Query 017509
Match_columns 370
No_of_seqs 141 out of 1178
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 15:34:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 4.8E-65 1.6E-69 468.5 25.7 323 14-370 6-358 (367)
2 2gfo_A Ubiquitin carboxyl-term 100.0 2.9E-64 9.8E-69 466.3 21.6 322 15-370 61-395 (396)
3 3nhe_A Ubiquitin carboxyl-term 100.0 3.7E-63 1.3E-67 453.6 26.2 324 13-370 6-342 (348)
4 3i3t_A Ubiquitin carboxyl-term 100.0 3.1E-63 1.1E-67 455.4 20.7 320 16-370 3-350 (355)
5 1nb8_A Ubiquitin carboxyl-term 100.0 6.9E-61 2.4E-65 437.5 25.6 292 14-370 4-314 (353)
6 2ayn_A Ubiquitin carboxyl-term 100.0 1.1E-61 3.8E-66 452.3 19.6 322 9-370 7-393 (404)
7 1vjv_A Ubiquitin carboxyl-term 100.0 7.6E-60 2.6E-64 440.7 22.4 299 9-370 17-413 (415)
8 3mhs_A Ubiquitin carboxyl-term 100.0 1.5E-58 5.2E-63 439.2 28.0 314 15-369 140-472 (476)
9 2f1z_A Ubiquitin carboxyl-term 100.0 1E-57 3.4E-62 437.1 26.9 290 13-370 172-483 (522)
10 3ihp_A Ubiquitin carboxyl-term 100.0 2.8E-57 9.7E-62 450.9 26.1 305 14-370 342-852 (854)
11 2vhf_A Ubiquitin carboxyl-term 100.0 9.8E-33 3.4E-37 241.8 6.6 230 14-347 7-309 (374)
12 3mp2_A Non-structural protein 97.6 0.00037 1.3E-08 56.3 9.3 35 315-353 161-195 (211)
13 2fe8_A PP1AB, ORF1AB, replicas 96.8 0.084 2.9E-06 45.6 16.1 37 315-354 260-296 (315)
14 1qmy_A Protease, leader protea 91.4 0.089 3E-06 39.0 2.0 35 315-354 110-144 (167)
15 2ww6_A Fibritin, T4 fibritin; 64.9 2.6 8.8E-05 21.2 1.0 15 331-346 11-25 (27)
16 3o65_A Putative ataxin-3-like 64.7 5.4 0.00019 31.6 3.4 34 314-353 110-143 (191)
17 1qmy_A Protease, leader protea 64.4 13 0.00046 27.6 5.2 21 17-37 14-34 (167)
18 1pfs_A PF3 SSDBP, PF3 single-s 27.7 1.2E+02 0.0043 19.4 5.0 25 325-349 48-75 (78)
19 2oxg_Z SOXZ protein; immunoglo 25.7 1.8E+02 0.006 20.5 6.4 55 309-369 17-80 (108)
20 1flt_X FLT-1, VGR1, FMS-like t 24.9 66 0.0023 22.1 3.3 35 310-345 53-88 (95)
21 3k8u_A Putative ABC transporte 24.5 48 0.0016 25.0 2.8 51 317-367 84-138 (156)
22 1r75_A Hypothetical protein; s 24.2 87 0.003 23.3 3.9 28 327-354 39-66 (141)
23 2x9a_A Attachment protein G3P; 24.1 69 0.0024 20.0 2.8 26 309-334 33-59 (65)
24 3ie4_A GRAM-negative binding p 23.9 1.2E+02 0.0041 21.4 4.5 38 312-349 26-67 (107)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.8e-65 Score=468.54 Aligned_cols=323 Identities=29% Similarity=0.474 Sum_probs=264.0
Q ss_pred CCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccC-C-----CCCCCchHHHHHHHHhccCCCCCCCCcccccccc
Q 017509 14 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD-I-----PKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 87 (370)
Q Consensus 14 ~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~-~-----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 87 (370)
..++||.|+||||||||+||+|+++|+|++++....... . .....++.++|..|++.|+...
T Consensus 6 ~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~------------ 73 (367)
T 2y6e_A 6 PGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGR------------ 73 (367)
T ss_dssp TTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSS------------
T ss_pred CCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCC------------
Confidence 345999999999999999999999999999998643211 1 1224578999999999997432
Q ss_pred cCCCCCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCC-CCCccccccccccchhhhhh
Q 017509 88 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTS-INGANTALVSLAEEDEWETV 166 (370)
Q Consensus 88 ~~~~~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 166 (370)
...++|..|+.+++...+.| .++.||||+|||..||+.|++++.+....+.. ............+...|...
T Consensus 74 --~~~i~P~~~~~~l~~~~~~f-----~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~ 146 (367)
T 2y6e_A 74 --DAHVAPRMFKTQVGRFAPQF-----SGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENH 146 (367)
T ss_dssp --CSEECCHHHHHHHHHHCGGG-----CSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHH
T ss_pred --CCCcCHHHHHHHHHHhhhhc-----CCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHH
Confidence 35689999999999988876 78899999999999999999997554332211 00111111112233445444
Q ss_pred CCCCCccccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCC-----------------cccCHHH
Q 017509 167 GPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSE-----------------AVHTIED 228 (370)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~-----------------~~~sl~~ 228 (370)
...+. ++|.++|.|++.+.++| .|++.+.+.++|+.|+|+||.. ...+|++
T Consensus 147 ~~~~~-----------s~i~~~F~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~ 215 (367)
T 2y6e_A 147 RLRND-----------SVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRD 215 (367)
T ss_dssp HHHCC-----------SHHHHHHCEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHH
T ss_pred HHhcC-----------CccccccCcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHH
Confidence 32222 46999999999999999 8999999999999999999854 2469999
Q ss_pred HHHhcCCCceecC---CCccccCCCcceeeeEEEeecccCcceEEEEeeEEeCCCCeeccCcccccCc-ccccCcccccC
Q 017509 229 ALRLFSAPENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVT 304 (370)
Q Consensus 229 ~l~~~~~~e~~~~---~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~p~-~l~l~~~~~~~ 304 (370)
+|+.|+.+|.+++ +.|+.| +.++.+.++.+|.++|++|+|||+||.++.....|+.+.|.||. .|||.+|+...
T Consensus 216 ~L~~f~~~E~l~~~~~~~C~~C--~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~ 293 (367)
T 2y6e_A 216 CIELFTTMETLGEHDPWYCPNC--KKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNL 293 (367)
T ss_dssp HHHHHTSCEECCC-CCEEETTT--TEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCS
T ss_pred HHHHhcccccCCCCCCccCCCC--CCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCC
Confidence 9999999999986 678888 56678999999999999999999999999777899999999997 69999987543
Q ss_pred CCCCCccEEEEEEEEeecCCCCCceEEEEEEcC-CCCeEEEeCCcceeeccccccCCCcEEEEEEeC
Q 017509 305 PSAEGRKYELVATVTHHGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 370 (370)
Q Consensus 305 ~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~rv 370 (370)
......|+|+|||+|.|. .++|||+||+|.. +++||+|||+.|+++++++|...+||||||+|+
T Consensus 294 -~~~~~~Y~L~avv~H~G~-~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~ 358 (367)
T 2y6e_A 294 -SARPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRR 358 (367)
T ss_dssp -SSCCCEEEEEEEEEEECS-SSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEEC
T ss_pred -CCCCceEEEEEEeecCCC-CCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEc
Confidence 345678999999999998 8999999999997 789999999999999999999999999999985
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=2.9e-64 Score=466.27 Aligned_cols=322 Identities=31% Similarity=0.459 Sum_probs=261.7
Q ss_pred CCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhcc-CC-----CCCCCchHHHHHHHHhccCCCCCCCCccccccccc
Q 017509 15 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR-DI-----PKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLD 88 (370)
Q Consensus 15 ~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~-~~-----~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 88 (370)
.++||.|+||||||||+||+|+++|+|++++...... .. .....++.+.|..+++.|+...
T Consensus 61 g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~------------- 127 (396)
T 2gfo_A 61 ALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQ------------- 127 (396)
T ss_dssp TCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSC-------------
T ss_pred CcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCC-------------
Confidence 4599999999999999999999999999999764211 11 1224568888999998887432
Q ss_pred CCCCCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCC-CccccccccccchhhhhhC
Q 017509 89 IGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSIN-GANTALVSLAEEDEWETVG 167 (370)
Q Consensus 89 ~~~~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 167 (370)
...++|..|+.+++...+.| .++.||||+|||..||+.|++++.+......... ..........++..|....
