Query 017508
Match_columns 370
No_of_seqs 184 out of 347
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 15:33:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017508.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017508hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yfw_B Histone H4, H4; cell cy 99.0 7.7E-10 2.6E-14 91.7 6.6 77 26-102 24-101 (103)
2 1tzy_D Histone H4-VI; histone- 98.9 8.6E-10 2.9E-14 91.4 5.7 71 32-102 30-101 (103)
3 1id3_B Histone H4; nucleosome 98.8 3.2E-09 1.1E-13 87.9 5.1 72 28-99 25-96 (102)
4 1taf_A TFIID TBP associated fa 98.7 5.9E-08 2E-12 74.8 9.0 61 35-95 5-65 (68)
5 2hue_C Histone H4; mini beta s 98.7 2.9E-08 9.9E-13 79.3 7.3 70 33-102 12-82 (84)
6 1ku5_A HPHA, archaeal histon; 98.4 5.9E-07 2E-11 69.0 7.9 61 34-94 9-69 (70)
7 4dra_A Centromere protein S; D 98.3 8.8E-07 3E-11 74.4 7.0 74 23-96 19-95 (113)
8 3b0b_B CENP-S, centromere prot 98.3 8.4E-07 2.9E-11 74.0 6.7 69 30-98 18-89 (107)
9 3v9r_A MHF1, uncharacterized p 98.3 1.8E-06 6.3E-11 69.9 8.4 67 29-96 10-80 (90)
10 3b0c_T CENP-T, centromere prot 98.3 1.4E-06 4.9E-11 73.0 7.7 66 34-99 10-75 (111)
11 3vh5_A CENP-S; histone fold, c 98.2 2.3E-06 7.9E-11 74.2 7.5 68 30-97 18-88 (140)
12 1taf_B TFIID TBP associated fa 98.2 5.4E-06 1.9E-10 64.1 8.5 60 35-94 10-69 (70)
13 2ly8_A Budding yeast chaperone 98.1 5.8E-06 2E-10 70.3 7.4 61 42-102 58-119 (121)
14 2l5a_A Histone H3-like centrom 98.1 4.2E-06 1.4E-10 78.2 6.6 73 30-102 160-233 (235)
15 1b67_A Protein (histone HMFA); 97.9 5E-05 1.7E-09 57.6 8.1 61 36-96 7-67 (68)
16 1f1e_A Histone fold protein; a 97.7 7.5E-05 2.6E-09 65.9 7.9 65 35-99 8-73 (154)
17 1f1e_A Histone fold protein; a 97.7 9.4E-05 3.2E-09 65.3 8.0 62 35-96 86-147 (154)
18 1n1j_A NF-YB; histone-like PAI 97.6 0.00029 9.9E-09 56.7 9.2 65 35-99 12-78 (93)
19 1jfi_B DR1 protein, transcript 97.3 0.0018 6.1E-08 58.4 10.7 65 35-99 19-84 (179)
20 2byk_B Chrac-14; nucleosome sl 97.1 0.0025 8.5E-08 54.5 9.8 64 36-99 14-79 (128)
21 3b0c_W CENP-W, centromere prot 97.1 0.0022 7.4E-08 49.8 8.3 61 36-96 9-70 (76)
22 3nqj_A Histone H3-like centrom 96.8 0.008 2.8E-07 47.7 9.3 52 48-99 27-78 (82)
23 2hue_B Histone H3; mini beta s 96.7 0.0079 2.7E-07 47.2 8.3 51 47-97 24-74 (77)
24 3nqu_A Histone H3-like centrom 96.6 0.0079 2.7E-07 52.2 8.7 52 48-99 85-136 (140)
25 3r45_A Histone H3-like centrom 96.4 0.007 2.4E-07 53.3 7.3 66 34-99 84-152 (156)
26 2yfv_A Histone H3-like centrom 96.1 0.017 5.9E-07 47.3 7.4 47 48-94 52-98 (100)
27 1tzy_C Histone H3; histone-fol 95.8 0.032 1.1E-06 48.1 8.2 51 47-97 83-133 (136)
28 1n1j_B NF-YC; histone-like PAI 95.5 0.035 1.2E-06 44.9 7.1 62 36-97 24-86 (97)
29 2nqb_D Histone H2B; nucleosome 94.0 0.17 5.8E-06 42.9 7.7 60 37-96 39-99 (123)
30 1tzy_B Histone H2B; histone-fo 93.9 0.19 6.4E-06 42.8 7.7 60 37-96 42-102 (126)
31 2nqb_C Histone H2A; nucleosome 93.5 0.23 7.9E-06 42.0 7.7 69 27-95 16-88 (123)
32 2f8n_G Core histone macro-H2A. 93.1 0.27 9.2E-06 41.4 7.5 68 28-95 16-87 (120)
33 1tzy_A Histone H2A-IV; histone 93.0 0.3 1E-05 41.6 7.6 69 27-95 18-90 (129)
34 1jfi_A Transcription regulator 92.7 0.13 4.3E-06 41.8 4.7 59 37-95 17-76 (98)
35 1f66_C Histone H2A.Z; nucleoso 92.5 0.33 1.1E-05 41.3 7.2 70 26-95 19-93 (128)
36 2f8n_K Histone H2A type 1; nuc 92.5 0.34 1.1E-05 42.4 7.4 69 27-95 37-109 (149)
37 4g92_C HAPE; transcription fac 92.3 0.36 1.2E-05 40.4 7.1 60 37-96 47-107 (119)
38 1id3_C Histone H2A.1; nucleoso 92.1 0.32 1.1E-05 41.6 6.7 59 37-95 31-90 (131)
39 2jss_A Chimera of histone H2B. 90.5 1.2 4E-05 40.2 9.1 60 36-95 8-68 (192)
40 2l5a_A Histone H3-like centrom 87.7 0.91 3.1E-05 42.4 6.4 52 48-99 36-87 (235)
41 2jss_A Chimera of histone H2B. 87.3 1.7 5.9E-05 39.1 7.8 59 37-95 111-171 (192)
42 1h3o_B Transcription initiatio 85.6 2.7 9.3E-05 32.6 7.1 60 33-95 11-70 (76)
43 2byk_A Chrac-16; nucleosome sl 83.3 2 7E-05 36.9 6.0 60 37-96 25-86 (140)
44 4dra_E Centromere protein X; D 74.4 22 0.00074 28.0 8.9 61 34-95 15-79 (84)
45 3uk6_A RUVB-like 2; hexameric 67.1 26 0.0009 32.6 9.5 60 35-95 266-329 (368)
46 3b0b_C CENP-X, centromere prot 62.5 26 0.0009 27.3 7.1 59 36-95 13-75 (81)
47 3k1j_A LON protease, ATP-depen 51.5 80 0.0027 32.3 10.6 59 37-95 302-374 (604)
48 1g8p_A Magnesium-chelatase 38 50.4 81 0.0028 28.8 9.6 52 44-96 264-322 (350)
49 2ly8_A Budding yeast chaperone 49.0 36 0.0012 28.5 6.2 35 48-82 26-60 (121)
50 3kw6_A 26S protease regulatory 48.5 14 0.00049 27.4 3.3 46 51-96 24-73 (78)
51 2c9o_A RUVB-like 1; hexameric 44.3 78 0.0027 31.1 8.9 61 35-96 373-437 (456)
52 3bos_A Putative DNA replicatio 43.6 81 0.0028 26.7 7.9 58 35-94 181-241 (242)
53 1h3o_A Transcription initiatio 42.2 42 0.0014 25.8 5.1 48 31-78 6-53 (75)
54 1bh9_B TAFII28; histone fold, 41.8 1.1E+02 0.0036 24.1 7.6 65 30-98 19-84 (89)
55 3vlf_B 26S protease regulatory 39.8 29 0.00099 26.5 4.0 46 53-98 24-73 (88)
56 1in4_A RUVB, holliday junction 37.6 1.2E+02 0.004 28.3 8.7 66 33-99 185-253 (334)
57 2chg_A Replication factor C sm 36.2 94 0.0032 25.5 7.0 58 34-94 167-224 (226)
58 2r44_A Uncharacterized protein 35.4 81 0.0028 28.9 7.1 48 49-96 227-297 (331)
59 1ich_A TNF-1, tumor necrosis f 31.1 1.5E+02 0.0051 24.3 7.1 50 50-99 38-88 (112)
60 2v1u_A Cell division control p 30.9 1.8E+02 0.0062 26.5 8.7 50 48-97 222-277 (387)
61 1bh9_A TAFII18; histone fold, 26.2 1.6E+02 0.0055 20.2 6.4 40 35-74 4-44 (45)
62 2lf6_A Effector protein hopab1 25.4 44 0.0015 26.9 2.7 24 81-104 50-73 (101)
63 1fnn_A CDC6P, cell division co 25.1 3.1E+02 0.01 25.1 9.1 49 48-96 214-274 (389)
64 3tl8_B Effector protein hopab2 24.4 50 0.0017 27.2 2.9 36 54-103 54-89 (117)
65 2dzn_B 26S protease regulatory 23.9 80 0.0027 23.5 4.0 32 65-96 37-68 (82)
66 1wwi_A Hypothetical protein TT 23.5 99 0.0034 26.7 4.8 47 42-89 14-60 (148)
