Query 017509
Match_columns 370
No_of_seqs 141 out of 1178
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 09:12:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865 Ubiquitin carboxyl-ter 100.0 3.3E-65 7.2E-70 457.2 22.5 300 13-369 105-409 (545)
2 cd02660 Peptidase_C19D A subfa 100.0 3.5E-60 7.7E-65 430.7 28.6 300 17-368 1-328 (328)
3 cd02663 Peptidase_C19G A subfa 100.0 3.2E-60 7E-65 424.0 25.5 286 18-368 1-300 (300)
4 cd02664 Peptidase_C19H A subfa 100.0 3.4E-59 7.3E-64 421.5 25.6 274 18-368 1-327 (327)
5 cd02671 Peptidase_C19O A subfa 100.0 9.6E-59 2.1E-63 415.8 28.2 273 16-368 24-332 (332)
6 cd02657 Peptidase_C19A A subfa 100.0 4.8E-59 1E-63 418.8 26.4 289 18-368 1-305 (305)
7 cd02658 Peptidase_C19B A subfa 100.0 1.5E-58 3.2E-63 416.6 29.2 291 18-368 1-311 (311)
8 cd02668 Peptidase_C19L A subfa 100.0 1.3E-58 2.9E-63 418.0 28.0 286 18-368 1-324 (324)
9 cd02661 Peptidase_C19E A subfa 100.0 3E-58 6.4E-63 414.4 27.8 298 16-367 1-303 (304)
10 cd02667 Peptidase_C19K A subfa 100.0 2.6E-58 5.6E-63 407.2 24.8 246 18-368 1-279 (279)
11 cd02669 Peptidase_C19M A subfa 100.0 3.7E-56 8E-61 414.9 27.1 289 16-368 119-440 (440)
12 cd02659 peptidase_C19C A subfa 100.0 1.4E-55 3E-60 401.5 27.7 292 16-370 2-332 (334)
13 COG5560 UBP12 Ubiquitin C-term 100.0 4.1E-57 8.9E-62 406.6 14.7 322 14-369 263-821 (823)
14 cd02662 Peptidase_C19F A subfa 100.0 2.5E-54 5.4E-59 372.8 22.5 212 18-368 1-240 (240)
15 COG5533 UBP5 Ubiquitin C-termi 100.0 1.1E-53 2.5E-58 354.1 19.8 325 12-370 67-414 (415)
16 KOG0944 Ubiquitin-specific pro 100.0 4.8E-51 1E-55 370.2 19.5 312 3-370 291-762 (763)
17 cd02674 Peptidase_C19R A subfa 100.0 1.9E-49 4E-54 342.5 20.4 200 118-368 21-230 (230)
18 KOG1868 Ubiquitin C-terminal h 100.0 2.6E-48 5.6E-53 364.7 17.0 327 11-370 296-646 (653)
19 cd02665 Peptidase_C19I A subfa 100.0 1.1E-47 2.5E-52 322.0 17.7 199 118-368 21-228 (228)
20 PF00443 UCH: Ubiquitin carbox 100.0 2.6E-47 5.7E-52 337.0 20.3 253 16-367 1-269 (269)
21 cd02666 Peptidase_C19J A subfa 100.0 9.3E-48 2E-52 343.9 16.1 276 16-368 1-343 (343)
22 cd02673 Peptidase_C19Q A subfa 100.0 1.5E-46 3.3E-51 322.0 20.1 212 114-368 28-245 (245)
23 cd02257 Peptidase_C19 Peptidas 100.0 3.2E-44 6.9E-49 314.2 22.7 220 118-368 21-255 (255)
24 KOG1866 Ubiquitin carboxyl-ter 100.0 1.8E-46 4E-51 342.9 5.5 298 9-370 88-434 (944)
25 COG5077 Ubiquitin carboxyl-ter 100.0 4.5E-46 9.8E-51 341.1 7.2 288 17-369 194-510 (1089)
26 COG5207 UBP14 Isopeptidase T [ 100.0 2.5E-44 5.4E-49 316.6 17.0 306 7-370 294-749 (749)
27 KOG1867 Ubiquitin-specific pro 100.0 1.1E-42 2.4E-47 321.4 16.4 305 14-369 159-483 (492)
28 KOG1873 Ubiquitin-specific pro 100.0 2.4E-42 5.1E-47 316.8 10.0 343 15-370 204-877 (877)
29 cd02672 Peptidase_C19P A subfa 100.0 1.2E-38 2.5E-43 277.0 20.6 235 16-368 15-268 (268)
30 KOG1870 Ubiquitin C-terminal h 100.0 6.6E-40 1.4E-44 324.2 13.9 318 17-370 247-841 (842)
31 KOG1871 Ubiquitin-specific pro 100.0 7.8E-38 1.7E-42 268.4 16.7 353 12-370 24-419 (420)
32 KOG1863 Ubiquitin carboxyl-ter 100.0 1.8E-38 4E-43 321.4 12.8 299 9-370 163-485 (1093)
33 PF13423 UCH_1: Ubiquitin carb 100.0 1.1E-36 2.3E-41 271.5 22.4 284 17-349 1-295 (295)
34 cd02670 Peptidase_C19N A subfa 100.0 5.2E-37 1.1E-41 259.8 15.9 135 212-368 65-241 (241)
35 KOG4598 Putative ubiquitin-spe 100.0 3.2E-38 6.9E-43 287.1 3.6 265 17-370 88-441 (1203)
36 KOG1864 Ubiquitin-specific pro 100.0 1.5E-33 3.2E-38 264.8 17.8 326 17-368 233-570 (587)
37 KOG1872 Ubiquitin-specific pro 100.0 3.8E-32 8.1E-37 239.7 6.0 301 12-368 101-467 (473)
38 KOG2026 Spindle pole body prot 99.9 7.6E-27 1.7E-31 200.1 12.8 284 17-369 135-440 (442)
39 KOG1275 PAB-dependent poly(A) 99.8 2.3E-20 4.9E-25 175.9 14.2 316 17-367 500-860 (1118)
40 PF15499 Peptidase_C98: Ubiqui 98.8 2.6E-08 5.6E-13 82.6 8.7 129 185-348 123-252 (275)
41 KOG1864 Ubiquitin-specific pro 97.4 6.2E-05 1.3E-09 72.3 2.2 31 19-49 34-64 (587)
42 PF08715 Viral_protease: Papai 96.8 0.038 8.3E-07 49.2 13.2 35 94-134 144-178 (320)
43 KOG3556 Familial cylindromatos 96.8 0.00053 1.1E-08 62.8 1.4 23 17-39 369-391 (724)
44 KOG1887 Ubiquitin carboxyl-ter 96.6 0.00036 7.9E-09 67.6 -0.7 225 100-357 532-771 (806)
45 PF05408 Peptidase_C28: Foot-a 95.7 0.0064 1.4E-07 48.3 1.9 28 326-354 137-164 (193)
46 KOG1871 Ubiquitin-specific pro 95.2 0.035 7.6E-07 49.7 5.1 219 6-241 168-404 (420)
47 PF05408 Peptidase_C28: Foot-a 90.0 0.83 1.8E-05 36.7 5.3 21 17-37 34-54 (193)
48 PF03292 Pox_P4B: Poxvirus P4B 89.9 0.53 1.1E-05 44.9 4.8 77 266-354 479-575 (666)
49 PF02099 Josephin: Josephin; 73.3 5.4 0.00012 31.8 3.9 33 314-352 99-131 (157)
50 PF10748 DUF2531: Protein of u 69.6 7.9 0.00017 29.6 3.8 35 309-349 33-67 (132)
51 PF01473 CW_binding_1: Putativ 63.1 8.8 0.00019 18.2 2.0 15 333-348 3-17 (19)
52 COG3478 Predicted nucleic-acid 62.1 8.2 0.00018 25.1 2.3 37 242-278 5-41 (68)
53 PF09855 DUF2082: Nucleic-acid 51.9 13 0.00029 24.5 2.1 10 242-251 1-10 (64)
54 COG4647 AcxC Acetone carboxyla 47.1 24 0.00052 26.6 3.0 51 196-249 70-128 (165)
55 PF12252 SidE: Dot/Icm substra 37.8 36 0.00078 35.4 3.5 27 321-347 56-82 (1439)
56 PF14205 Cys_rich_KTR: Cystein 37.7 24 0.00051 22.3 1.5 25 243-267 6-30 (55)
57 cd01269 PLX Pollux (PLX) Phosp 36.7 51 0.0011 25.0 3.3 27 310-336 81-107 (129)
58 KOG1867 Ubiquitin-specific pro 34.8 9.1 0.0002 36.8 -1.0 34 12-45 73-106 (492)
59 cd02420 Peptidase_C39D A sub-f 34.5 84 0.0018 23.4 4.6 40 327-366 83-124 (125)
60 KOG2935 Ataxin 3/Josephin [Gen 34.0 4.9 0.00011 34.0 -2.6 27 315-347 104-130 (315)
61 PF09871 DUF2098: Uncharacteri 33.8 84 0.0018 22.4 3.9 33 316-349 7-39 (91)
62 PF10264 Stork_head: Winged he 33.4 1.5E+02 0.0032 20.6 4.9 38 57-109 9-46 (80)
63 cd02418 Peptidase_C39B A sub-f 27.2 1.9E+02 0.0042 21.6 5.6 48 318-366 80-130 (136)
64 cd02419 Peptidase_C39C A sub-f 26.8 1.7E+02 0.0037 21.7 5.1 42 326-367 82-125 (127)
65 PF14509 GH97_C: Glycosyl-hydr 26.8 39 0.00084 24.8 1.4 21 327-347 13-37 (103)
66 smart00333 TUDOR Tudor domain. 25.6 1.7E+02 0.0037 18.1 4.7 17 327-344 5-21 (57)
67 PRK09750 hypothetical protein; 25.3 1.4E+02 0.003 19.2 3.3 30 310-352 2-31 (64)
68 smart00460 TGc Transglutaminas 24.6 1.1E+02 0.0024 19.7 3.3 21 325-346 46-66 (68)
69 cd02425 Peptidase_C39F A sub-f 24.3 1.3E+02 0.0028 22.2 4.0 39 328-366 85-125 (126)
70 PF03412 Peptidase_C39: Peptid 23.2 1.4E+02 0.003 22.4 4.0 43 326-368 83-127 (131)
71 PF01841 Transglut_core: Trans 22.1 92 0.002 22.6 2.7 21 325-345 92-112 (113)
72 PF09149 DUF1935: Domain of un 22.1 1.3E+02 0.0029 22.0 3.4 27 328-354 21-47 (104)
73 PF14690 zf-ISL3: zinc-finger 22.0 1.7E+02 0.0037 17.3 3.5 35 242-276 3-43 (47)
74 COG0093 RplN Ribosomal protein 21.6 1E+02 0.0022 23.1 2.7 34 313-355 57-90 (122)
75 KOG2906 RNA polymerase III sub 21.2 2.4E+02 0.0052 20.4 4.3 57 190-250 15-74 (105)
76 PF13529 Peptidase_C39_2: Pept 20.9 1.1E+02 0.0023 23.1 3.0 23 325-347 121-143 (144)
No 1
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-65 Score=457.22 Aligned_cols=300 Identities=34% Similarity=0.535 Sum_probs=263.8
Q ss_pred CCCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccC-CCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCC
Q 017509 13 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD-IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGR 91 (370)
Q Consensus 13 ~~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 91 (370)
...|+||.|+|||||+||+||+|.++|++.++|++..... +...+.|++|+|..++..-. ...+.
T Consensus 105 ~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~--------------~~~g~ 170 (545)
T KOG1865|consen 105 AAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRAL--------------HNPGH 170 (545)
T ss_pred ccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHh--------------cCCCC
Confidence 4456999999999999999999999999999998765443 44589999999998876532 24456
Q ss_pred CCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCC
Q 017509 92 PFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNK 171 (370)
Q Consensus 92 ~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (370)
+|+|..|+..|+.+...| +.|.|+||||||.+++|.++..+..... ...
T Consensus 171 pisP~~i~s~L~~I~~~f-----~~grQEDAHEFLr~~vd~mqk~cL~g~~-~~~------------------------- 219 (545)
T KOG1865|consen 171 PISPSQILSNLRNISAHF-----GRGRQEDAHEFLRFTVDAMQKACLPGHK-QVD------------------------- 219 (545)
T ss_pred ccChHHHHHhhhhhcccc-----cCCchhhHHHHHHHHHHHHHHhhcCCCc-cCC-------------------------
Confidence 899999999999998886 8899999999999999999988741100 000
Q ss_pred ccccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecC---CCcccc
Q 017509 172 SAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSST 247 (370)
Q Consensus 172 ~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~---~~c~~c 247 (370)
.....+++|+++|+|-+.+.++| .|.+.+.++|+.++|+|+|. ...+|+++|+.|...|.++| |.|..|
T Consensus 220 -----~~sq~ttlv~~iFGG~LrS~vkC~~C~~vS~tyE~~~dltvei~--d~~sl~~AL~qFt~~E~L~gen~Y~C~~C 292 (545)
T KOG1865|consen 220 -----PRSQDTTLVHQIFGGYLRSQIKCLHCKGVSDTYEPYLDLTLEIQ--DASSLQQALEQFTKPEKLDGENAYHCGRC 292 (545)
T ss_pred -----cccccceehhhhhccchhhceecccCCCcccccccccceEEEec--cchhHHHHHHHhhhHHhhCCccccccchh
Confidence 01112346999999999999999 89999999999999999996 66899999999999999976 788888
Q ss_pred CCCcceeeeEEEeecccCcceEEEEeeEEeCCCCeeccCcccccCcccccCcccccCCCCCCccEEEEEEEEeecCCCCC
Q 017509 248 GNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSK 327 (370)
Q Consensus 248 ~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~p~~l~l~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~ 327 (370)
+.++.+.++..|.++|.||+|+|+||+. ++..||.++|.||+.|||.+|+. .+.+....|+|+|||+|.|.+..+
T Consensus 293 --k~~v~A~K~lti~raPnVLTi~LKRF~~--~~~gKI~K~I~fPE~LDl~PyMS-~~~e~s~~Y~LYavlVH~g~~~~~ 367 (545)
T KOG1865|consen 293 --KQKVPASKQLTIHRAPNVLTLHLKRFSN--GTGGKISKPVSFPETLDLQPYMS-QPNEGSTVYKLYAVLVHLGTSCHS 367 (545)
T ss_pred --hhhCcccceeeeecCCceEEEeeehhcc--CcccccccccCCccccccccccc-CCCCCCceEEEEEEEEeccccccC
Confidence 7888999999999999999999999996 67899999999999999999997 556788999999999999999999
Q ss_pred ceEEEEEEcCCCCeEEEeCCcceeeccccccCCCcEEEEEEe
Q 017509 328 GHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 369 (370)
Q Consensus 328 GHY~a~vr~~~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~r 369 (370)
|||+||||..+|.||.+||+.|+.++.+.|+++.||||||.|
T Consensus 368 GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R 409 (545)
T KOG1865|consen 368 GHYFCYVKSQNGQWYKMDDSEVTQSSIESVLSQQAYILFYAR 409 (545)
T ss_pred CceEEEEEcCCCceEEccCceeeeccccceecccceEEEEEe
Confidence 999999999999999999999999999999999999999997
No 2
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.5e-60 Score=430.69 Aligned_cols=300 Identities=32% Similarity=0.486 Sum_probs=253.6
Q ss_pred CCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhcc---CCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCC
Q 017509 17 RGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR---DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPF 93 (370)
Q Consensus 17 ~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~---~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 93 (370)
+||.|+||||||||+||+|+++|+|+++++..... .......++.++|.+++..++.. .....+
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~-------------~~~~~~ 67 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYS-------------GDRSPY 67 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcC-------------CCCCCc
Confidence 69999999999999999999999999999875432 13445678999999999998422 223568
Q ss_pred ChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCcc
Q 017509 94 SPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSA 173 (370)
Q Consensus 94 ~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (370)
.|..|+.++....+.| .++.||||+||+..||+.|++++.........
T Consensus 68 ~~~~~l~~~~~~~~~f-----~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~--------------------------- 115 (328)
T cd02660 68 GPINLLYLSWKHSRNL-----AGYSQQDAHEFFQFLLDQLHTHYGGDKNEAND--------------------------- 115 (328)
T ss_pred CHHHHHHHHHhhchhh-----cccccccHHHHHHHHHHHHHHHhhcccccccc---------------------------
Confidence 8999999998877665 78899999999999999999987543221000
Q ss_pred ccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCc-------------ccCHHHHHHhcCCCcee
Q 017509 174 VTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEA-------------VHTIEDALRLFSAPENL 239 (370)
Q Consensus 174 ~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~-------------~~sl~~~l~~~~~~e~~ 239 (370)
.....++|.++|+|.+.+.++| .|++.+.+.++++.|+|++|... ..+|+++|+.++.+|.+
T Consensus 116 ----~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~ 191 (328)
T cd02660 116 ----ESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKL 191 (328)
T ss_pred ----cccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCcccc
Confidence 0011246899999999999999 89999999999999999998653 38999999999999998
Q ss_pred cCC--CccccCCCcceeeeEEEeecccCcceEEEEeeEEeCC-CCeeccCcccccCcccccCccccc--------CCCCC
Q 017509 240 EGY--RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGS-QGSTKLHKSVRFPLQLVLGRDLLV--------TPSAE 308 (370)
Q Consensus 240 ~~~--~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~-~~~~K~~~~v~~p~~l~l~~~~~~--------~~~~~ 308 (370)
++. .|+.|+. ++.+.++..|.++|++|+|||+||.++. +...|+..+|.||..|||.+|+.. .....
T Consensus 192 ~~~~~~C~~C~~--~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~ 269 (328)
T cd02660 192 GDFAYKCSGCGS--TQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDP 269 (328)
T ss_pred CCCCccCCCCCC--ccceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCCEechhhhcccccccccccccCCC
Confidence 874 7998854 4588999999999999999999999986 556899999999999999998764 23456
Q ss_pred CccEEEEEEEEeecCCCCCceEEEEEEcCCCCeEEEeCCcceeeccccccCCCcEEEEEE
Q 017509 309 GRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 368 (370)
Q Consensus 309 ~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~ 368 (370)
...|+|+|||+|.|+ ..+|||+||+|..+++|++|||+.|+++++++|...+||||||.
T Consensus 270 ~~~Y~L~avi~H~G~-~~~GHY~~~~~~~~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 270 DYTYDLFAVVVHKGT-LDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred CceEEEEEEEEeecc-CCCCcEEEEEECCCCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 789999999999998 78999999999977899999999999999999999999999993
No 3
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.2e-60 Score=423.97 Aligned_cols=286 Identities=33% Similarity=0.464 Sum_probs=237.1
Q ss_pred CcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCCChHH
Q 017509 18 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSM 97 (370)
Q Consensus 18 GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~ 97 (370)
||.|+||||||||+||+|++ .++.++|+.++..|+... .....++|..
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~--------------------~~l~~~L~~lf~~l~~~~------------~~~~~isP~~ 48 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF--------------------ENLLTCLKDLFESISEQK------------KRTGVISPKK 48 (300)
T ss_pred CccCCCcceehhHHHHHhhh--------------------HHHHHHHHHHHHHHHhCC------------CCCeeECHHH
Confidence 89999999999999999987 457788999999887542 2235689999
Q ss_pred HHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCcccccc
Q 017509 98 FEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRT 177 (370)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (370)
|.+++....+.| .+++||||+|||..||+.|++++............ ..+...
T Consensus 49 f~~~l~~~~~~f-----~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~-----------~~~~~~----------- 101 (300)
T cd02663 49 FITRLKRENELF-----DNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRK-----------LNNNNN----------- 101 (300)
T ss_pred HHHHHHhhcCCC-----CCCccccHHHHHHHHHHHHHHHHHHHhhccccccc-----------cccccc-----------
Confidence 999999887776 88899999999999999999998765432111000 000000
Q ss_pred ccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecC---CCccccCCCcce
Q 017509 178 QSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNAGVV 253 (370)
Q Consensus 178 ~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~---~~c~~c~~~~~~ 253 (370)
.....++|.++|+|++.+.++| .|+..+.+.++|+.|+|+|+. ..+|+++|+.|+.+|.+++ +.|+.|+ .++
T Consensus 102 ~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~Lsl~i~~--~~sl~~~L~~~~~~E~l~~~~~~~C~~C~--~~~ 177 (300)
T cd02663 102 AEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVEQ--NTSITSCLRQFSATETLCGRNKFYCDECC--SLQ 177 (300)
T ss_pred CCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEeccCCCC--cCCHHHHHHHhhcccccCCCCcEECCCCC--Cce
Confidence 0112346899999999999999 899999999999999999975 5799999999999999976 6798884 456
Q ss_pred eeeEEEeecccCcceEEEEeeEEeCCC--CeeccCcccccCcccccCcccccCCCCCCccEEEEEEEEeecCCCCCceEE
Q 017509 254 TAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYT 331 (370)
Q Consensus 254 ~~~~~~~i~~lP~~L~i~l~R~~~~~~--~~~K~~~~v~~p~~l~l~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~ 331 (370)
.+.++..|.++|++|+|||+||.++.. +..|+..+|.||..|++..+.. ........|+|+|||+|.|.++++|||+
T Consensus 178 ~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~-~~~~~~~~Y~L~~vi~H~G~~~~~GHY~ 256 (300)
T cd02663 178 EAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTD-DAENPDRLYELVAVVVHIGGGPNHGHYV 256 (300)
T ss_pred eEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcEEecccccc-ccCCCCeEEEEEEEEEEecCCCCCCceE
Confidence 899999999999999999999998853 4689999999999999986532 2234467999999999999889999999
Q ss_pred EEEEcCCCCeEEEeCCcceeecccccc--------CCCcEEEEEE
Q 017509 332 ADARYFNDQWLHFDDASVTAIGTSKVL--------HDQAYVLFYK 368 (370)
Q Consensus 332 a~vr~~~~~W~~~nD~~V~~v~~~~v~--------~~~~yil~Y~ 368 (370)
||+|. +++|++|||+.|++++.++|. ..+||||||+
T Consensus 257 a~~k~-~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 257 SIVKS-HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred EEEEC-CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 99999 889999999999999998886 4699999996
No 4
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.4e-59 Score=421.51 Aligned_cols=274 Identities=29% Similarity=0.475 Sum_probs=229.5
Q ss_pred CcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCCChHH
Q 017509 18 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSM 97 (370)
Q Consensus 18 GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~ 97 (370)
||.|+||||||||+||+|+++|+||+++++..... .....++..+|..++..+... ...++.|..
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~-~~~~~~~~~~L~~lf~~l~~~--------------~~~~~~~~~ 65 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPR-LGDSQSVMKKLQLLQAHLMHT--------------QRRAEAPPD 65 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccc-cCCcchHHHHHHHHHHHHhhc--------------CCcccCCHH
Confidence 89999999999999999999999999998865422 223456778888888776532 123355554
Q ss_pred -HHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCccccc
Q 017509 98 -FEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTR 176 (370)
Q Consensus 98 -~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (370)
+...+. .+. |..+.||||+||+..||+.|+.
T Consensus 66 ~~l~~~~--~~~-----f~~~~QqDa~EFl~~lLd~l~~----------------------------------------- 97 (327)
T cd02664 66 YFLEASR--PPW-----FTPGSQQDCSEYLRYLLDRLHT----------------------------------------- 97 (327)
T ss_pred HHHHHhc--ccc-----cCCCCcCCHHHHHHHHHHHHHH-----------------------------------------
Confidence 554432 233 4778999999999999999982
Q ss_pred cccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecC---CCccccCCCcc
Q 017509 177 TQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNAGV 252 (370)
Q Consensus 177 ~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~---~~c~~c~~~~~ 252 (370)
+|.++|.|++.+.++| .|+..+.+.+++..|+|++| +|+++|+.++.+|.++| +.|+.|+. .
T Consensus 98 -------~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~-----sl~~~l~~~~~~E~l~g~n~~~C~~C~~--~ 163 (327)
T cd02664 98 -------LIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP-----SVQDLLNYFLSPEKLTGDNQYYCEKCAS--L 163 (327)
T ss_pred -------HHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC-----CHHHHHHHhcCeeEccCCCceeCCccCC--c
Confidence 2889999999999999 89999999999999999997 89999999999999887 78999854 4
Q ss_pred eeeeEEEeecccCcceEEEEeeEEeCC--CCeeccCcccccCcccccCcccccC------------------CCCCCccE
Q 017509 253 VTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVT------------------PSAEGRKY 312 (370)
Q Consensus 253 ~~~~~~~~i~~lP~~L~i~l~R~~~~~--~~~~K~~~~v~~p~~l~l~~~~~~~------------------~~~~~~~Y 312 (370)
+.+.++..|.++|++|+|||+||.++. +...|+.++|.||..|||..+.... .......|
T Consensus 164 ~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 243 (327)
T cd02664 164 QDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHY 243 (327)
T ss_pred cceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCccccccccccccccccccccccccccCCCceE
Confidence 589999999999999999999999884 3468999999999999998776321 11346789
Q ss_pred EEEEEEEeecCCCCCceEEEEEEcCC---------------------CCeEEEeCCcceeeccccccC-------CCcEE
Q 017509 313 ELVATVTHHGRDPSKGHYTADARYFN---------------------DQWLHFDDASVTAIGTSKVLH-------DQAYV 364 (370)
Q Consensus 313 ~L~~vi~H~G~~~~~GHY~a~vr~~~---------------------~~W~~~nD~~V~~v~~~~v~~-------~~~yi 364 (370)
+|.|||+|.|.++++|||+||+|... ++||+|||+.|++++.++|.+ .+|||
T Consensus 244 ~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYl 323 (327)
T cd02664 244 RLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYI 323 (327)
T ss_pred EEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEE
Confidence 99999999998789999999999854 789999999999999999975 79999
Q ss_pred EEEE
Q 017509 365 LFYK 368 (370)
Q Consensus 365 l~Y~ 368 (370)
|||+
T Consensus 324 LfY~ 327 (327)
T cd02664 324 LFYE 327 (327)
T ss_pred EEeC
Confidence 9995
No 5
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.6e-59 Score=415.83 Aligned_cols=273 Identities=27% Similarity=0.393 Sum_probs=225.8
Q ss_pred CCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCCCh
Q 017509 16 PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSP 95 (370)
Q Consensus 16 p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~p 95 (370)
.+||.|+||||||||+||+|+++|+|++.+.+..... ......+.+..+++.++.. ....++|
T Consensus 24 ~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~---~~~~~~q~~~~~l~~~~~~--------------~~~~~~P 86 (332)
T cd02671 24 FVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI---SSVEQLQSSFLLNPEKYND--------------ELANQAP 86 (332)
T ss_pred CcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc---CcHHHHHHHHHHHHHHHhh--------------cccccCH
Confidence 3999999999999999999999999999987654111 0011122222223333211 1233569
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCcccc
Q 017509 96 SMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVT 175 (370)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (370)
..|..++++..+.| ..+.||||+|||..||+.|+..
