Query 017510
Match_columns 370
No_of_seqs 279 out of 986
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 15:35:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pqv_S STP-alpha, transcriptio 100.0 3.5E-62 1.2E-66 475.7 24.7 297 2-361 3-309 (309)
2 3po3_S Transcription elongatio 100.0 8.4E-49 2.9E-53 353.5 13.3 161 186-361 11-178 (178)
3 2lw4_A Transcription elongatio 100.0 2.3E-31 7.9E-36 223.0 3.1 107 186-299 6-112 (113)
4 3ndq_A Transcription elongatio 100.0 2.9E-29 9.9E-34 208.7 8.8 100 185-291 9-108 (108)
5 2dme_A PHD finger protein 3; P 99.9 3.8E-29 1.3E-33 211.7 2.5 109 188-300 8-116 (120)
6 1wjt_A Transcription elongatio 99.7 1E-18 3.5E-23 143.9 3.4 80 1-87 10-90 (103)
7 1tfi_A Transcriptional elongat 99.6 5.9E-16 2E-20 111.1 4.3 43 318-361 3-50 (50)
8 1qyp_A RNA polymerase II; tran 99.2 7.2E-12 2.5E-16 92.1 4.2 39 321-360 12-55 (57)
9 3h0g_I DNA-directed RNA polyme 99.1 3.8E-11 1.3E-15 100.2 4.1 37 322-359 70-111 (113)
10 1twf_I B12.6, DNA-directed RNA 99.1 8.4E-11 2.9E-15 99.4 4.2 37 323-360 71-112 (122)
11 3qt1_I DNA-directed RNA polyme 98.9 9.4E-11 3.2E-15 100.5 0.0 37 322-359 90-131 (133)
12 2xpp_A IWS1, ECU08_0440; trans 97.6 2.2E-05 7.6E-10 67.9 2.8 58 27-84 80-139 (145)
13 3nfq_A Transcription factor IW 97.4 5.2E-05 1.8E-09 67.2 2.1 58 27-84 95-154 (170)
14 2b4j_C PC4 and SFRS1 interacti 96.9 0.0006 2E-08 55.1 3.9 79 1-84 4-84 (98)
15 1z9e_A PC4 and SFRS1 interacti 96.8 0.00091 3.1E-08 56.3 3.9 79 1-84 4-84 (127)
16 2akl_A PHNA-like protein PA012 92.5 0.046 1.6E-06 46.0 1.9 33 321-360 24-56 (138)
17 1wii_A Hypothetical UPF0222 pr 89.5 0.32 1.1E-05 38.1 3.9 45 323-370 22-68 (85)
18 1k81_A EIF-2-beta, probable tr 89.2 0.3 1E-05 32.0 3.0 31 326-360 2-33 (36)
19 4esj_A Type-2 restriction enzy 88.7 0.17 5.9E-06 46.7 2.2 34 324-359 34-67 (257)
20 1vq8_Z 50S ribosomal protein L 81.2 1.7 5.9E-05 33.7 4.3 30 323-358 26-55 (83)
21 1pft_A TFIIB, PFTFIIBN; N-term 79.9 1.2 4.2E-05 30.7 2.8 32 323-359 4-35 (50)
22 3h0g_L DNA-directed RNA polyme 79.6 0.94 3.2E-05 33.4 2.2 29 322-357 19-47 (63)
23 2fiy_A Protein FDHE homolog; F 77.7 1.3 4.4E-05 42.5 3.2 37 322-360 180-220 (309)
24 1qxf_A GR2, 30S ribosomal prot 75.9 1.3 4.3E-05 32.9 2.0 31 323-358 6-36 (66)
25 1twf_L ABC10-alpha, DNA-direct 74.9 1.2 4.2E-05 33.4 1.7 31 320-357 24-54 (70)
26 3j20_W 30S ribosomal protein S 70.6 2.1 7.2E-05 31.5 2.0 31 323-358 14-44 (63)
27 2xzm_6 RPS27E; ribosome, trans 69.2 2 6.9E-05 33.1 1.8 31 323-358 31-61 (81)
28 3iz6_X 40S ribosomal protein S 68.0 1.6 5.6E-05 34.0 1.0 30 323-357 35-64 (86)
29 3j21_i 50S ribosomal protein L 67.0 5 0.00017 31.1 3.6 29 323-358 34-63 (83)