T Consensus 128 -~~~i~P~~f~~~l~~~~~~f-----~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~ 201 (396)
T 2gfo_A 128 -YRYISPKDFKITIGKINDQF-----AGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHK 201 (396)
T ss_dssp -EEEECCHHHHHHHHHHCGGG-----SSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHHHH
T ss_pred -CceECHHHHHHHHHHhchhh-----cCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHHhh
Confidence 34589999999999988776 7889999999999999999999854322111000 0000111122334454432
Q ss_pred CCCCccccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecC---CC
Q 017509 168 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YR 243 (370)
Q Consensus 168 ~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~---~~ 243 (370)
..+ .++|.++|.|++.+.++| .|+..+.+.++|+.|+|+||..+..+|+++|+.|+.+|.++| +.
T Consensus 202 ~~~-----------~s~I~~lF~G~l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~ 270 (396)
T 2gfo_A 202 QLN-----------ESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFY 270 (396)
T ss_dssp HHC-----------CSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEE
T ss_pred hcc-----------CCccchhhCcEEEEEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcccc
Confidence 222 246999999999999999 899999999999999999998878899999999999999987 67
Q ss_pred ccccCCCcceeeeEEEeecccCcceEEEEeeEEeCCCCeeccCcccccCc-ccccCcccccCCCCCCccEEEEEEEEeec
Q 017509 244 TSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTPSAEGRKYELVATVTHHG 322 (370)
Q Consensus 244 c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~p~-~l~l~~~~~~~~~~~~~~Y~L~~vi~H~G 322 (370)
|+.| +..+.+.++.+|.++|++|+|||+||.+++....|+.+.|.||. .|||.+|+... ......|+|+|||+|.|
T Consensus 271 C~~C--~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~-~~~~~~Y~L~avv~H~G 347 (396)
T 2gfo_A 271 CSHC--RARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGP-KNNLKKYNLFSVSNHYG 347 (396)
T ss_dssp ETTT--TEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSC-CSSCCCBEEEEEEEEES
T ss_pred cCCc--ccccceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccccccCC-CCCCceEEEEEEEEecC
Confidence 8887 56668999999999999999999999999777899999999995 69999987542 33467899999999999
Q ss_pred CCCCCceEEEEEEcC-CCCeEEEeCCcceeeccccccCCCcEEEEEEeC
Q 017509 323 RDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 370 (370)
Q Consensus 323 ~~~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~rv 370 (370)
+ +++|||+||+|.. +++||+|||+.|++++.++|...+||||||+|+
T Consensus 348 ~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~ 395 (396)
T 2gfo_A 348 G-LDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSL 395 (396)
T ss_dssp C-TTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC
T ss_pred C-CCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEc
Confidence 4 9999999999986 689999999999999999999999999999986
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=3.7e-63 Score=453.60 Aligned_cols=324 Identities=30% Similarity=0.427 Sum_probs=265.5
Q ss_pred CCCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccC----CCCCCCchHHHHHHHHhccCCCCCCCCccccccccc
Q 017509 13 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD----IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLD 88 (370)
Q Consensus 13 ~~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 88 (370)
....+||.|+||||||||+||+|+++|+||+++++..... ......++.++|..+++.++.. .
T Consensus 6 ~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-------------~ 72 (348)
T 3nhe_A 6 AQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTS-------------S 72 (348)
T ss_dssp CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTC-------------C
T ss_pred CCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcC-------------C
Confidence 3445999999999999999999999999999988643221 1234567899999999998742 2
Q ss_pred CCCCCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCc-cccccccccchhhhhhC
Q 017509 89 IGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGA-NTALVSLAEEDEWETVG 167 (370)
Q Consensus 89 ~~~~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 167 (370)
....++|..|..++....+.| .+++||||+|||..||+.|++++.+........... ............|....
T Consensus 73 ~~~~~~p~~~~~~l~~~~~~f-----~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (348)
T 3nhe_A 73 PNDVVSPSEFKTQIQRYAPRF-----VGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRKYL 147 (348)
T ss_dssp TTCEECCHHHHHHHHHHSGGG-----SSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHhhhhh-----CCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHH
Confidence 356689999999999998876 788999999999999999999986543322111111 11111112233444433
Q ss_pred CCCCccccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCc--ccCHHHHHHhcCCCceecC---
Q 017509 168 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEA--VHTIEDALRLFSAPENLEG--- 241 (370)
Q Consensus 168 ~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~--~~sl~~~l~~~~~~e~~~~--- 241 (370)
... .++|.++|.|++.+.++| .|+..+.+.++|+.|+|++|... ..+|+++|+.++.+|.++|
T Consensus 148 ~~~-----------~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~ 216 (348)
T 3nhe_A 148 ERE-----------DSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEK 216 (348)
T ss_dssp TTC-----------CCHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGC
T ss_pred hhc-----------CCccccccceEEEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCc
Confidence 332 246999999999999999 89999999999999999998654 4699999999999999987
Q ss_pred CCccccCCCcceeeeEEEeecccCcceEEEEeeEEeCCCCeeccCcccccCc-ccccCcccccCCCCCCccEEEEEEEEe
Q 017509 242 YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTPSAEGRKYELVATVTH 320 (370)
Q Consensus 242 ~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~p~-~l~l~~~~~~~~~~~~~~Y~L~~vi~H 320 (370)
+.|+.| +..+.+.++..|.++|++|+|||+||.++.....|+.+.|.||. .|||.+++. .......|+|+|||+|
T Consensus 217 ~~C~~C--~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~--~~~~~~~Y~L~avv~H 292 (348)
T 3nhe_A 217 PTCCRC--RGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFAS--ENTNHAVYNLYAVSNH 292 (348)
T ss_dssp CEETTT--TEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBC--TTCCCCEEEEEEEEEE
T ss_pred eECCCC--CCcccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcC--CCCCCCcEEEEEEEEc
Confidence 678888 55668999999999999999999999988878899999999994 699999874 3455678999999999
Q ss_pred ecCCCCCceEEEEEEcC-CCCeEEEeCCcceeeccccccCCCcEEEEEEeC
Q 017509 321 HGRDPSKGHYTADARYF-NDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 370 (370)
Q Consensus 321 ~G~~~~~GHY~a~vr~~-~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~rv 370 (370)
.|+ ..+|||+||+|.. +++||+|||+.|++++.++|...+||||||+|+
T Consensus 293 ~G~-~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~ 342 (348)
T 3nhe_A 293 SGT-TMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELA 342 (348)
T ss_dssp EEC-SSCEEEEEEEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEEC
T ss_pred cCC-CCCcccEEEEccCCCCcEEEEeCCCceECCHHHcCCCCceEEEEEec
Confidence 996 8999999999995 789999999999999999999999999999995
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=3.1e-63 Score=455.38 Aligned_cols=320 Identities=30% Similarity=0.433 Sum_probs=253.7
Q ss_pred CCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhcc---CCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCC
Q 017509 16 PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR---DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRP 92 (370)
Q Consensus 16 p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~---~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (370)
-+||.|+||||||||+||+|+++|+|++++.+.... .......++.++|..++..|+... ....
T Consensus 3 ~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~-------------~~~~ 69 (355)
T 3i3t_A 3 HVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPD-------------SCEA 69 (355)
T ss_dssp CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCS-------------SCCC
T ss_pred CcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCC-------------CCCc
Confidence 489999999999999999999999999999764321 112334579999999999998642 2356
Q ss_pred CChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccc----------------cccc
Q 017509 93 FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANT----------------ALVS 156 (370)
Q Consensus 93 i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~----------------~~~~ 156 (370)
++|..|..++++..+.| .++.||||+|||..||+.|++++............... ....