T Consensus 87 ~~~~~~l~~~~~~f-----~~~~QQDA~EFl~~LLd~L~~~--------------------------------------- 122 (332)
T cd02671 87 RRLLNALREVNPMY-----EGYLQHDAQEVLQCILGNIQEL--------------------------------------- 122 (332)
T ss_pred HHHHHHHHHhcccc-----CCccccCHHHHHHHHHHHHHHH---------------------------------------
Confidence 99999999988776 7889999999999999999842
Q ss_pred ccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCc-----------------ccCHHHHHHhcCCCc
Q 017509 176 RTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEA-----------------VHTIEDALRLFSAPE 237 (370)
Q Consensus 176 ~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~-----------------~~sl~~~l~~~~~~e 237 (370)
+.++|.|.+.+.++| .|+..+.+.++|++|+|+++... ..+|+++|+.|+.+|
T Consensus 123 ---------i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E 193 (332)
T cd02671 123 ---------VEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVE 193 (332)
T ss_pred ---------HHhhhceEEEEEEEeCCCCCeeceecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcc
Confidence 789999999999999 99999999999999999998652 369999999999999
Q ss_pred eecC---CCccccCCCcceeeeEEEeecccCcceEEEEeeEEeCC------CCeeccCcccccCcccccCcccccCCCCC
Q 017509 238 NLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGS------QGSTKLHKSVRFPLQLVLGRDLLVTPSAE 308 (370)
Q Consensus 238 ~~~~---~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~------~~~~K~~~~v~~p~~l~l~~~~~~~~~~~ 308 (370)
.+.| +.|+.| +.++.+.++..|.++|++|+|||+||.+++ +...|++++|.||..|++.++.. ...
T Consensus 194 ~l~g~n~y~C~~C--~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~---~~~ 268 (332)
T cd02671 194 RIVGEDKYFCENC--HHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWST---KPK 268 (332)
T ss_pred eecCCCCeeCCCC--CCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCccccccccccC---CCC
Confidence 9965 788888 456689999999999999999999999764 35789999999999999986532 345
Q ss_pred CccEEEEEEEEeecCCCCCceEEEEEEcCCCCeEEEeCCcceeecccccc---------CCCcEEEEEE
Q 017509 309 GRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVL---------HDQAYVLFYK 368 (370)
Q Consensus 309 ~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~~V~~v~~~~v~---------~~~~yil~Y~ 368 (370)
...|+|+|||+|.|.+.++|||+||+| |++|||+.|++++++++. ..+||||||+
T Consensus 269 ~~~Y~L~~VI~H~G~~~~~GHY~a~vr-----W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 269 NDVYRLFAVVMHSGATISSGHYTAYVR-----WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred CCeEEEEEEEEEcCCCCCCCeEEEEEE-----EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 789999999999998789999999999 999999999999887664 2599999995
No 6
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4.8e-59 Score=418.81 Aligned_cols=289 Identities=28% Similarity=0.431 Sum_probs=243.3
Q ss_pred CcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccC--CCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCCCh
Q 017509 18 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD--IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSP 95 (370)
Q Consensus 18 GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~p 95 (370)
||.|+||||||||+||+|+++|+|++++.+..... ......++.++|++|+..|+.. ...++|
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~---------------~~~i~p 65 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKK---------------QEPVPP 65 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhC---------------CCcCCc
Confidence 89999999999999999999999999998765322 2335678999999999998632 246999
Q ss_pred HHHHHHHhhcCCCCCCCCC-CCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCccc
Q 017509 96 SMFEAVLKNFTPDVPNSIS-GRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 174 (370)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~-~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (370)
..|...+....+.|..... .+++||||+||+..||+.|++++.... .
T Consensus 66 ~~~~~~l~~~~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~~---------------------------~----- 113 (305)
T cd02657 66 IEFLQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGAG---------------------------S----- 113 (305)
T ss_pred HHHHHHHHHHCcCcccccCCCCccccCHHHHHHHHHHHHHHHhcccC---------------------------C-----
Confidence 9999999998887743222 456999999999999999999873200 0
Q ss_pred cccccCCcchhhhccceEEEeEEEe-cCC-CcCeeecCCEEeeeecCCCc-ccCHHHHHHhcCCCceecCCCccccCCCc
Q 017509 175 TRTQSFLPSALSDIFGGQLKSVVKA-QGN-KASATVQPFLLLHLDIYSEA-VHTIEDALRLFSAPENLEGYRTSSTGNAG 251 (370)
Q Consensus 175 ~~~~~~~~~~i~~~F~~~~~~~~~C-~c~-~~~~~~~~~~~l~l~i~~~~-~~sl~~~l~~~~~~e~~~~~~c~~c~~~~ 251 (370)
..++|.++|.|++.+.++| .|+ ..+.+.+++..|+|+++... ..+|+++|..+++++.. ..|+.|+.
T Consensus 114 ------~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~-- 183 (305)
T cd02657 114 ------KGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQCHISITTEVNYLQDGLKKGLEEEIE--KHSPTLGR-- 183 (305)
T ss_pred ------CCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEEeecCCCcccccHHHHHHHhhhhhhh--hcCcccCC--
Confidence 1135899999999999999 888 78999999999999998652 56899999999876654 36777754
Q ss_pred ceeeeEEEeecccCcceEEEEeeEEeCC--CCeeccCcccccCcccccCcccccCCCCCCccEEEEEEEEeecCCCCCce
Q 017509 252 VVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGH 329 (370)
Q Consensus 252 ~~~~~~~~~i~~lP~~L~i~l~R~~~~~--~~~~K~~~~v~~p~~l~l~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GH 329 (370)
...+.+...|.++|++|+|||+||.++. +...|+.++|.||..||+.+++. ....|+|+|||+|.|.++.+||
T Consensus 184 ~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~-----~~~~Y~L~~vI~H~G~~~~~GH 258 (305)
T cd02657 184 DAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYELCT-----PSGYYELVAVITHQGRSADSGH 258 (305)
T ss_pred CceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEecccccC-----CCCcEEEEEEEEecCCCCCCcE
Confidence 3467889999999999999999999874 34679999999999999998874 4679999999999998799999
Q ss_pred EEEEEEcCC-CCeEEEeCCcceeeccccccC-------CCcEEEEEE
Q 017509 330 YTADARYFN-DQWLHFDDASVTAIGTSKVLH-------DQAYVLFYK 368 (370)
Q Consensus 330 Y~a~vr~~~-~~W~~~nD~~V~~v~~~~v~~-------~~~yil~Y~ 368 (370)
|+||+|..+ ++||+|||+.|+++++++|.. .+||||||+
T Consensus 259 Y~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 259 YVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred EEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 999999974 899999999999999999974 599999996
No 7
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-58 Score=416.57 Aligned_cols=291 Identities=25% Similarity=0.385 Sum_probs=239.6
Q ss_pred CcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccC---CCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCCC
Q 017509 18 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD---IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFS 94 (370)
Q Consensus 18 GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 94 (370)
||.|+||||||||+||+|+++|+||+++....... ......++.+.|.+++..|+...................++.
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 89999999999999999999999999997633221 122355788999999988764321111100011122456799
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCccc
Q 017509 95 PSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 174 (370)
Q Consensus 95 p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (370)
|..|..+++...+.| ..+.||||+||+..||+.|++++....
T Consensus 81 p~~~~~~l~~~~~~f-----~~~~QqDa~Efl~~ll~~l~~~~~~~~--------------------------------- 122 (311)
T cd02658 81 PSMFKALIGKGHPEF-----STMRQQDALEFLLHLIDKLDRESFKNL--------------------------------- 122 (311)
T ss_pred cHHHHHHHhccChhh-----cccccccHHHHHHHHHHHHHHhhcccc---------------------------------
Confidence 999999999988876 788999999999999999998873110
Q ss_pred cccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCc------------ccCHHHHHHhcCCCceecC
Q 017509 175 TRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEA------------VHTIEDALRLFSAPENLEG 241 (370)
Q Consensus 175 ~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~------------~~sl~~~l~~~~~~e~~~~ 241 (370)
..++.++|.|.+.+.++| .|+..+.+.+++..++|++|... ..+|+++|+.++.+|.++
T Consensus 123 -------~~~~~~~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~- 194 (311)
T cd02658 123 -------GLNPNDLFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE- 194 (311)
T ss_pred -------cCCchhheEEEeeEEEEcCCCCCEEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc-
Confidence 013778999999999999 88888889999999999998653 459999999999999988
Q ss_pred CCccccCCCcceeeeEEEeecccCcceEEEEeeEEeC-CCCeeccCcccccCcccccCcccccCCCCCCccEEEEEEEEe
Q 017509 242 YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG-SQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTH 320 (370)
Q Consensus 242 ~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~-~~~~~K~~~~v~~p~~l~l~~~~~~~~~~~~~~Y~L~~vi~H 320 (370)
+.|+.| +.++.+.++.+|.++|++|+|||+||.++ .+...|+...|.||..+ ....|+|+|||+|
T Consensus 195 ~~C~~C--~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~l------------~~~~Y~L~~vI~H 260 (311)
T cd02658 195 DFCSTC--KEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEEL------------GPGKYELIAFISH 260 (311)
T ss_pred ccccCC--CCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCCcC------------CCCcEEEEEEEEc
Confidence 456667 45568999999999999999999999995 55678999999999877 2467999999999
Q ss_pred ecCCCCCceEEEEEEcC---CCCeEEEeCCcceeeccccccCCCcEEEEEE
Q 017509 321 HGRDPSKGHYTADARYF---NDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 368 (370)
Q Consensus 321 ~G~~~~~GHY~a~vr~~---~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~ 368 (370)
.|.+.++|||++|+|.. +++||+|||+.|++++..++..++||||||+
T Consensus 261 ~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 261 KGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred cCCCCCCcceEEEEeCCCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 99889999999999996 2899999999999999999999999999996
No 8
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.3e-58 Score=418.05 Aligned_cols=286 Identities=26% Similarity=0.411 Sum_probs=239.8
Q ss_pred CcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCC----------CCCCCchHHHHHHHHhccCCCCCCCCcccccccc
Q 017509 18 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDI----------PKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 87 (370)
Q Consensus 18 GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~----------~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 87 (370)
||.|+||||||||+||+|+++|+|++++++...... +....++.++|+.|+..|+..
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~------------- 67 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFG------------- 67 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhC-------------
Confidence 899999999999999999999999999987543221 112467999999999998743
Q ss_pred cCCCCCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhC
Q 017509 88 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVG 167 (370)
Q Consensus 88 ~~~~~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (370)
....++|..|..+++ +..++||||+||+..||+.|++++......
T Consensus 68 -~~~~i~p~~f~~~l~----------~~~~~QqDa~EFl~~lLd~L~~~l~~~~~~------------------------ 112 (324)
T cd02668 68 -NRSVVDPSGFVKALG----------LDTGQQQDAQEFSKLFLSLLEAKLSKSKNP------------------------ 112 (324)
T ss_pred -CCceEChHHHHHHhC----------CCCccccCHHHHHHHHHHHHHHHHhhccCC------------------------
Confidence 245689999998874 255799999999999999999987432100
Q ss_pred CCCCccccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecC---CC
Q 017509 168 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YR 243 (370)
Q Consensus 168 ~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~---~~ 243 (370)
...+++.++|.|++...++| .|+..+.+.++|+.|+|+++. ..+|+++|+.++.+|.++| +.
T Consensus 113 ------------~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~--~~sl~~~L~~~~~~e~l~g~~~~~ 178 (324)
T cd02668 113 ------------DLKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLKG--HKTLEECIDEFLKEEQLTGDNQYF 178 (324)
T ss_pred ------------cccchhhhhcceEEEEEEEeCCCCCccccccccEEEEEEecc--cCCHHHHHHHhhCceecCCCcccc
Confidence 01235889999999999999 899989999999999999964 4799999999999999876 67
Q ss_pred ccccCCCcceeeeEEEeecccCcceEEEEeeEEeCC--CCeeccCcccccCcccccCcccccCCCCCCccEEEEEEEEee
Q 017509 244 TSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHH 321 (370)
Q Consensus 244 c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~--~~~~K~~~~v~~p~~l~l~~~~~~~~~~~~~~Y~L~~vi~H~ 321 (370)
|+.|+ .++.+.++..|.++|++|+|||+||.++. +...|+..+|.||..|||.+|+... ......|+|+|||+|.
T Consensus 179 C~~C~--~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~-~~~~~~Y~L~~vI~H~ 255 (324)
T cd02668 179 CESCN--SKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLAES-DEGSYVYELSGVLIHQ 255 (324)
T ss_pred CCCCC--ceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechhhcccc-cCCCcEEEEEEEEEEc
Confidence 88884 55688999999999999999999999883 4568999999999999999887432 3457889999999999
Q ss_pred cCCCCCceEEEEEEcC-CCCeEEEeCCcceeeccccc---------------------cCCCcEEEEEE
Q 017509 322 GRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKV---------------------LHDQAYVLFYK 368 (370)
Q Consensus 322 G~~~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~v---------------------~~~~~yil~Y~ 368 (370)
|.++.+|||+||+|.. +++||+|||+.|++++.+.+ .+.+||||||+
T Consensus 256 G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 256 GVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred CCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 9888999999999986 58999999999999987655 23599999995
No 9
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3e-58 Score=414.42 Aligned_cols=298 Identities=34% Similarity=0.542 Sum_probs=250.5
Q ss_pred CCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhcc-CCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCCC
Q 017509 16 PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR-DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFS 94 (370)
Q Consensus 16 p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 94 (370)
|+||.|+|||||+||+||+|+++|+|++++.+.... .......++.++|..++..+... ....+.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~ 66 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALAS--------------SGPGSA 66 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhC--------------CCCccC
Confidence 799999999999999999999999999999764322 23445668899999988876543 245688
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCccc
Q 017509 95 PSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 174 (370)
Q Consensus 95 p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (370)
|..|..++....+.| ..+.||||+|||..||+.|+++.......... .
T Consensus 67 p~~~~~~l~~~~~~f-----~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~-----------------~---------- 114 (304)
T cd02661 67 PRIFSSNLKQISKHF-----RIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA-----------------V---------- 114 (304)
T ss_pred hHHHHHHHHHHHHhh-----cCcchhhHHHHHHHHHHHHHHHHhhhcccccc-----------------c----------
Confidence 999999999887776 78899999999999999999886543221100 0
Q ss_pred cccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecC---CCccccCCC
Q 017509 175 TRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNA 250 (370)
Q Consensus 175 ~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~---~~c~~c~~~ 250 (370)
.......+++.++|+|++.+.++| .|+..+.+.++++.|+|++|.. .+|+++|+.++.+|.+++ +.|+.|++
T Consensus 115 -~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~~~--~~l~~~l~~~~~~e~~~~~~~~~C~~C~~- 190 (304)
T cd02661 115 -DPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGA--DSLEDALEQFTKPEQLDGENKYKCERCKK- 190 (304)
T ss_pred -CccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeecCCC--CcHHHHHHHhcCceeeCCCCCeeCCCCCC-
Confidence 000111246999999999999999 8999999999999999999854 799999999999998887 67888854
Q ss_pred cceeeeEEEeecccCcceEEEEeeEEeCCCCeeccCcccccCcccccCcccccCCCCCCccEEEEEEEEeecCCCCCceE
Q 017509 251 GVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHY 330 (370)
Q Consensus 251 ~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~p~~l~l~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY 330 (370)
...+.++..|.++|++|+|||+||.++ ...|+.+.|.||..|++..++.. .......|+|+|||+|.|.+..+|||
T Consensus 191 -~~~~~~~~~i~~~P~iL~i~l~Rf~~~--~~~Ki~~~v~f~~~L~l~~~~~~-~~~~~~~Y~L~~vi~H~G~~~~~GHY 266 (304)
T cd02661 191 -KVKASKQLTIHRAPNVLTIHLKRFSNF--RGGKINKQISFPETLDLSPYMSQ-PNDGPLKYKLYAVLVHSGFSPHSGHY 266 (304)
T ss_pred -ccceEEEEEEecCCcEEEEEEeccccC--CccccCCeEecCCeechhhcccc-CCCCCceeeEEEEEEECCCCCCCcCC
Confidence 447888899999999999999999977 46899999999999999988753 24567899999999999997799999
Q ss_pred EEEEEcCCCCeEEEeCCcceeeccccccCCCcEEEEE
Q 017509 331 TADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 367 (370)
Q Consensus 331 ~a~vr~~~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y 367 (370)
+||+|..+++|++|||+.|++++.+++...+||||||
T Consensus 267 ~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y 303 (304)
T cd02661 267 YCYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYILFY 303 (304)
T ss_pred EEEEECCCCCEEEEeCCeeEECCHHHhcCCCcEEEEe
Confidence 9999998889999999999999999999999999999
No 10
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.6e-58 Score=407.17 Aligned_cols=246 Identities=31% Similarity=0.508 Sum_probs=216.3
Q ss_pred CcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCCChHH
Q 017509 18 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSM 97 (370)
Q Consensus 18 GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~ 97 (370)
||.|+||||||||+||+|+++|+|++++.+ +|..
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~----------------------------------------------~P~~ 34 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE----------------------------------------------TPKE 34 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH----------------------------------------------CHHH
Confidence 899999999999999999999999999876 3455
Q ss_pred HHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCcccccc
Q 017509 98 FEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRT 177 (370)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (370)
|+..+....+.| ..++||||+|||..||+.|+.
T Consensus 35 ~~~~l~~~~~~f-----~~~~QqDA~Efl~~lld~l~~------------------------------------------ 67 (279)
T cd02667 35 LFSQVCRKAPQF-----KGYQQQDSHELLRYLLDGLRT------------------------------------------ 67 (279)
T ss_pred HHHHHHHhhHhh-----cCCchhhHHHHHHHHHHHHHH------------------------------------------
Confidence 666666666665 778999999999999999982
Q ss_pred ccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCC--CcccCHHHHHHhcCCCceecC---CCccccCCCc
Q 017509 178 QSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYS--EAVHTIEDALRLFSAPENLEG---YRTSSTGNAG 251 (370)
Q Consensus 178 ~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~--~~~~sl~~~l~~~~~~e~~~~---~~c~~c~~~~ 251 (370)
++.++|.|++.+.++| .|+..+.+.++|+.|+|+++. ....+|+++|+.++.+|.++| +.|+.|+.
T Consensus 68 ------~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~-- 139 (279)
T cd02667 68 ------FIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK-- 139 (279)
T ss_pred ------hhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccCCCCCHHHHHHhhcCeeEecCCCcccCCccCc--
Confidence 2889999999999999 899999999999999998864 346799999999999999987 56666642
Q ss_pred ceeeeEEEeecccCcceEEEEeeEEeCCC-CeeccCcccccCcccccCcccccC----CCCCCccEEEEEEEEeecCCCC
Q 017509 252 VVTAKKSVKIQTLSKILILHLMRFSYGSQ-GSTKLHKSVRFPLQLVLGRDLLVT----PSAEGRKYELVATVTHHGRDPS 326 (370)
Q Consensus 252 ~~~~~~~~~i~~lP~~L~i~l~R~~~~~~-~~~K~~~~v~~p~~l~l~~~~~~~----~~~~~~~Y~L~~vi~H~G~~~~ 326 (370)
+.++..|.++|++|+|||+||.++.. ...|+.++|.||..|||.+|+... .......|+|+|||+|.|.. .
T Consensus 140 ---a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~-~ 215 (279)
T cd02667 140 ---AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTM-R 215 (279)
T ss_pred ---eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhhccCccccccccCCCceEEEEEEEEEeCCC-C
Confidence 78889999999999999999998854 578999999999999999987652 23457899999999999995 9
Q ss_pred CceEEEEEEcC----------------------CCCeEEEeCCcceeeccccccCCCcEEEEEE
Q 017509 327 KGHYTADARYF----------------------NDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 368 (370)
Q Consensus 327 ~GHY~a~vr~~----------------------~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~ 368 (370)
+|||+||+|.. ++.||+|||+.|++++.++|...+||||||+
T Consensus 216 ~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 216 SGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred CCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence 99999999974 5789999999999999999999999999996
No 11
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.7e-56 Score=414.89 Aligned_cols=289 Identities=22% Similarity=0.348 Sum_probs=235.1
Q ss_pred CCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccC-CCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCCC
Q 017509 16 PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD-IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFS 94 (370)
Q Consensus 16 p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 94 (370)
.+||.|+||||||||+||+|+++|+||++++...... ......++.++|..+++.++... .....++
T Consensus 119 ~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~------------~~~~~is 186 (440)
T cd02669 119 FVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPR------------NFKGHVS 186 (440)
T ss_pred ccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccc------------cCCCccC
Confidence 4899999999999999999999999999998754221 11245688999999999987542 2235699
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCccc
Q 017509 95 PSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 174 (370)
Q Consensus 95 p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (370)
|..|+.++....+. .|.++.||||+|||.+||+.|++++.... ..
T Consensus 187 P~~fl~~l~~~~~~----~f~~~~QqDA~EFl~~LLd~L~~~l~~~~--------------------------~~----- 231 (440)
T cd02669 187 PHELLQAVSKVSKK----KFSITEQSDPVEFLSWLLNTLHKDLGGSK--------------------------KP----- 231 (440)
T ss_pred HHHHHHHHHhhccc----ccCCcccCCHHHHHHHHHHHHHHHhccCC--------------------------CC-----
Confidence 99999999875432 24888999999999999999999874210 00
Q ss_pred cccccCCcchhhhccceEEEeEEEe-cCC---------------CcCeeecCCEEeeeecCCCc------------ccCH
Q 017509 175 TRTQSFLPSALSDIFGGQLKSVVKA-QGN---------------KASATVQPFLLLHLDIYSEA------------VHTI 226 (370)
Q Consensus 175 ~~~~~~~~~~i~~~F~~~~~~~~~C-~c~---------------~~~~~~~~~~~l~l~i~~~~------------~~sl 226 (370)
..++|+++|.|++.+.++| .|. ..+.+.++|+.|+|+||... ..+|
T Consensus 232 ------~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l 305 (440)
T cd02669 232 ------NSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPL 305 (440)
T ss_pred ------CCCcceeccCceEEEEEEeecccccccccccccccccccceeeeccceEEEecCCCCccccccccccccCcccH
Confidence 1235899999999999887 332 34667899999999998652 2567
Q ss_pred HHHHHhcCCCceecCCCccccCCCcceeeeEEEeecccCcceEEEEeeEEeCCCCeeccCcccccCcc-cccCcccccCC
Q 017509 227 EDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTP 305 (370)
Q Consensus 227 ~~~l~~~~~~e~~~~~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~p~~-l~l~~~~~~~~ 305 (370)
+++|+. +.|+.|. ....+.++.+|.++|++|+|||+||.++.+...|+.+.|.||.. |||.+|+....
T Consensus 306 ~e~L~k---------y~~~~c~--~~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~ 374 (440)
T cd02669 306 KQLLKK---------YDGKTET--ELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDK 374 (440)
T ss_pred HHHHHh---------cCCccce--ecccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCccc
Confidence 777755 4556663 34467899999999999999999999987777899999999997 89999985422
Q ss_pred --CCCCccEEEEEEEEeecCCCCCceEEEEEEcC-CCCeEEEeCCcceeeccccccCCCcEEEEEE
Q 017509 306 --SAEGRKYELVATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 368 (370)
Q Consensus 306 --~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~ 368 (370)
......|+|+|||+|.|..+.+|||+||+|+. +|+||+|||+.|+++++++|..++||||||+
T Consensus 375 ~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 375 PSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred cccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 24578999999999999944999999999985 7899999999999999999999999999996
No 12
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-55 Score=401.53 Aligned_cols=292 Identities=23% Similarity=0.381 Sum_probs=238.0
Q ss_pred CCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCCCh
Q 017509 16 PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSP 95 (370)
Q Consensus 16 p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~p 95 (370)
.+||.|+||||||||+||+|+++|+|++++++...........++.++|..++..|+.... ..+.|
T Consensus 2 ~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~lf~~~~~~~~--------------~~~~~ 67 (334)
T cd02659 2 YVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSES--------------PVKTT 67 (334)
T ss_pred CCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccCcccccHHHHHHHHHHHHHhCCc--------------cccCc
Confidence 4799999999999999999999999999999863333334567799999999998874321 12333
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCcccc
Q 017509 96 SMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVT 175 (370)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (370)
..+. .+.. +....+..+.||||+||+..|++.|++++....
