Your job contains 1 sequence.
>017510
MEKEVMELCEAAKRRAETAASAEGELEEAQCIAALDQLHKSSITCQLLVSTQLVRHLLPL
TKHPRQKIQDTASELILSWRSLFLEQMKGDEENGSFAICGEIKSANVEIAKGKRQITSDE
FEQALDVEVVKVRRVDQKGAPRSKKLVGSEFIVTEETNSLDNVDAEAIREEKPASAVVPQ
KLVSMIKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWG
HSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIK
KERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYWES
TTALYGLLPV
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017510
(370 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2064195 - symbol:TFIIS "transcript elongation ... 506 1.8e-48 1
TAIR|locus:2124097 - symbol:AT4G18720 species:3702 "Arabi... 261 4.0e-26 2
TAIR|locus:2052351 - symbol:AT2G42730 species:3702 "Arabi... 258 2.3e-20 1
UNIPROTKB|Q2KI09 - symbol:TCEA3 "Transcription elongation... 201 7.0e-14 1
UNIPROTKB|F1N0P7 - symbol:TCEA3 "Transcription elongation... 196 2.8e-13 1
UNIPROTKB|O75764 - symbol:TCEA3 "Transcription elongation... 196 2.8e-13 1
TAIR|locus:504954948 - symbol:AT5G42325 species:3702 "Ara... 173 1.2e-12 1
UNIPROTKB|F1NP37 - symbol:TCEA1 "Uncharacterized protein"... 167 5.3e-12 2
ZFIN|ZDB-GENE-040426-985 - symbol:tcea2 "transcription el... 182 6.7e-12 1
ZFIN|ZDB-GENE-030131-8049 - symbol:tcea1 "transcription e... 181 1.0e-11 1
UNIPROTKB|Q5JRI7 - symbol:TCEA2 "Transcription elongation... 173 1.4e-11 1
UNIPROTKB|Q15560 - symbol:TCEA2 "Transcription elongation... 178 2.0e-11 1
RGD|1311369 - symbol:Tcea3 "transcription elongation fact... 179 2.8e-11 1
UNIPROTKB|F1NP36 - symbol:TCEA1 "Uncharacterized protein"... 164 3.0e-11 2
UNIPROTKB|F1MIT2 - symbol:TCEA1 "Transcription elongation... 157 5.4e-11 2
UNIPROTKB|E2RIY6 - symbol:TCEA3 "Uncharacterized protein"... 175 8.2e-11 1
UNIPROTKB|Q29RL9 - symbol:TCEA1 "Transcription elongation... 157 9.3e-11 2
MGI|MGI:1196908 - symbol:Tcea3 "transcription elongation ... 174 1.1e-10 1
UNIPROTKB|P23193 - symbol:TCEA1 "Transcription elongation... 156 1.5e-10 2
FB|FBgn0030663 - symbol:CG8117 species:7227 "Drosophila m... 153 2.0e-10 1
UNIPROTKB|Q148K0 - symbol:TCEA2 "Transcription elongation... 169 2.4e-10 1
UNIPROTKB|F1PPX8 - symbol:TCEA2 "Uncharacterized protein"... 166 3.5e-10 1
UNIPROTKB|F1NBF9 - symbol:TCEA2 "Uncharacterized protein"... 166 6.3e-10 1
MGI|MGI:1196624 - symbol:Tcea1 "transcription elongation ... 162 1.7e-09 1
UNIPROTKB|E2QVN6 - symbol:TCEA1 "Uncharacterized protein"... 161 2.2e-09 1
UNIPROTKB|D4A6D1 - symbol:Tcea2 "Transcription elongation... 156 5.7e-09 1
RGD|1309880 - symbol:Tcea1 "transcription elongation fact... 157 6.4e-09 1
ASPGD|ASPL0000075205 - symbol:AN4861 species:162425 "Emer... 152 6.9e-09 2
FB|FBgn0010422 - symbol:TfIIS "RNA polymerase II elongati... 157 7.3e-09 1
UNIPROTKB|G1K224 - symbol:TCEA2 "Transcription elongation... 155 1.1e-08 1
RGD|61825 - symbol:Tcea2 "transcription elongation factor... 154 1.4e-08 1
UNIPROTKB|Q63799 - symbol:Tcea2 "Transcription elongation... 154 1.4e-08 1
MGI|MGI:107368 - symbol:Tcea2 "transcription elongation f... 153 1.8e-08 1
UNIPROTKB|F1RSG8 - symbol:TCEA1 "Uncharacterized protein"... 151 3.2e-08 1
WB|WBGene00012000 - symbol:T24H10.1 species:6239 "Caenorh... 151 3.4e-08 1
ZFIN|ZDB-GENE-040426-1860 - symbol:tcea3 "transcription e... 152 5.2e-08 1
UNIPROTKB|I3L6H4 - symbol:I3L6H4 "Uncharacterized protein... 127 1.4e-07 1
UNIPROTKB|I3LFG3 - symbol:SPOCD1 "Uncharacterized protein... 137 4.1e-07 1
CGD|CAL0002729 - symbol:orf19.4537 species:5476 "Candida ... 141 4.7e-07 1
UNIPROTKB|E1BVY1 - symbol:PHF3 "Uncharacterized protein" ... 152 4.7e-07 1
GENEDB_PFALCIPARUM|PF07_0057 - symbol:PF07_0057 "transcri... 130 5.4e-07 2
UNIPROTKB|Q8IBV2 - symbol:PF07_0057 "Transcription elonga... 130 5.4e-07 2
UNIPROTKB|F1SV96 - symbol:SPOCD1 "Uncharacterized protein... 142 3.2e-06 1
ASPGD|ASPL0000042794 - symbol:AN1777 species:162425 "Emer... 140 3.7e-06 1
RGD|1304925 - symbol:Phf3 "PHD finger protein 3" species:... 142 5.9e-06 1
UNIPROTKB|G5E5M1 - symbol:PHF3 "Uncharacterized protein" ... 141 7.6e-06 1
UNIPROTKB|E7EVH3 - symbol:PHF3 "PHD finger protein 3" spe... 136 8.8e-06 2
UNIPROTKB|E7ER40 - symbol:PHF3 "PHD finger protein 3" spe... 136 9.9e-06 1
SGD|S000003011 - symbol:DST1 "General transcription elong... 129 1.1e-05 1
UNIPROTKB|E2R336 - symbol:SPOCD1 "Uncharacterized protein... 134 1.3e-05 1
POMBASE|SPCC645.13 - symbol:SPCC645.13 "transcription elo... 133 1.7e-05 1
UNIPROTKB|F1MG39 - symbol:F1MG39 "Uncharacterized protein... 134 2.4e-05 1
TAIR|locus:2179419 - symbol:AT5G25520 species:3702 "Arabi... 132 3.3e-05 1
UNIPROTKB|Q92576 - symbol:PHF3 "PHD finger protein 3" spe... 136 3.7e-05 2
ZFIN|ZDB-GENE-030131-6117 - symbol:dido1 "death inducer-o... 136 3.8e-05 1
MGI|MGI:1344352 - symbol:Dido1 "death inducer-obliterator... 135 3.9e-05 1
UNIPROTKB|H0YF46 - symbol:SPOCD1 "SPOC domain-containing ... 122 4.4e-05 1
TAIR|locus:2050311 - symbol:AT2G25640 species:3702 "Arabi... 128 4.5e-05 2
UNIPROTKB|F1PLS2 - symbol:DIDO1 "Uncharacterized protein"... 128 0.00015 1
UNIPROTKB|E2R727 - symbol:PHF3 "Uncharacterized protein" ... 137 0.00017 3
ZFIN|ZDB-GENE-090313-207 - symbol:phf3 "PHD finger protei... 128 0.00017 1
UNIPROTKB|E9PPM7 - symbol:SPOCD1 "SPOC domain-containing ... 122 0.00023 1
UNIPROTKB|E1BRR3 - symbol:TCEANC "Uncharacterized protein... 118 0.00027 1
UNIPROTKB|Q6ZMY3 - symbol:SPOCD1 "SPOC domain-containing ... 124 0.00031 1
UNIPROTKB|F1NFF0 - symbol:Gga.41084 "Uncharacterized prot... 135 0.00038 2
UNIPROTKB|F1NGH5 - symbol:Gga.41084 "Uncharacterized prot... 135 0.00039 2
UNIPROTKB|Q9BTC0 - symbol:DIDO1 "Death-inducer obliterato... 125 0.00048 1
>TAIR|locus:2064195 [details] [associations]
symbol:TFIIS "transcript elongation factor IIS"
species:3702 "Arabidopsis thaliana" [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003746 "translation elongation factor
activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0010162 "seed
dormancy process" evidence=RCA;IMP] [GO:0034243 "regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA] [GO:0000394 "RNA
splicing, via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007062 "sister chromatid cohesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=IMP;RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010182 "sugar mediated
signaling pathway" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010431 "seed maturation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
[GO:0048825 "cotyledon development" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] [GO:0009739 "response to gibberellin stimulus"
evidence=IMP] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0009739 GO:GO:0009845
GO:GO:0003746 GO:GO:0009910 EMBL:AC005499 GO:GO:0010162
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0034243 Gene3D:1.20.930.10
SUPFAM:SSF47676 KO:K03145 TIGRFAMs:TIGR01385 HSSP:P23193
OMA:LEIWKKV UniGene:At.13130 EMBL:AY150517 EMBL:AK117557
IPI:IPI00532116 PIR:E84806 RefSeq:NP_181390.1
ProteinModelPortal:Q9ZVH8 SMR:Q9ZVH8 IntAct:Q9ZVH8 STRING:Q9ZVH8
PRIDE:Q9ZVH8 EnsemblPlants:AT2G38560.1 GeneID:818438
KEGG:ath:AT2G38560 TAIR:At2g38560 InParanoid:Q9ZVH8
PhylomeDB:Q9ZVH8 ProtClustDB:CLSN2683212 Genevestigator:Q9ZVH8
Uniprot:Q9ZVH8
Length = 378
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 127/357 (35%), Positives = 198/357 (55%)
Query: 27 EEAQCIAALDQLHKSSITCQLLVSTQLVRHLLPLTKHPRQKIQDTASELILSWRSLFLEQ 86
E +QCI AL QL K +T LV+TQ+ + L L KHP + I+ A++L+ W+ + +E+
Sbjct: 30 EVSQCIDALKQLKKFPVTYDTLVATQVGKKLRSLAKHPVEDIKSVATDLLEIWKKVVIEE 89
Query: 87 M-KGDEENGSFAICGEIKSANVEIAKGKRQ--ITSDEFEQALDVEVVKVRRV--DQK--- 138
K + G+ C E K +++ K + + ++ + +KV R D K
Sbjct: 90 TAKAKKTEGTNG-CKEAKVNKMDVEKPSNPAPVKVQKLQRGDSAKSIKVERKEPDNKVVT 148
Query: 139 GAPRSKKLVGSEFIVTEETNSLDNVDAEAIREEK-----------PASAV-VPQKLVSMI 186
G +K+ + VT T +D +A+++EK PA A P KL +M+
Sbjct: 149 GVKIERKV--PDIKVTNGTK-ID-YRGQAVKDEKVSKDNQSSMKAPAKAANAPPKLTAML 204
Query: 187 KCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTY 246
KCND R++IRE L +AL +V+GE D+ ++ +N DP+RVA++ ESLMFEK G S G
Sbjct: 205 KCNDPVRDKIRELLVEALCRVAGEADDYERESVNASDPLRVAVSVESLMFEKLGRSTGAQ 264
Query: 247 EVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASD 306
++KYRSI+FNL D NPD RR+VL G + PE LI +S+E+M SD ++ N QIK++ D
Sbjct: 265 KLKYRSIMFNLRDSNNPDLRRRVLTGEISPEKLITLSAEDMASDKRKQENNQIKEKALFD 324
Query: 307 RYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAKR----IKCLNCYQYWE 359
+G L + ++ CGRCG +K T + S+ + + C+NC +W+
Sbjct: 325 CE---RG--LAAKASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNCDNHWK 376
>TAIR|locus:2124097 [details] [associations]
symbol:AT4G18720 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF07500 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00509 SMART:SM00510 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 EMBL:AL161549 GO:GO:0008270
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 EMBL:AL035526
UniGene:At.22875 HOGENOM:HOG000195015 KO:K03145 IPI:IPI00529744
PIR:T04864 RefSeq:NP_193607.1 ProteinModelPortal:Q9SN41 SMR:Q9SN41
EnsemblPlants:AT4G18720.1 GeneID:827606 KEGG:ath:AT4G18720
TAIR:At4g18720 eggNOG:KOG1105 InParanoid:Q9SN41 PhylomeDB:Q9SN41
ProtClustDB:CLSN2685449 ArrayExpress:Q9SN41 Genevestigator:Q9SN41
Uniprot:Q9SN41
Length = 266
Score = 261 (96.9 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 65/163 (39%), Positives = 91/163 (55%)
Query: 166 EAIREEKPASAVVPQKLVSMIKCNDYFRERIREKLYKALSKVSGEV-DEEVQDKLNGCDP 224
E R+ + A+ +P +M K D R+++RE L +L+KV+ EV D E++ ++ CDP
Sbjct: 92 EKSRDNREAAVKIPTH-ATMKKTGDSKRDKVREILQTSLAKVASEVVDTEMKTRVTACDP 150
Query: 225 IRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSS 284
VA++ E+ MFE G G + KYRSILFN+ D NPD RRKVLLG + E L+KM
Sbjct: 151 WVVAVSVETAMFENLGCFMGPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKMEK 210
Query: 285 EEMVSD---GSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTR 324
EEM S SRR N + +D P +L +H R
Sbjct: 211 EEMGSSWYTNSRR-NPLYESTHYTDFRFPQIKAHL---WHKVR 249
Score = 49 (22.3 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 17/84 (20%), Positives = 33/84 (39%)
Query: 2 EKEVMELCXXXXXXXXXXXXXXGELEEAQCIAALDQLHKS--SITCQLLVSTQLVRHLLP 59
++E MEL E ++ + A+++L ++ S+ C ++ T + + L
Sbjct: 3 KREFMELFEAALRAAKSVKGDENSPEVSRFVDAMNRLKEAPKSLVCDVVCKTSMGQGLEF 62
Query: 60 LTKHPRQKIQDTASELILSWRSLF 83
H KI+ L W F
Sbjct: 63 FIDHKNPKIRSEGRILRDLWMKFF 86
>TAIR|locus:2052351 [details] [associations]
symbol:AT2G42730 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001810 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF00646 Pfam:PF07500
PROSITE:PS50181 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 SUPFAM:SSF81383 InterPro:IPR006566
SMART:SM00579 Gene3D:1.10.472.30 SUPFAM:SSF46942 InterPro:IPR027191
PANTHER:PTHR32555 InterPro:IPR013101 Pfam:PF07723 IPI:IPI00519130
RefSeq:NP_181801.1 UniGene:At.36975 ProteinModelPortal:F4IP72
SMR:F4IP72 PRIDE:F4IP72 EnsemblPlants:AT2G42730.1 GeneID:818873
KEGG:ath:AT2G42730 Uniprot:F4IP72
Length = 737
Score = 258 (95.9 bits), Expect = 2.3e-20, P = 2.3e-20
Identities = 53/126 (42%), Positives = 82/126 (65%)
Query: 184 SMIKCNDYFRERIREKLYKALSKVSGE-VDEEVQDKLNGCDPIRVAITAESLMFEKWGHS 242
+M K D R+++RE L +L KV+ E VD E++ ++ CDP VA++ ES MFEK G
Sbjct: 598 TMKKTGDSKRDKVREILQTSLVKVASEIVDTEMKTRVTACDPSVVAVSVESAMFEKLGCF 657
Query: 243 FGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKE 302
G ++ KYRSILFN+ D NPD RRKVL+G + E L+ M +EM GS ++ +++++
Sbjct: 658 MGPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTMERQEM---GSEKIQKEVQRI 714
Query: 303 RASDRY 308
+ + R+
Sbjct: 715 KENARF 720
>UNIPROTKB|Q2KI09 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
EMBL:BC112812 IPI:IPI00713590 RefSeq:NP_001039825.1
UniGene:Bt.28947 ProteinModelPortal:Q2KI09 SMR:Q2KI09 PRIDE:Q2KI09
GeneID:533803 KEGG:bta:533803 CTD:6920 InParanoid:Q2KI09
OrthoDB:EOG4NP741 NextBio:20876155 Uniprot:Q2KI09
Length = 349
Score = 201 (75.8 bits), Expect = 7.0e-14, P = 7.0e-14
Identities = 84/334 (25%), Positives = 142/334 (42%)
Query: 34 ALDQLHKSS---ITCQLLVSTQLVRHLLPLTKHPRQK-IQDTASELILSWRSLFLEQMKG 89
ALD L K ++ QLL +T++ + + KH K + A LI +W+ L