T Consensus 70 v~p~~~~~~l~~~~~~f-----~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (355)
T 3i3t_A 70 VNPTRFRAVFQKYVPSF-----SGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDD 144 (355)
T ss_dssp BCCHHHHHHHHHHCGGG-----CSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CCHH
T ss_pred ccHHHHHHHHHHhChhh-----CCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCCHH
Confidence 99999999999998876 78899999999999999999998554332111000000 0000
Q ss_pred cccchhhhhhCCCCCccccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCC----cccCHHHHHH
Q 017509 157 LAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSE----AVHTIEDALR 231 (370)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~----~~~sl~~~l~ 231 (370)
..+...|...... ..++|.++|.|++.+.++| .|+..+.+.++|+.|+|++|.. +..+|+++|+
T Consensus 145 ~~~~~~~~~~~~~-----------~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~L~ 213 (355)
T 3i3t_A 145 DRANLMWKRYLER-----------EDSKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFN 213 (355)
T ss_dssp HHHHHHHHHHHHH-----------CCSHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHHHH
T ss_pred HHHHHHHHHhhhc-----------cCCcccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHHHH
Confidence 1111223222221 2346999999999999999 8999999999999999999874 3569999999
Q ss_pred hcCCCceecC---CCccccCCCcceeeeEEEeecccCcceEEEEeeEEeCCCCeeccCcccccCc-ccccCcccccCCCC
Q 017509 232 LFSAPENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTPSA 307 (370)
Q Consensus 232 ~~~~~e~~~~---~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~p~-~l~l~~~~~~~~~~ 307 (370)
.++.+|.+++ +.|+.|+ .++.+.++..|.++|++|+|||+||.++.+...|+...|.||. .||+.+++. ...
T Consensus 214 ~~~~~e~l~~~n~~~C~~C~--~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~--~~~ 289 (355)
T 3i3t_A 214 LFTKEEELESENAPVCDRCR--QKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFAS--DKA 289 (355)
T ss_dssp HHHCCEEECGGGCCCCSSSC--CCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC-----
T ss_pred HhCCccccCCCCCeeCCCCC--CccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhcc--CCC
Confidence 9999999987 8898884 4558999999999999999999999999888899999999995 599998874 344
Q ss_pred CCccEEEEEEEEeecCCCCCceEEEEEEcCCCCeEEEeCCcceeeccccccCCCcEEEEEEeC
Q 017509 308 EGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQV 370 (370)
Q Consensus 308 ~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~rv 370 (370)
....|+|+|||+|.|+ .++|||+||+|. ++.||+|||+.|++++.++|...+||||||+|+
T Consensus 290 ~~~~Y~L~avv~H~G~-~~~GHY~~~~~~-~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~ 350 (355)
T 3i3t_A 290 GSPVYQLYALCNHSGS-VHYGHYTALCRC-QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLM 350 (355)
T ss_dssp -CCEEEEEEEEEEEEE-TTEEEEEEEEEE-TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC
T ss_pred CCcceEEEEEEEecCC-CCCCeEEEEEEc-CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEec
Confidence 5678999999999996 999999999999 556999999999999999999999999999996
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=6.9e-61 Score=437.50 Aligned_cols=292 Identities=23% Similarity=0.363 Sum_probs=239.8
Q ss_pred CCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCCC
Q 017509 14 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPF 93 (370)
Q Consensus 14 ~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 93 (370)
..++||.|+||||||||+||+|+++|+||+++...... ......++.++|+.++..|+.. ..++
T Consensus 4 ~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~-~~~~~~~~~~~l~~lf~~l~~~---------------~~~~ 67 (353)
T 1nb8_A 4 TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE-GDDSSKSVPLALQRVFYELQHS---------------DKPV 67 (353)
T ss_dssp SSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCT-TSCTTTCHHHHHHHHHHHHHHC---------------SSCB
T ss_pred CCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCC-CCcccccHHHHHHHHHHHHhhc---------------CCCC
Confidence 45699999999999999999999999999999765321 2234567899999999988632 2457
Q ss_pred ChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCcc
Q 017509 94 SPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSA 173 (370)
Q Consensus 94 ~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (370)
.|..+...+.. +. |.++.||||+|||..||+.|++++....
T Consensus 68 ~~~~l~~~~~~--~~-----~~~~~QqDA~EFl~~LLd~L~~~~~~~~-------------------------------- 108 (353)
T 1nb8_A 68 GTKKLTKSFGW--ET-----LDSFMQHDVQELCRVLLDNVENKMKGTC-------------------------------- 108 (353)
T ss_dssp CCHHHHHHHTC--CB-----TTTTTTSCHHHHHHHHHHHHHHHTTTST--------------------------------
T ss_pred CCHHHHhhcCC--CC-----CCcccchhHHHHHHHHHHHHHHHhcCCC--------------------------------
Confidence 78888777642 33 4788999999999999999998762100
Q ss_pred ccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecCCCccccCCCcc
Q 017509 174 VTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGV 252 (370)
Q Consensus 174 ~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~~~c~~c~~~~~ 252 (370)
..++|.++|.|++.+.++| .|+..+.+.++|+.|+|++|. ..+|.++|..|+.+|.+++..+..|.+++.
T Consensus 109 -------~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i~~--~~~l~~~L~~~~~~E~l~~~~~~~C~~c~~ 179 (353)
T 1nb8_A 109 -------VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG--KKNIFESFVDYVAVEQLDGDNKYDAGEHGL 179 (353)
T ss_dssp -------TTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECCTT--CSBHHHHHHHHTCCEEECTTTCEECGGGCE
T ss_pred -------ccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEEEEECC--CcchHHHHHHhhCccccCCCccccCCcCcc
Confidence 1235999999999999999 899999999999999999974 368999999999999999743333333346
Q ss_pred eeeeEEEeecccCcceEEEEeeEEeCC--CCeeccCcccccCcccccCcccccCCCCCCccEEEEEEEEeecCCCCCceE
Q 017509 253 VTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHY 330 (370)
Q Consensus 253 ~~~~~~~~i~~lP~~L~i~l~R~~~~~--~~~~K~~~~v~~p~~l~l~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY 330 (370)
+.+.++.+|.++|++|+|||+||.++. +...|+.+.|.||..|||.+|+...+......|+|+|||+|.|. .++|||
T Consensus 180 ~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY 258 (353)
T 1nb8_A 180 QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHY 258 (353)
T ss_dssp ECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEESS-TTCCCE
T ss_pred EeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhhhhcccCCCCCceEEEEEEEEEeCC-CCCcEE
Confidence 678999999999999999999999874 35689999999999999999987655566789999999999999 899999
Q ss_pred EEEEEcC-CCCeEEEeCCcceeeccccccC---------------CCcEEEEEEeC
Q 017509 331 TADARYF-NDQWLHFDDASVTAIGTSKVLH---------------DQAYVLFYKQV 370 (370)
Q Consensus 331 ~a~vr~~-~~~W~~~nD~~V~~v~~~~v~~---------------~~~yil~Y~rv 370 (370)
+||+|.. +++||+|||+.|+++++++|.. .+||||||+|+
T Consensus 259 ~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~ 314 (353)
T 1nb8_A 259 VVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE 314 (353)
T ss_dssp EEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEET
T ss_pred EEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEEC
Confidence 9999974 7899999999999999988763 58999999985
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=1.1e-61 Score=452.28 Aligned_cols=322 Identities=25% Similarity=0.345 Sum_probs=250.3
Q ss_pred CCCCCCCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccC-C---CCCCCchHHHHHHHHhccCCCCCCCCccccc
Q 017509 9 KSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD-I---PKAGYPTLTAFVGFVSDFDTPSGGSSKKKNI 84 (370)
Q Consensus 9 ~~~~~~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~-~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 84 (370)
.......|+||.|+||||||||+||+|+++|+|++++.+..... . .....++.++|..|+..|+.
T Consensus 7 ~~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~----------- 75 (404)
T 2ayn_A 7 LASAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDK----------- 75 (404)
T ss_dssp ----CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHhccCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhc-----------
Confidence 33456788999999999999999999999999999998754321 1 12245789999999998863
Q ss_pred ccccCCCCCChHHHHHHHhhcCCCCCCC-CCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhh
Q 017509 85 SVLDIGRPFSPSMFEAVLKNFTPDVPNS-ISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEW 163 (370)
Q Consensus 85 ~~~~~~~~i~p~~~~~~l~~~~~~~~~~-~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (370)
....+.|..|+.+++...+.|... .+.++.||||+|||..||+.|++++....... ..+......|
T Consensus 76 ----~~~~v~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~---------~~e~~~~~~~ 142 (404)
T 2ayn_A 76 ----TSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDS---------VKETDSSSAS 142 (404)
T ss_dssp ----HCSEECCHHHHHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC--------------------
T ss_pred ----CCCcCChHHHHHHHHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCc---------ccccchhhhh
Confidence 136699999999999988887421 12468999999999999999998873321100 0000111222
Q ss_pred hhhCCCCCccccccccCCcchhhhccceEEEeEEEe-cCCCcC--eeecCCEEeeeecCCCcccCHHHHHHhcCCCceec
Q 017509 164 ETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKAS--ATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLE 240 (370)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~--~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~ 240 (370)
.... ....++|.++|+|++.+.++| .|+..+ .+.++|+.|+|+|+.. ..+|+++|+.++. +.+.