T Consensus 68 ~~~~-~~~~----~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~---------------------------------- 108 (334)
T cd02659 68 ELTD-KTRS----FGWDSLNTFEQHDVQEFFRVLFDKLEEKLKGTG---------------------------------- 108 (334)
T ss_pred chhh-eecc----CCCCCCCcccchhHHHHHHHHHHHHHHHhccCc----------------------------------
Confidence 3332 1111 122335778999999999999999998873210
Q ss_pred ccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecC---CCccccCCCc
Q 017509 176 RTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNAG 251 (370)
Q Consensus 176 ~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~---~~c~~c~~~~ 251 (370)
..+++.++|.|.+...++| .|+..+...++++.|+|+++. ..+|+++|..++.++.+++ +.|+.|+.
T Consensus 109 -----~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~--~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~-- 179 (334)
T cd02659 109 -----QEGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVKG--KKNLEESLDAYVQGETLEGDNKYFCEKCGK-- 179 (334)
T ss_pred -----ccchhhhhCceEEEeEEEecCCCceecccccceEEEEEcCC--CCCHHHHHHHhcCeeEecCCccEecCcCCC--
Confidence 1134889999999999999 898899999999999999974 4689999999999999886 78888854
Q ss_pred ceeeeEEEeecccCcceEEEEeeEEeC--CCCeeccCcccccCcccccCcccccC----------CCCCCccEEEEEEEE
Q 017509 252 VVTAKKSVKIQTLSKILILHLMRFSYG--SQGSTKLHKSVRFPLQLVLGRDLLVT----------PSAEGRKYELVATVT 319 (370)
Q Consensus 252 ~~~~~~~~~i~~lP~~L~i~l~R~~~~--~~~~~K~~~~v~~p~~l~l~~~~~~~----------~~~~~~~Y~L~~vi~ 319 (370)
+..+.++..|.++|++|+|||+||.++ .+...|+..+|.||..||+..++... .......|+|+|||+
T Consensus 180 ~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~ 259 (334)
T cd02659 180 KVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLV 259 (334)
T ss_pred cccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCccccccccccccccccccCCCCeeEEEEEEEE
Confidence 447888899999999999999999987 34568999999999999999887543 234578899999999
Q ss_pred eecCCCCCceEEEEEEcC-CCCeEEEeCCcceeecccccc----------------------CCCcEEEEEEeC
Q 017509 320 HHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVL----------------------HDQAYVLFYKQV 370 (370)
Q Consensus 320 H~G~~~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~v~----------------------~~~~yil~Y~rv 370 (370)
|.|+ ..+|||+||+|.. +++|++|||+.|+++++++|. ..+||||||+|.
T Consensus 260 H~G~-~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~ 332 (334)
T cd02659 260 HSGD-AHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERK 332 (334)
T ss_pred ecCC-CCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEe
Confidence 9997 8999999999985 689999999999999998885 237999999983
No 13
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-57 Score=406.55 Aligned_cols=322 Identities=28% Similarity=0.446 Sum_probs=280.3
Q ss_pred CCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccC------CCCCCCchHHHHHHHHhccCCCCCCCCcccccccc
Q 017509 14 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD------IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 87 (370)
Q Consensus 14 ~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 87 (370)
...+||.|+||||||||.||||.|++.+|+++..-...+ .-.....++.+++.|+++++..
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~------------- 329 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDG------------- 329 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCc-------------
Confidence 345899999999999999999999999999997644322 1234567889999999998843
Q ss_pred cCCCCCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCC----ccccccccccchhh
Q 017509 88 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSING----ANTALVSLAEEDEW 163 (370)
Q Consensus 88 ~~~~~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 163 (370)
.-.+++|..|+..+++++..| .|+.|||++||+.++||.|||+++++..++-.... .+.-.+...+++.|
T Consensus 330 -~~haf~Ps~fK~tIG~fn~~f-----sGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW 403 (823)
T COG5560 330 -NLHAFTPSGFKKTIGSFNEEF-----SGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECW 403 (823)
T ss_pred -cccccChHHHHHHHhhhHHHh-----cCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHH
Confidence 346699999999999998776 89999999999999999999999998876533322 23334567788999
Q ss_pred hhhCCCCCccccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCC---------------------
Q 017509 164 ETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSE--------------------- 221 (370)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~--------------------- 221 (370)
......+.+. |.++|.|-+.+++.| .|+.++.+++||++|+||+|..
T Consensus 404 ~~H~kRNdSi-----------ItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~i 472 (823)
T COG5560 404 WEHLKRNDSI-----------ITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKI 472 (823)
T ss_pred HHHHhcCccc-----------HHHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEE
Confidence 9998888875 999999999999999 9999999999999999999810
Q ss_pred --------------------------------------------------------------------------------
Q 017509 222 -------------------------------------------------------------------------------- 221 (370)
Q Consensus 222 -------------------------------------------------------------------------------- 221 (370)
T Consensus 473 el~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~g 552 (823)
T COG5560 473 ELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKG 552 (823)
T ss_pred EEeccchHHHHHHHHHHHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEecccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 017509 222 -------------------------------------------------------------------------------- 221 (370)
Q Consensus 222 -------------------------------------------------------------------------------- 221 (370)
T Consensus 553 Yks~rlFg~pflqlnv~~~~~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~vee 632 (823)
T COG5560 553 YKSKRLFGDPFLQLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEE 632 (823)
T ss_pred ccchhhhCCcceEEEeecchhhHHHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhh
Confidence
Q ss_pred ----------------------------------------cccCHHHHHHhcCCCceecC---CCccccCCCcceeeeEE
Q 017509 222 ----------------------------------------AVHTIEDALRLFSAPENLEG---YRTSSTGNAGVVTAKKS 258 (370)
Q Consensus 222 ----------------------------------------~~~sl~~~l~~~~~~e~~~~---~~c~~c~~~~~~~~~~~ 258 (370)
..++|++||..|.++|.+.- +.|+.| ++...++|+
T Consensus 633 E~~~n~nd~vvi~cew~ek~y~~lFsy~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgC--kefrqasKq 710 (823)
T COG5560 633 EGQMNFNDAVVISCEWEEKRYLSLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGC--KEFRQASKQ 710 (823)
T ss_pred hhccCCCcceEEeeeccccchhhhhcCCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCch--Hhhhhhhhh
Confidence 25799999999999998753 788888 777899999
Q ss_pred EeecccCcceEEEEeeEEeCCCCeeccCcccccCcc-cccCcccccCCCCCCccEEEEEEEEeecCCCCCceEEEEEEcC
Q 017509 259 VKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYF 337 (370)
Q Consensus 259 ~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~p~~-l~l~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~ 337 (370)
..|+++|.||+|||+||+.......|+.+-|.||.. |||+.+.....+.. ..|.|+||=.|+|. +++|||+||+|+.
T Consensus 711 melwrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs~~~~~~~~p~-liydlyavDNHygg-lsgGHYtAyarn~ 788 (823)
T COG5560 711 MELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPR-LIYDLYAVDNHYGG-LSGGHYTAYARNF 788 (823)
T ss_pred hhhhcCChheeeehhhhhhcccchhhhhhhhccccccccccceEEeecCcc-eEEEeeeccccccc-cCCcceeeeeecc
Confidence 999999999999999999888888999999999988 99998877664444 89999999999999 9999999999997
Q ss_pred -CCCeEEEeCCcceeeccccccCCCcEEEEEEe
Q 017509 338 -NDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 369 (370)
Q Consensus 338 -~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~r 369 (370)
+++||+|||++|+++.+++...+.||+|||+|
T Consensus 789 ~n~~wy~fdDsritevdped~vtssaYvLFyrr 821 (823)
T COG5560 789 ANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821 (823)
T ss_pred cCCceEEecCccccccCccccccceeEEEEEEe
Confidence 66899999999999999999999999999998
No 14
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.5e-54 Score=372.84 Aligned_cols=212 Identities=33% Similarity=0.531 Sum_probs=193.4
Q ss_pred CcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCCChHH
Q 017509 18 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSM 97 (370)
Q Consensus 18 GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~ 97 (370)
||.|+||||||||+||+|+++|+||+++.+..
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 89999999999999999999999999876511
Q ss_pred HHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCcccccc
Q 017509 98 FEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRT 177 (370)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (370)
.||||+|||..||+.|+..
T Consensus 33 --------------------~QqDa~EFl~~ll~~l~~~----------------------------------------- 51 (240)
T cd02662 33 --------------------EQQDAHELFQVLLETLEQL----------------------------------------- 51 (240)
T ss_pred --------------------hhcCHHHHHHHHHHHHHHh-----------------------------------------
Confidence 8999999999999999832
Q ss_pred ccCCcchhhhccceEEEeEEEe-cCCCcCe-eecCCEEeeeecCCCc---ccCHHHHHHhcCCCceecCCCccccCCCcc
Q 017509 178 QSFLPSALSDIFGGQLKSVVKA-QGNKASA-TVQPFLLLHLDIYSEA---VHTIEDALRLFSAPENLEGYRTSSTGNAGV 252 (370)
Q Consensus 178 ~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~-~~~~~~~l~l~i~~~~---~~sl~~~l~~~~~~e~~~~~~c~~c~~~~~ 252 (370)
+.++|.|.+.+.++| .|+..+. +.++++.|+|++|... ..+|+++|+.++.+|.++++.|+.|
T Consensus 52 -------i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~~~~~~sl~~~L~~~~~~E~l~~~~C~~C----- 119 (240)
T cd02662 52 -------LKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDDYKCDRC----- 119 (240)
T ss_pred -------ccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccCCCCCCCHHHHHHHhcCcccccCcCCCCC-----
Confidence 778999999999999 7887655 5899999999999764 6799999999999999999999998
Q ss_pred eeeeEEEeecccCcceEEEEeeEEeCC-CCeeccCcccccCcccccCcccccCCCCCCccEEEEEEEEeecCCCCCceEE
Q 017509 253 VTAKKSVKIQTLSKILILHLMRFSYGS-QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYT 331 (370)
Q Consensus 253 ~~~~~~~~i~~lP~~L~i~l~R~~~~~-~~~~K~~~~v~~p~~l~l~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~ 331 (370)
+..|.++|++|+|||+||.++. +...|++++|.||..| ....|+|+|||+|.|. .++|||+
T Consensus 120 -----~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l------------~~~~Y~L~avi~H~G~-~~~GHY~ 181 (240)
T cd02662 120 -----QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL------------PKVLYRLRAVVVHYGS-HSSGHYV 181 (240)
T ss_pred -----eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc------------CCceEEEEEEEEEecc-CCCceEE
Confidence 4679999999999999999997 7789999999999998 3688999999999999 5999999
Q ss_pred EEEEcC---------------------CCCeEEEeCCcceeeccccc-cCCCcEEEEEE
Q 017509 332 ADARYF---------------------NDQWLHFDDASVTAIGTSKV-LHDQAYVLFYK 368 (370)
Q Consensus 332 a~vr~~---------------------~~~W~~~nD~~V~~v~~~~v-~~~~~yil~Y~ 368 (370)
||+|.+ ++.||+|||+.|++++.++| ...+||||||+
T Consensus 182 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~aY~LfYe 240 (240)
T cd02662 182 CYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQKSAYMLFYE 240 (240)
T ss_pred EEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHhhCCCEEEEEeC
Confidence 999985 37899999999999999999 88899999996
No 15
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-53 Score=354.10 Aligned_cols=325 Identities=27% Similarity=0.430 Sum_probs=241.1
Q ss_pred CCCCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhh-----hccCCC-C-CCCchHHHHHHHHhccCCCCCCCCccccc
Q 017509 12 KDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQEL-----RTRDIP-K-AGYPTLTAFVGFVSDFDTPSGGSSKKKNI 84 (370)
Q Consensus 12 ~~~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~-----~~~~~~-~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 84 (370)
....|.||.|.|||||||++||+|+++..+...++.. -..+.+ . .+.-..+.|.-+...+..
T Consensus 67 dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~----------- 135 (415)
T COG5533 67 DNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGC----------- 135 (415)
T ss_pred cccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhcccc-----------
Confidence 4456799999999999999999999999999854321 111222 1 222344445555554432
Q ss_pred ccccCCCCCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCC---C----cccccccc
Q 017509 85 SVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSIN---G----ANTALVSL 157 (370)
Q Consensus 85 ~~~~~~~~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~---~----~~~~~~~~ 157 (370)
....+|+|..|++.+....+.| .+..|||++||+.++||.||++++.-...+.... + .+.-+++.
T Consensus 136 ---Hg~~sis~~nF~~i~~~~n~~f-----s~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~ 207 (415)
T COG5533 136 ---HGPKSISPRNFIDILSGRNKLF-----SGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSH 207 (415)
T ss_pred ---CCCcccchHHHHHHHccccccc-----cccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcch
Confidence 3356699999999999987776 7779999999999999999999865433221111 0 01112223
Q ss_pred ccchhhhhhCCCCCccccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCC
Q 017509 158 AEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAP 236 (370)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~ 236 (370)
...-+|+..-..+.+ .|.+.|.|+..+.++| .|+++++++.+|..|.++++.-....|++||..|.++
T Consensus 208 ~S~~EWn~~L~sn~S-----------~v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~ 276 (415)
T COG5533 208 FSHHEWNLHLRSNKS-----------LVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEE 276 (415)
T ss_pred hhhhhhHHhhccchH-----------HHHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhH
Confidence 334566666666655 4889999999999999 9999999999999999999877777899999999999
Q ss_pred ceecC---CCccccCCCcceeeeEEEeecccCcceEEEEeeEEeCCCCeeccCccccc----CcccccCcccccCCCCCC
Q 017509 237 ENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRF----PLQLVLGRDLLVTPSAEG 309 (370)
Q Consensus 237 e~~~~---~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~----p~~l~l~~~~~~~~~~~~ 309 (370)
|.++| |.|++|+ .++.+.++..|.++|++|+|||+||...-++..|++.+-.. |.+..+..-......-..
T Consensus 277 e~L~g~d~W~CpkC~--~k~ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P 354 (415)
T COG5533 277 EKLEGKDAWRCPKCG--RKESSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIP 354 (415)
T ss_pred HhhcCcccccCchhc--ccccchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCc
Confidence 99876 8899995 45578899999999999999999999654455565544322 222111111111122346
Q ss_pred ccEEEEEEEEeecCCCCCceEEEEEEcCCCCeEEEeCCcceeeccc-cccCCCcEEEEEEeC
Q 017509 310 RKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTS-KVLHDQAYVLFYKQV 370 (370)
Q Consensus 310 ~~Y~L~~vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~~V~~v~~~-~v~~~~~yil~Y~rv 370 (370)
.+|.|.|||||.|+ +++|||+++|+. ++.|+.+||+.|++++-. +.....+|||||+|+
T Consensus 355 ~~Y~L~gv~Ch~G~-L~gGHY~s~v~~-~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 355 RKYSLLGVVCHNGT-LNGGHYFSEVKR-SGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred cceeEEEEEeecce-ecCceeEEeeee-cCceEEechhheeeccceecccCCcceEEEEEec
Confidence 88999999999999 999999999999 577999999999999753 444458999999995
No 16
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-51 Score=370.18 Aligned_cols=312 Identities=24% Similarity=0.382 Sum_probs=252.0
Q ss_pred CCCCCCCCCCCCCC---CCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCC---CCCCchHHHHHHHHhccCCCCC
Q 017509 3 AINEPVKSVKDLLP---RGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIP---KAGYPTLTAFVGFVSDFDTPSG 76 (370)
Q Consensus 3 ~~~~~~~~~~~~~p---~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~ 76 (370)
++.++....+|.++ +||.|+||+||+|||+|+|+.+|.|...+........+ .....+.+.+.+|+..|.....
T Consensus 291 ~~~esg~~l~p~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgky 370 (763)
T KOG0944|consen 291 ALEESGAPLEPLFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKY 370 (763)
T ss_pred eeccCCCccccccCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcc
Confidence 34455555555444 89999999999999999999999999988766322222 3345566777777776654432
Q ss_pred CCCcccccccccCCCCCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccc
Q 017509 77 GSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVS 156 (370)
Q Consensus 77 ~~~~~~~~~~~~~~~~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 156 (370)
+.. ..-...++.|+|.+|+..+++-+|.| +.++||||+|||.+||+.|++.....
T Consensus 371 s~p----~~~~~~qngIsP~mFK~~igknHpeF-----st~~QQDA~EFllfLl~ki~~n~rs~---------------- 425 (763)
T KOG0944|consen 371 SKP----LMDPSNQNGISPLMFKALIGKNHPEF-----STNRQQDAQEFLLFLLEKIRENSRSS---------------- 425 (763)
T ss_pred cCc----cCCccccCCcCHHHHHHHHcCCCccc-----cchhhhhHHHHHHHHHHHHhhccccc----------------
Confidence 222 11112257899999999999999997 88899999999999999998764211
Q ss_pred cccchhhhhhCCCCCccccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCC----CcccCHHHHHH
Q 017509 157 LAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYS----EAVHTIEDALR 231 (370)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~----~~~~sl~~~l~ 231 (370)
. .+++++|......++.| .|.+.+.+.++...+.|++|. ....++..+|+
T Consensus 426 ------------------------~-~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cle 480 (763)
T KOG0944|consen 426 ------------------------L-PNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKVPISACLE 480 (763)
T ss_pred ------------------------C-CCHHHHHHhhhhhhhhhhccccccccchhheeeEeeccccccccccCCHHHHHH
Confidence 0 13789999999999999 999999999999999999974 23579999999
Q ss_pred hcCCCceecCCCccccCCCcceeeeEEEeecccCcceEEEEeeEEeCCCCeeccCcccccCcccccCccccc--------
Q 017509 232 LFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLV-------- 303 (370)
Q Consensus 232 ~~~~~e~~~~~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~p~~l~l~~~~~~-------- 303 (370)
.||.+ .++++.|..|+ ++..+.++.+|+++|+||+||+.||.+..+..+|+...+++|+.||++.+...
T Consensus 481 aff~p-q~~df~s~ac~--~K~~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~iempe~ldls~~rs~g~~p~ee~ 557 (763)
T KOG0944|consen 481 AFFEP-QVDDFWSTACG--EKKGATKTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMPEELDLSSYRSKGLQPGEEA 557 (763)
T ss_pred HhcCC-cchhhhhHhhc--CccccccccccccCCceEEEEeeEEEecCceeeeeccceecchhhchhhhhhcCCCCcccc
Confidence 99999 66678898884 45589999999999999999999999988889999999999999999765411
Q ss_pred --------------------------------------------------------------------------------
Q 017509 304 -------------------------------------------------------------------------------- 303 (370)
Q Consensus 304 -------------------------------------------------------------------------------- 303 (370)
T Consensus 558 lpde~~~~~~~~~d~s~i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~ 637 (763)
T KOG0944|consen 558 LPDEAPETSEFAADRSVISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEE 637 (763)
T ss_pred cCCcCcccCccchhHHHHHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChh
Confidence
Q ss_pred -------------------------------------------------------------CCCCCCccEEEEEEEEeec
Q 017509 304 -------------------------------------------------------------TPSAEGRKYELVATVTHHG 322 (370)
Q Consensus 304 -------------------------------------------------------------~~~~~~~~Y~L~~vi~H~G 322 (370)
...+...+|+|.|+|+|.|
T Consensus 638 ~v~si~smGf~~~qa~~aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~~Y~L~a~IsHmG 717 (763)
T KOG0944|consen 638 SVASIVSMGFSRNQAIKALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTGKDGPGKYALFAFISHMG 717 (763)
T ss_pred HheeeeeecCcHHHHHHHHHhcCccHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccCCCCCcceeEEEEEecCC
Confidence 0125688999999999999
Q ss_pred CCCCCceEEEEEEcCCCCeEEEeCCcceeeccccccCCCcEEEEEEeC
Q 017509 323 RDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 370 (370)
Q Consensus 323 ~~~~~GHY~a~vr~~~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~rv 370 (370)
++..+|||+|++|. .|+|+.|||++|- ..++--++.+||.||+|+
T Consensus 718 ts~~sGHYV~hirK-egkWVlfNDeKv~--~S~~ppK~lgYvY~y~R~ 762 (763)
T KOG0944|consen 718 TSAHSGHYVCHIRK-EGKWVLFNDEKVA--ASQEPPKDLGYVYLYTRI 762 (763)
T ss_pred CCCCCcceEEEEee-cCcEEEEcchhhh--hccCChhhcceEEEEEec
Confidence 99999999999999 5889999999987 333344679999999996
No 17
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-49 Score=342.54 Aligned_cols=200 Identities=41% Similarity=0.643 Sum_probs=180.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCccccccccCCcchhhhccceEEEeEE
Q 017509 118 RQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 197 (370)
Q Consensus 118 ~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~ 197 (370)
.||||+||+..||+.|+. ++.++|.|.+...+
T Consensus 21 ~QqDa~Ef~~~ll~~l~~------------------------------------------------~i~~~F~~~~~~~~ 52 (230)
T cd02674 21 DQQDAQEFLLFLLDGLHS------------------------------------------------IIVDLFQGQLKSRL 52 (230)
T ss_pred hhhhHHHHHHHHHHHHhh------------------------------------------------hHHheeCCEEeCcE
Confidence 689999999999999981 28899999999999
Q ss_pred Ee-cCCCcCeeecCCEEeeeecCCCc----ccCHHHHHHhcCCCceecC---CCccccCCCcceeeeEEEeecccCcceE
Q 017509 198 KA-QGNKASATVQPFLLLHLDIYSEA----VHTIEDALRLFSAPENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILI 269 (370)
Q Consensus 198 ~C-~c~~~~~~~~~~~~l~l~i~~~~----~~sl~~~l~~~~~~e~~~~---~~c~~c~~~~~~~~~~~~~i~~lP~~L~ 269 (370)
+| .|+..+.+.++++.|+|++|... ..+|+++|+.++.++.+++ +.|+.|+ ....+.++..|.++|++|+
T Consensus 53 ~C~~C~~~~~~~e~~~~l~l~ip~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~--~~~~~~~~~~i~~lP~iLi 130 (230)
T cd02674 53 TCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCK--KKRKATKKLTISRLPKVLI 130 (230)
T ss_pred EcCCCcCCcceecceeEEEEecccccCCCCCCCHHHHHHHhcCccccCCCCceeCCCCC--CccceEEEEEEecCChhhE
Confidence 99 89999999999999999999765 6799999999999998876 6688885 4457889999999999999
Q ss_pred EEEeeEEeCCCCeeccCcccccCcc-cccCcccccCCCCCCccEEEEEEEEeecCCCCCceEEEEEEcCC-CCeEEEeCC
Q 017509 270 LHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFN-DQWLHFDDA 347 (370)
Q Consensus 270 i~l~R~~~~~~~~~K~~~~v~~p~~-l~l~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~~-~~W~~~nD~ 347 (370)
|+|+||.++.+...|+..+|.||.+ +++.+++.........+|+|+|||+|.|.. ++|||+||+|..+ ++|++|||+
T Consensus 131 i~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~~-~~GHY~~~~~~~~~~~W~~fnD~ 209 (230)
T cd02674 131 IHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSL-NGGHYTAYCKNNETNDWYKFDDS 209 (230)
T ss_pred eEhhheecCCCCcccCCceEeccccccccccccCcccCCCCceEEEEEEEEeeCCC-CCcEEEEEEECCCCCceEEEcCC
Confidence 9999999998778999999999964 899887655566778899999999999995 9999999999974 899999999
Q ss_pred cceeeccccccCCCcEEEEEE
Q 017509 348 SVTAIGTSKVLHDQAYVLFYK 368 (370)
Q Consensus 348 ~V~~v~~~~v~~~~~yil~Y~ 368 (370)
.|++++.+++...+||||||+
T Consensus 210 ~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 210 RVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred eEEEcCHHHccCCCceEEEeC
Confidence 999999999988899999996
No 18
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-48 Score=364.68 Aligned_cols=327 Identities=31% Similarity=0.446 Sum_probs=257.7
Q ss_pred CCCCCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhcc-----CCCCCCCchHHHHHHHHhccCCCCCCCCcccccc
Q 017509 11 VKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR-----DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNIS 85 (370)
Q Consensus 11 ~~~~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~-----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 85 (370)
.....++||.|+|||||||++||||++++.|+..++..... .......++..++..++..++..
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~----------- 364 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHG----------- 364 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccC-----------
Confidence 34455699999999999999999999999999555443211 22334556777777777766544
Q ss_pred cccCCCCCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCC---CCCCcccc----ccccc
Q 017509 86 VLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGEST---SINGANTA----LVSLA 158 (370)
Q Consensus 86 ~~~~~~~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~---~~~~~~~~----~~~~~ 158 (370)
.....+.|..|+..+.++.+.| .++.|||++||+..+++.||++++....... ...+.... ..+..
T Consensus 365 --~~~~s~~P~~f~~~~~~y~~~~-----~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~ 437 (653)
T KOG1868|consen 365 --HGQFSVLPRRFIRVLKRYSPNF-----SGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKK 437 (653)
T ss_pred --CCceecCcHHHHHHHhhccccc-----ccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccch
Confidence 2356689999999999999887 6678999999999999999999987654211 11111111 12222
Q ss_pred cchhhhhhCCCCCccccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcc----cCHHHHHHhc
Q 017509 159 EEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAV----HTIEDALRLF 233 (370)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~----~sl~~~l~~~ 233 (370)
....|........+ .|.++|.|++.+.++| .|+..+.++++|..++|+||..+. .+|++|+..|
T Consensus 438 s~~~w~~~~~~~d~-----------~i~~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~f 506 (653)
T KOG1868|consen 438 SLAEWLRYLEEEDS-----------KIGDLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLF 506 (653)
T ss_pred hHHHHHhhccccch-----------HHHHHHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccc
Confidence 34456555543332 2889999999999999 999999999999999999997653 4599999999
Q ss_pred CCCceecC---CCccccCCCcceee--eEEEeecccCcceEEEEeeEEeCCCCeeccCcccccCcc-cccCcccccCCCC
Q 017509 234 SAPENLEG---YRTSSTGNAGVVTA--KKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSA 307 (370)
Q Consensus 234 ~~~e~~~~---~~c~~c~~~~~~~~--~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~p~~-l~l~~~~~~~~~~ 307 (370)
++.|.+++ +.|+.|+... .. .|+..|++||++|++||+||..+.....|...-|+||.. .++..+.. ....