30 2e2z_A TIM15; protein import, 66.1 2 6.7E-05 34.5 1.2 35 322-357 11-47 (100)
31 3u5c_b RP61, YS20, 40S ribosom 63.4 3 0.0001 32.2 1.7 31 323-358 33-63 (82)
32 3iz5_m 60S ribosomal protein L 61.4 7 0.00024 30.9 3.5 29 323-358 35-64 (92)
33 2fiy_A Protein FDHE homolog; F 60.8 4.9 0.00017 38.4 3.1 42 321-363 219-268 (309)
34 3jyw_9 60S ribosomal protein L 58.5 5.4 0.00019 30.1 2.3 29 323-358 25-54 (72)
35 3izc_m 60S ribosomal protein R 57.4 8.4 0.00029 30.4 3.4 29 323-358 35-64 (92)
36 2k4x_A 30S ribosomal protein S 57.4 5.6 0.00019 28.3 2.2 31 322-358 16-46 (55)
37 3o9x_A Uncharacterized HTH-typ 56.9 6.4 0.00022 31.9 2.8 36 325-360 3-48 (133)
38 4a17_Y RPL37A, 60S ribosomal p 56.2 7.6 0.00026 31.2 3.0 29 323-358 35-64 (103)
39 3ga8_A HTH-type transcriptiona 56.1 6.9 0.00024 29.3 2.7 37 324-360 2-48 (78)
40 1ffk_W Ribosomal protein L37AE 54.9 16 0.00055 27.5 4.4 29 323-358 26-55 (73)
41 2g2k_A EIF-5, eukaryotic trans 54.6 7.1 0.00024 34.2 2.8 35 324-359 96-130 (170)
42 1nwd_B GAD, glutamate decarbox 54.6 15 0.0005 22.0 3.2 16 72-87 11-26 (28)
43 2e9h_A EIF-5, eukaryotic trans 54.5 7.1 0.00024 33.8 2.7 33 324-359 103-137 (157)
44 2d74_B Translation initiation 51.0 5.1 0.00017 34.4 1.2 34 324-360 104-137 (148)
45 1nee_A EIF-2-beta, probable tr 51.0 6.1 0.00021 33.5 1.7 32 323-357 101-132 (138)
46 2k3r_A Ribonuclease P protein 50.6 8.2 0.00028 31.9 2.4 36 324-361 60-102 (123)
47 3cc2_Z 50S ribosomal protein L 49.9 18 0.00062 29.7 4.3 29 323-358 59-88 (116)
48 3j20_Y 30S ribosomal protein S 49.5 13 0.00045 25.8 3.0 30 323-358 18-47 (50)
49 1gnf_A Transcription factor GA 49.3 2.6 8.9E-05 29.0 -0.7 33 324-360 4-37 (46)
50 1dl6_A Transcription factor II 47.5 8.1 0.00028 27.6 1.7 28 325-357 12-39 (58)
51 3axs_A Probable N(2),N(2)-dime 45.8 5.8 0.0002 39.0 0.9 38 324-366 244-281 (392)
52 1x0t_A Ribonuclease P protein 44.7 13 0.00044 30.5 2.7 35 324-360 65-106 (120)
53 2kwq_A Protein MCM10 homolog; 42.2 6.8 0.00023 30.9 0.6 14 323-337 47-60 (92)
54 2hgo_A CASSIICOLIN; toxin, dis 39.2 8.6 0.00029 22.8 0.6 10 352-361 16-25 (27)
55 3na7_A HP0958; flagellar bioge 38.8 4.3 0.00015 37.5 -1.3 32 323-357 197-231 (256)
56 1kdx_A CBP; complex (transcrip 38.4 45 0.0015 25.5 4.7 67 188-258 10-76 (81)
57 1dxg_A Desulforedoxin; non-hem 38.0 11 0.00036 24.3 1.0 12 348-359 6-17 (36)
58 3j21_g 50S ribosomal protein L 37.6 14 0.00047 26.0 1.5 25 323-357 13-37 (51)
59 3cw2_K Translation initiation 37.0 7.7 0.00026 32.8 0.2 33 322-357 101-133 (139)
60 1vd4_A Transcription initiatio 35.2 6 0.0002 27.5 -0.7 38 323-360 13-51 (62)