T Consensus 143 ~~~~-----------~~~~s~i~~~F~G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~-~~~l~~~L~~~~~-e~l~ 209 (404)
T 2ayn_A 143 AATP-----------SKKKSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQE-VKYLFTGLKLRLQ-EEIT 209 (404)
T ss_dssp ------------------CCHHHHHTCEEEEEEEEESSSCCCCCBCCEEEESSEEEECSSS-CCBHHHHHHHTTE-ECCC
T ss_pred hhhc-----------cccCchhhhhccEEEEEEEEecCCCCccCceeeccCceEEeecCCC-cccHHHHHHHhcc-ccee
Confidence 2221 122357999999999999999 888874 7999999999999854 3589999999886 4455
Q ss_pred CCCccccCCCcceeeeEEEeecccCcceEEEEeeEEeCC--CCeeccCcccccCcccccCcccccC--------------
Q 017509 241 GYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVT-------------- 304 (370)
Q Consensus 241 ~~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~--~~~~K~~~~v~~p~~l~l~~~~~~~-------------- 304 (370)
+.|+.|+ ....+.++.+|.++|+||+|||+||.++. +...|+.++|.||..|||.+|+...
T Consensus 210 -~~c~~c~--~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~ 286 (404)
T 2ayn_A 210 -KQSPTLQ--RNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKD 286 (404)
T ss_dssp -CEETTTT--EECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTC
T ss_pred -ecchhhC--CccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhh
Confidence 7888885 44578999999999999999999999884 3568999999999999999887531
Q ss_pred ----------------------------------CCCCCccEEEEEEEEeecCCCCCceEEEEEEcCCCCeEEEeCCcce
Q 017509 305 ----------------------------------PSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVT 350 (370)
Q Consensus 305 ----------------------------------~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~~V~ 350 (370)
.......|+|+|||+|.|.++++|||+||+|..+++||+|||+.|+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~ 366 (404)
T 2ayn_A 287 LEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVS 366 (404)
T ss_dssp TTC----------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCC
T ss_pred hhcccchhhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccce
Confidence 0123588999999999997799999999999978899999999999
Q ss_pred eeccccccCCC-------cEEEEEEeC
Q 017509 351 AIGTSKVLHDQ-------AYVLFYKQV 370 (370)
Q Consensus 351 ~v~~~~v~~~~-------~yil~Y~rv 370 (370)
+++.++|.... ||||||+|+
T Consensus 367 ~v~~~~v~~~~~g~~~~~aYiLfY~r~ 393 (404)
T 2ayn_A 367 IVTPEDILRLSGGGDWHIAYVLLYGPR 393 (404)
T ss_dssp CBCHHHHGGGGSSSSSCEEEEEEEECC
T ss_pred ecCHHHHHhhhCCCCCceEEEEEEEec
Confidence 99999998655 999999985
No 7
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=7.6e-60 Score=440.74 Aligned_cols=299 Identities=23% Similarity=0.312 Sum_probs=240.3
Q ss_pred CCCCCCCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCCCC--------CCchHHHHHHHHhccCCCCCCCCc
Q 017509 9 KSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKA--------GYPTLTAFVGFVSDFDTPSGGSSK 80 (370)
Q Consensus 9 ~~~~~~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~~~--------~~~~~~~l~~l~~~~~~~~~~~~~ 80 (370)
.......|+||.|+||||||||+||+|+++|+||+++........... ..++.++|..|+..|+..
T Consensus 17 ~~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~------ 90 (415)
T 1vjv_A 17 VQQFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNK------ 90 (415)
T ss_dssp --CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC------
T ss_pred ccccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcC------
Confidence 344566789999999999999999999999999999987643322111 337999999999998742
Q ss_pred ccccccccCCCCCChHHHHHHHhhcCCCCCCCCCC--CCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccc
Q 017509 81 KKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISG--RPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLA 158 (370)
Q Consensus 81 ~~~~~~~~~~~~i~p~~~~~~l~~~~~~~~~~~~~--~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (370)
....++|..|..+++...+.|...... ++.||||+|||..||+.|++++..
T Consensus 91 --------~~~~v~p~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~------------------- 143 (415)
T 1vjv_A 91 --------SFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD------------------- 143 (415)
T ss_dssp ---------CCEECCHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH-------------------
T ss_pred --------CCCccCHHHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc-------------------
Confidence 236699999999999988876321111 789999999999999999998732
Q ss_pred cchhhhhhCCCCCccccccccCCcchhhhccceEEEeEEEe-cCCCcC--eeecCCEEeeeecCCCcccCHHHHHHhcCC
Q 017509 159 EEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKAS--ATVQPFLLLHLDIYSEAVHTIEDALRLFSA 235 (370)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~--~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~ 235 (370)
++|.++|+ ++.+.++| .|+..+ .+.++|+.|+|+|+.. ..+|+++|..++.
T Consensus 144 ------------------------~~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~-~~~l~~~L~~~~~ 197 (415)
T 1vjv_A 144 ------------------------KFSEDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHISGT-TNFMRNGLLEGLN 197 (415)
T ss_dssp ------------------------HHHTTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTT-CCBHHHHHHHHHE
T ss_pred ------------------------chHHHHHH-hheEEEEECCCCCCccccccccceeeeeccccc-cchHHHHHHHHhh
Confidence 24889999 99999999 888775 5899999999999854 3589999999886
Q ss_pred CceecCCCccccCCCcceeeeEEEeecccCcceEEEEeeEEeCCC--CeeccCcccccCcccccCcccccC---------
Q 017509 236 PENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVT--------- 304 (370)
Q Consensus 236 ~e~~~~~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~--~~~K~~~~v~~p~~l~l~~~~~~~--------- 304 (370)
. .+. +.|+.|++ ...+.++.+|.++|+||+|||+||.++.. ...|+.+.|.||..|||.+|+...
T Consensus 198 e-~i~-~~c~~c~~--~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r 273 (415)
T 1vjv_A 198 E-KIE-KRSDLTGA--NSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVR 273 (415)
T ss_dssp E-C----------C--CCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHH
T ss_pred h-hhh-hcccccCC--cccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHHhcChhhhhhhhhhH
Confidence 4 444 78998854 44789999999999999999999999853 469999999999999999887431
Q ss_pred -----------------------------------------------------------------CCCCCccEEEEEEEE
Q 017509 305 -----------------------------------------------------------------PSAEGRKYELVATVT 319 (370)
Q Consensus 305 -----------------------------------------------------------------~~~~~~~Y~L~~vi~ 319 (370)
.......|+|+|||+
T Consensus 274 ~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~ 353 (415)
T 1vjv_A 274 DELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVIT 353 (415)
T ss_dssp HHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEE
T ss_pred HHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEE
Confidence 012457899999999
Q ss_pred eecCCCCCceEEEEEEc--CCCCeEEEeCCcceeeccccccCCC-------cEEEEEEeC
Q 017509 320 HHGRDPSKGHYTADARY--FNDQWLHFDDASVTAIGTSKVLHDQ-------AYVLFYKQV 370 (370)
Q Consensus 320 H~G~~~~~GHY~a~vr~--~~~~W~~~nD~~V~~v~~~~v~~~~-------~yil~Y~rv 370 (370)
|.|.++.+|||+||+|. .+++||+|||+.|++++.++|.... ||||||+|+
T Consensus 354 H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~ 413 (415)
T 1vjv_A 354 HQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGF 413 (415)
T ss_dssp EESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEET
T ss_pred ecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEec
Confidence 99977999999999998 5789999999999999999998755 999999986
No 8
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=1.5e-58 Score=439.21 Aligned_cols=314 Identities=25% Similarity=0.390 Sum_probs=250.3
Q ss_pred CCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhcc---CCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCC
Q 017509 15 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR---DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGR 91 (370)
Q Consensus 15 ~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~---~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 91 (370)
..+||.|+||||||||+||+|+++|+|+++++..... .......++.++|..++..++........ ......
