Your job contains 1 sequence.
>017508
MNHGGGESTSRSESRTDTSSDRPKAEDFSRAVSKMAVAQICESVGFQGFKDSALDALSDI
AIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVLKGFMGAAEIGKCLVGSGIVKE
IIDFVESKEEIPFAQPIPQYPVIRSRRLIPSFEEMNETPPGKHIPSWLPAFPDPHTYIYT
PMWNERKSDPRADKIELARQRRKAEMALLSLQQRLVCNGETGTSASRPANDEEELLKTGS
NPFFAKPLQSGEKDISPVGLPAKLKDKMSGGNHMSVMEAFAPAIEAVKVSGFSDDADGDR
RYLPEKRPAVHFKFRAGKKFLGEILDSSLQKKGGRRSASFWRDEEKDDKKRRAEFILKQS
IENPQELSQL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017508
(370 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2116149 - symbol:TAF8 "TBP-associated factor 8... 650 9.7e-64 1
TAIR|locus:2180852 - symbol:AT5G15570 "AT5G15570" species... 430 2.0e-40 1
TAIR|locus:2076567 - symbol:AT3G02160 species:3702 "Arabi... 411 2.1e-38 1
TAIR|locus:2197530 - symbol:AT1G31240 species:3702 "Arabi... 230 3.7e-19 1
RGD|1308423 - symbol:Taf8 "TAF8 RNA polymerase II, TATA b... 127 7.2e-09 2
UNIPROTKB|A7MAZ4 - symbol:TAF8 "Transcription initiation ... 127 7.4e-09 2
UNIPROTKB|E2RN76 - symbol:TAF8 "Uncharacterized protein" ... 127 7.4e-09 2
UNIPROTKB|Q7Z7C8 - symbol:TAF8 "Transcription initiation ... 127 7.4e-09 2
MGI|MGI:1926879 - symbol:Taf8 "TAF8 RNA polymerase II, TA... 126 9.6e-09 2
ZFIN|ZDB-GENE-040426-1013 - symbol:taf8 "TAF8 RNA polymer... 129 1.5e-07 2
UNIPROTKB|Q5ZMS1 - symbol:TAF8 "Transcription initiation ... 127 2.0e-06 2
SGD|S000004582 - symbol:TAF8 "TFIID subunit (65 kDa)" spe... 139 2.1e-06 1
UNIPROTKB|F1NMN6 - symbol:TAF8 "Transcription initiation ... 127 9.1e-06 1
UNIPROTKB|F1PI56 - symbol:TAF3 "Uncharacterized protein" ... 100 3.8e-05 3
UNIPROTKB|E1BIA9 - symbol:TAF3 "Uncharacterized protein" ... 100 4.8e-05 3
UNIPROTKB|Q5F489 - symbol:TAF3 "Transcription initiation ... 101 7.3e-05 3
UNIPROTKB|Q5VWG9 - symbol:TAF3 "Transcription initiation ... 100 0.00012 3
MGI|MGI:2388097 - symbol:Taf3 "TAF3 RNA polymerase II, TA... 100 0.00012 3
RGD|2324594 - symbol:Taf3 "TAF3 RNA polymerase II, TATA b... 100 0.00017 2
UNIPROTKB|Q6QI09 - symbol:Taf3 "ATP synthase gamma chain"... 100 0.00017 2
ASPGD|ASPL0000043084 - symbol:AN10317 species:162425 "Eme... 115 0.00055 1
>TAIR|locus:2116149 [details] [associations]
symbol:TAF8 "TBP-associated factor 8" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR009072 EMBL:CP002687
SUPFAM:SSF47113 EMBL:AL035521 EMBL:AL161585 InterPro:IPR006565
Pfam:PF07524 SMART:SM00576 KO:K14649 InterPro:IPR019473
Pfam:PF10406 EMBL:AF360178 EMBL:AY039994 EMBL:AY463623
IPI:IPI00537362 PIR:T04780 RefSeq:NP_567964.1 UniGene:At.2617
ProteinModelPortal:Q9SYZ9 SMR:Q9SYZ9 IntAct:Q9SYZ9 STRING:Q9SYZ9
EnsemblPlants:AT4G34340.1 GeneID:829584 KEGG:ath:AT4G34340
TAIR:At4g34340 InParanoid:Q9SYZ9 OMA:SEAHTEW PhylomeDB:Q9SYZ9
ProtClustDB:CLSN2917667 Genevestigator:Q9SYZ9 Uniprot:Q9SYZ9
Length = 353
Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
Identities = 140/274 (51%), Positives = 185/274 (67%)
Query: 27 DFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNL 86
+FS A +K AVAQ+CESVG++ FKD AL++LS A++YI LGKT++ ANL R++CN+
Sbjct: 25 EFSHAAAKAAVAQVCESVGYENFKDPALESLSGFALQYILQLGKTATSFANLTGRSQCNV 84
Query: 87 FDIIRGIEDLEVLKGFMGAAEIGKCLVGSGI-VKEIIDFVESKEEIPFAQPIPQYPVI-- 143
FDII ++DL G G + C +G I ++EIIDFV S EE+PF+QP+P +PV
Sbjct: 85 FDIILALDDLTDNNGEQGISS-ESCSLGRSIKLREIIDFVNSSEEVPFSQPLPSFPVAIS 143
Query: 144 -RSRRLIPSFEEMNETPPGKHIPSWLPAFPDPHTYIYTPMWNERKSDPRADKIELARQRR 202
RSR++IPSF E+ ETPPGKHIP WLPAFPDPHTY TPMW ER SDPR DKIE ARQRR
Sbjct: 144 DRSRKMIPSFVEIGETPPGKHIPLWLPAFPDPHTYKETPMWIERVSDPRGDKIEQARQRR 203
Query: 203 KAEMALLSLQQRLVCNGETGTSASRPANDEEELLKTGSNPFFAKPLQSGEKDISPVGLPA 262
KAE ALLSLQ++LVC S+ P + + +K + ++ E ++ V
Sbjct: 204 KAERALLSLQRKLVCK----ISSRNPVWGDMDGVK--------EEMRDDESELRSVSSGE 251
Query: 263 KLKDKMSGGNHMSVMEAFAPAIEAVKVSGFSDDA 296
K++ G +SV+EAFAPA+EA + GFS +A
Sbjct: 252 KVESLNRDG--LSVIEAFAPAMEAAR-DGFSSEA 282
>TAIR|locus:2180852 [details] [associations]
symbol:AT5G15570 "AT5G15570" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AL391143
InterPro:IPR006565 Pfam:PF07524 SMART:SM00576 KO:K14649
IPI:IPI00533085 PIR:T51535 RefSeq:NP_197061.1 UniGene:At.31783
ProteinModelPortal:Q9LF25 EnsemblPlants:AT5G15570.1 GeneID:831410
KEGG:ath:AT5G15570 TAIR:At5g15570 eggNOG:NOG267471
HOGENOM:HOG000240226 InParanoid:Q9LF25 OMA:GNDFAYA PhylomeDB:Q9LF25
ProtClustDB:CLSN2685190 Genevestigator:Q9LF25 Uniprot:Q9LF25
Length = 381
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 124/365 (33%), Positives = 196/365 (53%)
Query: 24 KAEDFSRAVSKMAVAQICESV-------------G--FQGFKDSALDALSDIAIRYICDL 68
+ DF+ A+++MA AQICESV G F F+++AL+ L+D+ I+YI ++
Sbjct: 23 RGNDFAYALARMATAQICESVEINSYQESSQSREGLRFSSFQETALETLTDVVIQYIQNI 82
Query: 69 GKTSSFQANLACRTECNLFDIIRGIEDLEVLKGFMGAAEIGKCLVGSGIVKEIIDFVESK 128
GKT+ F N+A R E N DI++ +EDL GF GA ++ CL SG+VK+II +
Sbjct: 83 GKTAQFYVNMAGRVESNALDIVQALEDLGSGLGFDGAHDVEHCLADSGVVKDIIRYTGEA 142
Query: 129 EEIPFAQPIPQYPVIRSRRLIPSFEEMNETPPGKHIPSWLPAFPDPHTYIYTPMWNERKS 188
EEIPF +P++P R +R PSF ++ PP +HIP WLPAFP+ T M N +
Sbjct: 143 EEIPFVYSLPRFPFNRGKRPAPSFSDIGVEPPDEHIPVWLPAFPE------TKMSNGSE- 195
Query: 189 DPRADKIELARQRRKAEMALLSLQQRLVCNGETGTSASRPAND-EEELLKTGSNPFFAKP 247
+ DKIE Q R +L+S+QQ + + S D ++ + + NPF A P
Sbjct: 196 EINVDKIERDVQSRDNGSSLMSVQQSVDVD-RLKVQKSMDQKDVQKPIEEPEGNPFLAAP 254
Query: 248 LQSGEKDIS--PVGLPAKL-KDKMSGGN----HMSVMEAFAPAIEAVKVSGFSDDA---- 296
+ GEK++S V P++L K+++S + HMS M PA+EA +S +D
Sbjct: 255 IWVGEKNVSLSRVVCPSELRKEEISTNHLPEKHMS-MSHHIPALEAYALSDKINDKNRLA 313
