Query 017506
Match_columns 370
No_of_seqs 145 out of 868
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 09:10:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00029 hypothetical protein; 100.0 9E-89 2E-93 688.2 18.4 221 102-347 5-225 (487)
2 COG0397 Uncharacterized conser 100.0 1.1E-85 2.4E-90 659.1 16.2 223 101-347 4-226 (488)
3 PF02696 UPF0061: Uncharacteri 100.0 1.5E-84 3.2E-89 657.5 16.5 202 126-337 10-217 (487)
4 KOG2542 Uncharacterized conser 100.0 3.8E-42 8.2E-47 341.0 3.0 144 209-368 2-148 (500)
5 KOG2542 Uncharacterized conser 98.0 1.2E-06 2.6E-11 89.3 -1.0 127 224-356 1-127 (500)
6 PF06293 Kdo: Lipopolysacchari 63.2 24 0.00052 32.0 6.4 80 245-337 57-140 (206)
7 PF06891 P2_Phage_GpR: P2 phag 52.2 42 0.00092 29.5 5.9 73 288-360 29-108 (135)
8 PF08757 CotH: CotH protein; 47.3 21 0.00046 33.4 3.5 27 244-270 46-72 (323)
9 PF12860 PAS_7: PAS fold 38.6 26 0.00057 28.0 2.4 76 144-219 14-99 (115)
10 PRK13799 unknown domain/N-carb 38.5 30 0.00065 37.0 3.4 67 192-277 238-307 (591)
11 PRK02561 psbF cytochrome b559 36.1 15 0.00032 27.6 0.5 14 255-268 21-34 (44)
12 KOG2420 Phosphatidylserine dec 32.7 44 0.00094 34.8 3.3 60 155-228 115-182 (382)
13 TIGR02172 Fb_sc_TIGR02172 Fibr 32.0 80 0.0017 29.3 4.7 30 245-274 38-67 (226)
14 CHL00039 psbF photosystem II p 28.2 24 0.00053 25.9 0.5 15 255-269 16-30 (39)
15 COG4136 ABC-type uncharacteriz 27.5 28 0.00061 33.2 0.9 29 231-263 160-188 (213)
16 PF13426 PAS_9: PAS domain; PD 27.4 40 0.00086 24.9 1.6 34 145-178 11-44 (104)
17 cd07571 ALP_N-acyl_transferase 27.4 29 0.00062 32.8 1.0 19 220-239 244-262 (270)
18 TIGR02579 cas_csx3 CRISPR-asso 26.9 22 0.00048 29.9 0.1 52 150-203 12-64 (83)
19 KOG2444 WD40 repeat protein [G 23.8 71 0.0015 31.5 2.9 52 254-311 101-161 (238)
20 cd02784 MopB_CT_PHLH The MopB_ 22.5 93 0.002 27.5 3.2 53 146-203 38-101 (137)
21 PRK15123 lipopolysaccharide co 22.5 82 0.0018 30.5 3.1 81 245-337 74-160 (268)
22 PRK01723 3-deoxy-D-manno-octul 22.4 5.1E+02 0.011 24.2 8.2 78 245-336 86-163 (239)
23 PRK13590 putative bifunctional 20.4 98 0.0021 33.2 3.4 68 192-276 238-306 (591)
No 1
>PRK00029 hypothetical protein; Validated
Probab=100.00 E-value=9e-89 Score=688.18 Aligned_cols=221 Identities=48% Similarity=0.796 Sum_probs=206.5
Q ss_pred cccCcccccccccCCCCCCCCCCcccccCcceeecCCCCCCCCCeEEEeCHHHHHHCCCCccCCCCCChhhhccCCcCCC
Q 017506 102 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLA 181 (370)
Q Consensus 102 l~~l~~~n~f~~~LP~D~~~~~~~R~V~~~~ys~v~P~p~~~~P~Lv~~n~~la~~LGLd~~~~~~~~~~~~~sGn~~~~ 181 (370)
+..++|+|+|.+. ++.||++|.|++ +++|+|+++|+++|++||||++++++++++++|+||.+++
T Consensus 5 ~~~~~~~~~~~~l--------------~~~~~~~v~p~~-~~~p~l~~~n~~la~~Lgld~~~~~~~~~~~~~sG~~~~~ 69 (487)
T PRK00029 5 LLALPFDNRFARL--------------GPAFYTRVAPTP-FPAPRLRFRNDELAALLGLDPEELDDPEFAEVFGGNALLP 69 (487)
T ss_pred cccCCCCCCHhhc--------------CccceeecCCcc-CCCCEEEEeCHHHHHHcCCCchhcCCHHHHHHhcCCCCCC
Confidence 3445677777653 359999999996 9999999999999999999999999999999999999999
Q ss_pred CCccchhhcccCCCCCCCCcCccccccccceeecCCCceeEeeeccCCCCCCccCCCCccccchhhHHHHHHHhhhhcCC
Q 017506 182 GAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGI 261 (370)
Q Consensus 182 g~~P~Aq~YaGHQFG~fagQLGDGRAilLGEv~~~~G~r~ELQLKGAG~TPYSR~gDGRAVLRSSIREyL~SEAMhaLGI 261 (370)
|+.|+||||+|||||+|||||||||||+|||+++++|++|||||||||+|||||+|||||||||||||||||||||+|||
T Consensus 70 g~~P~A~~YaGHQFG~~~pqLGDGRailLGEv~~~~g~~~dlqLKGsG~TPySR~gDGRAvLrssiREyL~SEAMhaLGI 149 (487)
T PRK00029 70 GMEPLAMVYHGHQFGVYNPQLGDGRGILLGEVRDADGRLYDLQLKGAGRTPYSRMGDGRAVLRSSIREYLASEAMHALGI 149 (487)