Sbjct: 26 ALDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNKEVVALAKVLIRNWKQLLDSPATP 85
Query: 90 DEENGSFAICGEIKSANVEIAKGKRQITSDEFEQALDVEVVKVRR--VDQKGAPRSKKLV 147
E G + + K ++ + K + TS + VE K RR VD K + S
Sbjct: 86 KGEKGEERVKAKKKEKGLDCSDWKPE-TSLSPPRKKRVEEPKDRRDSVDSKSSATSSPKR 144
Query: 148 GSEFIVTEETNSLDNVDAEAIRE-EKPASAVVPQKLVSMIKCNDYFR-ERIREKLYKALS 205
S E +NS + AE R P+S + + C Y + +R+K + LS
Sbjct: 145 PS----MERSNSSKS-KAETPRTPSSPSSPTFAPSVCLLAPC--YLTGDSVRDKCVEMLS 197
Query: 206 KVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDF 265
+ D++ +D CD ++A E ++++ + Y + RS + NL DP NP
Sbjct: 198 AAL-KADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGL 254
Query: 266 RRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRY 325
RR VL G + + KM++EEM SD R L + +E + + GG ++ ++
Sbjct: 255 RRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKC 314
Query: 326 MCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYWE 359
C + + D+ + + C C W+
Sbjct: 315 KKKNCTYNQVQTRSADEPMTTF-VLCNECGNRWK 347
>UNIPROTKB|F1N0P7 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 IPI:IPI00713590 OMA:KGLDCSD
EMBL:DAAA02006436 EMBL:DAAA02006437 Ensembl:ENSBTAT00000004501
Uniprot:F1N0P7
Length = 348
Score = 196 (74.1 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 83/334 (24%), Positives = 143/334 (42%)
Query: 34 ALDQLHKSS---ITCQLLVSTQLVRHLLPLTKHPRQK-IQDTASELILSWRSLFLEQMKG 89
ALD L K ++ QLL +T++ + + KH K + A LI +W+ L
Sbjct: 26 ALDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNKEVVALAKVLIRNWKQLLDSPATP 85
Query: 90 DEENGSFAICGEIKSANVEIAKGKRQITSDEFEQALDVEVVKVRR--VDQKGAPRSKKLV 147
E G + + K ++ + K + TS + VE K RR VD K + S
Sbjct: 86 KGEKGEERVKAKKKEKGLDCSDWKPE-TSLSPPRKKRVEEPKDRRDSVDSKSSATSSPKR 144
Query: 148 GSEFIVTEETNSLDNVDAEAIRE-EKPASAVVPQKLVSMIKCNDYFR-ERIREKLYKALS 205
S E +NS + AE R P+S + + C Y + +R+K + LS
Sbjct: 145 PS----MERSNSSKS-KAETPRTPSSPSSPTFAPSVCLLAPC--YLTGDSVRDKCVEMLS 197
Query: 206 KVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDF 265
+ D++ +D CD ++A E ++++ + Y + RS + NL DP NP
Sbjct: 198 AAL-KADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGL 254
Query: 266 RRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRY 325
RR VL G + + KM++EEM SD R L + +E + + GG ++ ++
Sbjct: 255 RRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKC 314
Query: 326 MCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYWE 359
C + + ++ ++ + C C W+
Sbjct: 315 KKKNCTYNQVQTRTDEPMTTF--VLCNECGNRWK 346
>UNIPROTKB|O75764 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9606 "Homo sapiens" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 EMBL:AL357134
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL109936 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385 CTD:6920
OrthoDB:EOG4NP741 EMBL:AK290272 EMBL:BC041613 EMBL:AJ223473
IPI:IPI00178146 RefSeq:NP_003187.1 UniGene:Hs.446354
ProteinModelPortal:O75764 SMR:O75764 IntAct:O75764 STRING:O75764
PhosphoSite:O75764 PaxDb:O75764 PRIDE:O75764 DNASU:6920
Ensembl:ENST00000450454 GeneID:6920 KEGG:hsa:6920 UCSC:uc021oig.1
GeneCards:GC01M023706 HGNC:HGNC:11615 HPA:HPA044960 MIM:604128
neXtProt:NX_O75764 PharmGKB:PA36374 InParanoid:O75764 OMA:KGLDCSD
ChiTaRS:TCEA3 GenomeRNAi:6920 NextBio:27073 ArrayExpress:O75764
Bgee:O75764 CleanEx:HS_TCEA3 Genevestigator:O75764
GermOnline:ENSG00000204219 Uniprot:O75764
Length = 348
Score = 196 (74.1 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 81/330 (24%), Positives = 140/330 (42%)
Query: 35 LDQLHKSSITCQLLVSTQLVRHLLPLTKHPRQK-IQDTASELILSWRSLFLEQMKGDEEN 93
L +LH ++ QLL +T++ + + KH K + A LI +W+ L E
Sbjct: 30 LKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLDSPGPPKGEK 89
Query: 94 GSFAICGEIKSANVEIAKGKRQITSDEFEQALDVEVVKVRR--VDQKGAPRSKKLVGSEF 151
G + K +E + K + + E K RR VD K + S S
Sbjct: 90 GEEREKAKKKEKGLECSDWKPEAGLSPPRKKR--EDPKTRRDSVDSKSSASSSPKRPS-- 145
Query: 152 IVTEETNSLDNVDAEAIREEKPASAVVPQKLVSM-IKCNDYFR-ERIREKLYKALSKVSG 209
E +NS + AE+ + P+S + P SM + Y + +R+K + LS
Sbjct: 146 --VERSNSSKS-KAES--PKTPSSPLTPTFASSMCLLAPCYLTGDSVRDKCVEMLSAAL- 199
Query: 210 EVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKV 269
+ D++ +D CD ++A E ++++ + Y + RS + NL DP NP RR V
Sbjct: 200 KADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNV 257
Query: 270 LLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGR 329
L G + + KM++EEM SD R L + +E + + GG ++ ++
Sbjct: 258 LSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKN 317
Query: 330 CGHKKTTNHGNDQNSSAKRIKCLNCYQYWE 359
C + + D+ + + C C W+
Sbjct: 318 CTYNQVQTRSADEPMTTF-VLCNECGNRWK 346
>TAIR|locus:504954948 [details] [associations]
symbol:AT5G42325 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017923 Pfam:PF07500
PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634 EMBL:CP002688
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
KO:K03145 IPI:IPI00542827 RefSeq:NP_680377.1 UniGene:At.65714
ProteinModelPortal:F4K1I5 SMR:F4K1I5 PRIDE:F4K1I5
EnsemblPlants:AT5G42325.1 GeneID:834238 KEGG:ath:AT5G42325
OMA:SADMIMT PhylomeDB:F4K1I5 Uniprot:F4K1I5
Length = 233
Score = 173 (66.0 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 53/139 (38%), Positives = 76/139 (54%)
Query: 171 EKPASAVVPQKLVS---MIKCNDYFRERIREKLYKALSKVSGEV-DEEVQDK-LNGCDPI 225
EK P K+ + M K D R+++ E L +L+KV+ EV D E++ + + CDP
Sbjct: 92 EKSRDRETPVKIPTHSTMKKTGDSKRDKVHEILQSSLAKVATEVVDTEMKRRVMTVCDPW 151
Query: 226 RVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSE 285
VA++ ES M SILFN+ D NPD RRKVL+G + E L+KM +
Sbjct: 152 VVAVSVESAM----------------SILFNMGDSNNPDLRRKVLIGEISGERLVKMEKD 195
Query: 286 EMVSDGSRRLNQQIKKERA 304
EM S+ ++ Q+IK ERA
Sbjct: 196 EMGSEKIQKEVQRIK-ERA 213
>UNIPROTKB|F1NP37 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AADN02021697 EMBL:AADN02021698
IPI:IPI00575645 Ensembl:ENSGALT00000024654 ArrayExpress:F1NP37
Uniprot:F1NP37
Length = 280
Score = 167 (63.8 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 58/229 (25%), Positives = 102/229 (44%)
Query: 136 DQKGAPRSKKLVGSEFIVTEETNSLDNVDAEAIREEKPASAVVPQKLVSMIKCNDYFRER 195
++K P S E EE++S N + P+++ +P +D R +
Sbjct: 67 EKKKEPASSSQNSPE--AREESSSSSNSSSRKEEGSAPSNSFIPS-FPRAPSTSDSVRVK 123
Query: 196 IREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILF 255
RE L AL +G D+ + G D + T + +F++ ++ Y+ + RS +
Sbjct: 124 CREMLSAALR--TG--DDYIAI---GADEEELE-TIHTPIFQELKNTDMKYKNRVRSRIA 175
Query: 256 NLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGY 315
NL D +NP+ R+ VL G++ P+ KM++EEM SD + + + + KE + + GG
Sbjct: 176 NLKDAKNPNLRKNVLCGNIPPDKFAKMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGT 235
Query: 316 LGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAKR-----IKCLNCYQYWE 359
+ + CG+C KK + Q SA + C C W+
Sbjct: 236 -----QTDLFTCGKC-KKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 278
Score = 51 (23.0 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 29 AQCIAALDQLHKSSITCQLLVSTQLVRHLLPLTKHPR-QKIQDTASELILSWRSLFLEQM 87
A + L +L +T +LL +T++ + + K +++ A LI SW+ L L+
Sbjct: 1 AGALDLLKELKNIPMTLELLQTTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKL-LDGP 59
Query: 88 KGDEEN 93
D+++
Sbjct: 60 STDKDS 65
>ZFIN|ZDB-GENE-040426-985 [details] [associations]
symbol:tcea2 "transcription elongation factor A
(SII), 2" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-985 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:CR457456 EMBL:CT025851
IPI:IPI00495893 Ensembl:ENSDART00000014222 ArrayExpress:F1QTS2
Bgee:F1QTS2 Uniprot:F1QTS2
Length = 301
Score = 182 (69.1 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 67/259 (25%), Positives = 112/259 (43%)
Query: 114 RQITSDEFEQALDVEVVKV--RRVD-QKGAPRSKKLVGSEFIVTEETNSLDNVDAEAIRE 170
R+ +SDE Q L ++K + +D +G P KK G + + + + +
Sbjct: 56 RKQSSDEEVQTLAKSLIKAWKKLLDGSEGKPEEKK--GESPLQSSSSKDCPGSSDTSNKP 113
Query: 171 EKPASAVVP-QKLVSMIK----CNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPI 225
E P + P +M D R + RE L AL + D + Q G D
Sbjct: 114 ETPKTPTTPVTPKFTMFPPAPVTTDSVRTKCRELLVAAL-----QTDGDHQTI--GADCE 166
Query: 226 RVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSE 285
+A E +++++ + Y+ + RS + NL D +NPD RR VL G++ PE + M++E
Sbjct: 167 HMAAQIEDYIYQEFKSTDMKYKTRLRSRISNLKDQKNPDLRRNVLCGNISPERIASMTAE 226
Query: 286 EMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSS 345
EM S + + + + KE + L GG + ++CG+C K T + Q S
Sbjct: 227 EMASPELKEIRKALTKESIREHQLSKVGGT-----ETDMFVCGKCKGKNCT-YTQVQTRS 280
Query: 346 AKR-----IKCLNCYQYWE 359
A + C C W+
Sbjct: 281 ADEPMTTFVLCNECGNRWK 299
>ZFIN|ZDB-GENE-030131-8049 [details] [associations]
symbol:tcea1 "transcription elongation factor A
(SII), 1" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-030131-8049 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022
KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AL929271 EMBL:CT955968
EMBL:BC053177 IPI:IPI00500366 RefSeq:NP_956288.1 UniGene:Dr.11529
SMR:Q7T3C1 STRING:Q7T3C1 Ensembl:ENSDART00000101861 GeneID:336105
KEGG:dre:336105 NextBio:20811191 Uniprot:Q7T3C1
Length = 309
Score = 181 (68.8 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 64/260 (24%), Positives = 117/260 (45%)
Query: 113 KRQITSDEFEQALDVEVVKV--RRVDQKGAPRS----KKLVGSEFIVTEETNSLDNVDAE 166
++Q T DE +L ++K + +D+ A ++ KK + + ET+ ++
Sbjct: 58 RKQSTDDEVT-SLAKSLIKSWKKLLDEPAADKNSEEKKKERTTPVVSPSETSPEPREESS 116
Query: 167 AIREEKPASAV--VPQKLVSMIKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDP 224
+ + +V P L++ + +R K + LS D+ + + CD
Sbjct: 117 SSNSSSKSESVDVTPNTLIATFPRAPGTSDSVRIKCREMLSNALQTGDDYITIG-SDCDE 175
Query: 225 IRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSS 284
+ I E +F ++ ++ Y+ + RS + NL D +NP+ RR VL G+V P+ + KM++
Sbjct: 176 LGAQI--EECIFLEFKNTDMKYKNRVRSRISNLKDAKNPNLRRNVLCGNVSPDRIAKMTA 233
Query: 285 EEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNS 344
EEM SD + + + + KE D + GG + + CG+C KK T + Q
Sbjct: 234 EEMASDELKEMRKNLTKEAIRDHQVATSGGT-----QTDLFTCGKCKKKKCT-YTQVQTR 287
Query: 345 SAKR-----IKCLNCYQYWE 359
SA + C C W+
Sbjct: 288 SADEPMTTFVFCNECGNRWK 307
>UNIPROTKB|Q5JRI7 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL590548 EMBL:AL355803
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
UniGene:Hs.505004 UniGene:Hs.736326 HGNC:HGNC:11614 IPI:IPI00647399
SMR:Q5JRI7 STRING:Q5JRI7 Ensembl:ENST00000339217
Ensembl:ENST00000440819 Uniprot:Q5JRI7
Length = 246
Score = 173 (66.0 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 62/229 (27%), Positives = 104/229 (45%)
Query: 114 RQITSDEFEQALDVEVVKV--RRVDQKGAPRSKKLVGSEFIVTEETNSLDNVDAEAIREE 171
R+ +SDE AL ++K + +D A ++ G + T ++ + D R E
Sbjct: 30 RKQSSDEEVIALAKSLIKSWKKLLDASDAKARERGRGMP-LPTSSRDASEAPDPSRKRPE 88
Query: 172 KPASAVVPQKLVSM----IKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRV 227
P + P ++ + + C D R + RE L AL + D + G D R+
Sbjct: 89 LPRAPSTP-RITTFPPVPVTC-DAVRNKCREMLTAAL-----QTDHD--HVAIGADCERL 139
Query: 228 AITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEM 287
+ E +F G++ Y+ + RS + NL D +NPD RR VL G + P+ + M+SEEM
Sbjct: 140 SAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEM 199
Query: 288 VSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTT 336
SD + + + + KE + + GG + + CG+C K T
Sbjct: 200 ASDELKEIRKAMTKEAIREHQMARTGGT-----QTDLFTCGKCRKKNCT 243
>UNIPROTKB|Q15560 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=NAS] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=NAS] [GO:0008023 "transcription
elongation factor complex" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 Gene3D:1.10.472.30 SUPFAM:SSF46942
GO:GO:0008023 GO:GO:0006354 Gene3D:1.20.930.10 SUPFAM:SSF47676
GO:GO:0032784 EMBL:AL590548 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 TIGRFAMs:TIGR01385 CTD:6919
EMBL:D50495 EMBL:BC018896 EMBL:U86749 IPI:IPI00018403 PIR:JC4577
RefSeq:NP_003186.1 RefSeq:NP_942016.1 UniGene:Hs.505004
UniGene:Hs.736326 PDB:2LW4 PDBsum:2LW4 ProteinModelPortal:Q15560
SMR:Q15560 IntAct:Q15560 STRING:Q15560 PhosphoSite:Q15560
DMDM:28380177 PaxDb:Q15560 PRIDE:Q15560 DNASU:6919
Ensembl:ENST00000343484 Ensembl:ENST00000361317
Ensembl:ENST00000458442 GeneID:6919 KEGG:hsa:6919 UCSC:uc021wgp.1
GeneCards:GC20P062681 H-InvDB:HIX0174737 HGNC:HGNC:11614
HPA:HPA043836 MIM:604784 neXtProt:NX_Q15560 PharmGKB:PA36373