Query: 297 ---DGDRRYLPEKRPAVHFKFRAGKKFLGEI--LDSSLQKKGGRRSASFWRDEEKDDKKR 351
D +R + A+ +F+ G + E ++ L++KG + R E+K +++
Sbjct: 314 GMEDEQKRDGARTQGAL-LRFKIGTRKASECWKINQCLEEKGWFKEDGNKR-EKKVEREE 371
Query: 352 RAEFI 356
++E I
Sbjct: 372 KSESI 376
>TAIR|locus:2076567 [details] [associations]
symbol:AT3G02160 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC009755 EMBL:AC011664
UniGene:At.75162 InterPro:IPR006565 Pfam:PF07524 SMART:SM00576
KO:K14649 HOGENOM:HOG000240226 ProtClustDB:CLSN2685190
EMBL:BT015767 EMBL:BT020172 EMBL:AK226400 IPI:IPI00517297
RefSeq:NP_186865.1 ProteinModelPortal:Q9S7R9 PRIDE:Q9S7R9
EnsemblPlants:AT3G02160.1 GeneID:821295 KEGG:ath:AT3G02160
TAIR:At3g02160 eggNOG:NOG312984 InParanoid:Q9S7R9 OMA:ICESVEV
PhylomeDB:Q9S7R9 Genevestigator:Q9S7R9 Uniprot:Q9S7R9
Length = 397
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 113/356 (31%), Positives = 183/356 (51%)
Query: 24 KAEDFSRAVSKMAVAQICESV------------G--FQGFKDSALDALSDIAIRYICDLG 69
+ DF+ ++++MAVAQICESV G F F++SALD L+D+A++YI +G
Sbjct: 39 RGNDFAFSIARMAVAQICESVEVNPYQESQTREGVRFSSFQESALDTLTDVAVQYIQSIG 98
Query: 70 KTSSFQANLACRTECNLFDIIRGIEDLEVLKGFMGAAEIGKCLVGSGIVKEIIDFVESKE 129
KT+ ANLA R + N DI++ +EDL GF G ++ CL SG+VK+II + E
Sbjct: 99 KTAHLYANLAGRVDGNSLDILQALEDLGSGLGFAGVSDTDHCLADSGVVKDIIRYTGEAE 158
Query: 130 EIPFAQPIPQYPVIRSRRLIPSFEEMNETPPGKHIPSWLPAFPDPHTYIYTPMWNERKSD 189
EIPF +P++P + ++ PSF E+ PP +HIP WLPAFP+ T + +R +
Sbjct: 159 EIPFVYSLPRFPFSKEKKPAPSFSEVGAEPPDEHIPVWLPAFPE------TELC-DRSEE 211
Query: 190 PRADKIELARQRRKAEMALLSLQQRLVCNGETGT-SASRPANDEEELLKTGSNPFFAKPL 248
A IE ++ +L S+Q G +S+ + E + G N F PL
Sbjct: 212 TNAATIEGEIPSKENGSSLPSMQLSFDGGGRLEIHKSSKDVGESTEAVVEG-NLFLTAPL 270
Query: 249 QSGEKDISPVGLPAKLK----------DK-MSGGNHMSVMEAFAPAIEAVKVSGFSDDAD 297
+ EK++SPV P +L DK + +H+ ++EA AP+ + + + D
Sbjct: 271 RFVEKNVSPVVRPLELSNEVVRTNHVPDKHVRNNHHIPILEASAPSDKINNKNWLAISKD 330
Query: 298 GDRRYLPEKR-PAVHFKFRAGKKFLGEILDSSLQKKGGRRSASFWRDEEKDDKKRR 352
++ + K V FK K+ + + S Q++G + R++ + K++R
Sbjct: 331 VEKVDVARKELTLVRFKIGTTKRSMCLAKNRSFQEEGWFQEGEDKREKTSEIKEKR 386
>TAIR|locus:2197530 [details] [associations]
symbol:AT1G31240 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
EMBL:CP002684 EMBL:AC004793 InterPro:IPR006565 Pfam:PF07524
SMART:SM00576 KO:K14649 EMBL:BT010198 EMBL:AK229436 IPI:IPI00531567
RefSeq:NP_174409.1 UniGene:At.40389 ProteinModelPortal:Q9SA19
IntAct:Q9SA19 DNASU:840012 EnsemblPlants:AT1G31240.1 GeneID:840012
KEGG:ath:AT1G31240 eggNOG:NOG296492 OMA:IAVSQIC
ProtClustDB:CLSN2682368 Genevestigator:Q9SA19 Uniprot:Q9SA19
Length = 277
Score = 230 (86.0 bits), Expect = 3.7e-19, P = 3.7e-19
Identities = 51/153 (33%), Positives = 89/153 (58%)
Query: 27 DFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNL 86
+FS +++K+AV+QIC+S+G++ SAL+ L+ +++ L + +S +N A RTE NL
Sbjct: 25 EFSFSLTKIAVSQICQSIGYKATDASALNTLTLTTTKFLQSLAELASSFSNTANRTEVNL 84
Query: 87 FDIIRGIEDLEVLKG--FMGAAEI----GKCLVGSGIVKEIIDFVESKEEIPFAQPIPQY 140
FDI+ G++D+ + F G + + +CL+ S +++ + DFV EIPFA+P+P+
Sbjct: 85 FDIVNGLQDIALSTSDCFPGGSTVHDIESQCLIKSAVLRNLSDFVTYAPEIPFAKPLPRR 144
Query: 141 PVIRSRRLIPSFEEMNETPPGKHIPSWLPAFPD 173
S + + +P+WLP FPD
Sbjct: 145 ERDGSFGGDLDHVAVTRSVDVTSVPAWLPPFPD 177
>RGD|1308423 [details] [associations]
symbol:Taf8 "TAF8 RNA polymerase II, TATA box binding protein
(TBP)-associated factor" species:10116 "Rattus norvegicus"
[GO:0001833 "inner cell mass cell proliferation" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005669 "transcription
factor TFIID complex" evidence=IEA;ISO] [GO:0045598 "regulation of
fat cell differentiation" evidence=IEA;ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA;ISO]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO]
[GO:0051457 "maintenance of protein location in nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR009072 RGD:1308423 GO:GO:0048471 GO:GO:0045893
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0045598 GO:GO:0051457
GO:GO:0001833 EMBL:CH473987 GO:GO:0005669 InterPro:IPR006565
Pfam:PF07524 SMART:SM00576 CTD:129685 GeneTree:ENSGT00390000017567
KO:K14649 OMA:TENLALH OrthoDB:EOG4V6ZH6 InterPro:IPR019473
Pfam:PF10406 IPI:IPI00371755 RefSeq:NP_001101667.1 UniGene:Rn.35557
Ensembl:ENSRNOT00000020499 GeneID:316216 KEGG:rno:316216
UCSC:RGD:1308423 NextBio:670552 Uniprot:D3ZY89
Length = 308
Score = 127 (49.8 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 36/95 (37%), Positives = 46/95 (48%)
Query: 127 SKEEIPFAQPIPQYPVIRSRRLIPSFEEMNETPPGKHIPSWLPAFPDPHTYIYTPMWNER 186
S+ + A P+ PV + L + PP HIPS P FPDPHTYI TP + E
Sbjct: 112 SQRMVITAPPVTNQPVT-PKALTAG--QNRPHPP--HIPSHFPEFPDPHTYIKTPTYREP 166
Query: 187 KSDPRADKIELARQRRKAEMALLSLQQRLVCNGET 221
SD + + + A QRR E AL + GET
Sbjct: 167 VSDYQVLREKAASQRRDVERALTRFMAK---TGET 198
Score = 71 (30.1 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 13/61 (21%), Positives = 33/61 (54%)
Query: 30 RAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDI 89
R ++ V+ + GF+ + ++++ L+++ YI ++G+++ RT+ L DI
Sbjct: 32 RRTLQVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDI 91
Query: 90 I 90
+
Sbjct: 92 V 92
>UNIPROTKB|A7MAZ4 [details] [associations]
symbol:TAF8 "Transcription initiation factor TFIID subunit
8" species:9913 "Bos taurus" [GO:0051457 "maintenance of protein
location in nucleus" evidence=IEA] [GO:0048471 "perinuclear region
of cytoplasm" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045598 "regulation
of fat cell differentiation" evidence=IEA] [GO:0005669