T Consensus 140 G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~-----~~~~~~ 214 (476)
T 3mhs_A 140 GLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQA-----SSSSTS 214 (476)
T ss_dssp CCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC-------------C
T ss_pred CCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhccccccc-----cccccc
Confidence 3499999999999999999999999999999854321 22344678999999999988754322110 112223
Q ss_pred CCChHHHHHHHh---hcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCC
Q 017509 92 PFSPSMFEAVLK---NFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGP 168 (370)
Q Consensus 92 ~i~p~~~~~~l~---~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (370)
.+.|..+...+. +..+.| .+++||||+|||.+||+.|++++.......... +...
T Consensus 215 ~~~~~~~~~~l~~~~~~~~~f-----~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~~~---------------~~~~-- 272 (476)
T 3mhs_A 215 TNRQTGFIYLLTCAWKINQNL-----AGYSQQDAHEFWQFIINQIHQSYVLDLPNAKEV---------------SRAN-- 272 (476)
T ss_dssp CCSCHHHHHHHHHHHHHCGGG-----SSSSCEEHHHHHHHHHHHHHHHHHHHCCC----------------------C--
T ss_pred ccCcchHHHHHHHHHHhcccc-----CCCCCcCHHHHHHHHHHHHHHHHhhcccccccc---------------cccc--
Confidence 456666665554 666665 788999999999999999999986543311000 0000
Q ss_pred CCCccccccccCCcchhhhccceEEEeEEEe-cCCCcCe-eecCCEEeeeecCCCcccCHHHHHHhcCCCceecC--CCc
Q 017509 169 KNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASA-TVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG--YRT 244 (370)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~-~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~--~~c 244 (370)
.....++|.++|.|++.+.++| .|+..+. +.++|+.|+|+++. ..+|+++|+.|+.+|.+++ +.|
T Consensus 273 ---------~~~~~s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~~--~~sl~~~L~~~~~~E~l~~~~~~C 341 (476)
T 3mhs_A 273 ---------NKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIKD--KKKLYECLDSFHKKEQLKDFNYHC 341 (476)
T ss_dssp ---------CCSCCSHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCTT--CCBHHHHHHHHHCCEECSSCCCEE
T ss_pred ---------cccCCCcceeecceEEEEEEEECCCCCeeCCcccchhhhccchhh--hhHHHHHHHHhcChhhccCCCCcC
Confidence 0112357999999999999999 8888764 58999999999964 4699999999999999986 778
Q ss_pred cccCCCcceeeeEEEeecccCcceEEEEeeEEeC-CCCeeccCcccccCcccccCcccccCCC--------CCCccEEEE
Q 017509 245 SSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG-SQGSTKLHKSVRFPLQLVLGRDLLVTPS--------AEGRKYELV 315 (370)
Q Consensus 245 ~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~-~~~~~K~~~~v~~p~~l~l~~~~~~~~~--------~~~~~Y~L~ 315 (370)
+.| +....+.++.+|.++|++|+|||+||.++ .+...|+.+.|.||..|||.+|+..... .....|+|+
T Consensus 342 ~~C--~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~ 419 (476)
T 3mhs_A 342 GEC--NSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELI 419 (476)
T ss_dssp TTT--TEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEEEE
T ss_pred Ccc--CCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCeeechhhcCcccccccccccCCCCCcEEEE
Confidence 888 45568999999999999999999999987 4567899999999999999998865432 356789999
Q ss_pred EEEEeecCCCCCceEEEEEEcCCCCeEEEeCCcceeeccccccCCCcEEEEEEe
Q 017509 316 ATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 369 (370)
Q Consensus 316 ~vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~r 369 (370)
|||+|.|+ .++|||+||+|..+++||+|||+.|+++++++|...+||||||+|
T Consensus 420 avv~H~G~-~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r 472 (476)
T 3mhs_A 420 GIVSHKGT-VNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTI 472 (476)
T ss_dssp EEEEEEEC-SSSEEEEEEEECTTSCEEEEETTEEEEECHHHHTTSCEEEEEEEE
T ss_pred EEEEeCCC-CCCCceEEEEECCCCcEEEEeCCceEECCHHHhccCCcEEEEEEE
Confidence 99999997 999999999998788999999999999999999999999999997
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=1e-57 Score=437.09 Aligned_cols=290 Identities=23% Similarity=0.373 Sum_probs=241.5
Q ss_pred CCCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCCCCCCchHHHHHHHHhccCCCCCCCCcccccccccCCCC
Q 017509 13 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRP 92 (370)
Q Consensus 13 ~~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (370)
...++||.|+||||||||+||+|+++|+||+++..... .......++.++|+.++..|+.. ..+
T Consensus 172 ~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~-~~~~~~~~~~~~l~~lf~~l~~~---------------~~~ 235 (522)
T 2f1z_A 172 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPT-EGDDSSKSVPLALQRVFYELQHS---------------DKP 235 (522)
T ss_dssp TTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCC-CSSCTTTCHHHHHHHHHHHHHHC---------------SSC
T ss_pred cCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccc-cCCcccchHHHHHHHHHHHHhcC---------------CCc
Confidence 45569999999999999999999999999999976532 22234567899999999988632 234
Q ss_pred CChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhhhhhCCCCCc
Q 017509 93 FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKS 172 (370)
Q Consensus 93 i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (370)
+.|..|...++ .+. |.++.||||+||+..||+.|++++....
T Consensus 236 ~~~~~l~~~~~--~~~-----~~~~~QqDa~Efl~~LLd~L~~~l~~~~------------------------------- 277 (522)
T 2f1z_A 236 VGTKKLTKSFG--WET-----LDSFMQHDVQELCRVLLDNVENKMKGTC------------------------------- 277 (522)
T ss_dssp BCCTTHHHHTC--CCT-----TTSSTTSCHHHHHHHHHHHHHHHHTTST-------------------------------
T ss_pred cCcHHHHhhcC--Ccc-----CCCcccccHHHHHHHHHHHHHhhccCCc-------------------------------
Confidence 67777776653 123 4788999999999999999999873110
Q ss_pred cccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecC---CCccccC
Q 017509 173 AVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTG 248 (370)
Q Consensus 173 ~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~---~~c~~c~ 248 (370)
..++|.++|.|++.+.++| .|+..+.+.++|+.|+|+|+. ..+|.++|..|+..|.+++ +.|++|
T Consensus 278 --------~~s~i~~lF~G~~~s~i~C~~C~~~s~~~e~f~~LsL~i~~--~~~l~~~L~~~~~~E~l~~~n~~~C~~c- 346 (522)
T 2f1z_A 278 --------VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKG--KKNIFESFVDYVAVEQLDGDNKYDAGEH- 346 (522)
T ss_dssp --------TTTHHHHHHCEEEEEEECCSSSCCCCCEEEEESCEEECCTT--CCBHHHHHHHHTCEEEECTTSCBCCGGG-
T ss_pred --------cccchhhheeEEEEEEEEcCCCCceeeeeeeeEEEEEEeCC--cccchHHHHHhhceeecCCcceeecCcC-
Confidence 1135999999999999999 899999999999999999974 4689999999999999997 455555
Q ss_pred CCcceeeeEEEeecccCcceEEEEeeEEeCC--CCeeccCcccccCcccccCcccccCCCCCCccEEEEEEEEeecCCCC
Q 017509 249 NAGVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPS 326 (370)
Q Consensus 249 ~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~--~~~~K~~~~v~~p~~l~l~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~ 326 (370)
+.+.+.++..|.++|++|+|||+||.++. +...|+.+.|.||..|||.+|+...+......|+|+|||+|.|. .+
T Consensus 347 --~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~ 423 (522)
T 2f1z_A 347 --GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NH 423 (522)
T ss_dssp --CSBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEECS-SS
T ss_pred --CccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecchhhhccccCCCCcEEEEEEEEEeccc-CC
Confidence 45688999999999999999999999884 45789999999999999999987655556789999999999999 79
Q ss_pred CceEEEEEEc-CCCCeEEEeCCcceeeccccccC---------------CCcEEEEEEeC
Q 017509 327 KGHYTADARY-FNDQWLHFDDASVTAIGTSKVLH---------------DQAYVLFYKQV 370 (370)
Q Consensus 327 ~GHY~a~vr~-~~~~W~~~nD~~V~~v~~~~v~~---------------~~~yil~Y~rv 370 (370)
+|||+||+|. .+++||+|||+.|++++.++|.. .+||||||+|.