T ss_pred CcchHHHHHhcccCCCCCCCCCCcceEEEEEEECCCCCEEEEeccCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEecCCeeeeccccCCCCCCCCceeEEeeeccceeeechhhhhhcCCCCHHHHHHHHHHHHHhhCCcccccCC
Q 017506 262 PTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNK 341 (370)
Q Consensus 262 PTTRALaLV~Sge~V~Re~~y~gn~~~EpgAIv~RvApShIRfGsFE~fa~r~~~d~~~Lr~LaDyvI~~hfP~~~~~~~ 341 (370)
|||||||||+||++|+|+ +.||||||||||+|||||||||||+++ ++.+.||+|+||||++|||++.+.+
T Consensus 150 PTTRaLalv~tge~V~R~-------~~e~gAvl~RvA~ShiRfGtFe~~a~~--~~~~~l~~L~dy~I~~hyP~~~~~~- 219 (487)
T PRK00029 150 PTTRALSLVETGEPVYRE-------SPERGAVLTRVAPSHIRFGTFERFAYR--GDPELLRQLADYVIARHYPELADAE- 219 (487)
T ss_pred CccceEEEEecCCceecC-------CCCceeEEEEecCccccceeehhhhhc--CCHHHHHHHHHHHHHHHCccccccc-
Confidence 999999999999999999 799999999999999999999999999 6899999999999999999997643
Q ss_pred CCceec
Q 017506 342 SESLSF 347 (370)
Q Consensus 342 ~~~~~~ 347 (370)
++|+.|
T Consensus 220 ~~y~~~ 225 (487)
T PRK00029 220 DPYLAL 225 (487)
T ss_pred cHHHHH
Confidence 334433
No 2
>COG0397 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.1e-85 Score=659.07 Aligned_cols=223 Identities=45% Similarity=0.720 Sum_probs=212.1
Q ss_pred ccccCcccccccccCCCCCCCCCCcccccCcceeecCCCCCCCCCeEEEeCHHHHHHCCCCccCCCCCChhhhccCCcCC
Q 017506 101 ALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPL 180 (370)
Q Consensus 101 ~l~~l~~~n~f~~~LP~D~~~~~~~R~V~~~~ys~v~P~p~~~~P~Lv~~n~~la~~LGLd~~~~~~~~~~~~~sGn~~~ 180 (370)
.+..++|++.|.++. +.||+.|.|+| +++|+|+++|+++|..||||+++++++.|+++|+|+.++
T Consensus 4 ~~~~~~~~~r~~~l~--------------~~~~t~v~p~p-~~~~~L~~~n~~la~~LgL~~~~~~~~~~~~~f~G~~v~ 68 (488)
T COG0397 4 PQAALKFDPRFASLG--------------GEFYTPVTPAP-FPNPRLRWRNDRLAATLGLDPSLLDDEAFAEVFGGFQVL 68 (488)
T ss_pred cccccCccHHHHhhc--------------hhhhcCcCCcc-CCCceeeeeCHhHHHhcCCChHhccChhHHHHhccCCCC
Confidence 345677888888765 49999999996 999999999999999999999999999999999999999
Q ss_pred CCCccchhhcccCCCCCCCCcCccccccccceeecCCCceeEeeeccCCCCCCccCCCCccccchhhHHHHHHHhhhhcC
Q 017506 181 AGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLG 260 (370)
Q Consensus 181 ~g~~P~Aq~YaGHQFG~fagQLGDGRAilLGEv~~~~G~r~ELQLKGAG~TPYSR~gDGRAVLRSSIREyL~SEAMhaLG 260 (370)
+++.|+||+|+|||||+|||||||||+|+|||+.+++|+++||||||||+|||||+|||||||||+|||||||||||+||
T Consensus 69 ~~~~plA~~Y~GhQFG~~~~qLGDGR~ilLgE~~~~~G~~~diqlKGaG~TPySR~gDGRAvLrssiRE~l~SEAmh~LG 148 (488)
T COG0397 69 NGAPPLAMRYSGHQFGVYNPQLGDGRGFLLGELRGADGELFDIQLKGAGRTPYSRGGDGRAVLRSSIREYLASEALHALG 148 (488)
T ss_pred CCCChhhhhhcccccccccCccCCceeeeeeeeecCCCcEEEEEeccCCCCCccccCCcchhhhhhHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeEEEecCCeeeeccccCCCCCCCCceeEEeeeccceeeechhhhhhcCCCCHHHHHHHHHHHHHhhCCcccccC
Q 017506 261 IPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMN 340 (370)
Q Consensus 261 IPTTRALaLV~Sge~V~Re~~y~gn~~~EpgAIv~RvApShIRfGsFE~fa~r~~~d~~~Lr~LaDyvI~~hfP~~~~~~ 340 (370)
||||||||||+||++|+|+ +.||||||||||+|||||||||+|+++ ++.+.||+|+||||+||||++....
T Consensus 149 IpTTRaL~lv~tg~~v~Re-------~~ep~Avl~R~A~ShIRfGtFe~f~~~--~~~e~l~~LaD~vI~~~~p~~~~~~ 219 (488)
T COG0397 149 IPTTRALSLVETGEPVQRE-------DEEPSAVLTRLAPSHIRFGTFERFAYR--DRRDLLRQLADHVIEHYFPDLADES 219 (488)
T ss_pred CCCcceeeeecCCCceecc-------ccccceEEEEecccceeeeccchhhhc--CChHHHHHHHHHHHHHhchhhhccC
Confidence 9999999999999999999 689999999999999999999999999 7899999999999999999999766
Q ss_pred CCCceec
Q 017506 341 KSESLSF 347 (370)
Q Consensus 341 ~~~~~~~ 347 (370)
+++|+.|
T Consensus 220 e~~Y~~~ 226 (488)
T COG0397 220 ERPYAAL 226 (488)
T ss_pred cchHHHH
Confidence 6666654
No 3
>PF02696 UPF0061: Uncharacterized ACR, YdiU/UPF0061 family; InterPro: IPR003846 The proteins in this entry are functionally uncharacterised.