"transcription factor TFIID complex" evidence=IEA] [GO:0001833
"inner cell mass cell proliferation" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR009072
GO:GO:0048471 GO:GO:0045893 GO:GO:0030154 GO:GO:0006351
Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0045598 GO:GO:0051457
GO:GO:0001833 GO:GO:0005669 InterPro:IPR006565 Pfam:PF07524
SMART:SM00576 EMBL:BC151255 IPI:IPI00706402 RefSeq:NP_001094670.1
UniGene:Bt.102140 STRING:A7MAZ4 PRIDE:A7MAZ4
Ensembl:ENSBTAT00000036067 GeneID:539938 KEGG:bta:539938 CTD:129685
eggNOG:NOG257256 GeneTree:ENSGT00390000017567 HOGENOM:HOG000007034
HOVERGEN:HBG105411 InParanoid:A7MAZ4 KO:K14649 OMA:TENLALH
OrthoDB:EOG4V6ZH6 NextBio:20878312 InterPro:IPR019473 Pfam:PF10406
Uniprot:A7MAZ4
Length = 310
Score = 127 (49.8 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 36/95 (37%), Positives = 46/95 (48%)
Query: 127 SKEEIPFAQPIPQYPVIRSRRLIPSFEEMNETPPGKHIPSWLPAFPDPHTYIYTPMWNER 186
S+ + A P+ PV + L + PP HIPS P FPDPHTYI TP + E
Sbjct: 114 SQRMVITAPPVTNQPVT-PKALTAG--QNRPHPP--HIPSHFPEFPDPHTYIKTPTYREP 168
Query: 187 KSDPRADKIELARQRRKAEMALLSLQQRLVCNGET 221
SD + + + A QRR E AL + GET
Sbjct: 169 VSDYQVLREKAASQRRDVERALTRFMAK---TGET 200
Score = 71 (30.1 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 13/61 (21%), Positives = 33/61 (54%)
Query: 30 RAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDI 89
R ++ V+ + GF+ + ++++ L+++ YI ++G+++ RT+ L DI
Sbjct: 34 RRTLQVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDI 93
Query: 90 I 90
+
Sbjct: 94 V 94
>UNIPROTKB|E2RN76 [details] [associations]
symbol:TAF8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR009072 Gene3D:1.10.20.10 SUPFAM:SSF47113
InterPro:IPR006565 Pfam:PF07524 SMART:SM00576
GeneTree:ENSGT00390000017567 OMA:TENLALH InterPro:IPR019473
Pfam:PF10406 EMBL:AAEX03008324 Ensembl:ENSCAFT00000002559
Uniprot:E2RN76
Length = 310
Score = 127 (49.8 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 36/95 (37%), Positives = 46/95 (48%)
Query: 127 SKEEIPFAQPIPQYPVIRSRRLIPSFEEMNETPPGKHIPSWLPAFPDPHTYIYTPMWNER 186
S+ + A P+ PV + L + PP HIPS P FPDPHTYI TP + E
Sbjct: 114 SQRMVITAPPVTNQPVT-PKALTAG--QNRPHPP--HIPSHFPEFPDPHTYIKTPTYREP 168
Query: 187 KSDPRADKIELARQRRKAEMALLSLQQRLVCNGET 221
SD + + + A QRR E AL + GET
Sbjct: 169 VSDYQVLREKAASQRRDVERALTRFMAK---TGET 200
Score = 71 (30.1 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 13/61 (21%), Positives = 33/61 (54%)
Query: 30 RAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDI 89
R ++ V+ + GF+ + ++++ L+++ YI ++G+++ RT+ L DI
Sbjct: 34 RRTLQVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDI 93
Query: 90 I 90
+
Sbjct: 94 V 94
>UNIPROTKB|Q7Z7C8 [details] [associations]
symbol:TAF8 "Transcription initiation factor TFIID subunit
8" species:9606 "Homo sapiens" [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0001833 "inner cell mass cell
proliferation" evidence=IEA] [GO:0005669 "transcription factor
TFIID complex" evidence=IDA] [GO:0045598 "regulation of fat cell
differentiation" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IDA]
[GO:0051457 "maintenance of protein location in nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR009072 GO:GO:0048471 GO:GO:0045893 GO:GO:0030154
GO:GO:0006351 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0045598
GO:GO:0051457 GO:GO:0001833 EMBL:AL513008 GO:GO:0005669
InterPro:IPR006565 Pfam:PF07524 SMART:SM00576 CTD:129685
eggNOG:NOG257256 HOGENOM:HOG000007034 HOVERGEN:HBG105411 KO:K14649
OMA:TENLALH OrthoDB:EOG4V6ZH6 InterPro:IPR019473 Pfam:PF10406
EMBL:AF465841 EMBL:AK057383 EMBL:AL512274 EMBL:BC119678
EMBL:BC119679 IPI:IPI00065313 IPI:IPI00878968 IPI:IPI00879798
RefSeq:NP_612639.2 UniGene:Hs.520122 ProteinModelPortal:Q7Z7C8
SMR:Q7Z7C8 IntAct:Q7Z7C8 STRING:Q7Z7C8 PhosphoSite:Q7Z7C8
DMDM:74723384 PaxDb:Q7Z7C8 PRIDE:Q7Z7C8 Ensembl:ENST00000372977
Ensembl:ENST00000372978 Ensembl:ENST00000372982
Ensembl:ENST00000456846 Ensembl:ENST00000494547 GeneID:129685
KEGG:hsa:129685 UCSC:uc003orr.3 UCSC:uc003ort.3 UCSC:uc003orv.1
GeneCards:GC06P042018 HGNC:HGNC:17300 HPA:HPA031734 MIM:609514
neXtProt:NX_Q7Z7C8 PharmGKB:PA162405144 ChiTaRS:TAF8
GenomeRNAi:129685 NextBio:82629 ArrayExpress:Q7Z7C8 Bgee:Q7Z7C8
CleanEx:HS_TAF8 Genevestigator:Q7Z7C8 Uniprot:Q7Z7C8
Length = 310
Score = 127 (49.8 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 36/95 (37%), Positives = 46/95 (48%)
Query: 127 SKEEIPFAQPIPQYPVIRSRRLIPSFEEMNETPPGKHIPSWLPAFPDPHTYIYTPMWNER 186
S+ + A P+ PV + L + PP HIPS P FPDPHTYI TP + E
Sbjct: 114 SQRMVITAPPVTNQPVT-PKALTAG--QNRPHPP--HIPSHFPEFPDPHTYIKTPTYREP 168
Query: 187 KSDPRADKIELARQRRKAEMALLSLQQRLVCNGET 221
SD + + + A QRR E AL + GET
Sbjct: 169 VSDYQVLREKAASQRRDVERALTRFMAK---TGET 200
Score = 71 (30.1 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 13/61 (21%), Positives = 33/61 (54%)
Query: 30 RAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDI 89
R ++ V+ + GF+ + ++++ L+++ YI ++G+++ RT+ L DI
Sbjct: 34 RRTLQVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDI 93
Query: 90 I 90
+
Sbjct: 94 V 94
>MGI|MGI:1926879 [details] [associations]
symbol:Taf8 "TAF8 RNA polymerase II, TATA box binding
protein (TBP)-associated factorq" species:10090 "Mus musculus"
[GO:0001833 "inner cell mass cell proliferation" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005669 "transcription
factor TFIID complex" evidence=ISA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0045598 "regulation of fat cell differentiation"