T Consensus 424 ~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~ 483 (522)
T 2f1z_A 424 GGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE 483 (522)
T ss_dssp CSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEET
T ss_pred CceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEEC
Confidence 9999999997 47899999999999999988763 57999999984
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.8e-57 Score=450.89 Aligned_cols=305 Identities=21% Similarity=0.347 Sum_probs=248.7
Q ss_pred CCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhc----cCCCCCCCchHHHHHHHHhccCCCCCCCCcccc------
Q 017509 14 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRT----RDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKN------ 83 (370)
Q Consensus 14 ~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~------ 83 (370)
+..+||.|+||||||||+||+|+++|+|+++++.... ........++.+.|.+|+..|+....+......
T Consensus 342 ~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~~~~~ 421 (854)
T 3ihp_A 342 PGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGDGERV 421 (854)
T ss_dssp TTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC--------------
T ss_pred CCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccccccc
Confidence 3449999999999999999999999999999874321 123345678999999999988754322111000
Q ss_pred cccccCCCCCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccchhh
Q 017509 84 ISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEW 163 (370)
Q Consensus 84 ~~~~~~~~~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (370)
.........++|..|+.+++..++.| .+++||||+|||.+||+.|++++..
T Consensus 422 ~~~~~~~~~isP~~f~~~l~~~~~~F-----~~~~QQDA~EFl~~LLd~L~~el~~------------------------ 472 (854)
T 3ihp_A 422 PEQKEVQDGIAPRMFKALIGKGHPEF-----STNRQQDAQEFFLHLINMVERNCRS------------------------ 472 (854)
T ss_dssp -------CCBCCHHHHHHHTTTCTTT-----TSSSCCBHHHHHHHHHHHHHHTCTT------------------------
T ss_pred cccccCCCccChHHHHHHHhhhcccc-----ccccccCHHHHHHHHHHHHHHHhcc------------------------
Confidence 01113466899999999999988876 7889999999999999999987621
Q ss_pred hhhCCCCCccccccccCCcchhhhccceEEEeEEEe-cCCCcCeeecCCEEeeeecCCCc--------------------
Q 017509 164 ETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEA-------------------- 222 (370)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C-~c~~~~~~~~~~~~l~l~i~~~~-------------------- 222 (370)
.+++.++|.|.+.+.++| .|+..+.+.++|+.|+|+||...
T Consensus 473 ------------------~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~ 534 (854)
T 3ihp_A 473 ------------------SENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEE 534 (854)
T ss_dssp ------------------SCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHT
T ss_pred ------------------cCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccccccc
Confidence 023889999999999999 99999999999999999999531
Q ss_pred ----------ccCHHHHHHhcCCCceecCCCccccCCCcceeeeEEEeecccCcceEEEEeeEEeC-CCCeeccCccccc
Q 017509 223 ----------VHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG-SQGSTKLHKSVRF 291 (370)
Q Consensus 223 ----------~~sl~~~l~~~~~~e~~~~~~c~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~-~~~~~K~~~~v~~ 291 (370)
..+|+++|+.|+.+|.++++.|+.| +.++.+.++.+|.++|++|+|||+||.++ .+...|+.+.|.|
T Consensus 535 g~~~~~~~~~~~sL~dcL~~f~~~E~Le~y~C~~C--~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~F 612 (854)
T 3ihp_A 535 KMALPELVRAQVPFSSCLEAYGAPEQVDDFWSTAL--QAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEM 612 (854)
T ss_dssp TCCCCCCCCEECCHHHHHHHHHSCEEEEEEEETTT--TEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCC
T ss_pred cccccccccCCCCHHHHHHHhcCceEeeeeecccc--CCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEec
Confidence 2599999999999999999999999 56678999999999999999999999996 4567899999999
Q ss_pred CcccccCcccccCC------------------------------------------------------------------
Q 017509 292 PLQLVLGRDLLVTP------------------------------------------------------------------ 305 (370)
Q Consensus 292 p~~l~l~~~~~~~~------------------------------------------------------------------ 305 (370)
|..|||.+|+....
T Consensus 613 P~~LDl~~y~~~~~q~~E~~lp~~~~~~~~~~~~~~~~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hm 692 (854)
T 3ihp_A 613 PEELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKAPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHM 692 (854)
T ss_dssp CSEEECGGGBCCCSCTTCCBCCCC----------------CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHT
T ss_pred CCcEehHHhccCCCCCCceecccccccccccccccccCcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhcc
Confidence 99999988854200
Q ss_pred --------------------------------------------------------------------------------
Q 017509 306 -------------------------------------------------------------------------------- 305 (370)
Q Consensus 306 -------------------------------------------------------------------------------- 305 (370)
T Consensus 693 dd~di~~p~~~~~~~~~~s~~~~~~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~d~~~~~~~~~~~~ 772 (854)
T 3ihp_A 693 DDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISE 772 (854)
T ss_dssp TSCGGGSCCCCC--------------CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC---
T ss_pred CcccccccccccccccccccccccCCCCHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCcccccccccccccc
Confidence
Q ss_pred ------------------CCCCccEEEEEEEEeecCCCCCceEEEEEEcCCCCeEEEeCCcceeeccccccCCCcEEEEE
Q 017509 306 ------------------SAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFY 367 (370)
Q Consensus 306 ------------------~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y 367 (370)
......|+|+|||+|.|.+.++|||+||+|. +|+||+|||+.|+++ ++.....||||||
T Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~~GHY~~~~~~-~~~W~~~nD~~V~~~--~~~~~~~aYilfY 849 (854)
T 3ihp_A 773 GRSAADSISESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKK-EGRWVIYNDQKVCAS--EKPPKDLGYIYFY 849 (854)
T ss_dssp ---------------CCCCCCCSEEEEEEEEEEESSCSSCCEEEEEEEE-TTEEEEEETTEEEEC--SSCCTTSCSEEEE
T ss_pred cccccccccccccccCCCCCCCceEEEEEEEEeecCCCCCcCeEEEEEe-CCEEEEEECCeeEEc--cccCCCcceEEEE
Confidence 0112379999999999988999999999999 788999999999997 4556789999999
Q ss_pred EeC
Q 017509 368 KQV 370 (370)
Q Consensus 368 ~rv 370 (370)
+||
T Consensus 850 ~R~ 852 (854)
T 3ihp_A 850 QRV 852 (854)
T ss_dssp EEC
T ss_pred Eec
Confidence 997
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.97 E-value=9.8e-33 Score=241.84 Aligned_cols=230 Identities=21% Similarity=0.243 Sum_probs=150.8
Q ss_pred CCCCCcccCCchhhHHHHHHHHhCCHHHHHHHHhhhccCCC-CCCCchHHHH-HHHHhccCCCCCCCCcccccccccCCC
Q 017509 14 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIP-KAGYPTLTAF-VGFVSDFDTPSGGSSKKKNISVLDIGR 91 (370)
Q Consensus 14 ~~p~GL~N~gntCy~Ns~lQ~L~~~p~f~~~l~~~~~~~~~-~~~~~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~ 91 (370)
..|+||+|+||||||||+||+|+++|++.+.|......... .....+...| ..+++.|. . .
T Consensus 7 g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~~~~~~l~~~L~r~i~~~Lr----------------k-~ 69 (374)
T 2vhf_A 7 GKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDVEYYSETQELLRTEIVNPLR----------------I-Y 69 (374)
T ss_dssp EESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSCTTHHHHHHHHHHTTHHHHH----------------H-T
T ss_pred CCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcchhHHHHHHHHHHHHHHHHh----------------h-c
Confidence 36899999999999999999999999999999886432221 1111366677 67777774 1 6
Q ss_pred CCChHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHHHHHHHHH-HH-HhhcCCCCCCCccccccccccchhhhhhCCC
Q 017509 92 PFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDE-LL-KLQGESTSINGANTALVSLAEEDEWETVGPK 169 (370)
Q Consensus 92 ~i~p~~~~~~l~~~~~~~~~~~~~~~~QqDa~Efl~~ll~~l~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (370)
.+.|..|...|++..|+|....-.+++||||.||+..||..|... .. +... . ....
