BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017509
(370 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|B Chain B, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|C Chain C, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|D Chain D, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|E Chain E, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|F Chain F, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
Length = 367
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 106/384 (27%), Positives = 169/384 (44%), Gaps = 68/384 (17%)
Query: 18 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 76
GL N GN F+N+ LQ L + +P L++ +I + D P G
Sbjct: 10 GLGNLGNTXFMNSALQCLSNTAPLTDYFLKDEYEAEINR----------------DNPLG 53
Query: 77 -----GSSKKKNISVLDIGRP--FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFI 129
+ + I + GR +P MF+ + F P SG +Q+D+QE L+F+
Sbjct: 54 MKGEIAEAYAELIKQMWSGRDAHVAPRMFKTQVGRFAP----QFSGY-QQQDSQELLAFL 108
Query: 130 MDQMHDELLKLQG----ESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSAL 185
+D +H++L +++ E NG A+V+ ++ WE +N S +
Sbjct: 109 LDGLHEDLNRVKKKPYLELKDANGRPDAVVA---KEAWENHRLRNDSVIV---------- 155
Query: 186 SDIFGGQLKS-VVKAQGNKASATVQPFLLLHLDIYSEAVHTIE----------------- 227
D F G KS +V + K S T PF L L + + +E
Sbjct: 156 -DTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALR 214
Query: 228 DALRLFSAPENLEGYRTSSTGNAGV-VTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLH 286
D + LF+ E L + N A K + +L KIL++HL RFSY KL
Sbjct: 215 DCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLD 274
Query: 287 KSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADAR-YFNDQWLHFD 345
V FP++ + + + SA Y+L+A H+G GHYTA A+ N +W +FD
Sbjct: 275 TVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFD 333
Query: 346 DASVTAIGTSKVLHDQAYVLFYKQ 369
D++V+ +++ AYVLFY++
Sbjct: 334 DSNVSLASEDQIVTKAAYVLFYQR 357
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
pdb|3V6E|A Chain A, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
Length = 367
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 111/362 (30%), Positives = 160/362 (44%), Gaps = 43/362 (11%)
Query: 18 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 76
GL N GN CF+N+ LQ L + LQ L RD+ A V +F
Sbjct: 30 GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGS----NAHTALVEEF----- 80
Query: 77 GSSKKKNISVLDIGRP---FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 133
K I + P SPS F+ ++ + P Q+DAQEFL F++D +
Sbjct: 81 ----AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGY-----NQQDAQEFLRFLLDGL 131
Query: 134 HDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 193
H+E+ ++ S N + +DE K + + S + D+F GQL
Sbjct: 132 HNEVNRVTLRPKS----NPENLDHLPDDE------KGRQMWRKYLEREDSRIGDLFVGQL 181
Query: 194 KSVVKAQGNKASATV-QPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEG-YRTSST 247
KS + +TV PF L L I Y E T+ D +RLF+ + L+G + +
Sbjct: 182 KSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDVLDGDEKPTCC 239
Query: 248 GNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSA 307
G K IQ KIL+LHL RFS ++KL V FPL+ + R+ + +
Sbjct: 240 RCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLRE-FASENT 298
Query: 308 EGRKYELVATVTHHGRDPSKGHYTADARY-FNDQWLHFDDASVTAIGTSKVLHDQAYVLF 366
Y L A H G GHYTA R +W F+D+SVT + +S+V AY+LF
Sbjct: 299 NHAVYNLYAVSNHSG-TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLF 357
Query: 367 YK 368
Y+
Sbjct: 358 YE 359
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin
Length = 359
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 111/362 (30%), Positives = 160/362 (44%), Gaps = 43/362 (11%)
Query: 18 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 76
GL N GN CF+N+ LQ L + LQ L RD+ A V +F
Sbjct: 11 GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGS----NAHTALVEEF----- 61
Query: 77 GSSKKKNISVLDIGRP---FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 133