evidence=ISA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=ISO] [GO:0051457 "maintenance of
protein location in nucleus" evidence=ISO] InterPro:IPR009072
MGI:MGI:1926879 GO:GO:0048471 GO:GO:0045893 GO:GO:0030154
GO:GO:0006351 Gene3D:1.10.20.10 SUPFAM:SSF47113 GO:GO:0045598
GO:GO:0051457 GO:GO:0001833 GO:GO:0005669 InterPro:IPR006565
Pfam:PF07524 SMART:SM00576 CTD:129685 eggNOG:NOG257256
GeneTree:ENSGT00390000017567 HOGENOM:HOG000007034
HOVERGEN:HBG105411 KO:K14649 OMA:TENLALH OrthoDB:EOG4V6ZH6
InterPro:IPR019473 Pfam:PF10406 EMBL:AF222802 EMBL:AK045108
EMBL:AK049949 EMBL:AK076486 EMBL:AK086656 EMBL:AK162110
EMBL:BC057895 IPI:IPI00459354 IPI:IPI00880809 IPI:IPI00881010
IPI:IPI00881023 IPI:IPI00881150 RefSeq:NP_071298.1
UniGene:Mm.275901 ProteinModelPortal:Q9EQH4 SMR:Q9EQH4
STRING:Q9EQH4 PhosphoSite:Q9EQH4 PRIDE:Q9EQH4 DNASU:63856
Ensembl:ENSMUST00000067103 GeneID:63856 KEGG:mmu:63856
UCSC:uc008cvh.1 UCSC:uc008cvi.1 UCSC:uc008cvj.1 InParanoid:Q9EQH4
NextBio:319779 Bgee:Q9EQH4 Genevestigator:Q9EQH4 Uniprot:Q9EQH4
Length = 308
Score = 126 (49.4 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 36/95 (37%), Positives = 46/95 (48%)
Query: 127 SKEEIPFAQPIPQYPVIRSRRLIPSFEEMNETPPGKHIPSWLPAFPDPHTYIYTPMWNER 186
S+ + A P+ PV + L + PP HIPS P FPDPHTYI TP + E
Sbjct: 112 SQRMVITAPPVTNQPVT-PKALTAG--QNRPHPP--HIPSHFPEFPDPHTYIKTPTYREP 166
Query: 187 KSDPRADKIELARQRRKAEMALLSLQQRLVCNGET 221
SD + + + A QRR E AL + GET
Sbjct: 167 VSDYQILREKAASQRRDVERALTRFMAK---TGET 198
Score = 71 (30.1 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 13/61 (21%), Positives = 33/61 (54%)
Query: 30 RAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDI 89
R ++ V+ + GF+ + ++++ L+++ YI ++G+++ RT+ L DI
Sbjct: 32 RRTLQVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDI 91
Query: 90 I 90
+
Sbjct: 92 V 92
>ZFIN|ZDB-GENE-040426-1013 [details] [associations]
symbol:taf8 "TAF8 RNA polymerase II, TATA box
binding protein (TBP)-associated factor" species:7955 "Danio rerio"
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR009072 ZFIN:ZDB-GENE-040426-1013 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0006355
GO:GO:0006351 Gene3D:1.10.20.10 InterPro:IPR006565 Pfam:PF07524
SMART:SM00576 CTD:129685 eggNOG:NOG257256
GeneTree:ENSGT00390000017567 HOGENOM:HOG000007034
HOVERGEN:HBG105411 KO:K14649 OrthoDB:EOG4V6ZH6 InterPro:IPR019473
Pfam:PF10406 EMBL:BC049422 EMBL:BC065457 IPI:IPI00481674
IPI:IPI00882794 RefSeq:NP_956580.1 UniGene:Dr.159222 STRING:Q6P0T2
PRIDE:Q6P0T2 Ensembl:ENSDART00000039498 GeneID:393256
KEGG:dre:393256 InParanoid:Q6P0T2 NextBio:20814317 Bgee:Q6P0T2
Uniprot:Q6P0T2
Length = 308
Score = 129 (50.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 37/95 (38%), Positives = 46/95 (48%)
Query: 127 SKEEIPFAQPIPQYPVIRSRRLIPSFEEMNETPPGKHIPSWLPAFPDPHTYIYTPMWNER 186
S+ + A PI PV+ + L T P HIPS P FPDPHTYI TP + E
Sbjct: 116 SQRMVITAPPITNAPVV-PKSLTAG---QKRTHPA-HIPSHFPDFPDPHTYIRTPTFREP 170
Query: 187 KSDPRADKIELARQRRKAEMALLSLQQRLVCNGET 221
SD + + + A QRR E AL + GET
Sbjct: 171 VSDYQVVREKAASQRRDVERALTRFMAK---TGET 202
Score = 56 (24.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 11/61 (18%), Positives = 29/61 (47%)
Query: 30 RAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDI 89
R ++ V+ + GF + + ++ L+++ YI ++G+ + R+ L D+
Sbjct: 36 RRTLQVVVSALLTECGFDSAEKAVVETLTEMMQSYITEVGRCAKANCEHTARSTPTLSDV 95
Query: 90 I 90
+
Sbjct: 96 V 96
>UNIPROTKB|Q5ZMS1 [details] [associations]
symbol:TAF8 "Transcription initiation factor TFIID subunit
8" species:9031 "Gallus gallus" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0001833 "inner cell mass cell proliferation"
evidence=IEA] [GO:0005669 "transcription factor TFIID complex"
evidence=IEA] [GO:0045598 "regulation of fat cell differentiation"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0051457 "maintenance of protein
location in nucleus" evidence=IEA] GO:GO:0007275 GO:GO:0048471
GO:GO:0045893 GO:GO:0030154 GO:GO:0006351 GO:GO:0045598
GO:GO:0051457 GO:GO:0005669 InterPro:IPR006565 Pfam:PF07524
CTD:129685 eggNOG:NOG257256 HOGENOM:HOG000007034 HOVERGEN:HBG105411
KO:K14649 OrthoDB:EOG4V6ZH6 InterPro:IPR019473 Pfam:PF10406
EMBL:AJ719313 IPI:IPI00579339 RefSeq:NP_001026094.1
UniGene:Gga.22333 STRING:Q5ZMS1 GeneID:419929 KEGG:gga:419929
InParanoid:Q5ZMS1 NextBio:20822916 ArrayExpress:Q5ZMS1
Uniprot:Q5ZMS1
Length = 244
Score = 127 (49.8 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 30/82 (36%), Positives = 41/82 (50%)
Query: 141 PVIRSRRLIPSFEEMNETPPG-KHIPSWLPAFPDPHTYIYTPMWNERKSDPRADKIELAR 199
P + ++ + P + P HIP + P FPDPHTYI TP + E SD + + + A
Sbjct: 59 PPVTNQPVTPKALTAGQNKPHPSHIPGYFPEFPDPHTYIKTPTYREPVSDYQVLREKAAS 118
Query: 200 QRRKAEMALLSLQQRLVCNGET 221
QRR E AL + GET
Sbjct: 119 QRRDVERALTRFMAK---TGET 137
Score = 42 (19.8 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 64 YICDLGKTSSFQANLACRTECNLFDII 90
YI ++G+++ RT+ L DI+
Sbjct: 5 YISEIGRSAKSYCEHTARTQPTLSDIV 31
>SGD|S000004582 [details] [associations]
symbol:TAF8 "TFIID subunit (65 kDa)" species:4932
"Saccharomyces cerevisiae" [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0051123 "RNA polymerase
II transcriptional preinitiation complex assembly" evidence=IC]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005669
"transcription factor TFIID complex" evidence=IDA] [GO:0001075 "RNA
polymerase II core promoter sequence-specific DNA binding