T Consensus 70 ~~~P~~~l~~LR~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s---------~-------------~~~~ 127 (374)
T 2vhf_A 70 GYVCATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRS---------A-------------GQKV 127 (374)
T ss_dssp SEECHHHHHHHHHHHHHHC--------CCCHHHHHHHHHTTTTCCCCSEEEEE---------T-------------TCCC
T ss_pred CCCcHHHHHHHHHHhHHHhcccCCCccccCHHHHHHHHHHHHhhccccccccc---------c-------------cccc
Confidence 689999999999999988655223689999999999999988632 10 0000 0 0000
Q ss_pred CCccccccccCCcchhhhccceEEEeEEEecCCCcCeeecCCEEeeeecCCCcccCHHHHHHhcCCCceecCCCccccCC
Q 017509 170 NKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGN 249 (370)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~F~~~~~~~~~C~c~~~~~~~~~~~~l~l~i~~~~~~sl~~~l~~~~~~e~~~~~~c~~c~~ 249 (370)
. .+.+.++|. +.-.. ....+...+++..+-.+.
T Consensus 128 ~-----------~~~~~q~f~------------------E~~e~-------~~~e~~~qL~e~nfl~~g----------- 160 (374)
T 2vhf_A 128 Q-----------DCYFYQIFM------------------EKNEK-------VGVPTIQQLLEWSFINSN----------- 160 (374)
T ss_dssp E-----------EESCEECCC------------------CCC---------CCCCBHHHHHHHHHHHHT-----------
T ss_pred c-----------ccHHHHHhc------------------Ccccc-------cCCcHHHHhhhHHHHHcC-----------
Confidence 0 011334443 00000 002355555543221111
Q ss_pred CcceeeeEEEeecccCcceEEEEeeEEeCCCCeeccCcccccCcccccCcccccC-------------------------
Q 017509 250 AGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVT------------------------- 304 (370)
Q Consensus 250 ~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~K~~~~v~~p~~l~l~~~~~~~------------------------- 304 (370)
..|.++|+||+||+.|| +...|+.++|.||.+||+..++...
T Consensus 161 ---------ikisrLP~yLtVq~vRF----gKkaKIlrkV~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~ 227 (374)
T 2vhf_A 161 ---------LKFAEAPSCLIIQMPRF----GKDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDIS 227 (374)
T ss_dssp ---------EEESSCCSEEEEECCCC----SSSSSCCCCCBCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTT
T ss_pred ---------CeeecCCcceEEeeecc----CccccccCCCCCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhcc
Confidence 12999999999999999 4667999999999999986543110
Q ss_pred --C----------------------------------------CCCCccEEEEEEEEeecCCCCCceEEEEEEc--CCCC
Q 017509 305 --P----------------------------------------SAEGRKYELVATVTHHGRDPSKGHYTADARY--FNDQ 340 (370)
Q Consensus 305 --~----------------------------------------~~~~~~Y~L~~vi~H~G~~~~~GHY~a~vr~--~~~~ 340 (370)
+ ......|+|.|||+ +.+|||+||||. .+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt-----adsgHYvafVK~~~~d~~ 302 (374)
T 2vhf_A 228 AGKIKQFCKTCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC-----IETSHYVAFVKYGKDDSA 302 (374)
T ss_dssp TTSCCEECHHHHHHHTTSGGGTTCCCEECCC----------------CCEEEEEEEE-----EETTEEEEEEECSSSTTC
T ss_pred ccccccccchhhhhhhhhhhhhcccccccccCccccccccccCCCCceeEEEEEEEE-----ccCCceEEEEEecCCCCC
Confidence 0 01137899999998 788999999998 3789
Q ss_pred eEEEeCC
Q 017509 341 WLHFDDA 347 (370)
Q Consensus 341 W~~~nD~ 347 (370)
|+.||-.
T Consensus 303 W~~FDsm 309 (374)
T 2vhf_A 303 WLFFDSM 309 (374)
T ss_dssp EEEEETT
T ss_pred eEEEech
Confidence 9999863
No 12
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=97.59 E-value=0.00037 Score=56.32 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=28.4
Q ss_pred EEEEEeecCCCCCceEEEEEEcCCCCeEEEeCCcceeec
Q 017509 315 VATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIG 353 (370)
Q Consensus 315 ~~vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~~V~~v~ 353 (370)
.+.+++.|+ .++|||+.+... .+ +.+|-..+.+++
T Consensus 161 ~~~~vF~G~-~~~GHY~~~~~~-~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 161 VMHAVYTGT-TQNGHYMVDDIE-HG--YCVDGMGIKPLK 195 (211)
T ss_dssp SEEEEEESC-TTTCEEEEEETT-TT--EEEETTEEECCC
T ss_pred eeEEEEEcC-CCCceEEEEecc-cc--eEEeCCceeEcc
Confidence 356778999 899999999766 33 888888888876
No 13
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=96.78 E-value=0.084 Score=45.60 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=28.7
Q ss_pred EEEEEeecCCCCCceEEEEEEcCCCCeEEEeCCcceeecc
Q 017509 315 VATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGT 354 (370)
Q Consensus 315 ~~vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~~V~~v~~ 354 (370)
++..++.|+ .++|||+.+... ++ -+++|-..+.+++.
T Consensus 260 ~~a~vF~G~-~~~GHYt~~~~~-~~-~~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 260 LCANEYTGN-YQCGHYTHITAK-ET-LYRIDGAHLTKMSE 296 (315)
T ss_dssp SEEEEEESC-GGGCEEEEEEES-SS-EEEEETTEEEEESE
T ss_pred EEEEEEECC-CCccceEEEecC-Cc-eeEEeCCcceeccc
Confidence 455667899 789999988875 33 37999999988864
No 14
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=91.39 E-value=0.089 Score=38.98 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=26.6
Q ss_pred EEEEEeecCCCCCceEEEEEEcCCCCeEEEeCCcceeecc
Q 017509 315 VATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGT 354 (370)
Q Consensus 315 ~~vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~~V~~v~~ 354 (370)
+|-|.-.|. +|-+-+.-..+| ||.+||+...+..+
T Consensus 110 hAgIflkg~----eHAVFa~~TS~G-WyaiDDe~fypwtP 144 (167)
T 1qmy_A 110 HAGIFLKGQ----EHAVFACVTSNG-WYAIDDEDFYPWTP 144 (167)
T ss_dssp EEEEEEETT----TEEEEEECCTTS-SEEEETTEEEECCC
T ss_pred hhheeecCC----CceEEEEEccCc-eEEecccccccCCC
Confidence 455555555 799988888566 99999999988754
No 15
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=64.85 E-value=2.6 Score=21.23 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=11.9
Q ss_pred EEEEEcCCCCeEEEeC
Q 017509 331 TADARYFNDQWLHFDD 346 (370)
Q Consensus 331 ~a~vr~~~~~W~~~nD 346 (370)
.+|||. +|.|+..++
T Consensus 11 ~~Yvr~-dg~WV~l~t 25 (27)
T 2ww6_A 11 QAYVRK-FGEWVLLST 25 (27)
T ss_dssp CEEEEE-TTEEEEGGG
T ss_pred ceeEEE-cCeEEEccc
Confidence 468999 888998765
No 16
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=64.75 E-value=5.4 Score=31.65 Aligned_cols=34 Identities=6% Similarity=0.209 Sum_probs=26.9
Q ss_pred EEEEEEeecCCCCCceEEEEEEcCCCCeEEEeCCcceeec
Q 017509 314 LVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIG 353 (370)
Q Consensus 314 L~~vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~~V~~v~ 353 (370)
..|+|++... |++|..|- +|.||-+|-..-.+..
T Consensus 110 ~~~FI~N~~~-----HWfaiRki-gg~WyNLdS~l~~P~~ 143 (191)
T 3o65_A 110 ERSFICNYKQ-----HWFTIRKF-GKHWFNLNSLLAGPEL 143 (191)
T ss_dssp CCEEEEEESS-----CEEEEEEE-TTEEEECCTTSSSCEE
T ss_pred hhhhhhcccc-----ceeeEEec-CCEEEEccCCCCCCCC
Confidence 4588999865 99999998 7899999987654443
No 17
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=64.41 E-value=13 Score=27.56 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=18.8
Q ss_pred CCcccCCchhhHHHHHHHHhC
Q 017509 17 RGLINSGNLCFLNATLQALMS 37 (370)
Q Consensus 17 ~GL~N~gntCy~Ns~lQ~L~~ 37 (370)
.|+.|.-++||+|++||+..-
T Consensus 14 ys~pN~hdncWLNtilQLfry 34 (167)
T 1qmy_A 14 YSRPNNHDNAWLNAILQLFRY 34 (167)
T ss_dssp CCCCCSSSCHHHHHHHHHHHH
T ss_pred ccCCCCCcchHHHHHHHHHHH
Confidence 589999999999999998763
No 18
>1pfs_A PF3 SSDBP, PF3 single-stranded DNA binding protein; viral, bacteriophage PF3; NMR {Pseudomonas phage PF3} SCOP: b.40.4.7
Probab=27.72 E-value=1.2e+02 Score=19.43 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=17.7
Q ss_pred CCCceEEEEEEcC--CC-CeEEEeCCcc
Q 017509 325 PSKGHYTADARYF--ND-QWLHFDDASV 349 (370)
Q Consensus 325 ~~~GHY~a~vr~~--~~-~W~~~nD~~V 349 (370)
.-.|||-+-++-. +| -|+.||-...