Probab=100.00 E-value=1.5e-84 Score=657.51 Aligned_cols=202 Identities=59% Similarity=0.951 Sum_probs=190.7
Q ss_pred ccccCcceeecCCCCCCC---CCeEEEeCHHHHHHCCCCccCCCCCChhhh-ccCCcCCCC-CccchhhcccCCCCCCCC
Q 017506 126 REVLHACYTKVSPSAEVE---NPQLVAWSESVADSLELDPKEFERPDFPLF-FSGATPLAG-AVPYAQCYGGHQFGMWAG 200 (370)
Q Consensus 126 R~V~~~~ys~v~P~p~~~---~P~Lv~~n~~la~~LGLd~~~~~~~~~~~~-~sGn~~~~g-~~P~Aq~YaGHQFG~fag 200 (370)
+.+...+|+.+.|++ +. +|+||++|+.+|++|||+++++++++++++ ++|+.+++| +.|+||||+|||||+|+|
T Consensus 10 ~~~~~~~~~~~~p~~-~~~~~~p~lv~~n~~la~~Lgl~~~~~~~~~~~~~~~~g~~~~~g~~~p~A~~YaGHQFG~~~~ 88 (487)
T PF02696_consen 10 SALLSLFYSFVSPVP-PAPFPNPRLVAFNDDLAEELGLDPSELESPEFAEFVFSGNKLLPGSAEPLAQAYAGHQFGQFAP 88 (487)
T ss_pred HhhhccCCceecccc-CCCCCCCEEEEECHHHHHHcCCChhHcCChhHHHHhhhhhccCCCCcchHHHHHcCCCCCCCCC
Confidence 344567777777775 44 999999999999999999999999999987 899999999 999999999999999999
Q ss_pred cCccccccccceeecCCCceeEeeeccCCCCCCccCCCCccccchhhHHHHHHHhhhhcCCCCcceeEEEecC-Ceeeec
Q 017506 201 QLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTG-KFVTRD 279 (370)
Q Consensus 201 QLGDGRAilLGEv~~~~G~r~ELQLKGAG~TPYSR~gDGRAVLRSSIREyL~SEAMhaLGIPTTRALaLV~Sg-e~V~Re 279 (370)
||||||||+|||+.+++|++|||||||||+|||||+|||||||||||||||||||||+||||||||||||+|+ +.|+|+
T Consensus 89 qLGDGRailLgE~~~~~g~~~dlqLKGaG~TPySR~gDGrAvLrssIREyL~SEAm~aLGIPTTRaLalv~t~~~~v~r~ 168 (487)
T PF02696_consen 89 QLGDGRAILLGEVRDPDGQRWDLQLKGAGRTPYSRGGDGRAVLRSSIREYLCSEAMHALGIPTTRALALVTTGEEPVRRE 168 (487)
T ss_pred ccCCcceEEeeeeecCCCcEEEEeccCCCCCCCccCCCCcchHHHHHHHHHHHHHHHhCCCCccceeEEEEcCCeeEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 788888
Q ss_pred cccCCCCCCCCceeEEeeeccceeeechhhhhhcCCCCHHHHHHHHHHHHHhhCCccc
Q 017506 280 MFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIE 337 (370)
Q Consensus 280 ~~y~gn~~~EpgAIv~RvApShIRfGsFE~fa~r~~~d~~~Lr~LaDyvI~~hfP~~~ 337 (370)
+.||||||||||+|||||||||+|+++ ++.+.|++|+||||++|||++.
T Consensus 169 -------~~ep~Avv~RvA~S~iR~GsFe~~~~~--~~~~~l~~L~dy~i~~~~pe~~ 217 (487)
T PF02696_consen 169 -------TPEPGAVVTRVAPSHIRFGSFEYFAYR--GDPEGLRQLADYVIKRHYPEIQ 217 (487)
T ss_pred -------CCCCceEEEeccccceeeeeeehhhhc--CCHHHHHHHHHHHHHHhCCccc
Confidence 689999999999999999999999999 6899999999999999999765
No 4
>KOG2542 consensus Uncharacterized conserved protein (YdiU family) [Function unknown]
Probab=100.00 E-value=3.8e-42 Score=341.01 Aligned_cols=144 Identities=51% Similarity=0.722 Sum_probs=123.7
Q ss_pred ccceeecCCCceeEeeeccCCCCCCccCCCCccccchhhHHHHHHHhhhhcCCCCcceeEEEec-CCeeeeccccCCCCC
Q 017506 209 TLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTT-GKFVTRDMFYDGNPK 287 (370)
Q Consensus 209 lLGEv~~~~G~r~ELQLKGAG~TPYSR~gDGRAVLRSSIREyL~SEAMhaLGIPTTRALaLV~S-ge~V~Re~~y~gn~~ 287 (370)
++|++....|++||+||||+|+|||||++||||||||||||||||||||+||||||||++++.. +..++|. +
T Consensus 2 l~gl~~t~tg~~~e~qlkgag~tpfsrfADgkavLrssirefLcseal~~lgipttra~a~~~legtvaqr~-------~ 74 (500)
T KOG2542|consen 2 LLGLVCTATGERWELQLKGAGPTPFSRFADGKAVLRSSIREFLCSEALFHLGIPTTRAGACVTLEGTVAQRP-------K 74 (500)
T ss_pred ccccCCCcccceeeeeeeccCCCchhhhccchHHhhhhHHHHHHHHHHhhcCCcchhhccccCCCccccccc-------c
Confidence 6788888999999999999999999999999999999999999999999999999999999988 5677676 7
Q ss_pred CCCceeEEeeeccceeeechhhhhhcCCCCHHHHHHHHHHHHHhhCCcccccCCCCceecccCCCCCCccc--cCccccc
Q 017506 288 EEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVD--LTSNKYA 365 (370)