67 2nr5_A Hypothetical protein SO 22.7 75 0.0026 23.1 3.3 45 193-241 7-51 (67)
68 3h4m_A Proteasome-activating n 21.0 1.1E+02 0.0039 27.1 5.1 57 38-96 198-258 (285)
69 1njg_A DNA polymerase III subu 20.6 1.9E+02 0.0066 23.8 6.2 56 36-93 193-248 (250)
70 1sxj_D Activator 1 41 kDa subu 20.5 82 0.0028 28.8 4.1 59 36-95 200-262 (353)
71 2qby_A CDC6 homolog 1, cell di 20.1 4.8E+02 0.016 23.5 9.6 51 47-97 217-273 (386)
72 2qby_B CDC6 homolog 3, cell di 20.1 2.4E+02 0.0082 25.9 7.3 48 48-97 218-271 (384)
No 1
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.96 E-value=7.7e-10 Score=91.65 Aligned_cols=77 Identities=12% Similarity=0.222 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccc-ccc
Q 017508 26 EDFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVL-KGF 102 (370)
Q Consensus 26 ddf~r~lLr~aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~-~gf 102 (370)
-+-.+.+-...|..|+++.|+..++..|.+.|.+++..|+.+|+..|..||+|++|++++..||.+||+.+|.+ .||
T Consensus 24 r~~~~gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lYGf 101 (103)
T 2yfw_B 24 RDNIQGITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGF 101 (103)
T ss_dssp ------CCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC------
T ss_pred hhhhccCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCcCC
Confidence 34444577889999999999999999999999999999999999999999999999999999999999999865 344
No 2
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.93 E-value=8.6e-10 Score=91.35 Aligned_cols=71 Identities=11% Similarity=0.207 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccc-ccc
Q 017508 32 VSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVL-KGF 102 (370)
Q Consensus 32 lLr~aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~-~gf 102 (370)
+-...|..|+++.|+..++..|.+.|.+++..|+.+|++.|..||+|++|++++..||.+||+.+|.+ .||
T Consensus 30 ip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lYGf 101 (103)
T 1tzy_D 30 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGF 101 (103)
T ss_dssp SCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEESC
T ss_pred CCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCcCC
Confidence 67789999999999999999999999999999999999999999999999999999999999999876 455
No 3
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.81 E-value=3.2e-09 Score=87.86 Aligned_cols=72 Identities=10% Similarity=0.154 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccc
Q 017508 28 FSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVL 99 (370)
Q Consensus 28 f~r~lLr~aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~ 99 (370)
-.+.|-..+|..|+++.|...++..|.+.|.+++..||.++++.|..||+|++|.+++..||.+||+.+|.+
T Consensus 25 ~i~~ip~~~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~ 96 (102)
T 1id3_B 25 NIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRT 96 (102)
T ss_dssp CGGGSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCC
T ss_pred ccCCCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCC
Confidence 344467788999999999999999999999999999999999999999999999999999999999999876
No 4
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.71 E-value=5.9e-08 Score=74.77 Aligned_cols=61 Identities=18% Similarity=0.286 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHh
Q 017508 35 MAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIED 95 (370)
Q Consensus 35 ~aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~ 95 (370)
++|.+||+++|-+.+++.+...|.+++.+|..+|++.+..||+||||.+++..||.+|.+.
T Consensus 5 ~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 4789999999999999999999999999999999999999999999999999999999864
No 5
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.70 E-value=2.9e-08 Score=79.26 Aligned_cols=70 Identities=11% Similarity=0.196 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccc-ccc
Q 017508 33 SKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVL-KGF 102 (370)
Q Consensus 33 Lr~aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~-~gf 102 (370)
-..+|..|+++.|...++..|.+.|.+++..|+.++++.|..||+|++|.+++..||.+||+.+|.+ .||
T Consensus 12 p~~~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lYgf 82 (84)
T 2hue_C 12 TKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGF 82 (84)
T ss_dssp CHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEESC
T ss_pred CHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCCCC
Confidence 3457889999999999999999999999999999999999999999999999999999999999876 344
No 6
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.44 E-value=5.9e-07 Score=69.02 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=57.5
Q ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 017508 34 KMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIE 94 (370)
Q Consensus 34 r~aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~ 94 (370)
...|..|++..|-..++..|.+.|.+++..|+.++...+..||+|++|.+++..||.+|++
T Consensus 9 ~a~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 9 IAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred hHHHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 3468888999999999999999999999999999999999999999999999999999985
No 7
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.33 E-value=8.8e-07 Score=74.42 Aligned_cols=74 Identities=22% Similarity=0.238 Sum_probs=66.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHcCCCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 017508 23 PKAEDFSRAVSKMAVAQICESVGFQG---FKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDL 96 (370)
Q Consensus 23 ~~~ddf~r~lLr~aVaqIL~~~GF~s---~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~m 96 (370)
.+..+-..+-|.-.|++||++.|=+. +++.|+..|++++.+|+.+|+..+..||.||||.+++..||.++++..
