Query 017506
Match_columns 370
No_of_seqs 145 out of 868
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 15:32:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3akj_A CTKA; protein kinase, t 41.7 33 0.0011 32.5 5.4 52 217-273 30-81 (325)
2 3luq_A Sensor protein; PAS, hi 26.8 67 0.0023 22.0 3.7 31 144-174 22-52 (114)
3 1ll8_A PAS kinase; PAS domain, 24.3 41 0.0014 24.2 2.3 31 145-175 19-49 (114)
4 3q4f_C DNA repair protein XRCC 23.6 36 0.0012 31.1 2.1 32 299-332 132-163 (186)
5 1ypr_A Profilin; actin-binding 21.5 71 0.0024 26.4 3.4 52 273-332 73-124 (125)
6 2kdk_A ARYL hydrocarbon recept 21.4 76 0.0026 22.6 3.2 27 145-171 23-49 (121)
7 2i46_A Adrenocortical dysplasi 20.2 33 0.0011 30.4 1.1 17 239-255 2-19 (161)
8 3f1p_B ARYL hydrocarbon recept 18.3 61 0.0021 23.4 2.1 30 145-174 22-51 (121)
9 1cja_A Protein (actin-fragmin 18.2 38 0.0013 33.3 1.2 25 245-269 101-125 (342)
10 3mqq_A Transcriptional regulat 17.3 71 0.0024 23.0 2.3 25 145-169 22-46 (120)
No 1
>3akj_A CTKA; protein kinase, transferase; 2.00A {Helicobacter pylori} PDB: 3akk_A* 3akl_A*
Probab=41.74 E-value=33 Score=32.54 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=30.4
Q ss_pred CCceeEeeeccCCCCCCccCCCCccccchhhHHHHHHHhhhhcCCCCcceeEEEecC
Q 017506 217 KSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTG 273 (370)
Q Consensus 217 ~G~r~ELQLKGAG~TPYSR~gDGRAVLRSSIREyL~SEAMhaLGIPTTRALaLV~Sg 273 (370)
+|..|- +||.+.|. ...+++ --.+.+-||+|++...++|||+-..--+...+
T Consensus 30 ~g~~~i--~K~~~~~~--~~~~~~-~~~~~~nE~~~~~LA~~~Gl~va~~~l~~~~~ 81 (325)
T 3akj_A 30 NNELYM--VKFPPKPS--THKEMS-YTNGCFSEYVACHIVNSLGLKVQETLLGTYKN 81 (325)
T ss_dssp TTEEEE--EECCC-------------CCHHHHHHHHHHHHHHTTCCBCCEEEEEETT
T ss_pred CCeEEE--EECCCCCC--Cccccc-ccccHHHHHHHHHHHHHhCCCcCceEEEEECC
Confidence 355565 59988764 111110 11356899999999999999997664333333
No 2
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=26.77 E-value=67 Score=21.99 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=24.6
Q ss_pred CCeEEEeCHHHHHHCCCCccCCCCCChhhhc
Q 017506 144 NPQLVAWSESVADSLELDPKEFERPDFPLFF 174 (370)
Q Consensus 144 ~P~Lv~~n~~la~~LGLd~~~~~~~~~~~~~ 174 (370)
+-+++.+|+.+++.+|++.+++....+.+++
T Consensus 22 ~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~ 52 (114)
T 3luq_A 22 EMRYLAVSRRWREDYGLGDGDILGMSHYDIF 52 (114)
T ss_dssp TCBEEEECHHHHHHTTCCSSCCTTCBHHHHC
T ss_pred CcEEEEECHHHHHHHCCCHHHHcCCcHHHHC
Confidence 3478999999999999998877666665554
No 3
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=24.29 E-value=41 Score=24.15 Aligned_cols=31 Identities=10% Similarity=0.265 Sum_probs=24.8
Q ss_pred CeEEEeCHHHHHHCCCCccCCCCCChhhhcc
Q 017506 145 PQLVAWSESVADSLELDPKEFERPDFPLFFS 175 (370)
Q Consensus 145 P~Lv~~n~~la~~LGLd~~~~~~~~~~~~~s 175 (370)
=+++.+|+.+++.+|.+.+++....+..++.
T Consensus 19 g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~ 49 (114)
T 1ll8_A 19 TEILVANDKACGLLGYSSQDLIGQKLTQFFL 49 (114)
T ss_dssp CBEEEECTTHHHHHTCCTTTTTTSBGGGGSS
T ss_pred CeEEEehHHHHHHhCCCHHHHcCCCHHHhcC
Confidence 3799999999999999988876666655553
No 4
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=23.63 E-value=36 Score=31.14 Aligned_cols=32 Identities=19% Similarity=0.453 Sum_probs=25.5
Q ss_pred ccceeeechhhhhhcCCCCHHHHHHHHHHHHHhh
Q 017506 299 QSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHH 332 (370)
Q Consensus 299 pShIRfGsFE~fa~r~~~d~~~Lr~LaDyvI~~h 332 (370)
-..+|+|+|.+-... +-.+.+|+|++||+.+.