Q Consensus 288 ~EpgAIv~RvApShIRfGsFE~fa~r~~~d~~~Lr~LaDyvI~~hfP~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 365 (370)
.||||||||+||||||||+|++|.++ .++..+.+|.|||++-.|-.......+-|. ++. +.| .|+||||
T Consensus 75 ~epcaVvcr~apswIr~g~f~lf~~~--~~h~gl~~lsdyc~~~~fk~gd~f~s~~~~--~~~-----~gd~~~T~nrya 145 (500)
T KOG2542|consen 75 YEPCAVVCRVAPSWIRFGSFELFKSA--DEHTGLAGLSDYCNDIRFKLGDYFISSFYP--EIQ-----AGDASDTVNRYA 145 (500)
T ss_pred ccceeEEEeecchhhhhhhhHHHhhH--hhhcccccccccchhhhcccCccccccccc--ccc-----cccchhhhhHHH
Confidence 99999999999999999999999999 688999999999998665444333333222 222 556 7999999
Q ss_pred ccc
Q 017506 366 GNS 368 (370)
Q Consensus 366 ~~~ 368 (370)
||-
T Consensus 146 aff 148 (500)
T KOG2542|consen 146 AFF 148 (500)
T ss_pred HHH
Confidence 973
No 5
>KOG2542 consensus Uncharacterized conserved protein (YdiU family) [Function unknown]
Probab=97.96 E-value=1.2e-06 Score=89.26 Aligned_cols=127 Identities=9% Similarity=-0.107 Sum_probs=119.5
Q ss_pred eeccCCCCCCccCCCCccccchhhHHHHHHHhhhhcCCCCcceeEEEecCCeeeeccccCCCCCCCCceeEEeeecccee
Q 017506 224 QLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLR 303 (370)
Q Consensus 224 QLKGAG~TPYSR~gDGRAVLRSSIREyL~SEAMhaLGIPTTRALaLV~Sge~V~Re~~y~gn~~~EpgAIv~RvApShIR 303 (370)
+|+|.+.|+++++.++.++.+++++++.+++-||-|++++++.||.-+...-+++.+.|.+++..|++.+ ++.+
T Consensus 1 ~l~gl~~t~tg~~~e~qlkgag~tpfsrfADgkavLrssirefLcseal~~lgipttra~a~~~legtva------qr~~ 74 (500)
T KOG2542|consen 1 MLLGLVCTATGERWELQLKGAGPTPFSRFADGKAVLRSSIREFLCSEALFHLGIPTTRAGACVTLEGTVA------QRPK 74 (500)
T ss_pred CccccCCCcccceeeeeeeccCCCchhhhccchHHhhhhHHHHHHHHHHhhcCCcchhhccccCCCcccc------cccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999998877 8889
Q ss_pred eechhhhhhcCCCCHHHHHHHHHHHHHhhCCcccccCCCCceecccCCCCCCc
Q 017506 304 FGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSV 356 (370)
Q Consensus 304 fGsFE~fa~r~~~d~~~Lr~LaDyvI~~hfP~~~~~~~~~~~~~~~~~~~~~~ 356 (370)
++...+.++.++.......-.+++.+.+|++.+...|-...+.|.+++++++.
T Consensus 75 ~epcaVvcr~apswIr~g~f~lf~~~~~h~gl~~lsdyc~~~~fk~gd~f~s~ 127 (500)
T KOG2542|consen 75 YEPCAVVCRVAPSWIRFGSFELFKSADEHTGLAGLSDYCNDIRFKLGDYFISS 127 (500)
T ss_pred ccceeEEEeecchhhhhhhhHHHhhHhhhcccccccccchhhhcccCcccccc
Confidence 99999999888778888899999999999999999999999999999998874
No 6
>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane
Probab=63.25 E-value=24 Score=31.98 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=52.2
Q ss_pred hhhHHHHHHHhhhhcCCCCcceeEEEecCCeeeeccccCCCCCCCCceeEEeeeccceeeechhhhhh----cCCCCHHH
Q 017506 245 SSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHAS----RGQEDLDI 320 (370)
Q Consensus 245 SSIREyL~SEAMhaLGIPTTRALaLV~Sge~V~Re~~y~gn~~~EpgAIv~RvApShIRfGsFE~fa~----r~~~d~~~ 320 (370)
-..|||-+.+.|+.+||||.+.++........ ...+.++|+--+...=+-.+ +.. ......+.
T Consensus 57 ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~-----------~~~s~lite~l~~~~~L~~~--~~~~~~~~~~~~~~l 123 (206)
T PF06293_consen 57 RAKREWRNLQRLREAGIPTPEPVAYGERRKGG-----------GYRSYLITEALPGAQDLRDL--LQQWEQLDPSQRREL 123 (206)
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCC-----------ceeEEEEEEeCCCcccHHHH--HHhhcccchhhHHHH
Confidence 47899999999999999999999997552211 12345666655543222211 111 01124678
Q ss_pred HHHHHHHHHHhhCCccc
Q 017506 321 VRTLADYAIRHHFRHIE 337 (370)
Q Consensus 321 Lr~LaDyvI~~hfP~~~ 337 (370)
+++++.++-+-|--++.