transcription factor activity involved in preinitiation complex
assembly" evidence=IC] SGD:S000004582 GO:GO:0006355 EMBL:BK006946
EMBL:Z49210 GO:GO:0005669 GO:GO:0051123 KO:K14649
InterPro:IPR019473 Pfam:PF10406 PIR:S53958 RefSeq:NP_013593.1
ProteinModelPortal:Q03750 DIP:DIP-1954N IntAct:Q03750
MINT:MINT-405858 STRING:Q03750 PaxDb:Q03750 PeptideAtlas:Q03750
EnsemblFungi:YML114C GeneID:854926 KEGG:sce:YML114C CYGD:YML114c
eggNOG:NOG267301 OMA:DHTYKFT OrthoDB:EOG4Z65Z2 NextBio:977947
Genevestigator:Q03750 GermOnline:YML114C Uniprot:Q03750
Length = 510
Score = 139 (54.0 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 159 PPGKHIPSWLPAFPDPHTYIYTPMWNERKSDPRADKIELARQRRKAEMALLSLQQRLVCN 218
P K IPSWLP FP HTY +TP +N +D + K E+ ++ +++E ALL+L + L
Sbjct: 170 PLEKQIPSWLPNFPPDHTYKFTPEFNHPITDLKTIKKEIVKESQESEKALLNLNKSLSHI 229
Query: 219 GETGTSASRPANDEEELLK 237
+ P D+E+ ++
Sbjct: 230 SSASNTPQPPGLDDEDAIE 248
>UNIPROTKB|F1NMN6 [details] [associations]
symbol:TAF8 "Transcription initiation factor TFIID subunit
8" species:9031 "Gallus gallus" [GO:0001833 "inner cell mass cell
proliferation" evidence=IEA] [GO:0005669 "transcription factor
TFIID complex" evidence=IEA] [GO:0045598 "regulation of fat cell
differentiation" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0051457
"maintenance of protein location in nucleus" evidence=IEA]
GO:GO:0048471 GO:GO:0045893 GO:GO:0045598 GO:GO:0051457
GO:GO:0005669 InterPro:IPR006565 Pfam:PF07524
GeneTree:ENSGT00390000017567 InterPro:IPR019473 Pfam:PF10406
IPI:IPI00579339 EMBL:AADN02066913 EMBL:AADN02066914
Ensembl:ENSGALT00000005533 OMA:AIREKSA ArrayExpress:F1NMN6
Uniprot:F1NMN6
Length = 239
Score = 127 (49.8 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 30/82 (36%), Positives = 41/82 (50%)
Query: 141 PVIRSRRLIPSFEEMNETPPG-KHIPSWLPAFPDPHTYIYTPMWNERKSDPRADKIELAR 199
P + ++ + P + P HIP + P FPDPHTYI TP + E SD + + + A
Sbjct: 54 PPVTNQPVTPKALTAGQNKPHPSHIPGYFPEFPDPHTYIKTPTYREPVSDYQVLREKAAS 113
Query: 200 QRRKAEMALLSLQQRLVCNGET 221
QRR E AL + GET
Sbjct: 114 QRRDVERALTRFMAK---TGET 132
>UNIPROTKB|F1PI56 [details] [associations]
symbol:TAF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051457 "maintenance of protein location in
nucleus" evidence=IEA] [GO:0043433 "negative regulation of
sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005669 "transcription factor TFIID complex"
evidence=IEA] [GO:0002039 "p53 binding" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00628
PROSITE:PS50016 SMART:SM00249 GO:GO:0046872 GO:GO:0008270
GO:GO:0000122 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0043433 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0051457 GO:GO:0005669 InterPro:IPR006565
Pfam:PF07524 SMART:SM00576 CTD:83860 KO:K14650 OMA:FTPKTKT
GeneTree:ENSGT00680000099961 EMBL:AAEX03001297 RefSeq:XP_544263.2
Ensembl:ENSCAFT00000008068 GeneID:487135 KEGG:cfa:487135
Uniprot:F1PI56
Length = 932
Score = 100 (40.3 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 26 EDFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECN 85
E +SR++ +++VAQIC+++G+ + SA L+D+ RY+ LG+ + L RT+
Sbjct: 3 ESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPI 62
Query: 86 LFDI 89
L D+
Sbjct: 63 LDDV 66
Score = 66 (28.3 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 15/65 (23%), Positives = 33/65 (50%)
Query: 107 EIGKCLVGSGI-VKEIIDFVESKEEIPFAQPIPQYPVIRSRRL-IPSFEEMNETPPGKHI 164
++G+ G+ + E+ D++ + E + F IP +PV ++ L P + ++I
Sbjct: 65 DVGEAFQLMGVSLHELEDYIHNIEPVTFPHQIPSFPVSKNNVLQFPQPGSKDAEERKEYI 124
Query: 165 PSWLP 169
P ++P
Sbjct: 125 PDYMP 129
Score = 52 (23.4 bits), Expect = 3.8e-05, Sum P(3) = 3.8e-05
Identities = 43/198 (21%), Positives = 73/198 (36%)
Query: 156 NETPPGKHIPSWLPAFPDPHTYIYTPMWNERKSDPRADKIELARQRRKAEMALLSLQQRL 215
NE P K I + D + ER+ DP E + ++E L + +R+
Sbjct: 373 NENQPKKAIVTD-KTIDDSINAVIARACAEREPDP----FEFS-SGSESEGDLFTSPKRI 426
Query: 216 VCNGETGTSASRPANDEEELLKTGSNPFFAKPLQSGEKDI-SPVGLPAKLKDKMSGGNHM 274
+ T AS +N+ K+GS P PL G + + A + D++ M
Sbjct: 427 SGSECTTPKASTSSNN---FTKSGSTPL---PLSGGTSSSDNSWTMDASI-DEVVRKAKM 479
Query: 275 SVMEAFAPAIEAVKVSGFSDDADGDRRYLPEKRPAVHFKFRAGKKFLGEILDSSLQKKGG 334
A P + S + E++ + KK E L + ++KK
Sbjct: 480 GAPPAVPPGFPYISSPSVSPPTPEPLHKVYEEKTKLPSSVEVKKKLKKE-LKTKMKKKEK 538
Query: 335 RRSASFWRDEEKDDKKRR 352
+R RD+ K+ K +
Sbjct: 539 QRDKERERDKSKEKSKEK 556
Score = 41 (19.5 bits), Expect = 0.00020, Sum P(4) = 0.00020
Identities = 19/76 (25%), Positives = 32/76 (42%)
Query: 212 QQRLVCNGETGTSASR-PANDEEELLKT---GSNPFFAK-PLQSGEKDISPVGLPAKLKD 266
++++ +G T A + P +E+EL + F K PL S E + P +L
Sbjct: 140 EEQVPTDGGTSAEAMQVPLEEEDELEEEEIINDENFLGKRPLDSPEAEEMPAIKRPRLLS 199
Query: 267 KMSGGNHMSVMEAFAP 282
+ V+EA P
Sbjct: 200 TKGDTLDIVVLEAREP 215
Score = 40 (19.1 bits), Expect = 0.00020, Sum P(4) = 0.00020
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 331 KKGGRRSASFWRDEEKDDKKRRAEFILKQSIENPQE 366
KK ++ +++EK DK+R E ++ E +E
Sbjct: 705 KKEKKKKKEKEKEKEKKDKEREREKREREKREKEKE 740
Score = 37 (18.1 bits), Expect = 0.00038, Sum P(4) = 0.00038
Identities = 9/47 (19%), Positives = 23/47 (48%)
Query: 313 KFRAGKKFLGEILDSSLQKKGGRRSASFWRDEEKDDKKRRAEFILKQ 359
K + K ++ + +K+ + + WR+ KD++ +F +K+
Sbjct: 548 KSKEKSKEKDKVKEKEKEKESTKETKYPWREFLKDEEPDPYKFKIKE 594
>UNIPROTKB|E1BIA9 [details] [associations]
symbol:TAF3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051457 "maintenance of protein location in nucleus"
evidence=IEA] [GO:0043433 "negative regulation of sequence-specific