61 2jr6_A UPF0434 protein NMA0874 35.1 21 0.00071 26.4 2.3 36 323-364 7-42 (68)
62 4gat_A Nitrogen regulatory pro 35.0 6.3 0.00021 29.2 -0.6 35 322-360 7-42 (66)
63 2jsp_A Transcriptional regulat 34.9 14 0.00048 28.8 1.4 14 347-360 20-33 (87)
64 2js4_A UPF0434 protein BB2007; 34.6 18 0.00062 26.9 1.9 34 323-362 7-40 (70)
65 4ayb_P DNA-directed RNA polyme 33.8 17 0.00058 25.1 1.5 30 324-357 3-32 (48)
66 4gl2_A Interferon-induced heli 33.7 13 0.00045 38.2 1.4 13 348-361 641-653 (699)
67 2hf1_A Tetraacyldisaccharide-1 32.0 20 0.00068 26.5 1.7 34 323-362 7-40 (68)
68 2qkd_A Zinc finger protein ZPR 31.9 28 0.00097 34.4 3.4 38 322-359 218-260 (404)
69 2pk7_A Uncharacterized protein 30.2 20 0.00067 26.6 1.4 34 323-362 7-40 (69)
70 1wjv_A Cell growth regulating 30.1 7.6 0.00026 29.8 -0.9 37 322-359 8-48 (79)
71 2i5o_A DNA polymerase ETA; zin 29.9 17 0.00058 24.0 0.9 13 321-333 6-18 (39)
72 3eqt_A ATP-dependent RNA helic 29.3 22 0.00074 30.3 1.7 41 320-360 9-81 (145)
73 2jny_A Uncharacterized BCR; st 29.2 36 0.0012 25.1 2.7 35 323-363 9-43 (67)
74 2vut_I AREA, nitrogen regulato 29.2 6.6 0.00023 26.6 -1.2 31 326-360 3-34 (43)
75 1x3z_A Peptide: N-glycanase; h 28.1 42 0.0014 32.4 3.7 39 322-360 117-167 (335)
76 3v2d_5 50S ribosomal protein L 26.8 21 0.00073 25.7 1.1 24 322-356 28-51 (60)
77 1bbo_A Human enhancer-binding 26.6 12 0.00041 24.7 -0.3 37 325-361 2-42 (57)
78 2gut_A ARC/mediator, positive 26.5 74 0.0025 24.1 4.1 55 190-258 12-66 (77)
79 4bbr_M Transcription initiatio 26.2 34 0.0011 32.9 2.7 29 324-356 21-50 (345)
80 2zkr_2 60S ribosomal protein L 25.6 24 0.00082 28.0 1.2 27 322-357 14-40 (97)
81 2kvh_A Zinc finger and BTB dom 24.4 25 0.00085 19.0 0.9 12 349-360 4-15 (27)
82 1ltl_A DNA replication initiat 23.7 43 0.0015 30.9 2.9 37 320-360 130-169 (279)
83 3k7a_M Transcription initiatio 23.6 23 0.00077 34.0 0.9 29 324-356 21-50 (345)
84 2adr_A ADR1; transcription reg 23.3 18 0.0006 24.1 0.0 37 325-361 3-43 (60)
85 1vq8_1 50S ribosomal protein L 21.9 36 0.0012 24.4 1.5 26 322-356 15-40 (57)
86 2m0d_A Zinc finger and BTB dom 21.9 29 0.001 18.8 0.9 12 349-360 4-15 (30)
87 2lce_A B-cell lymphoma 6 prote 21.6 20 0.00068 25.2 0.0 43 321-363 14-60 (74)
88 2kvf_A Zinc finger and BTB dom 21.3 32 0.0011 18.6 0.9 12 349-360 4-15 (28)
89 2lvu_A Zinc finger and BTB dom 26.7 20 0.00069 19.2 0.0 12 349-360 3-14 (26)
90 2qfd_A Probable ATP-dependent 21.0 35 0.0012 29.0 1.5 41 320-360 23-95 (145)
91 4a2v_A RIG-I, retinoic acid in 21.0 35 0.0012 28.5 1.4 13 348-360 61-75 (131)
92 2k1p_A Zinc finger RAN-binding 20.9 29 0.00099 21.8 0.7 18 323-340 5-22 (33)