T Consensus 19 ~~~~~rLKaal~y~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~ 95 (113)
T 4dra_A 19 FSYQQRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS 95 (113)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC
Confidence 34445556677889999999998766 999999999999999999999999999999999999999999999874
No 8
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.32 E-value=8.4e-07 Score=74.00 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHcCC---CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhccc
Q 017508 30 RAVSKMAVAQICESVGF---QGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEV 98 (370)
Q Consensus 30 r~lLr~aVaqIL~~~GF---~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi 98 (370)
.+-+.-+|.+||+..|= ..+++.+...|++++.+|+.+|+..+..||.||||.+++..||.++++....
T Consensus 18 Kaal~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~ 89 (107)
T 3b0b_B 18 RAAVHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNS 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHH
Confidence 34455669999999986 5799999999999999999999999999999999999999999999988643
No 9
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=1.8e-06 Score=69.86 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHc----CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 017508 29 SRAVSKMAVAQICESV----GFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDL 96 (370)
Q Consensus 29 ~r~lLr~aVaqIL~~~----GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~m 96 (370)
..+-+.-+|++||++. |.. +++.|+..|++++.+|+.+++..+..||.||||.+++..||.++++..
T Consensus 10 LKaal~~~V~ki~~e~~~~~g~~-vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn 80 (90)
T 3v9r_A 10 LKARLWIRVEERLQQVLSSEDIK-YTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQ 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhcCce-eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 3456677899999998 443 899999999999999999999999999999999999999999998763
No 10
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.30 E-value=1.4e-06 Score=72.96 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=61.0
Q ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccc
Q 017508 34 KMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVL 99 (370)
Q Consensus 34 r~aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~ 99 (370)
..+|..|.+..|-..++..|.+.|.+++..|+.++++.+..||+|++|.+++..||.+||+..|..
T Consensus 10 ~a~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 10 SSLIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp CHHHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 446677788888899999999999999999999999999999999999999999999999998776
No 11
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.23 E-value=2.3e-06 Score=74.22 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHcCCCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcc
Q 017508 30 RAVSKMAVAQICESVGFQG---FKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLE 97 (370)
Q Consensus 30 r~lLr~aVaqIL~~~GF~s---~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mG 97 (370)
.+-|.-+|++||++.|-.. +++.|+..|++++.+|+.+|+..+..||.||||.+++..||.++++...
T Consensus 18 KaAl~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~ 88 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSN 88 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCH
Confidence 4456678999999875443 8899999999999999999999999999999999999999999998753
No 12
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.21 E-value=5.4e-06 Score=64.13 Aligned_cols=60 Identities=20% Similarity=0.193 Sum_probs=57.5
Q ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 017508 35 MAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIE 94 (370)
Q Consensus 35 ~aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~ 94 (370)
..|-.|++++|++.++..|...|.+-+..++.+|.+.+..|+.|++|+..+..||.+||+
T Consensus 10 ~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 10 ESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 467889999999999999999999999999999999999999999999999999999985
No 13
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.11 E-value=5.8e-06 Score=70.29 Aligned_cols=61 Identities=11% Similarity=0.159 Sum_probs=56.9
Q ss_pred HHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccc-ccc
Q 017508 42 ESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVL-KGF 102 (370)
Q Consensus 42 ~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~-~gf 102 (370)
...|-..++..+.+.+.+++..|+.+|.+.+-.||+|++|.+++..||.+||+..|.+ .||
T Consensus 58 ~~gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~lygf 119 (121)
T 2ly8_A 58 VPRGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGF 119 (121)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGGGC
T ss_pred CccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCCCC
Confidence 3478889999999999999999999999999999999999999999999999999988 455
No 14
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.08 E-value=4.2e-06 Score=78.19 Aligned_cols=73 Identities=11% Similarity=0.173 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccc-ccc
Q 017508 30 RAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVL-KGF 102 (370)
Q Consensus 30 r~lLr~aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~-~gf 102 (370)
+.++.+.+..+++..|-..++..+.+.+.+++..|+.+|++.|-.||+||+|.+++..||.+||+.+|-+ .||
T Consensus 160 rD~i~i~~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~gr~lYGf 233 (235)
T 2l5a_A 160 RDIIDISDEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGF 233 (235)
T ss_dssp HHHHHHTCCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHhhcccHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcCCccccC
Confidence 3344433346788899999999999999999999999999999999999999999999999999999876 344
No 15
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=97.87 E-value=5e-05 Score=57.63 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=54.8
Q ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 017508 36 AVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDL 96 (370)
Q Consensus 36 aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~m 96 (370)
.|..|+++.|=..++..|++.|.+.+..||..|...+..+|.|++|.+.+..||..|++.+
T Consensus 7 ~v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 7 PIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 3555666667678999999999999999999999999999999999999999999999875
No 16
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.72 E-value=7.5e-05 Score=65.94 Aligned_cols=65 Identities=12% Similarity=0.032 Sum_probs=61.6
Q ss_pred HHHHHHHHHc-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccc
Q 017508 35 MAVAQICESV-GFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVL 99 (370)
Q Consensus 35 ~aVaqIL~~~-GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~ 99 (370)
..|..|++.. |-..++..|-+.|.+++..|+..+.+.+..||+|++|.+++..||..||..+|+.
T Consensus 8 a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~ 73 (154)
T 1f1e_A 8 AAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVE 73 (154)
T ss_dssp HHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCT
T ss_pred cHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccc
Confidence 4678888888 9999999999999999999999999999999999999999999999999998876
No 17
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.69 E-value=9.4e-05 Score=65.30 Aligned_cols=62 Identities=19% Similarity=0.211 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 017508 35 MAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDL 96 (370)
Q Consensus 35 ~aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~m 96 (370)
..|..|++..|-..++..|.+.|.+++..|+..|.+.+..||+|++|.+++..||.+||+..
T Consensus 86 a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 86 ATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp HHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 45889999999999999999999999999999999999999999999999999999999873
No 18
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.61 E-value=0.00029 Score=56.73 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccc
Q 017508 35 MAVAQICESVGF--QGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVL 99 (370)
Q Consensus 35 ~aVaqIL~~~GF--~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~ 99 (370)
..|..|.+..|= ..++..|++.|+..+..||..|+..|..+|.+++|.+.+..||..|++.+|..
