Query 017506
Match_columns 370
No_of_seqs 145 out of 868
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 15:32:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017506.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017506hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ll8a_ d.110.3.5 (A:) N-termi 21.6 25 0.0018 24.9 2.5 32 145-176 19-50 (114)
2 d1jnua_ d.110.3.6 (A:) Photore 20.7 30 0.0022 23.7 2.7 34 142-175 10-43 (104)
3 d1cjaa_ d.144.1.3 (A:) Actin-f 20.5 26 0.0019 32.4 2.9 50 221-270 74-126 (342)
4 d1xj3a1 d.110.3.2 (A:154-259) 18.3 23 0.0017 23.5 1.6 30 145-174 10-39 (106)
5 d1v9ya_ d.110.3.2 (A:) Direct 17.7 45 0.0033 22.3 3.1 29 145-173 21-49 (113)
6 d1c8ua2 d.38.1.3 (A:116-286) T 16.9 23 0.0016 27.7 1.4 25 196-220 133-157 (171)
7 d1gtra2 c.26.1.1 (A:8-338) Glu 16.8 36 0.0026 29.9 2.9 43 288-343 15-65 (331)
8 d1ypra_ d.110.1.1 (A:) Profili 15.7 55 0.004 24.9 3.4 43 288-331 81-123 (125)
9 d1vlfm1 b.52.2.2 (M:729-875) T 15.6 44 0.0032 25.6 2.9 59 147-211 43-108 (147)
10 d1hnja2 c.95.1.2 (A:175-317) K 14.9 36 0.0026 26.3 2.2 35 238-272 34-70 (143)
No 1
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.56 E-value=25 Score=24.87 Aligned_cols=32 Identities=9% Similarity=0.246 Sum_probs=26.8
Q ss_pred CeEEEeCHHHHHHCCCCccCCCCCChhhhccC
Q 017506 145 PQLVAWSESVADSLELDPKEFERPDFPLFFSG 176 (370)
Q Consensus 145 P~Lv~~n~~la~~LGLd~~~~~~~~~~~~~sG 176 (370)
=+++.+|+.+++++|.+.+++....+.+++..
T Consensus 19 G~I~~~N~a~~~l~Gy~~~el~g~~~~~l~~~ 50 (114)
T d1ll8a_ 19 TEILVANDKACGLLGYSSQDLIGQKLTQFFLR 50 (114)
T ss_dssp CBEEEECTTHHHHHTCCTTTTTTSBGGGGSSC
T ss_pred CEEEEECHHHHHhhcCCHHHHcCCCeeeecCc
Confidence 48999999999999999988877777666654
No 2
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=20.72 E-value=30 Score=23.75 Aligned_cols=34 Identities=9% Similarity=0.105 Sum_probs=26.4
Q ss_pred CCCCeEEEeCHHHHHHCCCCccCCCCCChhhhcc
Q 017506 142 VENPQLVAWSESVADSLELDPKEFERPDFPLFFS 175 (370)
Q Consensus 142 ~~~P~Lv~~n~~la~~LGLd~~~~~~~~~~~~~s 175 (370)
+++-+++.+|+++++.+|.+.+++....+..++.
