554 45677899999999999887663101 1 2223
Q ss_pred HHHHHHHHHHHHHH
Q 017505 162 VKDFTAYADVCFRQ 175 (370)
Q Consensus 162 ~~~f~~ya~~v~~~ 175 (370)
.+.+.++++.+.+.
T Consensus 148 ~~~~~~~~~~~~~~ 161 (275)
T cd07937 148 LEYYVKLAKELEDM 161 (275)
T ss_pred HHHHHHHHHHHHHc
Confidence 56777777776553
No 64
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=66.19 E-value=3.2 Score=32.64 Aligned_cols=19 Identities=42% Similarity=0.767 Sum_probs=14.0
Q ss_pred HHHHhCC--CceeEEEecC-Cc
Q 017505 172 CFRQFGD--RVSYWTTVNE-PN 190 (370)
Q Consensus 172 v~~~~~d--~V~~w~t~NE-p~ 190 (370)
|+++||+ +|.+|..+|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4667775 7999999999 66
No 65
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=66.08 E-value=26 Score=37.16 Aligned_cols=93 Identities=17% Similarity=0.293 Sum_probs=58.6
Q ss_pred cccCcHHHHHHHHhcCCCceeecc--------cc-------cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEec--
Q 017505 78 GYHKYKEDVKLMADTGLDAYRFSI--------SW-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-- 140 (370)
Q Consensus 78 ~y~~~~eDi~l~~~lG~~~~R~si--------~W-------sri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL-- 140 (370)
-+.-..+-++-+++||++++-+.= .| -.+.|. -|. .+=++++|++|.++||++|+.+
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~-~G~-----~~e~k~lV~~aH~~Gi~VilD~V~ 182 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNA-YGG-----PDDLKALVDAAHGLGLGVILDVVY 182 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccc-cCC-----HHHHHHHHHHHHHCCCEEEEEEcc
Confidence 355556678999999999997652 12 112222 122 3458899999999999999984
Q ss_pred cCCC---------CcHhHHhh-hCCC------CCc---hhHHHHHHHHHHHHHHhC
Q 017505 141 HHFD---------LPQALEDE-YGGW------INR---TIVKDFTAYADVCFRQFG 177 (370)
Q Consensus 141 ~H~~---------~P~wl~~~-~ggw------~~~---~~~~~f~~ya~~v~~~~~ 177 (370)
.|.. .| |+... ..+| .++ ++.+.+.+-++.-++.|+
T Consensus 183 NH~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 183 NHFGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred CCCCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 4543 12 32211 1233 244 677777777777777666
No 66
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=65.61 E-value=24 Score=36.50 Aligned_cols=92 Identities=11% Similarity=0.018 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcH----hHHh---h---
Q 017505 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQ----ALED---E--- 152 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~----wl~~---~--- 152 (370)
++|++...+.|++.+|+.++-+.+. ...+.|+.+++.|+.+.+++..-+-|. .+.+ +
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~-------------n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~ 165 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVR-------------NLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQE 165 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHH-------------HHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 5667999999999999998666541 255689999999999888777655562 2111 1
Q ss_pred h----------CCCCCchhHHHHHHHHHHHHHHhCCCceeEEEecCCcc
Q 017505 153 Y----------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (370)
Q Consensus 153 ~----------ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~ 191 (370)
. .|..+| ....+.++.+-++++ ..-.+.+-|-..+
T Consensus 166 ~Gad~I~i~Dt~G~l~P---~~v~~lv~alk~~~~-~pi~~H~Hnt~Gl 210 (448)
T PRK12331 166 MGADSICIKDMAGILTP---YVAYELVKRIKEAVT-VPLEVHTHATSGI 210 (448)
T ss_pred cCCCEEEEcCCCCCCCH---HHHHHHHHHHHHhcC-CeEEEEecCCCCc
Confidence 0 355554 355556666667775 3345567776655
No 67
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=65.42 E-value=37 Score=32.85 Aligned_cols=105 Identities=15% Similarity=0.185 Sum_probs=66.0
Q ss_pred cHHHHHHHHhcC--CCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCC---CCcHhHHhhh---
Q 017505 82 YKEDVKLMADTG--LDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALEDEY--- 153 (370)
Q Consensus 82 ~~eDi~l~~~lG--~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~---~~P~wl~~~~--- 153 (370)
..+-++.+++.| ++++=+.+.|.+-.-.++=.+|++.+--.+.+|++|++.|+++++.+.-+ +.|..-+.+-
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~ 105 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGY 105 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCe
Confidence 456778889999 55566777887432111123465556667899999999999988876522 2232211100
Q ss_pred ------------------CC---CCCchhHHHHHHHHHHHHHHhCCCce-eEEEecCC
Q 017505 154 ------------------GG---WINRTIVKDFTAYADVCFRQFGDRVS-YWTTVNEP 189 (370)
Q Consensus 154 ------------------gg---w~~~~~~~~f~~ya~~v~~~~~d~V~-~w~t~NEp 189 (370)
++ ++||+..+.|.+..+.+.+ +| |+ +|.=+|||
T Consensus 106 ~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~ 160 (308)
T cd06593 106 LVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGER 160 (308)
T ss_pred EEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCC
Confidence 11 5778888888777775544 33 44 45668887
No 68
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=64.96 E-value=21 Score=35.73 Aligned_cols=84 Identities=11% Similarity=-0.001 Sum_probs=60.7
Q ss_pred cHHHHHHHHhcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeccC-CCCcHhHHhhhCCCCCc
Q 017505 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHH-FDLPQALEDEYGGWINR 159 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~Wsri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H-~~~P~wl~~~~ggw~~~ 159 (370)
-.+|++...+.|++.+++.++=|...-.. -+.--++.++.+.++|+.++++|+++.+++.. |..| +.|-.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p------~~~r~-- 194 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCP------IEGPV-- 194 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCC------ccCCC--
Confidence 57999999999999999998665543321 23334678999999999999999999877753 4444 12222
Q ss_pred hhHHHHHHHHHHHHH
Q 017505 160 TIVKDFTAYADVCFR 174 (370)
Q Consensus 160 ~~~~~f~~ya~~v~~ 174 (370)
.++.+.++++.+.+
T Consensus 195 -~~~~l~~~~~~~~~ 208 (347)
T PLN02746 195 -PPSKVAYVAKELYD 208 (347)
T ss_pred -CHHHHHHHHHHHHH
Confidence 35677777777655
No 69
>PRK05402 glycogen branching enzyme; Provisional
Probab=64.95 E-value=28 Score=38.26 Aligned_cols=93 Identities=14% Similarity=0.216 Sum_probs=58.4
Q ss_pred ccCcHHHH-HHHHhcCCCceeeccc--------c-------cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEec--
Q 017505 79 YHKYKEDV-KLMADTGLDAYRFSIS--------W-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL-- 140 (370)
Q Consensus 79 y~~~~eDi-~l~~~lG~~~~R~si~--------W-------sri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL-- 140 (370)
|.-..+.+ +-+++||++++=+.=- | -.|.|. =|. .+=++++|++|.++||++|+.+
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~-~Gt-----~~dfk~lV~~~H~~Gi~VilD~V~ 337 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSR-FGT-----PDDFRYFVDACHQAGIGVILDWVP 337 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcc-cCC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 33334453 7789999999976521 2 122222 132 3458899999999999999984
Q ss_pred cCCCCc-----------HhHHh-----hhCCC-------CCchhHHHHHHHHHHHHHHhC
Q 017505 141 HHFDLP-----------QALED-----EYGGW-------INRTIVKDFTAYADVCFRQFG 177 (370)
Q Consensus 141 ~H~~~P-----------~wl~~-----~~ggw-------~~~~~~~~f~~ya~~v~~~~~ 177 (370)
.|+... .+... .+..| .++++.+.+.+-++.-+++|+
T Consensus 338 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 338 AHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 465321 11000 01123 467888888888888888877
No 70
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=64.93 E-value=13 Score=34.90 Aligned_cols=57 Identities=23% Similarity=0.472 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCCceeecccccccccCC-CC-------CCCh--hhhHHHHHHHHHHHHcCCeeEEecc
Q 017505 83 KEDVKLMADTGLDAYRFSISWSRLIPNG-RG-------PVNP--KGLQYYNNLINELISYGIQPHVTLH 141 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~Wsri~P~g-~g-------~~n~--~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (370)
.+-|+.+++||++++-++=-+. .|.+ .| .+|+ -..+=++++|++|+++||++|+++-
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~--~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFE--SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EE--SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccc--cccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4567899999999999874443 1111 11 1121 1355689999999999999999874
No 71
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=64.22 E-value=13 Score=38.47 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=41.6
Q ss_pred ccccCcHHHHHHHHhcCCCceeeccccccc--------ccCC---------CCCCChh--hhHHHHHHHHHHHHcCCeeE
Q 017505 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRL--------IPNG---------RGPVNPK--GLQYYNNLINELISYGIQPH 137 (370)
Q Consensus 77 d~y~~~~eDi~l~~~lG~~~~R~si~Wsri--------~P~g---------~g~~n~~--~~~~y~~~i~~l~~~Gi~p~ 137 (370)
+.|....+-++-+++||++++=++=...-. -|.- +|.+|+. ..+=++++|++|.++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 345555677899999999999877433221 1110 0112211 24458999999999999999
Q ss_pred Eec
Q 017505 138 VTL 140 (370)
Q Consensus 138 vtL 140 (370)
+.+
T Consensus 99 ~D~ 101 (479)
T PRK09441 99 ADV 101 (479)
T ss_pred EEE
Confidence 984
No 72
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=64.11 E-value=15 Score=38.83 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=41.2
Q ss_pred ccccCcHHHHHHHHhcCCCceeeccccc--------------ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEecc
Q 017505 77 DGYHKYKEDVKLMADTGLDAYRFSISWS--------------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (370)
Q Consensus 77 d~y~~~~eDi~l~~~lG~~~~R~si~Ws--------------ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (370)
..+.-..+-++-+++||++++=++=-.. +|.|. -| ..+=++++|++|+++||++|+++-
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~-~G-----t~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPL-FG-----TMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcc-cC-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3455566778999999999987653222 22222 11 245689999999999999999853
No 73
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=64.01 E-value=17 Score=36.25 Aligned_cols=95 Identities=14% Similarity=0.245 Sum_probs=58.6
Q ss_pred cHHHHHHHHhcCCCceeecccccccccCC---CCCCChhhhHHHHHHHHHHHHcCCee-EEeccCCCCcHhHHhhhCCCC
Q 017505 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNNLINELISYGIQP-HVTLHHFDLPQALEDEYGGWI 157 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~Wsri~P~g---~g~~n~~~~~~y~~~i~~l~~~Gi~p-~vtL~H~~~P~wl~~~~ggw~ 157 (370)
-+|.++.++++|++.+-+++ .-+-++- -|... ..+-+.+.|+.+++.|+.. -+.+. +++|.
T Consensus 98 t~e~l~~l~~~G~~rvsiGv--qS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli-~GlPg---------- 162 (374)
T PRK05799 98 TEEKLKILKSMGVNRLSIGL--QAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLM-FGLPN---------- 162 (374)
T ss_pred CHHHHHHHHHcCCCEEEEEC--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEee-cCCCC----------
Confidence 46789999999999555444 3333221 23321 2556778999999999974 35554 56663
Q ss_pred CchhHHHHHHHHHHHHHHhCCCceeEEEecCCcccc
Q 017505 158 NRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFA 193 (370)
Q Consensus 158 ~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~~~ 193 (370)
++.+.|.+-.+.+.+.=-++|..+...-+|+...
T Consensus 163 --qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l 196 (374)
T PRK05799 163 --QTLEDWKETLEKVVELNPEHISCYSLIIEEGTPF 196 (374)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHH
Confidence 1355666666666554335666665555777543
No 74
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=63.40 E-value=21 Score=35.73 Aligned_cols=60 Identities=22% Similarity=0.133 Sum_probs=46.6
Q ss_pred cHHHHHHHHhcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEecc
Q 017505 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~Wsri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (370)
-.+|++.+.+.|++.+|+.++-|.+.-.. -+.-.++.++...+.|+.+++.|+++.+++.
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e 134 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGE 134 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec
Confidence 38999999999999999999877543221 1222356788899999999999999887654
No 75
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=62.95 E-value=18 Score=33.75 Aligned_cols=78 Identities=17% Similarity=0.363 Sum_probs=53.2
Q ss_pred CccccCcHHHHHHHHhcCCCceee----------------------cccccccccCCCCCCChhhhHHHHHHHHHHHHcC
Q 017505 76 CDGYHKYKEDVKLMADTGLDAYRF----------------------SISWSRLIPNGRGPVNPKGLQYYNNLINELISYG 133 (370)
Q Consensus 76 ~d~y~~~~eDi~l~~~lG~~~~R~----------------------si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~G 133 (370)
.+---.-+.-|+|+++||.+++.| ++ | +||. |-+| ++.+..++..|++.|
T Consensus 131 ~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPT--GGId---l~Nf~~I~~i~ldaG 202 (236)
T TIGR03581 131 KEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPT--GGID---LDNFEEIVQIALDAG 202 (236)
T ss_pred CCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCC--CCcc---HHhHHHHHHHHHHcC
Confidence 334456778899999999999875 33 3 6777 5678 788999999999999
Q ss_pred CeeEEeccCCCCcHhHHhhhCCCCCchhHHHH
Q 017505 134 IQPHVTLHHFDLPQALEDEYGGWINRTIVKDF 165 (370)
Q Consensus 134 i~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f 165 (370)
++-++ .|. =..+.++-.|-+.++-+...
T Consensus 203 v~kvi--PHI--YssiIDk~tG~TrpedV~~l 230 (236)
T TIGR03581 203 VEKVI--PHV--YSSIIDKETGNTRVEDVKQL 230 (236)
T ss_pred CCeec--ccc--ceeccccccCCCCHHHHHHH
Confidence 99773 231 01122343566776654443
No 76
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=62.84 E-value=26 Score=36.50 Aligned_cols=57 Identities=18% Similarity=0.357 Sum_probs=43.5
Q ss_pred ccCcHHH-----HHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHh
Q 017505 79 YHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQA 148 (370)
Q Consensus 79 y~~~~eD-----i~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~w 148 (370)
|..|.+| +++.++.|++.+|+.-.... ++-....|+.+++.|.+..+++.+=+.|..
T Consensus 99 y~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd-------------~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~ 160 (468)
T PRK12581 99 YRHYADDIVDKFISLSAQNGIDVFRIFDALND-------------PRNIQQALRAVKKTGKEAQLCIAYTTSPVH 160 (468)
T ss_pred ccCCcchHHHHHHHHHHHCCCCEEEEcccCCC-------------HHHHHHHHHHHHHcCCEEEEEEEEEeCCcC
Confidence 7788889 89999999999998653221 445667888888888888888887656633
No 77
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=62.81 E-value=16 Score=38.84 Aligned_cols=64 Identities=16% Similarity=0.309 Sum_probs=42.3
Q ss_pred CccccCcHHHHHHHHhcCCCceeecccccccccCCCCC--------CChh--hhHHHHHHHHHHHHcCCeeEEecc
Q 017505 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP--------VNPK--GLQYYNNLINELISYGIQPHVTLH 141 (370)
Q Consensus 76 ~d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~--------~n~~--~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (370)
..-+.-..+.++-+++||++++=++=-+.. |..... +|+. ..+-++++|++++++||++++.+-
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 344555678899999999999977643211 110111 1111 235589999999999999998853
No 78
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=62.22 E-value=47 Score=32.36 Aligned_cols=84 Identities=15% Similarity=0.096 Sum_probs=52.7
Q ss_pred HHHHhcCCCceeeccc--ccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHH
Q 017505 87 KLMADTGLDAYRFSIS--WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKD 164 (370)
Q Consensus 87 ~l~~~lG~~~~R~si~--Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~ 164 (370)
+.+++.|++++-+++- -....|.-.|...........+.|..|+++|++++|++-.+.-... -.+...++.
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~-------~~~~~~~~~ 91 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPL-------ATSCTSADQ 91 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCcc-------ccCcccHHH
Confidence 5677889999988753 2223332112111011234577899999999999998854332110 014457788
Q ss_pred HHHHHHHHHHHhC
Q 017505 165 FTAYADVCFRQFG 177 (370)
Q Consensus 165 f~~ya~~v~~~~~ 177 (370)
|++....+.++|+
T Consensus 92 ~~~a~~~~i~~y~ 104 (294)
T cd06543 92 LAAAYQKVIDAYG 104 (294)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888888987
No 79
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=61.70 E-value=20 Score=34.32 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=40.6
Q ss_pred cHHHHHHHHhcCCCceeecccccc-cccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEec
Q 017505 82 YKEDVKLMADTGLDAYRFSISWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~Wsr-i~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (370)
-+|.++.|+++|++.+-++++-+. +.+.-.+..+ ++.+.+.++.++++||.+.+.+
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s---~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHT---YDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCC---HHHHHHHHHHHHHcCCEEEEeE
Confidence 489999999999999999988221 3332112223 6678899999999999865543
No 80
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=61.08 E-value=22 Score=34.37 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=53.4
Q ss_pred cccccccccCCcCCCCCcCCccccCcHHHHHHHHhcCCCceeecccccccccCCC-CCCChhhhHHHHHHHHHHHHcCCe
Q 017505 57 SIWDTFAHAGNVHGTGDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQ 135 (370)
Q Consensus 57 s~wd~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~-g~~n~~~~~~y~~~i~~l~~~Gi~ 135 (370)
+.|+-|...... ..+..+.-.+.++++=|+..+++|+..+=+.--|+.-.+... +......-....++++..+++|+.
T Consensus 10 ~~W~Ww~~~~~~-~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVg 88 (273)
T PF10566_consen 10 AAWSWWSMHNGK-GVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVG 88 (273)
T ss_dssp EEECTCCCCTTS-SBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-E
T ss_pred EEEeecccCCCC-CCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 567766532110 112234456788999999999999999999999997332211 111111123478999999999999
Q ss_pred eEEeccC
Q 017505 136 PHVTLHH 142 (370)
Q Consensus 136 p~vtL~H 142 (370)
+++-.+|
T Consensus 89 i~lw~~~ 95 (273)
T PF10566_consen 89 IWLWYHS 95 (273)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9999987
No 81
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=59.56 E-value=64 Score=32.16 Aligned_cols=85 Identities=20% Similarity=0.286 Sum_probs=60.0
Q ss_pred CCccccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhC
Q 017505 75 ACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYG 154 (370)
Q Consensus 75 a~d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~g 154 (370)
|-=||+ |+=-++ ..+.|+..+|+ - ||.+-.+ +....+++.++++|+-.=+...|-.+..-+.++|+
T Consensus 79 aDiHf~-~rla~~-~~~~g~~k~RI-------N---PGNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~ 144 (361)
T COG0821 79 ADIHFD-YRLALE-AAECGVDKVRI-------N---PGNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYG 144 (361)
T ss_pred EEeecc-HHHHHH-hhhcCcceEEE-------C---CcccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhc
Confidence 444555 433333 34567888875 3 4444322 37899999999999999999999999999999998
Q ss_pred CCCCchhHHHHHHHHHHHH
Q 017505 155 GWINRTIVKDFTAYADVCF 173 (370)
Q Consensus 155 gw~~~~~~~~f~~ya~~v~ 173 (370)
+-+.+..++--.++++.+-
T Consensus 145 ~pt~ealveSAl~~a~~~e 163 (361)
T COG0821 145 GPTPEALVESALEHAELLE 163 (361)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 7666656666666665543
No 82
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=59.38 E-value=79 Score=31.36 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=41.6
Q ss_pred cHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEecc--CCCCcHhH
Q 017505 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH--HFDLPQAL 149 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~--H~~~P~wl 149 (370)
..+|++...+.|++.+|+....+.. +...+.|+.+++.|++..+.+. |...|..+
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~-------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l 145 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEA-------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKL 145 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchH-------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHH
Confidence 3689999999999999998865543 2356899999999999887773 43344433
No 83
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=58.36 E-value=7.7 Score=28.87 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=31.9
Q ss_pred cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCC
Q 017505 104 SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF 143 (370)
Q Consensus 104 sri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~ 143 (370)
+++.|. ++.=.+++++..-+++..|.++|| +++.|++-
T Consensus 19 s~l~p~-~~~d~~kaldiCaeIL~cLE~R~i-sWl~LFql 56 (64)
T PF03511_consen 19 SYLAPK-EGADSLKALDICAEILGCLEKRKI-SWLVLFQL 56 (64)
T ss_pred HhcCcc-cccccHHHHHHHHHHHHHHHhCCC-cHHHhhhc
Confidence 578888 555567899999999999999999 88888763
No 84
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=58.33 E-value=31 Score=34.77 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEecc
Q 017505 83 KEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~Wsri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (370)
++|++.+.+.|++.+|+.++-|.+.-.. -+.--++.++...+.++.+++.|+++.++..
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e 137 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE 137 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 7899999999999999999777653221 1333467889999999999999999988854
No 85
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=57.98 E-value=39 Score=36.23 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=61.7
Q ss_pred HHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCc----HhHHhh------
Q 017505 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP----QALEDE------ 152 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P----~wl~~~------ 152 (370)
++|++...+.|++.+|+..+.+.+ +-....++.++++|+.+.+++.+-+.| ..+.+.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~ 160 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP-------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLE 160 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 455899999999999999776653 236677889999999998887765555 222110
Q ss_pred h----------CCCCCchhHHHHHHHHHHHHHHhCCCceeEEEecCCcc
Q 017505 153 Y----------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (370)
Q Consensus 153 ~----------ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~ 191 (370)
. .|...| ....+.++.+-++++ .--...+-|-..+
T Consensus 161 ~Gad~I~i~Dt~G~~~P---~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 161 MGVDSICIKDMAGILTP---KAAYELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred cCCCEEEECCCCCCcCH---HHHHHHHHHHHHhCC-CceEEEecCCCCc
Confidence 0 344444 456666666767775 3335677777765
No 86
>PRK09505 malS alpha-amylase; Reviewed
Probab=57.92 E-value=22 Score=38.76 Aligned_cols=63 Identities=17% Similarity=0.324 Sum_probs=41.7
Q ss_pred cHHHHHHHHhcCCCceeecccccccc-----------cC-C-CC-------CCChh--hhHHHHHHHHHHHHcCCeeEEe
Q 017505 82 YKEDVKLMADTGLDAYRFSISWSRLI-----------PN-G-RG-------PVNPK--GLQYYNNLINELISYGIQPHVT 139 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~Wsri~-----------P~-g-~g-------~~n~~--~~~~y~~~i~~l~~~Gi~p~vt 139 (370)
..+-++.+++||++++=++=-...+. |. + .| .+|+. ..+=++++|++++++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 55668899999999998874433321 10 0 01 11221 3456899999999999999998
Q ss_pred c--cCCC
Q 017505 140 L--HHFD 144 (370)
Q Consensus 140 L--~H~~ 144 (370)
+ .|-.
T Consensus 312 ~V~NH~~ 318 (683)
T PRK09505 312 VVMNHTG 318 (683)
T ss_pred ECcCCCc
Confidence 4 4543
No 87
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=57.88 E-value=54 Score=33.24 Aligned_cols=52 Identities=12% Similarity=0.323 Sum_probs=41.7
Q ss_pred cCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEecc
Q 017505 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (370)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (370)
..|++||++.+++||+.|=+.|- . ...+. .+....+++++.+.|.+.++++.