T Consensus 507 t~~ekle~~~~w~Cp~c~~~~--~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~-~~~~ 583 (653)
T KOG1868|consen 507 TKEEKLEGDEAWLCPRCKHKE--SSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFA-EKGN 583 (653)
T ss_pred cchhhcccccccCCccccCcc--cccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhcc-ccCC
Confidence 99999998 8888885443 44 388899999999999999999997778899999999987 66655433 3344
Q ss_pred CCccEEEEEEEEeecCCCCCceEEEEEEcC-CCCeEEEeCCcceeeccccccCCCcEEEEEEeC
Q 017509 308 EGRKYELVATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 370 (370)
Q Consensus 308 ~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~rv 370 (370)
....|+|+|||+|.|. .++|||+||++.. .+.|+.|||+.|+.++...+....||||||+|+
T Consensus 584 ~~~~Y~L~aVv~H~Gt-l~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~ 646 (653)
T KOG1868|consen 584 NPKSYRLYAVVNHSGT-LNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERL 646 (653)
T ss_pred CccceeeEEEEeccCc-ccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeecC
Confidence 4555999999999995 9999999999885 678999999999999999998899999999985
No 19
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-47 Score=322.02 Aligned_cols=199 Identities=22% Similarity=0.347 Sum_probs=163.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCccccccccCCcchhhhccceEEEeEE
Q 017509 118 RQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 197 (370)
Q Consensus 118 ~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~ 197 (370)
.||||+||+..||+.|++.+........ ......++|.++|.|++.+.+
T Consensus 21 ~QQDa~Ef~~~Lld~Le~~l~~~~~~~~-------------------------------~~~~~~~~i~~lF~G~~~~~~ 69 (228)
T cd02665 21 QQQDVSEFTHLLLDWLEDAFQAAAEAIS-------------------------------PGEKSKNPMVQLFYGTFLTEG 69 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccc-------------------------------ccccccchHhhceEEEEEEEE
Confidence 5899999999999999999853211000 000123469999999998766
Q ss_pred EecCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecCCCccccCCCcceeeeEEEeecccCcceEEEEeeEEe
Q 017509 198 KAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSY 277 (370)
Q Consensus 198 ~C~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~ 277 (370)
.| |+..+.+.|+|+.|+|+|. +..+|+++|+.++.++.+++..|..+ ..+.++..|.++|++|+|||+||.+
T Consensus 70 ~~-~~~~s~~~E~F~~L~l~i~--~~~~L~e~L~~~~~ee~l~~~~~~~~-----~~~~~~~~i~~lP~vL~i~LkRF~~ 141 (228)
T cd02665 70 VL-EGKPFCNCETFGQYPLQVN--GYGNLHECLEAAMFEGEVELLPSDHS-----VKSGQERWFTELPPVLTFELSRFEF 141 (228)
T ss_pred EE-CCCcccccCccEEEEEEEC--CCCCHHHHHHHhhhhcccccccccch-----hhhhhhhhhhhCChhhEEEeEeeEE
Confidence 66 5566889999999999994 45799999999999888887555432 2455667899999999999999999
Q ss_pred CCCCeeccCcccccCcccccCcccccCCCCCCccEEEEEEEEeecCCCCCceEEEEEEcC-CCCeEEEeCCcceeecccc
Q 017509 278 GSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSK 356 (370)
Q Consensus 278 ~~~~~~K~~~~v~~p~~l~l~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~ 356 (370)
+.+...|+.++|.||..| ....|+|+|||+|.|. +++|||++|+|.. +++||+|||+.|++++.++
T Consensus 142 ~~~~~~Ki~~~v~FP~~l------------~~~~Y~L~aVi~H~G~-~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~ 208 (228)
T cd02665 142 NQGRPEKIHDKLEFPQII------------QQVPYELHAVLVHEGQ-ANAGHYWAYIYKQSRQEWEKYNDISVTESSWEE 208 (228)
T ss_pred cCCccEECCEEEEeeCcc------------CCceeEEEEEEEecCC-CCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHH
Confidence 987789999999999987 2468999999999999 8999999999975 7899999999999999998
Q ss_pred ccC--------CCcEEEEEE
Q 017509 357 VLH--------DQAYVLFYK 368 (370)
Q Consensus 357 v~~--------~~~yil~Y~ 368 (370)
|.. .+||||||.
T Consensus 209 v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 209 VERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred HhhhccCCCCCCceEEEEEC
Confidence 863 489999993
No 20
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=2.6e-47 Score=337.00 Aligned_cols=253 Identities=33% Similarity=0.557 Sum_probs=198.8
Q ss_pred CCCcccCCchhhHHHHHHHHhCCHHHHHHHHhh------hccCCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccC
Q 017509 16 PRGLINSGNLCFLNATLQALMSCSPFVQLLQEL------RTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDI 89 (370)
Q Consensus 16 p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~------~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 89 (370)
|+||.|.|||||+||+||+|+++|+|++++.+. ..........++.+.|..++..++... ..
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~------------~~ 68 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSN------------SS 68 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSC------------SS
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhc------------cc
Confidence 789999999999999999999999999999975 222333445679999999999987542 34
Q ss_pred CCCCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCC
Q 017509 90 GRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPK 169 (370)
Q Consensus 90 ~~~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (370)
...+.|..+..++....+.| ..+.||||+||+..|++.|++++..... ...|.....
T Consensus 69 ~~~i~~~~~~~~l~~~~~~~-----~~~~qqDa~E~l~~ll~~l~~~~~~~~~-----------------~~~~~~~~~- 125 (269)
T PF00443_consen 69 DSSISPSDFINALSSINPSF-----SNGEQQDAHEFLSFLLDWLDEEFNSSFK-----------------RKSWKNTNS- 125 (269)
T ss_dssp SSEEHCHHHHHHHHHHCGGG-----GSSSTEEHHHHHHHHHHHHHHHHTSCSS-----------------HHHHHHHHC-
T ss_pred ccceeecccccccccccccc-----ccccccchhhhhcccccccchhhccccc-----------------ccccccccc-
Confidence 56689999999999987775 6889999999999999999998743211 011111111
Q ss_pred CCccccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecCCCccccC
Q 017509 170 NKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTG 248 (370)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~~~c~~c~ 248 (370)
...+++.++|.+++...+.| .|+..
T Consensus 126 ----------~~~~~~~~~f~~~~~~~~~c~~c~~~-------------------------------------------- 151 (269)
T PF00443_consen 126 ----------SEDSLISDLFGGQFESSIKCSSCKNS-------------------------------------------- 151 (269)
T ss_dssp ----------CEESHHHHHH-EEEEEEEEETTTTCE--------------------------------------------
T ss_pred ----------cccccccccccccccccccccccccc--------------------------------------------
Confidence 12346899999999999999 66664
Q ss_pred CCcceeeeEEEeecccCcceEEEEeeEEeCC--CCeeccCcccccC-cccccCcccccCCC--CCCccEEEEEEEEeecC
Q 017509 249 NAGVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFP-LQLVLGRDLLVTPS--AEGRKYELVATVTHHGR 323 (370)
Q Consensus 249 ~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~--~~~~K~~~~v~~p-~~l~l~~~~~~~~~--~~~~~Y~L~~vi~H~G~ 323 (370)
...|.++|++|+|+|+||.++. +...|+..+|.+| ..|||..++..... .....|+|+|||+|.|
T Consensus 152 ---------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G- 221 (269)
T PF00443_consen 152 ---------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYG- 221 (269)
T ss_dssp ---------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEES-
T ss_pred ---------ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhhhcccc-
Confidence 4678999999999999997664 3479999999999 69999988754332 2478999999999999
Q ss_pred CCCCceEEEEEEcCC-CCeEEEeCCcceeeccccccC---CCcEEEEE
Q 017509 324 DPSKGHYTADARYFN-DQWLHFDDASVTAIGTSKVLH---DQAYVLFY 367 (370)
Q Consensus 324 ~~~~GHY~a~vr~~~-~~W~~~nD~~V~~v~~~~v~~---~~~yil~Y 367 (370)
+.++|||+||||+.+ ++|++|||++|++++.++|.. .+||||||
T Consensus 222 ~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 222 SADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp STTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred ccccceEEEeeccccCCeEEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence 599999999999864 569999999999999999988 89999999
No 21
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=9.3e-48 Score=343.91 Aligned_cols=276 Identities=21% Similarity=0.293 Sum_probs=211.2
Q ss_pred CCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCC------------C-C--------CCCchHHHHHHHHhccCCC
Q 017509 16 PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDI------------P-K--------AGYPTLTAFVGFVSDFDTP 74 (370)
Q Consensus 16 p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~------------~-~--------~~~~~~~~l~~l~~~~~~~ 74 (370)
|+||.|+||||||||+||+|+++|+||+++.+...... . . ...+++.+|+.||..|+..
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999999988652111 0 0 1125788999999998742
Q ss_pred CCCCCcccccccccCCCCCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccc
Q 017509 75 SGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTAL 154 (370)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~ 154 (370)
....+.|..++..+.. .||||+||+..+|+.|++++......... +
T Consensus 81 --------------~~~~v~P~~~l~~l~~-------------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~-------~ 126 (343)
T cd02666 81 --------------NTRSVTPSKELAYLAL-------------RQQDVTECIDNVLFQLEVALEPISNAFAG-------P 126 (343)
T ss_pred --------------CCCccCcHHHHHhccc-------------cccchHHHHHHHHHHHHHHhcCccccccC-------c
Confidence 3466889998876541 89999999999999999998543221000 0
Q ss_pred cccccchhhhhhCCCCCccccccccCCcchhhhccceEEEeEEEe-cCC---CcCeeecCCEEeeeecCC--------Cc
Q 017509 155 VSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGN---KASATVQPFLLLHLDIYS--------EA 222 (370)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~---~~~~~~~~~~~l~l~i~~--------~~ 222 (370)
...... ...+.|.++|.|++.+.++| .|+ ..+.+.|+|+.|+|+|+. .+
T Consensus 127 --------~~~~~~-----------~~~~~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~ 187 (343)
T cd02666 127 --------DTEDDK-----------EQSDLIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLE 187 (343)
T ss_pred --------cccccc-----------chhhhhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCcccccccccCC
Confidence 000000 11245999999999999998 554 688899999999999985 14
Q ss_pred ccCHHHHHHhcCCCceecCCCccccCCCcceeeeEEEeecccCcceEEEEeeEEeCCCCeeccCcccccCcccccCcccc
Q 017509 223 VHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLL 302 (370)
Q Consensus 223 ~~sl~~~l~~~~~~e~~~~~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~p~~l~l~~~~~ 302 (370)
..+|.++|+.++..|. |.++|++|.|||+ +........+..++.++|...+...++.
T Consensus 188 ~~~L~d~L~~~~~~e~----------------------~~~~P~vl~~qlq-~~~~~~~~~~~~dry~~~~~~~~~~~l~ 244 (343)
T cd02666 188 PKDLYDALDRYFDYDS----------------------LTKLPQRSQVQAQ-LAQPLQRELISMDRYELPSSIDDIDELI 244 (343)
T ss_pred CCCHHHHHHHhcChhh----------------------hccCCHHHHHHHh-hcccccchheeeccccccchHHHHHHHH
Confidence 6899999999997765 8899999999998 4444444556666666666555544332
Q ss_pred cC---------------------------CCCCCccEEEEEEEEeecCCCCCceEEEEEEcC-CCCeEEEeCCcceeecc
Q 017509 303 VT---------------------------PSAEGRKYELVATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGT 354 (370)
Q Consensus 303 ~~---------------------------~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~ 354 (370)
.. .+.....|+|+|||+|.|. .++|||++|+|+. ++.|++|||+.|++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~ 323 (343)
T cd02666 245 REAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFIHRGE-ASSGHYWVYIKDFEENVWRKYNDETVTVVPA 323 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEEeecC-CCCCeEEEEEEECCCCeEEEEECCeeEEecH
Confidence 10 1236888999999999999 6999999999986 57899999999999999
Q ss_pred ccccC------CCcEEEEEE
Q 017509 355 SKVLH------DQAYVLFYK 368 (370)
Q Consensus 355 ~~v~~------~~~yil~Y~ 368 (370)
+++.. .+||+|+|.
T Consensus 324 ~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 324 SEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred HHHhhcccCCCCCCEEEEeC
Confidence 88874 499999993
No 22
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.5e-46 Score=321.96 Aligned_cols=212 Identities=20% Similarity=0.270 Sum_probs=164.1
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCccccccccCCcchhhhccceEE
Q 017509 114 SGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 193 (370)
Q Consensus 114 ~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~ 193 (370)
|.+++||||||||..||+.|++++............ . .......++|.+++
T Consensus 28 F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~~~----------------------~-------~~~~~~~~~F~~~l 78 (245)
T cd02673 28 FDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPSNI----------------------E-------IKRLNPLEAFKYTI 78 (245)
T ss_pred cCCCchhhHHHHHHHHHHHHHHHHHhhcccCCCCcc----------------------c-------ccccCHhHheeeEE
Confidence 378899999999999999999877442211100000 0 00001357899999
Q ss_pred EeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecCCCccccCCCcceeeeEEEeecccCcceEEEE
Q 017509 194 KSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHL 272 (370)
Q Consensus 194 ~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l 272 (370)
.+.++| .|+.++.+.++++.|+|+++.....++++++..+...+.++ +.|+.|++. .+.+..+|.++|++|+|||
T Consensus 79 ~s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~~le~l~~~~~~~~~~e-~~C~~C~~~---~a~k~~~i~~~P~vL~i~l 154 (245)
T cd02673 79 ESSYVCIGCSFEENVSDVGNFLDVSMIDNKLDIDELLISNFKTWSPIE-KDCSSCKCE---SAISSERIMTFPECLSINL 154 (245)
T ss_pred EeEEEecCCCCeeeeccccceeccccccCCcchHHHHHHHhhcccccC-ccCCCCCCc---cceeechhhhCChhhEEee
Confidence 999999 99999999999999999998765567888888888777765 899999653 6778888999999999999
Q ss_pred eeEEeCCCCeeccCcccccCcccccCcccccCCCCCCccEEEEEEEEeecCCCCCceEEEEEEcC--CCCeEEEeCCcce
Q 017509 273 MRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYF--NDQWLHFDDASVT 350 (370)
Q Consensus 273 ~R~~~~~~~~~K~~~~v~~p~~l~l~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~--~~~W~~~nD~~V~ 350 (370)
+||.+... ....+..+ .+++.++.. ....|+|.|||+|.|.+.++|||+||+|.. +++||+|||+.|+
T Consensus 155 kRf~~~~~----~~~~~~~~-~~~~~~~~~-----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~ 224 (245)
T cd02673 155 KRYKLRIA----TSDYLKKN-EEIMKKYCG-----TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIR 224 (245)
T ss_pred Eeeeeccc----cccccccc-ccccccccC-----CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceee
Confidence 99985531 12222221 244554432 467799999999999889999999999985 5789999999999
Q ss_pred eecccccc---CCCcEEEEEE
Q 017509 351 AIGTSKVL---HDQAYVLFYK 368 (370)
Q Consensus 351 ~v~~~~v~---~~~~yil~Y~ 368 (370)
++++++|. .++||||||+
T Consensus 225 ~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 225 PVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred EcCHHHHhhccCCceEEEEEC
Confidence 99999998 5699999996
No 23
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.2e-44 Score=314.17 Aligned_cols=220 Identities=37% Similarity=0.586 Sum_probs=187.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCccccccccCCcchhhhccceEEEeEE
Q 017509 118 RQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 197 (370)
Q Consensus 118 ~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~ 197 (370)
.||||+|||..+++.|+.++...... ........+++.++|.+.+...+
T Consensus 21 ~q~Da~E~l~~ll~~l~~~~~~~~~~-------------------------------~~~~~~~~~~i~~~F~~~~~~~~ 69 (255)
T cd02257 21 EQQDAHEFLLFLLDKLHEELKKSSKR-------------------------------TSDSSSLKSLIHDLFGGKLESTI 69 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-------------------------------ccccccCCchhhhhcccEEeeEE
Confidence 68999999999999999998654321 00001112459999999999999
Q ss_pred Ee-cCCCcCeeecCCEEeeeecCCCc--ccCHHHHHHhcCCCceecCCCccccCCCcceeeeEEEeecccCcceEEEEee
Q 017509 198 KA-QGNKASATVQPFLLLHLDIYSEA--VHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMR 274 (370)
Q Consensus 198 ~C-~c~~~~~~~~~~~~l~l~i~~~~--~~sl~~~l~~~~~~e~~~~~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R 274 (370)
.| .|+........+..+.+++|... ..+|+++|+.++..+.+.+..|..|+......+.++..|.++|++|+|+++|
T Consensus 70 ~c~~c~~~~~~~~~~~~l~l~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R 149 (255)
T cd02257 70 VCLECGHESVSTEPELFLSLPLPVKGLPQVSLEDCLEKFFKEEILEGDNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKR 149 (255)
T ss_pred ECCCCCCCccCcccceeEEeeccCCCCCCCcHHHHHHHhhhhhccCCCCcccCCCCcccceeEEEecccCCceeEEEeec
Confidence 99 88777888888888898888764 7899999999999999999999998643556788999999999999999999
Q ss_pred EEeCC-CCeeccCcccccCcccccCcccc-----cCCCCCCccEEEEEEEEeecCCCCCceEEEEEEcCC-CCeEEEeCC
Q 017509 275 FSYGS-QGSTKLHKSVRFPLQLVLGRDLL-----VTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFN-DQWLHFDDA 347 (370)
Q Consensus 275 ~~~~~-~~~~K~~~~v~~p~~l~l~~~~~-----~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~~-~~W~~~nD~ 347 (370)
|..+. ....|+..+|.+|..+++..+.. .........|+|+|||+|.|.+.++|||+||+|..+ ++|++|||.
T Consensus 150 ~~~~~~~~~~k~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~ 229 (255)
T cd02257 150 FSFNEDGTKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDD 229 (255)
T ss_pred eeeccccccccCCCeEeCCCcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEecc
Confidence 99886 67789999999999999987754 234567889999999999999779999999999975 899999999
Q ss_pred cceeeccccc-----cCCCcEEEEEE
Q 017509 348 SVTAIGTSKV-----LHDQAYVLFYK 368 (370)
Q Consensus 348 ~V~~v~~~~v-----~~~~~yil~Y~ 368 (370)
.|++++.+++ ...+||+|||+
T Consensus 230 ~V~~v~~~~~~~~~~~~~~~yll~Y~ 255 (255)
T cd02257 230 KVTEVSEEEVLEFGSLSSSAYILFYE 255 (255)
T ss_pred ccEEcCHHHhhhccCCCCceEEEEEC
Confidence 9999999998 46799999995
No 24
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-46 Score=342.91 Aligned_cols=298 Identities=27% Similarity=0.421 Sum_probs=247.0
Q ss_pred CCCCCCCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhcc-CCC--CCCCchHHHHHHHHhccCCCCCCCCcccccc
Q 017509 9 KSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR-DIP--KAGYPTLTAFVGFVSDFDTPSGGSSKKKNIS 85 (370)
Q Consensus 9 ~~~~~~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~-~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 85 (370)
.+..+..-+||.|-|+|||||+++|-|+.+|.+++.+...... +.+ +-+..+.+.++.+|..+...
T Consensus 88 gsRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~s----------- 156 (944)
T KOG1866|consen 88 GSRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAAS----------- 156 (944)
T ss_pred CCCCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHHH-----------
Confidence 3445555699999999999999999999999999988765543 111 11222788888888776432
Q ss_pred cccCCCCCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhh
Q 017509 86 VLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWET 165 (370)
Q Consensus 86 ~~~~~~~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (370)
+-..+-|.-|-+.++.....+ ...+||||.|||..|+|.+++.++++..
T Consensus 157 ---~lQyyVPeg~Wk~Fr~~~~pl-----n~reqhDA~eFf~sLld~~De~LKklg~----------------------- 205 (944)
T KOG1866|consen 157 ---QLQYYVPEGFWKQFRLWGEPL-----NLREQHDALEFFNSLLDSLDEALKKLGH----------------------- 205 (944)
T ss_pred ---hhhhhcchhHHHHhhccCCcc-----chHhhhhHHHHHHHHHHHHHHHHHHhCC-----------------------
Confidence 224466788888887766554 5569999999999999999999987754
Q ss_pred hCCCCCccccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecC---
Q 017509 166 VGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG--- 241 (370)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~--- 241 (370)
+..+.+.|+|.....-.| .|.+.....|+|..|+|.|. ..+|+++|++|.+.+.++|
T Consensus 206 ----------------p~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l~i~---~~nLeesLeqfv~gevlEG~nA 266 (944)
T KOG1866|consen 206 ----------------PQLFSNTFGGSYSDQKICQGCPHRYECEESFTTLNLDIR---HQNLEESLEQFVKGEVLEGANA 266 (944)
T ss_pred ----------------cHHHHHHhcCccchhhhhccCCcccCccccceeeeeecc---cchHHHHHHHHHHHHHhcCcch
Confidence 335888999999999999 89888899999999999996 4699999999999999998
Q ss_pred CCccccCCCcceeeeEEEeecccCcceEEEEeeEEeC--CCCeeccCcccccCcccccCcccccC---------------
Q 017509 242 YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG--SQGSTKLHKSVRFPLQLVLGRDLLVT--------------- 304 (370)
Q Consensus 242 ~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~--~~~~~K~~~~v~~p~~l~l~~~~~~~--------------- 304 (370)
|.|++| ..+....+++.|.+||.+|.|||+||.++ +....|.++.++||..|||.+|+.+.
T Consensus 267 YhCeKC--deK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePYtvsg~a~~e~~~~~~g~~~ 344 (944)
T KOG1866|consen 267 YHCEKC--DEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPYTVSGVAKLEGENVESGQQL 344 (944)
T ss_pred hhhhhh--hhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcCCceeehhhhhhccccCCcCccc
Confidence 889999 55557788899999999999999999998 66689999999999999999997441
Q ss_pred -CCCCCccEEEEEEEEeecCCCCCceEEEEEEcC----CCCeEEEeCCcceeeccccccC--------------------
Q 017509 305 -PSAEGRKYELVATVTHHGRDPSKGHYTADARYF----NDQWLHFDDASVTAIGTSKVLH-------------------- 359 (370)
Q Consensus 305 -~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~----~~~W~~~nD~~V~~v~~~~v~~-------------------- 359 (370)
......+|+|+||++|.|. +++|||++|++.. .++||+|||..|++.+..++..
T Consensus 345 e~s~~t~~YeLvGVlvHSGq-AsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~ 423 (944)
T KOG1866|consen 345 EQSAGTTKYELVGVLVHSGQ-ASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRW 423 (944)
T ss_pred ccccCcceeEEEEEEEeccc-ccCcchhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHh
Confidence 1256889999999999999 9999999999872 4699999999999998765542
Q ss_pred CCcEEEEEEeC
Q 017509 360 DQAYVLFYKQV 370 (370)
Q Consensus 360 ~~~yil~Y~rv 370 (370)
=+||||||+|+
T Consensus 424 WNAYmlFYer~ 434 (944)
T KOG1866|consen 424 WNAYMLFYERM 434 (944)
T ss_pred hhhHHHHHHHh
Confidence 18999999986
No 25
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-46 Score=341.09 Aligned_cols=288 Identities=27% Similarity=0.413 Sum_probs=247.3
Q ss_pred CCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCCChH
Q 017509 17 RGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPS 96 (370)
Q Consensus 17 ~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~p~ 96 (370)
+||.|.|.||||||+||.|+.+..||+.+..++. +.+....+++.+|++++..|+.. ..+++..