K I + P SPS F+ ++ + P Q+DAQEFL F++D +
Sbjct: 62 ----AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGY-----NQQDAQEFLRFLLDGL 112
Query: 134 HDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 193
H+E+ ++ S N + +DE K + + S + D+F GQL
Sbjct: 113 HNEVNRVTLRPKS----NPENLDHLPDDE------KGRQMWRKYLEREDSRIGDLFVGQL 162
Query: 194 KSVVKAQGNKASATV-QPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEG-YRTSST 247
KS + +TV PF L L I Y E T+ D +RLF+ + L+G + +
Sbjct: 163 KSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDVLDGDEKPTCC 220
Query: 248 GNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSA 307
G K IQ KIL+LHL RFS ++KL V FPL+ + R+ + +
Sbjct: 221 RCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLRE-FASENT 279
Query: 308 EGRKYELVATVTHHGRDPSKGHYTADARY-FNDQWLHFDDASVTAIGTSKVLHDQAYVLF 366
Y L A H G GHYTA R +W F+D+SVT + +S+V AY+LF
Sbjct: 280 NHAVYNLYAVSNHSG-TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLF 338
Query: 367 YK 368
Y+
Sbjct: 339 YE 340
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
pdb|3MTN|C Chain C, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
Length = 373
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 123/383 (32%), Positives = 170/383 (44%), Gaps = 57/383 (14%)
Query: 14 LLPRG------LINSGNLCFLNATLQALMSCSPF--VQLLQELRTRDIPKAGYPT-LT-A 63
L+PRG L N GN CFLNA LQ L S P L ++ R +++P G LT A
Sbjct: 14 LVPRGSSGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFR-QEVPGGGRAQELTEA 72
Query: 64 FVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQ 123
F + P D +P+ F AV + + P S SG Q+DAQ
Sbjct: 73 FADVIGALWHP-------------DSCEAVNPTRFRAVFQKYVP----SFSGY-SQQDAQ 114
Query: 124 EFLSFIMDQMHDELLKLQGESTSINGANTALVS-------LAEEDEWETVGPKN---KSA 173
EFL +M+++H E+ + +G AN + S L EE E N K
Sbjct: 115 EFLKLLMERLHLEINR-RGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRY 173
Query: 174 VTRTQSFLPSALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----YSEAVHTIED 228
+ R S + D+F GQLKS +K Q S T + F L L I ++ ++ D
Sbjct: 174 LERED----SKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRD 229
Query: 229 ALRLFSAPENLEGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHK 287
LF+ E LE T + K + +Q +IL+LHL RFS S+GS K
Sbjct: 230 CFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFS-ASRGSIKKSS 288
Query: 288 -SVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFD 345
V FPLQ L LG + A Y+L A H G GHYTA R W ++
Sbjct: 289 VGVDFPLQRLSLGD--FASDKAGSPVYQLYALCNHSG-SVHYGHYTALCR-CQTGWHVYN 344
Query: 346 DASVTAIGTSKVLHDQAYVLFYK 368
D+ V+ + ++V + YVLFY+
Sbjct: 345 DSRVSPVSENQVASSEGYVLFYQ 367
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex
Length = 374
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 110/362 (30%), Positives = 158/362 (43%), Gaps = 43/362 (11%)
Query: 18 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 76
GL N GN CF+N+ LQ L + LQ L RD+ A V +F
Sbjct: 37 GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGS----NAHTALVEEF----- 87
Query: 77 GSSKKKNISVLDIGRP---FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 133
K I + P SPS F+ ++ + P Q+DAQEFL F++D +
Sbjct: 88 ----AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGY-----NQQDAQEFLRFLLDGL 138
Query: 134 HDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 193
H+E+ ++ S N + +DE K + + S + D+F GQL
Sbjct: 139 HNEVNRVTLRPKS----NPENLDHLPDDE------KGRQMWRKYLEREDSRIGDLFVGQL 188
Query: 194 KSVVKAQGNKASATV-QPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEGYRTSSTG 248
KS + +TV PF L L I Y E T+ D +RLF+ + L+G +
Sbjct: 189 KSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDVLDGDAAPTCC 246
Query: 249 NAGVVTAK-KSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSA 307
K IQ KIL+LHL RFS ++KL V FPL+ + R+ + +
Sbjct: 247 RCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLRE-FASENT 305