T Consensus 12 a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~ 78 (93)
T 1n1j_A 12 ANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFD 78 (93)
T ss_dssp HHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCG
T ss_pred hHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence 346677777754 56899999999999999999999999999999999999999999999988876
No 19
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.26 E-value=0.0018 Score=58.45 Aligned_cols=65 Identities=11% Similarity=0.102 Sum_probs=57.5
Q ss_pred HHHHHHHHHcCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccc
Q 017508 35 MAVAQICESVGF-QGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVL 99 (370)
Q Consensus 35 ~aVaqIL~~~GF-~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~ 99 (370)
..|..|++.++= ..++..|.+.|++.+..||..|+..|...|.+.+|.+++..||..||+.+|+.
T Consensus 19 A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~ 84 (179)
T 1jfi_B 19 AAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFG 84 (179)
T ss_dssp HHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChH
Confidence 355666666642 46889999999999999999999999999999999999999999999999887
No 20
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.13 E-value=0.0025 Score=54.48 Aligned_cols=64 Identities=13% Similarity=0.123 Sum_probs=57.7
Q ss_pred HHHHHHHHcC--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccc
Q 017508 36 AVAQICESVG--FQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVL 99 (370)
Q Consensus 36 aVaqIL~~~G--F~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~ 99 (370)
.|..|++.++ -..++..|...|+..+..||..|+..+..+|.+.+|.+++..||..||..+|..
T Consensus 14 ~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~ 79 (128)
T 2byk_B 14 VIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFE 79 (128)
T ss_dssp HHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence 4667777654 456899999999999999999999999999999999999999999999998875
No 21
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=97.10 E-value=0.0022 Score=49.81 Aligned_cols=61 Identities=7% Similarity=-0.061 Sum_probs=52.1
Q ss_pred HHHHHHHHc-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 017508 36 AVAQICESV-GFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDL 96 (370)
Q Consensus 36 aVaqIL~~~-GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~m 96 (370)
.|..|++++ +=..++..|.+.|.+.+..|+..|+..|...|.+++|.+.+..||..|++.+
T Consensus 9 ~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 9 TLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp HHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 345555532 4235788999999999999999999999999999999999999999999874
No 22
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=96.79 E-value=0.008 Score=47.67 Aligned_cols=52 Identities=17% Similarity=0.055 Sum_probs=47.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccc
Q 017508 48 GFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVL 99 (370)
Q Consensus 48 s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~ 99 (370)
.++.+|+..|.+..+.|+..|...+...|.|++|.+..+.|+.+|.+--|..
T Consensus 27 R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 27 NWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 6889999999999999999999999999999999999999999998876654
No 23
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=96.67 E-value=0.0079 Score=47.18 Aligned_cols=51 Identities=24% Similarity=0.118 Sum_probs=47.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcc
Q 017508 47 QGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLE 97 (370)
Q Consensus 47 ~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mG 97 (370)
..++.+|+..|.+..+.|+..|...+...|.|++|.+..+.|+.+|.+--|
T Consensus 24 ~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 24 LRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 468999999999999999999999999999999999999999999987655
No 24
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=96.61 E-value=0.0079 Score=52.17 Aligned_cols=52 Identities=17% Similarity=0.055 Sum_probs=48.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccc
Q 017508 48 GFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVL 99 (370)
Q Consensus 48 s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~ 99 (370)
.++.+|++.|.+.++.||..|...+...|.||+|.++...||.+|.+--|+.
T Consensus 85 Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~~ 136 (140)
T 3nqu_A 85 NWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 136 (140)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC--
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhcccc
Confidence 5889999999999999999999999999999999999999999999877765
No 25
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=96.43 E-value=0.007 Score=53.30 Aligned_cols=66 Identities=17% Similarity=0.064 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcC---CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccc
Q 017508 34 KMAVAQICESVG---FQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVL 99 (370)
Q Consensus 34 r~aVaqIL~~~G---F~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~ 99 (370)
.+.|..|++... =..++.+|++.|.+.++.||..|...+...|.||+|.++...||.+|.+--|..
T Consensus 84 ~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~~ 152 (156)
T 3r45_A 84 SRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 152 (156)
T ss_dssp HHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHcccc
Confidence 344555554422 125889999999999999999999999999999999999999999999876654
No 26
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=96.06 E-value=0.017 Score=47.34 Aligned_cols=47 Identities=19% Similarity=0.141 Sum_probs=44.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 017508 48 GFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIE 94 (370)
Q Consensus 48 s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~ 94 (370)
.++.+|+..|.+..+.|+..|...+...|.|++|.+....|+.+|.+
T Consensus 52 R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 52 RWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999874
No 27
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=95.78 E-value=0.032 Score=48.15 Aligned_cols=51 Identities=24% Similarity=0.120 Sum_probs=47.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcc
Q 017508 47 QGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLE 97 (370)
Q Consensus 47 ~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mG 97 (370)
..++.+|++.|.+..+.||..|...+...|.|++|.+....||.+|.+--|
T Consensus 83 ~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 83 LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 468999999999999999999999999999999999999999999987655
No 28
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=95.52 E-value=0.035 Score=44.90 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=55.8
Q ss_pred HHHHHHHHcCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcc
Q 017508 36 AVAQICESVGF-QGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLE 97 (370)
Q Consensus 36 aVaqIL~~~GF-~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mG 97 (370)
-|..|++..+. ..++..|...++..++-|+.+|+..+..+|...+|...+..||..|++...
T Consensus 24 rIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e 86 (97)
T 1n1j_B 24 RIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFD 86 (97)
T ss_dssp HHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCG
T ss_pred HHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCc
Confidence 46788888877 569999999999999999999999999999999999999999999987643
No 29
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=94.04 E-value=0.17 Score=42.88 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=53.2
Q ss_pred HHHHHHHcCCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 017508 37 VAQICESVGFQ-GFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDL 96 (370)
Q Consensus 37 VaqIL~~~GF~-s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~m 96 (370)
|-.+|++++-+ +++..|++.|..++...++.|+..|...+.+.+|.+.+..||..|.+.+
T Consensus 39 IyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 39 IYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 34456667767 6899999999999999999999999999999999999999999998764
No 30
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=93.86 E-value=0.19 Score=42.79 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=53.7
Q ss_pred HHHHHHHcCCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 017508 37 VAQICESVGFQ-GFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDL 96 (370)
Q Consensus 37 VaqIL~~~GF~-s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~m 96 (370)
|-.+|++++-+ +++..|++.|..++...++.|+..|...+.+..|.+.+..||..|.+.+
T Consensus 42 IyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 42 VYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 45566677777 6999999999999999999999999999999999999999999998764
No 31
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=93.48 E-value=0.23 Score=41.97 Aligned_cols=69 Identities=10% Similarity=-0.035 Sum_probs=57.9
Q ss_pred HHHHHHHHHH---HHHHHHHc-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHh
Q 017508 27 DFSRAVSKMA---VAQICESV-GFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIED 95 (370)
Q Consensus 27 df~r~lLr~a---VaqIL~~~-GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~ 95 (370)
--.++-|+-- |-.+|+.. +...+..+|-..|+.+++.+..+|...+-.+|.+++|+.+++.||.+|.+.