T Consensus 194 VGlrNqGATCYmNSLlQslffi~~FRk~Vy~ipT-d~p~grdSValaLQr~Fynlq~~---------------~~PvdTt 257 (1089)
T COG5077 194 VGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPT-DHPRGRDSVALALQRLFYNLQTG---------------EEPVDTT 257 (1089)
T ss_pred eeeccCCceeeHHHHHHHHHHHHHHHHHhhcCCC-CCCCccchHHHHHHHHHHHHhcc---------------CCCcchH
Confidence 8999999999999999999999999999998875 44566677889999999998743 3556665
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCccccc
Q 017509 97 MFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTR 176 (370)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (370)
.+.... .+..+....|+|.+||-..|+|.|+..+....-
T Consensus 258 eltrsf-------gWds~dsf~QHDiqEfnrVl~DnLEksmrgt~V---------------------------------- 296 (1089)
T COG5077 258 ELTRSF-------GWDSDDSFMQHDIQEFNRVLQDNLEKSMRGTVV---------------------------------- 296 (1089)
T ss_pred Hhhhhc-------CcccchHHHHHhHHHHHHHHHHHHHHhhcCChh----------------------------------
Confidence 554332 233346669999999999999999986532110
Q ss_pred cccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecCCCccccCCCcceee
Q 017509 177 TQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTA 255 (370)
Q Consensus 177 ~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~~~c~~c~~~~~~~~ 255 (370)
.+.+..+|-|.+.+-++| .-..++.+.+.||++.|++ ++..+|++.++.|...|+++|.+|..|...+.+.|
T Consensus 297 -----Enaln~ifVgkmksyikCvnvnyEsarvedfwdiqlNv--K~~knLqeSfr~yIqvE~l~GdN~Y~ae~~GlqdA 369 (1089)
T COG5077 297 -----ENALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNV--KGMKNLQESFRRYIQVETLDGDNRYNAEKHGLQDA 369 (1089)
T ss_pred -----hhHHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhcc--cchhhHHHHHHHhhhheeccCCcccccccccchhh
Confidence 123889999999999999 6677788899999999998 78899999999999999999999999999999999
Q ss_pred eEEEeecccCcceEEEEeeEEeC--CCCeeccCcccccCcccccCcccccCCC---CCCccEEEEEEEEeecCCCCCceE
Q 017509 256 KKSVKIQTLSKILILHLMRFSYG--SQGSTKLHKSVRFPLQLVLGRDLLVTPS---AEGRKYELVATVTHHGRDPSKGHY 330 (370)
Q Consensus 256 ~~~~~i~~lP~~L~i~l~R~~~~--~~~~~K~~~~v~~p~~l~l~~~~~~~~~---~~~~~Y~L~~vi~H~G~~~~~GHY 330 (370)
.+-.-|.++|++|.+||+||.++ .+.+.|+++..+||.++|+.+|+..... ...+.|.|+||++|.|. ...|||
T Consensus 370 kKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~ksen~d~vY~LygVlVHsGD-l~~GHy 448 (1089)
T COG5077 370 KKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGD-LHEGHY 448 (1089)
T ss_pred ccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccccccCchhhhhcccCcEEEEEEEEEeccc-cCCceE
Confidence 99999999999999999999988 5568999999999999999999876543 34589999999999999 999999
Q ss_pred EEEEEcC-CCCeEEEeCCcceeeccccccC----------------------CCcEEEEEEe
Q 017509 331 TADARYF-NDQWLHFDDASVTAIGTSKVLH----------------------DQAYVLFYKQ 369 (370)
Q Consensus 331 ~a~vr~~-~~~W~~~nD~~V~~v~~~~v~~----------------------~~~yil~Y~r 369 (370)
+|+++.+ +|+||+|||.+|+++...+|+. .+||||+|-|
T Consensus 449 YallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlR 510 (1089)
T COG5077 449 YALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLR 510 (1089)
T ss_pred EEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeeh
Confidence 9999976 8999999999999999988872 1789999976
No 26
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-44 Score=316.62 Aligned_cols=306 Identities=21% Similarity=0.338 Sum_probs=246.3
Q ss_pred CCCCCCCCCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCCCC---CCchHHHHHHHHhccCCCCCCCCcccc
Q 017509 7 PVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKA---GYPTLTAFVGFVSDFDTPSGGSSKKKN 83 (370)
Q Consensus 7 ~~~~~~~~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~~~---~~~~~~~l~~l~~~~~~~~~~~~~~~~ 83 (370)
+.....|...+||.|+||+||+||++|.|+..-.+...+.......+... ..++.|.+.+|+..|...-.
T Consensus 294 sk~~~~ps~~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~------- 366 (749)
T COG5207 294 SKGESVPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPD------- 366 (749)
T ss_pred hhcccCCCCccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCC-------
Confidence 34445555569999999999999999999998888776654443343333 34455566666655442211
Q ss_pred cccccCCCCCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhh
Q 017509 84 ISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEW 163 (370)
Q Consensus 84 ~~~~~~~~~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (370)
..-.+.|+|.+|...++.-++.| +..+||||+|||.+||+.|.......
T Consensus 367 ---~~y~ngi~p~~fk~~igq~h~eF-----g~~~QQDA~EFLlfLL~kirk~~~S~----------------------- 415 (749)
T COG5207 367 ---NEYVNGISPLDFKMLIGQDHPEF-----GKFAQQDAHEFLLFLLEKIRKGERSY----------------------- 415 (749)
T ss_pred ---ccccCCcChhhHHHHHcCCchhh-----hhhhhhhHHHHHHHHHHHHhhccchh-----------------------
Confidence 13457799999999999999987 88899999999999999998754222
Q ss_pred hhhCCCCCccccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCC-cccCHHHHHHhcCCCceecC
Q 017509 164 ETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSE-AVHTIEDALRLFSAPENLEG 241 (370)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~-~~~sl~~~l~~~~~~e~~~~ 241 (370)
..++|.++|......++.| .|...+.++++...+.+++... ...++.++++.+|.+++++
T Consensus 416 -----------------~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE- 477 (749)
T COG5207 416 -----------------LIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE- 477 (749)
T ss_pred -----------------cCCCcchhhhhhhcceecccccccccccccceEEEEeecccCcchhhHHHHHHheECcccee-
Confidence 1245899999999999999 9999999999998888887532 3578999999999999998
Q ss_pred CCccccCCCcceeeeEEEeecccCcceEEEEeeEEeCCCCeeccCcccccCcc--cccCccccc----------------
Q 017509 242 YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ--LVLGRDLLV---------------- 303 (370)
Q Consensus 242 ~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~p~~--l~l~~~~~~---------------- 303 (370)
+.|+.| +++..+.++.-|++||++|++|..||...+....|+..++.+... +++.+|++.
T Consensus 478 ~~CenC--k~K~~a~~k~~~kslPk~LIlq~~R~~lqny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~ 555 (749)
T COG5207 478 WSCENC--KGKKKASRKPFIKSLPKYLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAF 555 (749)
T ss_pred eehhhh--cCcccccccchhhccCceeEEecceeeccceeehhccCceEEccccccchhhHhhccCCcccccCCcccccc
Confidence 999999 666789999999999999999999999998888999999888775 676655521
Q ss_pred --------------------------------------------------------------------------------
Q 017509 304 -------------------------------------------------------------------------------- 303 (370)
Q Consensus 304 -------------------------------------------------------------------------------- 303 (370)
T Consensus 556 t~Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~ 635 (749)
T COG5207 556 TDNQSLIRQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNP 635 (749)
T ss_pred CchHHHHHHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCH
Confidence
Q ss_pred -----------------------C---------------------CCCCCccEEEEEEEEeecCCCCCceEEEEEEcC-C
Q 017509 304 -----------------------T---------------------PSAEGRKYELVATVTHHGRDPSKGHYTADARYF-N 338 (370)
Q Consensus 304 -----------------------~---------------------~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~-~ 338 (370)
+ .......|.|.|||+|.|++..+|||++|+|+. +
T Consensus 636 n~~Rkal~~~n~d~~r~V~w~~N~~D~tF~EP~v~~eeqqqk~~~~~STa~PYaLtAvI~HkG~s~haGHYv~fIrk~~~ 715 (749)
T COG5207 636 NLCRKALMDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNGK 715 (749)
T ss_pred HHHHHHHHHccCCchheEEEEEeCCCCCCCCCCCCchhhhhcccccccccCcccceeEEeccCCcccccceEEEEecccC
Confidence 0 002345599999999999999999999999985 3
Q ss_pred C--CeEEEeCCcceeeccccccCCCcEEEEEEeC
Q 017509 339 D--QWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 370 (370)
Q Consensus 339 ~--~W~~~nD~~V~~v~~~~v~~~~~yil~Y~rv 370 (370)
| +|+++||+.+..++.-++...+.||+||+|.
T Consensus 716 ~K~kWvl~nDek~v~~~svE~~k~nGYiylf~R~ 749 (749)
T COG5207 716 DKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKRC 749 (749)
T ss_pred cceeEEEEccchheehhhHHHHhhCCeEEEEecC
Confidence 3 7999999999999888888999999999984
No 27
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-42 Score=321.36 Aligned_cols=305 Identities=30% Similarity=0.454 Sum_probs=247.8
Q ss_pred CCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhcc-CCCC-CCCchHHHHHHHHhccCCCCCCCCcccccccccCCC
Q 017509 14 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR-DIPK-AGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGR 91 (370)
Q Consensus 14 ~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~-~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 91 (370)
...+||.|.|+||+||++||.|.+.|..++..+..... .... ...++.+++..++..++.... ..
T Consensus 159 ~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~-------------~~ 225 (492)
T KOG1867|consen 159 LGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHN-------------RT 225 (492)
T ss_pred ecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCC-------------CC
Confidence 34489999999999999999999888888776554332 2223 377899999999999886541 56
Q ss_pred CCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCC
Q 017509 92 PFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNK 171 (370)
Q Consensus 92 ~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (370)
.+.|..+...+.+..+.+ .+.+||||+||+..+++.++.+. ...++.
T Consensus 226 ~~sp~~~l~~~~k~~~~~-----~g~~Qqda~eF~~~~~~~~~~~~-~~~~k~--------------------------- 272 (492)
T KOG1867|consen 226 PYSPFELLNLVWKHSPNL-----AGYEQQDAHEFLIALLDRLHREK-DDCGKS--------------------------- 272 (492)
T ss_pred CcChHHHHHHHHHhCccc-----ccccccchHHHHHHhcccccccc-cccccc---------------------------
Confidence 789999999999998887 67899999999999999998775 000000
Q ss_pred ccccccc-cCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCc--------ccCHHHHHHhcCCCceec-
Q 017509 172 SAVTRTQ-SFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEA--------VHTIEDALRLFSAPENLE- 240 (370)
Q Consensus 172 ~~~~~~~-~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~--------~~sl~~~l~~~~~~e~~~- 240 (370)
...... ..-.+++...|.|.+.+.++| .|+..+.+.++|++|+|+||..- ..++.+++..+...+...
T Consensus 273 -~~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~ 351 (492)
T KOG1867|consen 273 -LIASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGK 351 (492)
T ss_pred -cccccCCcccccccceeecceeccceeehhhcceeeeccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcCc
Confidence 000000 012456889999999999999 88888899999999999998432 245888888777666533
Q ss_pred --CCCccccCCCcceeeeEEEeecccCcceEEEEeeEEeCCCCee-ccCcccccCcccccCccccc----CCCCCCccEE
Q 017509 241 --GYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGST-KLHKSVRFPLQLVLGRDLLV----TPSAEGRKYE 313 (370)
Q Consensus 241 --~~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~-K~~~~v~~p~~l~l~~~~~~----~~~~~~~~Y~ 313 (370)
+..|..| +..+..+++..|.++|.+|.+|++||.+...... |+...|.||..|++.+|+.. ..+.....|+
T Consensus 352 ~~~~~c~~c--~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~ 429 (492)
T KOG1867|consen 352 DSKYKCSSC--KSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYE 429 (492)
T ss_pred ccccccCCc--ccccccccccccccCCceeeeeeccccccccccccccCcccccchhhcCCccccccccccCCCCCceEE
Confidence 4677777 6777899999999999999999999998854444 99999999999999998864 2224589999
Q ss_pred EEEEEEeecCCCCCceEEEEEEcCCCCeEEEeCCcceeeccccccCCCcEEEEEEe
Q 017509 314 LVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 369 (370)
Q Consensus 314 L~~vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~r 369 (370)
|.|||+|+|. .++|||+||.|. .+.|++|||+.|+.++.++|++..||+|||.+
T Consensus 430 L~AVV~H~G~-~~SGHY~aY~r~-~~~~~~~dDs~v~~~s~~eVl~~~aylLFY~~ 483 (492)
T KOG1867|consen 430 LRAVVVHHGT-VGSGHYVAYRRQ-SGGWFKCDDSTVTKVSEEEVLSSQAYLLFYTQ 483 (492)
T ss_pred EEEEEEeccC-CCCCceEEEEEe-CCCcEEEcCeEEEEeeHHHhhhchhhheehhH
Confidence 9999999999 999999999999 66699999999999999999999999999975
No 28
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-42 Score=316.84 Aligned_cols=343 Identities=24% Similarity=0.320 Sum_probs=244.3
Q ss_pred CCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCC-CCCCCchHHHHHHHHhccCCCCCCCCc--ccccccccCCC
Q 017509 15 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDI-PKAGYPTLTAFVGFVSDFDTPSGGSSK--KKNISVLDIGR 91 (370)
Q Consensus 15 ~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~~~~~~~~~~ 91 (370)
.-+||.|+|||||+|||+|.|.++|.+++.+........ -....+....+..|+..+..+.+.... ...........
T Consensus 204 ~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e~~e~~ks 283 (877)
T KOG1873|consen 204 IVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLEMSETTKS 283 (877)
T ss_pred cccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhhhhhccCC
Confidence 348999999999999999999999999999987653320 111222222233333322222110000 00001113457
Q ss_pred CCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCC-CCCCCccccccccccchhhhhhCCCC
Q 017509 92 PFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGES-TSINGANTALVSLAEEDEWETVGPKN 170 (370)
Q Consensus 92 ~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (370)
.+.|..|...+....|+| .++.||||||+|..|||.|..|..+..... ....+.+..-+ -.+.....
T Consensus 284 v~~Pr~lF~~~C~k~pqF-----~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l-------~scle~~q 351 (877)
T KOG1873|consen 284 VITPRTLFGQFCSKAPQF-----RGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSL-------VSCLECGQ 351 (877)
T ss_pred ccCHHHHHHHHHHhCCcc-----cccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccch-------hhhhhccc
Confidence 799999999999999997 899999999999999999976543332211 11111111111 11111112
Q ss_pred CccccccccCCcchhhhccceEEEeEEEecCCCcCeeecCCEEeeeecCCC-----------------------------
Q 017509 171 KSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSE----------------------------- 221 (370)
Q Consensus 171 ~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~c~~~~~~~~~~~~l~l~i~~~----------------------------- 221 (370)
.+.+.+.......++...|.|...+.+.|.-++.+...+.|.+.++++...
T Consensus 352 ~sKvYe~f~~~~~~vp~~~~~~~~s~~~~~~~~vss~~~s~~~~t~pv~~~~~~~qs~~~s~~~~~tsd~sd~spst~~~ 431 (877)
T KOG1873|consen 352 KSKVYEPFKDLSLPVPLSFNGPLTSQIECQACDVSSVHESFLSETLPVLPSQSLSQSSDSSQHLHLTSDSSDTSPSTEAP 431 (877)
T ss_pred hhhcccccccCCcccccccCCCcccchhhhccceeccchhhcccccccccCccccccCCCcccceeccccccCCccccCc
Confidence 333344444445566789999999999994444788888888888887310
Q ss_pred --------------------------------------------------------------------------------
Q 017509 222 -------------------------------------------------------------------------------- 221 (370)
Q Consensus 222 -------------------------------------------------------------------------------- 221 (370)
T Consensus 432 t~n~~~~e~~~~~t~dn~~~~k~qS~~~~~~S~~~~~~~k~~a~s~n~n~~~~g~~~~~a~~v~~~~~~~~p~gD~e~s~ 511 (877)
T KOG1873|consen 432 TKNLPSSELLDSLTDDNDQVFKGQSDVAGTNSKEDQNKAKNQAKSQNLNEASQGKDNEKALQVNDRQLDILPLGDGELSK 511 (877)
T ss_pred ccCcccccccccccccCchhhccccccccCccccccchhhhhhhhhccccccccccchhhhhhchhhccccccCcccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 017509 222 -------------------------------------------------------------------------------- 221 (370)
Q Consensus 222 -------------------------------------------------------------------------------- 221 (370)
T Consensus 512 Ad~~lde~n~~~~sss~~~~~~~~~~~s~v~~~s~~ed~n~~~~~~~~~~~a~~Ss~~~d~~~~~~~v~~S~~s~sp~~s 591 (877)
T KOG1873|consen 512 ADMSLDEANMDEFSSSLEKGIFRGRSTSEVSQASCNEDCNDPEPIQDGSGEASSSSSSVDREHNNHRVARSRFSRSPKKS 591 (877)
T ss_pred cccccccccccccccccCCcccCCccHHHhhhhhhhcccCCcccccCCCCcccCCCcccccccccchhhhhhhcCCCccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 017509 222 -------------------------------------------------------------------------------- 221 (370)
Q Consensus 222 -------------------------------------------------------------------------------- 221 (370)
T Consensus 592 e~~~vs~n~~~~g~~g~~~~Sssf~~g~~~g~~~d~d~~~~e~~~~~~T~~~~~~g~~s~~kvs~~~f~a~~S~s~~~~~ 671 (877)
T KOG1873|consen 592 EVKIVSGNDKTVGDQGETENSSSFNEGDLNGHASDNDEFLIEIPDDKLTRELPVFGPPSKAKVSEQGFDAFSSISDPEVL 671 (877)
T ss_pred ceeeeccccccccccceeeechhhhccCccccccchHHhhhcCcccCCCccccccCCCccceeccCCccccccccChhhc
Confidence
Q ss_pred ----cccCHHHHHHhcCCCceecC---CCccccCC------Ccc-------------------eeeeEEEeecccCcceE
Q 017509 222 ----AVHTIEDALRLFSAPENLEG---YRTSSTGN------AGV-------------------VTAKKSVKIQTLSKILI 269 (370)
Q Consensus 222 ----~~~sl~~~l~~~~~~e~~~~---~~c~~c~~------~~~-------------------~~~~~~~~i~~lP~~L~ 269 (370)
+..+++.||.+|.+.|.+.| +.|+.|.+ ..+ ..+.+...|..+|++|+
T Consensus 672 ~~~D~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVlt 751 (877)
T KOG1873|consen 672 DSSDEPCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLT 751 (877)
T ss_pred cCCCCCccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceee
Confidence 24689999999999999987 67887743 100 01456778999999999
Q ss_pred EEEeeEEeC-CCCeeccCcccccCcccccCcccccCC----CCCCccEEEEEEEEeecCCCCCceEEEEEEc--------
Q 017509 270 LHLMRFSYG-SQGSTKLHKSVRFPLQLVLGRDLLVTP----SAEGRKYELVATVTHHGRDPSKGHYTADARY-------- 336 (370)
Q Consensus 270 i~l~R~~~~-~~~~~K~~~~v~~p~~l~l~~~~~~~~----~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~-------- 336 (370)
|||+||..+ .++..|.+.++.|++.+|+..|+...- ......|+|.|+|.|.|. ++.|||++|+|.
T Consensus 752 ihlKrf~q~~~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgt-m~~ghyvayv~~~t~~~~~~ 830 (877)
T KOG1873|consen 752 IHLKRFFQDIRGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGT-MSYGHYVAYVRGGTFLDLSA 830 (877)
T ss_pred ehHhhhhhhhhchhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceecccc-ccCCcchhhhhccchhhccC
Confidence 999999988 445899999999999999988764422 235678999999999999 999999999984
Q ss_pred -------------CCCCeEEEeCCcceeeccccccCCCcEEEEEEeC
Q 017509 337 -------------FNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 370 (370)
Q Consensus 337 -------------~~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~rv 370 (370)
+.|+||...|++|+++++++|+..+||||||+||
T Consensus 831 ~~~~~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 831 PSNSKDFESDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred ccccccchhccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 2479999999999999999999999999999998
No 29
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-38 Score=276.97 Aligned_cols=235 Identities=18% Similarity=0.152 Sum_probs=190.9
Q ss_pred CCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCCCh
Q 017509 16 PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSP 95 (370)
Q Consensus 16 p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~p 95 (370)
-+||.|.|.|||+||+||+|+.+|+||+.+.. ....+....|+.++|+.|+..+
T Consensus 15 ~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~--~~~~~~~~~~l~~el~~lfs~~------------------------ 68 (268)
T cd02672 15 YAGLENHITNSYCNSLLQLLYFIPPFRNFTAI--ILVACPKESCLLCELGYLFSTL------------------------ 68 (268)
T ss_pred ccccccCCccchHHHHHHHHHhcHHHHHHHHh--hcccCCcCccHHHHHHHHHHHH------------------------
Confidence 48999999999999999999999999998432 2345677899999999998211
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCcccc
Q 017509 96 SMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVT 175 (370)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (370)
. +-|-.+|++.+..+...
T Consensus 69 ---i-----------------------q~F~~fll~~i~~~~~~------------------------------------ 86 (268)
T cd02672 69 ---I-----------------------QNFTRFLLETISQDQLG------------------------------------ 86 (268)
T ss_pred ---H-----------------------HHHHHHHHHHHHHHhcc------------------------------------
Confidence 1 23556777777755310
Q ss_pred ccccCCcchhhhccceEEEeEEEecCCCcCeeecCCEEeeeecCCC---cccCHHHHHHhcCCCceecCCCccccCCCcc
Q 017509 176 RTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSE---AVHTIEDALRLFSAPENLEGYRTSSTGNAGV 252 (370)
Q Consensus 176 ~~~~~~~~~i~~~F~~~~~~~~~C~c~~~~~~~~~~~~l~l~i~~~---~~~sl~~~l~~~~~~e~~~~~~c~~c~~~~~ 252 (370)
.+ ..|+..+.+.+++..|+|++|.. ...+|.++|+.++..|...++.|+.| +.+
T Consensus 87 ------------~~---------~~C~~~s~~~~~~~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~~~~~C~~C--~~~ 143 (268)
T cd02672 87 ------------TP---------FSCGTSRNSVSLLYTLSLPLGSTKTSKESTFLQLLKRSLDLEKVTKAWCDTC--CKY 143 (268)
T ss_pred ------------cC---------CCCCceeeccccceeeeeecCccccccCCCHHHHHHHHhhhhhccccccccc--Ccc
Confidence 00 35778899999999999999954 35799999999999998888889999 566
Q ss_pred eeeeEEEeecccCc----ceEEEEeeEEeCC-------CCeeccCcccccCcccccCcccccCCCCCCccEEEEEEEEee
Q 017509 253 VTAKKSVKIQTLSK----ILILHLMRFSYGS-------QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHH 321 (370)
Q Consensus 253 ~~~~~~~~i~~lP~----~L~i~l~R~~~~~-------~~~~K~~~~v~~p~~l~l~~~~~~~~~~~~~~Y~L~~vi~H~ 321 (370)
+.+.++.+|.++|+ +|+||++||.... ....|+...|.+|..+++..... ........|+|+|||+|.
T Consensus 144 ~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~-~~~~~~~~Y~L~gvV~hi 222 (268)
T cd02672 144 QPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKN-RGQESIYKYELVGYVCEI 222 (268)
T ss_pred cccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecccccccchhhhc-cCCCCCceEEEEEEEEEe
Confidence 78999999999999 9999999999653 23467888999998876654332 223456789999999999
Q ss_pred cCCCCCceEEEEEEcC-----CCCeEEEeCCcceeeccccccCCCcEEEEEE
Q 017509 322 GRDPSKGHYTADARYF-----NDQWLHFDDASVTAIGTSKVLHDQAYVLFYK 368 (370)
Q Consensus 322 G~~~~~GHY~a~vr~~-----~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~ 368 (370)
|.+..+|||+|++|.. +++||+|||..|++|+. .||||||+
T Consensus 223 g~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~------~aYiLfY~ 268 (268)
T cd02672 223 NDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE------LAYILLYQ 268 (268)
T ss_pred cCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc------hheeeecC
Confidence 9866999999999985 47899999999999988 79999995
No 30
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-40 Score=324.17 Aligned_cols=318 Identities=29% Similarity=0.498 Sum_probs=274.8
Q ss_pred CCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccC------CCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCC
Q 017509 17 RGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD------IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIG 90 (370)
Q Consensus 17 ~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 90 (370)
+||.|+||||||||.+|+|.+.+.++.++....... .-.....+...+..++..++... .
T Consensus 247 ~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~--------------~ 312 (842)
T KOG1870|consen 247 TGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGN--------------K 312 (842)
T ss_pred cccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCC--------------c
Confidence 999999999999999999999999999886543322 22445667888888988887543 2
Q ss_pred CCCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCC-CCCCCccccccccccchhhhhhCCC
Q 017509 91 RPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGES-TSINGANTALVSLAEEDEWETVGPK 169 (370)
Q Consensus 91 ~~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (370)
.+++|..++..+....+.| .+..|+|.+||+.+++|.+|+.+.+...++ ..........+...+...|......
T Consensus 313 ~~v~~~~~~~~~~~~a~~~-----~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~ 387 (842)
T KOG1870|consen 313 SAVAPTSFRTSLASFASEF-----SGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKR 387 (842)
T ss_pred cccCchhhhhhhhhccccc-----cCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhh
Confidence 3699999999999998876 888999999999999999999998887762 2223333335556677788888888
Q ss_pred CCccccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCC---------------------------
Q 017509 170 NKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSE--------------------------- 221 (370)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~--------------------------- 221 (370)
+.+. +.++|.|.+.+.+.| .|...+.++++|..|++++|.+
T Consensus 388 ~~s~-----------i~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 456 (842)
T KOG1870|consen 388 NRSV-----------IVDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPGKEIQKLEVTVPHGDGFRKPGALGVSVAK 456 (842)
T ss_pred ccce-----------eeeeecceecccccCccCCCceEEeeccccccccCCCCcccceeEEEecCCCCCChhheeeeccc
Confidence 8875 899999999999999 8999999999999999999810
Q ss_pred --------------------------------------------------------------------------------
Q 017509 222 -------------------------------------------------------------------------------- 221 (370)
Q Consensus 222 -------------------------------------------------------------------------------- 221 (370)
T Consensus 457 ~~~~~~l~~~l~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 536 (842)
T KOG1870|consen 457 NGRIRDLLEYLSRTVGLLSWELKPVEILFDCFNKIFAADELKLDSIYSDEELFDYELGVLKVQGSIYAIIVVRFRSRLPR 536 (842)
T ss_pred cchHHHHHHHHHHHhccchhhcccceeccchhhhhhccCccccccccCCcceEEeecccccccccceEEEEEeecccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 017509 222 -------------------------------------------------------------------------------- 221 (370)
Q Consensus 222 -------------------------------------------------------------------------------- 221 (370)
T Consensus 537 ~~~~~~~~~~~~~g~p~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~~~~~ 616 (842)
T KOG1870|consen 537 SKGIRSHVSSKLFGLPLLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSRDPSE 616 (842)
T ss_pred ccCcccCCCccccCCcceeeccCCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccCCChh
Confidence
Q ss_pred -----------------------------------------------------------------------------ccc
Q 017509 222 -----------------------------------------------------------------------------AVH 224 (370)
Q Consensus 222 -----------------------------------------------------------------------------~~~ 224 (370)
...