OMA:AVGADCE GenomeRNAi:6919 NextBio:27067 ArrayExpress:Q15560
Bgee:Q15560 CleanEx:HS_TCEA2 Genevestigator:Q15560
GermOnline:ENSG00000171703 Uniprot:Q15560
Length = 299
Score = 178 (67.7 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 67/257 (26%), Positives = 113/257 (43%)
Query: 114 RQITSDEFEQALDVEVVKV--RRVDQKGAPRSKKLVGSEFIVTEETNSLDNVDAEAIREE 171
R+ +SDE AL ++K + +D A ++ G + T ++ + D R E
Sbjct: 57 RKQSSDEEVIALAKSLIKSWKKLLDASDAKARERGRGMP-LPTSSRDASEAPDPSRKRPE 115
Query: 172 KPASAVVPQKLVSM----IKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRV 227
P + P ++ + + C D R + RE L AL + D + G D R+
Sbjct: 116 LPRAPSTP-RITTFPPVPVTC-DAVRNKCREMLTAAL-----QTDHD--HVAIGADCERL 166
Query: 228 AITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEM 287
+ E +F G++ Y+ + RS + NL D +NPD RR VL G + P+ + M+SEEM
Sbjct: 167 SAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEM 226
Query: 288 VSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAK 347
SD + + + + KE + + GG + + CG+C KK + Q S+
Sbjct: 227 ASDELKEIRKAMTKEAIREHQMARTGGT-----QTDLFTCGKC-RKKNCTYTQVQTRSSD 280
Query: 348 R-----IKCLNCYQYWE 359
+ C C W+
Sbjct: 281 EPMTTFVVCNECGNRWK 297
>RGD|1311369 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:1311369 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 EMBL:BC091180 IPI:IPI00365276
RefSeq:NP_001015008.1 UniGene:Rn.11547 SMR:Q5BK74
Ensembl:ENSRNOT00000015776 GeneID:298559 KEGG:rno:298559
UCSC:RGD:1311369 InParanoid:Q5BK74 NextBio:643942
Genevestigator:Q5BK74 Uniprot:Q5BK74
Length = 348
Score = 179 (68.1 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 74/334 (22%), Positives = 146/334 (43%)
Query: 35 LDQLHKSSITCQLLVSTQLVRHLLPLTKHPRQK-IQDTASELILSWRSLFLEQMKGDEEN 93
L +L+ ++ QLL +T++ + + KH K + A LI +W+ L L+ + +
Sbjct: 30 LKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRL-LDSPRTTK-- 86
Query: 94 GSFAICGEIKSANVEIAKGKRQITSDEFEQALDVEVVKVRRVDQKGAPRSKK-LVGSEFI 152
GE + A + K ++ + S ++ + + + + G P++++ V S
Sbjct: 87 ------GE-REAREKAKKKEKGLGSSGWKPEAGLSPPRKK---EGGEPKTRRDSVDSRSS 136
Query: 153 VTEETN--SLDNVDAEAIREEKPASAVVPQK-LVSMIKC---NDYFR-ERIREKLYKALS 205
T SL+ ++ + E P + P + C + Y + +R+K + LS
Sbjct: 137 TTSSPKRPSLERSNSSRSKVETPKTPSSPSTPTFAPAVCLLASCYLTGDSVRDKCVEMLS 196
Query: 206 KVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDF 265
+ +++ +D CD ++A E ++++ + Y + RS + NL DP NP
Sbjct: 197 AAL-KAEDDFKDYGVNCD--KLASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGL 253
Query: 266 RRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRY 325
RR VL G + PE + KM++EEM SD R L + +E + + GG + ++
Sbjct: 254 RRNVLSGTISPELIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLLRCSKC 313
Query: 326 MCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYWE 359
C + + D+ + + C C W+
Sbjct: 314 KKKNCTYNQVQTRSADEPMTTF-VLCNECGNRWK 346
>UNIPROTKB|F1NP36 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:AADN02021697 EMBL:AADN02021698 IPI:IPI00598591
Ensembl:ENSGALT00000024655 ArrayExpress:F1NP36 Uniprot:F1NP36
Length = 309
Score = 164 (62.8 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 56/229 (24%), Positives = 100/229 (43%)
Query: 136 DQKGAPRSKKLVGSEFIVTEETNSLDNVDAEAIREEKPASAVVPQKLVSMIKCNDYFRER 195
++K P S E EE++S N + P+++ +P +D R +
Sbjct: 92 EKKKEPASSSQNSPE--AREESSSSSNSSSRKEEGSAPSNSFIPS-FPRAPSTSDSVRVK 148
Query: 196 IREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILF 255
RE L AL + ++ G I A++ +F++ ++ Y+ + RS +
Sbjct: 149 CREMLSAALRTGDDYIAIGADEEELGSQ-IE---EAKAPIFQELKNTDMKYKNRVRSRIA 204
Query: 256 NLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGY 315
NL D +NP+ R+ VL G++ P+ KM++EEM SD + + + + KE + + GG
Sbjct: 205 NLKDAKNPNLRKNVLCGNIPPDKFAKMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGT 264
Query: 316 LGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAKR-----IKCLNCYQYWE 359
+ + CG+C KK + Q SA + C C W+
Sbjct: 265 -----QTDLFTCGKC-KKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 307
Score = 51 (23.0 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 29 AQCIAALDQLHKSSITCQLLVSTQLVRHLLPLTKHPR-QKIQDTASELILSWRSLFLEQM 87
A + L +L +T +LL +T++ + + K +++ A LI SW+ L L+
Sbjct: 26 AGALDLLKELKNIPMTLELLQTTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKL-LDGP 84
Query: 88 KGDEEN 93
D+++
Sbjct: 85 STDKDS 90
>UNIPROTKB|F1MIT2 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005654 GO:GO:0005730 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
IPI:IPI00689567 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:DAAA02038289 EMBL:DAAA02038290
Ensembl:ENSBTAT00000004499 Uniprot:F1MIT2
Length = 280
Score = 157 (60.3 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 52/210 (24%), Positives = 94/210 (44%)
Query: 155 EETNSLDNVDAEAIREEKPASAVVPQKLVSMIKCNDYFRERIREKLYKALSKVSGEVDEE 214
EE++S N+ + ++E A +D R + RE L AL +G D+
Sbjct: 84 EESSSSGNMSSR--KDETNARDTYVSSFPRAPSTSDSVRLKCREMLAAALR--TG--DDY 137
Query: 215 VQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHV 274
+ G D + E ++++ ++ Y+ + RS + NL D +NP+ R+ VL G++
Sbjct: 138 IAI---GADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNI 194
Query: 275 KPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKK 334
P+ +M++EEM SD + + + + KE + + GG + + CG+C KK
Sbjct: 195 PPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGT-----QTDLFTCGKC-KKK 248
Query: 335 TTNHGNDQNSSAKR-----IKCLNCYQYWE 359
+ Q SA + C C W+
Sbjct: 249 NCTYTQVQTRSADEPMTTFVVCNECGNRWK 278
Score = 54 (24.1 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 29 AQCIAALDQLHKSSITCQLLVSTQLVRHLLPLTKHPR-QKIQDTASELILSWRSLFLEQM 87
A + L +L +T +LL ST++ + + K +++ A LI SW+ L L+
Sbjct: 1 AGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKL-LDGP 59
Query: 88 KGDEEN 93
D+++
Sbjct: 60 STDKDS 65
>UNIPROTKB|E2RIY6 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:KGLDCSD EMBL:AAEX03001757
Ensembl:ENSCAFT00000021079 Uniprot:E2RIY6
Length = 348
Score = 175 (66.7 bits), Expect = 8.2e-11, P = 8.2e-11
Identities = 77/333 (23%), Positives = 137/333 (41%)
Query: 32 IAALDQLHKSSITCQLLVSTQLVRHLLPLTKHPRQK-IQDTASELILSWRSLFLEQMKGD 90
+ L +L+ ++ QLL +T++ + + KH K + A LI +W+ L
Sbjct: 27 LGLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLDSPGPPK 86
Query: 91 EENGSFAICGEIKSANVEIAKGKRQITSDEFEQALDVEVVKVRR--VDQKGAPRSKKLVG 148
E G + K ++ + K + T + E K RR VD K + S
Sbjct: 87 GEKGEERDKAK-KEKGLDCSNWKPE-TGLSPPRKKRAEEPKERRDSVDSKSSATSSPKRP 144
Query: 149 SEFIVTEETNSLDNVDAEAIREE-KPASAVVPQKLVSMIKCNDYFR-ERIREKLYKALSK 206
S E +NS AE + P++ + + C Y + +R+K + LS
Sbjct: 145 S----MERSNS-GKSKAETPKTPTSPSTPTFAPSVCLLAPC--YLTGDSVRDKCVEMLSA 197
Query: 207 VSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFR 266
+ +++ +D CD ++A E + E+ + Y + RS + NL DP NP R
Sbjct: 198 AL-KAEDDYKDYGVNCD--KMASEIEDHILEELKSTDMKYRNRVRSRISNLKDPRNPSLR 254
Query: 267 RKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYM 326
R VL G + + KM++EEM SD R L + +E + + GG ++ ++
Sbjct: 255 RNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCK 314
Query: 327 CGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYWE 359
C + + D+ + + C C W+
Sbjct: 315 KKNCTYNQVQTRSADEPMTTF-VLCNECGNRWK 346
>UNIPROTKB|Q29RL9 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 EMBL:BC114117 IPI:IPI00689567 RefSeq:NP_001039390.1
UniGene:Bt.13876 ProteinModelPortal:Q29RL9 SMR:Q29RL9 STRING:Q29RL9
PRIDE:Q29RL9 GeneID:505722 KEGG:bta:505722 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 InParanoid:Q29RL9 KO:K03145
OrthoDB:EOG4SN1PH NextBio:20867283 TIGRFAMs:TIGR01385
Uniprot:Q29RL9
Length = 301
Score = 157 (60.3 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 52/210 (24%), Positives = 94/210 (44%)
Query: 155 EETNSLDNVDAEAIREEKPASAVVPQKLVSMIKCNDYFRERIREKLYKALSKVSGEVDEE 214
EE++S N+ + ++E A +D R + RE L AL +G D+
Sbjct: 105 EESSSSGNMSSR--KDETNARDTYVSSFPRAPSTSDSVRLKCREMLAAALR--TG--DDY 158
Query: 215 VQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHV 274
+ G D + E ++++ ++ Y+ + RS + NL D +NP+ R+ VL G++
Sbjct: 159 IAI---GADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNI 215
Query: 275 KPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKK 334
P+ +M++EEM SD + + + + KE + + GG + + CG+C KK
Sbjct: 216 PPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGT-----QTDLFTCGKC-KKK 269
Query: 335 TTNHGNDQNSSAKR-----IKCLNCYQYWE 359
+ Q SA + C C W+
Sbjct: 270 NCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
Score = 54 (24.1 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 29 AQCIAALDQLHKSSITCQLLVSTQLVRHLLPLTKHPR-QKIQDTASELILSWRSLFLEQM 87
A + L +L +T +LL ST++ + + K +++ A LI SW+ L L+
Sbjct: 22 AGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKL-LDGP 80
Query: 88 KGDEEN 93
D+++
Sbjct: 81 STDKDS 86
>MGI|MGI:1196908 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 MGI:MGI:1196908
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
EMBL:AL935264 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 OMA:KGLDCSD ChiTaRS:TCEA3 EMBL:D00926
EMBL:AJ223472 EMBL:AK002319 EMBL:AK007437 EMBL:AK019024
EMBL:BC010807 IPI:IPI00137142 RefSeq:NP_035672.1 UniGene:Mm.112
PDB:1WJT PDBsum:1WJT ProteinModelPortal:P23881 SMR:P23881
STRING:P23881 PhosphoSite:P23881 PRIDE:P23881
Ensembl:ENSMUST00000102533 GeneID:21401 KEGG:mmu:21401
UCSC:uc008vhv.2 InParanoid:A2AW46 EvolutionaryTrace:P23881
NextBio:300664 Bgee:P23881 CleanEx:MM_TCEA3 Genevestigator:P23881
GermOnline:ENSMUSG00000001604 Uniprot:P23881
Length = 347
Score = 174 (66.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 76/331 (22%), Positives = 135/331 (40%)
Query: 35 LDQLHKSSITCQLLVSTQLVRHLLPLTKHPRQK-IQDTASELILSWRSLF--LEQMKGDE 91
L +L+ ++ QLL +T++ + + KH K + A LI +W+ L KG+
Sbjct: 30 LKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLDSPRTTKGER 89
Query: 92 ENGSFAICGEIKSANVEIAKGKRQITSDEFEQALDVEVVKVRR--VDQKGAPRSKKLVGS 149
E A K + + K + + E K RR VD + + S S
Sbjct: 90 EEREKAK----KEKGLGCSDWKPEAGLSPPRKKGGGEP-KTRRDSVDSRSSTTSSPKRPS 144
Query: 150 EFIVTEETNSLDNVDAEAIREEKPASAVVPQKLVSMIKCNDYFR-ERIREKLYKALSKVS 208
E +NS + P++ + + C Y + +R+K + LS
Sbjct: 145 ----LERSNSSKSKVETPTTPSSPSTPTFAPAVCLLAPC--YLTGDSVRDKCVEMLSAAL 198
Query: 209 GEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRK 268
+ ++ +D CD ++A E ++++ + Y + RS + NL DP NP RR
Sbjct: 199 -KAEDNFKDYGVNCD--KLASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRN 255
Query: 269 VLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCG 328
VL G + PE + KM++EEM SD R L + +E + + GG + ++
Sbjct: 256 VLSGAISPELIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKK 315
Query: 329 RCGHKKTTNHGNDQNSSAKRIKCLNCYQYWE 359
C + + D+ + + C C W+
Sbjct: 316 NCTYNQVQTRSADEPMTTF-VLCNECGNRWK 345
>UNIPROTKB|P23193 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0016032 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0030218 GO:GO:0006368 Reactome:REACT_1788 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:X62585 EMBL:X57198
EMBL:M81601 EMBL:X73534 EMBL:AK290454 EMBL:CR542221 EMBL:BT019995
EMBL:AC100821 EMBL:BC072460 IPI:IPI00218106 IPI:IPI00333215
PIR:S17361 PIR:S26831 PIR:S34159 RefSeq:NP_006747.1
RefSeq:NP_958845.1 UniGene:Hs.491745 PDB:1TFI PDB:3NDQ PDBsum:1TFI
PDBsum:3NDQ ProteinModelPortal:P23193 SMR:P23193 DIP:DIP-48480N
IntAct:P23193 STRING:P23193 PhosphoSite:P23193 DMDM:1174652
PaxDb:P23193 PRIDE:P23193 DNASU:6917 Ensembl:ENST00000396401
Ensembl:ENST00000521604 GeneID:6917 KEGG:hsa:6917 UCSC:uc003xru.3
UCSC:uc003xrv.3 GeneCards:GC08M054929 H-InvDB:HIX0057264
HGNC:HGNC:11612 HPA:HPA043786 MIM:601425 neXtProt:NX_P23193
PharmGKB:PA36371 InParanoid:P23193 OMA:MKNPNLR
EvolutionaryTrace:P23193 GenomeRNAi:6917 NextBio:27057
PMAP-CutDB:P23193 ArrayExpress:P23193 Bgee:P23193 CleanEx:HS_TCEA1
Genevestigator:P23193 GermOnline:ENSG00000197214 Uniprot:P23193
Length = 301
Score = 156 (60.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 53/210 (25%), Positives = 92/210 (43%)
Query: 155 EETNSLDNVDAEAIREEKPASAVVPQKLVSMIKCNDYFRERIREKLYKALSKVSGEVDEE 214
EE+ S NV ++E A +D R + RE L AL +G D+
Sbjct: 105 EESTSSGNVSNR--KDETNARDTYVSSFPRAPSTSDSVRLKCREMLAAALR--TG--DDY 158
Query: 215 VQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHV 274
+ G D + E ++++ ++ Y+ + RS + NL D +NP+ R+ VL G++