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~-~d~~~---~~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------S-SDSWQ---PDQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------c-CCccc---HHHHHHHHHHHHhcCCEEEEEec
Confidence 45899999999999999999886 1 12333 35678899999999999998875
No 88
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=57.44 E-value=17 Score=34.81 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=46.1
Q ss_pred cHHHHHHHHhcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEecc
Q 017505 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~Wsri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (370)
-.+|++...+.|++.+|+.++=|...-.. -+.--++.++...+++..+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 73 HMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 36799999999999999988654422111 2222356799999999999999999999884
No 89
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=57.34 E-value=7.9 Score=23.60 Aligned_cols=16 Identities=44% Similarity=0.613 Sum_probs=11.9
Q ss_pred CchHHHHHHHHHHHHH
Q 017505 1 MMLRLSFLLMYLLNLA 16 (370)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (370)
||-||+||++.++.++
T Consensus 6 mmKkil~~l~a~~~La 21 (25)
T PF08139_consen 6 MMKKILFPLLALFMLA 21 (25)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5789999988776543
No 90
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=57.08 E-value=52 Score=35.41 Aligned_cols=93 Identities=13% Similarity=0.153 Sum_probs=59.1
Q ss_pred ccCcHHHH-HHHHhcCCCceeec-ccccc--------------cccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEecc-
Q 017505 79 YHKYKEDV-KLMADTGLDAYRFS-ISWSR--------------LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH- 141 (370)
Q Consensus 79 y~~~~eDi-~l~~~lG~~~~R~s-i~Wsr--------------i~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~- 141 (370)
|.-..+.+ +-+++||++++=+. |.... +.|. =|. .+=++++|++|.++||++|+.+-
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~-~Gt-----~~dlk~lV~~~H~~Gi~VilD~V~ 228 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSR-FGT-----PDDFMYFVDACHQAGIGVILDWVP 228 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccc-cCC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 33344564 88999999999874 43321 1111 122 33588999999999999999854
Q ss_pred -CCCC-----------cHhHHh-----hhCCC-------CCchhHHHHHHHHHHHHHHhC
Q 017505 142 -HFDL-----------PQALED-----EYGGW-------INRTIVKDFTAYADVCFRQFG 177 (370)
Q Consensus 142 -H~~~-----------P~wl~~-----~~ggw-------~~~~~~~~f~~ya~~v~~~~~ 177 (370)
|... |.+... .+..| .++++.+.+.+-++.-++.|+
T Consensus 229 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 229 GHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 5431 111110 00112 357888999999999998887
No 91
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=56.49 E-value=59 Score=32.23 Aligned_cols=78 Identities=13% Similarity=0.210 Sum_probs=46.7
Q ss_pred ChhhhHHHHHHHHHHHHcCCeeEEeccCC-CCcHhHHh--hhCCCCCchhHHHHHHHHHHHHHHhCCCceeEEEecCCcc
Q 017505 115 NPKGLQYYNNLINELISYGIQPHVTLHHF-DLPQALED--EYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (370)
Q Consensus 115 n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~-~~P~wl~~--~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~ 191 (370)
|++.+---+++++.|++.|++.++.+.-+ ..-..+.. .+--|+|++..+.|.+..+.+.+ .| -.-.|+=+|||.+
T Consensus 59 d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~G-v~~~W~DmnEp~~ 136 (332)
T cd06601 59 NGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IG-LEFVWQDMTTPAI 136 (332)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CC-CceeecCCCCccc
Confidence 33333335689999999999987765411 10000000 01236788888877666554433 23 3458899999998
Q ss_pred ccc
Q 017505 192 FAN 194 (370)
Q Consensus 192 ~~~ 194 (370)
+..
T Consensus 137 ~~~ 139 (332)
T cd06601 137 MPS 139 (332)
T ss_pred ccC
Confidence 654
No 92
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=56.14 E-value=40 Score=31.96 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhH
Q 017505 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIV 162 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~ 162 (370)
.+|++..++.|++.+|+.++.+.+ +-..+.++.+++.|+++.+++..- +..+ +
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~-------------~~~~~~i~~ak~~G~~v~~~~~~~-----------~~~~---~ 140 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA-------------DVSEQHIGAARKLGMDVVGFLMMS-----------HMAS---P 140 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH-------------HHHHHHHHHHHHCCCeEEEEEEec-----------cCCC---H
Confidence 699999999999999998877653 235789999999999999988431 2222 3
Q ss_pred HHHHHHHHHHHH
Q 017505 163 KDFTAYADVCFR 174 (370)
Q Consensus 163 ~~f~~ya~~v~~ 174 (370)
+.+.+.++.+.+
T Consensus 141 ~~~~~~~~~~~~ 152 (263)
T cd07943 141 EELAEQAKLMES 152 (263)
T ss_pred HHHHHHHHHHHH
Confidence 566666666543
No 93
>PRK14705 glycogen branching enzyme; Provisional
Probab=55.78 E-value=50 Score=38.50 Aligned_cols=89 Identities=16% Similarity=0.193 Sum_probs=55.1
Q ss_pred HHHHHhcCCCceeec-c-------cccccccCC----CCCCChhhhHHHHHHHHHHHHcCCeeEEec--cCCCCcHhHHh
Q 017505 86 VKLMADTGLDAYRFS-I-------SWSRLIPNG----RGPVNPKGLQYYNNLINELISYGIQPHVTL--HHFDLPQALED 151 (370)
Q Consensus 86 i~l~~~lG~~~~R~s-i-------~Wsri~P~g----~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL--~H~~~P~wl~~ 151 (370)
|+-+|+||++++=+. | +|- -.|.+ +..+ -..+=++.+|++|.++||.+|+.+ .|+..=.|...
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ry--Gt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~ 848 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRF--GHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALA 848 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCccc--CCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhh
Confidence 688999999999654 2 231 11111 0111 023348899999999999999984 45521122111
Q ss_pred hh----------------CC-------CCCchhHHHHHHHHHHHHHHhC
Q 017505 152 EY----------------GG-------WINRTIVKDFTAYADVCFRQFG 177 (370)
Q Consensus 152 ~~----------------gg-------w~~~~~~~~f~~ya~~v~~~~~ 177 (370)
.+ .. +.++++.+.+.+=+..-+++|+
T Consensus 849 ~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 849 QFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred hcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 11 11 2356788888888888888887
No 94
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=55.60 E-value=49 Score=31.80 Aligned_cols=84 Identities=13% Similarity=0.140 Sum_probs=60.6
Q ss_pred cHHHHHHHHhcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeccC-CCCcHhHHhhhCCCCCc
Q 017505 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHH-FDLPQALEDEYGGWINR 159 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~Wsri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H-~~~P~wl~~~~ggw~~~ 159 (370)
-.+|++...+.|++.+++.++=|.+.-.- -+.--++.++...+.++.+++.|+++.+++.. |+.| +.|-.
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~------~~~~~-- 146 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP------YEGEV-- 146 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC------CCCCC--
Confidence 37899999999999999998655432110 12223567899999999999999999988763 5554 12322
Q ss_pred hhHHHHHHHHHHHHH
Q 017505 160 TIVKDFTAYADVCFR 174 (370)
Q Consensus 160 ~~~~~f~~ya~~v~~ 174 (370)
..+.+.++++.+.+
T Consensus 147 -~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 -PPERVAEVAERLLD 160 (274)
T ss_pred -CHHHHHHHHHHHHH
Confidence 46778888888765
No 95
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=55.15 E-value=60 Score=31.79 Aligned_cols=108 Identities=16% Similarity=0.273 Sum_probs=69.4
Q ss_pred HHHHHHHHhcCCC-ceeecc-ccc-ccc-c-CCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCC
Q 017505 83 KEDVKLMADTGLD-AYRFSI-SWS-RLI-P-NGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWI 157 (370)
Q Consensus 83 ~eDi~l~~~lG~~-~~R~si-~Ws-ri~-P-~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~ 157 (370)
+|.+++|+++|++ .+=+++ +-+ ++. . -++|. + .+-+.+.++.++++||.+.+.+. +++|. ..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~-t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P~--------~s 183 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGS-T---FEDFIRAAELARKYGAGVKAYLL-FKPPF--------LS 183 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCC-C---HHHHHHHHHHHHHcCCcEEEEEE-ecCCC--------CC
Confidence 7889999999987 466665 222 222 1 12333 3 45688999999999999777765 45552 22
Q ss_pred CchhHHHHHHHHHHHHHHhCCCceeEEEecCCccccccccccCCCCC
Q 017505 158 NRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAPP 204 (370)
Q Consensus 158 ~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~~~~~gy~~g~~~P 204 (370)
..+.++.+.+.++.+.+. ++.|....+.=+|+.....-|..|.+.|
T Consensus 184 e~ea~ed~~~ti~~~~~l-~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 184 EKEAIADMISSIRKCIPV-TDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhhHHHHHHHHHHHHhc-CCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 235678888888877654 5777777666566654333355566543
No 96
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=54.75 E-value=24 Score=33.40 Aligned_cols=122 Identities=13% Similarity=0.175 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHcCCeeEEeccCCC--------------CcHhHHhh----------------hCC----CCCch---h
Q 017505 119 LQYYNNLINELISYGIQPHVTLHHFD--------------LPQALEDE----------------YGG----WINRT---I 161 (370)
Q Consensus 119 ~~~y~~~i~~l~~~Gi~p~vtL~H~~--------------~P~wl~~~----------------~gg----w~~~~---~ 161 (370)
.+.++.+|+..++.|.++|+||.=.+ .|.|-..+ .+| ..+|+ .
T Consensus 23 g~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~ 102 (239)
T PF12891_consen 23 GDVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDN 102 (239)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSS
T ss_pred HHHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCcc
Confidence 46799999999999999999986211 12211000 011 11333 1
Q ss_pred HHHHHHHHHHHHHHhCCC-----ceeEEEecCCccccccccccCCCCCCCCCCcccCCCCCCCChhHHHHHHHHHHHHHH
Q 017505 162 VKDFTAYADVCFRQFGDR-----VSYWTTVNEPNAFANLGYDYGIAPPQRCSSINHCSRGNSSTEPYITVHHVLLAHASV 236 (370)
Q Consensus 162 ~~~f~~ya~~v~~~~~d~-----V~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~qa~hnlllAHA~A 236 (370)
..+-.+++..+..+||.. |++|..-|||.+..-- =-..+|-. ..+.-+....++.|+|
T Consensus 103 ~~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~T--H~dVHP~~---------------~t~~El~~r~i~~Aka 165 (239)
T PF12891_consen 103 PVYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHST--HRDVHPEP---------------VTYDELRDRSIEYAKA 165 (239)
T ss_dssp EEEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHH--TTTT--S------------------HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhccccCCCceEEEecCchHhhccc--ccccCCCC---------------CCHHHHHHHHHHHHHH
Confidence 123345577777777764 9999999999974210 00122211 1233445556666655
Q ss_pred HHHHHHHccCCCCcceEEeeeCCccc
Q 017505 237 ARLYRKKYQDKQRGYIGVNIFAFGLL 262 (370)
Q Consensus 237 v~~~re~~~~~~~~kIG~~~~~~~~y 262 (370)
+ |+.+|.. -.+|.+...-..|
T Consensus 166 i---K~~DP~a--~v~GP~~wgw~~y 186 (239)
T PF12891_consen 166 I---KAADPDA--KVFGPVEWGWCGY 186 (239)
T ss_dssp H---HHH-TTS--EEEEEEE-SHHHH
T ss_pred H---HhhCCCC--eEeechhhcccee
Confidence 5 5566753 3577775443333
No 97
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=54.56 E-value=31 Score=32.05 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=41.6
Q ss_pred ccCcHHHHHHHHhcCCCceeecccccccccCCC--CCCChhhhHHHHHHHHHHHHcCCeeEEe-ccCCCCc
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVT-LHHFDLP 146 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~--g~~n~~~~~~y~~~i~~l~~~Gi~p~vt-L~H~~~P 146 (370)
-+.+++-|++++++|.+.+|+-..+. |... .+.....++..+++.+.+.+.||...+= +.+++.|
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 35566778999999999998644321 2110 1112334566888888899999987774 3444444
No 98
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=54.10 E-value=67 Score=32.25 Aligned_cols=72 Identities=21% Similarity=0.309 Sum_probs=53.6
Q ss_pred HhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHH
Q 017505 90 ADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYA 169 (370)
Q Consensus 90 ~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya 169 (370)
.+.|++.+|+ - ||.+-. --+..+.+++.++++|+-.=+...|-.++.-+.++||+-+.+..++--.+++
T Consensus 98 ~~~G~~~iRI-------N---PGNig~-~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~ 166 (360)
T PRK00366 98 AEAGADALRI-------N---PGNIGK-RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHA 166 (360)
T ss_pred HHhCCCEEEE-------C---CCCCCc-hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3569999964 3 455521 0256889999999999999999999999999999986534445666666666
Q ss_pred HHH
Q 017505 170 DVC 172 (370)
Q Consensus 170 ~~v 172 (370)
+.+
T Consensus 167 ~~l 169 (360)
T PRK00366 167 KIL 169 (360)
T ss_pred HHH
Confidence 654
No 99
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=54.04 E-value=65 Score=31.91 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCCeeEEeccCCCC--------cHhHHh--h-----------h--------C---CCCCchhHHHHHHHHH
Q 017505 123 NNLINELISYGIQPHVTLHHFDL--------PQALED--E-----------Y--------G---GWINRTIVKDFTAYAD 170 (370)
Q Consensus 123 ~~~i~~l~~~Gi~p~vtL~H~~~--------P~wl~~--~-----------~--------g---gw~~~~~~~~f~~ya~ 170 (370)
+++|+.|++.|++.++.+.-+-. +.+-+. + + + -++|++.++.|.+..+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 78999999999998887754322 222110 0 0 1 2678888888877777
Q ss_pred HHHHHhCCCceeEEEecCCcc
Q 017505 171 VCFRQFGDRVSYWTTVNEPNA 191 (370)
Q Consensus 171 ~v~~~~~d~V~~w~t~NEp~~ 191 (370)
.+...+| -.-+|.=+|||..
T Consensus 149 ~~~~~~G-vdg~w~D~~Ep~~ 168 (339)
T cd06602 149 DFHDQVP-FDGLWIDMNEPSN 168 (339)
T ss_pred HHHhcCC-CcEEEecCCCCch
Confidence 6666554 2466789999964
No 100
>PRK12677 xylose isomerase; Provisional
Probab=54.03 E-value=88 Score=31.67 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=55.0
Q ss_pred CcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeE-EeccCCCCcHhHHhhhCCCCCc
Q 017505 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWINR 159 (370)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~wl~~~~ggw~~~ 159 (370)
..+|-++.++++|++.+=+.. ..+.|-+ ....+--+..+++-+.+.++||++. +|...|..|.+ +.|++.++
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~--~~l~p~~--~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHD--DDLVPFG--ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecc--cccCCCC--CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 468889999999999885522 2344431 1111111247788888999999976 55555555654 34788875
Q ss_pred h--hHHHHHHHHHH---HHHHhCC
Q 017505 160 T--IVKDFTAYADV---CFRQFGD 178 (370)
Q Consensus 160 ~--~~~~f~~ya~~---v~~~~~d 178 (370)
+ ..+.-.++.+. ++..+|-
T Consensus 105 d~~~R~~Ai~~~~r~IdlA~eLGa 128 (384)
T PRK12677 105 DRDVRRYALRKVLRNIDLAAELGA 128 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4 23332444443 4556664
No 101
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=53.55 E-value=77 Score=30.78 Aligned_cols=106 Identities=18% Similarity=0.262 Sum_probs=70.8
Q ss_pred cHHHHHHHHhcCC--CceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCC---CcHhHH------
Q 017505 82 YKEDVKLMADTGL--DAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD---LPQALE------ 150 (370)
Q Consensus 82 ~~eDi~l~~~lG~--~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~---~P~wl~------ 150 (370)
..+-++.+++.|+ +++=+.+.|..-. |+=.+|.+.+---.++++.+++.|+++++.+.=+- .+..-+
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~ 109 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGY 109 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCe
Confidence 4556778888885 4666666785421 22245666666678999999999999988765321 121111
Q ss_pred ---hhhC----------C------CCCchhHHHHHHHHHHHHHHhCCCceeEEEecCCc
Q 017505 151 ---DEYG----------G------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (370)
Q Consensus 151 ---~~~g----------g------w~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~ 190 (370)
++.| | ++||+..+.|.+..+.+...+| ---+|+=+|||.
T Consensus 110 ~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~ 167 (303)
T cd06592 110 LVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYG-IDSFKFDAGEAS 167 (303)
T ss_pred EEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhC-CcEEEeCCCCcc
Confidence 0001 1 6789999999998888887775 245568899997
No 102
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=53.32 E-value=43 Score=32.01 Aligned_cols=81 Identities=15% Similarity=0.076 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCCceeecccccccccC-CCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchh
Q 017505 83 KEDVKLMADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTI 161 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~Wsri~P~-g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~ 161 (370)
+.+++++++.|++.+|+.++=|.+.-. .-|.--++.++...+.++.+++.|+++.++.-+| .+ +. +..
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~------~d--~~---~~~ 149 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF------FD--GY---KAN 149 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec------cc--cC---CCC
Confidence 368999999999999998764433211 1233336678999999999999999998876554 11 11 123
Q ss_pred HHHHHHHHHHHHH
Q 017505 162 VKDFTAYADVCFR 174 (370)
Q Consensus 162 ~~~f~~ya~~v~~ 174 (370)
.+.+.++++.+.+
T Consensus 150 ~~~~~~~~~~~~~ 162 (273)
T cd07941 150 PEYALATLKAAAE 162 (273)
T ss_pred HHHHHHHHHHHHh
Confidence 5666777777755
No 103
>PRK10785 maltodextrin glucosidase; Provisional
Probab=53.17 E-value=30 Score=37.06 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=39.0
Q ss_pred CcHHHHHHHHhcCCCceeecc-------------cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEecc
Q 017505 81 KYKEDVKLMADTGLDAYRFSI-------------SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (370)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si-------------~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (370)
-..+-++-+++||++++=++= ++-+|.|. -| ..+=++++|++|+++||++|+.+-
T Consensus 180 GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~-~G-----t~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 180 GISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQ-LG-----GDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcc-cC-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 345668899999999988763 12223333 12 234588999999999999998853
No 104
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=53.10 E-value=39 Score=32.10 Aligned_cols=77 Identities=12% Similarity=0.055 Sum_probs=52.8
Q ss_pred HHHHHHHHhcC----CCceeecccccccc--cCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCC
Q 017505 83 KEDVKLMADTG----LDAYRFSISWSRLI--PNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGW 156 (370)
Q Consensus 83 ~eDi~l~~~lG----~~~~R~si~Wsri~--P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw 156 (370)
.+|++...+.| ++.+|+.++.+.+. -. -+.--++.++...+.++.+++.|+++.++..+ .+.
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~-~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~ 139 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYK-LKKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATR 139 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCC
Confidence 78999999999 99999987665442 22 12222356788889999999999987755431 222
Q ss_pred CCchhHHHHHHHHHHHHH
Q 017505 157 INRTIVKDFTAYADVCFR 174 (370)
Q Consensus 157 ~~~~~~~~f~~ya~~v~~ 174 (370)
. .++.+.+.++.+.+
T Consensus 140 ~---~~~~~~~~~~~~~~ 154 (268)
T cd07940 140 T---DLDFLIEVVEAAIE 154 (268)
T ss_pred C---CHHHHHHHHHHHHH
Confidence 2 35666777776654
No 105
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=52.65 E-value=27 Score=36.86 Aligned_cols=56 Identities=14% Similarity=0.353 Sum_probs=38.7
Q ss_pred ccCcHHHHHHHHhcCCCceeecccc--------------cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEec
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSISW--------------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W--------------sri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (370)
+.-..+-++-+++||++++=++=-. .+|.|. -| ..+=++++|++++++||++|+.+
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~-~G-----t~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPE-FG-----TIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChh-hC-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 3344566889999999998765211 122222 11 24568999999999999999874
No 106
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=52.49 E-value=2.4e+02 Score=27.72 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=33.7
Q ss_pred ccccc---CCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCC
Q 017505 104 SRLIP---NGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF 143 (370)
Q Consensus 104 sri~P---~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~ 143 (370)
.+..| ...+-++.+-+..++++.+.++++|-..++=|.|-
T Consensus 63 ~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~ 105 (338)
T cd04733 63 HLEEPGIIGNVVLESGEDLEAFREWAAAAKANGALIWAQLNHP 105 (338)
T ss_pred cccCCCcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEccCC
Confidence 45566 33567788899999999999999999999999993
No 107
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=52.02 E-value=42 Score=34.56 Aligned_cols=105 Identities=14% Similarity=0.131 Sum_probs=66.2
Q ss_pred cHHHHHHHHhcCCCceeecc-cccc-cccCCCCCCChhhhHHHHHHHHHHHHcC-CeeEEeccCCCCcHhHHhhhCCCCC
Q 017505 82 YKEDVKLMADTGLDAYRFSI-SWSR-LIPNGRGPVNPKGLQYYNNLINELISYG-IQPHVTLHHFDLPQALEDEYGGWIN 158 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~Wsr-i~P~g~g~~n~~~~~~y~~~i~~l~~~G-i~p~vtL~H~~~P~wl~~~~ggw~~ 158 (370)
-+|.+++|+++|+|.+-+++ +-+. +... -|... ..+-..+.|+.+++.| +.+.++|. +++|.-
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~-lgR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPgq---------- 227 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRR-AGRKD--DREEVLARLEELVARDRAAVVCDLI-FGLPGQ---------- 227 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHH-hCCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCCC----------
Confidence 36889999999999888877 4432 2222 23322 1345668899999999 67777776 677731
Q ss_pred chhHHHHHHHHHHHHHHhCCCceeEEEecCCccccccccccCCC
Q 017505 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIA 202 (370)
Q Consensus 159 ~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~~~~~gy~~g~~ 202 (370)
+.+.|.+=.+.+.+.=-+.|..+...-||+......+..|.+
T Consensus 228 --T~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l 269 (449)
T PRK09058 228 --TPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKL 269 (449)
T ss_pred --CHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCC
Confidence 234455545555554446788888888888643333333444
No 108
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=51.84 E-value=56 Score=32.43 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccC
Q 017505 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H 142 (370)
.+|++...+.|++.+|+...+++. +.-.+.|+.+++.|++..+++..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~-------------~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA-------------DVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH-------------HHHHHHHHHHHHCCCeEEEEEEe
Confidence 589999999999999999866653 23578999999999999988853
No 109
>PRK03705 glycogen debranching enzyme; Provisional
Probab=51.41 E-value=31 Score=37.55 Aligned_cols=54 Identities=17% Similarity=0.321 Sum_probs=36.6
Q ss_pred HHHHHhcCCCceeecc--c---------------c-------cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEec
Q 017505 86 VKLMADTGLDAYRFSI--S---------------W-------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (370)
Q Consensus 86 i~l~~~lG~~~~R~si--~---------------W-------sri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (370)
|+-+|+||++++=+.= + | -.++|. =|.-....++=++++|++|.++||++|+.+
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~-ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPA-YASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccc-cCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 8899999999997641 1 1 122222 121111235669999999999999999884
No 110
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=51.31 E-value=1.1e+02 Score=29.80 Aligned_cols=63 Identities=16% Similarity=0.366 Sum_probs=45.2
Q ss_pred cHHHHHHHHhcCCCceeeccc----ccc---cccC------------CCCCCChhhhHHHHHHHHHHHHcCCeeEEeccC
Q 017505 82 YKEDVKLMADTGLDAYRFSIS----WSR---LIPN------------GRGPVNPKGLQYYNNLINELISYGIQPHVTLHH 142 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~----Wsr---i~P~------------g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H 142 (370)
.++-|+.|+..++|.+.+-++ |+- ..|+ +.|.+.++- ++++++.++++||++|.-+
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~d---i~elv~yA~~rgI~viPEi-- 92 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQ---LKDIIEYAAARGIEVIPEI-- 92 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHH---HHHHHHHHHHcCCEEEEec--
Confidence 567799999999999987775 522 1222 123455444 7899999999999999877
Q ss_pred CCCcHhHH
Q 017505 143 FDLPQALE 150 (370)
Q Consensus 143 ~~~P~wl~ 150 (370)
|+|....
T Consensus 93 -D~PGH~~ 99 (303)
T cd02742 93 -DMPGHST 99 (303)
T ss_pred -cchHHHH
Confidence 4676543
No 111
>PLN02784 alpha-amylase
Probab=49.66 E-value=33 Score=38.40 Aligned_cols=66 Identities=18% Similarity=0.312 Sum_probs=46.7
Q ss_pred ccccCcHHHHHHHHhcCCCceeecccccccccCCCCC-----CChh--hhHHHHHHHHHHHHcCCeeEEe--ccC
Q 017505 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP-----VNPK--GLQYYNNLINELISYGIQPHVT--LHH 142 (370)
Q Consensus 77 d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~-----~n~~--~~~~y~~~i~~l~~~Gi~p~vt--L~H 142 (370)
.+|....+.++-+++||++++=++=...-..+.|=.. +|.. ..+=++++|++|+++||++++. +.|
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH 592 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNH 592 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccc
Confidence 5688899999999999999998775433333322000 1111 2345899999999999999988 455
No 112
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=49.64 E-value=1.2e+02 Score=29.68 Aligned_cols=79 Identities=13% Similarity=0.182 Sum_probs=48.0
Q ss_pred CChhhhHHHHHHHHHHHHcCCeeEEeccCC---CCcHhHHhh---h-----------------CC---CCCchhHHHHHH
Q 017505 114 VNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALEDE---Y-----------------GG---WINRTIVKDFTA 167 (370)
Q Consensus 114 ~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~---~~P~wl~~~---~-----------------gg---w~~~~~~~~f~~ 167 (370)
+|.+.+---.++|+.|+++|+++++.++-+ +.+.+-+-+ | ++ |+||+..+.|.+
T Consensus 60 ~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~ 139 (319)
T cd06591 60 FDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWK 139 (319)
T ss_pred EChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHH
Confidence 355555556799999999999988876422 122211100 0 11 567777777766
Q ss_pred HHHHHHHHhCCCceeEEEecCCcccc
Q 017505 168 YADVCFRQFGDRVSYWTTVNEPNAFA 193 (370)
Q Consensus 168 ya~~v~~~~~d~V~~w~t~NEp~~~~ 193 (370)
..+..+...| ---+|+=+|||....