Query: 308 EGRKYELVATVTHHGRDPSKGHYTADARY-FNDQWLHFDDASVTAIGTSKVLHDQAYVLF 366
Y L A H G GHYTA R +W F+D+SVT + +S+V AY+LF
Sbjct: 306 NHAVYNLYAVSNHSG-TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLF 364
Query: 367 YK 368
Y+
Sbjct: 365 YE 366
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
pdb|2Y5B|E Chain E, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
Length = 370
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 166/373 (44%), Gaps = 51/373 (13%)
Query: 18 GLINSGNLCFLNATLQALMSCSPF--VQLLQELRTRDIPKAGYPT-LT-AFVGFVSDFDT 73
GL N GN CFLNA LQ L S P L ++ R +++P G LT AF +
Sbjct: 18 GLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFR-QEVPGGGRAQELTEAFADVIGALWH 76
Query: 74 PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 133
P D +P+ F AV + + P S SG Q+DAQEFL +M+++
Sbjct: 77 P-------------DSCEAVNPTRFRAVFQKYVP----SFSGYS-QQDAQEFLKLLMERL 118
Query: 134 HDELLKLQGESTSINGANTALVS-------LAEEDEWETVGPKN---KSAVTRTQSFLPS 183
H E+ + +G AN + S L EE E N K + R S
Sbjct: 119 HLEINR-RGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLERED----S 173
Query: 184 ALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPEN 238
+ D+F GQLKS +K Q S T + F L L I ++ ++ D LF+ E
Sbjct: 174 KIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEE 233
Query: 239 LEGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHK-SVRFPLQ-L 295
LE T + K + +Q +IL+LHL RFS S+GS K V FPLQ L
Sbjct: 234 LESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFS-ASRGSIKKSSVGVDFPLQRL 292
Query: 296 VLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTS 355
LG + A Y+L A H G GHYTA R W ++D+ V+ + +
Sbjct: 293 SLGD--FASDKAGSPVYQLYALCNHSG-SVHYGHYTALCR-CQTGWHVYNDSRVSPVSEN 348
Query: 356 KVLHDQAYVLFYK 368
+V + YVLFY+
Sbjct: 349 QVASSEGYVLFYQ 361
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|C Chain C, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|E Chain E, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|G Chain G, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
Length = 355
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 166/373 (44%), Gaps = 51/373 (13%)
Query: 18 GLINSGNLCFLNATLQALMSCSPF--VQLLQELRTRDIPKAGYPT-LT-AFVGFVSDFDT 73
GL N GN CFLNA LQ L S P L ++ R +++P G LT AF +
Sbjct: 5 GLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFR-QEVPGGGRAQELTEAFADVIGALWH 63
Query: 74 PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 133
P D +P+ F AV + + P S SG Q+DAQEFL +M+++
Sbjct: 64 P-------------DSCEAVNPTRFRAVFQKYVP----SFSGYS-QQDAQEFLKLLMERL 105
Query: 134 HDELLKLQGESTSINGANTALVS-------LAEEDEWETVGPKN---KSAVTRTQSFLPS 183
H E+ + +G AN + S L EE E N K + R S
Sbjct: 106 HLEINR-RGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLERED----S 160
Query: 184 ALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPEN 238
+ D+F GQLKS +K Q S T + F L L I ++ ++ D LF+ E
Sbjct: 161 KIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEE 220
Query: 239 LEGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHK-SVRFPLQ-L 295
LE T + K + +Q +IL+LHL RFS S+GS K V FPLQ L
Sbjct: 221 LESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFS-ASRGSIKKSSVGVDFPLQRL 279
Query: 296 VLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTS 355
LG + A Y+L A H G GHYTA R W ++D+ V+ + +
Sbjct: 280 SLGD--FASDKAGSPVYQLYALCNHSG-SVHYGHYTALCR-CQTGWHVYNDSRVSPVSEN 335
Query: 356 KVLHDQAYVLFYK 368
+V + YVLFY+
Sbjct: 336 QVASSEGYVLFYQ 348
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8
Specific Inhibitor
Length = 396
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 105/357 (29%), Positives = 156/357 (43%), Gaps = 35/357 (9%)
Query: 18 GLINSGNLCFLNATLQALMSCSPFVQLL-QELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 76
GL N GN C++N+ LQ L + + DI ++ +G + G
Sbjct: 64 GLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSN------LLGHKGEVAEEFG 117