Sbjct: 159 IAI---GADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNI 215
Query: 275 KPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKK 334
P+ +M++EEM SD + + + + KE + + GG + + CG+C KK
Sbjct: 216 PPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGT-----QTDLFTCGKC-KKK 269
Query: 335 TTNHGNDQNSSAKR-----IKCLNCYQYWE 359
+ Q SA + C C W+
Sbjct: 270 NCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
Score = 53 (23.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 29 AQCIAALDQLHKSSITCQLLVSTQLVRHLLPLTKHPR-QKIQDTASELILSWRSL 82
A + L +L +T +LL ST++ + + K +++ A LI SW+ L
Sbjct: 22 AGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKL 76
>FB|FBgn0030663 [details] [associations]
symbol:CG8117 species:7227 "Drosophila melanogaster"
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017890 Pfam:PF01096 Pfam:PF07500 PIRSF:PIRSF006704
PROSITE:PS51133 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0022008 EMBL:AE014298 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003676 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0032784 eggNOG:COG1594 KO:K03145 HSSP:P23193
GeneTree:ENSGT00390000017794 EMBL:BT022128 EMBL:BT023150
RefSeq:NP_573049.2 UniGene:Dm.26636 SMR:Q9VXS6 IntAct:Q9VXS6
MINT:MINT-861025 STRING:Q9VXS6 EnsemblMetazoa:FBtr0074050
GeneID:32499 KEGG:dme:Dmel_CG8117 UCSC:CG8117-RA
FlyBase:FBgn0030663 InParanoid:Q9VXS6 OMA:PEELGSN OrthoDB:EOG4WSTSW
GenomeRNAi:32499 NextBio:778778 Uniprot:Q9VXS6
Length = 162
Score = 153 (58.9 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 42/143 (29%), Positives = 68/143 (47%)
Query: 221 GC-DPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEAL 279
GC DP +A E ++ Y+ + RS L NL DP+NP+ R+K LLG + PE L
Sbjct: 25 GCGDPDDMAAKLEDAIYGDLNGCKVKYKNRIRSRLANLRDPKNPELRQKFLLGQITPEEL 84
Query: 280 IKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTN-H 338
KM+ EEM SD +++ Q+ ++ + + G + ++ C RC + + H
Sbjct: 85 SKMTPEEMASDDMKQMRQKYVQDSINAAQMAKVQGT-----KTDQFKCERCDKRNCSQLH 139
Query: 339 GNDQNSSAKR-IKCLNCYQYWES 360
D + + C C W+S
Sbjct: 140 IRDGDEPIITFVICDECGNRWKS 162
>UNIPROTKB|Q148K0 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 EMBL:BC118232 IPI:IPI00711628
RefSeq:NP_001068797.1 UniGene:Bt.26042 ProteinModelPortal:Q148K0
SMR:Q148K0 STRING:Q148K0 PRIDE:Q148K0 GeneID:507729 KEGG:bta:507729
CTD:6919 InParanoid:Q148K0 NextBio:20868199 Uniprot:Q148K0
Length = 300
Score = 169 (64.5 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 66/257 (25%), Positives = 108/257 (42%)
Query: 114 RQITSDEFEQALDVEVVKV--RRVDQKGAPRSKKLVGSEFIVTEETNSLDNVDAEAIREE 171
R+ +SDE L ++K + +D A ++ G + + + D R E
Sbjct: 57 RKQSSDEEVVTLAKSLIKSWKKLLDASDAKARERRRGGSLPTSSSKEASEAQDPSRKRPE 116
Query: 172 KPASAVVPQKLVSM----IKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRV 227
P P ++ + + C D R + RE L AL + D + G D +
Sbjct: 117 LPRMPSTP-RITTFPPVPVTC-DAVRTKCREMLTAAL-----QTDHD--HVAIGADCECL 167
Query: 228 AITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEM 287
A E +F G++ Y+ + RS L NL D +NP RRKVL G + P+ + M+SEEM
Sbjct: 168 AGQIEECIFRDVGNTDMKYKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEM 227
Query: 288 VSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAK 347
SD + + + + KE + + GG + + CG+C KK + Q S+
Sbjct: 228 ASDELKEIRKAMTKEAIREHQMARTGGT-----QTDLFTCGKC-RKKNCTYTQVQTRSSD 281
Query: 348 R-----IKCLNCYQYWE 359
+ C C W+
Sbjct: 282 EPMTTFVVCNECGNRWK 298
>UNIPROTKB|F1PPX8 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 OMA:AVGADCE
EMBL:AAEX03014175 Ensembl:ENSCAFT00000024122 Uniprot:F1PPX8
Length = 274
Score = 166 (63.5 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 67/257 (26%), Positives = 109/257 (42%)
Query: 114 RQITSDEFEQALDVEVVKV--RRVDQKGAP-RSKKLVGSEFIVTEETNSLDNVDAEAIRE 170
R+ +SDE AL ++K + +D A R ++ G + + + D R
Sbjct: 33 RKQSSDEEVIALAKSLIKSWKKLLDASDAKAREQRRAGPP-PTSSSKEAPEAKDPSRKRP 91
Query: 171 EKPASAVVPQKLVSM----IKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIR 226
E P P ++ + + C D R + RE L AL + D + C+ +
Sbjct: 92 ELPRVPSAP-RITTFPPVPVTC-DAVRNKCREMLTAAL-----QTDHDHMAVGADCEGLS 144
Query: 227 VAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEE 286
I E +F G++ Y+ + RS + NL D +NPD RR VL G + P+ + M+SEE
Sbjct: 145 AQI--EECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGVITPQQIAVMTSEE 202
Query: 287 MVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSA 346
M SD + + + + KE + + GG + + CGRC K T SS
Sbjct: 203 MASDELKEIRKAMTKEAIREHQMARTGGT-----QTDLFTCGRCRRKNCTYTQVQTRSSD 257
Query: 347 KR----IKCLNCYQYWE 359
+ + C C W+
Sbjct: 258 EPMTTFVVCNECGNRWK 274
>UNIPROTKB|F1NBF9 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:AADN02019186
EMBL:AADN02019187 IPI:IPI00585750 Ensembl:ENSGALT00000009608
Uniprot:F1NBF9
Length = 312
Score = 166 (63.5 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 73/292 (25%), Positives = 133/292 (45%)
Query: 52 QLVRHLLPLTKHPRQKIQDTASELILSWRSL--FLEQMKGDEENGSFAICGEIKSANVEI 109
++VR L K +K D A +L+ +S+ L+ ++ S + S I
Sbjct: 32 EIVRIAKRLDKMVAKKSADGAMDLLKELKSMPMTLDLLQSTRIGMSVNALRKQSSDEEVI 91
Query: 110 AKGKRQITSDEFEQALDVEVVKVRRVDQKGAPRSKKLVGSEFIVTEET-NSLDNVDAEAI 168
A K I S +++ LD++ + + ++K ++ L S ++ET NS D +
Sbjct: 92 ALAKSLIKS--WKKLLDLDASEEKSEEKK---KNLSLPTSS---SKETGNSRDQSSNK-- 141
Query: 169 REEKPASAVVPQKLVSM----IKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDP 224
R+E P + P K+ + + C D R + RE L AL + D++ G D
Sbjct: 142 RQEPPKTPTTP-KITTFPPAPVTC-DAVRNKCREMLTTAL-----QADDDYI--AIGADC 192
Query: 225 IRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSS 284
+A E +++ ++ Y+ + RS + NL D +NP+ ++ VL G + PE + M+S
Sbjct: 193 EHIAAQIEECIYQDIKNTDMKYKNRVRSRISNLKDSKNPELKKNVLCGAITPEQIAVMTS 252
Query: 285 EEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTT 336
EEM S+ + + + + KE + + GG + + CG+C K T
Sbjct: 253 EEMASNELKEIRKAMTKEAIREHQMAKTGGT-----QTDLFTCGKCKKKNCT 299
>MGI|MGI:1196624 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IMP] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 EMBL:M18209 MGI:MGI:1196624 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:M18210 EMBL:D00925
EMBL:BC006022 EMBL:BC061490 EMBL:BC083127 IPI:IPI00121887
IPI:IPI00224168 PIR:A29950 RefSeq:NP_001153222.1
RefSeq:NP_001153223.1 RefSeq:NP_035671.1 UniGene:Mm.207263
ProteinModelPortal:P10711 SMR:P10711 STRING:P10711
PhosphoSite:P10711 PaxDb:P10711 PRIDE:P10711
Ensembl:ENSMUST00000081551 GeneID:21399 KEGG:mmu:21399
InParanoid:P10711 ChiTaRS:TCEA1 NextBio:300656 Bgee:P10711
CleanEx:MM_TCEA1 Genevestigator:P10711
GermOnline:ENSMUSG00000067869 Uniprot:P10711
Length = 301
Score = 162 (62.1 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 54/210 (25%), Positives = 94/210 (44%)
Query: 155 EETNSLDNVDAEAIREEKPASAVVPQKLVSMIKCNDYFRERIREKLYKALSKVSGEVDEE 214
EE++S NV + ++E A +D R + RE L AL +G D+
Sbjct: 105 EESSSSSNVSSR--KDETNARDTYVSSFPRAPSTSDSVRLKCREMLAAALR--TG--DDY 158
Query: 215 VQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHV 274
V G D + E ++++ ++ Y+ + RS + NL D +NP+ R+ VL G++
Sbjct: 159 VAI---GADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNI 215
Query: 275 KPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKK 334
P+ +M++EEM SD + + + + KE + + GG + + CG+C KK
Sbjct: 216 PPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGT-----QTDLFTCGKC-KKK 269
Query: 335 TTNHGNDQNSSAKR-----IKCLNCYQYWE 359
+ Q SA + C C W+
Sbjct: 270 NCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>UNIPROTKB|E2QVN6 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
OMA:MKNPNLR GeneTree:ENSGT00390000017794 EMBL:AAEX03015788
Ensembl:ENSCAFT00000039344 Uniprot:E2QVN6
Length = 301
Score = 161 (61.7 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 54/210 (25%), Positives = 94/210 (44%)
Query: 155 EETNSLDNVDAEAIREEKPASAVVPQKLVSMIKCNDYFRERIREKLYKALSKVSGEVDEE 214
EE++S NV + ++E A +D R + RE L AL +G D+
Sbjct: 105 EESSSSGNVSSR--KDETNARDTYVSSFPRAPSTSDSVRLKCREMLAAALR--TG--DDY 158
Query: 215 VQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHV 274
V G D + E ++++ ++ Y+ + RS + NL D +NP+ R+ VL G++
Sbjct: 159 VAI---GADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNI 215
Query: 275 KPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKK 334
P+ +M++EEM SD + + + + KE + + GG + + CG+C KK
Sbjct: 216 PPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGT-----QTDLFTCGKC-KKK 269
Query: 335 TTNHGNDQNSSAKR-----IKCLNCYQYWE 359
+ Q SA + C C W+
Sbjct: 270 NCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>UNIPROTKB|D4A6D1 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385 IPI:IPI00950445
Ensembl:ENSRNOT00000064494 ArrayExpress:D4A6D1 Uniprot:D4A6D1
Length = 273
Score = 156 (60.0 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 58/252 (23%), Positives = 106/252 (42%)
Query: 114 RQITSDEFEQALDVEVVKV--RRVDQKGAPRSKKLVGSEFIVTEETNSLDNVDAEAIREE 171
R+ +SDE AL ++K + +D + G+ + ++ D + +
Sbjct: 30 RKQSSDEELIALAKSLIKSWKKLLDVSDGKSRDQGRGTPLPTSSSKDASGTTDLSCKKPD 89
Query: 172 KPASAVVPQKLVSM----IKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRV 227
P ++ P ++ + I C D R + RE L AL V V C+ +
Sbjct: 90 PPRTSSTP-RITTFPQVPITC-DAVRNKCREMLTLALQTDHDHVAVGVS-----CEHLSS 142
Query: 228 AITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEM 287
I E ++ + G G Y+ + RS + NL D +NP RR VL G + P+ + M+SEEM
Sbjct: 143 QIE-EYILLDLSGSQIG-YKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEM 200
Query: 288 VSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAK 347
SD + + + + KE + + GG ++ + C + + +D+ +
Sbjct: 201 ASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTY 260
Query: 348 RIKCLNCYQYWE 359
+ C C W+
Sbjct: 261 -VVCNECGNRWK 271
>RGD|1309880 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=ISO] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:1309880 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 OMA:MKNPNLR EMBL:BC099141 IPI:IPI00358677
RefSeq:NP_001020906.1 RefSeq:XP_002728223.1 RefSeq:XP_003752832.1
UniGene:Rn.205137 UniGene:Rn.6738 ProteinModelPortal:Q4KLL0
SMR:Q4KLL0 STRING:Q4KLL0 PhosphoSite:Q4KLL0 PRIDE:Q4KLL0
Ensembl:ENSRNOT00000010893 GeneID:362479 GeneID:498453
KEGG:rno:362479 KEGG:rno:498453 UCSC:RGD:1309880
GeneTree:ENSGT00390000017794 InParanoid:Q4KLL0 NextBio:680080
Genevestigator:Q4KLL0 GermOnline:ENSRNOG00000005869 Uniprot:Q4KLL0
Length = 301
Score = 157 (60.3 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 53/210 (25%), Positives = 94/210 (44%)
Query: 155 EETNSLDNVDAEAIREEKPASAVVPQKLVSMIKCNDYFRERIREKLYKALSKVSGEVDEE 214
EE++S +V + ++E A +D R + RE L AL +G D+
Sbjct: 105 EESSSSSHVSSR--KDETNARDTYVSSFPRAPSTSDSVRLKCREMLAAALR--TG--DDY 158
Query: 215 VQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHV 274
V G D + E ++++ ++ Y+ + RS + NL D +NP+ R+ VL G++
Sbjct: 159 VAI---GADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNI 215
Query: 275 KPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKK 334
P+ +M++EEM SD + + + + KE + + GG + + CG+C KK
Sbjct: 216 PPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGT-----QTDLFTCGKC-KKK 269
Query: 335 TTNHGNDQNSSAKR-----IKCLNCYQYWE 359
+ Q SA + C C W+
Sbjct: 270 NCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>ASPGD|ASPL0000075205 [details] [associations]
symbol:AN4861 species:162425 "Emericella nidulans"
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0001193 "maintenance of transcriptional fidelity during
DNA-dependent transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0031440 "regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0006362 "transcription elongation
from RNA polymerase I promoter" evidence=IEA] [GO:0031564
"transcription antitermination" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0001139 "core RNA
polymerase II recruiting transcription factor activity"
evidence=IEA] [GO:0000993 "RNA polymerase II core binding"
evidence=IEA] [GO:0001012 "RNA polymerase II regulatory region DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0003746 EMBL:BN001303 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
HOGENOM:HOG000195015 TIGRFAMs:TIGR01385 OMA:SKWRNEV
EnsemblFungi:CADANIAT00005544 Uniprot:C8V9V9
Length = 304
Score = 152 (58.6 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 41/137 (29%), Positives = 64/137 (46%)