T Consensus 48 ~paG~Ye~d~~~~V~dgRlef~~Dprq~ 75 (78)
T 1pfs_A 48 IPAGSYQVPYRINVNNGRPELAFDFKAM 75 (78)
T ss_dssp CCSEEEEEEEEEEEETTEEEEEECTTSC
T ss_pred CCCCceecceEeeecCCcEEEEeChHHh
Confidence 6789998877653 44 5999886544
No 19
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=25.74 E-value=1.8e+02 Score=20.49 Aligned_cols=55 Identities=11% Similarity=0.190 Sum_probs=39.2
Q ss_pred CccEEEEEEEEeecCC--C-------CCceEEEEEEcCCCCeEEEeCCcceeeccccccCCCcEEEEEEe
Q 017509 309 GRKYELVATVTHHGRD--P-------SKGHYTADARYFNDQWLHFDDASVTAIGTSKVLHDQAYVLFYKQ 369 (370)
Q Consensus 309 ~~~Y~L~~vi~H~G~~--~-------~~GHY~a~vr~~~~~W~~~nD~~V~~v~~~~v~~~~~yil~Y~r 369 (370)
....++...|.|-=.+ . --.||+..+.- .+||..|-.+......+.+||+-|+-+
T Consensus 17 g~~~~vk~~I~HPMetGl~~d~~g~~IPa~~I~~v~~------~~ng~~v~~~~~~~~iS~NP~~~F~~~ 80 (108)
T 2oxg_Z 17 GETVTVKALISHKMESGQRKDADGKLIPRSIINRFTC------ELNGVNVVDVAIDPAVSTNPYFEFDAK 80 (108)
T ss_dssp TEEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEEE------EETTEEEEEEEECTTBCSSCEEEEEEE
T ss_pred CCCEEEEEEeECCCccccccCcCCCccchHheEEEEE------EECCEEEEEEEeCCccccCCeEEEEEe
Confidence 3445667778774322 1 12688887774 479999999998888899999998743
No 20
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth factor-transferase), FLT-1 receptor, cystine glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB: 1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Probab=24.95 E-value=66 Score=22.07 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=25.5
Q ss_pred ccEEE-EEEEEeecCCCCCceEEEEEEcCCCCeEEEe
Q 017509 310 RKYEL-VATVTHHGRDPSKGHYTADARYFNDQWLHFD 345 (370)
Q Consensus 310 ~~Y~L-~~vi~H~G~~~~~GHY~a~vr~~~~~W~~~n 345 (370)
..|.. .|+++|.-.-...|.|+|-.+- +|+++.-+
T Consensus 53 ~~~D~k~Gf~I~~~~~~~~g~y~C~a~~-~g~~~~S~ 88 (95)
T 1flt_X 53 IIWDSRKGFIISNATYKEIGLLTCEATV-NGHLYKTN 88 (95)
T ss_dssp EEEETTTEEEESSCCGGGCEEEEEEEEE-TTEEEEEE
T ss_pred eeECCCCCEEEeCCCcccCcEEEEEEEE-CCEEEEEE
Confidence 34433 3788887776789999999998 67666654
No 21
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=24.49 E-value=48 Score=24.97 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=27.6
Q ss_pred EEEeecCCCCCceEEEEEEcCCCCeEEEeCCc---ceeeccccccCC-CcEEEEE
Q 017509 317 TVTHHGRDPSKGHYTADARYFNDQWLHFDDAS---VTAIGTSKVLHD-QAYVLFY 367 (370)
Q Consensus 317 vi~H~G~~~~~GHY~a~vr~~~~~W~~~nD~~---V~~v~~~~v~~~-~~yil~Y 367 (370)
+|+|.....+.|||+-..+..++.++..|-.. ...++.++.... +.++|+-
T Consensus 84 ~I~~~~~~g~~~hfvVl~~~~~~~v~I~DP~~g~~~~~ls~~ef~~~w~G~~l~~ 138 (156)
T 3k8u_A 84 FIVHVIKGKRLQHYYVVYGSQNNQLIIGDPDPSVKVTRMSKERFQSEWTGLAIFL 138 (156)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTEEEEEECSTTTEEEEEEHHHHHHHEEEEEEEE
T ss_pred EEEEEEecCCCcEEEEEEEEcCCEEEEEcCCCCcceEEEcHHHHHhhCceEEEEE
Confidence 34554321224799987776555566666433 455666655432 4555554
No 22
>1r75_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 1.86A {Leishmania major} SCOP: b.134.1.1
Probab=24.18 E-value=87 Score=23.34 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=19.2
Q ss_pred CceEEEEEEcCCCCeEEEeCCcceeecc
Q 017509 327 KGHYTADARYFNDQWLHFDDASVTAIGT 354 (370)
Q Consensus 327 ~GHY~a~vr~~~~~W~~~nD~~V~~v~~ 354 (370)
.|=-+-.|...+++|+.|||+...+...
T Consensus 39 nGLLfRIVd~~~~~WaFYNDT~~yeMhV 66 (141)
T 1r75_A 39 SNILYRIADTEARRWAFYNDSKELIIHV 66 (141)
T ss_dssp TTSEEEEEETTTTEEEEEECCSSEEEEE
T ss_pred CcEEEEEEecCCCEEEEEeCCceEEEEE
Confidence 3445566655578999999997665543
No 23
>2x9a_A Attachment protein G3P; transmembrane, phage infection, phage recognition, HOST-VIRU interaction, virion; 2.47A {Enterobacteria phage IF1} PDB: 2x9b_A
Probab=24.08 E-value=69 Score=19.97 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=20.0
Q ss_pred CccEEEEEEEEeecCC-CCCceEEEEE
Q 017509 309 GRKYELVATVTHHGRD-PSKGHYTADA 334 (370)
Q Consensus 309 ~~~Y~L~~vi~H~G~~-~~~GHY~a~v 334 (370)
.+.|++.|||+-.|.. ...||++-.-
T Consensus 33 gC~Y~atGViVg~~dgtv~a~~W~P~g 59 (65)
T 2x9a_A 33 NCIYELSGIGIGYDNDTSWNGHWTPVR 59 (65)
T ss_dssp TEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred CeEEEeeeEEEECCCCCEEecceeEee
Confidence 7899999999999983 3367776443
No 24
>3ie4_A GRAM-negative binding protein 3; immunoglobulin fold, immune system; 1.45A {Drosophila melanogaster}
Probab=23.91 E-value=1.2e+02 Score=21.38 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=25.2
Q ss_pred EEEEEEEEeec---CCCCCceEEEEEEcC-CCCeEEEeCCcc
Q 017509 312 YELVATVTHHG---RDPSKGHYTADARYF-NDQWLHFDDASV 349 (370)
Q Consensus 312 Y~L~~vi~H~G---~~~~~GHY~a~vr~~-~~~W~~~nD~~V 349 (370)
++|.|+=.-.. .....|+|...+-.. +|+|+.-|+...
T Consensus 26 i~lf~fh~~iN~~~~~~~~g~~~~dit~~~~GrW~~~d~~~~ 67 (107)
T 3ie4_A 26 ITLFAFHGKLNEEMEGLEAGTWARDIVKAKNGRWTFRDRITA 67 (107)
T ss_dssp EEEEEEEEEESSCCCSSCCCSEEEEECCCBTTEEEEEESSCC
T ss_pred CEEEEEEEEeCCCCcCccccEeEEeEeEecCCEEEEECCCce
Confidence 44444433333 335679999888875 889999888643
Done!