Query: 77 GSSKKKNISVLDIG--RPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMH 134
K L G R SP F+ + + + +G Q+D+QE L F+MD +H
Sbjct: 118 IIMK-----ALWTGQYRYISPKDFKITIGK----INDQFAGYS-QQDSQELLLFLMDGLH 167
Query: 135 DELLKLQGESTSINGANTALVSL-AEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 193
++L K N L A E W+ N+S + +F GQ
Sbjct: 168 EDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVA-----------LFQGQF 216
Query: 194 KSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAG 251
KS V+ +K S T + F+ L L + S + T++D LRLFS E L + R +
Sbjct: 217 KSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRA 276
Query: 252 VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRK 311
+ K ++I L +L++HL RFSY + KL SV FPL+ + ++ P +K
Sbjct: 277 RRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK 336
Query: 312 YELVATVTHHGRDPSKGHYTADARYFNDQ-WLHFDDASVTAIGTSKVLHDQAYVLFY 367
Y L + H+G GHYTA + Q W FDD V+ I S V AY+LFY
Sbjct: 337 YNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFY 392
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With
Ubiquitin
Length = 348
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 110/362 (30%), Positives = 159/362 (43%), Gaps = 43/362 (11%)
Query: 18 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 76
GL N GN F+N+ LQ L + LQ L RD+ A V +F
Sbjct: 11 GLRNLGNTXFMNSILQCLSNTRELRDYCLQRLYMRDLHHGS----NAHTALVEEF----- 61
Query: 77 GSSKKKNISVLDIGRP---FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 133
K I + P SPS F+ ++ + P Q+DAQEFL F++D +
Sbjct: 62 ----AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGY-----NQQDAQEFLRFLLDGL 112
Query: 134 HDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 193
H+E+ ++ S N + +DE K + + S + D+F GQL
Sbjct: 113 HNEVNRVTLRPKS----NPENLDHLPDDE------KGRQMWRKYLEREDSRIGDLFVGQL 162
Query: 194 KSVVKAQGNKASATV-QPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEG-YRTSST 247
KS + +TV PF L L I Y E T+ D +RLF+ + L+G + +
Sbjct: 163 KSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDVLDGDEKPTCC 220
Query: 248 GNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSA 307
G K IQ KIL+LHL RFS ++KL V FPL+ + R+ + +
Sbjct: 221 RCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLRE-FASENT 279
Query: 308 EGRKYELVATVTHHGRDPSKGHYTADARY-FNDQWLHFDDASVTAIGTSKVLHDQAYVLF 366
Y L A H G GHYTA R +W F+D+SVT + +S+V AY+LF
Sbjct: 280 NHAVYNLYAVSNHSG-TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLF 338
Query: 367 YK 368
Y+
Sbjct: 339 YE 340
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin
Carboxyl-terminal Hydrolase 8
Length = 396
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 104/357 (29%), Positives = 153/357 (42%), Gaps = 35/357 (9%)
Query: 18 GLINSGNLCFLNATLQALMSCSPFVQLL-QELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 76
GL N GN C+ N+ LQ L + + DI ++ +G + G
Sbjct: 64 GLRNLGNTCYXNSILQCLCNAPHLADYFNRNCYQDDINRSN------LLGHKGEVAEEFG 117
Query: 77 GSSKKKNISVLDIG--RPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMH 134
K L G R SP F+ + + + +G Q+D+QE L F+ D +H
Sbjct: 118 IIXK-----ALWTGQYRYISPKDFKITIGK----INDQFAGYS-QQDSQELLLFLXDGLH 167
Query: 135 DELLKLQGESTSINGANTALVSL-AEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 193
++L K N L A E W+ N+S + +F GQ
Sbjct: 168 EDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVA-----------LFQGQF 216
Query: 194 KSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAG 251
KS V+ +K S T + F L L + S + T++D LRLFS E L + R +
Sbjct: 217 KSTVQCLTCHKKSRTFEAFXYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRA 276
Query: 252 VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRK 311
+ K ++I L +L++HL RFSY + KL SV FPL+ + ++ P +K
Sbjct: 277 RRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK 336
Query: 312 YELVATVTHHGRDPSKGHYTADARYFNDQ-WLHFDDASVTAIGTSKVLHDQAYVLFY 367
Y L + H+G GHYTA + Q W FDD V+ I S V AY+LFY
Sbjct: 337 YNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFY 392