DNA binding transcription factor activity" evidence=IEA]
[GO:0005669 "transcription factor TFIID complex" evidence=IEA]
[GO:0002039 "p53 binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00628 PROSITE:PS50016
SMART:SM00249 GO:GO:0046872 GO:GO:0008270 GO:GO:0000122
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0043433 InterPro:IPR019786 PROSITE:PS01359
GO:GO:0051457 GO:GO:0005669 InterPro:IPR006565 Pfam:PF07524
SMART:SM00576 CTD:83860 KO:K14650 OMA:FTPKTKT
GeneTree:ENSGT00680000099961 EMBL:DAAA02035305 EMBL:DAAA02035306
EMBL:DAAA02035307 EMBL:DAAA02035308 IPI:IPI00841386
RefSeq:XP_003586802.1 UniGene:Bt.87954 Ensembl:ENSBTAT00000003674
GeneID:506674 KEGG:bta:506674 ArrayExpress:E1BIA9 Uniprot:E1BIA9
Length = 932
Score = 100 (40.3 bits), Expect = 4.8e-05, Sum P(3) = 4.8e-05
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 26 EDFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECN 85
E +SR++ +++VAQIC+++G+ + SA L+D+ RY+ LG+ + L RT+
Sbjct: 3 ESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPI 62
Query: 86 LFDI 89
L D+
Sbjct: 63 LDDV 66
Score = 66 (28.3 bits), Expect = 4.8e-05, Sum P(3) = 4.8e-05
Identities = 15/65 (23%), Positives = 33/65 (50%)
Query: 107 EIGKCLVGSGI-VKEIIDFVESKEEIPFAQPIPQYPVIRSRRL-IPSFEEMNETPPGKHI 164
++G+ G+ + E+ D++ + E + F IP +PV ++ L P + ++I
Sbjct: 65 DVGEAFQLMGVSLHELEDYIHNIEPVTFPHQIPSFPVSKNNVLQFPQPGSKDAEERKEYI 124
Query: 165 PSWLP 169
P ++P
Sbjct: 125 PDYMP 129
Score = 51 (23.0 bits), Expect = 4.8e-05, Sum P(3) = 4.8e-05
Identities = 27/135 (20%), Positives = 51/135 (37%)
Query: 221 TGTSASRP--ANDEEELLKTGSNPFFAKPLQSGEKDI-SPVGLPAKLKDKMSGGNHMSVM 277
+G+ ++ P + K+GS P PL G + + A + D++ M
Sbjct: 427 SGSDSATPKASTSSNNFPKSGSTPL---PLSGGTSSSDNSWTMDASI-DEVVRKAKMGTP 482
Query: 278 EAFAPAIEAVKVSGFSDDADGDRRYLPEKRPAVHFKFRAGKKFLGEILDSSLQKKGGRRS 337
+ P+ + S + E++P KK E L + ++KK +R
Sbjct: 483 PSMPPSFPYISSPSVSPPTPEPAHKVYEEKPKPPASLDVKKKLKKE-LKTKMKKKEKQRD 541
Query: 338 ASFWRDEEKDDKKRR 352
RD+ K+ K +
Sbjct: 542 KERDRDKSKEKSKEK 556
Score = 40 (19.1 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 164 IPSWLPAFPDP-HTYIYTPMWNERKSDPRADKIELARQRRK 203
+PS P P+ P ERK D + K + +++ K
Sbjct: 678 LPSLTPVLPEKLFEEKEKPKEKERKKDKKEKKKKKEKEKEK 718
Score = 38 (18.4 bits), Expect = 0.00059, Sum P(4) = 0.00059
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 303 LPEKRPAVHFKFRAGKKFLGEILDSSLQKKGGRRSASFWRDEEKDDKKRRAEFILKQSIE 362
LP PA + A L +L L ++ + + ++K+ KK++ + K+ E
Sbjct: 663 LPLFSPAAAMRITAVLPSLTPVLPEKLFEEKEKPKEKERKKDKKEKKKKKEKEKEKEKKE 722
Query: 363 NPQE 366
+E
Sbjct: 723 KERE 726
Score = 38 (18.4 bits), Expect = 0.00059, Sum P(4) = 0.00059
Identities = 17/76 (22%), Positives = 32/76 (42%)
Query: 212 QQRLVCNGETGTSASR-PANDEEELLKT---GSNPFFAK-PLQSGEKDISPVGLPAKLKD 266
++++ +G T A + P +++EL + F K PL S E + P +L
Sbjct: 140 EEQVPTDGGTSAEAMQVPLEEDDELEEEEIINDENFLGKRPLDSPEAEEMPAMKRPRLLS 199
Query: 267 KMSGGNHMSVMEAFAP 282
+ ++EA P
Sbjct: 200 TKGDALDVVLLEAREP 215
Score = 37 (18.1 bits), Expect = 0.00074, Sum P(4) = 0.00074
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 303 LPEKRPAVHFKFRAGKKFLGEILDSSLQKKGGRRSASFWRDEEKDDKKRRAEFILKQSIE 362
LP P + K K+ E + KK ++ +++EK +K+R E ++ E
Sbjct: 678 LPSLTPVLPEKLFEEKEKPKE-KERKKDKKEKKKKKEKEKEKEKKEKEREKEKREREKRE 736
Query: 363 NPQE 366
+E
Sbjct: 737 KEKE 740
>UNIPROTKB|Q5F489 [details] [associations]
symbol:TAF3 "Transcription initiation factor TFIID subunit
3" species:9031 "Gallus gallus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001965 InterPro:IPR019787 Pfam:PF00628 PROSITE:PS50016
SMART:SM00249 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 eggNOG:NOG308418 InterPro:IPR006565 Pfam:PF07524
SMART:SM00576 EMBL:AJ851411 IPI:IPI00573245 RefSeq:NP_001026012.1
UniGene:Gga.8090 ProteinModelPortal:Q5F489 SMR:Q5F489 STRING:Q5F489
GeneID:419107 KEGG:gga:419107 CTD:83860 HOGENOM:HOG000231905
HOVERGEN:HBG083188 InParanoid:Q5F489 KO:K14650 OrthoDB:EOG4V9TQC
NextBio:20822213 Uniprot:Q5F489
Length = 930
Score = 101 (40.6 bits), Expect = 7.3e-05, Sum P(3) = 7.3e-05
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 26 EDFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECN 85
E +SR + +++VAQIC+++G+ + SA D L+D+ RY+ LG+ L RT+
Sbjct: 3 ETYSRWLLRVSVAQICQALGWDSVQVSACDLLTDVLQRYLQGLGRGCHRYCELYGRTDPI 62
Query: 86 LFDI 89
L D+
Sbjct: 63 LDDV 66
Score = 69 (29.3 bits), Expect = 7.3e-05, Sum P(3) = 7.3e-05
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 107 EIGKCLVGSGI-VKEIIDFVESKEEIPFAQPIPQYPVIRSRRL-IPSFEEMNETPPGKHI 164
++G G+ + E+ D++ + E + FA IP +PV ++ L P + ++I
Sbjct: 65 DVGDAFKLMGVNLHELEDYIHNIEPVTFAHQIPSFPVSKNNVLQFPQPGSKDAEERKEYI 124
Query: 165 PSWLP 169
P ++P
Sbjct: 125 PDYMP 129
Score = 45 (20.9 bits), Expect = 7.3e-05, Sum P(3) = 7.3e-05
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 332 KGGRRSASF-WRDEEKDDKKRRAEFILK 358
K G + A F W++ KDD+ +F LK
Sbjct: 566 KEGNKEAKFQWKELLKDDEHDPYKFKLK 593
Score = 37 (18.1 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 318 KKFLGEILDSSLQKKGGRRSASFWRDEEKDDKKRR 352
KK L + L + ++KK ++ + +EK+ +K +
Sbjct: 524 KKKLKKELKTKMKKKEKQKEKDKEKSKEKNKEKEK 558
Score = 37 (18.1 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 14/52 (26%), Positives = 20/52 (38%)
Query: 303 LPEKRPAVHFKFRAGKKFLGEILDSSLQKKGGRRSASFWRDEEKDDKKRRAE 354
LP P + K K+ E +KK + E+KD +K R E
Sbjct: 678 LPSLSPMLPEKLFEDKEKPKEKKKDKKEKKKKKEREKDKEKEKKDKEKERKE 729
>UNIPROTKB|Q5VWG9 [details] [associations]
symbol:TAF3 "Transcription initiation factor TFIID subunit