T Consensus 140 ~~~~~~~~~G-vdg~w~D~~Ep~~~~ 164 (319)
T cd06591 140 QLKKNYYDKG-VDAWWLDAAEPEYSV 164 (319)
T ss_pred HHHHHhhcCC-CcEEEecCCCCCccC
Confidence 5554443333 356778999998653
No 113
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=48.65 E-value=96 Score=31.44 Aligned_cols=84 Identities=19% Similarity=0.390 Sum_probs=57.4
Q ss_pred HHHHHHHHhc-CCCceeecc--cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeE-EeccCCCCcHhHHhhhCCCCC
Q 017505 83 KEDVKLMADT-GLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWIN 158 (370)
Q Consensus 83 ~eDi~l~~~l-G~~~~R~si--~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~wl~~~~ggw~~ 158 (370)
-+|++.+..+ +++ .++++ .|+.. ..+.++.+.++++||++. ++...|..|.+ ++|.++|
T Consensus 43 ~~d~~~v~~L~~~~-~~v~lH~~~d~~-------------~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~---~~GSLt~ 105 (378)
T TIGR02635 43 IEDAALVHRLTGIC-PTVALHIPWDRV-------------EDYEELARYAEELGLKIGAINPNLFQDDDY---KFGSLTH 105 (378)
T ss_pred HHHHHHHHhhcCCC-CceeeccCCccc-------------cCHHHHHHHHHHcCCceeeeeCCccCCccc---CCCCCCC
Confidence 4677777777 555 66666 44211 237788888999999998 78777766654 4578887
Q ss_pred ch--hHHHHHHHHHHH---HHHhCCC-ceeE
Q 017505 159 RT--IVKDFTAYADVC---FRQFGDR-VSYW 183 (370)
Q Consensus 159 ~~--~~~~f~~ya~~v---~~~~~d~-V~~w 183 (370)
++ +.+.-.++++.| ++.+|.. |..|
T Consensus 106 pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW 136 (378)
T TIGR02635 106 PDKRIRRKAIDHLLECVDIAKKTGSKDISLW 136 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 64 667777887764 5778763 4444
No 114
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=48.62 E-value=35 Score=37.34 Aligned_cols=62 Identities=19% Similarity=0.384 Sum_probs=41.8
Q ss_pred ccCcHHH--HHHHHhcCCCceee----cccccccccC-CC---------------CC--CCh---hhhHHHHHHHHHHHH
Q 017505 79 YHKYKED--VKLMADTGLDAYRF----SISWSRLIPN-GR---------------GP--VNP---KGLQYYNNLINELIS 131 (370)
Q Consensus 79 y~~~~eD--i~l~~~lG~~~~R~----si~Wsri~P~-g~---------------g~--~n~---~~~~~y~~~i~~l~~ 131 (370)
|--..+- |+-+|+||++++.+ ++.+-+-.++ |. |. .++ ..++=++++|++|.+
T Consensus 197 y~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHk 276 (697)
T COG1523 197 YLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHK 276 (697)
T ss_pred eehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHH
Confidence 3334444 99999999999984 3444443321 10 11 133 257779999999999
Q ss_pred cCCeeEEec
Q 017505 132 YGIQPHVTL 140 (370)
Q Consensus 132 ~Gi~p~vtL 140 (370)
+||++|+..
T Consensus 277 aGI~VILDV 285 (697)
T COG1523 277 AGIEVILDV 285 (697)
T ss_pred cCCEEEEEE
Confidence 999999874
No 115
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=48.42 E-value=30 Score=35.29 Aligned_cols=53 Identities=25% Similarity=0.498 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCCceeec-------------c-cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEec--cC
Q 017505 84 EDVKLMADTGLDAYRFS-------------I-SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--HH 142 (370)
Q Consensus 84 eDi~l~~~lG~~~~R~s-------------i-~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL--~H 142 (370)
+-++.+++||++++=++ + .+.+|.|. .| .++-.++++++++++||++++++ .|
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~-~G-----t~~d~~~li~~~H~~gi~vi~D~V~NH 101 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPH-FG-----TEEDFKELVEEAHKRGIKVILDLVFNH 101 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcc-cC-----CHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 56788999999998443 1 22333332 22 36678999999999999999997 55
No 116
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=48.24 E-value=1.7e+02 Score=28.40 Aligned_cols=145 Identities=19% Similarity=0.159 Sum_probs=79.3
Q ss_pred ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCC---cHhHH---------hhhCCCC------C---chhHH
Q 017505 105 RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL---PQALE---------DEYGGWI------N---RTIVK 163 (370)
Q Consensus 105 ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~---P~wl~---------~~~ggw~------~---~~~~~ 163 (370)
+..|...|-++++-+..++++++.++++|-..++=|.|-+. |.... ....... . .++++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~ 141 (327)
T cd02803 62 KGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIE 141 (327)
T ss_pred cCCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHH
Confidence 34555457788899999999999999999999999999431 11000 0000001 1 24677
Q ss_pred HHHHHHHHHHHHhCCCceeEEEecCCccccccccccCCC-CCCC--CCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 017505 164 DFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIA-PPQR--CSSINHCSRGNSSTEPYITVHHVLLAHASVARLY 240 (370)
Q Consensus 164 ~f~~ya~~v~~~~~d~V~~w~t~NEp~~~~~~gy~~g~~-~Pg~--~~~~~~~~~~~~~~~~~qa~hnlllAHA~Av~~~ 240 (370)
.|++-|+.+.+.==|-|. +..-+||+...| -|.. +.+. .+- .+-|-..--.+.++.+
T Consensus 142 ~~~~aA~~a~~aGfDgve---------ih~~~gyL~~qFlsp~~n~R~d~----yGg-------s~enr~r~~~eii~av 201 (327)
T cd02803 142 DFAAAARRAKEAGFDGVE---------IHGAHGYLLSQFLSPYTNKRTDE----YGG-------SLENRARFLLEIVAAV 201 (327)
T ss_pred HHHHHHHHHHHcCCCEEE---------EcchhhhHHHHhcCccccCCCcc----cCC-------CHHHHHHHHHHHHHHH
Confidence 888877777653213332 333457765544 3321 1110 111 1123333334567777
Q ss_pred HHHccCCCCcceEEeeeCCccccCCCcHHHH
Q 017505 241 RKKYQDKQRGYIGVNIFAFGLLPLTNSTEDA 271 (370)
Q Consensus 241 re~~~~~~~~kIG~~~~~~~~yP~s~~p~D~ 271 (370)
|+... .+..||+-++.....+...++++.
T Consensus 202 r~~~g--~d~~i~vris~~~~~~~g~~~~e~ 230 (327)
T cd02803 202 REAVG--PDFPVGVRLSADDFVPGGLTLEEA 230 (327)
T ss_pred HHHcC--CCceEEEEechhccCCCCCCHHHH
Confidence 77542 134688877765544433345554
No 117
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=47.80 E-value=70 Score=32.78 Aligned_cols=87 Identities=15% Similarity=0.323 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCCceeecc--cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeE-EeccCCCCcHh--HHhhhCCCC
Q 017505 83 KEDVKLMADTGLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQA--LEDEYGGWI 157 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si--~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~w--l~~~~ggw~ 157 (370)
-+|+..+.++.--..|+++ .|.. +|.+.++ +.++++||..- +...-|..|+- -.=++|...
T Consensus 73 i~D~~~v~~Lt~~~~~v~LH~~wd~--------vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLt 138 (412)
T TIGR02629 73 LEDCAVIQQLTRATPNVSLHIPWDK--------ADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLS 138 (412)
T ss_pred HHHHHHHHhhcCCCCCccccCCCCc--------CCHHHHH------HHHHHcCCccceeccccccCcccccccccccccC
Confidence 4788888888777777775 7822 3544443 89999999998 77766766732 111347788
Q ss_pred Cch--hHHHHHHHHHHH---HHHhCCC-ceeE
Q 017505 158 NRT--IVKDFTAYADVC---FRQFGDR-VSYW 183 (370)
Q Consensus 158 ~~~--~~~~f~~ya~~v---~~~~~d~-V~~w 183 (370)
||+ +.+...+-+..| .+..|.+ |..|
T Consensus 139 nPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW 170 (412)
T TIGR02629 139 HTDAATRRQAVEHNLECIEIGKALGSKALTVW 170 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEE
Confidence 765 777777777665 5566653 4444
No 118
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=47.77 E-value=42 Score=33.39 Aligned_cols=70 Identities=17% Similarity=0.436 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhh--------CCC--------CCchhHHHHHHHHHH----HHHHhCC
Q 017505 119 LQYYNNLINELISYGIQPHVTLHHFDLPQALEDEY--------GGW--------INRTIVKDFTAYADV----CFRQFGD 178 (370)
Q Consensus 119 ~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~--------ggw--------~~~~~~~~f~~ya~~----v~~~~~d 178 (370)
.+.=+++++++++.||+|++--+---.|.-+.+++ +.| +.| .-+.|.+.++. -.+.||
T Consensus 94 ~~Lq~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG- 171 (333)
T PF05089_consen 94 AELQKKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG- 171 (333)
T ss_dssp HHHHHHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-
Confidence 45567999999999999999988777898887765 223 223 23567776655 456677
Q ss_pred CceeEE--EecCCc
Q 017505 179 RVSYWT--TVNEPN 190 (370)
Q Consensus 179 ~V~~w~--t~NEp~ 190 (370)
.-.++. +|||-.
T Consensus 172 ~~~~Y~~D~FnE~~ 185 (333)
T PF05089_consen 172 TDHIYAADPFNEGG 185 (333)
T ss_dssp --SEEE--TTTTS-
T ss_pred CCceeCCCccCCCC
Confidence 344443 788743
No 119
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=46.48 E-value=1.3e+02 Score=29.39 Aligned_cols=108 Identities=17% Similarity=0.267 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCC--CceeecccccccccC--CCC--CCChhhhHHHHHHHHHHHHcCCeeEEeccCC---CCcHhHHhh-
Q 017505 83 KEDVKLMADTGL--DAYRFSISWSRLIPN--GRG--PVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALEDE- 152 (370)
Q Consensus 83 ~eDi~l~~~lG~--~~~R~si~Wsri~P~--g~g--~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~---~~P~wl~~~- 152 (370)
.+-++.+++.|+ +++=+++.|...... .-| .+|++-+---+++|+.|++.|++.++.++-+ +.|..-+.+
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~ 106 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHh
Confidence 344555666564 455555567543321 012 2344445556789999999999998887643 334321100
Q ss_pred --h-------------------C---CCCCchhHHHHHHHHHHHHHHhCCCceeEEEecCCccc
Q 017505 153 --Y-------------------G---GWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (370)
Q Consensus 153 --~-------------------g---gw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~~ 192 (370)
| + -++||+..+.|.+..+.+ ...| ---+|.=+|||...
T Consensus 107 ~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~G-vdg~w~D~~Ep~~~ 168 (317)
T cd06598 107 AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQG-VTGWWGDLGEPEVH 168 (317)
T ss_pred CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCC-ccEEEecCCCcccc
Confidence 0 1 256888888887777665 2232 23457899999754
No 120
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=46.35 E-value=1.6e+02 Score=28.78 Aligned_cols=108 Identities=15% Similarity=0.133 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCCCc--eeecccccccccCCC--CCCChhhhHHHHHHHHHHHHcCCeeEEeccCCC---CcHhHHhhh--
Q 017505 83 KEDVKLMADTGLDA--YRFSISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVTLHHFD---LPQALEDEY-- 153 (370)
Q Consensus 83 ~eDi~l~~~lG~~~--~R~si~Wsri~P~g~--g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~---~P~wl~~~~-- 153 (370)
.+-++.+++.|+.. +=+.+.|....-... =.+|.+.+---+++|+.|++.|++.++.++-+- .|..-+.+-
T Consensus 32 ~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g 111 (317)
T cd06599 32 LEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAG 111 (317)
T ss_pred HHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCC
Confidence 34445556666533 333334543211000 123444444466899999999999988665332 222111000
Q ss_pred -----------------CC------CCCchhHHHHHHHHHHHHHHhCCCceeEEEecCCcc
Q 017505 154 -----------------GG------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (370)
Q Consensus 154 -----------------gg------w~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~ 191 (370)
+| ++||+..+.|.+..+......| -.-+|+=+|||.+
T Consensus 112 ~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G-vdg~w~D~~E~~~ 171 (317)
T cd06599 112 AFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLG-IDSTWNDNNEYEI 171 (317)
T ss_pred cEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCC-CcEEEecCCCCcc
Confidence 01 4678888888776655554443 2356788999974
No 121
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=46.28 E-value=1.4e+02 Score=29.14 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=49.8
Q ss_pred CChhhhHHHHHHHHHHHHcCCeeEEeccCCC-----CcHhHHhh------------------------hCCCCCchhHHH
Q 017505 114 VNPKGLQYYNNLINELISYGIQPHVTLHHFD-----LPQALEDE------------------------YGGWINRTIVKD 164 (370)
Q Consensus 114 ~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~-----~P~wl~~~------------------------~ggw~~~~~~~~ 164 (370)
+|.+.+--..++|+.|++.|++.++.++-+= .|...+.. +--|+||+.++.
T Consensus 58 ~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~w 137 (317)
T cd06600 58 WDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREW 137 (317)
T ss_pred echhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHH
Confidence 4444455567899999999999887764321 12221110 012678888888
Q ss_pred HHHHHHHHHHHhCCCceeEEEecCCccc
Q 017505 165 FTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (370)
Q Consensus 165 f~~ya~~v~~~~~d~V~~w~t~NEp~~~ 192 (370)
|.+..+.+....| -.-+|+=+|||..+
T Consensus 138 w~~~~~~~~~~~g-vdg~w~D~~Ep~~~ 164 (317)
T cd06600 138 WAGLFSEWLNSQG-VDGIWLDMNEPSDF 164 (317)
T ss_pred HHHHHHHHhhcCC-CceEEeeCCCCccH
Confidence 8887777665444 24577899999743
No 122
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=46.13 E-value=78 Score=31.61 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=50.3
Q ss_pred HHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHH
Q 017505 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDF 165 (370)
Q Consensus 86 i~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f 165 (370)
|++|.+.|++.+=+|+ +.|++ -+...++.+.++++.+.+.|++++|+.. |+-|.+ -||.- +.++.|
T Consensus 22 i~~~~~~Gf~~IFtsl----~~~~~---~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~S~-~~l~~f 87 (360)
T COG3589 22 IDRMHKYGFKRIFTSL----LIPEE---DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNISL-DNLSRF 87 (360)
T ss_pred HHHHHHcCccceeeec----ccCCc---hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCCCh-HHHHHH
Confidence 6788888988776665 34442 2345799999999999999999999995 887754 35443 345666
Q ss_pred HHH
Q 017505 166 TAY 168 (370)
Q Consensus 166 ~~y 168 (370)
.+.
T Consensus 88 ~e~ 90 (360)
T COG3589 88 QEL 90 (360)
T ss_pred HHh
Confidence 665
No 123
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=46.10 E-value=1.3e+02 Score=26.61 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCce
Q 017505 160 TIVKDFTAYADVCFRQFGDRVS 181 (370)
Q Consensus 160 ~~~~~f~~ya~~v~~~~~d~V~ 181 (370)
...+...+|++.|-++.|-++-
T Consensus 100 ~~~~~~~~f~~~v~~~~G~~~~ 121 (184)
T cd06525 100 ELNDYVLRFIEEFEKLSGLKVG 121 (184)
T ss_pred HHHHHHHHHHHHHHHHHCCCeE
Confidence 3445666667766666555443
No 124
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=45.28 E-value=1.3e+02 Score=30.65 Aligned_cols=139 Identities=18% Similarity=0.224 Sum_probs=78.2
Q ss_pred cHHHHHHHHhcCCCceeecccccccccC---CCCC--CChhhh-HHHHHHHHHHHHcCCeeEEecc----------CCCC
Q 017505 82 YKEDVKLMADTGLDAYRFSISWSRLIPN---GRGP--VNPKGL-QYYNNLINELISYGIQPHVTLH----------HFDL 145 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~Wsri~P~---g~g~--~n~~~~-~~y~~~i~~l~~~Gi~p~vtL~----------H~~~ 145 (370)
..+-++.++++|++.|-+.=-|..---. +-|. +|++.+ +-...+++.+++.||++=+=+- .-..
T Consensus 60 i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~h 139 (394)
T PF02065_consen 60 ILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLYREH 139 (394)
T ss_dssp HHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSSCHCCSS
T ss_pred HHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccchhHHHHhC
Confidence 4556788899999998888889753111 0022 233222 1277999999999999754331 1246
Q ss_pred cHhHHhhhC-----C-------CCCchhHHHHHHHHHHHHHHhCCCceeE-EEecCCccccccccccCCCCCCCCCCccc
Q 017505 146 PQALEDEYG-----G-------WINRTIVKDFTAYADVCFRQFGDRVSYW-TTVNEPNAFANLGYDYGIAPPQRCSSINH 212 (370)
Q Consensus 146 P~wl~~~~g-----g-------w~~~~~~~~f~~ya~~v~~~~~d~V~~w-~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~ 212 (370)
|.|+...-+ | ..+|++.+...+-...+++.+| |.|. .=+|..-. .++...
T Consensus 140 Pdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g--idYiK~D~n~~~~-----------~~~~~~---- 202 (394)
T PF02065_consen 140 PDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG--IDYIKWDFNRDIT-----------EAGSPS---- 202 (394)
T ss_dssp BGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT---SEEEEE-TS-TT-----------S-SSTT----
T ss_pred ccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC--CCEEEeccccCCC-----------CCCCCC----
Confidence 888753211 1 3567788888887888888886 3333 23443211 111110
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccC
Q 017505 213 CSRGNSSTEPYITVHHVLLAHASVARLYRKKYQD 246 (370)
Q Consensus 213 ~~~~~~~~~~~qa~hnlllAHA~Av~~~re~~~~ 246 (370)
.. ...|...++--...+.+|+.+|+
T Consensus 203 -------~~--~~~~~~~~~~y~l~~~L~~~~P~ 227 (394)
T PF02065_consen 203 -------LP--EGYHRYVLGLYRLLDRLRARFPD 227 (394)
T ss_dssp -------S---GHHHHHHHHHHHHHHHHHHHTTT
T ss_pred -------ch--HHHHHHHHHHHHHHHHHHHhCCC
Confidence 01 45666666666677888887774
No 125
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=45.02 E-value=60 Score=30.42 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=44.3
Q ss_pred ecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhC
Q 017505 99 FSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFG 177 (370)
Q Consensus 99 ~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~ 177 (370)
+.+.|..+.++|.-.... .......+++.++++|+++++++..+....... -..+++..+.|++=+-..+++|+
T Consensus 26 v~~~f~~i~~~G~l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 26 INLAFANPDANGTLNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEEECCCCeEEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 344566666554222211 123567889999999999999997655432211 12456666777666655666654
No 126
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=44.71 E-value=77 Score=30.80 Aligned_cols=62 Identities=19% Similarity=0.268 Sum_probs=45.4
Q ss_pred cHHHHHHHHhcCCCceeecc----cccccccC-C--CCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHH
Q 017505 82 YKEDVKLMADTGLDAYRFSI----SWSRLIPN-G--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALE 150 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si----~Wsri~P~-g--~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~ 150 (370)
.++-|++|+.+|+|.+-+=+ .+.. .|. + +|.+.++. ++++++.++++||+++.-+. +|..+.
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~e---i~ei~~yA~~~gI~vIPeid---~pGH~~ 87 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEE---IREIDDYAAELGIEVIPLIQ---TLGHLE 87 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHH---HHHHHHHHHHcCCEEEecCC---CHHHHH
Confidence 67889999999999988744 3322 233 1 46677554 77999999999999998874 565543
No 127
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=44.51 E-value=42 Score=37.15 Aligned_cols=87 Identities=13% Similarity=0.180 Sum_probs=54.8
Q ss_pred HHHHHHhcCCCceeeccccc---------------ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccC--CCC--
Q 017505 85 DVKLMADTGLDAYRFSISWS---------------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHH--FDL-- 145 (370)
Q Consensus 85 Di~l~~~lG~~~~R~si~Ws---------------ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H--~~~-- 145 (370)
-++.+|+||++++-+.=-.. .+.|. -|. .+-++++|++|.++||.+++.+-+ +.-
T Consensus 256 ~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~-~Gt-----p~dlk~LVd~aH~~GI~VilDvV~nH~~~~~ 329 (758)
T PLN02447 256 VLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSR-SGT-----PEDLKYLIDKAHSLGLRVLMDVVHSHASKNT 329 (758)
T ss_pred HHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccc-cCC-----HHHHHHHHHHHHHCCCEEEEEeccccccccc
Confidence 48999999999998663221 11111 122 244889999999999999998653 221
Q ss_pred -----------cHhHHhhhCC----C-------CCchhHHHHHHHHHHHHHHhC
Q 017505 146 -----------PQALEDEYGG----W-------INRTIVKDFTAYADVCFRQFG 177 (370)
Q Consensus 146 -----------P~wl~~~~gg----w-------~~~~~~~~f~~ya~~v~~~~~ 177 (370)
+.|+.....| | .++++.+.+.+=++.-++.|+
T Consensus 330 ~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 330 LDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred cccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1222210011 2 245677788888888888776
No 128
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=44.23 E-value=46 Score=37.36 Aligned_cols=56 Identities=23% Similarity=0.320 Sum_probs=41.6
Q ss_pred ccCcHHHHHHHHhcCCCceeecc---------------cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEec
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSI---------------SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si---------------~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (370)
+....+-+.-+++||++++=+|= ++.+|.|. -| +.+=+++++++++++||.+|+.+
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~-lG-----t~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPE-LG-----GEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCC-CC-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 44567788899999999986553 34445444 23 24558999999999999999985
No 129
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=44.09 E-value=78 Score=34.02 Aligned_cols=93 Identities=12% Similarity=0.079 Sum_probs=58.8
Q ss_pred cHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHh----HHh------
Q 017505 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQA----LED------ 151 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~w----l~~------ 151 (370)
.++|+++.++.|++.+|+..+-+.+ +-....++.++++|....+++..-..|.+ +.+
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV-------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELE 164 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 4567889999999999998766554 23456677888888888777754233421 111
Q ss_pred hh----------CCCCCchhHHHHHHHHHHHHHHhCCCceeEEEecCCcc
Q 017505 152 EY----------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (370)
Q Consensus 152 ~~----------ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~ 191 (370)
+. .|-.. +....+.++.+-++++ .--...+-|-..+
T Consensus 165 ~~Gad~I~i~Dt~G~~~---P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 210 (592)
T PRK09282 165 EMGCDSICIKDMAGLLT---PYAAYELVKALKEEVD-LPVQLHSHCTSGL 210 (592)
T ss_pred HcCCCEEEECCcCCCcC---HHHHHHHHHHHHHhCC-CeEEEEEcCCCCc
Confidence 00 34444 3456667777777775 3345567777665
No 130
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=43.92 E-value=1.4e+02 Score=29.36 Aligned_cols=79 Identities=14% Similarity=0.189 Sum_probs=51.2
Q ss_pred ChhhhHHHHHHHHHHHHcCCeeEEeccCCC-----CcHhHHhh-------------h--------C---CCCCchhHHHH
Q 017505 115 NPKGLQYYNNLINELISYGIQPHVTLHHFD-----LPQALEDE-------------Y--------G---GWINRTIVKDF 165 (370)
Q Consensus 115 n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~-----~P~wl~~~-------------~--------g---gw~~~~~~~~f 165 (370)
|++-+---+.+|+.|++.|++.++.++-+- .|..-+.+ | + -++||+.++.|
T Consensus 59 d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww 138 (339)
T cd06603 59 DKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWW 138 (339)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHH
Confidence 333333356799999999999888776442 22221111 0 1 26788999999
Q ss_pred HHHHHHHHHHhC-CCceeEEEecCCcccc
Q 017505 166 TAYADVCFRQFG-DRVSYWTTVNEPNAFA 193 (370)
Q Consensus 166 ~~ya~~v~~~~~-d~V~~w~t~NEp~~~~ 193 (370)
.+..+.+....+ +-+-.|+=+|||.++.
