BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017510
(370 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 18/175 (10%)
Query: 190 DYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVK 249
D R + RE L AL V G D R++ E +F G++ Y+ +
Sbjct: 136 DAVRNKCREMLTAALQTDHDHV-------AIGADCERLSAQIEECIFRDVGNTDMKYKNR 188
Query: 250 YRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYL 309
RS + NL D +NPD RR VL G + P+ + M+SEEM SD + + + + KE + +
Sbjct: 189 VRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQM 248
Query: 310 PWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAKR-----IKCLNCYQYWE 359
GG + + CG+C KK + Q S+ + C C W+
Sbjct: 249 ARTGG-----TQTDLFTCGKC-RKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWK 297
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 18/175 (10%)
Query: 190 DYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVK 249
D R + RE L AL V G D +A E +F G++ Y+ +
Sbjct: 137 DAVRTKCREMLTAALQTDHDHV-------AIGADCECLAGQIEECIFRDVGNTDMKYKNR 189
Query: 250 YRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYL 309
RS L NL D +NP RRKVL G + P+ + M+SEEM SD + + + + KE + +
Sbjct: 190 VRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQM 249
Query: 310 PWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAKR-----IKCLNCYQYWE 359
GG + + CG+C KK + Q S+ + C C W+
Sbjct: 250 ARTGG-----TQTDLFTCGKC-RKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWK 298
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
GN=Tcea3 PE=1 SV=3
Length = 347
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 18/175 (10%)
Query: 190 DYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVK 249
D R++ E L AL + ++ +D CD ++A E ++++ + Y +
Sbjct: 184 DSVRDKCVEMLSAAL-----KAEDNFKDYGVNCD--KLASEIEDHIYQELKSTDMKYRNR 236
Query: 250 YRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYL 309
RS + NL DP NP RR VL G + PE + KM++EEM SD R L + +E + +
Sbjct: 237 VRSRISNLKDPRNPGLRRNVLSGAISPELIAKMTAEEMASDELRELRNAMTQEAIREHQM 296
Query: 310 PWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAKR-----IKCLNCYQYWE 359
GG + C +C KK + Q SA + C C W+
Sbjct: 297 AKTGGTTTDLLR-----CSKC-KKKNCTYNQVQTRSADEPMTTFVLCNECGNRWK 345
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens
GN=TCEA3 PE=2 SV=2
Length = 348
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 24/198 (12%)
Query: 173 PASAVVPQKLVSMI---KC---NDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIR 226
P+S + P SM C D R++ E L AL + D++ +D CD +
Sbjct: 162 PSSPLTPTFASSMCLLAPCYLTGDSVRDKCVEMLSAAL-----KADDDYKDYGVNCD--K 214
Query: 227 VAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEE 286
+A E ++++ + Y + RS + NL DP NP RR VL G + + KM++EE
Sbjct: 215 MASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEE 274
Query: 287 MVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSA 346
M SD R L + +E + + GG ++ C +C KK + Q SA
Sbjct: 275 MASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQ-----CSKC-KKKNCTYNQVQTRSA 328
Query: 347 KR-----IKCLNCYQYWE 359
+ C C W+
Sbjct: 329 DEPMTTFVLCNECGNRWK 346
>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3
PE=2 SV=1
Length = 349
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 18/175 (10%)
Query: 190 DYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVK 249
D R++ E L AL + D++ +D CD ++A E ++++ + Y +
Sbjct: 186 DSVRDKCVEMLSAAL-----KADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKYRNR 238
Query: 250 YRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYL 309
RS + NL DP NP RR VL G + + KM++EEM SD R L + +E + +
Sbjct: 239 VRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQM 298
Query: 310 PWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAKR-----IKCLNCYQYWE 359
GG ++ C +C KK + Q SA + C C W+
Sbjct: 299 AKTGGTTTDLFQ-----CSKC-KKKNCTYNQVQTRSADEPMTTFVLCNECGNRWK 347
>sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1
PE=2 SV=1
Length = 301