93 1rmk_A MU-O-conotoxin mrvib; b 20.8 18 0.00061 22.5 -0.3 9 354-362 2-10 (31)
94 1x5w_A Zinc finger protein 64, 20.7 20 0.00068 24.8 -0.1 40 323-362 8-51 (70)
95 1rik_A E6APC1 peptide; E6-bind 20.7 34 0.0011 18.5 0.9 12 349-360 3-14 (29)
96 3j21_e 50S ribosomal protein L 20.5 39 0.0013 24.6 1.4 25 323-356 16-40 (62)
97 2kvg_A Zinc finger and BTB dom 20.4 28 0.00097 19.0 0.5 12 349-360 4-15 (27)
98 3a43_A HYPD, hydrogenase nicke 20.1 46 0.0016 27.7 2.0 37 321-357 67-116 (139)
99 3uk3_C Zinc finger protein 217 20.0 14 0.00048 24.3 -1.0 39 324-362 4-46 (57)
No 1
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=100.00 E-value=3.5e-62 Score=475.68 Aligned_cols=297 Identities=19% Similarity=0.268 Sum_probs=222.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHh-hcCCCCHhhhhccCceeecccccCCCCHHHHHHHHHHHHHHH
Q 017510 2 EKEVMELCEAAKRRAETAASAEGELEEAQCIAALDQL-HKSSITCQLLVSTQLVRHLLPLTKHPRQKIQDTASELILSWR 80 (370)
Q Consensus 2 e~e~~el~~~a~k~~~~a~~~~~~~~~~~~l~~L~~L-~~~~it~e~L~~T~IG~~V~~Lrkh~~~~I~~~Ak~Li~~WK 80 (370)
|+||+++++.+.+ . +. ..+.++++|++| +.++||+++|++|+||++||+||||++++|+.+|+.||++||
T Consensus 3 ~~el~~~~~~L~k----~---~~--~~~~~l~~L~~L~~~~~it~~~L~~T~IG~~Vn~lrkh~~~~v~~~Ak~Li~~WK 73 (309)
T 1pqv_S 3 SKEVLVHVKNLEK----N---KS--NDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWK 73 (309)
T ss_pred HHHHHHHHHHHhc----c---CC--CHHHHHHHHHHHHhcCCCCHHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 6789998887766 1 11 357899999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCcccccccccchhhhhcccCCCCchhhhhhhhhhHhHhhhcCCCCCCCcccccCcccccccccccC
Q 017510 81 SLFLEQMKGDEENGSFAICGEIKSANVEIAKGKRQITSDEFEQALDVEVVKVRRVDQKGAPRSKKLVGSEFIVTEETNSL 160 (370)
Q Consensus 81 ~~v~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 160 (370)
++|.....++ .+.. ..+. + .+ ....+...+.+ .... .+. +.++... +.+
T Consensus 74 ~~v~~~~~~~--~~~~-~~~~-~-~~-~~~~~~~~~~~-~~~~-~~~-------~~~~~~~------------~~~---- 122 (309)
T 1pqv_S 74 DAINKNKRSR--QAQQ-HHQD-H-AP-GNAEDKTTVGE-SVNG-VQQ-------PASSQSD------------AMK---- 122 (309)
T ss_pred HHHHHhccCC--cccc-cccc-c-cc-ccccCCCCCCC-CcCC-CCC-------Ccccccc------------ccc----
Confidence 9998775433 2110 0000 0 00 00000000000 0000 000 0000000 000
Q ss_pred CcchhhhhhccCCCCcCCCccccc--ccCCChHHHHHHHHHHHHHHhhhcCCCchhhhhhcCCCChHHHHHHHHHHHHHh
Q 017510 161 DNVDAEAIREEKPASAVVPQKLVS--MIKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEK 238 (370)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~p~~~~--~~~t~d~vR~k~r~lL~~aL~~~~~~~~~~~~~~~~~~~~~~~A~~IE~~if~~ 238 (370)
... .+.....+|+.+. ...++|.+|++||+||+++|..+..+.+. ++..+|.+||.+||+.