T Consensus 16 ~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 16 RSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ccccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 3345545433 44557765 788999999999999999999999999999999999999999999999874
No 32
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=93.13 E-value=0.27 Score=41.39 Aligned_cols=68 Identities=6% Similarity=-0.075 Sum_probs=57.2
Q ss_pred HHHHHHHHH---HHHHHHHcC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHh
Q 017508 28 FSRAVSKMA---VAQICESVG-FQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIED 95 (370)
Q Consensus 28 f~r~lLr~a---VaqIL~~~G-F~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~ 95 (370)
-.++-|+-- |..+|+..+ ...+..+|--.|+.+++.+..+|...+-.+|.+++|+.+++.||.+|.+.
T Consensus 16 s~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 16 SAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 345544433 456688888 45799999999999999999999999999999999999999999999874
No 33
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=92.97 E-value=0.3 Score=41.64 Aligned_cols=69 Identities=13% Similarity=-0.023 Sum_probs=57.8
Q ss_pred HHHHHHHHHH---HHHHHHHc-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHh
Q 017508 27 DFSRAVSKMA---VAQICESV-GFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIED 95 (370)
Q Consensus 27 df~r~lLr~a---VaqIL~~~-GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~ 95 (370)
--.++-|+-- |-.+|+.. +...+...|--.|+.+++.+..+|...+-.+|.+++|+.+++.||.+|.+.
T Consensus 18 rS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 18 RSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 3345545433 44557764 788999999999999999999999999999999999999999999999874
No 34
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=92.69 E-value=0.13 Score=41.75 Aligned_cols=59 Identities=10% Similarity=-0.028 Sum_probs=49.5
Q ss_pred HHHHHHHcCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHh
Q 017508 37 VAQICESVGF-QGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIED 95 (370)
Q Consensus 37 VaqIL~~~GF-~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~ 95 (370)
|-.|++..+. ..++..|.-.|+.+++-|+.+|...+..+|...+|...+..||..|.+.
T Consensus 17 IkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~ 76 (98)
T 1jfi_A 17 IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIEL 76 (98)
T ss_dssp HHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-
T ss_pred HHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhc
Confidence 5677787766 6799999999999999999999999999999999999999999888765
No 35
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=92.49 E-value=0.33 Score=41.35 Aligned_cols=70 Identities=9% Similarity=-0.080 Sum_probs=58.8
Q ss_pred hHHHHHHHHHH---HHHHHHHcCC-C-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHh
Q 017508 26 EDFSRAVSKMA---VAQICESVGF-Q-GFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIED 95 (370)
Q Consensus 26 ddf~r~lLr~a---VaqIL~~~GF-~-s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~ 95 (370)
.--.++-|+-- |..+|+..++ . .+..+|--.|+.+++-+..+|...+-.+|.+.+|+.+++.||.+|.+.
T Consensus 19 srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 19 SRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp CHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 34455555444 4567888885 3 799999999999999999999999999999999999999999999875
No 36
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=92.46 E-value=0.34 Score=42.37 Aligned_cols=69 Identities=13% Similarity=-0.026 Sum_probs=58.1
Q ss_pred HHHHHHHHHH---HHHHHHHc-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHh
Q 017508 27 DFSRAVSKMA---VAQICESV-GFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIED 95 (370)
Q Consensus 27 df~r~lLr~a---VaqIL~~~-GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~ 95 (370)
--.++-|+-- |..+|+.. +...+...|-..|+.+++.+..+|...+-.+|..++|+.+++.||.+|.+.
T Consensus 37 rS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 37 RSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 3445545433 45567775 788899999999999999999999999999999999999999999999874
No 37
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=92.26 E-value=0.36 Score=40.39 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=51.6
Q ss_pred HHHHHHHc-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 017508 37 VAQICESV-GFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDL 96 (370)
Q Consensus 37 VaqIL~~~-GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~m 96 (370)
|..|++.. ....++..|...++..++-||..|...|..+|...+|...+..||..|+...
T Consensus 47 IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~ 107 (119)
T 4g92_C 47 IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKS 107 (119)
T ss_dssp HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcC
Confidence 44455543 3456899999999999999999999999999999999999999999999764
No 38
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=92.13 E-value=0.32 Score=41.57 Aligned_cols=59 Identities=12% Similarity=-0.031 Sum_probs=53.2
Q ss_pred HHHHHHH-cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHh
Q 017508 37 VAQICES-VGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIED 95 (370)
Q Consensus 37 VaqIL~~-~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~ 95 (370)
|..+|+. .+...+...|-..|+.+++.+..+|...+-.+|.+++|+.+++.||.+|.+.
T Consensus 31 I~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 31 VHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp HHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 4556666 4778899999999999999999999999999999999999999999999874
No 39
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=90.53 E-value=1.2 Score=40.21 Aligned_cols=60 Identities=8% Similarity=0.088 Sum_probs=52.1
Q ss_pred HHHHHHHHcCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHh
Q 017508 36 AVAQICESVGF-QGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIED 95 (370)
Q Consensus 36 aVaqIL~~~GF-~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~ 95 (370)
.|-.+|++++- .+++..|++.|..++.+.+..|+..+...+.+..|.+.+..||..|.+.
T Consensus 8 yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 8 YIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 34455566655 3589999999999999999999999999999999999999999999875
No 40
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=87.71 E-value=0.91 Score=42.35 Aligned_cols=52 Identities=17% Similarity=0.088 Sum_probs=48.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccc
Q 017508 48 GFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVL 99 (370)
Q Consensus 48 s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~ 99 (370)
.++.+|+..|.+..+.||..|...+...|.|+.|.+..+.|+.+|.+--|..
T Consensus 36 Rfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~ 87 (235)
T 2l5a_A 36 RWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQF 87 (235)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSC
T ss_pred eecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhcc
Confidence 4788999999999999999999999999999999999999999998776654
No 41
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=87.28 E-value=1.7 Score=39.08 Aligned_cols=59 Identities=7% Similarity=-0.105 Sum_probs=51.8
Q ss_pred HHHHHHHc-CC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHh
Q 017508 37 VAQICESV-GF-QGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIED 95 (370)
Q Consensus 37 VaqIL~~~-GF-~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~ 95 (370)
|..+|+.. +. ..+...|-..|+.+++.+..+|...+-.+|.+++|+..++.|+.+|...