T Consensus 139 ~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 139 ASLFSYDKYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred HHHHHHHhhcccCCCceEEeccCCccccC
Confidence 888887765432 3457889999998753
No 131
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=42.51 E-value=38 Score=39.54 Aligned_cols=58 Identities=19% Similarity=0.313 Sum_probs=39.1
Q ss_pred ccCcH--HHHHHHHhcCCCceeeccccc------------------------ccccCCCCCCChhhhHHHHHHHHHHHHc
Q 017505 79 YHKYK--EDVKLMADTGLDAYRFSISWS------------------------RLIPNGRGPVNPKGLQYYNNLINELISY 132 (370)
Q Consensus 79 y~~~~--eDi~l~~~lG~~~~R~si~Ws------------------------ri~P~g~g~~n~~~~~~y~~~i~~l~~~ 132 (370)
|.... +.|+-+|+||++++=+.=-.. .+.|. =|. ...+=++++|++|.++
T Consensus 184 ~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~-yg~---~~~~efk~lV~~~H~~ 259 (1221)
T PRK14510 184 FAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPR-LAP---GGEEEFAQAIKEAQSA 259 (1221)
T ss_pred HhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChh-hcc---CcHHHHHHHHHHHHHC
Confidence 44444 668899999999997652111 11111 010 1355689999999999
Q ss_pred CCeeEEec
Q 017505 133 GIQPHVTL 140 (370)
Q Consensus 133 Gi~p~vtL 140 (370)
||++|+..
T Consensus 260 GI~VILDv 267 (1221)
T PRK14510 260 GIAVILDV 267 (1221)
T ss_pred CCEEEEEE
Confidence 99999984
No 132
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=42.50 E-value=82 Score=33.15 Aligned_cols=93 Identities=10% Similarity=0.105 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEec----cCCCCcHhHHhh------
Q 017505 83 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL----HHFDLPQALEDE------ 152 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL----~H~~~P~wl~~~------ 152 (370)
+.|++...+.|++.+|+....+.+ +-.+..++.+++.|.....++ .+-..|..+.+.
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~lndv-------------~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~ 166 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALNDP-------------RNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLD 166 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecCChH-------------HHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 347899999999999999876655 234455666666666553333 222223222210
Q ss_pred ----------hCCCCCchhHHHHHHHHHHHHHHhC-CCceeEEEecCCcc
Q 017505 153 ----------YGGWINRTIVKDFTAYADVCFRQFG-DRVSYWTTVNEPNA 191 (370)
Q Consensus 153 ----------~ggw~~~~~~~~f~~ya~~v~~~~~-d~V~~w~t~NEp~~ 191 (370)
-.|-.. +....+.++.+-++++ +..-...+-|-..+
T Consensus 167 ~Gad~I~IkDtaGll~---P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~Gl 213 (499)
T PRK12330 167 MGADSICIKDMAALLK---PQPAYDIVKGIKEACGEDTRINLHCHSTTGV 213 (499)
T ss_pred cCCCEEEeCCCccCCC---HHHHHHHHHHHHHhCCCCCeEEEEeCCCCCc
Confidence 034444 4466677777778886 43445667777765
No 133
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=41.70 E-value=3.5e+02 Score=26.51 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=33.3
Q ss_pred ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCC
Q 017505 105 RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD 144 (370)
Q Consensus 105 ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~ 144 (370)
+..|...+-++.+-+..++++.+.++++|-..++=|+|-+
T Consensus 62 ~~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~G 101 (336)
T cd02932 62 RITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAHAG 101 (336)
T ss_pred CCCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccCCC
Confidence 4445545667888999999999999999999999999953
No 134
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=41.69 E-value=84 Score=31.37 Aligned_cols=82 Identities=21% Similarity=0.269 Sum_probs=60.8
Q ss_pred CccccCcHHHHHHHHhcCCCceeecccccccccCC----CC--CCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhH
Q 017505 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNG----RG--PVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQAL 149 (370)
Q Consensus 76 ~d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g----~g--~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl 149 (370)
++.+-.-++-++.++++|++-+-+|++ -+-|.- -| .+| +++-.++.+.+.+.||..+++ |.|+
T Consensus 197 Tng~~L~~~lv~eLeeAGLdRiNlSv~--aLDpk~Ak~L~G~~dYd---v~kvle~aE~i~~a~idvlIa------Pv~l 265 (414)
T COG2100 197 TNGVLLSKKLVDELEEAGLDRINLSVD--ALDPKLAKMLAGRKDYD---VKKVLEVAEYIANAGIDVLIA------PVWL 265 (414)
T ss_pred eCceeccHHHHHHHHHhCCceEEeecc--cCCHHHHHHhcCccccC---HHHHHHHHHHHHhCCCCEEEe------eeec
Confidence 444556677889999999997777763 344431 23 456 888999999999999999875 7887
Q ss_pred HhhhCCCCCchhHHHHHHHHHHHH
Q 017505 150 EDEYGGWINRTIVKDFTAYADVCF 173 (370)
Q Consensus 150 ~~~~ggw~~~~~~~~f~~ya~~v~ 173 (370)
.| .|.+-...+.+||+.+-
T Consensus 266 ----PG-~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 266 ----PG-VNDDEMPKIIEWAREIG 284 (414)
T ss_pred ----CC-cChHHHHHHHHHHHHhC
Confidence 23 56666788999988764
No 135
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=41.57 E-value=80 Score=31.31 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=36.5
Q ss_pred HHHHHhcCCCceeecccccc---cccCCCCCCCh----hhhHHHHHHHHHHHHcCCeeEEeccCCC
Q 017505 86 VKLMADTGLDAYRFSISWSR---LIPNGRGPVNP----KGLQYYNNLINELISYGIQPHVTLHHFD 144 (370)
Q Consensus 86 i~l~~~lG~~~~R~si~Wsr---i~P~g~g~~n~----~~~~~y~~~i~~l~~~Gi~p~vtL~H~~ 144 (370)
++++|++|++-+=+.-.-.. +.|+.-..+|- -.-+...++.++|+++||++-+-+.++|
T Consensus 97 ~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~d 162 (346)
T PF01120_consen 97 AKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWD 162 (346)
T ss_dssp HHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSS
T ss_pred HHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchH
Confidence 79999999998875432221 22331111221 2357889999999999999999888765
No 136
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=41.52 E-value=1.4e+02 Score=29.62 Aligned_cols=93 Identities=17% Similarity=0.186 Sum_probs=57.8
Q ss_pred HHHHHHHHhcCCCceeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeE-EeccCCCCcHhHHhhhCCCCCc
Q 017505 83 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWINR 159 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~Ws-ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~wl~~~~ggw~~~ 159 (370)
++.++.++++|++.+-+++ +-+ ++... -|... ..+-..+.|+.+++.|+..+ ++|. +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~-lgR~~--~~~~~~~ai~~lr~~g~~~v~iDli-~GlPg------------ 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKF-LGRIH--SQKQIIKAIENAKKAGFENISIDLI-YDTPL------------ 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCC--CHHHHHHHHHHHHHcCCCEEEEEee-cCCCC------------
Confidence 6899999999999777777 443 23322 24322 14567789999999999854 6665 66663
Q ss_pred hhHHHHHHHHHHHHHHhCCCceeEEEecCCcc
Q 017505 160 TIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (370)
Q Consensus 160 ~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~ 191 (370)
++.+.|.+-.+.+.+-=-++|..+..-=||+.
T Consensus 162 qt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT 193 (350)
T PRK08446 162 DNKKLLKEELKLAKELPINHLSAYSLTIEENT 193 (350)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeccceecCCC
Confidence 23455655555555432345555544445543
No 137
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=41.19 E-value=49 Score=32.81 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=50.4
Q ss_pred HHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCc
Q 017505 85 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (370)
Q Consensus 85 Di~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 146 (370)
+.+.+|++|.+++.|=+=|. |+++-.+|..-.++.+++.++|++.||--++=+..++.+
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~ 170 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDER 170 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCc
Confidence 56889999999999988886 565566888889999999999999999999988776543
No 138
>PLN02389 biotin synthase
Probab=41.15 E-value=73 Score=32.22 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=43.0
Q ss_pred CcHHHHHHHHhcCCCceeecccccc-cccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEecc
Q 017505 81 KYKEDVKLMADTGLDAYRFSISWSR-LIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (370)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~Wsr-i~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (370)
.-+|.++.||++|++.|-.+++=++ ++|.-...- .++..-+.++.+++.||++..++.
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~---s~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTR---SYDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCC---CHHHHHHHHHHHHHcCCeEeEEEE
Confidence 5689999999999999999885222 444411111 367788999999999999876653
No 139
>PRK12568 glycogen branching enzyme; Provisional
Probab=41.14 E-value=37 Score=37.37 Aligned_cols=93 Identities=14% Similarity=0.225 Sum_probs=56.6
Q ss_pred ccCcHHH-HHHHHhcCCCceeec--------cccc-------ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEecc-
Q 017505 79 YHKYKED-VKLMADTGLDAYRFS--------ISWS-------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH- 141 (370)
Q Consensus 79 y~~~~eD-i~l~~~lG~~~~R~s--------i~Ws-------ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~- 141 (370)
|....+. |+-+|+||++++=+. -+|- .+.|. -|. .+=++++|++|.++||++|+.+-
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~-~G~-----~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTAR-HGS-----PDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcc-cCC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 3344444 688999999998654 2342 11111 132 34588999999999999999853
Q ss_pred -CCCCcH---------hHHh----h---hCCC-------CCchhHHHHHHHHHHHHHHhC
Q 017505 142 -HFDLPQ---------ALED----E---YGGW-------INRTIVKDFTAYADVCFRQFG 177 (370)
Q Consensus 142 -H~~~P~---------wl~~----~---~ggw-------~~~~~~~~f~~ya~~v~~~~~ 177 (370)
|+.--. .+.. . +..| .++++.+.+.+=++.-+++|+
T Consensus 342 nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 342 AHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred ccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 543110 0000 0 0123 356777788887787777776
No 140
>PRK07094 biotin synthase; Provisional
Probab=41.08 E-value=39 Score=32.87 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=42.3
Q ss_pred CcHHHHHHHHhcCCCceeeccc-c-cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCc
Q 017505 81 KYKEDVKLMADTGLDAYRFSIS-W-SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (370)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~-W-sri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 146 (370)
.-+|+++.|+++|++.+-++++ - .++...=....+ ++-+.+.++.+++.||.+..++. +++|
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s---~~~~~~~i~~l~~~Gi~v~~~~i-iGlp 190 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMS---FENRIACLKDLKELGYEVGSGFM-VGLP 190 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCeecceEE-EECC
Confidence 4589999999999999998884 3 233333111222 56688899999999998655543 3444
No 141
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=40.97 E-value=1.5e+02 Score=30.80 Aligned_cols=94 Identities=19% Similarity=0.415 Sum_probs=59.3
Q ss_pred cHHH-HHHHHhcCCCceeec-------ccccc-cccCC--CC---------CCChhhhHHHHHHHHHHHHcCCeeEEecc
Q 017505 82 YKED-VKLMADTGLDAYRFS-------ISWSR-LIPNG--RG---------PVNPKGLQYYNNLINELISYGIQPHVTLH 141 (370)
Q Consensus 82 ~~eD-i~l~~~lG~~~~R~s-------i~Wsr-i~P~g--~g---------~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (370)
++.| ++++|+|-+...|+. -.|.. |=|.. +- +-|+=| .+++++.|+..|.+|++.+.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~G---t~EF~~~~e~iGaep~~avN 126 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFG---THEFMDWCELIGAEPYIAVN 126 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccccc---HHHHHHHHHHhCCceEEEEe
Confidence 4555 688999999998852 24543 33331 00 112223 46899999999999999986
Q ss_pred CCCCcHhHHhhhCCCCCchhHHHHHHHHHH--------HHHHhCC----CceeEEEecCCc
Q 017505 142 HFDLPQALEDEYGGWINRTIVKDFTAYADV--------CFRQFGD----RVSYWTTVNEPN 190 (370)
Q Consensus 142 H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~--------v~~~~~d----~V~~w~t~NEp~ 190 (370)
= |. ...+....|.+||.. .=+..|- .||+|.+=||-.
T Consensus 127 ~-----------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~ 175 (501)
T COG3534 127 L-----------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMD 175 (501)
T ss_pred c-----------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccC
Confidence 2 11 333456677777632 2333332 599999999973
No 142
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=40.43 E-value=1.2e+02 Score=30.27 Aligned_cols=95 Identities=18% Similarity=0.300 Sum_probs=57.0
Q ss_pred cHHHHHHHHhcCCCceeecc-cc-cccccCCCCC-CChhhhHHHHHHHHHHHHcCCeeE-EeccCCCCcHhHHhhhCCCC
Q 017505 82 YKEDVKLMADTGLDAYRFSI-SW-SRLIPNGRGP-VNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWI 157 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~W-sri~P~g~g~-~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~wl~~~~ggw~ 157 (370)
-+|.+++|+++|++.+-+++ += .++... -|. .+ .+-..+.|+.+++.|+..+ +.+. +++|..
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~-l~r~~~---~~~~~~~i~~l~~~g~~~v~~dli-~GlPgq--------- 164 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKK-IGRTHN---EEDVYEAIANAKKAGFDNISIDLI-YALPGQ--------- 164 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCCC---HHHHHHHHHHHHHcCCCcEEEeee-cCCCCC---------
Confidence 47889999999999777776 22 233322 122 23 4567799999999999743 4443 566631
Q ss_pred CchhHHHHHHHHHHHHHHhCCCceeEEEecCCcccc
Q 017505 158 NRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFA 193 (370)
Q Consensus 158 ~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~~~ 193 (370)
+.+.|.+=.+.+.+.=-+.|..+...-+|+...
T Consensus 165 ---t~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~ 197 (377)
T PRK08599 165 ---TIEDFKESLAKALALDIPHYSAYSLILEPKTVF 197 (377)
T ss_pred ---CHHHHHHHHHHHHccCCCEEeeeceeecCCChh
Confidence 234555555555443234555554445676543
No 143
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=40.27 E-value=51 Score=34.05 Aligned_cols=59 Identities=24% Similarity=0.411 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCCceeecc-cccc-cccC-CCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCc
Q 017505 83 KEDVKLMADTGLDAYRFSI-SWSR-LIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~Wsr-i~P~-g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 146 (370)
+|.+++|+++|++.+-+++ +-+. +... ++| .+ .+.+.+.++.++++||.+.+++. +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~-~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKG-LT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCC-CC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 6778999999999888888 4432 2211 222 23 55688999999999999888775 3555
No 144
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=40.24 E-value=66 Score=31.09 Aligned_cols=60 Identities=25% Similarity=0.347 Sum_probs=47.7
Q ss_pred CcHHHHHHHHhcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEec
Q 017505 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (370)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~Wsri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (370)
--.+|++...++|++.+-+.++=|...-.. -+.--++.++.+.++++.++++|+++.+++
T Consensus 75 ~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 75 ANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 357999999999999999888665543321 233346789999999999999999999888
No 145
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=40.23 E-value=48 Score=32.78 Aligned_cols=58 Identities=17% Similarity=0.305 Sum_probs=49.4
Q ss_pred HHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCc
Q 017505 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (370)
Q Consensus 86 i~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 146 (370)
.+.+|++|.+++.|=+=|. |+++..+|..-.++.+++.++|++.||--++=+..++.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 5789999999999988886 665566888889999999999999999988887765543
No 146
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=39.74 E-value=59 Score=36.31 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=42.8
Q ss_pred ccCcHHHHHHHHhcCCCceeecccc---------------cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEec--c
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSISW---------------SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--H 141 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~W---------------sri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL--~ 141 (370)
+....+-++-+++||++++=+|=-+ .+|.|. -| +.+=+++++++++++||.+|+.+ .
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~-lG-----t~edf~~Lv~aah~~Gm~vIlDiVpN 88 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPE-LG-----GEEGLRRLSEAARARGLGLIVDIVPN 88 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCC-CC-----CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 3446778899999999999766433 233333 12 34558999999999999999985 4
Q ss_pred CCC
Q 017505 142 HFD 144 (370)
Q Consensus 142 H~~ 144 (370)
|..
T Consensus 89 H~a 91 (825)
T TIGR02401 89 HMA 91 (825)
T ss_pred ccc
Confidence 543
No 147
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=39.23 E-value=1.3e+02 Score=30.54 Aligned_cols=105 Identities=17% Similarity=0.235 Sum_probs=64.0
Q ss_pred cHHHHHHHHhcCCCceeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCe-eEEeccCCCCcHhHHhhhCCCCC
Q 017505 82 YKEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWIN 158 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~Ws-ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~-p~vtL~H~~~P~wl~~~~ggw~~ 158 (370)
-++.++.|+++|++.+-+++ +-+ ++... -|... ..+-..+.++.+++.|+. +.++|. +++|.
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~-l~R~~--~~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg----------- 178 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLAL-CGRSH--RVKDIFAAVDLIHQAGIENFSLDLI-SGLPH----------- 178 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHH-hCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 46889999999999666666 222 22222 12221 134466889999999998 567776 67773
Q ss_pred chhHHHHHHHHHHHHHHhCCCceeEEEecCCccccccccccCCC
Q 017505 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIA 202 (370)
Q Consensus 159 ~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~~~~~gy~~g~~ 202 (370)
++.+.+.+=++.+.+-=-++|..+...-||+......+..|.+
T Consensus 179 -qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 179 -QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred -CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 1234444444544443346788777777887654444444433
No 148
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=38.09 E-value=1.2e+02 Score=33.76 Aligned_cols=102 Identities=24% Similarity=0.416 Sum_probs=63.9
Q ss_pred hcCCCceeeccc-ccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCC---CCcHhHH--hh-h----------
Q 017505 91 DTGLDAYRFSIS-WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALE--DE-Y---------- 153 (370)
Q Consensus 91 ~lG~~~~R~si~-Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~---~~P~wl~--~~-~---------- 153 (370)
++=++++++++. |.+ .-+.=.+|+.-+---+.+|+.+++.||+.++.+... |.|..-+ ++ |
T Consensus 293 ~IP~d~~~lD~~~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~ 370 (772)
T COG1501 293 DIPLDVFVLDIDFWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIY 370 (772)
T ss_pred cCcceEEEEeehhhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEe
Confidence 355788999995 886 111123454445556699999999999999887642 3333211 11 0
Q ss_pred --------C---CCCCchhHHHHHHHHHHHHHHhCCCceeEEEecCCcccccc
Q 017505 154 --------G---GWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANL 195 (370)
Q Consensus 154 --------g---gw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~~~~~ 195 (370)
+ -++||+.++.|.+....-..-+| -.-+|.=+|||.+....
T Consensus 371 ~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 371 QADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDGD 422 (772)
T ss_pred eecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCcccccc
Confidence 1 16788888888873222222332 35788999999986543
No 149
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=38.04 E-value=2e+02 Score=24.82 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=39.8
Q ss_pred cCcHHHHHHHHhcCCCceeeccc-ccc-cccCCCCCCChhhhHHHHHHHHHHHHcC-CeeEEec
Q 017505 80 HKYKEDVKLMADTGLDAYRFSIS-WSR-LIPNGRGPVNPKGLQYYNNLINELISYG-IQPHVTL 140 (370)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~-Wsr-i~P~g~g~~n~~~~~~y~~~i~~l~~~G-i~p~vtL 140 (370)
..-++.++.|++.|++.+.+|+. ++. +...-....+ ++.+.+.|+.++++| +.+.+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 34478899999999999999985 643 2211011122 577889999999999 6555444
No 150
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=37.94 E-value=88 Score=26.74 Aligned_cols=57 Identities=11% Similarity=0.173 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCC
Q 017505 119 LQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDR 179 (370)
Q Consensus 119 ~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~ 179 (370)
.+=+.-+++.|++.|++|++.+.= --+.|. +|-| .+++..+.|.+=.+..++++|=.
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wy--dytG-~~~~~r~~~y~kI~~~~~~~gf~ 91 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQP-VNGKWY--DYTG-LSKEMRQEYYKKIKYQLKSQGFN 91 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-----HHHH--HHTT---HHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHHHcCCceEEEecC-CcHHHH--HHhC-CCHHHHHHHHHHHHHHHHHCCCE
Confidence 445788999999999999999841 013453 3566 35566777777778888888753
No 151
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=37.60 E-value=6e+02 Score=28.08 Aligned_cols=161 Identities=19% Similarity=0.181 Sum_probs=89.5
Q ss_pred HHhcCCCceeec---c-cccccccCCCCCCChhhhHHHHHHHHHHHHc-CCeeEEeccCCCC-----cHhHHh----hhC
Q 017505 89 MADTGLDAYRFS---I-SWSRLIPNGRGPVNPKGLQYYNNLINELISY-GIQPHVTLHHFDL-----PQALED----EYG 154 (370)
Q Consensus 89 ~~~lG~~~~R~s---i-~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~-Gi~p~vtL~H~~~-----P~wl~~----~~g 154 (370)
.++-|+-.+=.. + .-.++.|...|-++.+-++.++++++.++++ |-..++=|.|-+- +.|... ..+
T Consensus 440 rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~ 519 (765)
T PRK08255 440 RALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEG 519 (765)
T ss_pred HHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHHHHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccC
Confidence 444455554322 1 2346666656788999999999999999999 6999999999431 112100 002
Q ss_pred CCC--------------C---------chhHHHHHHHHHHHHHHhC-CCceeEEEecCCccccccccccCCC-CCCC--C
Q 017505 155 GWI--------------N---------RTIVKDFTAYADVCFRQFG-DRVSYWTTVNEPNAFANLGYDYGIA-PPQR--C 207 (370)
Q Consensus 155 gw~--------------~---------~~~~~~f~~ya~~v~~~~~-d~V~~w~t~NEp~~~~~~gy~~g~~-~Pg~--~ 207 (370)
||. . .++++.|++=|+.+.+ -| |-|. +..-+||+...| -|-. +
T Consensus 520 ~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~-aGfDgve---------ih~ahGyLl~qFlsp~~N~R 589 (765)
T PRK08255 520 NWPLISASPLPYLPGSQVPREMTRADMDRVRDDFVAAARRAAE-AGFDWLE---------LHCAHGYLLSSFISPLTNQR 589 (765)
T ss_pred CCceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEE---------EecccchHHHHhcCCCCCCC
Confidence 221 0 1256666665555443 34 3222 335567776654 2331 1
Q ss_pred CCcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCCCCcceEEeeeCCccccCCCcHHHHH
Q 017505 208 SSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLTNSTEDAI 272 (370)
Q Consensus 208 ~~~~~~~~~~~~~~~~qa~hnlllAHA~Av~~~re~~~~~~~~kIG~~~~~~~~yP~s~~p~D~~ 272 (370)
.+. .+- .+-|-+.--.++++.+|+..+. +-.||+-++.....+...+++|..
T Consensus 590 tD~----yGG-------slenR~r~~~eiv~~ir~~~~~--~~~v~~ri~~~~~~~~g~~~~~~~ 641 (765)
T PRK08255 590 TDE----YGG-------SLENRLRYPLEVFRAVRAVWPA--EKPMSVRISAHDWVEGGNTPDDAV 641 (765)
T ss_pred CCC----CCC-------CHHHHhHHHHHHHHHHHHhcCC--CCeeEEEEccccccCCCCCHHHHH
Confidence 111 111 2345555566788888886532 346888887654444444566643
No 152
>PRK14706 glycogen branching enzyme; Provisional
Probab=37.59 E-value=1.6e+02 Score=31.95 Aligned_cols=90 Identities=20% Similarity=0.237 Sum_probs=52.5
Q ss_pred HHHHhcCCCceeecc--------cccccccCCCCCCC--hhhhHHHHHHHHHHHHcCCeeEEec--cCCC----------
Q 017505 87 KLMADTGLDAYRFSI--------SWSRLIPNGRGPVN--PKGLQYYNNLINELISYGIQPHVTL--HHFD---------- 144 (370)
Q Consensus 87 ~l~~~lG~~~~R~si--------~Wsri~P~g~g~~n--~~~~~~y~~~i~~l~~~Gi~p~vtL--~H~~---------- 144 (370)
+-+|+||++++-+.= +|-- .|.+-=.++ .-..+=++++|++|.++||++++.+ .|+.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY-~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~d 253 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGY-QVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFD 253 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCc-CcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccC
Confidence 568999999987541 1210 000000001 0123448899999999999999884 3542
Q ss_pred -CcHh-HHhhhCC----C-------CCchhHHHHHHHHHHHHHHhC
Q 017505 145 -LPQA-LEDEYGG----W-------INRTIVKDFTAYADVCFRQFG 177 (370)
Q Consensus 145 -~P~w-l~~~~gg----w-------~~~~~~~~f~~ya~~v~~~~~ 177 (370)
.|.+ ..+...| | .++++.+.+.+=++.-++.|+
T Consensus 254 g~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 254 GGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 0000011 2 256788888888898888887
No 153
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=37.56 E-value=82 Score=29.40 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=37.9
Q ss_pred CcHHHHHHHHhcCCCceeecccccccccCCC--CCCChhhhHHHHHHHHHHHHcCCeeEEe-ccCCCCc
Q 017505 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGR--GPVNPKGLQYYNNLINELISYGIQPHVT-LHHFDLP 146 (370)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~--g~~n~~~~~~y~~~i~~l~~~Gi~p~vt-L~H~~~P 146 (370)
..++=|++++++|.+.+++...+ + |.+. .+.-....+..+++.+.+.++||...+= +.|++.|
T Consensus 86 ~~~~~i~~a~~lga~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 86 GVAAAIRYARALGNKKINCLVGK--T-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIP 151 (258)
T ss_pred HHHHHHHHHHHhCCCEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCC
Confidence 35667889999999998864322 1 2210 1111223455577777788999987664 3455444
No 154
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=36.69 E-value=91 Score=28.69 Aligned_cols=79 Identities=18% Similarity=0.181 Sum_probs=54.6
Q ss_pred HHHHHH----HHhcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCC
Q 017505 83 KEDVKL----MADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWI 157 (370)
Q Consensus 83 ~eDi~l----~~~lG~~~~R~si~Wsri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~ 157 (370)
.+|++. +++.|++.+|+.++=+...... -+.--++.++...++++.+++.|++..+++-+..