Query: 228 AITAESLMFEKWG-HSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEE 286
A E+ ++ +G + Y K RS+ NL + NP R +VL V PE +KM+ EE
Sbjct: 172 AAAVEAAAYDAYGPETKEPYRTKIRSLFQNLKNKSNPTLRVRVLSNEVTPERFVKMTHEE 231
Query: 287 MVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSA 346
+ SD R +++I+KE + + ST CG+CG +K T + Q SA
Sbjct: 232 LRSDEQREKDRKIQKENMDKAMVAQAERSI-----STSLQCGKCGQRKVT-YTEAQTRSA 285
Query: 347 KR-----IKCLNCYQYW 358
C++C + W
Sbjct: 286 DEPMTLFCTCMHCGKSW 302
Score = 42 (19.8 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 12/54 (22%), Positives = 27/54 (50%)
Query: 29 AQCIAALDQLHKSSITCQ-LLVSTQLVRHLLPLTKHPRQKIQDTASELILSWRS 81
A ++ L +L + + LL ST++ + +H ++ +SE++ WR+
Sbjct: 26 ANIVSLLKELQQGVKASEDLLRSTRVGIIVNKFKQHKAPEVARLSSEIVSKWRN 79
>FB|FBgn0010422 [details] [associations]
symbol:TfIIS "RNA polymerase II elongation factor"
species:7227 "Drosophila melanogaster" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;NAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=NAS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
EMBL:AE014134 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
KO:K03145 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:X53670 EMBL:L26091 EMBL:AY051843
PIR:S55899 RefSeq:NP_476967.1 UniGene:Dm.3045
ProteinModelPortal:P20232 SMR:P20232 DIP:DIP-23586N
MINT:MINT-924728 STRING:P20232 PaxDb:P20232 PRIDE:P20232
EnsemblMetazoa:FBtr0080722 EnsemblMetazoa:FBtr0332475 GeneID:34883
KEGG:dme:Dmel_CG3710 CTD:34883 FlyBase:FBgn0010422
InParanoid:P20232 OrthoDB:EOG4GXD3M PhylomeDB:P20232
GenomeRNAi:34883 NextBio:790684 Bgee:P20232 GermOnline:CG3710
Uniprot:P20232
Length = 313
Score = 157 (60.3 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 52/191 (27%), Positives = 83/191 (43%)
Query: 170 EEKPASAVVPQKLVSMIKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGC-DPIRVA 228
+EK S Q D R + RE L AL K+ GEV E GC +P +A
Sbjct: 131 KEKKGSTSSSQTSFPSGGMTDAVRIKCREMLATAL-KI-GEVPE-------GCGEPEEMA 181
Query: 229 ITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMV 288
E ++ ++ ++ Y+ + RS + NL DP+NP R + G V + L KM+ EEM
Sbjct: 182 AELEDAIYSEFNNTDMKYKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMA 241
Query: 289 SDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAKR 348
SD ++L ++ KE +D L G + + C + + D+ +
Sbjct: 242 SDEMKKLREKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTF- 300
Query: 349 IKCLNCYQYWE 359
+ C C W+
Sbjct: 301 VMCNECGNRWK 311
>UNIPROTKB|G1K224 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005813 "centrosome" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:DAAA02036215
EMBL:DAAA02036214 Ensembl:ENSBTAT00000029107 Uniprot:G1K224
Length = 303
Score = 155 (59.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 42/130 (32%), Positives = 62/130 (47%)
Query: 239 W-GHSFGT---YEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRR 294
W G FGT Y+ + RS L NL D +NP RRKVL G + P+ + M+SEEM SD +
Sbjct: 178 WQGVGFGTDMKYKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKE 237
Query: 295 LNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAKR-----I 349
+ + + KE + + GG + + CG+C KK + Q S+ +
Sbjct: 238 IRKAMTKEAIREHQMARTGGT-----QTDLFTCGKC-RKKNCTYTQVQTRSSDEPMTTFV 291
Query: 350 KCLNCYQYWE 359
C C W+
Sbjct: 292 VCNECGNRWK 301
>RGD|61825 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO;TAS]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:61825 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794
CTD:6919 EMBL:D12927 IPI:IPI00339171 PIR:A53004 RefSeq:NP_476439.1
UniGene:Rn.78891 ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 154 (59.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 58/252 (23%), Positives = 106/252 (42%)
Query: 114 RQITSDEFEQALDVEVVKV--RRVDQKGAPRSKKLVGSEFIVTEETNSLDNVDAEAIREE 171
R+ +SDE AL ++K + +D + G+ + ++ D + +
Sbjct: 56 RKQSSDEELIALAKSLIKSWKKLLDVSDGKSRDQGRGTPLPTSSSKDASGTTDLSCKKPD 115
Query: 172 KPASAVVPQKLVSM----IKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRV 227
P ++ P ++ + I C D R + RE L AL V V C+ +
Sbjct: 116 PPRTSSTP-RITTFPQVPITC-DAVRNKCREMLTLALQTDHDHVAVGVS-----CEHLSS 168
Query: 228 AITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEM 287
I E +F G++ Y+ + RS + NL D +NP RR VL G + P+ + M+SEEM
Sbjct: 169 QI--EECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEM 226
Query: 288 VSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAK 347
SD + + + + KE + + GG ++ + C + + +D+ +
Sbjct: 227 ASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTY 286
Query: 348 RIKCLNCYQYWE 359
+ C C W+
Sbjct: 287 -VVCNECGNRWK 297
>UNIPROTKB|Q63799 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D12927 IPI:IPI00339171
PIR:A53004 RefSeq:NP_476439.1 UniGene:Rn.78891
ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 154 (59.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 58/252 (23%), Positives = 106/252 (42%)
Query: 114 RQITSDEFEQALDVEVVKV--RRVDQKGAPRSKKLVGSEFIVTEETNSLDNVDAEAIREE 171
R+ +SDE AL ++K + +D + G+ + ++ D + +
Sbjct: 56 RKQSSDEELIALAKSLIKSWKKLLDVSDGKSRDQGRGTPLPTSSSKDASGTTDLSCKKPD 115
Query: 172 KPASAVVPQKLVSM----IKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRV 227
P ++ P ++ + I C D R + RE L AL V V C+ +
Sbjct: 116 PPRTSSTP-RITTFPQVPITC-DAVRNKCREMLTLALQTDHDHVAVGVS-----CEHLSS 168
Query: 228 AITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEM 287
I E +F G++ Y+ + RS + NL D +NP RR VL G + P+ + M+SEEM
Sbjct: 169 QI--EECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEM 226
Query: 288 VSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAK 347
SD + + + + KE + + GG ++ + C + + +D+ +
Sbjct: 227 ASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTY 286
Query: 348 RIKCLNCYQYWE 359
+ C C W+
Sbjct: 287 -VVCNECGNRWK 297
>MGI|MGI:107368 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 MGI:MGI:107368 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D86081 EMBL:AB010271
IPI:IPI00284630 PIR:JC5430 RefSeq:NP_033352.1 UniGene:Mm.24245
ProteinModelPortal:Q9QVN7 SMR:Q9QVN7 STRING:Q9QVN7
PhosphoSite:Q9QVN7 PaxDb:Q9QVN7 PRIDE:Q9QVN7
Ensembl:ENSMUST00000103042 GeneID:21400 KEGG:mmu:21400
InParanoid:Q9QVN7 OMA:SKWRNEV NextBio:300660 Bgee:Q9QVN7
CleanEx:MM_TCEA2 Genevestigator:Q9QVN7
GermOnline:ENSMUSG00000059540 Uniprot:Q9QVN7
Length = 299
Score = 153 (58.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 59/253 (23%), Positives = 109/253 (43%)
Query: 114 RQITSDEFEQALDVEVVKV--RRVDQKGAPRSKKLVGSEFIVTEETNSLDNVDAEAIREE 171
R+ +SDE AL ++K + +D + G+ + ++ D + +
Sbjct: 56 RKQSSDEELIALAKSLIKSWKKLLDVSDGKSRNQGRGTPLPTSSSKDASRTTDLSCKKPD 115
Query: 172 KPASAVVPQKLVSM----IKCNDYFRERIREKLYKALSKVSGEVDEE-VQDKLNGCDPIR 226
P + P ++ + I C D R + RE L AL + D + V +N C+ +
Sbjct: 116 PPRTPSTP-RITTFPQVPITC-DAVRNKCREMLTLAL-----QTDHDHVAVGVN-CEHLS 167
Query: 227 VAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEE 286
I E +F G++ Y+ + RS + NL D +NP RR VL G + P+ + M+SEE
Sbjct: 168 SQI--EECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEE 225
Query: 287 MVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSA 346
M SD + + + + KE + + GG ++ + C + + +D+ +
Sbjct: 226 MASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTT 285
Query: 347 KRIKCLNCYQYWE 359
+ C C W+
Sbjct: 286 Y-VVCNECGNRWK 297
>UNIPROTKB|F1RSG8 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030218 "erythrocyte
differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 CTD:6917 KO:K03145
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:CU179651 EMBL:CU571052 RefSeq:NP_001230609.1 UniGene:Ssc.1495
Ensembl:ENSSSCT00000006860 GeneID:100157724 KEGG:ssc:100157724
Uniprot:F1RSG8
Length = 300
Score = 151 (58.2 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 46/176 (26%), Positives = 81/176 (46%)
Query: 189 NDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEV 248
+D R + RE L AL +GE + G D + E ++++ ++ Y+
Sbjct: 136 SDSVRLKCREMLAAALR--TGEDYIAI-----GADEEELGSQIEEAIYQEIRNTDMKYKN 188
Query: 249 KYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASDRY 308
+ RS + NL D +NP+ R+ VL G++ P+ +M++EEM SD + + + + KE +
Sbjct: 189 RVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQ 248
Query: 309 LPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAKR-----IKCLNCYQYWE 359
+ GG + + CG+C KK + Q SA + C C W+
Sbjct: 249 MAKTGGT-----QTDLFTCGKC-KKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 298
>WB|WBGene00012000 [details] [associations]
symbol:T24H10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:Z54216 PIR:T25250
RefSeq:NP_495941.1 UniGene:Cel.14290 ProteinModelPortal:P52652
SMR:P52652 STRING:P52652 PaxDb:P52652 EnsemblMetazoa:T24H10.1
GeneID:174450 KEGG:cel:CELE_T24H10.1 UCSC:T24H10.1 CTD:174450
WormBase:T24H10.1 InParanoid:P52652 OMA:KTNIGIK NextBio:884086
Uniprot:P52652
Length = 308
Score = 151 (58.2 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 74/264 (28%), Positives = 110/264 (41%)
Query: 109 IAKGKRQITSDEFEQALDVEVVKVRRVDQKGAPRSKKLVGSEFIVTEETNSLDNVDAEAI 168
+AK + I D ++ +D K + D GAP +KK + V E ++A
Sbjct: 66 VAKRAKNIIKD-WKNVVDG---KSKSQDDGGAPPAKK--HRKESVEEAKPEKKKIEAPYK 119
Query: 169 REE---KP------ASAVVPQKLVSMIKCNDYFRERIREKLYKALSKVSGEVDEEVQDKL 219
R E +P ASA P K + ND R + + L AL G++ Q L
Sbjct: 120 RPEPSSRPEIVAQFASASFPPKHLE----NDETRLKSAQLLLSALR--FGDMP---QGTL 170
Query: 220 NGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEAL 279
DP +A+ E ++ + +Y RS +FNL D +N R VL G V+ E
Sbjct: 171 ---DPEELAVQIEEKLYSVHRDTNKSYSAAVRSRIFNLRDKKNLALRENVLTGVVRAEKF 227
Query: 280 IKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHG 339
M+SEEM S R + + KE + + + G P S + CG+CG K T
Sbjct: 228 ATMTSEEMASAEIREMRDKFTKEAILEHQMSVQQGT--P---SDMFKCGKCGKKNCTYTQ 282
Query: 340 NDQNSSAKRIK----CLNCYQYWE 359
SS + + CL C W+
Sbjct: 283 LQTRSSDEPMTTFVFCLECGNRWK 306
>ZFIN|ZDB-GENE-040426-1860 [details] [associations]
symbol:tcea3 "transcription elongation factor A
(SII), 3" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-1860 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
EMBL:CR855299 EMBL:FP102461 EMBL:BC065444 IPI:IPI00496427
RefSeq:NP_991246.1 UniGene:Dr.85211 SMR:Q6P0U5
Ensembl:ENSDART00000006061 GeneID:402983 KEGG:dre:402983
InParanoid:Q6P0U5 NextBio:20816790 Uniprot:Q6P0U5
Length = 409
Score = 152 (58.6 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 43/171 (25%), Positives = 79/171 (46%)
Query: 194 ERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSI 253
+ IR+K + L+ D++ +D C+ + I E ++++ + Y+ + RS
Sbjct: 246 DSIRDKCIEMLTAAL-RTDDDYKDYGTNCEAMGAEI--EDYIYQETKATDMKYKNRVRSR 302
Query: 254 LFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKG 313
+ NL DP+NP+ R+ VL G ++ + M++EEM SD ++L + +E + + G
Sbjct: 303 ISNLKDPKNPNLRKNVLAGAIELSRIASMTAEEMASDELKQLRNVLTQEAIREHQMAKTG 362
Query: 314 GYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAKR-----IKCLNCYQYWE 359
G + CG+C KK + Q SA + C C W+
Sbjct: 363 GTTTDLLQ-----CGKC-KKKNCTYNQVQTRSADEPMTTFVLCNECGNRWK 407
>UNIPROTKB|I3L6H4 [details] [associations]
symbol:I3L6H4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 GeneTree:ENSGT00390000017794
Ensembl:ENSSSCT00000029692 Uniprot:I3L6H4
Length = 111
Score = 127 (49.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 30/91 (32%), Positives = 43/91 (47%)
Query: 246 YEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERAS 305
Y + RS + NL DP NP RR VL G + + KM++EEM SD R L + +E
Sbjct: 22 YRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIR 81
Query: 306 DRYLPWKGGYLGPIYHSTRYMCGRCGHKKTT 336
+ + GG ++ C +C K T
Sbjct: 82 EHQMAKTGGTTTDLFQ-----CSKCKKKNCT 107
>UNIPROTKB|I3LFG3 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
EMBL:CU861549 Ensembl:ENSSSCT00000023384 Uniprot:I3LFG3
Length = 222
Score = 137 (53.3 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 227 VAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEE 286
+A E+ +F+ + G Y KYRS+LFNL DP NPD KV+ G V P+ L++M+S +
Sbjct: 24 LAAGIEAALFDLTHATNGHYRTKYRSLLFNLRDPRNPDLFLKVIHGDVTPQGLVRMNSVQ 83
Query: 287 MVSDGSRRLNQQIKK 301
+ R Q +K
Sbjct: 84 LAPQELARWRDQEEK 98
>CGD|CAL0002729 [details] [associations]
symbol:orf19.4537 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0001139 "core RNA polymerase II