T Consensus 123 ~~~--------~~~~~~~~~~~~~~~~~~~~d~~R~k~r~~L~~aL~~~~~~~~~---------~~~~~A~~IE~al~~~ 185 (309)
T 1pqv_S 123 QDK--------YVSTKPRNSKNDGVDTAIYHHKLRDQVLKALYDVLAKESEHPPQ---------SILHTAKAIESEMNKV 185 (309)
T ss_pred CCC--------CCCCCCCCCCCCCCCcCcCChHHHHHHHHHHHHHHhcCCCccch---------hHHHHHHHHHHHHHHH
Confidence 000 0000001122222 23688999999999999999875433221 4568999999999999
Q ss_pred hCCCchh--hhHHHHhHHhhcCCCCChHhhhchhcCCCChhhhcCCChhhcCChHHHHHHHHHHHHHhhcccCcccCCCC
Q 017510 239 WGHSFGT--YEVKYRSILFNLMDPENPDFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYL 316 (370)
Q Consensus 239 ~~~~~~~--Yk~k~Rsl~~NLKd~kNp~Lr~~vl~G~isp~~lv~Ms~eEmas~e~k~~r~~~~~e~l~~~~l~~~~~~~ 316 (370)
|++++.+ |+++||+|+|||||++||.||++||.|+|+|++||.|+++||||++++++++++++++|+++++++..
T Consensus 186 ~~~~~~~~~Yk~k~Rsl~~NLKd~~N~~Lr~~vl~g~i~p~~lv~Ms~eElasde~k~~~~~~~~e~l~~~~~~~~~--- 262 (309)
T 1pqv_S 186 NNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQNLYNAQGATIE--- 262 (309)
T ss_pred hCCCchhHHHHHHHHHHHHHcCcCCChHHHHHHHcCCCCHHHHhcCCHHHhCCHHHHHHHHHHHHHHHHHhhhcccc---
Confidence 9877777 99999999999999999999999999999999999999999999999999999999999999887644
Q ss_pred CCccccccccccCCCCcceEEEeeccccCCC-----ceeccCCCCcceeh
Q 017510 317 GPIYHSTRYMCGRCGHKKTTNHGNDQNSSAK-----RIKCLNCYQYWEST 361 (370)
Q Consensus 317 ~~~~~t~~~~C~~C~~~~~~~~q~~Q~RsaD-----f~~C~~Cg~~w~~~ 361 (370)
.+.++.++|++||+++|+|+|+ |+|||| ||+|.+|||+|+||
T Consensus 263 --~~~~~~~~C~~C~~~~~~~~q~-Q~rsaDe~~t~f~~C~~Cg~~w~fc 309 (309)
T 1pqv_S 263 --RSVTDRFTCGKCKEKKVSYYQL-QTRSADEPLTTFCTCEACGNRWKFS 309 (309)
T ss_pred --ccCcccccCCCCCCCeeEEEEe-ecccCCCCCcEEEEeCCCCCceecC
Confidence 3778899999999999999999 999999 99999999999999
No 2
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=100.00 E-value=8.4e-49 Score=353.48 Aligned_cols=161 Identities=23% Similarity=0.367 Sum_probs=145.3
Q ss_pred cCCChHHHHHHHHHHHHHHhhhcCCCchhhhhhcCCCChHHHHHHHHHHHHHhhCC-Cch-hhhHHHHhHHhhcCCCCCh
Q 017510 186 IKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGH-SFG-TYEVKYRSILFNLMDPENP 263 (370)
Q Consensus 186 ~~t~d~vR~k~r~lL~~aL~~~~~~~~~~~~~~~~~~~~~~~A~~IE~~if~~~~~-~~~-~Yk~k~Rsl~~NLKd~kNp 263 (370)
+.++|++|++|++||++||.....+.+.+ +..+|.+||.+||+.|++ ++. .|++++|||+|||||++||
T Consensus 11 ~~~~d~vRdk~~~lL~~aL~~~~~~~~~~---------~~~~A~~IE~~if~~~~~~~~~k~Yk~k~Rsl~~NLKd~~N~ 81 (178)