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 11/144 (7%)
Query: 221 GCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALI 280
G D + E ++++ ++ Y+ + RS + NL D +NP+ R+ VL G++ P+
Sbjct: 162 GADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFA 221
Query: 281 KMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGN 340
+M++EEM SD + + + + KE + + GG + + CG+C KK +
Sbjct: 222 RMTAEEMASDELKEMRKNLTKEAIREHQMAKTGG-----TQTDLFTCGKC-KKKNCTYTQ 275
Query: 341 DQNSSAKR-----IKCLNCYQYWE 359
Q SA + C C W+
Sbjct: 276 VQTRSADEPMTTFVVCNECGNRWK 299
>sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster
GN=TfIIS PE=2 SV=1
Length = 313
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 21/176 (11%)
Query: 190 DYFRERIREKLYKALSKVSGEVDEEVQDKLNGC-DPIRVAITAESLMFEKWGHSFGTYEV 248
D R + RE L AL GEV E GC +P +A E ++ ++ ++ Y+
Sbjct: 151 DAVRIKCREMLATALK--IGEVPE-------GCGEPEEMAAELEDAIYSEFNNTDMKYKN 201
Query: 249 KYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASDRY 308
+ RS + NL DP+NP R + G V + L KM+ EEM SD ++L ++ KE +D
Sbjct: 202 RIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQ 261
Query: 309 LPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAKR-----IKCLNCYQYWE 359
L G + C +C K+ + Q SA + C C W+
Sbjct: 262 LATVQGTKTDLLK-----CAKC-KKRNCTYNQLQTRSADEPMTTFVMCNECGNRWK 311
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus
GN=Tcea1 PE=2 SV=1
Length = 301
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 11/144 (7%)
Query: 221 GCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALI 280
G D + E ++++ ++ Y+ + RS + NL D +NP+ R+ VL G++ P+
Sbjct: 162 GADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFA 221
Query: 281 KMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGN 340
+M++EEM SD + + + + KE + + GG + + CG+C KK +
Sbjct: 222 RMTAEEMASDELKEMRKNLTKEAIREHQMAKTGG-----TQTDLFTCGKC-KKKNCTYTQ 275
Query: 341 DQNSSAKR-----IKCLNCYQYWE 359
Q SA + C C W+
Sbjct: 276 VQTRSADEPMTTFVVCNECGNRWK 299
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens
GN=TCEA1 PE=1 SV=2
Length = 301
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 11/144 (7%)
Query: 221 GCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALI 280
G D + E ++++ ++ Y+ + RS + NL D +NP+ R+ VL G++ P+
Sbjct: 162 GADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFA 221
Query: 281 KMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGN 340
+M++EEM SD + + + + KE + + GG + + CG+C KK +
Sbjct: 222 RMTAEEMASDELKEMRKNLTKEAIREHQMAKTGG-----TQTDLFTCGKC-KKKNCTYTQ 275
Query: 341 DQNSSAKR-----IKCLNCYQYWE 359
Q SA + C C W+
Sbjct: 276 VQTRSADEPMTTFVVCNECGNRWK 299
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus
GN=Tcea1 PE=1 SV=2
Length = 301
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 11/144 (7%)
Query: 221 GCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALI 280
G D + E ++++ ++ Y+ + RS + NL D +NP+ R+ VL G++ P+
Sbjct: 162 GADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFA 221
Query: 281 KMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGN 340
+M++EEM SD + + + + KE + + GG + + CG+C KK +
Sbjct: 222 RMTAEEMASDELKEMRKNLTKEAIREHQMAKTGG-----TQTDLFTCGKC-KKKNCTYTQ 275
Query: 341 DQNSSAKR-----IKCLNCYQYWE 359
Q SA + C C W+
Sbjct: 276 VQTRSADEPMTTFVVCNECGNRWK 299
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 9/174 (5%)
Query: 186 IKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGT 245
I C D R + RE L AL V V C+ + I E +F G++
Sbjct: 133 ITC-DAVRNKCREMLTLALQTDHDHVAVGV-----SCEHLSSQI--EECIFLDVGNTDMK 184
Query: 246 YEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERAS 305
Y+ + RS + NL D +NP RR VL G + P+ + M+SEEM SD + + + + KE
Sbjct: 185 YKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIR 244
Query: 306 DRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYWE 359
+ + GG ++ + C + + +D+ + + C C W+