T Consensus 124 l~~l~~~i~~lH~~gi~ 140 (206)
T PF06293_consen 124 LRALARLIAKLHDAGIY 140 (206)
T ss_pred HHHHHHHHHHHHHCcCC
Confidence 99999998888866654
No 7
>PF06891 P2_Phage_GpR: P2 phage tail completion protein R (GpR); InterPro: IPR009678 This family consists of P2 phage tail completion protein R (GpR) and similar sequences from related phage. GpR is thought to be a tail completion protein which is essential for stable head joining []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=52.18 E-value=42 Score=29.49 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=51.2
Q ss_pred CCCceeEEee---eccceeeechhhhhhc----CCCCHHHHHHHHHHHHHhhCCcccccCCCCceecccCCCCCCccccC
Q 017506 288 EEPGAIVCRV---AQSFLRFGSYQIHASR----GQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLT 360 (370)
Q Consensus 288 ~EpgAIv~Rv---ApShIRfGsFE~fa~r----~~~d~~~Lr~LaDyvI~~hfP~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (370)
+|.|.|++.- ..||+|+|.++|-+.- -.++.+.|-.++--=++.|=|++..........|+...-|+..+||.
T Consensus 29 v~~G~i~~t~~~~~~s~~~~~~~~Y~~~i~i~df~~~~d~l~~~v~~WL~~nqpdl~~~~~~~~~~f~~di~d~~tadl~ 108 (135)
T PF06891_consen 29 VDNGEIVATGKDPGLSFYRLAEYRYTAVISIEDFPGDPDLLMAPVLAWLRENQPDLNPEKRLDGPTFDVDILDDDTADLS 108 (135)
T ss_pred EeCcEEEECcccCCCCccEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHhcCcccCccccccCceEEEEeCCCCeEEEE
Confidence 4566665543 4789999999985431 12466666665555588888998555667788899999998887763
No 8
>PF08757 CotH: CotH protein; InterPro: IPR014867 Members of this group include the Bacillus subtilis spore coat protein H (CotH). Assembly of CotH requires both CotE and GerE and is reuired for the correct assembly of both inner and outer layers of the coat. CotH appears to be a structural component of the coat being localised at the interface of the 2 coat layers [, , ].
Probab=47.28 E-value=21 Score=33.41 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.9
Q ss_pred chhhHHHHHHHhhhhcCCCCcceeEEE
Q 017506 244 RSSIREFLCSEAMHFLGIPTTRALCLV 270 (370)
Q Consensus 244 RSSIREyL~SEAMhaLGIPTTRALaLV 270 (370)
+|.|||.|+-+.++.+|+||.|+--+.
T Consensus 46 ~s~~R~~l~~~l~~~~g~~~p~~~~v~ 72 (323)
T PF08757_consen 46 PSYMRERLAYDLFRDMGVPAPRARYVE 72 (323)
T ss_pred chHHHHHHHHHHHHHcCCCCcceEEEE
Confidence 799999999999999999999987664
No 9
>PF12860 PAS_7: PAS fold
Probab=38.57 E-value=26 Score=28.03 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=41.0
Q ss_pred CCeEEEeCHHHHHHCCCCccCCCC-CChhhhc---cCCcCCCCCcc---chhhcc-cCC--CCCCCCcCcccccccccee
Q 017506 144 NPQLVAWSESVADSLELDPKEFER-PDFPLFF---SGATPLAGAVP---YAQCYG-GHQ--FGMWAGQLGDGRAITLGEI 213 (370)
Q Consensus 144 ~P~Lv~~n~~la~~LGLd~~~~~~-~~~~~~~---sGn~~~~g~~P---~Aq~Ya-GHQ--FG~fagQLGDGRAilLGEv 213 (370)
+=+|+.+|+.+++.++++.+.+.. ..+.+++ .-...+....+ +++..+ .++ --.+-=.+.|||-+.+-..
T Consensus 14 ~~rl~~~N~~~~~l~~~~~~~~~~G~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgr~l~~~~~ 93 (115)
T PF12860_consen 14 DGRLVFWNQRFRELFGLPPEMLRPGASFRDLLRRLAERGEFPPGDPEAWVRQRLARLRRRQPRSFELRLPDGRWLEVRAQ 93 (115)
T ss_pred CCeEEeEcHHHHHHhCCCHHHhcCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCCceeEEECCCCEEEEEEeE
Confidence 348999999999999999877632 3333333 22222221222 222221 122 2222224677777776666
Q ss_pred ecCCCc
Q 017506 214 LNLKSE 219 (370)
Q Consensus 214 ~~~~G~ 219 (370)
.-++|.
T Consensus 94 ~~~~Gg 99 (115)
T PF12860_consen 94 PLPDGG 99 (115)
T ss_pred ECCCCC
Confidence 655554
No 10
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=38.51 E-value=30 Score=36.98 Aligned_cols=67 Identities=15% Similarity=0.246 Sum_probs=49.9
Q ss_pred cCCCCCCCCcCccccccccceeecC--CCceeEeeeccCCCCCCccCCCCccccchhhHHHHHHHhhhhcCCCCcceeEE
Q 017506 192 GHQFGMWAGQLGDGRAITLGEILNL--KSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCL 269 (370)
Q Consensus 192 GHQFG~fagQLGDGRAilLGEv~~~--~G~r~ELQLKGAG~TPYSR~gDGRAVLRSSIREyL~SEAMhaLGIPTTRALaL 269 (370)
|..||.+.|.=.|+.+|++|-..|. +|.+| ||.+-+=..| -+-++|+..||.+.+.+.|
T Consensus 238 gNv~~~~~g~~~~~p~v~~gSHlDTV~~gG~~----------------DG~~Gv~a~l---~~~~~l~~~~~~~~~~i~v 298 (591)
T PRK13799 238 GNVVGRYKAADDDAKTLITGSHYDTVRNGGKY----------------DGREGIFLAI---ACVKELHEQGERLPFHFEV 298 (591)
T ss_pred CCEEEEcCCCCCCCCeEEEeccccccCCCCcc----------------ccHHHHHHHH---HHHHHHHHcCCCCCCCeEE
Confidence 7778888776678899999987764 44443 8886655555 4557889999999999999
Q ss_pred Eec-CCeee
Q 017506 270 VTT-GKFVT 277 (370)
Q Consensus 270 V~S-ge~V~ 277 (370)
|.. +|.-.