recruiting transcription factor activity" evidence=IEA] [GO:0000993
"RNA polymerase II core binding" evidence=IEA] [GO:0001012 "RNA
polymerase II regulatory region DNA binding" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0001193 "maintenance of transcriptional fidelity during
DNA-dependent transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0031440 "regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0006362 "transcription elongation
from RNA polymerase I promoter" evidence=IEA] [GO:0031564
"transcription antitermination" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 CGD:CAL0002729 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
KO:K03145 TIGRFAMs:TIGR01385 EMBL:AACQ01000143 EMBL:AACQ01000140
RefSeq:XP_712868.1 RefSeq:XP_712962.1 ProteinModelPortal:Q59T94
SMR:Q59T94 STRING:Q59T94 GeneID:3645430 GeneID:3645524
KEGG:cal:CaO19.12012 KEGG:cal:CaO19.4537 Uniprot:Q59T94
Length = 305
Score = 141 (54.7 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 35/140 (25%), Positives = 68/140 (48%)
Query: 225 IRVAITAESLMFE-KWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMS 283
+R+AI E+ +++ ++ +Y + RS NL + +NP+ R ++L + P A IKM+
Sbjct: 169 LRIAIEIEAEVYKSEYSKVSDSYRNRLRSFTMNLRNKKNPELRERILSKQILPAAFIKMT 228
Query: 284 SEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQN 343
EM + ++ +++ K+ D G + R+ CG+C HKK + +
Sbjct: 229 PNEMAPEALKKEIEKLHKQNLFDAQ-----GATEKRAVTDRFTCGKCKHKKVSYYQMQTR 283
Query: 344 SSAKRIK----CLNCYQYWE 359
S+ + + C NC W+
Sbjct: 284 SADEPLTTFCTCENCGNRWK 303
>UNIPROTKB|E1BVY1 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 OMA:KQNMTTD EMBL:AADN02002654
EMBL:AADN02002655 IPI:IPI00602717 Ensembl:ENSGALT00000026230
Uniprot:E1BVY1
Length = 2050
Score = 152 (58.6 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 54/168 (32%), Positives = 83/168 (49%)
Query: 129 VVKVRRVDQKGAPRSKKLVGSEFIVTEETNS--LDNVDAEAIREEK-PASAV----VPQK 181
V+ R ++KG SK+ + +V + T S + + + + EK P SA VP
Sbjct: 857 VIPRRSSEEKGEKISKESLS---VVEKSTKSGVHEKQEIKKKKNEKGPTSATHLPNVPAS 913
Query: 182 LVSMIKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGH 241
S + ++ ++E L K L+ S ++ EE K VA E +F +
Sbjct: 914 KPSADQIRHSVKQSLKEILMKRLTDSSLKIPEERAAK--------VATRIERELFSFFRD 965
Query: 242 SFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVS 289
+ Y+ KYRS++FNL DP+N +KVL G V P+ LIKMS EE+ S
Sbjct: 966 TDSKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIKMSPEELAS 1013
>GENEDB_PFALCIPARUM|PF07_0057 [details] [associations]
symbol:PF07_0057 "transcription elongation
factor s-ii, putative" species:5833 "Plasmodium falciparum"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0008023 "transcription elongation
factor complex" evidence=ISS] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0008023 EMBL:AL844506
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 KO:K03145
HSSP:P23193 RefSeq:XP_001349051.1 ProteinModelPortal:Q8IBV2
SMR:Q8IBV2 IntAct:Q8IBV2 MINT:MINT-1727622 PRIDE:Q8IBV2
EnsemblProtists:PF07_0057:mRNA GeneID:2655101 KEGG:pfa:PF07_0057
EuPathDB:PlasmoDB:PF3D7_0714500 HOGENOM:HOG000280919 OMA:KIEMAND
ProtClustDB:CLSZ2432728 Uniprot:Q8IBV2
Length = 403
Score = 130 (50.8 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 49/181 (27%), Positives = 77/181 (42%)
Query: 189 NDYFRERIREKLYKALSKVSGEVDEEV----QDKLNGCDPI-RVAITAESLMFEKWGHSF 243
ND R++ ++ L+KA V G D + + KLN D I + + EK S
Sbjct: 227 NDMHRDKAKQFLFKAF--VVGSSDNLLYFIEKKKLN--DIIYNIECELYKVYMEKRS-SQ 281
Query: 244 GTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKER 303
Y ++ +SI FNL D +NP+F KV + +AL M+S++M SD + ++ +E
Sbjct: 282 KEYNMQLKSIKFNLSDKKNPNFNEKVYSEFISSKALATMNSQDMASDEKKNERKKCLQES 341
Query: 304 ASDRYLPWK-GGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAKR----IKCLNCYQYW 358
W L + C +C T H SS + + CL C W
Sbjct: 342 LLACQSDWDVKNILLKKSRKGEFQCFKCKGYDTIYHQLQTRSSDEPMTTFVTCLKCNNRW 401
Query: 359 E 359
+
Sbjct: 402 K 402
Score = 54 (24.1 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 18/84 (21%), Positives = 40/84 (47%)
Query: 30 QCIAALDQLHKSSITCQLLVSTQLVRHLLPLTKHPRQKIQDTASELILSWRSLFLEQMKG 89
+ I L+ L I +L T++ + LTK + +Q+ + +L+ W+++ +
Sbjct: 42 EVITNLNLLKDVEINKDILRITKIGITVNKLTKINNELVQNLSKDLVEKWKNIAKMEKLS 101
Query: 90 DEENGSFAICGEIKSANVEIAKGK 113
+N + + + KS +E+A K
Sbjct: 102 SLKN--YEMMKKRKSEKIEMANDK 123
>UNIPROTKB|Q8IBV2 [details] [associations]
symbol:PF07_0057 "Transcription elongation factor s-II,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0008023 "transcription elongation factor complex"
evidence=ISS] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0008023 EMBL:AL844506
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 KO:K03145
HSSP:P23193 RefSeq:XP_001349051.1 ProteinModelPortal:Q8IBV2
SMR:Q8IBV2 IntAct:Q8IBV2 MINT:MINT-1727622 PRIDE:Q8IBV2
EnsemblProtists:PF07_0057:mRNA GeneID:2655101 KEGG:pfa:PF07_0057
EuPathDB:PlasmoDB:PF3D7_0714500 HOGENOM:HOG000280919 OMA:KIEMAND
ProtClustDB:CLSZ2432728 Uniprot:Q8IBV2
Length = 403
Score = 130 (50.8 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 49/181 (27%), Positives = 77/181 (42%)
Query: 189 NDYFRERIREKLYKALSKVSGEVDEEV----QDKLNGCDPI-RVAITAESLMFEKWGHSF 243
ND R++ ++ L+KA V G D + + KLN D I + + EK S
Sbjct: 227 NDMHRDKAKQFLFKAF--VVGSSDNLLYFIEKKKLN--DIIYNIECELYKVYMEKRS-SQ 281
Query: 244 GTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKER 303
Y ++ +SI FNL D +NP+F KV + +AL M+S++M SD + ++ +E
Sbjct: 282 KEYNMQLKSIKFNLSDKKNPNFNEKVYSEFISSKALATMNSQDMASDEKKNERKKCLQES 341
Query: 304 ASDRYLPWK-GGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAKR----IKCLNCYQYW 358
W L + C +C T H SS + + CL C W
Sbjct: 342 LLACQSDWDVKNILLKKSRKGEFQCFKCKGYDTIYHQLQTRSSDEPMTTFVTCLKCNNRW 401
Query: 359 E 359
+
Sbjct: 402 K 402
Score = 54 (24.1 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 18/84 (21%), Positives = 40/84 (47%)
Query: 30 QCIAALDQLHKSSITCQLLVSTQLVRHLLPLTKHPRQKIQDTASELILSWRSLFLEQMKG 89
+ I L+ L I +L T++ + LTK + +Q+ + +L+ W+++ +
Sbjct: 42 EVITNLNLLKDVEINKDILRITKIGITVNKLTKINNELVQNLSKDLVEKWKNIAKMEKLS 101
Query: 90 DEENGSFAICGEIKSANVEIAKGK 113
+N + + + KS +E+A K
Sbjct: 102 SLKN--YEMMKKRKSEKIEMANDK 123
>UNIPROTKB|F1SV96 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
OMA:PKDTGSG EMBL:CU861549 Ensembl:ENSSSCT00000004001 Uniprot:F1SV96
Length = 1168
Score = 142 (55.0 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 34/107 (31%), Positives = 57/107 (53%)
Query: 196 IREKLYKALSKVSGEVDEEVQDKLNGCDPIR-VAITAESLMFEKWGHSFGTYEVKYRSIL 254
+R + +A+ +V +E+ D + + +A E+ +F+ + G Y KYRS+L
Sbjct: 543 VRSTVVRAMREVLWSRLQELPDLVLSEGAVEGLAAGIEAALFDLTHATNGHYRTKYRSLL 602
Query: 255 FNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKK 301
FNL DP NPD KV+ G V P+ L++M+S ++ R Q +K
Sbjct: 603 FNLRDPRNPDLFLKVIHGDVTPQGLVRMNSVQLAPQELARWRDQEEK 649
>ASPGD|ASPL0000042794 [details] [associations]
symbol:AN1777 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 GO:GO:0046872 EMBL:BN001307
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 OrthoDB:EOG4PRX19 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 EMBL:AACD01000028
RefSeq:XP_659381.1 ProteinModelPortal:Q5BCF3
EnsemblFungi:CADANIAT00008424 GeneID:2875165 KEGG:ani:AN1777.2
eggNOG:NOG45011 HOGENOM:HOG000215957 OMA:ERDMICC Uniprot:Q5BCF3
Length = 889
Score = 140 (54.3 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 46/164 (28%), Positives = 86/164 (52%)
Query: 140 APRSKKLVGSEFIVTEETNSLDNVDAEAIREEKPASAVVPQKLVSMIKCNDYFRERIREK 199
+P K+ VG + T +T + D E ++ + + + S + F ++I
Sbjct: 249 SPEDKEPVGQD---TNQTPAADTTKTERLKTLEDITNPARRNAASAL--TKVFVDQISSA 303
Query: 200 LYKALSKVS-GEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLM 258
L K+S G+ EEV +L G + A+ ++LM + Y+++ R+ILFN+
Sbjct: 304 LAGGSFKMSEGKTGEEVGQQL-GIS-VEEALY-QNLMGGGGEATSEAYKIQLRAILFNVK 360
Query: 259 DPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKE 302
+NP R ++L+G + P+AL +MSS+EM S+ ++ + +IK+E
Sbjct: 361 --KNPSLRDRLLVGSLTPDALSRMSSQEMASEELQQKDAEIKRE 402
>RGD|1304925 [details] [associations]
symbol:Phf3 "PHD finger protein 3" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
RGD:1304925 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:CH473965 GeneTree:ENSGT00530000063844 CTD:23469
IPI:IPI00366920 RefSeq:NP_001102261.1 UniGene:Rn.21075
Ensembl:ENSRNOT00000015638 GeneID:363210 KEGG:rno:363210
UCSC:RGD:1304925 OrthoDB:EOG4M91RC NextBio:682838 Uniprot:D3ZKI5
Length = 2020
Score = 142 (55.0 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 38/119 (31%), Positives = 61/119 (51%)
Query: 171 EKPASAVVPQKLVSMIKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAIT 230
EK V P ++ D R+ +R L L K + + ++ ++ + +VA
Sbjct: 889 EKGGPNVHPPAAAAIKPSADQIRQSVRHSLKDILMKRLTDSNLKIPEEKSA----KVATK 944
Query: 231 AESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVS 289
E +F + + Y+ KYRS++FNL DP+N +KVL G V P+ LI+MS EE+ S
Sbjct: 945 IEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELAS 1003
>UNIPROTKB|G5E5M1 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 OMA:KQNMTTD EMBL:DAAA02024858
EMBL:DAAA02024859 UniGene:Bt.20639 Ensembl:ENSBTAT00000025476
NextBio:20873627 Uniprot:G5E5M1
Length = 2025
Score = 141 (54.7 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 39/121 (32%), Positives = 61/121 (50%)
Query: 169 REEKPASAVVPQKLVSMIKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVA 228
+ EK V P + + D R+ +R L L K + + +V ++ +VA
Sbjct: 896 KTEKGLPGVHPPAVPASKPSADQIRQSVRHSLKDILMKRLTDSNLKVPEE----KAAKVA 951
Query: 229 ITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMV 288
E +F + + Y+ KYRS++FNL DP+N +KVL G V P+ LI+MS EE+
Sbjct: 952 TKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELA 1011
Query: 289 S 289
S
Sbjct: 1012 S 1012
>UNIPROTKB|E7EVH3 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL050329 HGNC:HGNC:8921 ChiTaRS:PHF3 EMBL:AL445676
EMBL:AL445677 EMBL:AL513043 IPI:IPI00984758
ProteinModelPortal:E7EVH3 SMR:E7EVH3 Ensembl:ENST00000506783
ArrayExpress:E7EVH3 Bgee:E7EVH3 Uniprot:E7EVH3
Length = 1072
Score = 136 (52.9 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 35/100 (35%), Positives = 54/100 (54%)
Query: 190 DYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVK 249
D R+ +R L L K + + +V ++ +VA E +F + + Y+ K
Sbjct: 739 DQIRQSVRHSLKDILMKRLTDSNLKVPEE----KAAKVATKIEKELFSFFRDTDAKYKNK 794
Query: 250 YRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVS 289
YRS++FNL DP+N +KVL G V P+ LI+MS EE+ S
Sbjct: 795 YRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELAS 834
Score = 47 (21.6 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 16/65 (24%), Positives = 32/65 (49%)
Query: 128 EVVKVRRVDQKGAPRSKKLVGSEFIVTEETNSLD-NVDAEAIREEKPASAVV--PQKLVS 184
E++ R+V+Q + + KL + + E+ S D + DA K +++V P +
Sbjct: 125 EMIATRKVEQD-SKETVKLSHEDDHILEDAGSSDISSDAACTNPNKTENSLVGLPSCVDE 183
Query: 185 MIKCN 189
+ +CN
Sbjct: 184 VTECN 188
Score = 40 (19.1 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 108 EIAKGKRQITSDEFEQALDVEVV 130
E A+ RQ+ S EF ++ ++EVV
Sbjct: 217 EDAESNRQLESTEFNKS-NLEVV 238
>UNIPROTKB|E7ER40 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL050329 HGNC:HGNC:8921 ChiTaRS:PHF3 EMBL:AL445676
EMBL:AL445677 EMBL:AL513043 IPI:IPI00966918
ProteinModelPortal:E7ER40 SMR:E7ER40 Ensembl:ENST00000515594
ArrayExpress:E7ER40 Bgee:E7ER40 Uniprot:E7ER40
Length = 861
Score = 136 (52.9 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 35/100 (35%), Positives = 54/100 (54%)
Query: 190 DYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVK 249
D R+ +R L L K + + +V ++ +VA E +F + + Y+ K
Sbjct: 194 DQIRQSVRHSLKDILMKRLTDSNLKVPEE----KAAKVATKIEKELFSFFRDTDAKYKNK 249
Query: 250 YRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVS 289
YRS++FNL DP+N +KVL G V P+ LI+MS EE+ S
Sbjct: 250 YRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELAS 289
>SGD|S000003011 [details] [associations]
symbol:DST1 "General transcription elongation factor TFIIS,
enables RNA polymerase" species:4932 "Saccharomyces cerevisiae"
[GO:0000993 "RNA polymerase II core binding" evidence=IPI]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IMP;IDA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP;IDA]