Sbjct: 245 EHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTT-YVVCNECGNRWK 297
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 9/174 (5%)
Query: 186 IKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGT 245
I C D R + RE L AL V V C+ + I E +F G++
Sbjct: 133 ITC-DAVRNKCREMLTLALQTDHDHVAVGV-----NCEHLSSQI--EECIFLDVGNTDMK 184
Query: 246 YEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERAS 305
Y+ + RS + NL D +NP RR VL G + P+ + M+SEEM SD + + + + KE
Sbjct: 185 YKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIR 244
Query: 306 DRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYWE 359
+ + GG ++ + C + + +D+ + + C C W+
Sbjct: 245 EHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTY-VVCNECGNRWK 297
>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II OS=Caenorhabditis
elegans GN=T24H10.1 PE=3 SV=1
Length = 308
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Query: 223 DPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKM 282
DP +A+ E ++ + +Y RS +FNL D +N R VL G V+ E M
Sbjct: 171 DPEELAVQIEEKLYSVHRDTNKSYSAAVRSRIFNLRDKKNLALRENVLTGVVRAEKFATM 230
Query: 283 SSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQ 342
+SEEM S R + + KE + + + G S + CG+CG K T
Sbjct: 231 TSEEMASAEIREMRDKFTKEAILEHQMSVQQG-----TPSDMFKCGKCGKKNCTYTQLQT 285
Query: 343 NSSAKRIK----CLNCYQYWE 359
SS + + CL C W+
Sbjct: 286 RSSDEPMTTFVFCLECGNRWK 306
>sp|Q92576|PHF3_HUMAN PHD finger protein 3 OS=Homo sapiens GN=PHF3 PE=1 SV=3
Length = 2039
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 190 DYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVK 249
D R+ +R L L K + + +V ++ +VA E +F + + Y+ K
Sbjct: 925 DQIRQSVRHSLKDILMKRLTDSNLKVPEEKAA----KVATKIEKELFSFFRDTDAKYKNK 980
Query: 250 YRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVS 289
YRS++FNL DP+N +KVL G V P+ LI+MS EE+ S
Sbjct: 981 YRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELAS 1020
>sp|Q6C0K9|BYE1_YARLI Transcription factor BYE1 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=BYE1 PE=3 SV=1
Length = 822
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 8/128 (6%)
Query: 190 DYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIR----VAITAESLMFEKWG---HS 242
D E++R+ AL + V G P + +A+T E +++ +G
Sbjct: 196 DDITEKVRKSAASALKGIFVSVPTSKYSPGAGVSPEQFCETLALTIEQELYDAYGTVEPE 255
Query: 243 FGT-YEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKK 301
G+ Y K+R++ FNL D +N R +V+ G V P+ L+ MSSEEM++ ++L ++++
Sbjct: 256 IGSNYRDKFRTLSFNLRDSKNETLRIRVMTGQVTPQTLVAMSSEEMMNPELQKLAEEVRA 315
Query: 302 ERASDRYL 309
E D L
Sbjct: 316 EAIRDTVL 323
>sp|Q8C9B9|DIDO1_MOUSE Death-inducer obliterator 1 OS=Mus musculus GN=Dido1 PE=1 SV=4
Length = 2256
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 15/151 (9%)
Query: 143 SKKLVGSEFIVTEETNSLDNVDAEAIREEKPASAVVPQKLVSMIKC----NDYFRERIRE 198
SKKL GS +V V + + PA++ P +L + N R+ IR
Sbjct: 622 SKKLPGSAAVV--------GVTRKPMSANVPAASPAPGRLGPVSPAPSQPNSQIRQNIRR 673
Query: 199 KLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLM 258
L + L K + D+ + + + ++A+ E MF + + Y+ KYRSI+FNL
Sbjct: 674 SLKEILWKRVNDSDDLI---MTENEVGKIALHIEKEMFNLFQVTDNRYKSKYRSIMFNLK 730
Query: 259 DPENPDFRRKVLLGHVKPEALIKMSSEEMVS 289
DP+N +VL + L++M EE+VS
Sbjct: 731 DPKNQGLFHRVLREEISLAKLVRMKPEELVS 761
>sp|Q6ZMY3|SPOC1_HUMAN SPOC domain-containing protein 1 OS=Homo sapiens GN=SPOCD1 PE=2
SV=1
Length = 1216
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 227 VAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEE 286
+A E+ +++ + G Y+ KYRS+LFNL DP N D KV+ G V P L++MSS +
Sbjct: 640 IAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQ 699
Query: 287 MV 288
+
Sbjct: 700 LA 701
>sp|Q9Y7V2|BYE1_SCHPO Transcription factor bye1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=bye1 PE=3 SV=3
Length = 721
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 180 QKLVSMIKCNDYFRERIREKLYKALSKVSGEVDEEVQ----DKLNGCDPIRVAITAESLM 235