T Consensus 299 i~~~~EEg~ 307 (591)
T PRK13799 299 IAFAEEEGQ 307 (591)
T ss_pred EEecCCCcc
Confidence 855 66543
No 11
>PRK02561 psbF cytochrome b559 subunit beta; Provisional
Probab=36.09 E-value=15 Score=27.61 Aligned_cols=14 Identities=50% Similarity=0.667 Sum_probs=10.7
Q ss_pred hhhhcCCCCcceeE
Q 017506 255 AMHFLGIPTTRALC 268 (370)
Q Consensus 255 AMhaLGIPTTRALa 268 (370)
|.|+|||||-==|.
T Consensus 21 AvhalavPtVfFlG 34 (44)
T PRK02561 21 AVHALGVPTVFFLG 34 (44)
T ss_pred hhhccccCceeecc
Confidence 88999999954433
No 12
>KOG2420 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=32.69 E-value=44 Score=34.83 Aligned_cols=60 Identities=25% Similarity=0.431 Sum_probs=42.6
Q ss_pred HHHCCCCccCCCCCC------hhhhccCCcCCCCCccchhhcccCCCCCCCCcC--ccccccccceeecCCCceeEeeec
Q 017506 155 ADSLELDPKEFERPD------FPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQL--GDGRAITLGEILNLKSERWELQLK 226 (370)
Q Consensus 155 a~~LGLd~~~~~~~~------~~~~~sGn~~~~g~~P~Aq~YaGHQFG~fagQL--GDGRAilLGEv~~~~G~r~ELQLK 226 (370)
+...|.+-+|...++ +.++|.-+. =+|+.|+.+. +++. -||+-+..|++.|. ..| |+|
T Consensus 115 s~~Fg~NL~Ea~~pDl~hY~nlaeFF~RkL-Kpg~RpIdp~---------~piVSPaDGkIL~fG~v~~~---~IE-qVK 180 (382)
T KOG2420|consen 115 ARTFGCNLDEAADPDLTHYRNLAEFFTRKL-KPGTRPIDPA---------SPLVSPADGKILHFGVVEDN---EIE-QVK 180 (382)
T ss_pred hHhhccCchhccCchhhhhhhHHHHHhhcc-CCCCcccCCC---------CceecCCCCcEEEEEEecCc---eee-Eec
Confidence 567787777776664 666776544 5788888862 3344 49999999999753 456 899
Q ss_pred cC
Q 017506 227 GA 228 (370)
Q Consensus 227 GA 228 (370)
|-
T Consensus 181 G~ 182 (382)
T KOG2420|consen 181 GH 182 (382)
T ss_pred Ce
Confidence 84
No 13
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=32.04 E-value=80 Score=29.33 Aligned_cols=30 Identities=40% Similarity=0.530 Sum_probs=25.8
Q ss_pred hhhHHHHHHHhhhhcCCCCcceeEEEecCC
Q 017506 245 SSIREFLCSEAMHFLGIPTTRALCLVTTGK 274 (370)
Q Consensus 245 SSIREyL~SEAMhaLGIPTTRALaLV~Sge 274 (370)
+.-|||-+...++.+|||+-+.+.+...++
T Consensus 38 ~i~~E~~~l~~l~~~glpvP~~~~~~~~~~ 67 (226)
T TIGR02172 38 TIKREFDASRKVFSLGIPTPHPFDLVEDGG 67 (226)
T ss_pred HHHHHHHHHHHHHHcCCCCCceEEEEecCC
Confidence 468899999899999999999999986653
No 14
>CHL00039 psbF photosystem II protein VI
Probab=28.17 E-value=24 Score=25.85 Aligned_cols=15 Identities=40% Similarity=0.377 Sum_probs=11.2
Q ss_pred hhhhcCCCCcceeEE
Q 017506 255 AMHFLGIPTTRALCL 269 (370)
Q Consensus 255 AMhaLGIPTTRALaL 269 (370)
|.|+|+|||-==|.-
T Consensus 16 avh~lavPtvfflGa 30 (39)
T CHL00039 16 AVHGLAVPTVFFLGS 30 (39)
T ss_pred hhhcccCCceeeccH
Confidence 789999999644433
No 15
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=27.49 E-value=28 Score=33.18 Aligned_cols=29 Identities=41% Similarity=0.764 Sum_probs=24.5
Q ss_pred CCCccCCCCccccchhhHHHHHHHhhhhcCCCC
Q 017506 231 TPYSRFADGLAVLRSSIREFLCSEAMHFLGIPT 263 (370)
Q Consensus 231 TPYSR~gDGRAVLRSSIREyL~SEAMhaLGIPT 263 (370)
-||||-. +.||+-.||+..||+ .++||||
T Consensus 160 EPFS~LD---~ALR~qfR~wVFs~~-r~agiPt 188 (213)
T COG4136 160 EPFSRLD---VALRDQFRQWVFSEV-RAAGIPT 188 (213)
T ss_pred CchhHHH---HHHHHHHHHHHHHHH-HhcCCCe
Confidence 3888753 689999999999986 5789999
No 16
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=27.45 E-value=40 Score=24.90 Aligned_cols=34 Identities=9% Similarity=0.136 Sum_probs=25.8
Q ss_pred CeEEEeCHHHHHHCCCCccCCCCCChhhhccCCc
Q 017506 145 PQLVAWSESVADSLELDPKEFERPDFPLFFSGAT 178 (370)
Q Consensus 145 P~Lv~~n~~la~~LGLd~~~~~~~~~~~~~sGn~ 178 (370)
=+++.+|+.+++.+|++.+++....+..++....