T Consensus 111 i~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 111 IKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp HHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred HHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 44566665 44 3789999999999999999999999999999999999999999999874
No 42
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=85.58 E-value=2.7 Score=32.60 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHh
Q 017508 33 SKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIED 95 (370)
Q Consensus 33 Lr~aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~ 95 (370)
|+..|.+|.. =....+.+-|.|.+++..|+.++...+...|-|-+=....+.||.+.|+.
T Consensus 11 L~~Lv~~idp---~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 11 LQDLVREVDP---NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp HHHHHHHHCS---SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred HHHHHHhcCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 4445555533 35578999999999999999999999999999977777789999999986
No 43
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=83.30 E-value=2 Score=36.89 Aligned_cols=60 Identities=8% Similarity=-0.021 Sum_probs=49.2
Q ss_pred HHHHHHHcCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCCCCCHHHHHHHHHhc
Q 017508 37 VAQICESVGF-QGFKDSALDALSDIAIRYICDLGKTSSFQA-NLACRTECNLFDIIRGIEDL 96 (370)
Q Consensus 37 VaqIL~~~GF-~s~~~sALe~Ltdl~~~YL~~L~~~a~~yA-e~agRT~p~~~DV~~AL~~m 96 (370)
|-.|++...- ..++..|.-.++..+.-||..|...+..+| ...+|...+..||..|+...
T Consensus 25 IKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~ 86 (140)
T 2byk_A 25 VRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKN 86 (140)
T ss_dssp ----CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTC
T ss_pred HHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcC
Confidence 4455554432 358999999999999999999999999999 99999999999999999863
No 44
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=74.39 E-value=22 Score=28.02 Aligned_cols=61 Identities=11% Similarity=0.176 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCCC----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHh
Q 017508 34 KMAVAQICESVGFQ----GFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIED 95 (370)
Q Consensus 34 r~aVaqIL~~~GF~----s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~ 95 (370)
...|+.||+ ..|. .++..|+..+++.+.-|+.+-...+...++.-+.......|+...+=.
T Consensus 15 ~~li~ril~-~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 15 KELVSRLLH-LHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp HHHHHHHHH-TTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 345677777 7886 689999999999999999999999998998888888999998876644
No 45
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=67.07 E-value=26 Score=32.60 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHh
Q 017508 35 MAVAQICESVGFQGFKDSALDALSDIAI----RYICDLGKTSSFQANLACRTECNLFDIIRGIED 95 (370)
Q Consensus 35 ~aVaqIL~~~GF~s~~~sALe~Ltdl~~----~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~ 95 (370)
..+...|...|.. +++.+++.|..... +++.++...+..+|...++..++..||..++..
T Consensus 266 ~il~~~~~~~~~~-~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 266 QILRIRCEEEDVE-MSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHHHTTCC-BCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 3444566677776 67889999988885 688899999999999999999999999999986
No 46
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=62.53 E-value=26 Score=27.25 Aligned_cols=59 Identities=10% Similarity=0.167 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCC----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHh
Q 017508 36 AVAQICESVGFQ----GFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIED 95 (370)
Q Consensus 36 aVaqIL~~~GF~----s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~ 95 (370)
.|+.|++. .|. .++.+|+..+.+.+.-|+.+-...+..-+..-|-......|+...+-.
T Consensus 13 lI~ril~~-~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 13 TVERLLRL-HFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp HHHHHHHH-HCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHH-HhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 45666665 676 589999999999999999999888888877777778888888876544
No 47
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=51.46 E-value=80 Score=32.33 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=47.0
Q ss_pred HHHHHHHc-CCCcccHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHh
Q 017508 37 VAQICESV-GFQGFKDSALDALSDIA-------------IRYICDLGKTSSFQANLACRTECNLFDIIRGIED 95 (370)
Q Consensus 37 VaqIL~~~-GF~s~~~sALe~Ltdl~-------------~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~ 95 (370)
+++.+... ..-.+++.|++.|.... .+.+.++.+.+..+|...++..++..||..|+..
T Consensus 302 ~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 302 VAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 34444432 34568899999998755 5788899999999999999999999999999965
No 48
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=50.41 E-value=81 Score=28.80 Aligned_cols=52 Identities=17% Similarity=0.012 Sum_probs=43.6
Q ss_pred cCCCcccHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 017508 44 VGFQGFKDSALDALSDIAI-------RYICDLGKTSSFQANLACRTECNLFDIIRGIEDL 96 (370)
Q Consensus 44 ~GF~s~~~sALe~Ltdl~~-------~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~m 96 (370)
.++ .+++.+++.|.+... +.+..+.+.+..+|...+|..++..||..++...
T Consensus 264 ~~~-~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 264 PKV-EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp GGC-BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 344 578899999988765 6778888889999999999999999999988764
No 49
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=48.98 E-value=36 Score=28.47 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=32.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 017508 48 GFKDSALDALSDIAIRYICDLGKTSSFQANLACRT 82 (370)
Q Consensus 48 s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT 82 (370)
..+.+|+..|.+..+.||-.|...+...|.|+.|.
T Consensus 26 Rfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~g 60 (121)
T 2ly8_A 26 RWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPR 60 (121)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCcc
Confidence 47899999999999999999999999999999664
No 50
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=48.52 E-value=14 Score=27.37 Aligned_cols=46 Identities=9% Similarity=0.061 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 017508 51 DSALDALSDIAIRY----ICDLGKTSSFQANLACRTECNLFDIIRGIEDL 96 (370)
Q Consensus 51 ~sALe~Ltdl~~~Y----L~~L~~~a~~yAe~agRT~p~~~DV~~AL~~m 96 (370)
..-++.|...+..| |..+++.|..+|-..++..++..|+..||..+
T Consensus 24 ~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 24 GINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp TCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 33466666655554 88999999999999999999999999999874
No 51
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=44.31 E-value=78 Score=31.07 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 017508 35 MAVAQICESVGFQGFKDSALDALSDIA-I---RYICDLGKTSSFQANLACRTECNLFDIIRGIEDL 96 (370)
Q Consensus 35 ~aVaqIL~~~GF~s~~~sALe~Ltdl~-~---~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~m 96 (370)
..+...|+..|+. +++.+++.+..+. . ++...+...+..+|...++..++..||..++..+
T Consensus 373 ~iL~~~~~~~~~~-~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 373 QIIKIRAQTEGIN-ISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp HHHHHHHHHHTCC-BCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCC-CCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 3444556667776 6788999988876 3 5788888999999999999999999999998663
No 52
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=43.57 E-value=81 Score=26.69 Aligned_cols=58 Identities=12% Similarity=0.053 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 017508 35 MAVAQICESVGFQGFKDSALDALSDIAI---RYICDLGKTSSFQANLACRTECNLFDIIRGIE 94 (370)
Q Consensus 35 ~aVaqIL~~~GF~s~~~sALe~Ltdl~~---~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~ 94 (370)
..+...++..|+. +++.+++.|..... +.+.++...+..+|...++ .++..||..+|.