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~------------- 132 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS------------- 132 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-------------
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc-------------
Confidence 455555 4569999999998655533221 2333356788999999999999999987775421
Q ss_pred CchhHHHHHHHHHHHHHH
Q 017505 158 NRTIVKDFTAYADVCFRQ 175 (370)
Q Consensus 158 ~~~~~~~f~~ya~~v~~~ 175 (370)
+-..+++.++++.+.+.
T Consensus 133 -~~~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 133 -RTDPEELLELAEALAEA 149 (237)
T ss_dssp -GSSHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHc
Confidence 12356777888887666
No 155
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=35.39 E-value=2.1e+02 Score=28.44 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=57.8
Q ss_pred cHHHHHHHHhcCCCceeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCe-eEEeccCCCCcHhHHhhhCCCCC
Q 017505 82 YKEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWIN 158 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~Ws-ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~-p~vtL~H~~~P~wl~~~~ggw~~ 158 (370)
-+|.+++|+++|++.+-+++ +-+ ++... -|... ..+-..+.++.+++.|+. +.++|. +++|..
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQS~~~~~L~~-l~R~~--s~~~~~~a~~~l~~~g~~~v~~dli-~GlPgq---------- 172 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQSAAPHVLAV-LDRTH--TPGRAVAAAREARAAGFEHVNLDLI-YGTPGE---------- 172 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCC--CHHHHHHHHHHHHHcCCCcEEEEEe-ccCCCC----------
Confidence 46889999999999666666 333 22222 12221 245577899999999998 666664 556632
Q ss_pred chhHHHHHHHHHHHHHHhCCCceeEEEecCCcccc
Q 017505 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFA 193 (370)
Q Consensus 159 ~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~~~ 193 (370)
+.+.|.+=.+.+.+.=-+.|..+...=||+...
T Consensus 173 --t~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l 205 (375)
T PRK05628 173 --SDDDWRASLDAALEAGVDHVSAYALIVEDGTAL 205 (375)
T ss_pred --CHHHHHHHHHHHHhcCCCEEEeeeeecCCCChH
Confidence 244555555555543335666555445666543
No 156
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=35.30 E-value=1.7e+02 Score=32.59 Aligned_cols=103 Identities=17% Similarity=0.337 Sum_probs=64.8
Q ss_pred HHHHHhcCCC--ceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEecc---CCCCc-----------HhH
Q 017505 86 VKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH---HFDLP-----------QAL 149 (370)
Q Consensus 86 i~l~~~lG~~--~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~---H~~~P-----------~wl 149 (370)
++.++++|+. ..=..|+|-.-.. +=.+|....-...++++.|.++|++.++++. +-+.. .|+
T Consensus 317 v~~~~~agiPld~~~~DiDyMd~yk--DFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v~I 394 (805)
T KOG1065|consen 317 VENYRAAGIPLDVIVIDIDYMDGYK--DFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDVLI 394 (805)
T ss_pred HHHHHHcCCCcceeeeehhhhhccc--ceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhceee
Confidence 5666777776 5555555543221 1235666677789999999999999999987 22222 011
Q ss_pred Hh----------hhCC------CCCchhHHHHHHHHHHHHHHhCCCce---eEEEecCCccccc
Q 017505 150 ED----------EYGG------WINRTIVKDFTAYADVCFRQFGDRVS---YWTTVNEPNAFAN 194 (370)
Q Consensus 150 ~~----------~~gg------w~~~~~~~~f~~ya~~v~~~~~d~V~---~w~t~NEp~~~~~ 194 (370)
.+ -..| ++|+++++ ++...+++|.+.|. +|+-.|||..+..
T Consensus 395 ~~~~g~~~~lg~vwP~~~~fpDftnp~~~~----Ww~~~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 395 KNREGSPKMLGEVWPGSTAFPDFTNPAVVE----WWLDELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred ecccCchhhhcccCCCcccccccCCchHHH----HHHHHHHhhcccCCccceEEECCCcccCCC
Confidence 00 0122 55564444 44445668888775 8999999976554
No 157
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=34.72 E-value=1.1e+02 Score=29.41 Aligned_cols=84 Identities=10% Similarity=0.110 Sum_probs=55.2
Q ss_pred HHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCC----cHhHHhhhCCCCCchh
Q 017505 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL----PQALEDEYGGWINRTI 161 (370)
Q Consensus 86 i~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~----P~wl~~~~ggw~~~~~ 161 (370)
.+.+++-+-+.=.++..|-+|-|+| .+... ...++++.++++|+++++++..++- +.-+.. -..+++.
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g--~~~~~---~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~---~l~~~~~ 87 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADG--TLTGL---PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA---VLSNPEA 87 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCC--CCCCC---CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH---HhcCHHH
Confidence 6677777777777888999998774 33322 2458999999999999999976541 111110 1235556
Q ss_pred HHHHHHHHHHHHHHhC
Q 017505 162 VKDFTAYADVCFRQFG 177 (370)
Q Consensus 162 ~~~f~~ya~~v~~~~~ 177 (370)
.+.|++=+-.++++|+
T Consensus 88 r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 88 RQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 6667666666666665
No 158
>PRK01060 endonuclease IV; Provisional
Probab=34.59 E-value=1.7e+02 Score=27.53 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=37.5
Q ss_pred ccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeE
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH 137 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~ 137 (370)
+.-+++-++.++++|++.+=+.+.-++.... +..+.+- .+++-+.+.++||++.
T Consensus 11 ~~~~~~~l~~~~~~G~d~vEl~~~~p~~~~~--~~~~~~~---~~~lk~~~~~~gl~~~ 64 (281)
T PRK01060 11 AGGLEGAVAEAAEIGANAFMIFTGNPQQWKR--KPLEELN---IEAFKAACEKYGISPE 64 (281)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCCCCCcC--CCCCHHH---HHHHHHHHHHcCCCCC
Confidence 3347889999999999999998765554322 2345333 4455666779999953
No 159
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=34.49 E-value=65 Score=31.17 Aligned_cols=68 Identities=19% Similarity=0.409 Sum_probs=45.7
Q ss_pred cHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCch
Q 017505 82 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRT 160 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~ 160 (370)
.++-+++++++|++.+.+.+= +.=+++.+++|+++++.+.+++| +|.+|--..|.-+...|.-..++|
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~---------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTyPN~mT~E 175 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM---------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTYPNLMTRE 175 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-----------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCSTTEEEE-
T ss_pred HHHHHHHHHHcCCCEEeeCcC---------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccCccHHHHH
Confidence 377789999999999998861 11358899999999999999986 555665556776665443333333
No 160
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=34.23 E-value=2.3e+02 Score=27.45 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=40.1
Q ss_pred cHHHHHHHHhcCCCcee-eccc-c-----cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCc
Q 017505 82 YKEDVKLMADTGLDAYR-FSIS-W-----SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R-~si~-W-----sri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 146 (370)
.+|.++.||++|++.+- .+++ . .++.|. ... .+.+.+.++.+++.||++..++. +++|
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~---~~t---~~~~l~~i~~a~~~Gi~~~s~~i-iG~~ 170 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPN---KLS---SDEWLEVIKTAHRLGIPTTATMM-FGHV 170 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCC---CCC---HHHHHHHHHHHHHcCCCceeeEE-ecCC
Confidence 47889999999999885 2431 2 123333 233 45677999999999999987764 4444
No 161
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=34.16 E-value=1.9e+02 Score=28.70 Aligned_cols=93 Identities=16% Similarity=0.210 Sum_probs=55.8
Q ss_pred cHHHHHHHHhcCCCceeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeE-EeccCCCCcHhHHhhhCCCCC
Q 017505 82 YKEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWIN 158 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~Ws-ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~wl~~~~ggw~~ 158 (370)
-++.++.|+++|++.+-+++ +-+ ++... -|... ..+-+.+.|+.+++.|+.++ +.|. +++|..
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS~~~~~l~~-lgR~~--~~~~~~~ai~~l~~~G~~~v~~dli-~GlPgq---------- 164 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQSFRDDKLLF-LGRQH--SAKNIAPAIETALKSGIENISLDLM-YGLPLQ---------- 164 (360)
T ss_pred CHHHHHHHHHcCCCEEEEecccCChHHHHH-hCCCC--CHHHHHHHHHHHHHcCCCeEEEecc-CCCCCC----------
Confidence 36889999999999666666 233 23322 23321 25668889999999999754 5553 566632
Q ss_pred chhHHHHHHHHHHHHHHhCCCceeEEEecCCc
Q 017505 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (370)
Q Consensus 159 ~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~ 190 (370)
+.+.+.+-.+.+.+.=-+.+..+...=||+
T Consensus 165 --t~~~~~~~l~~~~~l~~~~is~y~l~~~~g 194 (360)
T TIGR00539 165 --TLNSLKEELKLAKELPINHLSAYALSVEPN 194 (360)
T ss_pred --CHHHHHHHHHHHHccCCCEEEeecceEcCC
Confidence 244555555555543224455544444554
No 162
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=34.09 E-value=1.2e+02 Score=28.31 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhC
Q 017505 119 LQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFG 177 (370)
Q Consensus 119 ~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~ 177 (370)
.+...+.|..++++|+++++++.-+.....+ ....+++..+.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 4557788999999999999999754432111 012444555666666666667766
No 163
>PTZ00445 p36-lilke protein; Provisional
Probab=34.07 E-value=73 Score=29.78 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=40.9
Q ss_pred HHHHHHhcCCCceeecccccccccCCCCCCChh---------hhHHHHHHHHHHHHcCCeeEEecc
Q 017505 85 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPK---------GLQYYNNLINELISYGIQPHVTLH 141 (370)
Q Consensus 85 Di~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~---------~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (370)
=++++++.|++.+=+.++=+-|.-...|-.++. +-.-...++.+|+++||.+.|..+
T Consensus 34 ~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 34 FVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 368899999999988877665542211222222 344577899999999999998886
No 164
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=33.77 E-value=1.5e+02 Score=29.44 Aligned_cols=59 Identities=15% Similarity=0.267 Sum_probs=49.5
Q ss_pred HHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCc
Q 017505 85 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (370)
Q Consensus 85 Di~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 146 (370)
+.+.+|++|.+++.|=+=|. |+++..+|..-.++.+++.++|++.||--++=+..+|.+
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~ 169 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDN 169 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 36889999999999988775 444456788889999999999999999999988777654
No 165
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=33.41 E-value=1.1e+02 Score=36.92 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=43.3
Q ss_pred ccCcHHHHHHHHhcCCCceeeccccc---------------ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEec--c
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSISWS---------------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL--H 141 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~Ws---------------ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL--~ 141 (370)
+....+-++-+++||++++=+|=-+. +|.|. -| +.+=+++++++|+++||.+|+.+ .
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~-lG-----~~edf~~Lv~~ah~~Gi~vilDiV~N 830 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPE-IG-----GEEGFERFCAALKAHGLGQLLDIVPN 830 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcc-cC-----CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 44566778899999999996664333 34333 22 34558999999999999999985 4
Q ss_pred CCC
Q 017505 142 HFD 144 (370)
Q Consensus 142 H~~ 144 (370)
|..
T Consensus 831 H~~ 833 (1693)
T PRK14507 831 HMG 833 (1693)
T ss_pred ccC
Confidence 643
No 166
>PRK05660 HemN family oxidoreductase; Provisional
Probab=33.24 E-value=2e+02 Score=28.90 Aligned_cols=94 Identities=14% Similarity=0.210 Sum_probs=60.8
Q ss_pred cHHHHHHHHhcCCCceeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeE-EeccCCCCcHhHHhhhCCCCC
Q 017505 82 YKEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWIN 158 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~Ws-ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~wl~~~~ggw~~ 158 (370)
-++.++.|+++|++.+-+++ +=+ ++... -|... ..+-..+.|+.+++.|+.++ ++|. +++|.
T Consensus 106 ~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~-l~r~~--~~~~~~~ai~~~~~~G~~~v~~dli-~Glpg----------- 170 (378)
T PRK05660 106 EADRFVGYQRAGVNRISIGVQSFSEEKLKR-LGRIH--GPDEAKRAAKLAQGLGLRSFNLDLM-HGLPD----------- 170 (378)
T ss_pred CHHHHHHHHHcCCCEEEeccCcCCHHHHHH-hCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 35899999999999777766 332 22222 12221 24456778999999999874 6664 56663
Q ss_pred chhHHHHHHHHHHHHHHhCCCceeEEEecCCcc
Q 017505 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (370)
Q Consensus 159 ~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~ 191 (370)
++.+.|.+-.+.+.+.=-++|..+...=||+.
T Consensus 171 -qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 171 -QSLEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred -CCHHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 23556666666666644567777776666664
No 167
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=33.01 E-value=1.6e+02 Score=30.26 Aligned_cols=56 Identities=25% Similarity=0.445 Sum_probs=40.7
Q ss_pred cccCcHHHH-----HHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCc
Q 017505 78 GYHKYKEDV-----KLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (370)
Q Consensus 78 ~y~~~~eDi-----~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 146 (370)
.|.+|.+|+ ++..+-|++.||+- -. .|. ..-.+.-|++.++.|-....+++--..|
T Consensus 91 GYrhyaDDvVe~Fv~ka~~nGidvfRiF-------DA----lND--~RNl~~ai~a~kk~G~h~q~~i~YT~sP 151 (472)
T COG5016 91 GYRHYADDVVEKFVEKAAENGIDVFRIF-------DA----LND--VRNLKTAIKAAKKHGAHVQGTISYTTSP 151 (472)
T ss_pred cccCCchHHHHHHHHHHHhcCCcEEEec-------hh----ccc--hhHHHHHHHHHHhcCceeEEEEEeccCC
Confidence 477888884 77789999999863 22 221 4457788999999999999998743334
No 168
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=32.61 E-value=1.5e+02 Score=31.40 Aligned_cols=106 Identities=14% Similarity=0.180 Sum_probs=67.2
Q ss_pred cHHHHHHHHhcCCCceeeccc--ccccccC-CCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCC
Q 017505 82 YKEDVKLMADTGLDAYRFSIS--WSRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWIN 158 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~--Wsri~P~-g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~ 158 (370)
-++.+++|+++|++.+-+++. -.++.-. ++|. + .+-..+.++.++++|+++.+.|. +++|.
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRgh-t---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg----------- 268 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQTIYNDILERTKRGH-T---VRDVVEATRLLRDAGLKVVYHIM-PGLPG----------- 268 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCC-C---HHHHHHHHHHHHHcCCeEEEEee-cCCCC-----------
Confidence 368899999999987777772 3333322 2332 2 44567888999999998777775 56663
Q ss_pred chhHHHHHHHHHHHHH--HhC-CCceeEEEecCCccccccccccCCCCC
Q 017505 159 RTIVKDFTAYADVCFR--QFG-DRVSYWTTVNEPNAFANLGYDYGIAPP 204 (370)
Q Consensus 159 ~~~~~~f~~ya~~v~~--~~~-d~V~~w~t~NEp~~~~~~gy~~g~~~P 204 (370)
++.+.+.+=++.+++ .++ |.|+.+-+.=.|+.....-|..|.+.|
T Consensus 269 -qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p 316 (522)
T TIGR01211 269 -SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKP 316 (522)
T ss_pred -CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCC
Confidence 124455555566665 344 567777766666654444455565544
No 169
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=32.55 E-value=80 Score=32.55 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=38.8
Q ss_pred cHHHHHHHHhcCCCceeecc-ccc-ccccCCCCC-CChhhhHHHHHHHHHHHHcCCe-eEEeccCCCCc
Q 017505 82 YKEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGP-VNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLP 146 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~Ws-ri~P~g~g~-~n~~~~~~y~~~i~~l~~~Gi~-p~vtL~H~~~P 146 (370)
-+|.+++|+++|++.+-+++ +=+ ++... -|. .+ .+...+.|+.+++.|+. +-++|. +++|
T Consensus 151 t~e~l~~L~~~G~~rvsiGvQS~~~~vl~~-l~R~~~---~~~~~~ai~~lr~~G~~~v~~dli-~GlP 214 (453)
T PRK13347 151 TAEMLQALAALGFNRASFGVQDFDPQVQKA-INRIQP---EEMVARAVELLRAAGFESINFDLI-YGLP 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHH-hCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-EeCC
Confidence 47899999999999666665 222 12211 122 23 55677899999999997 445554 4556
No 170
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=32.52 E-value=1.5e+02 Score=30.31 Aligned_cols=91 Identities=12% Similarity=0.221 Sum_probs=54.2
Q ss_pred cHHHHHHHHhcCCCceeecc-ccc-ccccC-CCCCCChhhhHHHHHHHHHHHHcCCeeE-EeccCCCCcHhHHhhhCCCC
Q 017505 82 YKEDVKLMADTGLDAYRFSI-SWS-RLIPN-GRGPVNPKGLQYYNNLINELISYGIQPH-VTLHHFDLPQALEDEYGGWI 157 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~Ws-ri~P~-g~g~~n~~~~~~y~~~i~~l~~~Gi~p~-vtL~H~~~P~wl~~~~ggw~ 157 (370)
-+|.+++|+++|++.+.+++ +=+ ++... +++. + .+-..+.|+.+++.|+..+ ++|. +++|.
T Consensus 140 t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~-~---~~~~~~ai~~l~~~g~~~i~~dlI-~GlP~---------- 204 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQ-K---RADVHQALEWIRAAGFPILNIDLI-YGIPG---------- 204 (430)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCC-C---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 46889999999999777766 332 22222 2332 3 4567899999999999864 5654 56663
Q ss_pred CchhHHHHHHHHHHHHHHhC-CCceeEEEecCCc
Q 017505 158 NRTIVKDFTAYADVCFRQFG-DRVSYWTTVNEPN 190 (370)
Q Consensus 158 ~~~~~~~f~~ya~~v~~~~~-d~V~~w~t~NEp~ 190 (370)
++.+.|.+=.+.+.+ ++ +.|..+...=+|+
T Consensus 205 --qt~e~~~~~l~~~~~-l~~~~is~y~L~~~~~ 235 (430)
T PRK08208 205 --QTHASWMESLDQALV-YRPEELFLYPLYVRPL 235 (430)
T ss_pred --CCHHHHHHHHHHHHh-CCCCEEEEccccccCC
Confidence 124455555555543 33 3444443333343
No 171
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=32.36 E-value=1.6e+02 Score=29.82 Aligned_cols=108 Identities=19% Similarity=0.318 Sum_probs=64.1
Q ss_pred cHHHHHHHHhcCCCcee--ecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCC---CCc---HhHHhh-
Q 017505 82 YKEDVKLMADTGLDAYR--FSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLP---QALEDE- 152 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R--~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~---~~P---~wl~~~- 152 (370)
..+-++.+++.|+..== ++..|..-.. .=.+|++.+.-.+++++.|+++|++.++.++-+ +.+ ..-..+
T Consensus 45 v~~~i~~~~~~~iP~d~~~iD~~~~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~ 122 (441)
T PF01055_consen 45 VREVIDRYRSNGIPLDVIWIDDDYQDGYG--DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKE 122 (441)
T ss_dssp HHHHHHHHHHTT--EEEEEE-GGGSBTTB--TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCccceecccccccccc--ccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhh
Confidence 45566777777765443 4445555221 234566666667899999999999988776532 222 111100
Q ss_pred --h-----CC----------------CCCchhHHHHHHHHHHHHHHhCCCceeEEEecCCccc
Q 017505 153 --Y-----GG----------------WINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (370)
Q Consensus 153 --~-----gg----------------w~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~~ 192 (370)
+ .| |.+++..+.|.+..+.++..+| ---+|+=+|||..+
T Consensus 123 ~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 184 (441)
T PF01055_consen 123 KGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG-VDGWWLDFGEPSSF 184 (441)
T ss_dssp TT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred cCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC-CceEEeecCCcccc
Confidence 0 12 7788888888887777776654 34567899999975
No 172
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=32.28 E-value=67 Score=30.36 Aligned_cols=60 Identities=7% Similarity=0.058 Sum_probs=39.0
Q ss_pred ccCcHHHHHHHHhcCCCceeecccccccccCCC-CCCChhhhHHHHHHHHHHHHcCCeeEEec
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNNLINELISYGIQPHVTL 140 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~-g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (370)
-.+++.-+++++++|.+.+++.- .+..+... ...-...++.++++.+.+.++||.+.+=.
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAG--YDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecC--cccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 34567778999999999999852 11111101 11112345677788899999999887743
No 173
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=32.17 E-value=56 Score=30.62 Aligned_cols=60 Identities=7% Similarity=0.011 Sum_probs=38.9
Q ss_pred ccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEe
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 139 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vt 139 (370)
...++.-|++.+.+|.+.+++........+. ....-+...+.++++.+.+.++||+..+=
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTP-PNVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 4456666799999999999986432211111 11111345667888889999999876544
No 174
>PLN02960 alpha-amylase
Probab=32.10 E-value=81 Score=35.49 Aligned_cols=95 Identities=9% Similarity=0.211 Sum_probs=59.2
Q ss_pred ccccCcHHH-HHHHHhcCCCceeeccc--------cc-------ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEec
Q 017505 77 DGYHKYKED-VKLMADTGLDAYRFSIS--------WS-------RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (370)
Q Consensus 77 d~y~~~~eD-i~l~~~lG~~~~R~si~--------Ws-------ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (370)
..|.-..+. |+-+++||++++-+.=- |- .+.|. =|. .+=++.+|++|.++||.+|+.+
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~-yGt-----p~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSR-FGT-----PDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccc-cCC-----HHHHHHHHHHHHHCCCEEEEEe
Confidence 345555544 89999999999876521 11 11111 122 2348899999999999999996
Q ss_pred --cCCCC--cHhHH--h-----------h--hCCC-------CCchhHHHHHHHHHHHHHHhC
Q 017505 141 --HHFDL--PQALE--D-----------E--YGGW-------INRTIVKDFTAYADVCFRQFG 177 (370)
Q Consensus 141 --~H~~~--P~wl~--~-----------~--~ggw-------~~~~~~~~f~~ya~~v~~~~~ 177 (370)
.|+.- +.-|. + . +..| .++++.+.+.+=++.-++.|+
T Consensus 487 V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 487 VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred cccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45421 10010 0 0 0113 246788888888888888887
No 175
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=31.88 E-value=86 Score=34.35 Aligned_cols=56 Identities=13% Similarity=0.227 Sum_probs=35.5
Q ss_pred HHHHHhcCCCceeecc--cccc--------------cccCCCCCCChh-----hhHHHHHHHHHHHHcCCeeEEecc
Q 017505 86 VKLMADTGLDAYRFSI--SWSR--------------LIPNGRGPVNPK-----GLQYYNNLINELISYGIQPHVTLH 141 (370)
Q Consensus 86 i~l~~~lG~~~~R~si--~Wsr--------------i~P~g~g~~n~~-----~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (370)
|+-+|+||++++=+.= +..- --|..--.++.. .++=++++|++|.++||++|+.+-
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 7899999999997652 1110 000000001111 245699999999999999999843
No 176
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=31.87 E-value=1.7e+02 Score=28.94 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=44.2
Q ss_pred cHHHHHHHHhcCCCceeeccc----c-------cccccCC---------CCCCChhhhHHHHHHHHHHHHcCCeeEEecc
Q 017505 82 YKEDVKLMADTGLDAYRFSIS----W-------SRLIPNG---------RGPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~----W-------sri~P~g---------~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (370)
.++-|+.|+..++|.+.+-++ | +++-..| .|.+-+ +=++++++.++++||++|.-+
T Consensus 20 lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~~rgI~vIPEi- 95 (329)
T cd06568 20 VKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAAERHITVVPEI- 95 (329)
T ss_pred HHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHHHcCCEEEEec-
Confidence 567789999999998877662 3 3332211 133443 337899999999999999877
Q ss_pred CCCCcHhHH
Q 017505 142 HFDLPQALE 150 (370)
Q Consensus 142 H~~~P~wl~ 150 (370)
|+|....