3" species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0002039 "p53 binding" evidence=IEA] [GO:0005669
"transcription factor TFIID complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0051457 "maintenance of protein location in nucleus"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0043433
"negative regulation of sequence-specific DNA binding transcription
factor activity" evidence=IDA] InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00628 PROSITE:PS50016 SMART:SM00249
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 GO:GO:0000122
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0043433 InterPro:IPR019786 PROSITE:PS01359
GO:GO:0051457 EMBL:AL353754 eggNOG:NOG308418 GO:GO:0005669
EMBL:AL390294 InterPro:IPR006565 Pfam:PF07524 SMART:SM00576
CTD:83860 HOGENOM:HOG000231905 HOVERGEN:HBG083188 KO:K14650
OrthoDB:EOG4V9TQC EMBL:AJ292190 EMBL:AL159172 EMBL:BC017320
EMBL:BC045106 EMBL:BC073884 EMBL:BC062352 EMBL:AL117661
IPI:IPI00853240 PIR:T17342 RefSeq:NP_114129.1 UniGene:Hs.527688
UniGene:Hs.709995 ProteinModelPortal:Q5VWG9 SMR:Q5VWG9
IntAct:Q5VWG9 STRING:Q5VWG9 PhosphoSite:Q5VWG9 DMDM:74747393
PaxDb:Q5VWG9 PRIDE:Q5VWG9 DNASU:83860 Ensembl:ENST00000344293
GeneID:83860 KEGG:hsa:83860 UCSC:uc010qbd.2 GeneCards:GC10P007860
H-InvDB:HIX0025228 H-InvDB:HIX0201494 HGNC:HGNC:17303 MIM:606576
neXtProt:NX_Q5VWG9 PharmGKB:PA38222 InParanoid:Q5VWG9 OMA:FTPKTKT
GenomeRNAi:83860 NextBio:72861 ArrayExpress:Q5VWG9 Bgee:Q5VWG9
CleanEx:HS_TAF3 Genevestigator:Q5VWG9 GermOnline:ENSG00000165632
Uniprot:Q5VWG9
Length = 929
Score = 100 (40.3 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 26 EDFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECN 85
E +SR++ +++VAQIC+++G+ + SA L+D+ RY+ LG+ + L RT+
Sbjct: 3 ESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPI 62
Query: 86 LFDI 89
L D+
Sbjct: 63 LDDV 66
Score = 68 (29.0 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 107 EIGKCLVGSGI-VKEIIDFVESKEEIPFAQPIPQYPVIRSRRL-IPSFEEMNETPPGKHI 164
++G+ G+ + E+ D++ + E + F IP +PV ++ L P + ++I
Sbjct: 65 DVGEAFQLMGVSLHELEDYIHNIEPVTFPHQIPSFPVSKNNVLQFPQPGSKDAEERKEYI 124
Query: 165 PSWLP 169
P +LP
Sbjct: 125 PDYLP 129
Score = 45 (20.9 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 318 KKFLGEILDSSLQKKGGRRSASFWRDEEKDDKKRR 352
KK L + L + ++KK +R +D+ KD K +
Sbjct: 522 KKKLKKELKTKMKKKEKQRDREREKDKNKDKSKEK 556
>MGI|MGI:2388097 [details] [associations]
symbol:Taf3 "TAF3 RNA polymerase II, TATA box binding
protein (TBP)-associated factor" species:10090 "Mus musculus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISO;IDA] [GO:0002039 "p53 binding"
evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005669 "transcription
factor TFIID complex" evidence=ISO;ISA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043433 "negative regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO;IDA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0051457 "maintenance of protein
location in nucleus" evidence=ISO] InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00628 PROSITE:PS50016 SMART:SM00249
MGI:MGI:2388097 GO:GO:0046872 GO:GO:0008270 GO:GO:0000122
GO:GO:0006366 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0043433 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0051457 eggNOG:NOG308418 GO:GO:0005669
InterPro:IPR006565 Pfam:PF07524 SMART:SM00576 CTD:83860
HOGENOM:HOG000231905 HOVERGEN:HBG083188 KO:K14650 OMA:FTPKTKT
EMBL:AJ292189 EMBL:AK084574 EMBL:AK136045 EMBL:AK154372
EMBL:BC089030 IPI:IPI00756399 IPI:IPI00757994 RefSeq:NP_082024.2
UniGene:Mm.401602 UniGene:Mm.86343 PDB:2K16 PDB:2K17 PDBsum:2K16
PDBsum:2K17 ProteinModelPortal:Q5HZG4 SMR:Q5HZG4 IntAct:Q5HZG4
STRING:Q5HZG4 PhosphoSite:Q5HZG4 PaxDb:Q5HZG4 PRIDE:Q5HZG4
Ensembl:ENSMUST00000026888 GeneID:209361 KEGG:mmu:209361
UCSC:uc008ihk.2 GeneTree:ENSGT00680000099961 InParanoid:Q5HZG4
EvolutionaryTrace:Q5HZG4 NextBio:372647 Bgee:Q5HZG4
Genevestigator:Q5HZG4 GermOnline:ENSMUSG00000025782 Uniprot:Q5HZG4
Length = 932
Score = 100 (40.3 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 26 EDFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECN 85
E +SR++ +++VAQIC+++G+ + SA L+D+ RY+ LG+ + L RT+
Sbjct: 3 ESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPI 62
Query: 86 LFDI 89
L D+
Sbjct: 63 LDDV 66
Score = 66 (28.3 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 16/65 (24%), Positives = 32/65 (49%)
Query: 107 EIGKCLVGSGI-VKEIIDFVESKEEIPFAQPIPQYPVIRSRRL-IPSFEEMNETPPGKHI 164
++G+ G+ + E+ D++ + E + F IP +PV ++ L P + +I
Sbjct: 65 DVGEAFQLMGVNLHELEDYIHNIEPVTFPHQIPSFPVSKNNVLQFPQPGSKDAEERKDYI 124
Query: 165 PSWLP 169
P +LP
Sbjct: 125 PDYLP 129
Score = 47 (21.6 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 28/130 (21%), Positives = 50/130 (38%)
Query: 158 TPPGKHIPSWLPAF-PDPHTYIYTPMWNERKSDPRADKIELARQRRKAEMALLSLQQRLV 216
+P +P+ LPAF P ++ ++ + + DK E +++ K + ++R
Sbjct: 669 SPSAVRVPAMLPAFSPMLPEKLFEEKEKPKEKERKKDKKEKKKKKEKEKEKEKKEREREK 728
Query: 217 CNGETGTSASRPANDEEELLKTGSNPFFAKPLQSGEKDISPVGLPAKLKDKMSGGNHMSV 276
E + E +K P P SPV +P +L ++ G V
Sbjct: 729 ERREREKREKEKEKHKHEKIKV--EPVIPAP--------SPV-IP-RLTLRVGAGQDKIV 776
Query: 277 MEAFAPAIEA 286
+ PA EA
Sbjct: 777 ISKVVPAPEA 786
Score = 40 (19.1 bits), Expect = 0.00057, Sum P(3) = 0.00057
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 318 KKFLGEILDSSLQKKGGRRSASFWRDEEKDDKKRR 352
KK L + L + L+KK +R R+ K+ K +
Sbjct: 523 KKKLKKELKTKLKKKEKQRDRERERERNKERSKEK 557