T Consensus 181 ~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l~ 241 (242)
T 3bos_A 181 AALQRRAAMRGLQ-LPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQR-KLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHTTCC-CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHhh
Confidence 3455666677875 67789998888765 4566666666677766665 499999988874
No 53
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=42.16 E-value=42 Score=25.83 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017508 31 AVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANL 78 (370)
Q Consensus 31 ~lLr~aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~ 78 (370)
..|+.=|..|....|...+++.+...+.-.++..|.+|.......|.|
T Consensus 6 ~~Lqkri~~I~~k~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~ 53 (75)
T 1h3o_A 6 APLQRRILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQ 53 (75)
T ss_dssp HHHHHHHHHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhcCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 467777889999999999999999999999999999999988777766
No 54
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=41.82 E-value=1.1e+02 Score=24.11 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-HHHHHHHHHhccc
Q 017508 30 RAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECN-LFDIIRGIEDLEV 98 (370)
Q Consensus 30 r~lLr~aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~-~~DV~~AL~~mGi 98 (370)
...+++.|.+++ | .++++.....|.-+..-|+.+|...|....+.-+.+.|. +..|..|++.+..
T Consensus 19 k~~vKrl~~~~~---~-~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~~ 84 (89)
T 1bh9_B 19 KAAIKRLIQSIT---G-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKS 84 (89)
T ss_dssp HHHHHHHHHHHH---S-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc---C-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Confidence 345566666665 3 357789999999999999999999999999887666554 8888888877654
No 55
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=39.79 E-value=29 Score=26.55 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhccc
Q 017508 53 ALDALSDIAIRY----ICDLGKTSSFQANLACRTECNLFDIIRGIEDLEV 98 (370)
Q Consensus 53 ALe~Ltdl~~~Y----L~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi 98 (370)
-++.|...+..| |..|++.|..+|-..++..++..|+..|+..+-.
T Consensus 24 dl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 24 RWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp CHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC
T ss_pred CHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhc
Confidence 355555555444 8889998988888889999999999999998643
No 56
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=37.63 E-value=1.2e+02 Score=28.29 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccc
Q 017508 33 SKMAVAQICESVGFQGFKDSALDALSDIA---IRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVL 99 (370)
Q Consensus 33 Lr~aVaqIL~~~GF~s~~~sALe~Ltdl~---~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~ 99 (370)
+...+..+++..|.. ++..+++.|.+.. .+.+..+...+..||...++..++..++..++..+.++
T Consensus 185 l~~iL~~~~~~~~~~-~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~ 253 (334)
T 1in4_A 185 LKEIIKRAASLMDVE-IEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNID 253 (334)
T ss_dssp HHHHHHHHHHHTTCC-BCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCC-cCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCC
Confidence 344445555666776 5677888877653 35677788888899999998889999999999987765
No 57
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=36.16 E-value=94 Score=25.55 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 017508 34 KMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIE 94 (370)
Q Consensus 34 r~aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~ 94 (370)
+..+..++...|.. +++.+++.|.......+..+...+...+..+ ..++..||..++.
T Consensus 167 ~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 167 KKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 34455667777876 6778888888877666666666666666555 4688899888764
No 58
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=35.43 E-value=81 Score=28.93 Aligned_cols=48 Identities=17% Similarity=0.098 Sum_probs=39.1
Q ss_pred ccHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 017508 49 FKDSALDALSDIA-----------------------IRYICDLGKTSSFQANLACRTECNLFDIIRGIEDL 96 (370)
Q Consensus 49 ~~~sALe~Ltdl~-----------------------~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~m 96 (370)
++..+++.+.+++ .+-+..+.+.++.+|.+.||..++..||..++..+
T Consensus 227 ~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 227 ISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp CCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4667788887765 34556778888999999999999999999998874
No 59
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=31.10 E-value=1.5e+02 Score=24.33 Aligned_cols=50 Identities=18% Similarity=0.044 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccc
Q 017508 50 KDSALDALSDIA-IRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVL 99 (370)
Q Consensus 50 ~~sALe~Ltdl~-~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~ 99 (370)
+..-+|.+..-- ...-+.....++.+.+..||...++.++..||++++..
T Consensus 38 se~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~~~l~ 88 (112)
T 1ich_A 38 SDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDLL 88 (112)
T ss_dssp CHHHHHHHHHHCCSCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHCcCChHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhccH
Confidence 344555444222 22345566677788888999999999999999999987
No 60
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=30.86 E-value=1.8e+02 Score=26.50 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=41.9
Q ss_pred cccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcc
Q 017508 48 GFKDSALDALSDIAI------RYICDLGKTSSFQANLACRTECNLFDIIRGIEDLE 97 (370)
Q Consensus 48 s~~~sALe~Ltdl~~------~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mG 97 (370)
.+++.+++.+..... +++.+++..+..+|...++..++..||..++..+.
T Consensus 222 ~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 222 VLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp TBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 466789999988887 67778888888888888889999999999998763
No 61
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=26.18 E-value=1.6e+02 Score=20.17 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCC-cccHHHHHHHHHHHHHHHHHHHHHHHH
Q 017508 35 MAVAQICESVGFQ-GFKDSALDALSDIAIRYICDLGKTSSF 74 (370)
Q Consensus 35 ~aVaqIL~~~GF~-s~~~sALe~Ltdl~~~YL~~L~~~a~~ 74 (370)
.-|.+++-..|=. .-.+.....|.|++..||.+++..|.+
T Consensus 4 ~ei~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 4 KELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466777777743 355678999999999999999988753
No 62
>2lf6_A Effector protein hopab1; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=25.38 E-value=44 Score=26.91 Aligned_cols=24 Identities=17% Similarity=0.005 Sum_probs=19.6
Q ss_pred CCCCCHHHHHHHHHhccccccccc
Q 017508 81 RTECNLFDIIRGIEDLEVLKGFMG 104 (370)
Q Consensus 81 RT~p~~~DV~~AL~~mGi~~gf~~ 104 (370)
...|.+.||..+|+..||+..+..