T Consensus 132 dvsF~LGSv~L~~V~--nPaE~irELi~~~L~~i 163 (186)
T 3q4f_C 132 DVSFRLGSFNLEKVE--NPAEVIRELICYCLDTI 163 (186)
T ss_dssp SCEEEEEEEECEECS--CHHHHHHHHHHHHHHHH
T ss_pred CcEEEEeeEEeeeCC--ChHHHHHHHHHHHHHHH
Confidence 356899999997766 34567999999999864
No 5
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=21.52 E-value=71 Score=26.36 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=36.1
Q ss_pred CCeeeeccccCCCCCCCCceeEEeeeccceeeechhhhhhcCCCCHHHHHHHHHHHHHhh
Q 017506 273 GKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHH 332 (370)
Q Consensus 273 ge~V~Re~~y~gn~~~EpgAIv~RvApShIRfGsFE~fa~r~~~d~~~Lr~LaDyvI~~h 332 (370)
++.++|- +...+.|++--..+-|=||+|+--...+ .-...+.+|+||.++.=
T Consensus 73 d~~~i~~-------kk~~~Gi~i~kT~~aivI~~y~e~~~~g-~~~~~ve~ladYL~~~g 124 (125)
T 1ypr_A 73 DDRSIYG-------RHDAEGVVCVRTKQTVIIAHYPPTVQAG-EATKIVEQLADYLIGVQ 124 (125)
T ss_dssp CSSEEEE-------EETTEEEEEEECSSEEEEEEECTTSCHH-HHHHHHHHHHHHHHHTT
T ss_pred CCcEEEE-------ecCCceEEEEECCCEEEEEEcCCCCCHH-HHHHHHHHHHHHHHHcC
Confidence 3556665 3456677777778888899998543221 23568899999998753
No 6
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=21.36 E-value=76 Score=22.60 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=21.2
Q ss_pred CeEEEeCHHHHHHCCCCccCCCCCChh
Q 017506 145 PQLVAWSESVADSLELDPKEFERPDFP 171 (370)
Q Consensus 145 P~Lv~~n~~la~~LGLd~~~~~~~~~~ 171 (370)
-+++.+|+.+.+.+|.+++++....+.
T Consensus 23 g~i~~~N~~~~~~~G~~~~el~g~~~~ 49 (121)
T 2kdk_A 23 GKFVYVDQRATAILGYLPQELLGTSCY 49 (121)
T ss_dssp SBEEEECTHHHHHTCCCTTTSBTSBTT
T ss_pred eeEEEEChhHHHHHCCCHHHHcCCcHH
Confidence 478999999999999998776544433
No 7
>2i46_A Adrenocortical dysplasia protein homolog; TPP1, OB fold, POT1 binding, protein binding; 2.70A {Homo sapiens}
Probab=20.22 E-value=33 Score=30.45 Aligned_cols=17 Identities=53% Similarity=0.675 Sum_probs=14.8
Q ss_pred CccccchhhHHHHH-HHh
Q 017506 239 GLAVLRSSIREFLC-SEA 255 (370)
Q Consensus 239 GRAVLRSSIREyL~-SEA 255 (370)
|+.|||++|||.|. ||+
T Consensus 2 g~lvlrPWIreL~lg~~~ 19 (161)
T 2i46_A 2 GRLVLRPWIRELILGSET 19 (161)
T ss_dssp CCCBCCCCHHHHHHSSSC
T ss_pred CceeccHHHHHHHhcccc
Confidence 78999999999987 565
No 8
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=18.29 E-value=61 Score=23.39 Aligned_cols=30 Identities=10% Similarity=0.142 Sum_probs=23.6
Q ss_pred CeEEEeCHHHHHHCCCCccCCCCCChhhhc
Q 017506 145 PQLVAWSESVADSLELDPKEFERPDFPLFF 174 (370)
Q Consensus 145 P~Lv~~n~~la~~LGLd~~~~~~~~~~~~~ 174 (370)
=+++.+|+.+++.+|.+++++....+.+++
T Consensus 22 g~i~~~n~~~~~~~G~~~~el~g~~~~~~i 51 (121)
T 3f1p_B 22 GIFTFVDHRCVATVGYQPQELLGKNIVEFC 51 (121)
T ss_dssp SBEEEECTTHHHHHSCCGGGTTTSBGGGGB
T ss_pred ceEEEECcchhhhhCCChHHHcCCCHHHeE
Confidence 478899999999999999877655555444
No 9
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=18.22 E-value=38 Score=33.31 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.5
Q ss_pred hhhHHHHHHHhhhhcCCCCcceeEE
Q 017506 245 SSIREFLCSEAMHFLGIPTTRALCL 269 (370)
Q Consensus 245 SSIREyL~SEAMhaLGIPTTRALaL 269 (370)
+.+-|++||+--.+||||+.-.-=|
T Consensus 101 ~l~~E~l~s~LA~~LGlpiP~~Riv 125 (342)
T 1cja_A 101 NIESETFCSLLCMRLGLHAPKVRVV 125 (342)
T ss_dssp THHHHHHHHHHHHHHTCCCCCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCeeEE
Confidence 5599999999999999999986444
No 10
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=17.34 E-value=71 Score=23.00 Aligned_cols=25 Identities=4% Similarity=0.042 Sum_probs=20.0
Q ss_pred CeEEEeCHHHHHHCCCCccCCCCCC
Q 017506 145 PQLVAWSESVADSLELDPKEFERPD 169 (370)
Q Consensus 145 P~Lv~~n~~la~~LGLd~~~~~~~~ 169 (370)
-+++.+|+.+++.+|.+.+++....
T Consensus 22 g~i~~~N~a~~~l~G~~~~el~g~~ 46 (120)
T 3mqq_A 22 RVIEDCNDELAAIFRCARADLIGRS 46 (120)
T ss_dssp TEEEEECHHHHHHTTSCHHHHTTCB
T ss_pred CEEHHHHHHHHHHhCcCHHHhCCCc
Confidence 4799999999999999887654433
Done!