T Consensus 11 g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~ 44 (104)
T PF13426_consen 11 GRILYVNPAFERLFGYSREELIGKSISDFFPEED 44 (104)
T ss_dssp SBEEEE-HHHHHHHTS-HHHHTTSBGGGGCSTTS
T ss_pred CcEEehhHHHHHHHCcCHHHHcCCCcccccCccc
Confidence 4889999999999999988877777777776433
No 17
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=27.41 E-value=29 Score=32.78 Aligned_cols=19 Identities=42% Similarity=0.634 Sum_probs=16.8
Q ss_pred eeEeeeccCCCCCCccCCCC
Q 017506 220 RWELQLKGAGKTPYSRFADG 239 (370)
Q Consensus 220 r~ELQLKGAG~TPYSR~gDG 239 (370)
..|+.++. +.|+|+|.||=
T Consensus 244 ~~~i~~~~-~~t~y~~~g~~ 262 (270)
T cd07571 244 VAEVPLRT-GLTPYVRWGDW 262 (270)
T ss_pred EEEeccCC-CCCcceecChH
Confidence 57889888 99999999984
No 18
>TIGR02579 cas_csx3 CRISPR-associated protein, Csx3 family. Members of this family are found encoded in CRISPR-associated (cas) gene clusters, near CRISPR repeats, in the genomes of several different thermophiles: Archaeoglobus fulgidus (archaeal), Aquifex aeolicus (Aquificae), Dictyoglomus thermophilum (Dictyoglomi), and a thermophilic Synechococcus (Cyanobacteria). It is not yet assigned to a specific CRISPR/cas subtype (hence the x designation csx3).
Probab=26.86 E-value=22 Score=29.90 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=32.5
Q ss_pred eCHHHHHHCCCCccCCCCCChhhhccCCcCCCCCccchhhcccCCC-CCCCCcCc
Q 017506 150 WSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQF-GMWAGQLG 203 (370)
Q Consensus 150 ~n~~la~~LGLd~~~~~~~~~~~~~sGn~~~~g~~P~Aq~YaGHQF-G~fagQLG 203 (370)
++++-.+.|.+... ++ .+.--+++|....-=..-+|+.|++|.| +.|.|+||
T Consensus 12 l~p~dl~~~~lP~~-id-~~~gvvIsGrgP~WLy~~Lah~~h~~p~iav~dPrlG 64 (83)
T TIGR02579 12 LVPEDLKQLQPPAG-VN-TRKGVVLSGRGPIWLYGFLVHFYHPTPFVAVYDPRLG 64 (83)
T ss_pred CCHHHHhcccCCcc-cC-CCccEEEeccCcHHHHHHHHHHhCCCceEEEEcCccc
Confidence 55665556655421 22 2223355665543223347999999999 99999998
No 19
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=23.80 E-value=71 Score=31.50 Aligned_cols=52 Identities=27% Similarity=0.250 Sum_probs=39.8
Q ss_pred HhhhhcCCCCcce--eEEEecCCeeeeccccCCCCCCCCceeEEeeeccc-------eeeechhhhh
Q 017506 254 EAMHFLGIPTTRA--LCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSF-------LRFGSYQIHA 311 (370)
Q Consensus 254 EAMhaLGIPTTRA--LaLV~Sge~V~Re~~y~gn~~~EpgAIv~RvApSh-------IRfGsFE~fa 311 (370)
+-|=-+|||++|. +..|......+|-. ..+|.+++.++...- |=+|+=++.+
T Consensus 101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~------n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~ 161 (238)
T KOG2444|consen 101 EESIDLGIPNGRDSSLGCVGAQDGRIRAC------NIKPNKVLGYVGQHNFESGEELIVVGSDEFLK 161 (238)
T ss_pred cccceeccccccccceeEEeccCCceeee------ccccCceeeeeccccCCCcceeEEecCCceEE
Confidence 4566799999999 88888888888884 689999999987654 4455555543
No 20
>cd02784 MopB_CT_PHLH The MopB_CT_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding proteins. This CD is of the PHLH region homologous to the conserved molybdopterin-binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=22.50 E-value=93 Score=27.47 Aligned_cols=53 Identities=25% Similarity=0.240 Sum_probs=34.1
Q ss_pred eEEEeCHHHHHHCCCCccCCCCCChhhhccCCc-----------CCCCCccchhhcccCCCCCCCCcCc
Q 017506 146 QLVAWSESVADSLELDPKEFERPDFPLFFSGAT-----------PLAGAVPYAQCYGGHQFGMWAGQLG 203 (370)
Q Consensus 146 ~Lv~~n~~la~~LGLd~~~~~~~~~~~~~sGn~-----------~~~g~~P~Aq~YaGHQFG~fagQLG 203 (370)
..+.+|++-|+.|||... +.+.+.+... +.+|..-+.+.|+...+|.++...|
T Consensus 38 ~~v~InP~dA~~lGI~dG-----D~V~V~s~~G~i~~~a~vt~~i~pgvV~i~~G~G~~~~~~~~~g~G 101 (137)
T cd02784 38 NAALVSPRTAEALGLLQG-----DVVRIRRGGRTIELPVWIQPGHAEGVVLLALGYGRTHAGKVGNGVG 101 (137)
T ss_pred ceEEECHHHHHHcCCCCC-----CEEEEEeCCeEEEEEEEECCCcCCCEEEEecccCcccCCccccccc
Confidence 358899999999999653 3344444222 2345555667777777777765444
No 21
>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional
Probab=22.50 E-value=82 Score=30.53 Aligned_cols=81 Identities=16% Similarity=0.230 Sum_probs=48.6
Q ss_pred hhhHHHHHHHhhhhcCCCCcceeEEEecCCeeeeccccCCCCCCCCceeEEeeeccceeeechhhhh---hcCC---CCH
Q 017506 245 SSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHA---SRGQ---EDL 318 (370)
Q Consensus 245 SSIREyL~SEAMhaLGIPTTRALaLV~Sge~V~Re~~y~gn~~~EpgAIv~RvApShIRfGsFE~fa---~r~~---~d~ 318 (370)
...|||-+-+.|+.+||||...++....... +....+-+||+-.+..+=+-.+ +. .... ...