Score = 39 (18.8 bits), Expect = 0.00072, Sum P(3) = 0.00072
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 330 QKKGGRRSASFWRDEEKDDKKRRAEFILKQ 359
+K+ G+ WR+ KD+ +F +K+
Sbjct: 566 EKEAGKELKYPWRELMKDEDSDPYKFKIKE 595
>RGD|2324594 [details] [associations]
symbol:Taf3 "TAF3 RNA polymerase II, TATA box binding protein
(TBP)-associated factor, 140kDa" species:10116 "Rattus norvegicus"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0002039 "p53 binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005669
"transcription factor TFIID complex" evidence=ISO] [GO:0005753
"mitochondrial proton-transporting ATP synthase complex"
evidence=IEA] [GO:0015986 "ATP synthesis coupled proton transport"
evidence=IEA] [GO:0043433 "negative regulation of sequence-specific
DNA binding transcription factor activity" evidence=ISO]
[GO:0045261 "proton-transporting ATP synthase complex, catalytic
core F(1)" evidence=IEA] [GO:0046933 "proton-transporting ATP
synthase activity, rotational mechanism" evidence=IEA] [GO:0046961
"proton-transporting ATPase activity, rotational mechanism"
evidence=IEA] [GO:0051457 "maintenance of protein location in
nucleus" evidence=ISO] InterPro:IPR000131 Pfam:PF00231
PRINTS:PR00126 RGD:2324594 RGD:620011 GO:GO:0046933 GO:GO:0046961
GO:GO:0015986 GO:GO:0045261 InterPro:IPR023632 InterPro:IPR023633
PANTHER:PTHR11693 SUPFAM:SSF52943 TIGRFAMs:TIGR01146
PROSITE:PS00153 GeneTree:ENSGT00390000006837 OrthoDB:EOG4FJ899
UniGene:Rn.63959 InterPro:IPR006565 Pfam:PF07524 SMART:SM00576
EMBL:AY539950 IPI:IPI00454288 SMR:Q6QI09 STRING:Q6QI09
Ensembl:ENSRNOT00000041346 HOGENOM:HOG000143453
Genevestigator:Q6QI09 Uniprot:Q6QI09
Length = 607
Score = 100 (40.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 26 EDFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECN 85
E +SR++ +++VAQIC+++G+ + SA L+D+ RY+ LG+ + L RT+
Sbjct: 336 ESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPI 395
Query: 86 LFDI 89
L D+
Sbjct: 396 LDDV 399
Score = 67 (28.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 33/143 (23%), Positives = 60/143 (41%)
Query: 107 EIGKCLVGSGI-VKEIIDFVESKEEIPFAQPIPQYPVIRSRRL-IPSFEEMNETPPGKHI 164
++G+ G+ + E+ D++ + E + F IP +PV ++ L P + +I
Sbjct: 398 DVGEAFQLMGVNLHELEDYIHNIEPVTFPHQIPSFPVSKNSVLQFPQPGSKDAEERKDYI 457
Query: 165 PSWLPAFPDPHTYIYTPMWNERKSDPRADKIELARQR-------RKAEMALL---SLQQR 214
P +LP + P+ +R S +I R R R AE+ S ++R
Sbjct: 458 PDYLPPIVSSQEGMPGPL--QRPSYFLGLEIGTVRSRDVAAADRRWAEICAADRASFERR 515
Query: 215 LVCNGETGTSASRPANDEEELLK 237
+V + G S A D ++ K
Sbjct: 516 IVIVTQAGDRGSHSALDLVDVFK 538
>UNIPROTKB|Q6QI09 [details] [associations]
symbol:Taf3 "ATP synthase gamma chain" species:10116
"Rattus norvegicus" [GO:0015986 "ATP synthesis coupled proton
transport" evidence=IEA] [GO:0046933 "proton-transporting ATP
synthase activity, rotational mechanism" evidence=IEA] [GO:0046961
"proton-transporting ATPase activity, rotational mechanism"
evidence=IEA] InterPro:IPR000131 Pfam:PF00231 PRINTS:PR00126
RGD:2324594 RGD:620011 GO:GO:0046933 GO:GO:0046961 GO:GO:0015986
GO:GO:0045261 InterPro:IPR023632 InterPro:IPR023633
PANTHER:PTHR11693 SUPFAM:SSF52943 TIGRFAMs:TIGR01146
PROSITE:PS00153 GeneTree:ENSGT00390000006837 OrthoDB:EOG4FJ899
UniGene:Rn.63959 InterPro:IPR006565 Pfam:PF07524 SMART:SM00576
EMBL:AY539950 IPI:IPI00454288 SMR:Q6QI09 STRING:Q6QI09
Ensembl:ENSRNOT00000041346 HOGENOM:HOG000143453
Genevestigator:Q6QI09 Uniprot:Q6QI09
Length = 607
Score = 100 (40.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 26 EDFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECN 85
E +SR++ +++VAQIC+++G+ + SA L+D+ RY+ LG+ + L RT+
Sbjct: 336 ESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPI 395
Query: 86 LFDI 89
L D+
Sbjct: 396 LDDV 399
Score = 67 (28.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 33/143 (23%), Positives = 60/143 (41%)
Query: 107 EIGKCLVGSGI-VKEIIDFVESKEEIPFAQPIPQYPVIRSRRL-IPSFEEMNETPPGKHI 164
++G+ G+ + E+ D++ + E + F IP +PV ++ L P + +I
Sbjct: 398 DVGEAFQLMGVNLHELEDYIHNIEPVTFPHQIPSFPVSKNSVLQFPQPGSKDAEERKDYI 457
Query: 165 PSWLPAFPDPHTYIYTPMWNERKSDPRADKIELARQR-------RKAEMALL---SLQQR 214
P +LP + P+ +R S +I R R R AE+ S ++R
Sbjct: 458 PDYLPPIVSSQEGMPGPL--QRPSYFLGLEIGTVRSRDVAAADRRWAEICAADRASFERR 515
Query: 215 LVCNGETGTSASRPANDEEELLK 237
+V + G S A D ++ K
Sbjct: 516 IVIVTQAGDRGSHSALDLVDVFK 538
>ASPGD|ASPL0000043084 [details] [associations]
symbol:AN10317 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] EMBL:BN001307 InterPro:IPR006565 Pfam:PF07524
InterPro:IPR019473 Pfam:PF10406 EnsemblFungi:CADANIAT00009251
HOGENOM:HOG000199622 Uniprot:C8VPK5
Length = 351
Score = 115 (45.5 bits), Expect = 0.00055, P = 0.00055
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 129 EEIPFAQPIPQYPVIRSRRLIPSFE-EMN---ETPPGKHIPSWLPAFPDPHTYIYTPMWN 184
E P P P P +++PS E E++ + +IP P FP HTY +TP++
Sbjct: 141 EPTPTLLPSPP-PEEDDFKILPSLEPELSGEDDRARSTYIPKHFPEFPSKHTYRHTPVYT 199
Query: 185 ERKSDPRADKIELARQRRKAEMALLSLQQRLVCNGETGT 223
ER+ DPR + A R E AL L + + + G+
Sbjct: 200 ERERDPRKIRERAADDGRHGEEALRKLARAAFKDNQAGS 238
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 370 351 0.00078 117 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 608 (65 KB)
Total size of DFA: 225 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.93u 0.11s 31.04t Elapsed: 00:00:01
Total cpu time: 30.94u 0.11s 31.05t Elapsed: 00:00:01
Start: Sat May 11 16:01:29 2013 End: Sat May 11 16:01:30 2013