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FIP|E Chain E, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FK5|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11SUS1SGF73 DUB MODULE
Length = 476
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 152/372 (40%), Gaps = 66/372 (17%)
Query: 18 GLINSGNLCFLNATLQALMSCSPFVQLL------QELRTRDIPKAGYPTLTAFV----GF 67
GLIN GN CF+++ LQ L+ F++ + R K L V G
Sbjct: 143 GLINMGNTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGA 202
Query: 68 VSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLS 127
++ S +S + + L + +++G Q+DA EF
Sbjct: 203 LNTKQASSSSTSTNRQTGFI-------------YLLTCAWKINQNLAGYS-QQDAHEFWQ 248
Query: 128 FIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSD 187
FI++Q+H +S ++ N VS A + E + +
Sbjct: 249 FIINQIH--------QSYVLDLPNAKEVSRANNKQCECI------------------VHT 282
Query: 188 IFGGQLKSVVKAQG--NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTS 245
+F G L+S + G N + T+ PFL L LDI + + + L F E L+ +
Sbjct: 283 VFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKK--KLYECLDSFHKKEQLKDFNYH 340
Query: 246 STGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGST-KLHKSVRFPLQLVLGRDLLVT 304
A K + I L +L+L L RF + GS KL + FP L + ++ T
Sbjct: 341 CGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNM-KNYCST 399
Query: 305 PSAEGRK---------YELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTS 355
+ YEL+ V+H G ++GHY A + QW F+D+ V++I
Sbjct: 400 KEKDKHSENGKVPDIIYELIGIVSHKGT-VNEGHYIAFCKISGGQWFKFNDSMVSSISQE 458
Query: 356 KVLHDQAYVLFY 367
+VL +QAY+LFY
Sbjct: 459 EVLKEQAYLLFY 470
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module
Length = 471
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 94/372 (25%), Positives = 152/372 (40%), Gaps = 66/372 (17%)
Query: 18 GLINSGNLCFLNATLQALMSCSPFVQLL------QELRTRDIPKAGYPTLTAFV----GF 67
GLIN G+ CF+++ LQ L+ F++ + R K L V G
Sbjct: 138 GLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGA 197
Query: 68 VSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLS 127
++ S +S + + L + +++G Q+DA EF
Sbjct: 198 LNTKQASSSSTSTNRQTGFI-------------YLLTCAWKINQNLAGYS-QQDAHEFWQ 243
Query: 128 FIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSD 187
FI++Q+H +S ++ N VS A + E + +
Sbjct: 244 FIINQIH--------QSYVLDLPNAKEVSRANNKQCECI------------------VHT 277
Query: 188 IFGGQLKSVVKAQG--NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTS 245
+F G L+S + G N + T+ PFL L LDI + + + L F E L+ +
Sbjct: 278 VFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKK--KLYECLDSFHKKEQLKDFNYH 335
Query: 246 STGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGST-KLHKSVRFPLQLVLGRDLLVT 304
A K + I L +L+L L RF + GS KL + FP L + ++ T
Sbjct: 336 CGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNM-KNYCST 394
Query: 305 PSAEGRK---------YELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTS 355
+ YEL+ V+H G ++GHY A + QW F+D+ V++I
Sbjct: 395 KEKDKHSENGKVPDIIYELIGIVSHKGT-VNEGHYIAFCKISGGQWFKFNDSMVSSISQE 453
Query: 356 KVLHDQAYVLFY 367
+VL +QAY+LFY
Sbjct: 454 EVLKEQAYLLFY 465
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
pdb|3MHS|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE BOUND
Ubiquitin Aldehyde
pdb|4FJC|A Chain A, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
pdb|4FJC|E Chain E, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
Length = 476
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 94/372 (25%), Positives = 152/372 (40%), Gaps = 66/372 (17%)
Query: 18 GLINSGNLCFLNATLQALMSCSPFVQLL------QELRTRDIPKAGYPTLTAFV----GF 67
GLIN G+ CF+++ LQ L+ F++ + R K L V G
Sbjct: 143 GLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGA 202
Query: 68 VSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLS 127
++ S +S + + L + +++G Q+DA EF
Sbjct: 203 LNTKQASSSSTSTNRQTGFI-------------YLLTCAWKINQNLAGYS-QQDAHEFWQ 248