T Consensus 74 ~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~----------~~~~~s~LVte~l~~~~sL~~~--~~~~~~~~~~~~~~~ 141 (268)
T PRK15123 74 GADREWRAIHRLHEVGVDTMTGVAFGERGSN----------PATRTSFIITEDLAPTISLEDY--CADWATNPPDPRLKR 141 (268)
T ss_pred HHHHHHHHHHHHHHcCCCCCCeeEEEEecCC----------CccceeEEEEeeCCCCccHHHH--HHhhcccCCCHHHHH
Confidence 3679999999999999999999887432110 1123456777755443222111 11 0100 123
Q ss_pred HHHHHHHHHHHHhhCCccc
Q 017506 319 DIVRTLADYAIRHHFRHIE 337 (370)
Q Consensus 319 ~~Lr~LaDyvI~~hfP~~~ 337 (370)
+.+++++..+.+-|=-++.
T Consensus 142 ~ll~~la~~i~~LH~~Gi~ 160 (268)
T PRK15123 142 MLIKRVATMVRDMHAAGIN 160 (268)
T ss_pred HHHHHHHHHHHHHHHCcCc
Confidence 6778888888887765543
No 22
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=22.43 E-value=5.1e+02 Score=24.24 Aligned_cols=78 Identities=10% Similarity=0.065 Sum_probs=46.1
Q ss_pred hhhHHHHHHHhhhhcCCCCcceeEEEecCCeeeeccccCCCCCCCCceeEEeeeccceeeechhhhhhcCCCCHHHHHHH
Q 017506 245 SSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTL 324 (370)
Q Consensus 245 SSIREyL~SEAMhaLGIPTTRALaLV~Sge~V~Re~~y~gn~~~EpgAIv~RvApShIRfGsFE~fa~r~~~d~~~Lr~L 324 (370)
-..||+-+-+.|...||||-+.+++....... .-..++++...++. ++..-+...+.-..+.++++
T Consensus 86 r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~~~-----------~~~~~lV~e~l~G~---~~L~~~l~~~~l~~~~~~~i 151 (239)
T PRK01723 86 RAFAEFRLLAQLYEAGLPVPRPIAARVVRHGL-----------FYRADILIERIEGA---RDLVALLQEAPLSEEQWQAI 151 (239)
T ss_pred HHHHHHHHHHHHHhCCCCCceeEeeeeeecCc-----------ceeeeEEEEecCCC---CCHHHHHhcCCCCHHHHHHH
Confidence 35789999999999999999998874332111 11234565544431 12322222211245668888
Q ss_pred HHHHHHhhCCcc
Q 017506 325 ADYAIRHHFRHI 336 (370)
Q Consensus 325 aDyvI~~hfP~~ 336 (370)
+..+..-|--++
T Consensus 152 ~~~l~~lH~~GI 163 (239)
T PRK01723 152 GQLIARFHDAGV 163 (239)
T ss_pred HHHHHHHHHCCC
Confidence 888777775554
No 23
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=20.42 E-value=98 Score=33.18 Aligned_cols=68 Identities=21% Similarity=0.270 Sum_probs=47.3
Q ss_pred cCCCCCCCCcCccccccccceeecCCCceeEeeeccCCCCCCccCCCCccccchhhHHHHHHHhhhhcCCCCcceeEEEe
Q 017506 192 GHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVT 271 (370)
Q Consensus 192 GHQFG~fagQLGDGRAilLGEv~~~~G~r~ELQLKGAG~TPYSR~gDGRAVLRSSIREyL~SEAMhaLGIPTTRALaLV~ 271 (370)
|..||.+.|.-.+...|++|-..|. +..| |+ .||++-+=..| -+-++|+..||++.+.+-||.
T Consensus 238 GNl~~~~~g~~~~~~~v~~gsHlDT-------V~~g-G~------~DG~~Gv~a~l---ea~~~l~~~~~~~~~~i~vv~ 300 (591)
T PRK13590 238 GNVVGRYKGSTPQAKRLLTGSHYDT-------VRNG-GK------YDGRLGIFVPM---ACVRELHRQGRRLPFGLEVVG 300 (591)
T ss_pred CCEEEEecCCCCCCCeEEEeccccc-------CCCC-CC------cccHHHHHHHH---HHHHHHHHcCCCCCCCeEEEE
Confidence 7778877765556678999987653 1222 22 49987776665 445788888999999999985
Q ss_pred c-CCee
Q 017506 272 T-GKFV 276 (370)
Q Consensus 272 S-ge~V 276 (370)
+ +|..
T Consensus 301 ~~~EEg 306 (591)
T PRK13590 301 FAEEEG 306 (591)
T ss_pred ecCCcc
Confidence 4 6654
Done!