T Consensus 96 --D~PGH~~ 102 (329)
T cd06568 96 --DMPGHTN 102 (329)
T ss_pred --CCcHHHH
Confidence 5787654
No 177
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=31.19 E-value=4.2e+02 Score=26.78 Aligned_cols=98 Identities=18% Similarity=0.152 Sum_probs=55.8
Q ss_pred CCccccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEecc-CCCCcHhHHhhh
Q 017505 75 ACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLH-HFDLPQALEDEY 153 (370)
Q Consensus 75 a~d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~-H~~~P~wl~~~~ 153 (370)
++...-...+-++.++++|++.+=+ ....+.|-+ ....+-=...+++-+.|.++||++..... -+..|.+ +.
T Consensus 27 ~~~~~~~~~e~i~~la~~GfdgVE~--~~~dl~P~~--~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~---~~ 99 (382)
T TIGR02631 27 ATRTALDPVEAVHKLAELGAYGVTF--HDDDLIPFG--APPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVF---KD 99 (382)
T ss_pred CCCCCcCHHHHHHHHHHhCCCEEEe--cccccCCCC--CChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccc---cC
Confidence 3334446788899999999998843 334455552 11111113367788889999999664333 2323433 23
Q ss_pred CCCCCch--hHHHHHHHHHH---HHHHhCCC
Q 017505 154 GGWINRT--IVKDFTAYADV---CFRQFGDR 179 (370)
Q Consensus 154 ggw~~~~--~~~~f~~ya~~---v~~~~~d~ 179 (370)
|++.+++ +.+.=.++.+. ++..+|-.
T Consensus 100 g~las~d~~vR~~ai~~~kraId~A~eLGa~ 130 (382)
T TIGR02631 100 GGFTSNDRSVRRYALRKVLRNMDLGAELGAE 130 (382)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6787753 33332333332 46677753
No 178
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=31.19 E-value=1.5e+02 Score=32.60 Aligned_cols=51 Identities=22% Similarity=0.419 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHH
Q 017505 122 YNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCF 173 (370)
Q Consensus 122 y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~ 173 (370)
...+++.|+++|+..=+...|-.++.-+..+||. +.+..++--.+|++.|-
T Consensus 212 f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e 262 (733)
T PLN02925 212 FTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICR 262 (733)
T ss_pred HHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHH
Confidence 3459999999999999999999999999989864 44456666666666653
No 179
>PRK09389 (R)-citramalate synthase; Provisional
Probab=30.94 E-value=1.4e+02 Score=31.22 Aligned_cols=106 Identities=9% Similarity=-0.051 Sum_probs=71.4
Q ss_pred cHHHHHHHHhcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCC--CcHhHHhh------
Q 017505 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD--LPQALEDE------ 152 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~Wsri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~--~P~wl~~~------ 152 (370)
-++|++.+.+.|++.+++.++-|.+.=.. -+.--++.++...+.+..+++.|+++.+++-... -|..+.+-
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~ 154 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIE 154 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHh
Confidence 48999999999999999999777653221 1333356788999999999999999988876532 23333211
Q ss_pred h----------CCCCCchhHHHHHHHHHHHHHHhCCCceeEEEecCCcc
Q 017505 153 Y----------GGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (370)
Q Consensus 153 ~----------ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~ 191 (370)
. -|.. ++..+.++.+.+.++++ -.--...-|-..+
T Consensus 155 ~Ga~~i~l~DTvG~~---~P~~~~~lv~~l~~~~~-v~l~~H~HND~Gl 199 (488)
T PRK09389 155 AGADRICFCDTVGIL---TPEKTYELFKRLSELVK-GPVSIHCHNDFGL 199 (488)
T ss_pred CCCCEEEEecCCCCc---CHHHHHHHHHHHHhhcC-CeEEEEecCCccH
Confidence 1 2333 34566677777777664 2234567787765
No 180
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=30.79 E-value=3.5e+02 Score=26.56 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCeeEEeccCC-----CCcHhHHhh-------------h--------C---CCCCchhHHHHHHHHHHH
Q 017505 122 YNNLINELISYGIQPHVTLHHF-----DLPQALEDE-------------Y--------G---GWINRTIVKDFTAYADVC 172 (370)
Q Consensus 122 y~~~i~~l~~~Gi~p~vtL~H~-----~~P~wl~~~-------------~--------g---gw~~~~~~~~f~~ya~~v 172 (370)
-+++|+.|+++|++.++..+-+ +.|..-+.. + + -|+||+.++.|.+.-+.+
T Consensus 66 p~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06604 66 PKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKF 145 (339)
T ss_pred HHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHH
Confidence 4688999999999987654322 122221110 0 1 267888888887766655
Q ss_pred HHHhCCCceeEEEecCCccc
Q 017505 173 FRQFGDRVSYWTTVNEPNAF 192 (370)
Q Consensus 173 ~~~~~d~V~~w~t~NEp~~~ 192 (370)
. ..| ---+|+=+|||..+
T Consensus 146 ~-~~G-vdg~w~D~~Ep~~~ 163 (339)
T cd06604 146 V-DLG-VDGIWNDMNEPAVF 163 (339)
T ss_pred h-hCC-CceEeecCCCcccc
Confidence 4 232 23567889999865
No 181
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=30.48 E-value=1.7e+02 Score=28.32 Aligned_cols=72 Identities=13% Similarity=0.070 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceeEEEecCCccccccccc
Q 017505 119 LQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYD 198 (370)
Q Consensus 119 ~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~~~~~gy~ 198 (370)
++-+.+.++.++++||++.+.+. +++|. ++.+.+.+=++.+.+.=-+.|+.....-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 45578899999999999887765 46662 234666666776655444678888888888865554455
Q ss_pred cCCCC
Q 017505 199 YGIAP 203 (370)
Q Consensus 199 ~g~~~ 203 (370)
.|.+.
T Consensus 229 ~g~~~ 233 (302)
T TIGR01212 229 KGELK 233 (302)
T ss_pred cCCCC
Confidence 55544
No 182
>PRK10426 alpha-glucosidase; Provisional
Probab=30.18 E-value=4e+02 Score=28.91 Aligned_cols=106 Identities=20% Similarity=0.266 Sum_probs=64.8
Q ss_pred cHHHHHHHHhcCCCceeecc-cccccccCCCC-------CCChhhhHHHHHHHHHHHHcCCeeEEeccCC---CCcHhHH
Q 017505 82 YKEDVKLMADTGLDAYRFSI-SWSRLIPNGRG-------PVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALE 150 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~Wsri~P~g~g-------~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~---~~P~wl~ 150 (370)
..+-++.+++.|+..==+-| .|.......-| .+|.+-+--.+++|+.|++.|++.++.+.-+ +.|..-+
T Consensus 223 v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e 302 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCEE 302 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHHH
Confidence 33456777888876544433 68654322111 3355555556899999999999988876532 3343322
Q ss_pred hh---h------C------------C---CCCchhHHHHHHHHHHHHHHhCCCceeE-EEecCC
Q 017505 151 DE---Y------G------------G---WINRTIVKDFTAYADVCFRQFGDRVSYW-TTVNEP 189 (370)
Q Consensus 151 ~~---~------g------------g---w~~~~~~~~f~~ya~~v~~~~~d~V~~w-~t~NEp 189 (370)
.+ | | + ++||+..+.|.+..+.-....| |+.| .=+||+
T Consensus 303 ~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 303 AAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 11 0 1 1 6788999988877665554554 5555 788994
No 183
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=30.00 E-value=43 Score=24.57 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=25.0
Q ss_pred HHHHHHHHH-cCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHH
Q 017505 123 NNLINELIS-YGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYA 169 (370)
Q Consensus 123 ~~~i~~l~~-~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya 169 (370)
+++++.|.+ +||+|.+|.. .|-. +-+++.+.|..|-
T Consensus 19 ~E~v~~L~~~a~I~P~~T~~-----VW~~------LekeN~eFF~aY~ 55 (57)
T TIGR01589 19 EETVSFLFENAGISPKFTRF-----VWYL------LEKENADFFRCYK 55 (57)
T ss_pred HHHHHHHHHHcCCCchhHHH-----HHHH------HHHHHHHHHHHHh
Confidence 567766664 9999998874 6632 4456778888773
No 184
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=29.54 E-value=95 Score=31.96 Aligned_cols=60 Identities=17% Similarity=0.332 Sum_probs=38.9
Q ss_pred cHHHHHHHHhcCCCceeecc-ccc-ccccCCCCC-CChhhhHHHHHHHHHHHHcCCe-eEEeccCCCCc
Q 017505 82 YKEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGP-VNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLP 146 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si-~Ws-ri~P~g~g~-~n~~~~~~y~~~i~~l~~~Gi~-p~vtL~H~~~P 146 (370)
-++.+++|+++|++.+-+++ +=+ ++... -+. .+ .+.+.+.++.+++.|++ +.++|. +++|
T Consensus 150 ~~e~l~~lk~~G~~risiGvqS~~~~~l~~-l~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGVQDFNKEVQQA-VNRIQP---EEMIFELMNHAREAGFTSINIDLI-YGLP 213 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHH-hCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-eeCC
Confidence 37889999999999666665 222 12211 122 23 45678999999999997 445543 4555
No 185
>PRK08508 biotin synthase; Provisional
Probab=29.49 E-value=1e+02 Score=29.56 Aligned_cols=56 Identities=11% Similarity=0.063 Sum_probs=39.4
Q ss_pred cHHHHHHHHhcCCCceeecccc-cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEec
Q 017505 82 YKEDVKLMADTGLDAYRFSISW-SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~W-sri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (370)
.+|.++.|+++|++.+-.+++= ++++|.-...-+ ++..-+.++.+++.||++--++
T Consensus 101 ~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~---~~~~l~~i~~a~~~Gi~v~sg~ 157 (279)
T PRK08508 101 SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHT---WEERFQTCENAKEAGLGLCSGG 157 (279)
T ss_pred CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCC---HHHHHHHHHHHHHcCCeeccee
Confidence 5899999999999999988732 346666211122 4556667788999999765444
No 186
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.37 E-value=1.2e+02 Score=31.46 Aligned_cols=116 Identities=11% Similarity=0.050 Sum_probs=61.8
Q ss_pred CChhHHHH--HHHHH---HHHHHHHHHHHHccCCCCcceEEeeeCCccccCCC--cHHHHHHHHHHHhccccccccccc-
Q 017505 219 STEPYITV--HHVLL---AHASVARLYRKKYQDKQRGYIGVNIFAFGLLPLTN--STEDAIATQRYYDFLIGWMANPLV- 290 (370)
Q Consensus 219 ~~~~~qa~--hnlll---AHA~Av~~~re~~~~~~~~kIG~~~~~~~~yP~s~--~p~D~~Aa~~~~~~~~~~flD~~~- 290 (370)
..+.+|++ ||... -+.+|+.+++......++.+.||--....-.-..+ .-.|.+..++. ...--..|.+
T Consensus 555 E~elF~aI~ehnvsyPKslSkEAv~ickg~ltK~P~kRLGcg~~ge~di~~H~FFR~iDWek~E~~---eiqPPfkPk~k 631 (683)
T KOG0696|consen 555 EDELFQAIMEHNVSYPKSLSKEAVAICKGLLTKHPGKRLGCGPEGERDIREHPFFRRIDWEKLERR---EIQPPFKPKIK 631 (683)
T ss_pred HHHHHHHHHHccCcCcccccHHHHHHHHHHhhcCCccccCCCCccccchhhCcchhhccHHHHhhc---cCCCCCCCccc
Confidence 34566655 33321 25568888887544445667886543221100000 11222222221 1111233444
Q ss_pred ccCCCchhHHhhcCCCCCCCHHHHHHhcC--CCcEEEEecccCceeecC
Q 017505 291 YGDYPKIMKQNVGSRLPAFSDRESKQVKG--SADFLGVINYYIVYVKDN 337 (370)
Q Consensus 291 ~G~YP~~~~~~l~~~~p~~t~eD~~~ik~--~~DFiGiNYY~s~~v~~~ 337 (370)
.|+--+-+-..+.+.-|..|+-|...+.+ ..||.|++|-.+..|+..
T Consensus 632 ~~r~~eNFD~~Ft~~~~~lTPpD~~v~~nldq~eF~gFsfvNpefv~~~ 680 (683)
T KOG0696|consen 632 CGRDAENFDKFFTREPTDLTPPDKLVMMNLDQSEFEGFSFVNPEFVKPI 680 (683)
T ss_pred cCCchhhhhHHHhcCCCCCCCchHHHHhcCchhhcCceeeeChhhcCCC
Confidence 44444444444444567889999988864 569999999988888753
No 187
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=28.82 E-value=93 Score=33.87 Aligned_cols=65 Identities=14% Similarity=0.080 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCc-----hhHHHHHHHHHHHHHHhCCCceeEEEecCCcc
Q 017505 124 NLINELISYGIQPHVTLHHFDLPQALEDEYGGWINR-----TIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (370)
Q Consensus 124 ~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~-----~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~ 191 (370)
.++.++++++=.+-+....|..|.|+. +||..+ .++.+..++..-+.+.+|=.++|--+|||=..
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~---~g~~~~~~~~~~~a~Y~~~wl~ga~~~~gl~idYvg~~NEr~~ 185 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVG---NGWNWPYDNPQLTAYYVVSWLLGAKKTHGLDIDYVGIWNERGF 185 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGG---TTSS-TTSSHHHHHHHHHHHHHHHHHHH-----EE-S-TTS--
T ss_pred hhHHHHHhhCCCCeEEEeccCCCcccc---CCCCCcccchhhhhHHHHHHHHHHHHHhCCCceEechhhccCC
Confidence 478888988888777878899999995 454332 23444456667778888888888888999764
No 188
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=28.73 E-value=33 Score=24.87 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=25.0
Q ss_pred HHHHHHHH-HcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHH
Q 017505 123 NNLINELI-SYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYA 169 (370)
Q Consensus 123 ~~~i~~l~-~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya 169 (370)
+++++.|. .+||+|.+|.. .|-. +.+++++.|..|-
T Consensus 16 ~E~v~~L~~~a~I~P~~T~~-----VW~~------Le~eN~eFF~aY~ 52 (54)
T PF09713_consen 16 EECVRALQKQANIEPVFTST-----VWQK------LEKENPEFFKAYY 52 (54)
T ss_pred HHHHHHHHHHcCCChHHHHH-----HHHH------HHHHCHHHHHHhh
Confidence 57788884 66999998874 5632 3445677787763
No 189
>PRK06256 biotin synthase; Validated
Probab=28.68 E-value=86 Score=30.67 Aligned_cols=57 Identities=16% Similarity=0.217 Sum_probs=39.3
Q ss_pred CcHHHHHHHHhcCCCceeecc-cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEec
Q 017505 81 KYKEDVKLMADTGLDAYRFSI-SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (370)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si-~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (370)
.-+|.++.|+++|++.+-+++ +=.++.+.-...-+ ++.+.+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t---~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHT---YEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCC---HHHHHHHHHHHHHcCCeeccCe
Confidence 457889999999999988876 32224443111112 5667789999999999865443
No 190
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=28.68 E-value=39 Score=29.67 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=41.0
Q ss_pred ccCcHHHHHHHHhcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHcCCeeEEe
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNNLINELISYGIQPHVT 139 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g-~g~~n~~~~~~y~~~i~~l~~~Gi~p~vt 139 (370)
....++-+++++.+|++.+++...+-...+.. ...--....+.++++.+.+.++|+.+.+=
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE 131 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALE 131 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEe
Confidence 55678889999999999999997641111110 01111235677888888899999876544
No 191
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=28.22 E-value=5.6e+02 Score=25.00 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=42.2
Q ss_pred cHHHHHHHHhcCCCceeecc--cccc---cccC-----------------------CCCCCChhhhHHHHHHHHHHHHcC
Q 017505 82 YKEDVKLMADTGLDAYRFSI--SWSR---LIPN-----------------------GRGPVNPKGLQYYNNLINELISYG 133 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si--~Wsr---i~P~-----------------------g~g~~n~~~~~~y~~~i~~l~~~G 133 (370)
.++=|+.|+..++|.+-+=+ +|+- ..|. +.|.+-++ =++++++.++++|
T Consensus 19 ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~---di~eiv~yA~~rg 95 (326)
T cd06564 19 LKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKE---EFKELIAYAKDRG 95 (326)
T ss_pred HHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHH---HHHHHHHHHHHcC
Confidence 45668899999999887644 2221 1111 12345533 4789999999999
Q ss_pred CeeEEeccCCCCcHhHH
Q 017505 134 IQPHVTLHHFDLPQALE 150 (370)
Q Consensus 134 i~p~vtL~H~~~P~wl~ 150 (370)
|++|.-+ |+|....
T Consensus 96 I~vIPEI---D~PGH~~ 109 (326)
T cd06564 96 VNIIPEI---DSPGHSL 109 (326)
T ss_pred CeEeccC---CCcHHHH
Confidence 9998665 6787644
No 192
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=27.84 E-value=1.8e+02 Score=27.84 Aligned_cols=72 Identities=10% Similarity=0.019 Sum_probs=50.7
Q ss_pred CccccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHH
Q 017505 76 CDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALE 150 (370)
Q Consensus 76 ~d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~ 150 (370)
.+..+...+=.+.+|++|++.+|-++.=+|--|.+ +.--+.+.++.+-+.+++.||..+.+.++-..+..+.
T Consensus 37 ie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s---~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~ 108 (266)
T PRK13398 37 VESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYS---FQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVA 108 (266)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCc---cCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHH
Confidence 34456666777889999999999997557766553 2211244566777778999999999998755554443
No 193
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=27.76 E-value=2.5e+02 Score=26.34 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=37.9
Q ss_pred cCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHc-CCeeEEe
Q 017505 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISY-GIQPHVT 139 (370)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~-Gi~p~vt 139 (370)
..+++.+++++++|++.+=+.+......+. ...+. +..+++.+.+.++ |+...+.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~--~~~~~---~~~~~l~~~~~~~~~~~i~~~ 65 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS--RPLKK---ERAEKFKAIAEEGPSICLSVH 65 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC--CCCCH---HHHHHHHHHHHHcCCCcEEEE
Confidence 668999999999999999888876554433 11233 3456667777777 6665543
No 194
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=27.48 E-value=48 Score=31.02 Aligned_cols=24 Identities=13% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCceeEEEecCCcc
Q 017505 167 AYADVCFRQFGDRVSYWTTVNEPNA 191 (370)
Q Consensus 167 ~ya~~v~~~~~d~V~~w~t~NEp~~ 191 (370)
.+.+.+... +..+++++.||||+.
T Consensus 54 ~~~~~v~~~-~~~~~~ll~fNEPD~ 77 (239)
T PF11790_consen 54 DWLANVQNA-HPGSKHLLGFNEPDL 77 (239)
T ss_pred HHHHHHHhh-ccCccceeeecCCCC
No 195
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=26.98 E-value=2.4e+02 Score=26.61 Aligned_cols=90 Identities=14% Similarity=0.235 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCC--ceeecccccccccCCCC--CCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCC
Q 017505 83 KEDVKLMADTGLD--AYRFSISWSRLIPNGRG--PVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWIN 158 (370)
Q Consensus 83 ~eDi~l~~~lG~~--~~R~si~Wsri~P~g~g--~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~ 158 (370)
.+-++.+++.|+. ++=+.+.|..- .+.- .+|.+.+.-.+++|+.|++.|++.++.+. |.-
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~~~~~--~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~----P~v---------- 90 (265)
T cd06589 27 LEVIDGMRENDIPLDGFVLDDDYTDG--YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID----PYI---------- 90 (265)
T ss_pred HHHHHHHHHcCCCccEEEECcccccC--CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC----hhH----------
Confidence 4455666665544 55555566542 2223 45555566678999999999999998774 321
Q ss_pred chhHHHHHHHHHHHHHHhCCCceeEEEecCCccc
Q 017505 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (370)
Q Consensus 159 ~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~~ 192 (370)
.+.|.+..+.+....| ---+|+=+|||...
T Consensus 91 ---~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 120 (265)
T cd06589 91 ---REWWAEVVKKLLVSLG-VDGFWTDMGEPSPG 120 (265)
T ss_pred ---HHHHHHHHHHhhccCC-CCEEeccCCCCCcC
Confidence 4455554443322222 24567889999754
No 196
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=26.36 E-value=1.6e+02 Score=27.30 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=30.9
Q ss_pred ccccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCee
Q 017505 77 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQP 136 (370)
Q Consensus 77 d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p 136 (370)
+-.-.-+.-++|+++||.+++.| +|- .|.-. ++=|+.+-++|.++|+..
T Consensus 132 ~~~V~vetAiaml~dmG~~SiKf-------fPm-~Gl~~---leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 132 DAIVPVETAIAMLKDMGGSSIKF-------FPM-GGLKH---LEELKAVAKACARNGFTL 180 (218)
T ss_dssp --EEEHHHHHHHHHHTT--EEEE-----------TTTTT---HHHHHHHHHHHHHCT-EE
T ss_pred CccccHHHHHHHHHHcCCCeeeE-------eec-CCccc---HHHHHHHHHHHHHcCcee
Confidence 33445678899999999999987 787 35433 556778888888888643
No 197
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=26.35 E-value=3.2e+02 Score=26.00 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=47.7
Q ss_pred CCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceeEEEecCCc
Q 017505 111 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (370)
Q Consensus 111 ~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~ 190 (370)
+|.+|.+ -+++.++.+.+.|+.-++.+-+-+ - ...-+.+...+..+.+.+.-+++++.+.-....+
T Consensus 13 ~g~iD~~---~~~~~i~~l~~~Gv~Gi~~~GstG----------E-~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s 78 (285)
T TIGR00674 13 DGSVDFA---ALEKLIDFQIENGTDAIVVVGTTG----------E-SPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNA 78 (285)
T ss_pred CCCcCHH---HHHHHHHHHHHcCCCEEEECccCc----------c-cccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCcc
Confidence 5899954 588999999999999998875411 1 1112356777778888888888888776655544
Q ss_pred c
Q 017505 191 A 191 (370)
Q Consensus 191 ~ 191 (370)
.
T Consensus 79 ~ 79 (285)
T TIGR00674 79 T 79 (285)
T ss_pred H
Confidence 3
No 198
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=26.29 E-value=1.7e+02 Score=27.37 Aligned_cols=59 Identities=12% Similarity=0.231 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCC---CCchhHHHHHHHHHHHHHHhCCCce
Q 017505 121 YYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGW---INRTIVKDFTAYADVCFRQFGDRVS 181 (370)
Q Consensus 121 ~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw---~~~~~~~~f~~ya~~v~~~~~d~V~ 181 (370)
..+++++++.++|++-+.-.-|.++|..... ..| .+.+..+.|.+-++.+-++|+++|+
T Consensus 16 ~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~--~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~ 77 (253)
T TIGR01856 16 TLEEVVQEAIQLGFEEICFTEHAPLPFEYPE--ETALDKMAFSSLPEYFKEINRLKKEYADKLK 77 (253)
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCcccCCCc--cccccchhHHHHHHHHHHHHHHHHHhhCCCe
Confidence 4679999999999999999999775432211 112 1123344555555667788987655
No 199
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=25.75 E-value=3.1e+02 Score=27.36 Aligned_cols=94 Identities=14% Similarity=0.184 Sum_probs=61.9
Q ss_pred cHHHHHHHHhcCCCceeecccccccccCC---CCCCChhhhHHHHHHHHHHHHcCCe-eEEeccCCCCcHhHHhhhCCCC
Q 017505 82 YKEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWI 157 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~Wsri~P~g---~g~~n~~~~~~y~~~i~~l~~~Gi~-p~vtL~H~~~P~wl~~~~ggw~ 157 (370)
-++.++.++++|++.+-+++ .-+-++- -|... ..+-..+.|+.+++.|+. +-++|. +++|.