[GO:0001139 "core RNA polymerase II recruiting transcription factor
activity" evidence=IMP] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=IGI;IDA;IMP] [GO:0001012 "RNA
polymerase II regulatory region DNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=IDA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0001193 "maintenance of transcriptional
fidelity during DNA-dependent transcription elongation from RNA
polymerase II promoter" evidence=IGI;IMP] [GO:0031440 "regulation
of mRNA 3'-end processing" evidence=IGI;IMP] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=IDA]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 SGD:S000003011 GO:GO:0005634 EMBL:BK006941
GO:GO:0046872 GO:GO:0008270 GO:GO:0001012 GO:GO:0045899
GO:GO:0032968 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0006362
GO:GO:0006379 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0031440
GO:GO:0001139 GO:GO:0031564 eggNOG:COG1594 PDB:1PQV PDB:1Y1V
PDB:1Y1Y PDB:3GTM PDB:3PO3 PDBsum:1PQV PDBsum:1Y1V PDBsum:1Y1Y
PDBsum:3GTM PDBsum:3PO3 GO:GO:0042797 GO:GO:0001193
HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OrthoDB:EOG4CC79J EMBL:M36724
EMBL:D12478 EMBL:M60770 EMBL:Z72565 EMBL:X00047 PIR:A42921
RefSeq:NP_011472.1 PDB:1ENW PDB:1EO0 PDBsum:1ENW PDBsum:1EO0
ProteinModelPortal:P07273 SMR:P07273 DIP:DIP-2307N IntAct:P07273
MINT:MINT-1167083 STRING:P07273 PaxDb:P07273 PeptideAtlas:P07273
EnsemblFungi:YGL043W GeneID:852839 KEGG:sce:YGL043W CYGD:YGL043w
OMA:ESEHPPQ EvolutionaryTrace:P07273 NextBio:972417
Genevestigator:P07273 GermOnline:YGL043W Uniprot:P07273
Length = 309
Score = 129 (50.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 60/266 (22%), Positives = 116/266 (43%)
Query: 103 KSANVEIAK-GKRQITSDEFEQALDVEVVKVRRVDQKGAPRSKKLVGSEFIVTEETNSLD 161
KS NVEI+K K+ I+S ++ A++ + R+ Q + + V E N +
Sbjct: 55 KSTNVEISKLVKKMISS--WKDAINKNK-RSRQAQQHHQDHAPGNAEDKTTVGESVNGVQ 111
Query: 162 ---NVDAEAIREEKPASAVVPQKLVSMIKCNDYFRERIREKLYKALSKV-SGEVDEEVQD 217
+ ++A++++K S P+ + + ++R+++ KAL V + E + Q
Sbjct: 112 QPASSQSDAMKQDKYVSTK-PRNSKNDGVDTAIYHHKLRDQVLKALYDVLAKESEHPPQS 170
Query: 218 KLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPE 277
L+ AI +E + Y+ +YR I N++ NPD + K+ G + PE
Sbjct: 171 ILHTAK----AIESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPE 226
Query: 278 ALIKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTN 337
L ++++ L Q+I+ E A +G + + R+ CG+C KK +
Sbjct: 227 FLATCDAKDLAP---APLKQKIE-EIAKQNLYNAQGATIERSV-TDRFTCGKCKEKKVSY 281
Query: 338 HGNDQNSSAKRIK----CLNCYQYWE 359
+ S+ + + C C W+
Sbjct: 282 YQLQTRSADEPLTTFCTCEACGNRWK 307
>UNIPROTKB|E2R336 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010923 "negative regulation of phosphatase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 Ensembl:ENSCAFT00000017200
Uniprot:E2R336
Length = 718
Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 196 IREKLYKALSKVSGEVDEEVQDKLNGCDPIR-VAITAESLMFEKWGHSFGTYEVKYRSIL 254
+R + A+ +V +E+ D + + + +A E+ +F + Y+ KYRS+L
Sbjct: 104 VRNTVVHAMQEVLRSRLQELPDLVLSEEAVEGIAAGIETALFNLTQTTSCRYKTKYRSLL 163
Query: 255 FNLMDPENPDFRRKVLLGHVKPEALIKMSSEEM 287
FNL DP NPD KV+ G V PE L++MSS ++
Sbjct: 164 FNLRDPRNPDLFLKVVRGDVTPEDLVQMSSIQL 196
>POMBASE|SPCC645.13 [details] [associations]
symbol:SPCC645.13 "transcription elongation regulator
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISS;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0019787 "small conjugating protein ligase
activity" evidence=ISM] [GO:0034244 "negative regulation of
transcription elongation from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
PomBase:SPCC645.13 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0019787
GO:GO:0034244 EMBL:AB027885 EMBL:AB027953 PIR:T41530
RefSeq:NP_588122.1 ProteinModelPortal:Q9Y7V2
EnsemblFungi:SPCC645.13.1 GeneID:2538700 KEGG:spo:SPCC645.13
OMA:ELESSEP OrthoDB:EOG4PRX19 NextBio:20799886 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 Uniprot:Q9Y7V2
Length = 721
Score = 133 (51.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 43/173 (24%), Positives = 83/173 (47%)
Query: 141 PRSKKLVGSEFIVTEETNSLDNVDAEAIREEKPASAVVPQKLVSMIKCNDYFRERIREKL 200
P ++K GS T N + ++ +A +K +S+ D + +R+ +
Sbjct: 163 PSTRKRRGSVGTTATHTKRSKNAPKTSPKDASNETAD-QEKELSLHTSIDEIQNPVRKSV 221
Query: 201 YKALSKVSGEVDEEVQ-DKLNGCDPIR---VAITAESLMFEKWG----HSF---GTYEVK 249
KA V ++ E+ + + + G + + +A+ E +MF HS Y K
Sbjct: 222 AKAWVSVFEKIIEKAKLEGVQGLEDLNSTSLALQLEHIMFMVLSYTTDHSLTPNNKYREK 281
Query: 250 YRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKE 302
+R++ FNL+D +NP FR +VL + L+ +SSEEM + + L ++I+++
Sbjct: 282 FRALRFNLVDDKNPAFRARVLKNEISFNDLVNLSSEEMANPDLKNLAEEIRQQ 334
>UNIPROTKB|F1MG39 [details] [associations]
symbol:F1MG39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
OMA:PKDTGSG EMBL:DAAA02006249 EMBL:DAAA02006250 IPI:IPI00693396
Ensembl:ENSBTAT00000055584 Uniprot:F1MG39
Length = 1150
Score = 134 (52.2 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 227 VAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEE 286
+A E+ +F + G Y+ KYRS+LFNL DP NP+ KV+ G + P L++MSS +
Sbjct: 574 IAAGIEAALFNLTQATNGRYKTKYRSLLFNLRDPRNPELFLKVVHGDITPHGLVRMSSVQ 633
Query: 287 MVSDGSRRLNQQIKK 301
+ R Q +K
Sbjct: 634 LAPQELARWRDQEEK 648
>TAIR|locus:2179419 [details] [associations]
symbol:AT5G25520 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 EMBL:CP002688 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
IPI:IPI00526909 RefSeq:NP_974833.1 UniGene:At.43475
ProteinModelPortal:F4JWU1 SMR:F4JWU1 PRIDE:F4JWU1
EnsemblPlants:AT5G25520.2 GeneID:832627 KEGG:ath:AT5G25520
OMA:HEHEESP PhylomeDB:F4JWU1 Uniprot:F4JWU1
Length = 997
Score = 132 (51.5 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 37/105 (35%), Positives = 54/105 (51%)
Query: 204 LSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENP 263
L VS + E Q DP +A E +F+ +G Y+ K RS+LFNL D NP
Sbjct: 342 LEPVSDFGENETQKSFE--DPELLASKIELELFKLFGGVNKKYKEKGRSLLFNLKDKNNP 399
Query: 264 DFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQ--QIKKERASD 306
+ R V+ G + PE L M++EE+ S + L+Q Q K E ++
Sbjct: 400 ELRESVMSGKISPERLCNMTAEELAS---KELSQWRQAKAEEMAE 441
>UNIPROTKB|Q92576 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=NAS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001965 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0007275
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
eggNOG:NOG255142 EMBL:AL050329 EMBL:AL354719 EMBL:AF091622
EMBL:D87685 EMBL:BX648268 EMBL:BC113650 EMBL:BC113652
IPI:IPI00170770 IPI:IPI00847550 RefSeq:NP_055968.1
UniGene:Hs.348921 PDB:2DME PDBsum:2DME ProteinModelPortal:Q92576
SMR:Q92576 IntAct:Q92576 STRING:Q92576 PhosphoSite:Q92576
DMDM:34098662 PaxDb:Q92576 PeptideAtlas:Q92576 PRIDE:Q92576
Ensembl:ENST00000262043 Ensembl:ENST00000393387 GeneID:23469
KEGG:hsa:23469 UCSC:uc003pen.2 CTD:23469 GeneCards:GC06P064403
HGNC:HGNC:8921 HPA:HPA024676 HPA:HPA025763 MIM:607789
neXtProt:NX_Q92576 PharmGKB:PA33261 HOVERGEN:HBG039623
InParanoid:Q92576 OMA:KQNMTTD PhylomeDB:Q92576 ChiTaRS:PHF3
EvolutionaryTrace:Q92576 GenomeRNAi:23469 NextBio:45797
ArrayExpress:Q92576 Bgee:Q92576 CleanEx:HS_PHF3
Genevestigator:Q92576 GermOnline:ENSG00000118482 Uniprot:Q92576
Length = 2039
Score = 136 (52.9 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 35/100 (35%), Positives = 54/100 (54%)
Query: 190 DYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVK 249
D R+ +R L L K + + +V ++ +VA E +F + + Y+ K
Sbjct: 925 DQIRQSVRHSLKDILMKRLTDSNLKVPEE----KAAKVATKIEKELFSFFRDTDAKYKNK 980
Query: 250 YRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVS 289
YRS++FNL DP+N +KVL G V P+ LI+MS EE+ S
Sbjct: 981 YRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELAS 1020
Score = 47 (21.6 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 16/65 (24%), Positives = 32/65 (49%)
Query: 128 EVVKVRRVDQKGAPRSKKLVGSEFIVTEETNSLD-NVDAEAIREEKPASAVV--PQKLVS 184
E++ R+V+Q + + KL + + E+ S D + DA K +++V P +
Sbjct: 311 EMIATRKVEQD-SKETVKLSHEDDHILEDAGSSDISSDAACTNPNKTENSLVGLPSCVDE 369
Query: 185 MIKCN 189
+ +CN
Sbjct: 370 VTECN 374
Score = 40 (19.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 108 EIAKGKRQITSDEFEQALDVEVV 130
E A+ RQ+ S EF ++ ++EVV
Sbjct: 403 EDAESNRQLESTEFNKS-NLEVV 424
>ZFIN|ZDB-GENE-030131-6117 [details] [associations]
symbol:dido1 "death inducer-obliterator 1"
species:7955 "Danio rerio" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 ZFIN:ZDB-GENE-030131-6117 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 EMBL:BX296530 EMBL:BX005175
IPI:IPI00971682 Ensembl:ENSDART00000110882 ArrayExpress:F1QQA3
Bgee:F1QQA3 Uniprot:F1QQA3
Length = 2779
Score = 136 (52.9 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 44/138 (31%), Positives = 70/138 (50%)
Query: 189 NDYFRERIREKLYKALSK-VSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYE 247
N+ R IR L L K VS D + + G R+A+ E MF ++ Y+
Sbjct: 758 NNQMRSNIRRSLTDILYKRVSDSDDLTMSENEVG----RLAVGIEKEMFNLCMNTDNKYK 813
Query: 248 VKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASDR 307
KYRS++FNL DP+N +V+ G + P L+++S EE++S + L+ K E +S++
Sbjct: 814 NKYRSLMFNLKDPKNKGLFYRVVGGEISPFRLVRLSPEELLS---KELSDWRKSE-SSEK 869
Query: 308 YLPWKG-GYLGPIYHSTR 324
L G + G I +R
Sbjct: 870 SLDKSGRSHSGQIKSGSR 887
>MGI|MGI:1344352 [details] [associations]
symbol:Dido1 "death inducer-obliterator 1" species:10090
"Mus musculus" [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 MGI:MGI:1344352 GO:GO:0005737
GO:GO:0006915 GO:GO:0005654 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Reactome:REACT_118161 Reactome:REACT_120463
Reactome:REACT_75800 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 CTD:11083 eggNOG:NOG255142 HOVERGEN:HBG060199
OMA:PNRMCAD EMBL:AJ238332 EMBL:AY425951 EMBL:AY425952 EMBL:AK129117
EMBL:AK032843 EMBL:AK042474 EMBL:AK044919 EMBL:AL732560
EMBL:BC029110 EMBL:BC044755 EMBL:BC096662 EMBL:BC138712
EMBL:BC138713 IPI:IPI00227469 IPI:IPI00453851 IPI:IPI00828403
RefSeq:NP_035935.2 RefSeq:NP_780760.2 RefSeq:NP_808520.2
UniGene:Mm.253836 UniGene:Mm.490825 PDB:1WEM PDBsum:1WEM
ProteinModelPortal:Q8C9B9 SMR:Q8C9B9 STRING:Q8C9B9
PhosphoSite:Q8C9B9 PaxDb:Q8C9B9 PRIDE:Q8C9B9
Ensembl:ENSMUST00000037764 Ensembl:ENSMUST00000087517
Ensembl:ENSMUST00000103055 Ensembl:ENSMUST00000103056
Ensembl:ENSMUST00000103057 Ensembl:ENSMUST00000130986 GeneID:23856
KEGG:mmu:23856 UCSC:uc008ojq.1 UCSC:uc008ojr.1 UCSC:uc008oju.1
GeneTree:ENSGT00530000063844 InParanoid:Q8C9B9
EvolutionaryTrace:Q8C9B9 NextBio:303557 Bgee:Q8C9B9
CleanEx:MM_DIDO1 CleanEx:MM_DIO1 Genevestigator:Q8C9B9
Uniprot:Q8C9B9
Length = 2256
Score = 135 (52.6 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 47/151 (31%), Positives = 72/151 (47%)
Query: 143 SKKLVGSEFIVTEETNSLDNVDAEAIREEKPASAVVPQKL--VSMIKC--NDYFRERIRE 198
SKKL GS +V V + + PA++ P +L VS N R+ IR
Sbjct: 622 SKKLPGSAAVV--------GVTRKPMSANVPAASPAPGRLGPVSPAPSQPNSQIRQNIRR 673
Query: 199 KLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLM 258
L + L K + D+ + + N ++A+ E MF + + Y+ KYRSI+FNL
Sbjct: 674 SLKEILWKRVNDSDDLIMTE-NEVG--KIALHIEKEMFNLFQVTDNRYKSKYRSIMFNLK 730
Query: 259 DPENPDFRRKVLLGHVKPEALIKMSSEEMVS 289
DP+N +VL + L++M EE+VS
Sbjct: 731 DPKNQGLFHRVLREEISLAKLVRMKPEELVS 761
>UNIPROTKB|H0YF46 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 Gene3D:1.10.472.30
SUPFAM:SSF46942 HGNC:HGNC:26338 ChiTaRS:SPOCD1
Ensembl:ENST00000528579 Uniprot:H0YF46
Length = 255
Score = 122 (48.0 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 227 VAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEE 286
+A E+ +++ + G Y+ KYRS+LFNL DP N D KV+ G V P L++MSS +
Sbjct: 56 IAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQ 115
Query: 287 MVSDGSRRLNQQIKK 301
+ R Q +K
Sbjct: 116 LAPQELARWRDQEEK 130
>TAIR|locus:2050311 [details] [associations]
symbol:AT2G25640 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017890 Pfam:PF07500
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 EMBL:CP002685
GO:GO:0008270 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 IPI:IPI00531004
RefSeq:NP_180135.2 UniGene:At.38993 ProteinModelPortal:F4ISL5