Query: 128 FIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSD 187
FI++Q+H +S ++ N VS A + E + +
Sbjct: 249 FIINQIH--------QSYVLDLPNAKEVSRANNKQCECI------------------VHT 282
Query: 188 IFGGQLKSVVKAQG--NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTS 245
+F G L+S + G N + T+ PFL L LDI + + + L F E L+ +
Sbjct: 283 VFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKDKK--KLYECLDSFHKKEQLKDFNYH 340
Query: 246 STGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGST-KLHKSVRFPLQLVLGRDLLVT 304
A K + I L +L+L L RF + GS KL + FP L + ++ T
Sbjct: 341 CGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNM-KNYCST 399
Query: 305 PSAEGRK---------YELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTS 355
+ YEL+ V+H G ++GHY A + QW F+D+ V++I
Sbjct: 400 KEKDKHSENGKVPDIIYELIGIVSHKGT-VNEGHYIAFCKISGGQWFKFNDSMVSSISQE 458
Query: 356 KVLHDQAYVLFY 367
+VL +QAY+LFY
Sbjct: 459 EVLKEQAYLLFY 470
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp
pdb|2F1Z|B Chain B, Crystal Structure Of Hausp
Length = 522
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 85/197 (43%), Gaps = 17/197 (8%)
Query: 169 KNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIE 227
+NK T + +P +F G++ S ++ + + S + + + L I + I
Sbjct: 270 ENKMKGTCVEGTIPK----LFRGKMVSYIQCKEVDYRSDRREDYYDIQLSI--KGKKNIF 323
Query: 228 DALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKL 285
++ + A E L+G G G+ A+K VK TL +L L LMRF Y Q + K+
Sbjct: 324 ESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKI 383
Query: 286 HKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFN----DQW 341
+ FP QL L L T + Y L A + H G D GHY Y N +W
Sbjct: 384 NDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSG-DNHGGHYVV---YLNPKGDGKW 439
Query: 342 LHFDDASVTAIGTSKVL 358
FDD V+ + +
Sbjct: 440 CKFDDDVVSRCTKEEAI 456
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|B Chain B, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
pdb|1NBF|E Chain E, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme
In Isolation And In Complex With Ubiquitin Aldehyde
Length = 353
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 169 KNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIE 227
+NK T + +P +F G++ S ++ + + S + + + L I + I
Sbjct: 101 ENKMKGTCVEGTIPK----LFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKK--NIF 154
Query: 228 DALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKL 285
++ + A E L+G G G+ A+K VK TL +L L LMRF Y Q + K+
Sbjct: 155 ESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKI 214
Query: 286 HKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFN----DQW 341
+ FP QL L L T + Y L A + H G D GHY Y N +W
Sbjct: 215 NDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSG-DNHGGHYVV---YLNPKGDGKW 270
Query: 342 LHFDDASVT 350
FDD V+
Sbjct: 271 CKFDDDVVS 279
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp)
pdb|1NB8|B Chain B, Structure Of The Catalytic Domain Of Usp7 (Hausp)
Length = 353
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 57/132 (43%), Gaps = 10/132 (7%)
Query: 233 FSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVR 290
+ A E L+G G G+ A+K VK TL +L L L RF Y Q + K++
Sbjct: 160 YVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLXRFXYDPQTDQNIKINDRFE 219
Query: 291 FPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFN----DQWLHFDD 346
FP QL L L T + Y L A + H G D GHY Y N +W FDD
Sbjct: 220 FPEQLPLDEFLQKTDPKDPANYILHAVLVHSG-DNHGGHYVV---YLNPKGDGKWCKFDD 275
Query: 347 ASVTAIGTSKVL 358
V+ + +
Sbjct: 276 DVVSRCTKEEAI 287
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|B Chain B, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|C Chain C, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYO|A Chain A, Structure Of Usp14 Bound To Ubquitin Aldehyde
Length = 404