T Consensus 10 ~pd~~I~y~N~a~~~~~G~s~~e~~G~~~~~~~~ 43 (104)
T d1jnua_ 10 LPDNPIIFASDRFLELTEYTREEVLGNNCRFLQG 43 (104)
T ss_dssp STTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCC
T ss_pred CCCCEEEEEcHHHHHHHCcCHHHHCCccceeccc
Confidence 4667999999999999999988776555544443
No 3
>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain {Physarum polycephalum [TaxId: 5791]}
Probab=20.46 E-value=26 Score=32.40 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=35.9
Q ss_pred eEeeeccCCCCCCccCCCCccccch---hhHHHHHHHhhhhcCCCCcceeEEE
Q 017506 221 WELQLKGAGKTPYSRFADGLAVLRS---SIREFLCSEAMHFLGIPTTRALCLV 270 (370)
Q Consensus 221 ~ELQLKGAG~TPYSR~gDGRAVLRS---SIREyL~SEAMhaLGIPTTRALaLV 270 (370)
.++--+|+|=--|--.-+|-+||.+ .--|++|+|--..|||||+..-.|=
T Consensus 74 i~~s~~Gs~Gv~FV~~e~gaiVlK~s~tta~E~y~~eLAr~LGvpvPqmRvI~ 126 (342)
T d1cjaa_ 74 IERSEKGTEGLFFVETESGVFIVKRSTNIESETFCSLLCMRLGLHAPKVRVVS 126 (342)
T ss_dssp EEECCSTTSCEEEEEESSCEEEEECCTTHHHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred eEEeecCCceEEEEEcCCceEEEecCCchHHHHHHHHHHHHhCCCCCceEEec
Confidence 4555556655555555666666654 3569999999999999999986553
No 4
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=18.28 E-value=23 Score=23.54 Aligned_cols=30 Identities=7% Similarity=0.055 Sum_probs=22.9
Q ss_pred CeEEEeCHHHHHHCCCCccCCCCCChhhhc
Q 017506 145 PQLVAWSESVADSLELDPKEFERPDFPLFF 174 (370)
Q Consensus 145 P~Lv~~n~~la~~LGLd~~~~~~~~~~~~~ 174 (370)
=+++.+|+.+++.+|.+.+++....+..++
T Consensus 10 G~I~~~N~a~~~l~Gy~~~el~g~~~~~~~ 39 (106)
T d1xj3a1 10 GIIQLFSTAAERLFGWSELEAIGQNVNILM 39 (106)
T ss_dssp SBEEEECHHHHHHHCCCHHHHTTSBGGGGS
T ss_pred CcEEEEcHHHHHHhhhchHhhcCCCccccc
Confidence 378999999999999998876554444443
No 5
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=17.69 E-value=45 Score=22.35 Aligned_cols=29 Identities=3% Similarity=0.133 Sum_probs=22.7
Q ss_pred CeEEEeCHHHHHHCCCCccCCCCCChhhh
Q 017506 145 PQLVAWSESVADSLELDPKEFERPDFPLF 173 (370)
Q Consensus 145 P~Lv~~n~~la~~LGLd~~~~~~~~~~~~ 173 (370)
=+++.+|+.+++.+|.+.+++.......+
T Consensus 21 g~i~~~N~~~~~l~Gy~~~e~~g~~~~~~ 49 (113)
T d1v9ya_ 21 DEVMFFNPAAEKLWGYKREEVIGNNIDML 49 (113)
T ss_dssp SBEEEECHHHHHHHSCCGGGTTTSBGGGG
T ss_pred CCEEEEchhHhhhhccchhhhcCcceecc
Confidence 48999999999999999887665444333
No 6
>d1c8ua2 d.38.1.3 (A:116-286) Thioesterase II (TesB) {Escherichia coli [TaxId: 562]}
Probab=16.85 E-value=23 Score=27.74 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=21.3
Q ss_pred CCCCCcCccccccccceeecCCCce
Q 017506 196 GMWAGQLGDGRAITLGEILNLKSER 220 (370)
Q Consensus 196 G~fagQLGDGRAilLGEv~~~~G~r 220 (370)
=...+.-|+||++.-|++-+.+|++
T Consensus 133 ~~~s~~a~~gRgl~~g~i~~~dG~L 157 (171)
T d1c8ua2 133 SVESTSASSARGFVRGEFYTQDGVL 157 (171)
T ss_dssp EEEEEEEETTEEEEEEEEEETTCCE
T ss_pred EEECccccCCeeEEEEEEECCCCCE
Confidence 3456778999999999999999975
No 7
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}
Probab=16.82 E-value=36 Score=29.94 Aligned_cols=43 Identities=12% Similarity=0.339 Sum_probs=28.1
Q ss_pred CCCceeEEeeecc---ceeeechhhhhhcCCCCHHHHHHHHHHHHHhhCCc-----ccccCCCC
Q 017506 288 EEPGAIVCRVAQS---FLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRH-----IENMNKSE 343 (370)
Q Consensus 288 ~EpgAIv~RvApS---hIRfGsFE~fa~r~~~d~~~Lr~LaDyvI~~hfP~-----~~~~~~~~ 343 (370)
-..+.|.||+||| ++-+|| ..-+|+.|...+++.+ ++++|..+
T Consensus 15 ~~~~~v~tRFAPSPTG~LHiG~-------------~rtal~n~l~Ak~~~G~fiLRIEDtD~~R 65 (331)
T d1gtra2 15 GKHTTVHTRFPPEPNGYLHIGH-------------AKSICLNFGIAQDYKGQCNLRFDDTNPVK 65 (331)
T ss_dssp TSCSSCEEEECCCSSSCCBHHH-------------HHHHHHHHHHHHHTTCEEEEEECCCCGGG
T ss_pred CCCCeEEEEeCCCCCCcccHHH-------------HHHHHHHHHHHHHhCCEEEEEeCcCCCCc
Confidence 3567899999999 455554 1136777777777765 45555544
No 8
>d1ypra_ d.110.1.1 (A:) Profilin (actin-binding protein) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.71 E-value=55 Score=24.94 Aligned_cols=43 Identities=28% Similarity=0.450 Sum_probs=29.7
Q ss_pred CCCceeEEeeeccceeeechhhhhhcCCCCHHHHHHHHHHHHHh
Q 017506 288 EEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRH 331 (370)
Q Consensus 288 ~EpgAIv~RvApShIRfGsFE~fa~r~~~d~~~Lr~LaDyvI~~ 331 (370)
..++.|++.-..+-|=||+|+=-...+ .-.+.+.+|+||+++.