T Consensus 50 ~~~piP~Di~raL~~vGI~p~id~ 73 (101)
T 2lf6_A 50 SLEPLPPDLRRALESVGINPFIPE 73 (101)
T ss_dssp SSCCCCHHHHHHHHHHTCCSCCCT
T ss_pred hcCCCCHHHHHHHHcCCCCCCCcc
Confidence 456899999999999999965443
No 63
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=25.08 E-value=3.1e+02 Score=25.06 Aligned_cols=49 Identities=18% Similarity=0.312 Sum_probs=41.1
Q ss_pred cccHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 017508 48 GFKDSALDALSDIA------------IRYICDLGKTSSFQANLACRTECNLFDIIRGIEDL 96 (370)
Q Consensus 48 s~~~sALe~Ltdl~------------~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~m 96 (370)
.+++.+++.+.+.. .+++.+++..+...|...++..++..||..++...
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 214 SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 57789999999888 46778888888888888788899999999988775
No 64
>3tl8_B Effector protein hopab2; plant immunity, solanum lycopersicum, triggered immunity, bacterial pathogenesis, transferase-LIG complex; HET: TPO; 2.50A {Pseudomonas syringae PV}
Probab=24.37 E-value=50 Score=27.21 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccccccc
Q 017508 54 LDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVLKGFM 103 (370)
Q Consensus 54 Le~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~~gf~ 103 (370)
++.|...+.+||. ...|.+.||..+|+..||+..+.
T Consensus 54 merLraAle~~im--------------~~~piP~Di~raL~~VGI~P~id 89 (117)
T 3tl8_B 54 LEHLRTALERHVM--------------QRLPIPLDIGSALQNVGINPSID 89 (117)
T ss_dssp HHHHHHHHHHHHT--------------TCCCCCHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHH--------------hcCCCCHHHHHHHHhCCCCCCCc
Confidence 4455555666654 45689999999999999995543
No 65
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=23.93 E-value=80 Score=23.48 Aligned_cols=32 Identities=13% Similarity=0.018 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 017508 65 ICDLGKTSSFQANLACRTECNLFDIIRGIEDL 96 (370)
Q Consensus 65 L~~L~~~a~~yAe~agRT~p~~~DV~~AL~~m 96 (370)
|..+++.|...|-..++..++..|+..|+...
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 56677777777777788899999999999885
No 66
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=23.48 E-value=99 Score=26.73 Aligned_cols=47 Identities=19% Similarity=0.133 Sum_probs=40.7
Q ss_pred HHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHH
Q 017508 42 ESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDI 89 (370)
Q Consensus 42 ~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV 89 (370)
..+|.+.. .+=++.++|++.+-+.+|...+..-|...||..+-..|+
T Consensus 14 ~aa~Ldvd-K~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 14 QAAGLDVD-KNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp HHHCCCCC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred HHhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 34678855 567899999999999999999999999999998888873
No 67
>2nr5_A Hypothetical protein SO2669; PSI-2, MCSG, MAD, structural G protein structure initiative, midwest center for structural genomics; 1.90A {Shewanella oneidensis} SCOP: a.25.6.1
Probab=22.74 E-value=75 Score=23.06 Aligned_cols=45 Identities=24% Similarity=0.186 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcHHhhhhcCCC
Q 017508 193 DKIELARQRRKAEMALLSLQQRLVCNGETGTSASRPANDEEELLKTGSN 241 (370)
Q Consensus 193 iR~k~aeq~R~~EkAL~~L~~r~~~~g~~~~~~~~~~~~~~~~~~~~~n 241 (370)
-+++.+-|+-.+|+||-+|..--..-|+... ....+.+..+|+.|
T Consensus 7 kkeriaiqrsmaeealgklkairqlcgaeds----sdssdmqeveiwtn 51 (67)
T 2nr5_A 7 KKERIAIQRSMAEEALGKLKAIRQLCGAEDS----SDSSDMQEVEIWTN 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTCC--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccC----CcchhhHHHHHHHH
Confidence 3677889999999999999554444444331 22345666666544
No 68
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=21.03 E-value=1.1e+02 Score=27.08 Aligned_cols=57 Identities=11% Similarity=0.165 Sum_probs=41.2
Q ss_pred HHHHHHcCCCcccHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhc
Q 017508 38 AQICESVGFQGFKDSALDALSDIA----IRYICDLGKTSSFQANLACRTECNLFDIIRGIEDL 96 (370)
Q Consensus 38 aqIL~~~GF~s~~~sALe~Ltdl~----~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~m 96 (370)
...+...+.. ....++.|...+ .+-|..++..+..+|...++..++..||..|+.++
T Consensus 198 ~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 198 KIHTRKMNLA--EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHTTSCBC--TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHhcCCCC--CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 3445544433 233455555544 34688899999999999999999999999999885
No 69
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=20.61 E-value=1.9e+02 Score=23.77 Aligned_cols=56 Identities=11% Similarity=0.006 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 017508 36 AVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGI 93 (370)
Q Consensus 36 aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL 93 (370)
.+...+...|.. +++.+++.|.+....++..+-..+...+.. ++..++..||..++
T Consensus 193 ~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~-~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 193 QLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLTDQAIAS-GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHTTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHHTT-TTSSBCHHHHHHHS
T ss_pred HHHHHHHhcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-cCceecHHHHHHHh
Confidence 445566666765 567788888877655444444444333333 34478888887765
No 70
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.48 E-value=82 Score=28.76 Aligned_cols=59 Identities=12% Similarity=-0.046 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC----CCCHHHHHHHHHh
Q 017508 36 AVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRT----ECNLFDIIRGIED 95 (370)
Q Consensus 36 aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT----~p~~~DV~~AL~~ 95 (370)
.+..++...|+. +++.+++.|.+.....+..+...+...+..++|. .++..||..++..
T Consensus 200 ~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~~ 262 (353)
T 1sxj_D 200 RLRFISEQENVK-CDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGV 262 (353)
T ss_dssp HHHHHHHTTTCC-CCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHTC
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhCC
Confidence 445566667775 6788999998887655555544444444444443 7899999887764
No 71
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=20.12 E-value=4.8e+02 Score=23.47 Aligned_cols=51 Identities=20% Similarity=0.114 Sum_probs=39.8
Q ss_pred CcccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcc
Q 017508 47 QGFKDSALDALSDIAI------RYICDLGKTSSFQANLACRTECNLFDIIRGIEDLE 97 (370)
Q Consensus 47 ~s~~~sALe~Ltdl~~------~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mG 97 (370)
..++..+++.+.+... +++.+++..+...+...++..++..||..++..+.
T Consensus 217 ~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 217 GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 3567889998888876 45666777777777777888999999999988764
No 72
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=20.09 E-value=2.4e+02 Score=25.85 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=36.1
Q ss_pred cccHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcc
Q 017508 48 GFKDSALDALSDIAI------RYICDLGKTSSFQANLACRTECNLFDIIRGIEDLE 97 (370)
Q Consensus 48 s~~~sALe~Ltdl~~------~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mG 97 (370)
.+++.+++.+.+... +++.+++..+..+|. +...++..||..++..+.
T Consensus 218 ~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 218 TYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp SCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 467889999988876 345566666666665 667899999999998864
Done!