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 97/419 (23%), Positives = 149/419 (35%), Gaps = 107/419 (25%)
Query: 15 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQE----LRTR-DIPKAGYPTLTAFVGFVS 69
LP GL N GN C++NAT+Q + S L+ LR ++ A Y T
Sbjct: 13 LPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYIT----AALRD 68
Query: 70 DFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFI 129
FD+ SS I +L P E G+ Q+DA E +
Sbjct: 69 LFDSMDKTSSSIPPIILLQFLHMAFPQFAE-----------KGEQGQYLQQDANECWIQM 117
Query: 130 MDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIF 189
M + +L ++ + S+ E D + SA T S S + F
Sbjct: 118 MRVLQQKLEAIEDD------------SVKETD--------SSSASAATPSKKKSLIDQFF 157
Query: 190 GGQLKSVVKA-QGNKASATVQPFLLLHLDIY-SEAVHTIEDALRLFSAPENLEGYRTSST 247
G + ++ +K + + T L L + ++ V + L+L E + +
Sbjct: 158 GVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKL-RLQEEITKQSPTLQ 216
Query: 248 GNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGST--KLHKSVRFPLQLVLGRDLLVTP 305
NA + + K I L L + ++RF Y + S K+ K V+FPL L + L TP
Sbjct: 217 RNALYIKSSK---ISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYE--LCTP 271
Query: 306 SAEGR---------------------------------KYE-----------------LV 315
+ + KYE L
Sbjct: 272 ELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQ 331
Query: 316 ATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLH-------DQAYVLFY 367
A +TH GR S GHY + + D+W+ FDD V+ + +L AYVL Y
Sbjct: 332 AVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLY 390
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase
6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A
Resolution
Length = 415
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 312 YELVATVTHHGRDPSKGHYTADARYFNDQ--WLHFDDASVTAIGTSKV-------LHDQA 362
Y L+ +TH G + GHY A R D+ W F+D V+ + K+ D A
Sbjct: 346 YNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSA 405
Query: 363 YVLFYK 368
+L YK
Sbjct: 406 LILXYK 411
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 15 LPRGLINSGNLCFLNATLQAL 35
LP G N GN C+LNATLQAL
Sbjct: 23 LPVGFKNXGNTCYLNATLQAL 43
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex
pdb|3IHP|B Chain B, Covalent Ubiquitin-Usp5 Complex
Length = 854
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 311 KYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 370
KY+L A ++H G GHY + +W+ ++D V A + K D Y+ FY++V
Sbjct: 796 KYQLFAFISHMGTSTMCGHYVCHIKK-EGRWVIYNDQKVCA--SEKPPKDLGYIYFYQRV 852
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 18 GLINSGNLCFLNATLQALMSCSPF----VQLLQEL--RTRDIPKAGYPTLTAFVG---FV 68
G+ N GN C+LN+ +Q L S F V L+++ P + T A +G
Sbjct: 346 GIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLS 405
Query: 69 SDFDTPSGGSSKKKNI-SVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLS 127
++ P S + + ++ +P MF+A++ P+ + RQ+DAQEF
Sbjct: 406 GEYSKPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTN-----RQQDAQEFFL 460
Query: 128 FIMDQMH 134
+++ +
Sbjct: 461 HLINMVE 467
>pdb|2ENW|A Chain A, Mutant Y92h Structure Of Tthb049 From Thermus Thermophilus
Hb8
pdb|2ENW|B Chain B, Mutant Y92h Structure Of Tthb049 From Thermus Thermophilus
Hb8
Length = 177
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 163 WETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATV 208
WET+ P++K A+ R Q F P + Q + +G KA A +
Sbjct: 85 WETLDPRHKEALLRFQGFHPPGGESLSAFQERVFRFLEGLKAPAVL 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,525,893
Number of Sequences: 62578
Number of extensions: 410141
Number of successful extensions: 1138
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1062
Number of HSP's gapped (non-prelim): 39
length of query: 370
length of database: 14,973,337
effective HSP length: 100
effective length of query: 270
effective length of database: 8,715,537
effective search space: 2353194990
effective search space used: 2353194990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)