SMR:F4ISL5 PRIDE:F4ISL5 EnsemblPlants:AT2G25640.1 GeneID:817105
KEGG:ath:AT2G25640 OMA:IGAMAND Uniprot:F4ISL5
Length = 745
Score = 128 (50.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 31/82 (37%), Positives = 43/82 (52%)
Query: 223 DPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKM 282
DP +A E+ +F+ +G Y+ K RS+LFNL D NP R KV+ G + E L M
Sbjct: 315 DPQVLAFEIETELFKLFGGVNKKYKEKGRSLLFNLKDKSNPKLREKVMYGEIAAERLCSM 374
Query: 283 SSEEMVSDGSRRLNQQIKKERA 304
S+EE+ S Q +E A
Sbjct: 375 SAEELASKELAEWRQAKAEEMA 396
Score = 45 (20.9 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 20/80 (25%), Positives = 35/80 (43%)
Query: 140 APRSKKLVGSEFIVTEETNSLDNVDAEAIREEKPASAVVPQKLVSMIKCNDYFRERIREK 199
+PR++ L S F+ S +A KP + P L + + R ++RE
Sbjct: 108 SPRTQYLPAS-FVSKNSFVSFSKPGKQAAAR-KP-TLQKPMLLKPQSESSGSVRSKMRES 164
Query: 200 LYKALSKVSGEVDEEVQDKL 219
L AL+ V ++D + K+
Sbjct: 165 LAGALAMVQCQMDVPNESKM 184
>UNIPROTKB|F1PLS2 [details] [associations]
symbol:DIDO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:AAEX03014133 Ensembl:ENSCAFT00000020204 Uniprot:F1PLS2
Length = 1518
Score = 128 (50.1 bits), Expect = 0.00015, P = 0.00015
Identities = 40/147 (27%), Positives = 69/147 (46%)
Query: 143 SKKLVGSEFIVTEETNSLDNVDAEAIREEKPASAVVPQKLVSMIKCNDYFRERIREKLYK 202
SKKL S +V ++ ++ PA + ++ + N R+ IR L +
Sbjct: 634 SKKLPSSASLV----GAVRKPATASVSLASPAPGRLGSSNPTLSQPNSQIRQNIRRSLKE 689
Query: 203 ALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPEN 262
L K + D+ + + + ++A+ E MF + + Y+ KYRSI+FNL DP+N
Sbjct: 690 ILWKRVNDSDDLIMTE---SEVGKIALHIEKEMFNLFQVTDNRYKSKYRSIMFNLKDPKN 746
Query: 263 PDFRRKVLLGHVKPEALIKMSSEEMVS 289
+VL + L++M EE+VS
Sbjct: 747 QGLFHRVLREEISLAKLVRMKPEELVS 773
>UNIPROTKB|E2R727 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 GeneTree:ENSGT00530000063844 CTD:23469 OMA:KQNMTTD
EMBL:AAEX03008426 RefSeq:XP_538985.2 Ensembl:ENSCAFT00000003930
GeneID:481864 KEGG:cfa:481864 NextBio:20856589 Uniprot:E2R727
Length = 2043
Score = 137 (53.3 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 44/143 (30%), Positives = 69/143 (48%)
Query: 152 IVTEETNSLDNV-DAEAIREEKPASAV----VPQKLVSMIKCNDYFRERIREKLYKALSK 206
I T E S + + I+++K + VP S D R+ +R L L +
Sbjct: 885 ICTGEKGSKPGAHEKQEIKKKKSEKGIPNVHVPTTSTSKPSA-DQIRQSVRHSLKDILMR 943
Query: 207 VSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFR 266
E + +V ++ +VA E +F + + Y+ KYRS++FNL DP+N
Sbjct: 944 RLTESNLKVPEE----KAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILF 999
Query: 267 RKVLLGHVKPEALIKMSSEEMVS 289
+KVL G V P+ LI+MS EE+ S
Sbjct: 1000 KKVLKGEVTPDHLIRMSPEELAS 1022
Score = 44 (20.5 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 20/83 (24%), Positives = 39/83 (46%)
Query: 90 DEENGSFAICGEIKSANVEIAK-GKRQITSDEFEQALDVEVVK-VR---RVDQKGAPRSK 144
+++N + C ++K+ + K ++ +D +DV VV+ VR +V+Q+ K
Sbjct: 266 EKKNEALMEC-KVKTVTSPLFKFSDKEEQNDSISDKIDVTVVEEVREKGKVEQESNETIK 324
Query: 145 KLVGSEFIVTEETNSLDNVDAEA 167
+ I+ E +S DA A
Sbjct: 325 LSHEDDQIIEEPASSASLSDAVA 347
Score = 38 (18.4 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 275 KPEALIKMSSEEMVSDGSRRLNQQIKKERASDRY 308
KP+ K SE+ D R ++ + E+ DRY
Sbjct: 1999 KPD---KPKSEDHEKDKEREKSKHREGEKDRDRY 2029
>ZFIN|ZDB-GENE-090313-207 [details] [associations]
symbol:phf3 "PHD finger protein 3" species:7955
"Danio rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
ZFIN:ZDB-GENE-090313-207 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 GeneTree:ENSGT00530000063844 EMBL:BX005106
IPI:IPI00486005 UniGene:Dr.75445 Ensembl:ENSDART00000043440
Ensembl:ENSDART00000100352 HOGENOM:HOG000213981 OMA:CENNDET
NextBio:20880263 Uniprot:B8A483
Length = 1691
Score = 128 (50.1 bits), Expect = 0.00017, P = 0.00017
Identities = 34/99 (34%), Positives = 52/99 (52%)
Query: 191 YFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKY 250
+ R +R+ L + L K S E D K++ P VA E +F + Y+ KY
Sbjct: 754 HIRRSVRDSLEEILLKRSKESDL----KISSDRPAEVARRTEKELFALFQGVDSKYKNKY 809
Query: 251 RSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVS 289
RS+ FNL D +N ++VL G V P L++M++EE+ S
Sbjct: 810 RSLTFNLKDAKNNVLFKRVLKGEVSPADLVRMTAEELAS 848
>UNIPROTKB|E9PPM7 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 HGNC:HGNC:26338
ChiTaRS:SPOCD1 IPI:IPI00977290 ProteinModelPortal:E9PPM7 SMR:E9PPM7
Ensembl:ENST00000452755 ArrayExpress:E9PPM7 Bgee:E9PPM7
Uniprot:E9PPM7
Length = 639
Score = 122 (48.0 bits), Expect = 0.00023, P = 0.00023
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 227 VAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEE 286
+A E+ +++ + G Y+ KYRS+LFNL DP N D KV+ G V P L++MSS +
Sbjct: 77 IAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQ 136
Query: 287 MVSDGSRRLNQQIKK 301
+ R Q +K
Sbjct: 137 LAPQELARWRDQEEK 151
>UNIPROTKB|E1BRR3 [details] [associations]
symbol:TCEANC "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA]
InterPro:IPR003618 InterPro:IPR016492 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 GeneTree:ENSGT00390000017794
CTD:170082 OMA:LKKKAKC EMBL:AADN02011353 IPI:IPI00596200
RefSeq:XP_416834.1 UniGene:Gga.12219 ProteinModelPortal:E1BRR3
Ensembl:ENSGALT00000026765 GeneID:418636 KEGG:gga:418636
NextBio:20821792 Uniprot:E1BRR3
Length = 359
Score = 118 (46.6 bits), Expect = 0.00027, P = 0.00027
Identities = 60/280 (21%), Positives = 121/280 (43%)
Query: 35 LDQLHKSSITCQLLVSTQLVRHLLPLTKH-PRQKIQDTASELILSWRSLFLE-QMKGDEE 92
L +L S+T + L T++ + + + K P +++ A +L+ W++L+ +++ +
Sbjct: 30 LKELEDVSMTVEYLQGTEVAKVVYRILKSCPSAELKKKAKQLLSRWKALYKNNRLQSVQV 89
Query: 93 NGSFAICGEIKSANVEIAKGKRQITSDEFEQ-ALDVEVVKVRRVDQKGAPRSKKLVGSEF 151
S ++C + ++EI G++ ++ +Q LD K+ PR+ K V S
Sbjct: 90 KKSVSVCVSEATEHLEIP-GEQLLSEGPCQQEVLDAVPSKILV-----PPRTVKKVASN- 142
Query: 152 IVTEETNSLDNVDA-EAIREEKPASAVVPQKLVSMIKCNDYFRERIREKLYKALSKVSGE 210
S D + E + S + + S R + + LYKAL+
Sbjct: 143 ---NADGSRDQLSPFEEGHTDNEGSKPLVNEAGSQQDHMRALRCKCTDLLYKALT--GSA 197
Query: 211 VDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVL 270
D+E DK + ++ E +F + Y+ RS + NL +P++ + + +
Sbjct: 198 KDKEETDKW-----LELSKEIEEHVFALHCKNDKKYKNCIRSKISNLKNPKSCNLKHNLF 252
Query: 271 LGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYLP 310
G + P+A +M+ EM SD ++L + + LP
Sbjct: 253 SGTLSPKAFAEMTVMEMASDELKQLRALYTESSIQEHQLP 292
>UNIPROTKB|Q6ZMY3 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0010923 "negative regulation of
phosphatase activity" evidence=IDA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 GO:GO:0010923
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
PROSITE:PS50917 EMBL:AK058077 EMBL:AK091016 EMBL:AK096192
EMBL:AK097227 EMBL:AK131447 EMBL:BC039870 EMBL:BC114430
IPI:IPI00478771 IPI:IPI00827924 IPI:IPI00845378 IPI:IPI00845481
IPI:IPI00845517 RefSeq:NP_653170.3 UniGene:Hs.62604
ProteinModelPortal:Q6ZMY3 SMR:Q6ZMY3 IntAct:Q6ZMY3 DMDM:74749560
PaxDb:Q6ZMY3 PRIDE:Q6ZMY3 Ensembl:ENST00000257100
Ensembl:ENST00000360482 Ensembl:ENST00000533231 GeneID:90853
KEGG:hsa:90853 UCSC:uc001bts.1 UCSC:uc001btu.3 UCSC:uc001btv.3
UCSC:uc001btw.1 CTD:90853 GeneCards:GC01M032256 H-InvDB:HIX0018138
HGNC:HGNC:26338 HPA:HPA031713 neXtProt:NX_Q6ZMY3
PharmGKB:PA134930231 eggNOG:NOG280980 InParanoid:Q6ZMY3 OMA:PKDTGSG
PhylomeDB:Q6ZMY3 ChiTaRS:SPOCD1 GenomeRNAi:90853 NextBio:77002
ArrayExpress:Q6ZMY3 Bgee:Q6ZMY3 CleanEx:HS_SPOCD1
Genevestigator:Q6ZMY3 Uniprot:Q6ZMY3
Length = 1216
Score = 124 (48.7 bits), Expect = 0.00031, P = 0.00031
Identities = 42/140 (30%), Positives = 70/140 (50%)
Query: 164 DAEAIREEKPASAVVPQKLVSM-IKCNDYFRERIREKLYKALSKVSGEV-DEEVQDKLNG 221
+ +++ E+ SA + Q+ S+ I ++E L+ L ++ V EEV + G
Sbjct: 583 EEDSLPEQPEDSAQLQQEKPSLYIGVRGTVVRSMQEVLWTRLRELPDPVLSEEV---VEG 639
Query: 222 CDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIK 281
+A E+ +++ + G Y+ KYRS+LFNL DP N D KV+ G V P L++
Sbjct: 640 -----IAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGDVTPYDLVR 694
Query: 282 MSSEEMVSDGSRRLNQQIKK 301
MSS ++ R Q +K
Sbjct: 695 MSSMQLAPQELARWRDQEEK 714
>UNIPROTKB|F1NFF0 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 EMBL:AADN02019222 EMBL:AADN02019223
IPI:IPI00821338 Ensembl:ENSGALT00000039659 ArrayExpress:F1NFF0
Uniprot:F1NFF0
Length = 2253
Score = 135 (52.6 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 34/101 (33%), Positives = 53/101 (52%)
Query: 189 NDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEV 248
N R+ IR L + L K + D+ V + + +VA+ E MF + + Y+
Sbjct: 688 NSQIRQNIRRSLKEILWKRVNDSDDLVMTE---SEVGKVALNIEKEMFNLFHVTDNRYKS 744
Query: 249 KYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVS 289
KYRSI+FNL DP+N +VL G + L++M EE++S
Sbjct: 745 KYRSIMFNLKDPKNQGLFHRVLHGEISLSKLVRMKPEELLS 785
Score = 39 (18.8 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 41 SSITCQLLVSTQLVRHLLPLTKHP 64
SS+T LL LPLTK P
Sbjct: 587 SSLTKNLLPKKAPTFSSLPLTKQP 610
>UNIPROTKB|F1NGH5 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:AADN02019222 EMBL:AADN02019223 IPI:IPI00577866
Ensembl:ENSGALT00000009066 ArrayExpress:F1NGH5 Uniprot:F1NGH5
Length = 2287
Score = 135 (52.6 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 34/101 (33%), Positives = 53/101 (52%)
Query: 189 NDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEV 248
N R+ IR L + L K + D+ V + + +VA+ E MF + + Y+
Sbjct: 688 NSQIRQNIRRSLKEILWKRVNDSDDLVMTE---SEVGKVALNIEKEMFNLFHVTDNRYKS 744
Query: 249 KYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVS 289
KYRSI+FNL DP+N +VL G + L++M EE++S
Sbjct: 745 KYRSIMFNLKDPKNQGLFHRVLHGEISLSKLVRMKPEELLS 785
Score = 39 (18.8 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 41 SSITCQLLVSTQLVRHLLPLTKHP 64
SS+T LL LPLTK P
Sbjct: 587 SSLTKNLLPKKAPTFSSLPLTKQP 610
>UNIPROTKB|Q9BTC0 [details] [associations]
symbol:DIDO1 "Death-inducer obliterator 1" species:9606
"Homo sapiens" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR001965 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0005634
GO:GO:0005737 EMBL:CH471077 GO:GO:0006915 Reactome:REACT_115566
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Reactome:REACT_111183
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL035669 EMBL:AY481571 EMBL:AY481572 EMBL:AB002331
EMBL:AK002127 EMBL:AL117379 EMBL:BC000770 EMBL:BC004237
EMBL:BC012757 EMBL:BC014489 EMBL:BC137177 EMBL:AL133063
IPI:IPI00183350 IPI:IPI00249982 IPI:IPI00249984 IPI:IPI00619921
RefSeq:NP_001180298.1 RefSeq:NP_001180299.1 RefSeq:NP_071388.2
RefSeq:NP_149072.2 RefSeq:NP_542986.1 RefSeq:NP_542987.2
UniGene:Hs.517172 ProteinModelPortal:Q9BTC0 SMR:Q9BTC0
IntAct:Q9BTC0 STRING:Q9BTC0 PhosphoSite:Q9BTC0 DMDM:116241332
PaxDb:Q9BTC0 PeptideAtlas:Q9BTC0 PRIDE:Q9BTC0 DNASU:11083
Ensembl:ENST00000266070 Ensembl:ENST00000266071
Ensembl:ENST00000354665 Ensembl:ENST00000370366
Ensembl:ENST00000370368 Ensembl:ENST00000370371
Ensembl:ENST00000395335 Ensembl:ENST00000395340
Ensembl:ENST00000395343 GeneID:11083 KEGG:hsa:11083 UCSC:uc002ydr.2
UCSC:uc002ydt.2 UCSC:uc002ydv.2 UCSC:uc011aao.1 CTD:11083
GeneCards:GC20M061510 HGNC:HGNC:2680 HPA:CAB004374 MIM:604140
neXtProt:NX_Q9BTC0 PharmGKB:PA27147 eggNOG:NOG255142
HOVERGEN:HBG060199 InParanoid:Q9BTC0 OMA:PNRMCAD OrthoDB:EOG41ZFCM
ChiTaRS:DIDO1 GenomeRNAi:11083 NextBio:42138 Bgee:Q9BTC0
Genevestigator:Q9BTC0 GermOnline:ENSG00000101191 Uniprot:Q9BTC0
Length = 2240
Score = 125 (49.1 bits), Expect = 0.00048, P = 0.00048
Identities = 31/118 (26%), Positives = 61/118 (51%)
Query: 173 PASAVVPQKLVSMIKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPI-RVAITA 231
P ++ P +L +M +IR+ + ++L ++ + + D + + + ++A+
Sbjct: 647 PMASPAPGRLGAMSAAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTENEVGKIALHI 706
Query: 232 ESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVS 289
E MF + + Y+ KYRSI+FNL DP+N +VL + L+++ EE+VS
Sbjct: 707 EKEMFNLFQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVS 764
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 370 356 0.00080 117 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 67
No. of states in DFA: 615 (65 KB)
Total size of DFA: 244 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.23u 0.21s 32.44t Elapsed: 00:00:01
Total cpu time: 32.24u 0.21s 32.45t Elapsed: 00:00:01
Start: Sat May 11 16:08:28 2013 End: Sat May 11 16:08:29 2013