T Consensus 81 k~~~Gi~i~kT~~~iiig~y~~~~~~~-~~~~~v~~ladYL~~~ 123 (125)
T d1ypra_ 81 HDAEGVVCVRTKQTVIIAHYPPTVQAG-EATKIVEQLADYLIGV 123 (125)
T ss_dssp ETTEEEEEEECSSEEEEEEECTTSCHH-HHHHHHHHHHHHHHHT
T ss_pred eCCCcEEEEECCCEEEEEEcCCCCCHH-HHHHHHHHHHHHHHHc
Confidence 345566666679999999998422111 2357899999999874
No 9
>d1vlfm1 b.52.2.2 (M:729-875) Transhydroxylase alpha subunit, AthL {Pelobacter acidigallici [TaxId: 35816]}
Probab=15.64 E-value=44 Score=25.58 Aligned_cols=59 Identities=8% Similarity=0.066 Sum_probs=34.6
Q ss_pred EEEeCHHHHHHCCCCccCCCCCChhhhccCCc-------CCCCCccchhhcccCCCCCCCCcCccccccccc
Q 017506 147 LVAWSESVADSLELDPKEFERPDFPLFFSGAT-------PLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLG 211 (370)
Q Consensus 147 Lv~~n~~la~~LGLd~~~~~~~~~~~~~sGn~-------~~~g~~P~Aq~YaGHQFG~fagQLGDGRAilLG 211 (370)
.|.+|++-|+.+||... +.+.+.+-.. +.++..| -.++.-|.||.|.+.-.+|....-|
T Consensus 43 ~v~inp~dA~~~GI~dG-----D~V~V~n~~G~i~~~a~vt~~i~p-g~V~~~~~~~~~~~~~~~~~~~~~g 108 (147)
T d1vlfm1 43 IMRVNSIDAEARGIKNG-----DLIRAYNDRGSVILAAQVTECLQP-GTVHSYESCAVYDPLGTAGKSADRG 108 (147)
T ss_dssp EEEEEHHHHHTTTCCTT-----CEEEEEETTEEEEEEEEEESSBCT-TEEECCSCCCCCCBSSSTTTSCBSS
T ss_pred eeeeCHHHHHHcCCCCC-----CEEEEECCCcEEEEEEEECCCcCC-CcEEeeecccccccCCcccccccCC
Confidence 57899999999999653 4455554222 1233333 2444556677776655555544333
No 10
>d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]}
Probab=14.91 E-value=36 Score=26.32 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=25.8
Q ss_pred CCccccchhhHHH--HHHHhhhhcCCCCcceeEEEec
Q 017506 238 DGLAVLRSSIREF--LCSEAMHFLGIPTTRALCLVTT 272 (370)
Q Consensus 238 DGRAVLRSSIREy--L~SEAMhaLGIPTTRALaLV~S 272 (370)
|||.|.+-++|.. ++-++|...|+.+.--=-+|..
T Consensus 34 ~G~~vf~~av~~~~~~i~~~L~~~g~~~~dId~~i~H 70 (143)
T d1hnja2 34 AGNEVFKVAVTELAHIVDETLAANNLDRSQLDWLVPH 70 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEC
T ss_pred EChHHhhhhhhhhhHHHHHHHHHhhhcccccceEEec
Confidence 8999988888766 5668888999987655444433
Done!