T Consensus 102 ~~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg---------- 166 (370)
T PRK06294 102 SESYIRALALTGINRISIGV--QTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT---------- 166 (370)
T ss_pred CHHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 36889999999999665555 2222221 12221 144567889999999997 556665 56663
Q ss_pred CchhHHHHHHHHHHHHHHhCCCceeEEEecCCccc
Q 017505 158 NRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (370)
Q Consensus 158 ~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~~ 192 (370)
++.+.|.+-.+.+.+.=-++|..+...=||+..
T Consensus 167 --qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 --QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred --CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 245677777777766444688888888888753
No 200
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.29 E-value=96 Score=29.09 Aligned_cols=59 Identities=8% Similarity=0.154 Sum_probs=37.4
Q ss_pred cCcHHHHHHHHhcCCCceeeccccccc-ccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEec
Q 017505 80 HKYKEDVKLMADTGLDAYRFSISWSRL-IPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (370)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~Wsri-~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (370)
...++-|+..++||++.+|+. ..... .|. ....-...++.++++.+.+.++||+..+=.
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~-~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLA-GYDVYYEEK-SEETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEC-Ccccccccc-cHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 345666888999999999974 11111 111 111112345678888889999999877644
No 201
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=25.24 E-value=1.1e+02 Score=31.81 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=40.6
Q ss_pred cHHHHHHHHhcCCCceeeccc-c-cccccC-CCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCc
Q 017505 82 YKEDVKLMADTGLDAYRFSIS-W-SRLIPN-GRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLP 146 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~-W-sri~P~-g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P 146 (370)
-++-+++|+++|++.+-++++ = .++... +++ .+ .+-..+.|+.++++||.+.+.+. +++|
T Consensus 286 d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~-~t---~~~~~~ai~~l~~~Gi~~~~~~I-~G~P 348 (497)
T TIGR02026 286 DADILHLYRRAGLVHISLGTEAAAQATLDHFRKG-TT---TSTNKEAIRLLRQHNILSEAQFI-TGFE 348 (497)
T ss_pred CHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCC-CC---HHHHHHHHHHHHHCCCcEEEEEE-EECC
Confidence 356689999999998888773 2 223222 122 23 45577999999999999887654 3555
No 202
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=25.02 E-value=81 Score=26.05 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCCceeeccc-cccc-ccCCCCCCChhhhHHHHHHHHHHHHcCCee
Q 017505 83 KEDVKLMADTGLDAYRFSIS-WSRL-IPNGRGPVNPKGLQYYNNLINELISYGIQP 136 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si~-Wsri-~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p 136 (370)
++.++.+++.|++.+++|++ -+.- ..+--+ ....++..-+.++.++++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCc
Confidence 89999999999999999983 3331 111001 1123677889999999999995
No 203
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=24.77 E-value=42 Score=29.62 Aligned_cols=43 Identities=7% Similarity=0.130 Sum_probs=32.6
Q ss_pred ccccccCCCchhHHhhcCCCCCCCHHHHHHhcCCCcEEEEecccC
Q 017505 287 NPLVYGDYPKIMKQNVGSRLPAFSDRESKQVKGSADFLGVINYYI 331 (370)
Q Consensus 287 D~~~~G~YP~~~~~~l~~~~p~~t~eD~~~ik~~~DFiGiNYY~s 331 (370)
...+.|+..+.+..++. -.++.|.|...|..++|||.|.-++.
T Consensus 71 ravl~Gkv~EqlaP~lp--~F~ynP~D~RFlG~PVD~IvF~Gls~ 113 (156)
T PF10107_consen 71 RAVLKGKVSEQLAPFLP--EFPYNPKDARFLGSPVDFIVFDGLSD 113 (156)
T ss_pred HHHHcchhHHHhhhccC--CCCCChhhheecCCCceEEEEcCCCC
Confidence 34567877766666542 23568999999999999999999976
No 204
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.73 E-value=2.5e+02 Score=27.47 Aligned_cols=62 Identities=15% Similarity=0.242 Sum_probs=43.9
Q ss_pred cHHHHHHHHhcCCCceeecc----cccc---cccC----C--CCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHh
Q 017505 82 YKEDVKLMADTGLDAYRFSI----SWSR---LIPN----G--RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQA 148 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si----~Wsr---i~P~----g--~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~w 148 (370)
.++=|+.|+..++|.+.+-+ +|+- -.|+ | .|.+-++ =++++++.++++||++|.-+ |+|..
T Consensus 20 ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~---di~elv~yA~~rgI~vIPEI---d~PGH 93 (311)
T cd06570 20 IKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQE---QIREVVAYARDRGIRVVPEI---DVPGH 93 (311)
T ss_pred HHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHH---HHHHHHHHHHHcCCEEEEee---cCccc
Confidence 45668999999999888766 5642 2333 1 1245543 47899999999999999887 46654
Q ss_pred H
Q 017505 149 L 149 (370)
Q Consensus 149 l 149 (370)
.
T Consensus 94 ~ 94 (311)
T cd06570 94 A 94 (311)
T ss_pred h
Confidence 3
No 205
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=24.64 E-value=3.8e+02 Score=25.10 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=37.9
Q ss_pred cCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEE
Q 017505 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV 138 (370)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~v 138 (370)
..+.|-+++++++|++.+=+++......+. .-.++ -.....+-+.+.++||++..
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~-~~~~~---~~~~~~~~~~l~~~gl~i~~ 70 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDDRLS-RLDWS---REQRLALVNAIIETGVRIPS 70 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccchhh-ccCCC---HHHHHHHHHHHHHcCCCcee
Confidence 357899999999999999987654322222 11122 23466788889999999753
No 206
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=24.24 E-value=4.3e+02 Score=26.27 Aligned_cols=92 Identities=14% Similarity=0.250 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCCceeecc-ccc-ccccCCCCC-CChhhhHHHHHHHHHHHHcCCe-eEEeccCCCCcHhHHhhhCCCCC
Q 017505 83 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGP-VNPKGLQYYNNLINELISYGIQ-PHVTLHHFDLPQALEDEYGGWIN 158 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~Ws-ri~P~g~g~-~n~~~~~~y~~~i~~l~~~Gi~-p~vtL~H~~~P~wl~~~~ggw~~ 158 (370)
+|.+++|+++|++.+-+++ +=+ ++... -|. .+ .+-+.+.++.++++|+. +.+++. +++|.
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~-l~R~~~---~~~~~~ai~~lr~~G~~~v~~dlI-~GlPg----------- 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQ-LNRTHT---IQDSKEAINLLHKNGIYNISCDFL-YCLPI----------- 166 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ecCCC-----------
Confidence 7899999999999666665 232 23222 122 23 44577899999999997 556654 56662
Q ss_pred chhHHHHHHHHHHHHHHhCCCceeEEEecCCcc
Q 017505 159 RTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNA 191 (370)
Q Consensus 159 ~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~ 191 (370)
++.+.|.+=.+.+.+.=-+.|..+...=||+.
T Consensus 167 -qt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT 198 (353)
T PRK05904 167 -LKLKDLDEVFNFILKHKINHISFYSLEIKEGS 198 (353)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEEeeEecCCC
Confidence 23455665555554432345555554445653
No 207
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=23.94 E-value=99 Score=28.48 Aligned_cols=43 Identities=21% Similarity=0.468 Sum_probs=29.0
Q ss_pred ccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHH
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELI 130 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~ 130 (370)
.....+||+.++++|++.+=|+. .-. +|.+|. +..+++++.+.
T Consensus 71 ~~~M~~dI~~~~~~GadG~VfG~-----L~~-dg~iD~---~~~~~Li~~a~ 113 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGADGFVFGA-----LTE-DGEIDE---EALEELIEAAG 113 (201)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE-------BET-TSSB-H---HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCeeEEEe-----ECC-CCCcCH---HHHHHHHHhcC
Confidence 34466799999999999999986 222 588994 55678888765
No 208
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=23.39 E-value=1.6e+02 Score=26.32 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=45.5
Q ss_pred CcCCccccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEe
Q 017505 73 DIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 139 (370)
Q Consensus 73 ~~a~d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vt 139 (370)
..+.|.+..-...+..+..+.++.++++.++-+-... +.......+.+++.+++.|++++++
T Consensus 148 ~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~-----~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 148 RIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQT-----DPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred EEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhcc-----ChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 3566666665677888888888888888877654333 2223567889999999999998876
No 209
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.02 E-value=4.6e+02 Score=24.52 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=35.3
Q ss_pred CcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEE
Q 017505 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV 138 (370)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~v 138 (370)
.+++-++.++++|++.+=+++.=....+. ...++. ...+.+-+.++++||++..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~-~~~~~~---~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERLA-RLDWSR---EQRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccchh-ccCCCH---HHHHHHHHHHHHcCCceeE
Confidence 47899999999999999875421111111 111232 3466788888999999753
No 210
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=22.89 E-value=6.7e+02 Score=23.92 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=55.4
Q ss_pred cCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCc
Q 017505 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINR 159 (370)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~ 159 (370)
.+..+-++..++.|+. ++.+|+.+--.|. .|..+ .+++.++++.+.+.|..-+ .|. +- .|...
T Consensus 114 ~~~~~~v~~ak~~G~~-v~~~i~~~f~~~~-~~~~~---~~~~~~~~~~~~~~Ga~~i-~l~---------DT-~G~~~- 176 (274)
T cd07938 114 ERFEPVAELAKAAGLR-VRGYVSTAFGCPY-EGEVP---PERVAEVAERLLDLGCDEI-SLG---------DT-IGVAT- 176 (274)
T ss_pred HHHHHHHHHHHHCCCe-EEEEEEeEecCCC-CCCCC---HHHHHHHHHHHHHcCCCEE-EEC---------CC-CCccC-
Confidence 3345558889999984 7777777655566 56676 6789999999999998643 442 22 45554
Q ss_pred hhHHHHHHHHHHHHHHhCC
Q 017505 160 TIVKDFTAYADVCFRQFGD 178 (370)
Q Consensus 160 ~~~~~f~~ya~~v~~~~~d 178 (370)
+..+.++++.+.+++++
T Consensus 177 --P~~v~~lv~~l~~~~~~ 193 (274)
T cd07938 177 --PAQVRRLLEAVLERFPD 193 (274)
T ss_pred --HHHHHHHHHHHHHHCCC
Confidence 44666777777777754
No 211
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=22.87 E-value=1e+02 Score=26.13 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=40.0
Q ss_pred cHHHHHHHHhcCCCceeeccccc-ccccCC-C-CCCChhhhHHHHHHHHHHHHcCCeeEEecc
Q 017505 82 YKEDVKLMADTGLDAYRFSISWS-RLIPNG-R-GPVNPKGLQYYNNLINELISYGIQPHVTLH 141 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~Ws-ri~P~g-~-g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~ 141 (370)
-+++++.|+++|+..+.+|++-. .-.-.. . +.. .++.+-+.|+.+.+.|+...+++.
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~i 146 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGE---SFKERLEALKELREAGLGLSTTLL 146 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHHHHhcCCc---CHHHHHHHHHHHHHcCCCceEEEE
Confidence 47899999999999999999533 321110 0 122 256778888899998888776663
No 212
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=22.67 E-value=6.3e+02 Score=24.35 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=55.8
Q ss_pred ccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCC
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWIN 158 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~ 158 (370)
..+.++-++..++.|+. ++.+|+=+---|. .|..+ .+++.++++.+.+.|..- +.|. +- .|..+
T Consensus 119 l~~~~~~v~~ak~~g~~-v~~~i~~~~~~~~-~~~~~---~~~~~~~~~~~~~~G~d~-i~l~---------DT-~G~~~ 182 (287)
T PRK05692 119 LERFEPVAEAAKQAGVR-VRGYVSCVLGCPY-EGEVP---PEAVADVAERLFALGCYE-ISLG---------DT-IGVGT 182 (287)
T ss_pred HHHHHHHHHHHHHcCCE-EEEEEEEEecCCC-CCCCC---HHHHHHHHHHHHHcCCcE-EEec---------cc-cCccC
Confidence 33456678888999974 6766665443455 56666 678999999999999874 4442 22 45555
Q ss_pred chhHHHHHHHHHHHHHHhCC
Q 017505 159 RTIVKDFTAYADVCFRQFGD 178 (370)
Q Consensus 159 ~~~~~~f~~ya~~v~~~~~d 178 (370)
| ....+.++.+.+++++
T Consensus 183 P---~~v~~lv~~l~~~~~~ 199 (287)
T PRK05692 183 P---GQVRAVLEAVLAEFPA 199 (287)
T ss_pred H---HHHHHHHHHHHHhCCC
Confidence 4 4666777777788865
No 213
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=22.54 E-value=1.6e+02 Score=30.27 Aligned_cols=60 Identities=12% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCceeecc--cccccccCCCCCCChhhhHHHHHHHHHHHHcCC-eeEEeccCCCCc
Q 017505 83 KEDVKLMADTGLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNNLINELISYGI-QPHVTLHHFDLP 146 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si--~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi-~p~vtL~H~~~P 146 (370)
+|.+++|+++|++.+.+++ -=.++...-....+ .+-..+.++.+++.|+ .+.++|. +++|
T Consensus 151 ~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQP---FEFTFALVEAARELGFTSINIDLI-YGLP 213 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCCcEEEEEE-ccCC
No 214
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=22.53 E-value=2.2e+02 Score=28.15 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=60.3
Q ss_pred cCcHHHHHHHHhcCCCceeecc--cccccccC-C------CCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCC------
Q 017505 80 HKYKEDVKLMADTGLDAYRFSI--SWSRLIPN-G------RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD------ 144 (370)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si--~Wsri~P~-g------~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~------ 144 (370)
.+.++=++++++.|+|++=+.+ ++-.|-=. . .|.... .+.-...+++.|+++||.|+.=+.-|-
T Consensus 13 ~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~-~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~ 91 (316)
T PF13200_consen 13 ERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKP-YIKDLKALVKKLKEHGIYPIARIVVFKDPVLAE 91 (316)
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccc-cccCHHHHHHHHHHCCCEEEEEEEEecChHHhh
Confidence 4578889999999999999988 45444321 0 122111 123477999999999999987665542
Q ss_pred -CcHhHHhhhC----------CCCCc---hhHHHHHHHHHHHHHH
Q 017505 145 -LPQALEDEYG----------GWINR---TIVKDFTAYADVCFRQ 175 (370)
Q Consensus 145 -~P~wl~~~~g----------gw~~~---~~~~~f~~ya~~v~~~ 175 (370)
.|.|....-+ .|.+| ++.+.-.+-|+.+++.
T Consensus 92 ~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 92 AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 3555432112 27665 5666666666666643
No 215
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=22.40 E-value=92 Score=32.62 Aligned_cols=87 Identities=10% Similarity=0.134 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCCceeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHcCC-eeEEeccCCCCcHhHHhhhCCCCCc
Q 017505 83 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGI-QPHVTLHHFDLPQALEDEYGGWINR 159 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~Ws-ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi-~p~vtL~H~~~P~wl~~~~ggw~~~ 159 (370)
+|-++.|+++|++.+-+++ +-+ ++... -|... ..+-..+.++.+++.|+ .+.++|. +++|.
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~-igR~h--t~e~v~~ai~~ar~~Gf~~In~DLI-~GLPg------------ 332 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQTMNDETLKA-IGRHH--TVEDIIEKFHLAREMGFDNINMDLI-IGLPG------------ 332 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCcCCHHHHHH-hCCCC--CHHHHHHHHHHHHhCCCCeEEEEEE-eCCCC------------
Confidence 6789999999998444444 223 12222 13321 25567889999999999 5556665 56663
Q ss_pred hhHHHHHHHHHHHHHHhCCCceeEEE
Q 017505 160 TIVKDFTAYADVCFRQFGDRVSYWTT 185 (370)
Q Consensus 160 ~~~~~f~~ya~~v~~~~~d~V~~w~t 185 (370)
++.+.|.+=.+.+.+.=-+.|.....
T Consensus 333 Et~ed~~~tl~~l~~L~pd~isv~~L 358 (488)
T PRK08207 333 EGLEEVKHTLEEIEKLNPESLTVHTL 358 (488)
T ss_pred CCHHHHHHHHHHHHhcCcCEEEEEec
Confidence 23455666566554433344444443
No 216
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.31 E-value=4.8e+02 Score=24.23 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=36.9
Q ss_pred CcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEe
Q 017505 81 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVT 139 (370)
Q Consensus 81 ~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vt 139 (370)
-++|-++.++++|++.+=+++.=.+..+. ...++. ...+.+-+.+.++||++...
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~-~~~~~~---~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDERLA-RLDWSK---EERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcccccc-cccCCH---HHHHHHHHHHHHcCCCceEE
Confidence 46889999999999999887541111111 122332 24667888999999997643
No 217
>TIGR03586 PseI pseudaminic acid synthase.
Probab=22.07 E-value=1.4e+02 Score=29.71 Aligned_cols=64 Identities=9% Similarity=0.148 Sum_probs=41.7
Q ss_pred ccCcHHHHHHHHhcCCCceeecccccc-c-ccCC-------CCCCC-----------hhhhHHHHHHHHHHHHcCCeeEE
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSISWSR-L-IPNG-------RGPVN-----------PKGLQYYNNLINELISYGIQPHV 138 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~Wsr-i-~P~g-------~g~~n-----------~~~~~~y~~~i~~l~~~Gi~p~v 138 (370)
.+.-++=|+.+++.|.++++|..-=++ + .|.. ++.++ +-..++|.++.+.|++.||..+.
T Consensus 16 ~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~s 95 (327)
T TIGR03586 16 LERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIFS 95 (327)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEEE
Confidence 344566678889999999998752111 1 1110 01221 11357788999999999999998
Q ss_pred eccC
Q 017505 139 TLHH 142 (370)
Q Consensus 139 tL~H 142 (370)
|.+.
T Consensus 96 tpfd 99 (327)
T TIGR03586 96 SPFD 99 (327)
T ss_pred ccCC
Confidence 8753
No 218
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=21.74 E-value=36 Score=32.53 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=40.5
Q ss_pred HHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceeEEEecCCccccccccccCCCC
Q 017505 128 ELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPNAFANLGYDYGIAP 203 (370)
Q Consensus 128 ~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~~~~~gy~~g~~~ 203 (370)
-+.+..+.|+++||||+.= ..-+.+....+.++.+.+=++.--.++-.+-..|---....+.+-.||....++
T Consensus 76 ~~~a~~~~pl~SlHH~~~~---~PifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~ 148 (255)
T PF04646_consen 76 FLEAHPLAPLVSLHHWDSV---DPIFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYR 148 (255)
T ss_pred eeecCCCCceeeeeehhhc---cccCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEEC
Confidence 3444568999999999852 222455555566666666444433333322222222222344455788776663
No 219
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=21.64 E-value=2.4e+02 Score=30.36 Aligned_cols=54 Identities=19% Similarity=0.339 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHH
Q 017505 120 QYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFR 174 (370)
Q Consensus 120 ~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~ 174 (370)
+....+++.|+++|+..=+...|-.++.-+..+|| -+.+..++--.+|++.|-+
T Consensus 145 e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~yG-~tpegmVeSAle~~~i~e~ 198 (606)
T PRK00694 145 EKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQRYG-DTIEGMVYSALEYIEVCEK 198 (606)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhC-CCHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999998886 3444567777777776543
No 220
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=21.62 E-value=1.7e+02 Score=25.47 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=33.4
Q ss_pred HHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEE
Q 017505 86 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHV 138 (370)
Q Consensus 86 i~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~v 138 (370)
++.++++|++.+=+...+...... . -...+++.+.++++||++..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~-~-------~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDE-K-------DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTH-H-------HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCccccc-c-------hHHHHHHHHHHHHcCCeEEE
Confidence 478899999998887765544322 1 35678999999999999554
No 221
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.53 E-value=3e+02 Score=26.47 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=43.1
Q ss_pred CChhhhHHHHHHHHHHHHcCCeeEEeccCC-CC-c---Hh--HHhhhC-----------CCCCchhHHHHHHHHHHHHHH
Q 017505 114 VNPKGLQYYNNLINELISYGIQPHVTLHHF-DL-P---QA--LEDEYG-----------GWINRTIVKDFTAYADVCFRQ 175 (370)
Q Consensus 114 ~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~-~~-P---~w--l~~~~g-----------gw~~~~~~~~f~~ya~~v~~~ 175 (370)
+|++-+--..++|+.|++.|++.++.++-. .. | .. +....+ -++||+..+.|.+-....+..
T Consensus 68 ~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~ 147 (292)
T cd06595 68 WNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEK 147 (292)
T ss_pred EChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHh
Confidence 454455556789999999999988776522 11 1 11 111111 256666655543333333333
Q ss_pred hCCCceeEEEecCCccc
Q 017505 176 FGDRVSYWTTVNEPNAF 192 (370)
Q Consensus 176 ~~d~V~~w~t~NEp~~~ 192 (370)
+| -.-.|.=+|||...
T Consensus 148 ~G-idg~W~D~~E~~~~ 163 (292)
T cd06595 148 QG-VDFWWLDWQQGNRT 163 (292)
T ss_pred cC-CcEEEecCCCCccc
Confidence 33 23467889999754
No 222
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=21.53 E-value=2.5e+02 Score=21.54 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=31.7
Q ss_pred HHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEec
Q 017505 87 KLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (370)
Q Consensus 87 ~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (370)
+.++.+|+..+|-| .. . -+.+-+.+++..++ .|..+.+|.
T Consensus 27 ~~~~~~G~~~iRGS-------s~-r-----gg~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 27 RVLERFGFRTIRGS-------SS-R-----GGARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHcCCCeEEeC-------CC-C-----cHHHHHHHHHHHHH-CCCeEEEeC
Confidence 66899999999999 22 2 34667889999999 888887776
No 223
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=21.51 E-value=4.2e+02 Score=25.10 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=47.0
Q ss_pred CCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHHHhCCCceeEEEecCCc
Q 017505 111 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEPN 190 (370)
Q Consensus 111 ~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~ 190 (370)
+|.+|.++ +++.|+.+.+.|+.-++.+-+-+ - ...-+.+...+..+.+.++-++++..+.-...++
T Consensus 15 dg~iD~~~---~~~~i~~l~~~Gv~gl~v~GstG----------E-~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~ 80 (284)
T cd00950 15 DGSVDFDA---LERLIEFQIENGTDGLVVCGTTG----------E-SPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNN 80 (284)
T ss_pred CCCcCHHH---HHHHHHHHHHcCCCEEEECCCCc----------c-hhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCcc
Confidence 58999555 78999999999999998875421 1 1112356777788888888888887666555443
No 224
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=21.41 E-value=98 Score=27.01 Aligned_cols=56 Identities=18% Similarity=0.292 Sum_probs=39.4
Q ss_pred CcCCccccCcHHHHHH-HHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeE
Q 017505 73 DIACDGYHKYKEDVKL-MADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPH 137 (370)
Q Consensus 73 ~~a~d~y~~~~eDi~l-~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~ 137 (370)
..+|......++||+. ++++|++.+++.+.|+--= ..+-+.++| -+.|+++||.|=
T Consensus 35 y~gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~~p~W--t~d~it~~g-------r~~l~~~giapp 91 (146)
T TIGR02159 35 YSGCPALEVIRQDIRDAVRALGVEVVEVSTSLDPPW--TTDWITEDA-------REKLREYGIAPP 91 (146)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCeEEEeEeeCCCC--ChHHCCHHH-------HHHHHhcCccCC
Confidence 3577888888998854 6778999999888776421 123444444 467899999883
No 225
>PRK10658 putative alpha-glucosidase; Provisional
Probab=21.28 E-value=5.6e+02 Score=28.01 Aligned_cols=102 Identities=17% Similarity=0.254 Sum_probs=60.2
Q ss_pred HHHHHhcCC--CceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCC---CCcHhHHhh---h----
Q 017505 86 VKLMADTGL--DAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHF---DLPQALEDE---Y---- 153 (370)
Q Consensus 86 i~l~~~lG~--~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~---~~P~wl~~~---~---- 153 (370)
++.+++.|+ +++-+.+.|.+-.--++=.+|.+.+---+.+|++|++.|+++++.+.-+ +.|.+-+.. |
T Consensus 289 ~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk~ 368 (665)
T PRK10658 289 IDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLLKR 368 (665)
T ss_pred HHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEEEC
Confidence 466666665 4566666665421101112344444345689999999999998876532 223221110 0
Q ss_pred ------------C-----CCCCchhHHHHHHHHHHHHHHhCCCceeEEEecCC
Q 017505 154 ------------G-----GWINRTIVKDFTAYADVCFRQFGDRVSYWTTVNEP 189 (370)
Q Consensus 154 ------------g-----gw~~~~~~~~f~~ya~~v~~~~~d~V~~w~t~NEp 189 (370)
| -++||+..+.|.+..+.+.+ .| ---+|.=+||+
T Consensus 369 ~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~G-vdgfw~D~gE~ 419 (665)
T PRK10658 369 PDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MG-VDCFKTDFGER 419 (665)
T ss_pred CCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cC-CcEEEecCCce
Confidence 1 16789999999888877554 33 23456677886
No 226
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.23 E-value=1.2e+02 Score=28.62 Aligned_cols=56 Identities=7% Similarity=0.124 Sum_probs=36.2
Q ss_pred cCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhh----hHHHHHHHHHHHHcCCeeEEec
Q 017505 80 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKG----LQYYNNLINELISYGIQPHVTL 140 (370)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~----~~~y~~~i~~l~~~Gi~p~vtL 140 (370)
.++++-|++.+++|.+.+++.- + -.+. +.-+.+. .+..+++.+.++++||...+=.