+K +S+ D + +R+ + KA V ++ E+ + L + +A+ E +M
Sbjct: 201 EKELSLHTSIDEIQNPVRKSVAKAWVSVFEKIIEKAKLEGVQGLEDLNSTSLALQLEHIM 260
Query: 236 FE----KWGHSF---GTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMV 288
F HS Y K+R++ FNL+D +NP FR +VL + L+ +SSEEM
Sbjct: 261 FMVLSYTTDHSLTPNNKYREKFRALRFNLVDDKNPAFRARVLKNEISFNDLVNLSSEEMA 320
Query: 289 SDGSRRLNQQIKKE 302
+ + L ++I+++
Sbjct: 321 NPDLKNLAEEIRQQ 334
>sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapiens GN=DIDO1 PE=1 SV=5
Length = 2240
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 173 PASAVVPQKLVSMI----KCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVA 228
P ++ P +L +M + N R+ IR L + L K + D+ + + + ++A
Sbjct: 647 PMASPAPGRLGAMSAAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLI---MTENEVGKIA 703
Query: 229 ITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMV 288
+ E MF + + Y+ KYRSI+FNL DP+N +VL + L+++ EE+V
Sbjct: 704 LHIEKEMFNLFQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELV 763
Query: 289 S 289
S
Sbjct: 764 S 764
>sp|P49373|TFS2_SCHPO Transcription elongation factor S-II OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1
Length = 293
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 240 GHSFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQI 299
G + Y + RS+ NL D NP R VL + P+ L M+S E+ S+ R+ + ++
Sbjct: 173 GKTGSEYRNRMRSLYMNLKDKNNPKLRASVLRNEITPQRLSTMTSAELASEDRRKEDAKL 232
Query: 300 KKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQNSSAKRI----KCLNCY 355
++E L G + + CG+C KK + + S+ + + +C C
Sbjct: 233 EQEN-----LFHAQGAKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVCG 287
Query: 356 QYWE 359
W+
Sbjct: 288 NRWK 291
>sp|P07273|TFS2_YEAST Transcription elongation factor S-II OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4
Length = 309
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 32/155 (20%)
Query: 192 FRERIREKLYKALSKVS----------GEVDEEVQDKLNGCDPIRVAITAESLMFEKWGH 241
R+++ + LY L+K S + E +K+N CD A
Sbjct: 148 LRDQVLKALYDVLAKESEHPPQSILHTAKAIESEMNKVNNCDTNEAA------------- 194
Query: 242 SFGTYEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKK 301
Y+ +YR I N++ NPD + K+ G + PE L ++++ L Q+I +
Sbjct: 195 ----YKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDL---APAPLKQKI-E 246
Query: 302 ERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTT 336
E A +G + + R+ CG+C KK +
Sbjct: 247 EIAKQNLYNAQGATIERSV-TDRFTCGKCKEKKVS 280
>sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c
OS=Arabidopsis thaliana GN=MED26C PE=2 SV=1
Length = 353
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 25 ELEEAQCIAALDQLHKSSITCQLLVSTQLVRHLLPLTKHPRQKIQDTASELILSWRSLFL 84
+L E + L L IT Q L T + RH+ + KHP ++ A +L+ W+
Sbjct: 138 DLSEESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVD 197
Query: 85 EQMK----GDEENGSFAICGEIKSANVEIAKGKRQITSD 119
E +K GD E S I E + G RQ D
Sbjct: 198 EWVKFNQPGDLEPPSL-IADEDSPVQKALHNGSRQQVPD 235
>sp|Q8PWS4|METK_METMA S-adenosylmethionine synthase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=mat PE=3 SV=1
Length = 398
Score = 35.0 bits (79), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 115 QITSDEFEQALDVEVVKVRRVDQKGAPRSKKLVGSEFIVTEETNSLDNVDAEA 167
Q+ D +Q DV+ V +R + Q G P + LV S I+ +E S NV +EA
Sbjct: 320 QMARDIVKQVPDVQDVYIRLLSQIGKPIDQPLVASAQIIPKEGTSFANVKSEA 372
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,152,961
Number of Sequences: 539616
Number of extensions: 5119389
Number of successful extensions: 15717
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 15683
Number of HSP's gapped (non-prelim): 53
length of query: 370
length of database: 191,569,459
effective HSP length: 119
effective length of query: 251
effective length of database: 127,355,155
effective search space: 31966143905
effective search space used: 31966143905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)