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (842)
T KOG1870|consen 617 DDNSDQDLSLECLSEESALRFFQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGSPAPN 696 (842)
T ss_pred HhccccccchhhccCcccccccccccccccccccccCCCceeecccChhhccccccccccccccccccccccccCCCCcc
Confidence 257
Q ss_pred CHHHHHHhcCCCceecC---CCccccCCCcceeeeEEEeecccCcceEEEEeeEEeCCCCeeccCcccccCcc-cccCcc
Q 017509 225 TIEDALRLFSAPENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRD 300 (370)
Q Consensus 225 sl~~~l~~~~~~e~~~~---~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~p~~-l~l~~~ 300 (370)
+|++||+.|+.+|.+.. +.|+.| +.++.|.++..++++|++|+|||+||++.+....|+.+.|+||.. ||+++|
T Consensus 697 sL~~cl~~F~~~E~L~~~~~w~C~~C--ke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~ 774 (842)
T KOG1870|consen 697 SLESCLELFSEPETLGKDDRWYCPQC--KELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEF 774 (842)
T ss_pred cHHHHHHhhcchhcCCccccccChHH--HHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchh
Confidence 99999999999999874 788888 777899999999999999999999999998888999999999988 999998
Q ss_pred cccCCCCCCccEEEEEEEEeecCCCCCceEEEEEEc-CCCCeEEEeCCcceeeccccccCCCcEEEEEEeC
Q 017509 301 LLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARY-FNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 370 (370)
Q Consensus 301 ~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~-~~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~rv 370 (370)
+...+. ..|+|+||++|.|. +.+|||+||.|. ++++||.|||+.|.+++++++..+.||+|||+|.
T Consensus 775 ~~~~~~---~~Y~l~av~nHyG~-l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~ 841 (842)
T KOG1870|consen 775 VVNKEQ---VLYDLYAVGNHYGQ-LSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRL 841 (842)
T ss_pred hccCcc---ceeeeeeeecccCC-cCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEec
Confidence 865433 99999999999999 999999999999 4889999999999999999999999999999984
No 31
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-38 Score=268.40 Aligned_cols=353 Identities=34% Similarity=0.521 Sum_probs=273.7
Q ss_pred CCCCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCC--CCCCCchHHHHHHHHhccCCCCCCCCcc--------
Q 017509 12 KDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDI--PKAGYPTLTAFVGFVSDFDTPSGGSSKK-------- 81 (370)
Q Consensus 12 ~~~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~-------- 81 (370)
.|..|+|+.|-||-|||||+||+|+.|++|.+.+........ .....+++.++..+.+++..........
T Consensus 24 ~~i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~ 103 (420)
T KOG1871|consen 24 VPIDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPE 103 (420)
T ss_pred cccCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCccc
Confidence 348899999999999999999999999999998876652221 1446678888888888877443321110
Q ss_pred ------cccccccCCCCCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCc-----
Q 017509 82 ------KNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGA----- 150 (370)
Q Consensus 82 ------~~~~~~~~~~~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~----- 150 (370)
.......++.++.|..+.-.+... +.| .....|.|+||.||+..++|.|++++.+......+....
T Consensus 104 ~~~~~ses~~~d~~~dav~~d~~~~~l~t~-~~~--e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~ 180 (420)
T KOG1871|consen 104 HVVEKSESNKSDLQGDAVKPDPIYLDLLTM-SRF--ESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRG 180 (420)
T ss_pred cccchhhhhhhcccCccccCCchhhhcccC-Cch--hhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccc
Confidence 011222344445555443333221 111 223778999999999999999999998766643222111
Q ss_pred -----------cccccccccchhhhhhCCCCCccccccccCCcchhhhccceEEEeEEEecCCCcCeeecCCEEeeeecC
Q 017509 151 -----------NTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIY 219 (370)
Q Consensus 151 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~c~~~~~~~~~~~~l~l~i~ 219 (370)
........++..|...++.++..+.|......+||+++|+|++.+...-...+++.+.+||..+.|+|.
T Consensus 181 ~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~nkeS~tlqPF~tlqldiq 260 (420)
T KOG1871|consen 181 LINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSNKESATLQPFFTLQLDIQ 260 (420)
T ss_pred cccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccccccccccCccceeeeeee
Confidence 111122334566777888888888898899999999999999999888877777899999999999999
Q ss_pred CCcccCHHHHHHhcCCCceecCCCccccCCCcceeeeEEEeecccCcceEEEEeeEEeC-CCCeeccCcccccCcccccC
Q 017509 220 SEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG-SQGSTKLHKSVRFPLQLVLG 298 (370)
Q Consensus 220 ~~~~~sl~~~l~~~~~~e~~~~~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~-~~~~~K~~~~v~~p~~l~l~ 298 (370)
.....+++++++.+...|.+.++.-.. +..+.+.+...+.++|.+|++|++||.+. .++..|+.+++++|-.+.+.
T Consensus 261 ~~~i~sv~~ales~~~re~lp~~st~s---~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~ 337 (420)
T KOG1871|consen 261 SEKIHSVQDALESLVARESLPGYSTKS---GQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKIS 337 (420)
T ss_pred ccccCCHHHHhhccChhhcccceecCC---CCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccceeeec
Confidence 888999999999999999998776652 55667888899999999999999999988 77889999999999999887
Q ss_pred cccccCC-----CCCCccEEEEEEEEeecCCCCCceEEEEEEcC-CCCeEEEeCCcceeeccccccC----CCcEEEEEE
Q 017509 299 RDLLVTP-----SAEGRKYELVATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLH----DQAYVLFYK 368 (370)
Q Consensus 299 ~~~~~~~-----~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~v~~----~~~yil~Y~ 368 (370)
..+.... ......|+|.+++.|+|.++..|||..-+.+. -+.|+.+||..|..+..++|.. .+||+|+|.
T Consensus 338 ~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~ 417 (420)
T KOG1871|consen 338 KNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYI 417 (420)
T ss_pred hhhhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEee
Confidence 7654321 24567899999999999999999999999885 4569999999999999999985 499999998
Q ss_pred eC
Q 017509 369 QV 370 (370)
Q Consensus 369 rv 370 (370)
|.
T Consensus 418 ~~ 419 (420)
T KOG1871|consen 418 EA 419 (420)
T ss_pred ec
Confidence 73
No 32
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-38 Score=321.35 Aligned_cols=299 Identities=27% Similarity=0.429 Sum_probs=250.5
Q ss_pred CCCCCCCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhc-cCCCCCCCchHHHHHHHHhccCCCCCCCCcccccccc
Q 017509 9 KSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRT-RDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 87 (370)
Q Consensus 9 ~~~~~~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 87 (370)
+.-.+..|+||.|.|+|||+||+||.|+.+|.||+.+.+.+. .........+..+|+.+|..|+...
T Consensus 163 ~k~~tg~~vGL~N~GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~------------ 230 (1093)
T KOG1863|consen 163 SKRLTGFPVGLKNLGATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSK------------ 230 (1093)
T ss_pred hhhcCCCCccccCCCceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcC------------
Confidence 345677889999999999999999999999999999999873 2233344558889999999987543
Q ss_pred cCCCCCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhC
Q 017509 88 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVG 167 (370)
Q Consensus 88 ~~~~~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (370)
.+.+++..+...+.... ...+.|||++||...|++.|+..+.....
T Consensus 231 --~k~Vdt~~~~~~~~~~~-------~~~~~QqDvqEf~~~l~d~LE~~~~~~~~------------------------- 276 (1093)
T KOG1863|consen 231 --RKYVDTSELTKSLGWDS-------NDSFEQQDVQEFLTKLLDWLEDSMIDAKV------------------------- 276 (1093)
T ss_pred --CCCcCchhhhhhhhccc-------ccHHhhhhHHHHHHHHHHHHHhhccchhh-------------------------
Confidence 45788888888877653 14569999999999999999988743321
Q ss_pred CCCCccccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecCCCccc
Q 017509 168 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSS 246 (370)
Q Consensus 168 ~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~~~c~~ 246 (370)
.+.+.++|.|...+.+.| .|...+...+.|+++.+++ .+..+|.++|..|+..|.++|....+
T Consensus 277 --------------~~~l~~lf~g~~~~~i~c~~~~~~s~r~e~f~d~ql~~--~g~~nl~~sf~~y~~~E~l~gdn~~~ 340 (1093)
T KOG1863|consen 277 --------------ENTLQDLFTGKMKSVIKCIDVDFESSRSESFLDLQLNG--KGVKNLEDSLHLYFEAEILLGDNKYD 340 (1093)
T ss_pred --------------hhhhhhhhcCCcceEEEEEeeeeeccccccccCccccc--cchhhHHHHHHHhhhHHHhcCCcccc
Confidence 123889999999999999 7778888999999999998 66678999999999999999987766
Q ss_pred cCCCcceeeeEEEeecccCcceEEEEeeEEeC--CCCeeccCcccccCcccccCccccc--CCC-CCCccEEEEEEEEee
Q 017509 247 TGNAGVVTAKKSVKIQTLSKILILHLMRFSYG--SQGSTKLHKSVRFPLQLVLGRDLLV--TPS-AEGRKYELVATVTHH 321 (370)
Q Consensus 247 c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~--~~~~~K~~~~v~~p~~l~l~~~~~~--~~~-~~~~~Y~L~~vi~H~ 321 (370)
+++.+.+.+.+...+.+||++|.|+|.||.++ .+...|+.+...||..|++.+|+.. ... ...+.|.|+||++|.
T Consensus 341 ~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~ 420 (1093)
T KOG1863|consen 341 AECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHS 420 (1093)
T ss_pred ccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccchhccccchhhhhccceeccchhhccc
Confidence 67788889999999999999999999999997 6678999999999999999999763 222 233599999999996
Q ss_pred cCCCCCceEEEEEEcC-CCCeEEEeCCcceeeccccccCC----------------CcEEEEEEeC
Q 017509 322 GRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLHD----------------QAYVLFYKQV 370 (370)
Q Consensus 322 G~~~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~v~~~----------------~~yil~Y~rv 370 (370)
|. ..+|||++|++.. .++|++|||..|+.++..+++.. .||+|+|-|.
T Consensus 421 g~-~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~ 485 (1093)
T KOG1863|consen 421 GD-AHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRD 485 (1093)
T ss_pred cc-ccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEec
Confidence 66 9999999999975 78999999999999997766521 3899999874
No 33
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=100.00 E-value=1.1e-36 Score=271.51 Aligned_cols=284 Identities=21% Similarity=0.221 Sum_probs=234.2
Q ss_pred CCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCCChH
Q 017509 17 RGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPS 96 (370)
Q Consensus 17 ~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~p~ 96 (370)
.||.|.+++||+||+||+|+++|++|+.++... .+....|+.|+|+-|+.+|... ..+....+.
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~---~c~~e~cL~cELgfLf~ml~~~-------------~~g~~cq~s 64 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL---ECPKEFCLLCELGFLFDMLDSK-------------AKGINCQAS 64 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc---CCCccccHHHHHHHHHHHhhhh-------------cCCCcChHH
Confidence 599999999999999999999999999998855 3777899999999999999722 346668888
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCccccc
Q 017509 97 MFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTR 176 (370)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (370)
.|..+++.....- ..+.|+|+++|+.+|++.|+.++.......... ...
T Consensus 65 Nflr~l~~~~~a~-----~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~--------------------------~~~ 113 (295)
T PF13423_consen 65 NFLRALSWIPEAA-----ALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHT--------------------------SEN 113 (295)
T ss_pred HHHHHHhcCHHHH-----hcchhHHHHHHHHHHHHHHhHHHHhcCcccccc--------------------------ccc
Confidence 9999998874322 345799999999999999999986655311000 000
Q ss_pred cccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCC-cccCHHHHHHhcCCCceecCCCccccCCCccee
Q 017509 177 TQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSE-AVHTIEDALRLFSAPENLEGYRTSSTGNAGVVT 254 (370)
Q Consensus 177 ~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~-~~~sl~~~l~~~~~~e~~~~~~c~~c~~~~~~~ 254 (370)
......++|.++|+......++| .|+.+..+.+....+.+..|.. ...++.++|+.++..+......|+.|+. ...
T Consensus 114 ~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~~~a~C~~C~~--~~~ 191 (295)
T PF13423_consen 114 SSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLPYPPSNSNVTFSQVLEHSLNREQQTRAWCEKCNK--YQP 191 (295)
T ss_pred ccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeeccCCCCCccchHHHHHHHHHhhccccccccccccc--ccc
Confidence 00112245999999999999999 9999999999888888888763 4679999999999999998899999954 457
Q ss_pred eeEEEeecccCcceEEEEeeEEeCCCCeeccCcccccCcccccCcccccCC------CCCCccEEEEEEEEeecCCCCCc
Q 017509 255 AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTP------SAEGRKYELVATVTHHGRDPSKG 328 (370)
Q Consensus 255 ~~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~p~~l~l~~~~~~~~------~~~~~~Y~L~~vi~H~G~~~~~G 328 (370)
...+.+|.++|++|.|.++|...+.....|....+.+|..+++..++..+. .....+|+|.|+|+|.|.+..+|
T Consensus 192 ~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~ 271 (295)
T PF13423_consen 192 TEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPPSINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESG 271 (295)
T ss_pred eeeeeeccCCCcEEEEEccCCCcccccccccCCceecceeeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCC
Confidence 888888999999999999999988555788899999999999988765442 56788999999999999999999
Q ss_pred eEEEEEEcC---CCCeEEEeCCcc
Q 017509 329 HYTADARYF---NDQWLHFDDASV 349 (370)
Q Consensus 329 HY~a~vr~~---~~~W~~~nD~~V 349 (370)
||||+||.+ +++||+|||..|
T Consensus 272 HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 272 HLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred ceEEEEEcCCCCCCcEEEECcEeC
Confidence 999999996 368999999765
No 34
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.2e-37 Score=259.83 Aligned_cols=135 Identities=25% Similarity=0.391 Sum_probs=112.8
Q ss_pred EEeeeecCC---CcccCHHHHHHhcCCCceecCCCccccCCCcceeeeEEEeecccCcceEEEEeeEEeCCCCeeccCcc
Q 017509 212 LLLHLDIYS---EAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKS 288 (370)
Q Consensus 212 ~~l~l~i~~---~~~~sl~~~l~~~~~~e~~~~~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~ 288 (370)
..++|+||. .+..+|++||+.|+..|. |.++|++|+|||+||.++.+...|+.+.
T Consensus 65 ~~l~l~ip~~~~~~~~tLedcLe~~~~~e~----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~ 122 (241)
T cd02670 65 RLLQIPVPDDDDGGGITLEQCLEQYFNNSV----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKK 122 (241)
T ss_pred ceEEeecccCCCCCcCCHHHHHHHHhchhh----------------------hhhCCCeEEEEEEccccCCCcceeCCcE
Confidence 344555543 257899999999998775 8899999999999999988667999999
Q ss_pred cccCcccccCcccccCC---------------------CCCCccEEEEEEEEeecCCCCCceEEEEEEcCC---------
Q 017509 289 VRFPLQLVLGRDLLVTP---------------------SAEGRKYELVATVTHHGRDPSKGHYTADARYFN--------- 338 (370)
Q Consensus 289 v~~p~~l~l~~~~~~~~---------------------~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~~--------- 338 (370)
|.||..|||.+|+.... ......|+|+|||+|.|.+..+|||+||+|...
T Consensus 123 I~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~ 202 (241)
T cd02670 123 ILIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNE 202 (241)
T ss_pred ECCCCcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccC
Confidence 99999999999875431 234578999999999998899999999999963
Q ss_pred ---CCeEEEeCCcceeeccc------cccCCCcEEEEEE
Q 017509 339 ---DQWLHFDDASVTAIGTS------KVLHDQAYVLFYK 368 (370)
Q Consensus 339 ---~~W~~~nD~~V~~v~~~------~v~~~~~yil~Y~ 368 (370)
+.|++|||..|+.+... .+..+.||||||+
T Consensus 203 ~~~~~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 203 AYNAQWVFFDDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred CCCCeEEEecCcccccccccccccchhcccCCceEEEeC
Confidence 78999999998876532 4567899999996
No 35
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-38 Score=287.11 Aligned_cols=265 Identities=22% Similarity=0.361 Sum_probs=217.7
Q ss_pred CCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCCChH
Q 017509 17 RGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPS 96 (370)
Q Consensus 17 ~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~p~ 96 (370)
+||.|..-+||+|+.+|+|+-.|+|++.+.-.+. .++...
T Consensus 88 vglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~~----------------------------------------~~~et~ 127 (1203)
T KOG4598|consen 88 VGLVNQASNDLLFEQSCAISLHDSGISKCYTSEN----------------------------------------DSLETK 127 (1203)
T ss_pred EeehhhHHHHHHHHHhhhhccChhhhhhhhCCCc----------------------------------------ccccch
Confidence 8999999999999999999999999998863211 111111
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCccccc
Q 017509 97 MFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTR 176 (370)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (370)
.+-+. |.+......+|+|.+|+-..++|+|+-..+....
T Consensus 128 dlt~s-------fgw~s~ea~~qhdiqelcr~mfdalehk~k~t~~---------------------------------- 166 (1203)
T KOG4598|consen 128 DLTQS-------FGWTSNEAYDQHDVQELCRLMFDALEHKWKGTEH---------------------------------- 166 (1203)
T ss_pred hhHhh-------cCCCcchhhhhhhHHHHHHHHHHHHHhhhcCchH----------------------------------
Confidence 11111 1111125569999999999999999876532211
Q ss_pred cccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCc----ccCHHHHHHhcCCCceecC---CCccccC
Q 017509 177 TQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEA----VHTIEDALRLFSAPENLEG---YRTSSTG 248 (370)
Q Consensus 177 ~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~----~~sl~~~l~~~~~~e~~~~---~~c~~c~ 248 (370)
.+.|.+++.|....-+.| .|+.++.+.+.|.+|.|++.+=+ -.+++++|..|..+|.++| |.|++|
T Consensus 167 -----~~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~c- 240 (1203)
T KOG4598|consen 167 -----EKLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVKPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENC- 240 (1203)
T ss_pred -----HHHHHHHhcchHHHHHHHHHcCccccccceeecccccccCCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhh-
Confidence 135999999999999999 99999999999999999986544 3689999999999999998 778888
Q ss_pred CCcceeeeEEEeecccCcceEEEEeeEEeC--CCCeeccCcccccCcccccCcccccC----------------------
Q 017509 249 NAGVVTAKKSVKIQTLSKILILHLMRFSYG--SQGSTKLHKSVRFPLQLVLGRDLLVT---------------------- 304 (370)
Q Consensus 249 ~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~--~~~~~K~~~~v~~p~~l~l~~~~~~~---------------------- 304 (370)
++++.+.+-.+|..+|=+|.|||+||.++ ..-..|++++|.||..|||..|+...
T Consensus 241 -k~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~ 319 (1203)
T KOG4598|consen 241 -KSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEED 319 (1203)
T ss_pred -hhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHHhhhhccCCcchhHhhhccccccccccc
Confidence 77779999999999999999999999988 44468999999999999998776220
Q ss_pred -------------------------------------------CCCCCccEEEEEEEEeecCCCCCceEEEEEEcC-CCC
Q 017509 305 -------------------------------------------PSAEGRKYELVATVTHHGRDPSKGHYTADARYF-NDQ 340 (370)
Q Consensus 305 -------------------------------------------~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~-~~~ 340 (370)
...+...|+|.+|++|.|+ +.+|||+||+++- ++.
T Consensus 320 ~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg~-a~gghy~ayik~~d~~~ 398 (1203)
T KOG4598|consen 320 DMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSGN-AAGGHYFAYIKNLDQDR 398 (1203)
T ss_pred ccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecCC-CCCceeeeeecccCcCc
Confidence 1146788999999999999 9999999999996 678
Q ss_pred eEEEeCCcceeeccccccC-------------CCcEEEEEEeC
Q 017509 341 WLHFDDASVTAIGTSKVLH-------------DQAYVLFYKQV 370 (370)
Q Consensus 341 W~~~nD~~V~~v~~~~v~~-------------~~~yil~Y~rv 370 (370)
||+|||.+|+.+.++++.. .+||||.|+||
T Consensus 399 w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~i 441 (1203)
T KOG4598|consen 399 WYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRI 441 (1203)
T ss_pred eEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhhc
Confidence 9999999999999988862 49999999987
No 36
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-33 Score=264.82 Aligned_cols=326 Identities=28% Similarity=0.413 Sum_probs=238.7
Q ss_pred CCcccCCchhhHH--HHHHHHhCCHHHHHHHHhhhccCCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCCC
Q 017509 17 RGLINSGNLCFLN--ATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFS 94 (370)
Q Consensus 17 ~GL~N~gntCy~N--s~lQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 94 (370)
-|..|.+++|+.| ++.+.++.+-.++.......... ..........+..+...+...... ......+.
T Consensus 233 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~i~ 302 (587)
T KOG1864|consen 233 FGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSL-KRSYIIKEELLTCLLDLFSSISSR---------KKLVGRIS 302 (587)
T ss_pred cCccccCccccccchhhHHHHHhhhhhcccccchhhcc-cchhhhhHHHHHHhhhhccchhhh---------cccccccC
Confidence 6788999999999 99999999998886543322111 110001111122222222222111 12345588
Q ss_pred hHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccc-cccccccchhhhhhCCCCCcc
Q 017509 95 PSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANT-ALVSLAEEDEWETVGPKNKSA 173 (370)
Q Consensus 95 p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 173 (370)
|..++..+.+....| ..+.|||||||+..+++.+++................. ..........|..-+
T Consensus 303 p~~~~~~~~~~~~~f-----~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~------ 371 (587)
T KOG1864|consen 303 PTRFISDLIKENELF-----TNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKG------ 371 (587)
T ss_pred cchhhhhhhhcCCcc-----CchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccc------
Confidence 999999999987776 88899999999999999999887655432211111100 000000111111111
Q ss_pred ccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecC---CCccccCC
Q 017509 174 VTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGN 249 (370)
Q Consensus 174 ~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~---~~c~~c~~ 249 (370)
.......++++.+|.|.+....+| .|...+...+.|.+++++++.....++..+|+.+...|.+.| +.|..|
T Consensus 372 --~~~~~~~~~v~~lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c-- 447 (587)
T KOG1864|consen 372 --HHKSLRENWVSKLFQGILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENC-- 447 (587)
T ss_pred --cccccchhHHHHhhcCeeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCCccccccc--
Confidence 122334568999999999999999 999999999999999999987788999999999999999988 556666
Q ss_pred CcceeeeEEEeecccCcceEEEEeeEEeCC--CCeeccCcccccCcccccCcccccCCCCCCccEEEEEEEEeecCCCCC
Q 017509 250 AGVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSK 327 (370)
Q Consensus 250 ~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~--~~~~K~~~~v~~p~~l~l~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~ 327 (370)
.+.+.+.+...+..+|.+|+|||+||.+.. .+..|+...|.+|..+.+....... ......|.|+|||||.|.+.+.
T Consensus 448 ~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~-~~~~~~Y~L~avVvH~G~~p~~ 526 (587)
T KOG1864|consen 448 CSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDD-NNPDRKYDLVAVVVHLGSTPNR 526 (587)
T ss_pred CchhhHHHhccccCCcceeeeehhccccccccccccccccccccccceeeccccccc-cCccceeeEEEEEEeccCCCCC
Confidence 778899999999999999999999999884 3358999999999999998654221 1224799999999999999999
Q ss_pred ceEEEEEEcCCCCeEEEeCCcceeeccccccC---CCcEEEEEE
Q 017509 328 GHYTADARYFNDQWLHFDDASVTAIGTSKVLH---DQAYVLFYK 368 (370)
Q Consensus 328 GHY~a~vr~~~~~W~~~nD~~V~~v~~~~v~~---~~~yil~Y~ 368 (370)
|||+||+|..+-.|++|||+.|+.++.++|.. ..+|+++|.
T Consensus 527 GHYia~~r~~~~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~ 570 (587)
T KOG1864|consen 527 GHYVAYVKSLDFNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYY 570 (587)
T ss_pred cceEEEEeeCCCCceecccccccccCcchhhhccCCCccceeee
Confidence 99999999964449999999999999998874 377777765
No 37
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.8e-32 Score=239.75 Aligned_cols=301 Identities=23% Similarity=0.275 Sum_probs=218.9
Q ss_pred CCCCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCC----CCCCchHHHHHHHHhccCCCCCCCCcccccccc
Q 017509 12 KDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIP----KAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 87 (370)
Q Consensus 12 ~~~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~----~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 87 (370)
.-..|+|+.|.|||||||+.+|+|...|+++..+.......-. .....+..++..+|+.|.