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~~-~--~~~~--~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLAG-Y--DVYY--EQANNETRRRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEECC-c--cccc--cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 3466778999999999999741 1 1111 1222333 4556778888889998766544
No 227
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=21.11 E-value=90 Score=18.71 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=11.7
Q ss_pred HHHHHHHHHHcCCee
Q 017505 122 YNNLINELISYGIQP 136 (370)
Q Consensus 122 y~~~i~~l~~~Gi~p 136 (370)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 457778888889887
No 228
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=20.96 E-value=2.4e+02 Score=28.78 Aligned_cols=70 Identities=10% Similarity=0.058 Sum_probs=48.5
Q ss_pred CCccccCcHHHHHHHHhcCCCceeecccccccccCCC----C-CCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcH
Q 017505 75 ACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR----G-PVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQ 147 (370)
Q Consensus 75 a~d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~----g-~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~ 147 (370)
..+..+.++++++.+.++|++++.+-. -.++|..+ . ..+++..+.|+...+.|.++|.+. ..+.||..|.
T Consensus 203 P~qt~e~~~~~l~~~~~l~~~~is~y~--L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~-yei~~far~~ 277 (430)
T PRK08208 203 PGQTHASWMESLDQALVYRPEELFLYP--LYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQ-TSMRMFRRND 277 (430)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcc--ccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeE-EeecceecCC
Confidence 344566788899999999988666653 23333310 1 123666889999999999999887 4777777663
No 229
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=20.95 E-value=3.6e+02 Score=27.18 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCCceeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCch
Q 017505 83 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRT 160 (370)
Q Consensus 83 ~eDi~l~~~lG~~~~R~si-~Ws-ri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~ 160 (370)
++.++.|+++|++.+-+++ +-. ++... -|... ..+-..+.++.+++.+..+-++|. +++|.-
T Consensus 111 ~e~l~~l~~~GvnRiSiGvQS~~d~~L~~-lgR~h--~~~~~~~ai~~~~~~~~~v~~DlI-~GlPgq------------ 174 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGVQSLKEDDLKK-LGRTH--DCMQAIKTIEAANTIFPRVSFDLI-YARSGQ------------ 174 (390)
T ss_pred HHHHHHHHHCCCCEEEEECCcCCHHHHHH-cCCCC--CHHHHHHHHHHHHHhCCcEEEEee-cCCCCC------------
Confidence 6899999999999777776 332 33322 23332 134455677888888888888887 677732
Q ss_pred hHHHHHHHHHHHHHHhCCCceeEEEecCCccc
Q 017505 161 IVKDFTAYADVCFRQFGDRVSYWTTVNEPNAF 192 (370)
Q Consensus 161 ~~~~f~~ya~~v~~~~~d~V~~w~t~NEp~~~ 192 (370)
+.+.+.+=++.+.+-=-++|..+...=||+..
T Consensus 175 t~e~~~~~l~~~~~l~p~his~y~L~i~~gT~ 206 (390)
T PRK06582 175 TLKDWQEELKQAMQLATSHISLYQLTIEKGTP 206 (390)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCEEccCCh
Confidence 24455555666655434677777766677654
No 230
>PTZ00445 p36-lilke protein; Provisional
Probab=20.89 E-value=1.6e+02 Score=27.51 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHcCCeeEEeccCCCCcHhHHh-hhCCCCCch---------hHHHHHHHHHHHHHHhCCCceeEEEecCC
Q 017505 120 QYYNNLINELISYGIQPHVTLHHFDLPQALED-EYGGWINRT---------IVKDFTAYADVCFRQFGDRVSYWTTVNEP 189 (370)
Q Consensus 120 ~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~-~~ggw~~~~---------~~~~f~~ya~~v~~~~~d~V~~w~t~NEp 189 (370)
+.-+.+++.|++.||+.+++= ||. -+.. .-|||.++. ..+.|..+.+.+-+ .| ---..+||-..
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D--~Dn--TlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~-~~-I~v~VVTfSd~ 102 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASD--FDL--TMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN-SN-IKISVVTFSDK 102 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEec--chh--hhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHH-CC-CeEEEEEccch
Confidence 445788899999999998763 222 2222 138999987 45566666555544 11 11223566554
Q ss_pred c
Q 017505 190 N 190 (370)
Q Consensus 190 ~ 190 (370)
.
T Consensus 103 ~ 103 (219)
T PTZ00445 103 E 103 (219)
T ss_pred h
Confidence 4
No 231
>PRK05660 HemN family oxidoreductase; Provisional
Probab=20.83 E-value=3.1e+02 Score=27.43 Aligned_cols=72 Identities=8% Similarity=-0.002 Sum_probs=49.8
Q ss_pred CCccccCcHHHHHHHHhcCCCceeec---c-cccccccCCCCCC-ChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcH
Q 017505 75 ACDGYHKYKEDVKLMADTGLDAYRFS---I-SWSRLIPNGRGPV-NPKGLQYYNNLINELISYGIQPHVTLHHFDLPQ 147 (370)
Q Consensus 75 a~d~y~~~~eDi~l~~~lG~~~~R~s---i-~Wsri~P~g~g~~-n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~ 147 (370)
.....+.++++++.+.++|++++.+. + .++++.......+ +.+.++.|+...+.|.++|.+.. -+.||..|.
T Consensus 169 pgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~y-ei~~fa~~~ 245 (378)
T PRK05660 169 PDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQY-ETSAYAKPG 245 (378)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEe-ecccccCCC
Confidence 33456678889999999998876543 2 4555544311122 24568999999999999998875 666777664
No 232
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=20.82 E-value=1.5e+02 Score=28.24 Aligned_cols=42 Identities=12% Similarity=0.220 Sum_probs=32.4
Q ss_pred ccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHH
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINEL 129 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l 129 (370)
.....+||+.++++|++.+-|++- .. +|.+|. +...++++.+
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L-----~~-dg~vD~---~~~~~Li~~a 113 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVL-----DV-DGHVDM---PRMRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeE-----CC-CCCcCH---HHHHHHHHHh
Confidence 445678999999999999999973 22 588994 4566777777
No 233
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=20.75 E-value=2.2e+02 Score=25.41 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=45.6
Q ss_pred ccCcHHHHHHHHhcCCCceeecc--cccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCC
Q 017505 79 YHKYKEDVKLMADTGLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL 145 (370)
Q Consensus 79 y~~~~eDi~l~~~lG~~~~R~si--~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~ 145 (370)
...|.+-++...+.|.+.+|+.- .|.. .. ..+.+..|...+|.+.... |+..|+.||.
T Consensus 104 i~~~~~~~~~a~~~G~~~lRv~ge~~w~~-----~~--~~~~l~~yE~~ln~~~~~~--~~~~lC~Yd~ 163 (191)
T PF14417_consen 104 IAFWRAALEQALAEGYRGLRVIGEMTWAL-----RS--GWEELLRYEALLNRLFAEH--PFTALCAYDR 163 (191)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEechhhc-----cc--cHHHHHHHHHHHHHHhcCC--CEEEEeccch
Confidence 44566667778888999999986 5652 22 5677999999999999888 8888888774
No 234
>TIGR01748 rhaA L-rhamnose isomerase. This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella.
Probab=20.75 E-value=3.8e+02 Score=27.43 Aligned_cols=84 Identities=12% Similarity=0.142 Sum_probs=56.0
Q ss_pred cHHHHHHHHhcCCCceeecc--cccccccCCCCCCC--hhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhC-CC
Q 017505 82 YKEDVKLMADTGLDAYRFSI--SWSRLIPNGRGPVN--PKGLQYYNNLINELISYGIQPHVTLHHFDLPQALEDEYG-GW 156 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si--~Wsri~P~g~g~~n--~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~g-gw 156 (370)
..+|++.+.++---.-|+++ .|. +.+ ..+| +-..++|...++.++++||..=+.-.-|..|.. ++| ..
T Consensus 71 l~~D~~~~~~L~pg~~~vnLH~~y~--~~d--~~vdrd~~~p~hf~~w~~~Ak~~glglDfNpn~Fsh~~~---k~G~SL 143 (414)
T TIGR01748 71 LRADLEKAMSLIPGKHRLNLHAIYL--ETD--EPVSRDEIKPEHFKNWVEWAKANGLGLDFNPTCFSHPLS---ADGFTL 143 (414)
T ss_pred HHHHHHHHHHhcCCCCceeeecccc--cCC--CcccccccCcccHHHHHHHHHHcCCCcCcCcccCCCccc---cCCCcc
Confidence 36899999888777777776 786 322 1232 223578999999999999987766555666643 334 34
Q ss_pred CCc--hhHHHHHHHHHHH
Q 017505 157 INR--TIVKDFTAYADVC 172 (370)
Q Consensus 157 ~~~--~~~~~f~~ya~~v 172 (370)
.+| ++.+.+.+-...|
T Consensus 144 shpD~~iR~fwI~H~~~c 161 (414)
T TIGR01748 144 SHPDDSIRQFWIDHCKAS 161 (414)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 444 4777777765544
No 235
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=20.55 E-value=3e+02 Score=26.73 Aligned_cols=74 Identities=14% Similarity=0.124 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHcCCe--eEEe---------------ccCCCCcHhHHhhhCCCCCc-h-hHHHHHHHHHHHHHHhCCC
Q 017505 119 LQYYNNLINELISYGIQ--PHVT---------------LHHFDLPQALEDEYGGWINR-T-IVKDFTAYADVCFRQFGDR 179 (370)
Q Consensus 119 ~~~y~~~i~~l~~~Gi~--p~vt---------------L~H~~~P~wl~~~~ggw~~~-~-~~~~f~~ya~~v~~~~~d~ 179 (370)
.+.|.++++.|++.||+ +++. +++-.+|.|+.++....... + ..+.=.+||....+.+.+.
T Consensus 188 ~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~ 267 (296)
T PRK09432 188 VESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKLVGASIAMDMVKILSRE 267 (296)
T ss_pred hHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 34567888999999855 2222 45678999999887666443 2 2223344555555554332
Q ss_pred -c--eeEEEecCCccc
Q 017505 180 -V--SYWTTVNEPNAF 192 (370)
Q Consensus 180 -V--~~w~t~NEp~~~ 192 (370)
| -+..|+|-+...
T Consensus 268 gv~GvH~yt~n~~~~~ 283 (296)
T PRK09432 268 GVKDFHFYTLNRAELT 283 (296)
T ss_pred CCCEEEEecCCChHHH
Confidence 3 234478877654
No 236
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=20.54 E-value=2.7e+02 Score=27.67 Aligned_cols=62 Identities=21% Similarity=0.328 Sum_probs=43.2
Q ss_pred cHHHHHHHHhcCCCceeeccc----ccccc----cC----C----CCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCC
Q 017505 82 YKEDVKLMADTGLDAYRFSIS----WSRLI----PN----G----RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDL 145 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~si~----Wsri~----P~----g----~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~ 145 (370)
.++-|+.|+..++|.+.+=+. |+ |+ |+ | .|.+-++ =++++|+.++++||++|.-+ |+
T Consensus 20 ik~~Id~ma~~KlN~lh~HltDd~~~r-le~~~~P~Lt~~ga~~~~~~YT~~---di~eiv~yA~~rgI~vIPEI---D~ 92 (348)
T cd06562 20 IKRTIDAMAYNKLNVLHWHITDSQSFP-LESPSYPELSKKGAYSPSEVYTPE---DVKEIVEYARLRGIRVIPEI---DT 92 (348)
T ss_pred HHHHHHHHHHhCCcEEEEeEEcCCCce-EeeCCCchhhhccCcCCCceECHH---HHHHHHHHHHHcCCEEEEec---cC
Confidence 566789999999999876552 32 22 21 1 1234433 47899999999999999877 57
Q ss_pred cHhHH
Q 017505 146 PQALE 150 (370)
Q Consensus 146 P~wl~ 150 (370)
|....
T Consensus 93 PGH~~ 97 (348)
T cd06562 93 PGHTG 97 (348)
T ss_pred chhhH
Confidence 76543
No 237
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=20.50 E-value=1e+02 Score=28.23 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=21.2
Q ss_pred chHHHHH-HHHHHHHHhhhhccccCCcCCCCCCCeeeeecch
Q 017505 2 MLRLSFL-LMYLLNLATSALTAVEYSKNDFPPGFLFGASTSA 42 (370)
Q Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fp~~FlwG~atsa 42 (370)
|-||+++ +++|+++|.+.+....- +.|-|..+.++
T Consensus 1 mk~i~~l~l~lll~~C~~~~~~~~~------~~~~W~~~~~~ 36 (216)
T PF11153_consen 1 MKKILLLLLLLLLTGCSTNPNEPLQ------PYFEWRFGVAA 36 (216)
T ss_pred ChHHHHHHHHHHHHhhcCCCccCCC------CCCccEEEEec
Confidence 5667665 45567777666554211 66777777664
No 238
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.50 E-value=3.3e+02 Score=28.04 Aligned_cols=98 Identities=15% Similarity=0.208 Sum_probs=62.5
Q ss_pred cCcHHHHHHHHhcCCCceeeccc-c------cccccCCC---CCC-ChhhhHHHHHHHHHHHHcCCeeEEecc-------
Q 017505 80 HKYKEDVKLMADTGLDAYRFSIS-W------SRLIPNGR---GPV-NPKGLQYYNNLINELISYGIQPHVTLH------- 141 (370)
Q Consensus 80 ~~~~eDi~l~~~lG~~~~R~si~-W------sri~P~g~---g~~-n~~~~~~y~~~i~~l~~~Gi~p~vtL~------- 141 (370)
+...+-++.+..||+|++=+.+. + |.+.|.-. |.. -..|.+-...+|++.+++||+++.=+.
T Consensus 64 ~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~ 143 (418)
T COG1649 64 QELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRMAPP 143 (418)
T ss_pred HHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcccCCC
Confidence 34677789999999999987762 2 22333311 111 124566788999999999999764221
Q ss_pred ----CCCCcHhHHhh--------hCC-----CC---CchhHHHHHHHHHHHHHHhC
Q 017505 142 ----HFDLPQALEDE--------YGG-----WI---NRTIVKDFTAYADVCFRQFG 177 (370)
Q Consensus 142 ----H~~~P~wl~~~--------~gg-----w~---~~~~~~~f~~ya~~v~~~~~ 177 (370)
|-..|.|+..+ .+| |. .|++.+...+-+..++++|.
T Consensus 144 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Yd 199 (418)
T COG1649 144 TSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYD 199 (418)
T ss_pred CChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCC
Confidence 11234444332 234 33 35777888888888999996
No 239
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=20.46 E-value=1.8e+02 Score=26.09 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=48.3
Q ss_pred CCcCCccccCcHHHHHHHHhcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEec
Q 017505 72 GDIACDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (370)
Q Consensus 72 ~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (370)
...+.|.+..-..+++.+.++.++.++++-++.+=... |...-+..+.++..+++.|++++++=
T Consensus 146 ~~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~-----~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 146 VRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIET-----DPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred CeEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhc-----ChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 34677878888888999999999999998776553322 13335678889999999999988763
No 240
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=20.43 E-value=8.3e+02 Score=24.09 Aligned_cols=137 Identities=15% Similarity=0.120 Sum_probs=76.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCCCcHh----------HHhhhC-----CCCCc---hhHHHHHHHHHHH
Q 017505 111 RGPVNPKGLQYYNNLINELISYGIQPHVTLHHFDLPQA----------LEDEYG-----GWINR---TIVKDFTAYADVC 172 (370)
Q Consensus 111 ~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~w----------l~~~~g-----gw~~~---~~~~~f~~ya~~v 172 (370)
.+-++.+.+..++++.++++++|-..++=|.|.+.-.. ...... ..+.. ++++.|.+=|+.+
T Consensus 72 ~~~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a 151 (337)
T PRK13523 72 LGIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRA 151 (337)
T ss_pred eecCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 34568888999999999999999999999999643110 000000 01111 4666777655555
Q ss_pred HHHhC-CCceeEEEecCCccccccccccCCC-CCCC--CCCcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHccCCC
Q 017505 173 FRQFG-DRVSYWTTVNEPNAFANLGYDYGIA-PPQR--CSSINHCSRGNSSTEPYITVHHVLLAHASVARLYRKKYQDKQ 248 (370)
Q Consensus 173 ~~~~~-d~V~~w~t~NEp~~~~~~gy~~g~~-~Pg~--~~~~~~~~~~~~~~~~~qa~hnlllAHA~Av~~~re~~~~~~ 248 (370)
.+. | |-|. +.+-+||+...| -|.. +.+. .+- .+-|-++--.+.++.+|+..
T Consensus 152 ~~a-GfDgVe---------ih~ahGyLl~qFlSp~~N~RtD~----yGG-------slenR~Rf~~eii~~ir~~~---- 206 (337)
T PRK13523 152 KEA-GFDVIE---------IHGAHGYLINEFLSPLSNKRTDE----YGG-------SPENRYRFLREIIDAVKEVW---- 206 (337)
T ss_pred HHc-CCCEEE---------EccccchHHHHhcCCccCCcCCC----CCC-------CHHHHHHHHHHHHHHHHHhc----
Confidence 442 3 3222 335567877655 2322 1111 111 23444444556777777753
Q ss_pred CcceEEeeeCCccccCCCcHHHHH
Q 017505 249 RGYIGVNIFAFGLLPLTNSTEDAI 272 (370)
Q Consensus 249 ~~kIG~~~~~~~~yP~s~~p~D~~ 272 (370)
+..||+-++.....+...+++|..
T Consensus 207 ~~~v~vRis~~d~~~~G~~~~e~~ 230 (337)
T PRK13523 207 DGPLFVRISASDYHPGGLTVQDYV 230 (337)
T ss_pred CCCeEEEecccccCCCCCCHHHHH
Confidence 246888777654444434566653
No 241
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=20.36 E-value=3.1e+02 Score=27.80 Aligned_cols=91 Identities=19% Similarity=0.370 Sum_probs=54.8
Q ss_pred hcCCCceeecccccccccCCCCCCChhhhHHHHHHH--HHHHHcCCeeEEeccCCCCcHhHHhhh---CC---CCCchhH
Q 017505 91 DTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNNLI--NELISYGIQPHVTLHHFDLPQALEDEY---GG---WINRTIV 162 (370)
Q Consensus 91 ~lG~~~~R~si~Wsri~P~g~g~~n~~~~~~y~~~i--~~l~~~Gi~p~vtL~H~~~P~wl~~~~---gg---w~~~~~~ 162 (370)
++|+...|+-|.=.+.-- .|..|. +|+++= ...+..|+.++.+- |..|.|+.... || -+.+
T Consensus 77 ~lg~si~Rv~I~~ndfsl--~g~~d~----w~kels~Ak~~in~g~ivfASP--WspPa~Mktt~~~ngg~~g~Lk~--- 145 (433)
T COG5520 77 QLGFSILRVPIDSNDFSL--GGSADN----WYKELSTAKSAINPGMIVFASP--WSPPASMKTTNNRNGGNAGRLKY--- 145 (433)
T ss_pred ccCceEEEEEeccccccc--CCCcch----hhhhcccchhhcCCCcEEEecC--CCCchhhhhccCcCCccccccch---
Confidence 578888888876555322 255552 344332 33667888888776 88999986431 33 3443
Q ss_pred HHHHHHHHH---HHHHhCC---CceeEEEecCCccc
Q 017505 163 KDFTAYADV---CFRQFGD---RVSYWTTVNEPNAF 192 (370)
Q Consensus 163 ~~f~~ya~~---v~~~~~d---~V~~w~t~NEp~~~ 192 (370)
+.|+.||.. .+..+++ -+.+--+=|||...
T Consensus 146 e~Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~ 181 (433)
T COG5520 146 EKYADYADYLNDFVLEMKNNGVNLYALSVQNEPDYA 181 (433)
T ss_pred hHhHHHHHHHHHHHHHHHhCCCceeEEeeccCCccc
Confidence 445555544 4444544 35566789999864
No 242
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=20.32 E-value=1.3e+02 Score=29.42 Aligned_cols=53 Identities=15% Similarity=0.286 Sum_probs=35.1
Q ss_pred cHHHHHHHHhcCCCceeec----ccc---cccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEec
Q 017505 82 YKEDVKLMADTGLDAYRFS----ISW---SRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTL 140 (370)
Q Consensus 82 ~~eDi~l~~~lG~~~~R~s----i~W---sri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL 140 (370)
.+|.++.||++|++.+-.. ++. .++.|. ..+ .+-+.+.++.+++.||+...++
T Consensus 142 ~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~---~~s---~~~~l~~i~~a~~~Gi~v~~~~ 201 (340)
T TIGR03699 142 LREVLERLKEAGLDSIPGGGAEILSDRVRKIISPK---KIS---SEEWLEVMETAHKLGLPTTATM 201 (340)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCC---CCC---HHHHHHHHHHHHHcCCCcccee
Confidence 3889999999999977421 111 112222 122 5557899999999999876554
No 243
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=20.22 E-value=2.9e+02 Score=29.86 Aligned_cols=54 Identities=13% Similarity=0.265 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCeeEEeccCCCCcHhHHhhhCCCCCchhHHHHHHHHHHHHH
Q 017505 120 QYYNNLINELISYGIQPHVTLHHFDLPQALEDEYGGWINRTIVKDFTAYADVCFR 174 (370)
Q Consensus 120 ~~y~~~i~~l~~~Gi~p~vtL~H~~~P~wl~~~~ggw~~~~~~~~f~~ya~~v~~ 174 (370)
+....+++.|+++|+..=+...|-.++.-+.++|| -+.+..++--.+|++.|-+
T Consensus 141 e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~yg-~tpe~mVeSAle~~~i~e~ 194 (611)
T PRK02048 141 DRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRYG-DTPEGMVESCMEFLRICVE 194 (611)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhC-CChHHHHHHHHHHHHHHHH
Confidence 46677999999999999999999999999998886 3445577777777776643
No 244
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=20.20 E-value=2.5e+02 Score=28.87 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=49.7
Q ss_pred CccccCcHHHHHHHHhcCCCceeec----ccccc-cccC-CC-CCCC-hhhhHHHHHHHHHHHHcCCeeEEeccCCCCcH
Q 017505 76 CDGYHKYKEDVKLMADTGLDAYRFS----ISWSR-LIPN-GR-GPVN-PKGLQYYNNLINELISYGIQPHVTLHHFDLPQ 147 (370)
Q Consensus 76 ~d~y~~~~eDi~l~~~lG~~~~R~s----i~Wsr-i~P~-g~-g~~n-~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~~P~ 147 (370)
....+.++++++.+.++|++.+.+- ..|.+ .+.. ++ ..++ .+.++.|...++.|.++|.++ ..+.||..|.
T Consensus 215 gqt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~-~~~~~far~~ 293 (453)
T PRK13347 215 HQTVESFRETLDKVIALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP-IGLDHFALPD 293 (453)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE-EeccceeCCC
Confidence 3456778899999999999877653 24532 1110 11 1223 456889999999999999988 4888988874
No 245
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=20.00 E-value=3.7e+02 Score=23.90 Aligned_cols=57 Identities=12% Similarity=0.052 Sum_probs=37.6
Q ss_pred HHHhcCCCceeeccc---ccccccCCCCCCChhhhHHHHHHHHHHHHcCCeeEEeccCCC
Q 017505 88 LMADTGLDAYRFSIS---WSRLIPNGRGPVNPKGLQYYNNLINELISYGIQPHVTLHHFD 144 (370)
Q Consensus 88 l~~~lG~~~~R~si~---Wsri~P~g~g~~n~~~~~~y~~~i~~l~~~Gi~p~vtL~H~~ 144 (370)
+.+++|++.+.+.+. ++.+.-..+.......-..|..+.+.+++.|+..++|=+|.+
T Consensus 47 ~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~d 106 (202)
T cd01990 47 LAKEIGIRHEVIETDELDDPEFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNAD 106 (202)
T ss_pred HHHHcCCcEEEEeCCccccHHHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 347899999988876 333321111122223345688888899999999999988754
Done!