T Consensus 101 ~~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~--------------- 165 (473)
T KOG1872|consen 101 ALPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLC--------------- 165 (473)
T ss_pred hccCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhh---------------
Confidence 4567899999999999999999999999999887654311111 112345566677777664
Q ss_pred cCCCCCChHHHHHHHhhcCCCCCC-CCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhh
Q 017509 88 DIGRPFSPSMFEAVLKNFTPDVPN-SISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETV 166 (370)
Q Consensus 88 ~~~~~i~p~~~~~~l~~~~~~~~~-~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (370)
...++.|..+.+.+++..|.|.. ...+...||||.|++..++.-+++.+......+
T Consensus 166 -~~~~v~pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~---------------------- 222 (473)
T KOG1872|consen 166 -EKGAVAPINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP---------------------- 222 (473)
T ss_pred -ccCCcchHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc----------------------
Confidence 22779999999999999998854 234667899999999999999987763322100
Q ss_pred CCCCCccccccccCCcchhhhccceEEEeEEEe-cCCCcCee--ecCCEEeeeecCCCcccCHHHHHHhcCCCceecCCC
Q 017509 167 GPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASAT--VQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYR 243 (370)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~--~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~~~ 243 (370)
.....+...|..++..+..| ........ .+.+..|..-+. .....+...|..-++.+..- .
T Consensus 223 -------------~~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i~-~~~~~~k~Gl~~~~~e~~~K--~ 286 (473)
T KOG1872|consen 223 -------------CLEAEAAAGFGAEFSTTMSCSEGEDEGGGAGRELVDQLKCIIN-KTVHDMRFGLKSGLSEEIQK--I 286 (473)
T ss_pred -------------chhHHHHHhhccccccceeeccCcccccccccccccccceEEe-eeechhhhhhhhhhhhhhhc--c
Confidence 01124788899999889999 44333332 677777777765 44455666665544333211 1
Q ss_pred ccccCCCcceeeeEEEeecccCcceEEEEeeEEeCC--CCeeccCcccccCcccccCccccc------------------
Q 017509 244 TSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLV------------------ 303 (370)
Q Consensus 244 c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~--~~~~K~~~~v~~p~~l~l~~~~~~------------------ 303 (370)
.+.-+... ...+...|.+||++|+|+..||.+.. +...|+-+.|.||..||....+..
T Consensus 287 s~~lgr~a--~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~ed 364 (473)
T KOG1872|consen 287 SSILGRPA--AYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVED 364 (473)
T ss_pred CcccCCCh--HHHHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHh
Confidence 11112121 35566789999999999999999884 345688889999999998544321
Q ss_pred ------------------------------CCCCC-CccEEEEEEEEeecCCCCCceEEEEEEcCCCCeEEEeCCcceee
Q 017509 304 ------------------------------TPSAE-GRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAI 352 (370)
Q Consensus 304 ------------------------------~~~~~-~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~~V~~v 352 (370)
..... ...|.|.|||.|.|.+..+|||++++|...+.|++|||..|+.+
T Consensus 365 kk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v 444 (473)
T KOG1872|consen 365 KKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFV 444 (473)
T ss_pred cCCchhhcccccCcCcccccccccchhccccccccccceeeeeEeeeccccccCCCcceEEEeccCCceeeccccccccc
Confidence 00122 67899999999999999999999999998889999999999999
Q ss_pred ccccccC-------CCcEEEEEE
Q 017509 353 GTSKVLH-------DQAYVLFYK 368 (370)
Q Consensus 353 ~~~~v~~-------~~~yil~Y~ 368 (370)
..+.+.. ..||||+|+
T Consensus 445 ~~e~i~~lsgggd~~~ayvllyk 467 (473)
T KOG1872|consen 445 LGETILSLSGGGDWHSAYVLLYK 467 (473)
T ss_pred cccceeeecCCCccchhhheeec
Confidence 9888863 499999997
No 38
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.94 E-value=7.6e-27 Score=200.11 Aligned_cols=284 Identities=21% Similarity=0.291 Sum_probs=221.3
Q ss_pred CCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCCChH
Q 017509 17 RGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPS 96 (370)
Q Consensus 17 ~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~p~ 96 (370)
+||.|+.++-|+|+++|+|.+.+++|++++.... .-+.-..++..|..+++.+|.+- .-..-++|.
T Consensus 135 VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n--~~d~~~~lv~rl~~l~rklw~~r------------~fk~hvSph 200 (442)
T KOG2026|consen 135 VGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN--YFDNLTELVQRLGELIRKLWNPR------------NFKGHVSPH 200 (442)
T ss_pred eccchhhhHHHHHHHHHHHhccchhhhhhccccc--ccchhHHHHHHHHHHHHHhcChh------------hhcccCCHH
Confidence 8999999999999999999999999999977432 23445678899999999999764 344669999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCccccc
Q 017509 97 MFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTR 176 (370)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (370)
.+++++..... ..|..++|.|+-||+.+||+.||..+....
T Consensus 201 e~lqaV~~~s~----k~f~i~~q~DpveFlswllntlhs~l~~~k----------------------------------- 241 (442)
T KOG2026|consen 201 EFLQAVMKLSK----KRFRIGQQSDPVEFLSWLLNTLHSDLRGSK----------------------------------- 241 (442)
T ss_pred HHHHHHHHHhh----hheecCCCCCHHHHHHHHHHHHHHHhCCCC-----------------------------------
Confidence 99998877643 235888999999999999999999873221
Q ss_pred cccCCcchhhhccceEEEeEEEe-c----CCCcCeeecCCEEeeeecCCCc------------ccCHHHHHHhcCCCcee
Q 017509 177 TQSFLPSALSDIFGGQLKSVVKA-Q----GNKASATVQPFLLLHLDIYSEA------------VHTIEDALRLFSAPENL 239 (370)
Q Consensus 177 ~~~~~~~~i~~~F~~~~~~~~~C-~----c~~~~~~~~~~~~l~l~i~~~~------------~~sl~~~l~~~~~~e~~ 239 (370)
...++|+..|.|.+.....- . ........-+|+.|.|++|..+ +..|-++|..|-....-
T Consensus 242 ---~~~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~ 318 (442)
T KOG2026|consen 242 ---KASSIIHKSFQGEVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVT 318 (442)
T ss_pred ---CchhHhhHhhcceEEeeeeccccccccccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceee
Confidence 11246999999988765444 2 2334566789999999999653 57888999886543332
Q ss_pred cCCCccccCCCcceeeeEEEeecccCcceEEEEeeEEeCCCCeeccCcccccC-cccccCccc---ccCCCCCCccEEEE
Q 017509 240 EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFP-LQLVLGRDL---LVTPSAEGRKYELV 315 (370)
Q Consensus 240 ~~~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~p-~~l~l~~~~---~~~~~~~~~~Y~L~ 315 (370)
+ +. +...+ ++.++.++|+||++|++||.-++....|+.+-++|| ..+++.+.. .. ....-..|.|.
T Consensus 319 e-~~-------~~~~~-~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 388 (442)
T KOG2026|consen 319 E-VV-------TPKLA-MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKA-VNHKVTQYSLV 388 (442)
T ss_pred e-ec-------chhhh-hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhhccc-ccCccccccch
Confidence 2 11 22223 778899999999999999999998899999999999 345554332 22 33445889999
Q ss_pred EEEEeecCCCCCceEEEEEEcC-CCCeEEEeCCcceeeccccccCCCcEEEEEEe
Q 017509 316 ATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 369 (370)
Q Consensus 316 ~vi~H~G~~~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~r 369 (370)
|-++|. ..-|||...+++. .++||..+|-.|++..++-+.-..+||-+|++
T Consensus 389 ~N~i~~---~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~ 440 (442)
T KOG2026|consen 389 ANAIHE---DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMIFLKESFIQIWEK 440 (442)
T ss_pred hhhhcC---cccCceEEEEEeCCCcceEEecccchhhhhhHHHHHHHHHHHHHhc
Confidence 999997 5679999999986 68999999999999998888777788777764
No 39
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.84 E-value=2.3e-20 Score=175.94 Aligned_cols=316 Identities=14% Similarity=0.125 Sum_probs=201.7
Q ss_pred CCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCCChH
Q 017509 17 RGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPS 96 (370)
Q Consensus 17 ~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~p~ 96 (370)
+||.-.+-+-|.||+||+|+.+|++|..+.+. .+....|+.|+|.-||.+|... .++.....
T Consensus 500 aGLe~~i~N~YcNamiQllyfl~~~r~~vl~H----~C~~e~CL~CELGFLF~Ml~~S--------------~G~~Cqa~ 561 (1118)
T KOG1275|consen 500 AGLETDIPNSYCNAMIQLLYFLPPIRSIVLRH----ICTKEFCLLCELGFLFTMLDSS--------------TGDPCQAN 561 (1118)
T ss_pred eccCCCCchHHHHHHHHHHHhccHHHHHHHcC----ccchhHHHHHHHHHHHHHHhhh--------------cCCccchh
Confidence 78888888899999999999999999999884 6778899999999999998753 35567888
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCccccc
Q 017509 97 MFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTR 176 (370)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (370)
+|..+++.......-. ..-.+.++.+.+.. +.+.+......- ........+ .. ..+-.....+++
T Consensus 562 NFlraf~t~~~a~~LG--~vl~d~~~~~~~~~--~~liq~~~~~~~---set~~~~d~------~~--~~~~~~s~~~~~ 626 (1118)
T KOG1275|consen 562 NFLRAFRTNPEASALG--LVLSDTQISGTVND--DVLIQDAEGFIS---SETSRHLDC------QD--CRGLQQSESVDG 626 (1118)
T ss_pred HHHHHHhhChHhhhhc--ccccchhhccccch--HHHhhhhhhccc---hhhhhhhhH------HH--hhhhhhhhcccC
Confidence 8888887764322111 11122222222111 111111110000 000000000 00 000000000000
Q ss_pred --cccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcc-------cCHHHHHHhcCCCceecCCCccc
Q 017509 177 --TQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAV-------HTIEDALRLFSAPENLEGYRTSS 246 (370)
Q Consensus 177 --~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~-------~sl~~~l~~~~~~e~~~~~~c~~ 246 (370)
..-.....+.+.|+...+.+..| .|+....+......+.+..|+... ......|+.......-....|+.
T Consensus 627 ~~~~vn~~~~l~q~F~~~~e~~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~kn~~~~C~~ 706 (1118)
T KOG1275|consen 627 ESFKVNYAPVLQQSFCQEIEKSLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFKNKQAWCET 706 (1118)
T ss_pred ceeeecchhHHHHHhhhHHHHhhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhccccccccccc
Confidence 00111236889999999999999 898887777777777777776532 22334444322212111167888
Q ss_pred cCCCcceeeeEEEeecccCcceEEEEeeEEeCC--C--CeeccCcccccCcccccCccc-----------------ccCC
Q 017509 247 TGNAGVVTAKKSVKIQTLSKILILHLMRFSYGS--Q--GSTKLHKSVRFPLQLVLGRDL-----------------LVTP 305 (370)
Q Consensus 247 c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~--~--~~~K~~~~v~~p~~l~l~~~~-----------------~~~~ 305 (370)
|+ ......++..+..+|++|.|...-+.... . +..|....|-+|.++.+..-= ..-+
T Consensus 707 C~--k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~~~d 784 (1118)
T KOG1275|consen 707 CT--KPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLPDYD 784 (1118)
T ss_pred cc--CCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCcccc
Confidence 84 44467788889999999999887766441 1 224556777888886663210 0012
Q ss_pred CCCCccEEEEEEEEeecCCCCCceEEEEEEc--------C-CCCeEEEeCCcceeecccccc-----CCCcEEEEE
Q 017509 306 SAEGRKYELVATVTHHGRDPSKGHYTADARY--------F-NDQWLHFDDASVTAIGTSKVL-----HDQAYVLFY 367 (370)
Q Consensus 306 ~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~--------~-~~~W~~~nD~~V~~v~~~~v~-----~~~~yil~Y 367 (370)
......|+|.|+|+|.|...+.+|++++|+. + +.+||.|||..|.+++++|+. +..|.||+|
T Consensus 785 ~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 785 EPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred CCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 3456899999999999998899999999985 1 358999999999999999887 469999999
No 40
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.80 E-value=2.6e-08 Score=82.62 Aligned_cols=129 Identities=12% Similarity=0.197 Sum_probs=77.8
Q ss_pred hhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecCCCccccCCCcceeeeEEEeecc
Q 017509 185 LSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQT 263 (370)
Q Consensus 185 i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~~~c~~c~~~~~~~~~~~~~i~~ 263 (370)
+.++|...+.=...| .|+......-.- .+ .|+-..+..|.-.....-..|..|+.+ ...++..+.+
T Consensus 123 ~E~lF~~sf~WeFeC~~Cg~~~~~R~~K-----~L-----~TFtnv~pdwhPLnA~h~~pCn~C~~k---sQ~rkMvlek 189 (275)
T PF15499_consen 123 IEKLFLYSFSWEFECSQCGHKYQNRCTK-----TL-----VTFTNVIPDWHPLNAVHFGPCNSCNSK---SQRRKMVLEK 189 (275)
T ss_pred HHhHhheeeEEEEEccccCChhhhhhee-----ee-----cccCCCCCCCCcccccccCCCcccCCh---HHhHhhhhhc
Confidence 678888888888899 776533221110 00 111111111111111122568888544 3566778999
Q ss_pred cCcceEEEEeeEEeCCCCeeccCcccccCcccccCcccccCCCCCCccEEEEEEEEeecCCCCCceEEEEEEcCCCCeEE
Q 017509 264 LSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLH 343 (370)
Q Consensus 264 lP~~L~i~l~R~~~~~~~~~K~~~~v~~p~~l~l~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~~~~W~~ 343 (370)
+|+++.+|+- +|-..+ |+..|.. .-....|++.+||-+.-. --|+++++++.+|.|..
T Consensus 190 v~~vfmLHFV-----eGLP~n-----------dl~~ysF---~feg~~Y~Vt~VIQY~~~---~~HFvtWi~~~dGsWLe 247 (275)
T PF15499_consen 190 VPPVFMLHFV-----EGLPHN-----------DLQHYSF---HFEGCLYQVTSVIQYQAN---LNHFVTWIRDSDGSWLE 247 (275)
T ss_pred Cchhhhhhhh-----ccCCcc-----------CCCccce---eecCeeEEEEEEEEEecc---CceeEEEEEcCCCCeEe
Confidence 9999999963 121122 2222211 122678999999998754 34999999999999999
Q ss_pred EeCCc
Q 017509 344 FDDAS 348 (370)
Q Consensus 344 ~nD~~ 348 (370)
|||-+
T Consensus 248 cDDLk 252 (275)
T PF15499_consen 248 CDDLK 252 (275)
T ss_pred eccCC
Confidence 99965
No 41
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=6.2e-05 Score=72.33 Aligned_cols=31 Identities=55% Similarity=1.018 Sum_probs=28.8
Q ss_pred cccCCchhhHHHHHHHHhCCHHHHHHHHhhh
Q 017509 19 LINSGNLCFLNATLQALMSCSPFVQLLQELR 49 (370)
Q Consensus 19 L~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~ 49 (370)
|.|.||+||.||+||+|..+|+|+-.+....
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~ 64 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLP 64 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHH
Confidence 9999999999999999999999998887654
No 42
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=96.82 E-value=0.038 Score=49.15 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=18.2
Q ss_pred ChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHH
Q 017509 94 SPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMH 134 (370)
Q Consensus 94 ~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~ 134 (370)
+|..|...+-..... ..|+-.||+++|..|++.+.
T Consensus 144 ~~~~fVa~~Ya~~~~------~~G~~gDa~~~L~~ll~~~~ 178 (320)
T PF08715_consen 144 DPAPFVAWCYASTNA------KKGDPGDAEYVLSKLLKDAD 178 (320)
T ss_dssp --HHHHHHHHHHTT--------TTS---HHHHHHHHHTTB-
T ss_pred ChHHHHHHHHHHcCC------CCCCCcCHHHHHHHHHHhcc
Confidence 345555555443322 56799999999998887665
No 43
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=96.79 E-value=0.00053 Score=62.83 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=19.2
Q ss_pred CCcccCCchhhHHHHHHHHhCCH
Q 017509 17 RGLINSGNLCFLNATLQALMSCS 39 (370)
Q Consensus 17 ~GL~N~gntCy~Ns~lQ~L~~~p 39 (370)
.|++-.-|.||+||.|-.++.-.
T Consensus 369 kgiqgh~nscyldstlf~~f~f~ 391 (724)
T KOG3556|consen 369 KGIQGHPNSCYLDSTLFKPFEFD 391 (724)
T ss_pred ccccCCcchhhcccccccccccc
Confidence 68888889999999998877643
No 44
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.00036 Score=67.61 Aligned_cols=225 Identities=15% Similarity=0.152 Sum_probs=119.6
Q ss_pred HHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCcccccccc
Q 017509 100 AVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQS 179 (370)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (370)
-++..+++.+.. +......++.++|..++..|++....... ..-......+.|.+.....+
T Consensus 532 ~al~~~~~~s~~--~~~~~~~~~S~lL~~ll~~l~~~~~~ss~---------~~~v~~aile~~~~Wk~~er-------- 592 (806)
T KOG1887|consen 532 IALQNFFPASVS--ESIKHEGVYSELLSDLLLSLEEVHNASSS---------AADVVVAILEFWQCWKNPER-------- 592 (806)
T ss_pred chhhhcCCcchH--HHHHhhhhHHHHHHHHHhhhHHHhhhcch---------hhHHHHHHHhcccccccHHH--------
Confidence 344444444321 13446677889999999999887643211 00000011122222222111
Q ss_pred CCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCC---------cccCHHHHHHhcCCCceecCCCcccc--
Q 017509 180 FLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSE---------AVHTIEDALRLFSAPENLEGYRTSST-- 247 (370)
Q Consensus 180 ~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~---------~~~sl~~~l~~~~~~e~~~~~~c~~c-- 247 (370)
.+.++++|+.+.-....| .|....... ........+... +..+.++.|+.. ..+.. ..|..-
T Consensus 593 --~~l~~~lf~l~~~e~~Sc~~cr~~~n~p-eqsS~~~~~~a~slr~~k~a~~n~~f~~ilk~i-~m~~~--m~cD~~~g 666 (806)
T KOG1887|consen 593 --ESLVNRLFTLEEKERMSCSKCRRDLNYP-EQSSYGIVIAADSLRQLKCAFQNITFEDILKNI-RMNDK--MLCDKETG 666 (806)
T ss_pred --HHHHHhhhhhhhhhhccccccccCCCCc-chhhhhhhccchhhhhHHHHhhhhhHHHHHHHh-hhhhh--hcccccCC
Confidence 235778898888888888 665433222 111111122111 235566666552 22211 223221
Q ss_pred CCCcceeeeEEEeecccCcceEEEEeeEEeCCCCeeccCcccccCcccccCcccccCCCCCCccEEEEEEEEeecCCCCC
Q 017509 248 GNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSK 327 (370)
Q Consensus 248 ~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~p~~l~l~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~ 327 (370)
||.. ...-...|..+|++++|.+.. ...+....-..+...+..++|++.-. ........+|+|+++|.-+.. +
T Consensus 667 GCgk--~n~v~h~is~~P~vftIvlew-Ek~ETe~eI~~T~~aL~teidis~~y-~~g~ep~t~yrLVSmv~~~e~---~ 739 (806)
T KOG1887|consen 667 GCGK--ANLVHHILSPCPPVFTIVLEW-EKSETEKEISETTKALATEIDISRLY-REGLEPNTKYRLVSMVGNHEE---G 739 (806)
T ss_pred CCcc--hhhhhhhcCCCCCeeEeeeeh-hcccchHHHHHHHHHHHhhhhHHHHh-hhccCcCceeEEEEEeeeccc---c
Confidence 1221 233445688899999996642 21111112223334555556666432 134577899999999976633 5
Q ss_pred ceEEEEEEcCCCCeE--EEeCCcceeec-cccc
Q 017509 328 GHYTADARYFNDQWL--HFDDASVTAIG-TSKV 357 (370)
Q Consensus 328 GHY~a~vr~~~~~W~--~~nD~~V~~v~-~~~v 357 (370)
++|.|+.+. .+.|+ ..+|..+..+. +.+|
T Consensus 740 ~~~~C~Aye-~Nrwvs~r~~~~~~e~iG~w~dv 771 (806)
T KOG1887|consen 740 EEYICFAYE-PNRWVSLRHEDSQGEVVGDWKDV 771 (806)
T ss_pred ceEEEeecc-CCcchhhHHHHHHhhhccchHHH
Confidence 799999999 56687 99998887773 3344
No 45
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=95.66 E-value=0.0064 Score=48.31 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=21.3
Q ss_pred CCceEEEEEEcCCCCeEEEeCCcceeecc
Q 017509 326 SKGHYTADARYFNDQWLHFDDASVTAIGT 354 (370)
Q Consensus 326 ~~GHY~a~vr~~~~~W~~~nD~~V~~v~~ 354 (370)
+.||.+.+.+..+ .||.+||+.+.+..+
T Consensus 137 g~~Havfa~~ts~-gWy~iDDe~~y~~tP 164 (193)
T PF05408_consen 137 GQEHAVFACVTSD-GWYAIDDEDFYPWTP 164 (193)
T ss_dssp STTEEEEEEEETT-CEEEEETTEEEE---
T ss_pred CCcceEEEEEeeC-cEEEecCCeeeeCCC
Confidence 3489999999845 499999999988754
No 46
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.035 Score=49.67 Aligned_cols=219 Identities=23% Similarity=0.212 Sum_probs=121.0
Q ss_pred CCCCCCCCCCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCCCCCCchHHHHHHHHhccCCCCCCCCcccccc
Q 017509 6 EPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNIS 85 (370)
Q Consensus 6 ~~~~~~~~~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 85 (370)
...+..+..-|+|+.|.||.|..+|..|...+..++...+.....+..+..+......+.++|.......-.....+..
T Consensus 168 ~~~~~n~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~nkeS- 246 (420)
T KOG1871|consen 168 ELVPPNDEFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSNKES- 246 (420)
T ss_pred hhcCCcccccccccccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccccccc-
Confidence 3455667778899999999999999999999999999999887777777777666667777765433221111111100
Q ss_pred cccCCCCCChHHH----------HHHHhhcCCCCC--------CCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 017509 86 VLDIGRPFSPSMF----------EAVLKNFTPDVP--------NSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSI 147 (370)
Q Consensus 86 ~~~~~~~i~p~~~----------~~~l~~~~~~~~--------~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~ 147 (370)
....+..|.+| ..++..+.+... +.-.....|.++.+|...|+..++...-+..+.-..
T Consensus 247 --~tlqPF~tlqldiq~~~i~sv~~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k- 323 (420)
T KOG1871|consen 247 --ATLQPFFTLQLDIQSEKIHSVQDALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARK- 323 (420)
T ss_pred --cccCccceeeeeeeccccCCHHHHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhh-
Confidence 11122222222 233333322211 111244578999999999999999887554221100
Q ss_pred CCccccccccccchhhhhhCCCCCccccccccCCcchhhhccceEEEeEEEecCCCcCeeecCCEEeeeecCCCcccCHH
Q 017509 148 NGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIE 227 (370)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~c~~~~~~~~~~~~l~l~i~~~~~~sl~ 227 (370)
.-..|+-....+.+..+.. ...++-+ ..|++++.+...-.....+.+.+.+......+...+-.-++
T Consensus 324 -----------~~K~i~~~~~l~i~~~~~s-~gvk~~~-~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rID 390 (420)
T KOG1871|consen 324 -----------LGKKIEYPWTLKISKNCFS-QGLKIRI-LIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRID 390 (420)
T ss_pred -----------hchhhhccceeeechhhhc-cccchhh-hccccccceEEEEEecccccccCceEEeeeecccCceeEec
Confidence 0111222222222221111 1111112 34555554433333444566666666666666666666666
Q ss_pred HHHHhcCCCceecC
Q 017509 228 DALRLFSAPENLEG 241 (370)
Q Consensus 228 ~~l~~~~~~e~~~~ 241 (370)
|.+-.+...+.+.+
T Consensus 391 D~~i~~v~q~dv~~ 404 (420)
T KOG1871|consen 391 DALILFVAQEDVEK 404 (420)
T ss_pred cceeeeccHhhhcc
Confidence 66665555555553
No 47
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=90.01 E-value=0.83 Score=36.66 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=15.3
Q ss_pred CCcccCCchhhHHHHHHHHhC
Q 017509 17 RGLINSGNLCFLNATLQALMS 37 (370)
Q Consensus 17 ~GL~N~gntCy~Ns~lQ~L~~ 37 (370)
.|+.|.+|+||+||++|++..
T Consensus 34 t~~PN~~dnCWlNaL~QL~~~ 54 (193)
T PF05408_consen 34 TGLPNNHDNCWLNALLQLFRY 54 (193)
T ss_dssp E----SSSTHHHHHHHHHHHH
T ss_pred ecCCCCCCChHHHHHHHHHHH
Confidence 699999999999999998764
No 48
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=89.91 E-value=0.53 Score=44.87 Aligned_cols=77 Identities=18% Similarity=0.112 Sum_probs=53.3
Q ss_pred cceEEEEeeEEeC---------CCCeeccCcccccCcccccCcccccCCCCCCccEEEEEEEEeecC-CC----------
Q 017509 266 KILILHLMRFSYG---------SQGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGR-DP---------- 325 (370)
Q Consensus 266 ~~L~i~l~R~~~~---------~~~~~K~~~~v~~p~~l~l~~~~~~~~~~~~~~Y~L~~vi~H~G~-~~---------- 325 (370)
-+|++.++|-+.. +.+..-++.++++..++.+. ...|+|.+.|||.-. +.
T Consensus 479 GvLIfyVeRRq~k~~~~Gec~tg~rs~ind~pidv~q~i~in----------gimyrL~SAVCYK~~d~~~d~C~~~dif 548 (666)
T PF03292_consen 479 GVLIFYVERRQNKNTFSGECYTGFRSRINDSPIDVSQEITIN----------GIMYRLKSAVCYKIGDQFFDGCNGNDIF 548 (666)
T ss_pred ceEEEEEeehhccceeccccccchhhhhcCcccccccceeec----------ceeeeeehhheeeccccccCCCCCCcce
Confidence 7899999998653 33345567777777777776 678999999999643 21
Q ss_pred CCceEEEEEEcCCCCeEEEeCCcceeecc
Q 017509 326 SKGHYTADARYFNDQWLHFDDASVTAIGT 354 (370)
Q Consensus 326 ~~GHY~a~vr~~~~~W~~~nD~~V~~v~~ 354 (370)
-.|||+ .++.+.| |+++|-..+-..+.
T Consensus 549 lkG~yt-IlfTe~G-pw~YDP~s~~s~~s 575 (666)
T PF03292_consen 549 LKGYYT-ILFTEMG-PWMYDPLSIFSKNS 575 (666)
T ss_pred eceeEE-EEEecCC-ceeeCchhhcCcch
Confidence 137774 5666466 88888766644443
No 49
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=73.28 E-value=5.4 Score=31.81 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=26.3
Q ss_pred EEEEEEeecCCCCCceEEEEEEcCCCCeEEEeCCcceee
Q 017509 314 LVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAI 352 (370)
Q Consensus 314 L~~vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~~V~~v 352 (370)
..|+|++.+. |++|..|- +|.||-+|-..-.|.
T Consensus 99 ~~gfI~N~~~-----HWf~iRki-~~~wyNLDS~l~~P~ 131 (157)
T PF02099_consen 99 EFGFICNLSR-----HWFAIRKI-GGQWYNLDSKLKEPE 131 (157)
T ss_dssp SSEEEEECTT-----EEEEEEEE-TTEEEEECTTTSS-E
T ss_pred ceEEEeccCc-----ceEEEEee-CCeeEeccCCCCCCc
Confidence 4688999666 99999998 889999998765443
No 50
>PF10748 DUF2531: Protein of unknown function (DUF2531); InterPro: IPR019684 This entry represents proteins with unknown function and appears to be restricted to Enterobacteriaceae.
Probab=69.60 E-value=7.9 Score=29.65 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=29.4
Q ss_pred CccEEEEEEEEeecCCCCCceEEEEEEcCCCCeEEEeCCcc
Q 017509 309 GRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASV 349 (370)
Q Consensus 309 ~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~~V 349 (370)
-..++|.||| ..+++|++++.+++++|.+.-...+
T Consensus 33 Ls~WrlqGiV------g~~~~~~gwl~~p~g~W~Rv~~g~~ 67 (132)
T PF10748_consen 33 LSQWRLQGIV------GQGDRWIGWLQDPQGKWLRVRQGQV 67 (132)
T ss_pred cccceEccEE------CCCCcEEEEEECCCCCeEEeccCCC
Confidence 4579999998 6678999999999999999766544
No 51
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=63.06 E-value=8.8 Score=18.22 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=10.9
Q ss_pred EEEcCCCCeEEEeCCc
Q 017509 333 DARYFNDQWLHFDDAS 348 (370)
Q Consensus 333 ~vr~~~~~W~~~nD~~ 348 (370)
+++. ++.||.|+++-
T Consensus 3 W~~~-~~~wYy~~~~G 17 (19)
T PF01473_consen 3 WVQD-NGNWYYFDSDG 17 (19)
T ss_dssp EEEE-TTEEEEETTTS
T ss_pred CEEE-CCEEEEeCCCc
Confidence 4555 67899998763
No 52
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=62.10 E-value=8.2 Score=25.14 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=25.2
Q ss_pred CCccccCCCcceeeeEEEeecccCcceEEEEeeEEeC
Q 017509 242 YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG 278 (370)
Q Consensus 242 ~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~ 278 (370)
..|++|++.....-+....=..+.+++=||.++|-..
T Consensus 5 ~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~i 41 (68)
T COG3478 5 FKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIVI 41 (68)
T ss_pred ccCCCcCCcchhhceeeccCCCcceeEEecccEEEEE
Confidence 3599998876544333333356788999999888743
No 53
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=51.94 E-value=13 Score=24.46 Aligned_cols=10 Identities=30% Similarity=0.654 Sum_probs=7.5
Q ss_pred CCccccCCCc
Q 017509 242 YRTSSTGNAG 251 (370)
Q Consensus 242 ~~c~~c~~~~ 251 (370)
|.|++|++..
T Consensus 1 y~C~KCg~~~ 10 (64)
T PF09855_consen 1 YKCPKCGNEE 10 (64)
T ss_pred CCCCCCCCcc
Confidence 5799998754
No 54
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=47.11 E-value=24 Score=26.59 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=34.8
Q ss_pred EEEecCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecC--------CCccccCC
Q 017509 196 VVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG--------YRTSSTGN 249 (370)
Q Consensus 196 ~~~C~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~--------~~c~~c~~ 249 (370)
.++|.|++.--.....|.|..+|-. .+-++.|+...-...+.+ +.|+.|+-
T Consensus 70 v~rcecghsf~d~r~nwkl~a~i~v---rdtee~lreiyp~s~ipdp~wme~reficpecg~ 128 (165)
T COG4647 70 VIRCECGHSFGDYRENWKLHANIYV---RDTEEKLREIYPKSDIPDPQWMEIREFICPECGI 128 (165)
T ss_pred EEEEeccccccChhhCceeeeEEEE---cchHHHHHHhCcccCCCCchHHHHHHhhCccccc
Confidence 6789999988888888988887742 345556655443333322 78999853
No 55
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=37.82 E-value=36 Score=35.43 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.0
Q ss_pred ecCCCCCceEEEEEEcCCCCeEEEeCC
Q 017509 321 HGRDPSKGHYTADARYFNDQWLHFDDA 347 (370)
Q Consensus 321 ~G~~~~~GHY~a~vr~~~~~W~~~nD~ 347 (370)
.|.+..+|||+..++.+++++|+||--
T Consensus 56 v~p~~~sghwimlikg~gn~y~lfdpl 82 (1439)
T PF12252_consen 56 VSPRQDSGHWIMLIKGQGNQYYLFDPL 82 (1439)
T ss_pred cCCCCcCceeEEEEEcCCCceEEeccc
Confidence 356678999999999988899999853
No 56
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=37.68 E-value=24 Score=22.27 Aligned_cols=25 Identities=8% Similarity=0.142 Sum_probs=17.0
Q ss_pred CccccCCCcceeeeEEEeecccCcc
Q 017509 243 RTSSTGNAGVVTAKKSVKIQTLSKI 267 (370)
Q Consensus 243 ~c~~c~~~~~~~~~~~~~i~~lP~~ 267 (370)
.|+.|+.++.......+.+..+|-|
T Consensus 6 ~CP~CgnKTR~kir~DT~LkNfPly 30 (55)
T PF14205_consen 6 LCPICGNKTRLKIREDTVLKNFPLY 30 (55)
T ss_pred ECCCCCCccceeeecCceecccccc
Confidence 5888877776666666666666644
No 57
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=36.66 E-value=51 Score=24.96 Aligned_cols=27 Identities=7% Similarity=0.185 Sum_probs=21.9
Q ss_pred ccEEEEEEEEeecCCCCCceEEEEEEc
Q 017509 310 RKYELVATVTHHGRDPSKGHYTADARY 336 (370)
Q Consensus 310 ~~Y~L~~vi~H~G~~~~~GHY~a~vr~ 336 (370)
..=+..|+|+-......+-||+|||.+
T Consensus 81 ~~~dhFgFIcrEs~~~~~~~f~CyVFq 107 (129)
T cd01269 81 KHVDHFGFICRESPEPGLSQYICYVFQ 107 (129)
T ss_pred CCcceEEEEeccCCCCCcceEEEEEEE
Confidence 334678999998886667899999987
No 58
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=34.80 E-value=9.1 Score=36.77 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=28.8
Q ss_pred CCCCCCCcccCCchhhHHHHHHHHhCCHHHHHHH
Q 017509 12 KDLLPRGLINSGNLCFLNATLQALMSCSPFVQLL 45 (370)
Q Consensus 12 ~~~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l 45 (370)
......|+.+.+++|++|+.++.++.++.|.-+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~ 106 (492)
T KOG1867|consen 73 HKLEHSGNKKHNNTIDVNNGLLYCFACPDFIYDA 106 (492)
T ss_pred ccccccccccccccceeehhhheeccCCcEeecc
Confidence 3445589999999999999999999999887654
No 59
>cd02420 Peptidase_C39D A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=34.47 E-value=84 Score=23.37 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=24.1
Q ss_pred CceEEEEEEcCCCCeEEEeCCc-ceeeccccccCC-CcEEEE
Q 017509 327 KGHYTADARYFNDQWLHFDDAS-VTAIGTSKVLHD-QAYVLF 366 (370)
Q Consensus 327 ~GHY~a~vr~~~~~W~~~nD~~-V~~v~~~~v~~~-~~yil~ 366 (370)
.|||+-..+..+++|+.+|-.. ...++.++.... +.++++
T Consensus 83 ~g~~~Vl~~~~~~~~~i~dp~~~~~~~s~~el~~~~~g~vi~ 124 (125)
T cd02420 83 FNHFLVVEGFDKRKVFLNDPATGRRTVSLEEFDQSFTGVVLT 124 (125)
T ss_pred CCEEEEEEEEeCCEEEEECCCcCceeecHHHHHhhCCceEEe
Confidence 4899999998667777766543 234455444332 455544
No 60
>KOG2935 consensus Ataxin 3/Josephin [General function prediction only]
Probab=33.98 E-value=4.9 Score=34.04 Aligned_cols=27 Identities=15% Similarity=0.443 Sum_probs=22.1
Q ss_pred EEEEEeecCCCCCceEEEEEEcCCCCeEEEeCC
Q 017509 315 VATVTHHGRDPSKGHYTADARYFNDQWLHFDDA 347 (370)
Q Consensus 315 ~~vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~ 347 (370)
.|+|||.-. ||++..|- +++||-+|--
T Consensus 104 rafICnl~e-----HWF~iRKf-g~qWfnlnSl 130 (315)
T KOG2935|consen 104 RAFICNLKE-----HWFTIRKF-GKQWFNLNSL 130 (315)
T ss_pred hhhhhcchh-----hhhhHhhh-cchhccchhh
Confidence 578899877 99987777 7889999854
No 61
>PF09871 DUF2098: Uncharacterized protein conserved in archaea (DUF2098); InterPro: IPR019209 This family of proteins have no known function.
Probab=33.79 E-value=84 Score=22.43 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=23.8
Q ss_pred EEEEeecCCCCCceEEEEEEcCCCCeEEEeCCcc
Q 017509 316 ATVTHHGRDPSKGHYTADARYFNDQWLHFDDASV 349 (370)
Q Consensus 316 ~vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~~V 349 (370)
+.|-+.++ .+.|+-+...-..++.|.+.|+...
T Consensus 7 s~VRY~~T-GT~G~V~diK~ed~~~wv~LD~t~L 39 (91)
T PF09871_consen 7 SYVRYINT-GTVGKVVDIKEEDGETWVLLDSTDL 39 (91)
T ss_pred CEEEECCC-CeEEEEEEEEEeCCCeEEEEccCCc
Confidence 44555555 7889988885555678999988754
No 62
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=33.36 E-value=1.5e+02 Score=20.62 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=29.5
Q ss_pred CCchHHHHHHHHhccCCCCCCCCcccccccccCCCCCChHHHHHHHhhcCCCC
Q 017509 57 GYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDV 109 (370)
Q Consensus 57 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~~~~~ 109 (370)
--|+...++..+.+|. ..+.++.-..+++.|.+.+|..
T Consensus 9 fiPL~EvlC~~I~dln---------------~~~~~at~E~l~~~L~~~yp~i 46 (80)
T PF10264_consen 9 FIPLPEVLCWVISDLN---------------AAGQPATQETLREHLRKHYPGI 46 (80)
T ss_pred ceeHHHHHHHHHHHHh---------------ccCCcchHHHHHHHHHHhCCCC
Confidence 4567888888888886 3456778888999999988764
No 63
>cd02418 Peptidase_C39B A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=27.19 E-value=1.9e+02 Score=21.64 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=26.2
Q ss_pred EEeecCCCCCceEEEEEEcCCCCeEEEeCC--cceeeccccccCC-CcEEEE
Q 017509 318 VTHHGRDPSKGHYTADARYFNDQWLHFDDA--SVTAIGTSKVLHD-QAYVLF 366 (370)
Q Consensus 318 i~H~G~~~~~GHY~a~vr~~~~~W~~~nD~--~V~~v~~~~v~~~-~~yil~ 366 (370)
|+|.......|||+-..+..++ ++.+.|- ....++.++.... ..++++
T Consensus 80 I~~~~~~~~~~~~~Vl~~~~~~-~~~i~dp~~~~~~~~~~ef~~~w~g~~l~ 130 (136)
T cd02418 80 IAHVIKEWKLNHYVVVYKIKKK-KILIADPAVGITKISKEEFEKEWTGVALF 130 (136)
T ss_pred EEEEccCCCCCeEEEEEEEcCC-EEEEECCCCCCEEeeHHHHHhhCeEEEEE
Confidence 4443323467899998887544 5555553 2334555555432 345544
No 64
>cd02419 Peptidase_C39C A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=26.81 E-value=1.7e+02 Score=21.66 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=24.4
Q ss_pred CCceEEEEEEcCCCCeEEEeCC-cceeeccccccCC-CcEEEEE
Q 017509 326 SKGHYTADARYFNDQWLHFDDA-SVTAIGTSKVLHD-QAYVLFY 367 (370)
Q Consensus 326 ~~GHY~a~vr~~~~~W~~~nD~-~V~~v~~~~v~~~-~~yil~Y 367 (370)
..|||+-..+..++.++.+|-. ....++.++.... +.++++-
T Consensus 82 ~~g~~~Vl~~~~~~~~~i~dp~~~~~~~~~~el~~~~~g~~i~~ 125 (127)
T cd02419 82 DMNHFVVLKKVSRRRIVIHDPALGKRKLSLEEASRHFTGVALEL 125 (127)
T ss_pred CCCEEEEEEEEcCCEEEEECCccCCEEEcHHHHHhhCCcEEEEE
Confidence 3489999888755555555522 2334566555443 4565553
No 65
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=26.77 E-value=39 Score=24.77 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=16.4
Q ss_pred CceEEEEEEcC--CCCeEE--EeCC
Q 017509 327 KGHYTADARYF--NDQWLH--FDDA 347 (370)
Q Consensus 327 ~GHY~a~vr~~--~~~W~~--~nD~ 347 (370)
-|.|++++|.. ++.||. .|+.
T Consensus 13 pGeyvviARr~~~G~~Wyvg~in~~ 37 (103)
T PF14509_consen 13 PGEYVVIARRKRDGDDWYVGGINGE 37 (103)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEE-T
T ss_pred CceEEEEEEEcCCCCCEEEEEeeCC
Confidence 58999999997 689997 4544
No 66
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=25.59 E-value=1.7e+02 Score=18.07 Aligned_cols=17 Identities=18% Similarity=0.310 Sum_probs=9.8
Q ss_pred CceEEEEEEcCCCCeEEE
Q 017509 327 KGHYTADARYFNDQWLHF 344 (370)
Q Consensus 327 ~GHY~a~vr~~~~~W~~~ 344 (370)
-|+.++-.. .+|.||..
T Consensus 5 ~G~~~~a~~-~d~~wyra 21 (57)
T smart00333 5 VGDKVAARW-EDGEWYRA 21 (57)
T ss_pred CCCEEEEEe-CCCCEEEE
Confidence 355444444 46777776
No 67
>PRK09750 hypothetical protein; Provisional
Probab=25.31 E-value=1.4e+02 Score=19.22 Aligned_cols=30 Identities=20% Similarity=0.510 Sum_probs=20.4
Q ss_pred ccEEEEEEEEeecCCCCCceEEEEEEcCCCCeEEEeCCcceee
Q 017509 310 RKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAI 352 (370)
Q Consensus 310 ~~Y~L~~vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~~V~~v 352 (370)
.+|++.|.|---|.+ --.|.+|.|...+..
T Consensus 2 ykY~I~Ati~KpGg~-------------P~~W~r~s~~~mtk~ 31 (64)
T PRK09750 2 YMYKITATIEKEGGT-------------PTNWTRYSKSKLTKS 31 (64)
T ss_pred ceeEEEEEEECCCCC-------------ccceeEecCCcCCHH
Confidence 357777777666653 236999999887654
No 68
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=24.57 E-value=1.1e+02 Score=19.67 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=17.2
Q ss_pred CCCceEEEEEEcCCCCeEEEeC
Q 017509 325 PSKGHYTADARYFNDQWLHFDD 346 (370)
Q Consensus 325 ~~~GHY~a~vr~~~~~W~~~nD 346 (370)
....|.+.-++. +++|+.+|-
T Consensus 46 ~~~~H~W~ev~~-~~~W~~~D~ 66 (68)
T smart00460 46 IWEAHAWAEVYL-EGGWVPVDP 66 (68)
T ss_pred CCCcEEEEEEEE-CCCeEEEeC
Confidence 457799999998 578999984
No 69
>cd02425 Peptidase_C39F A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=24.27 E-value=1.3e+02 Score=22.23 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=20.8
Q ss_pred ceEEEEEEcCCCCeEEEeCC-cceeeccccccCC-CcEEEE
Q 017509 328 GHYTADARYFNDQWLHFDDA-SVTAIGTSKVLHD-QAYVLF 366 (370)
Q Consensus 328 GHY~a~vr~~~~~W~~~nD~-~V~~v~~~~v~~~-~~yil~ 366 (370)
|||+-..+..++.++.+|-. ....++.++.... +.++++
T Consensus 85 ~~~~Vl~~~~~~~~~i~dp~~~~~~~~~~~l~~~~~g~~~~ 125 (126)
T cd02425 85 NHFVVLEKIKKNKVTIVDPAIGRIKISIDEFLENFSGYILT 125 (126)
T ss_pred CcEEEEEEEECCEEEEEcCCCCCEEECHHHHHhhCCcEEEe
Confidence 79998888755544444322 2234455444332 455554
No 70
>PF03412 Peptidase_C39: Peptidase C39 family This is family C39 in the peptidase classification. ; InterPro: IPR005074 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences defined by this cysteine peptidase domain belong to the MEROPS peptidase family C39 (clan CA). It is found in a wide range of ABC transporters, which are maturation proteases for peptide bacteriocins, the proteolytic domain residing in the N-terminal region of the protein []. A number of the proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Lantibiotic and non-lantibiotic bacteriocins are synthesised as precursor peptides containing N-terminal extensions (leader peptides) which are cleaved off during maturation. Most non-lantibiotics and also some lantibiotics have leader peptides of the so-called double-glycine type. These leader peptides share consensus sequences and also a common processing site with two conserved glycine residues in positions -1 and -2. The double- glycine-type leader peptides are unrelated to the N-terminal signal sequences which direct proteins across the cytoplasmic membrane via the sec pathway. Their processing sites are also different from typical signal peptidase cleavage sites, suggesting that a different processing enzyme is involved. ; GO: 0005524 ATP binding, 0008233 peptidase activity, 0006508 proteolysis, 0016021 integral to membrane; PDB: 3K8U_A 3B79_A.
Probab=23.23 E-value=1.4e+02 Score=22.42 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=24.2
Q ss_pred CCceEEEEEEcCCCCeEEEeCC-cceeeccccccCC-CcEEEEEE
Q 017509 326 SKGHYTADARYFNDQWLHFDDA-SVTAIGTSKVLHD-QAYVLFYK 368 (370)
Q Consensus 326 ~~GHY~a~vr~~~~~W~~~nD~-~V~~v~~~~v~~~-~~yil~Y~ 368 (370)
..|||+-..+..++....+|-. ....++.++.... +.++|+-+
T Consensus 83 ~~~h~vVi~~~~~~~~~i~dP~~g~~~~~~~~f~~~w~G~~l~~~ 127 (131)
T PF03412_consen 83 KDGHFVVIYKIDDGRVLIYDPKKGKIKLSKEEFEEIWTGEVLLIK 127 (131)
T ss_dssp CCCEEEEEEEECCCEEEECCTTTCEEEEEHHHHHHHEEEEEEEEE
T ss_pred cCcceEEEEeEcCcEEEEEeCCCCeEEEeHHHHHhhCCCEEEEEE
Confidence 5589998888855655555542 2334444444332 45555543
No 71
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=22.15 E-value=92 Score=22.57 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=17.5
Q ss_pred CCCceEEEEEEcCCCCeEEEe
Q 017509 325 PSKGHYTADARYFNDQWLHFD 345 (370)
Q Consensus 325 ~~~GHY~a~vr~~~~~W~~~n 345 (370)
...+|.++-|+.++++|+.+|
T Consensus 92 ~~~~H~w~ev~~~~~~W~~~D 112 (113)
T PF01841_consen 92 GNDNHAWVEVYLPGGGWIPLD 112 (113)
T ss_dssp SEEEEEEEEEEETTTEEEEEE
T ss_pred CCCCEEEEEEEEcCCcEEEcC
Confidence 456799999998777899987
No 72
>PF09149 DUF1935: Domain of unknown function (DUF1935); InterPro: IPR015232 This entry represents a conserved region found in various bacterial and eukaryotic hypothetical proteins, as well as in the cysteine protease calpain. Its function has not, as yet, been defined. ; PDB: 1R75_A 2FE0_A.
Probab=22.08 E-value=1.3e+02 Score=22.02 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=15.8
Q ss_pred ceEEEEEEcCCCCeEEEeCCcceeecc
Q 017509 328 GHYTADARYFNDQWLHFDDASVTAIGT 354 (370)
Q Consensus 328 GHY~a~vr~~~~~W~~~nD~~V~~v~~ 354 (370)
|=-+-.|-..+++|..|||+...++..
T Consensus 21 GlLfRiv~~~~~~WaFYNDT~~y~m~V 47 (104)
T PF09149_consen 21 GLLFRIVDEKEGRWAFYNDTKDYEMHV 47 (104)
T ss_dssp -SEEEEEETTTTEEEEEE--SSEEEEE
T ss_pred cEEEEEEECCCCEEEEEeCCCcEEEEE
Confidence 444444444578899999998766544
No 73
>PF14690 zf-ISL3: zinc-finger of transposase IS204/IS1001/IS1096/IS1165
Probab=21.99 E-value=1.7e+02 Score=17.35 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=21.1
Q ss_pred CCccccCCCccee------eeEEEeecccCcceEEEEeeEE
Q 017509 242 YRTSSTGNAGVVT------AKKSVKIQTLSKILILHLMRFS 276 (370)
Q Consensus 242 ~~c~~c~~~~~~~------~~~~~~i~~lP~~L~i~l~R~~ 276 (370)
..|+.|+...... ..+...+..-|-+|.+..+||.
T Consensus 3 ~~Cp~Cg~~~~~~~g~~~r~i~~l~~~~~~~~L~i~~~R~~ 43 (47)
T PF14690_consen 3 PRCPHCGSPSVHRHGYKTRRIRHLPIGGRPVYLRIRKRRYR 43 (47)
T ss_pred ccCCCcCCCceECCceEEEEEeecccCCEEEEEEEEeEEEE
Confidence 3688887544211 1222334555778999988886
No 74
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=21.59 E-value=1e+02 Score=23.05 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=23.4
Q ss_pred EEEEEEEeecCCCCCceEEEEEEcCCCCeEEEeCCcceeeccc
Q 017509 313 ELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTS 355 (370)
Q Consensus 313 ~L~~vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~~V~~v~~~ 355 (370)
-+.|||+-.-. . +|.++|.|+.|||.-.-.++.+
T Consensus 57 V~~AViVRtkk-----~----~rR~DGs~i~FddNA~Viin~~ 90 (122)
T COG0093 57 VVKAVVVRTKK-----E----VRRPDGSYIKFDDNAAVIINPD 90 (122)
T ss_pred eEEEEEEEeCC-----c----eEcCCCCEEEeCCceEEEECCC
Confidence 35677766544 1 2445999999999987777654
No 75
>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]
Probab=21.22 E-value=2.4e+02 Score=20.38 Aligned_cols=57 Identities=7% Similarity=-0.015 Sum_probs=28.1
Q ss_pred ceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHh--cCCCceecCCCccccCCC
Q 017509 190 GGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRL--FSAPENLEGYRTSSTGNA 250 (370)
Q Consensus 190 ~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~--~~~~e~~~~~~c~~c~~~ 250 (370)
.|...+...| .|............-..+. ...+++.|.. .+..-...+..|+.|+..
T Consensus 15 ~g~~~~rf~C~tCpY~~~I~~ei~~r~~~~----~Kevd~vlgg~~a~~nv~~t~~~Cp~Cgh~ 74 (105)
T KOG2906|consen 15 SGESCNRFSCRTCPYVFPISREISSRKYPK----LKEVDDVLGGDEAWENVDQTEATCPTCGHE 74 (105)
T ss_pred cCCeEeeEEcCCCCceeeEeeeeeccccCc----hhhhhhhcCCcccccchhhccCcCCCCCCC
Confidence 3444677888 7776543332222111121 2356666654 222222334789988654
No 76
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=20.88 E-value=1.1e+02 Score=23.09 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=14.1
Q ss_pred CCCceEEEEEEcCCCCeEEEeCC
Q 017509 325 PSKGHYTADARYFNDQWLHFDDA 347 (370)
Q Consensus 325 ~~~GHY~a~vr~~~~~W~~~nD~ 347 (370)
..+|||+..+-..++.++.++|-
T Consensus 121 ~~~~H~vvi~Gy~~~~~~~v~DP 143 (144)
T PF13529_consen 121 TYGGHYVVIIGYDEDGYVYVNDP 143 (144)
T ss_dssp -TTEEEEEEEEE-SSE-EEEE-T
T ss_pred CcCCEEEEEEEEeCCCEEEEeCC
Confidence 56899999887654337777773
Done!