T 3po3_S 11 AIYHHKLRDQVLKALYDVLAKESEHPPQS---------ILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNP 81 (178)
T ss_dssp ----CHHHHHHHHHHHHHTTSSSSCSTTH---------HHHHHHHHHHHHHHHTSCSSSSTHHHHHHHHHHHHHHSSSCS
T ss_pred CcCCChHHHHHHHHHHHHHhcCCCCchhh---------HHHHHHHHHHHHHHHhcCCCchhhhhhhhhHHHHHcCCCCCH
Confidence 47899999999999999999866554433 358999999999999986 455 8999999999999999999
Q ss_pred HhhhchhcCCCChhhhcCCChhhcCChHHHHHHHHHHHHHhhcccCcccCCCCCCccccccccccCCCCcceEEEeeccc
Q 017510 264 DFRRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIKKERASDRYLPWKGGYLGPIYHSTRYMCGRCGHKKTTNHGNDQN 343 (370)
Q Consensus 264 ~Lr~~vl~G~isp~~lv~Ms~eEmas~e~k~~r~~~~~e~l~~~~l~~~~~~~~~~~~t~~~~C~~C~~~~~~~~q~~Q~ 343 (370)
+||++|++|+|+|++||.|+++||||++++++++++++++|+++++|...+ ++|+.++||+||+++++|+|+ |+
T Consensus 82 ~Lr~~vl~g~isp~~lv~Ms~eElas~elk~~~e~~~~e~l~~~~~~~~~~-----~~t~~~~Cp~C~~~~a~~~q~-Q~ 155 (178)
T 3po3_S 82 DLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQNLYNAQGATIER-----SVTDRFTCGKCKEKKVSYYQL-QT 155 (178)
T ss_dssp HHHHHHHHCCCTTHHHHCCTTTTSSCSHHHHHHHHHHHHHHHHTBCCCCCC-----CCBSSSCCSSSCCSCEECCCC-CC
T ss_pred HHHHHHhcCCCCHHHHHhcCchhhCCHHHHHHHHHHHHHHHHHhhhccccC-----CCcCCcCCCCCCCCceEEEEe-ec
Confidence 999999999999999999999999999999999999999999998876444 778999999999999999999 99
Q ss_pred cCCC-----ceeccCCCCcceeh
Q 017510 344 SSAK-----RIKCLNCYQYWEST 361 (370)
Q Consensus 344 RsaD-----f~~C~~Cg~~w~~~ 361 (370)
|||| ||+|.+|||+|+||
T Consensus 156 rsaDE~mt~f~~C~~C~~~w~f~ 178 (178)
T 3po3_S 156 RSAAAPLTTFCTCEACGNRWKFS 178 (178)
T ss_dssp SCTTSCCCCCEEETTTCCEECCC
T ss_pred ccCCCCCcEEEEcCCCCCeeccC
Confidence 9999 99999999999998
No 3
>2lw4_A Transcription elongation factor A protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.96 E-value=2.3e-31 Score=222.99 Aligned_cols=107 Identities=33% Similarity=0.460 Sum_probs=95.5
Q ss_pred cCCChHHHHHHHHHHHHHHhhhcCCCchhhhhhcCCCChHHHHHHHHHHHHHhhCCCchhhhHHHHhHHhhcCCCCChHh
Q 017510 186 IKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDF 265 (370)
Q Consensus 186 ~~t~d~vR~k~r~lL~~aL~~~~~~~~~~~~~~~~~~~~~~~A~~IE~~if~~~~~~~~~Yk~k~Rsl~~NLKd~kNp~L 265 (370)
+.|+|++|++||++|++||... .+... ...++..+|.+||.+||..|++++.+|++++|||+|||||++||+|
T Consensus 6 p~t~D~vRdk~~e~L~~aL~~~-----~~~~~--~~~~~~~~A~~IE~~~f~~~~~~~~~Yk~k~Rsl~~NLkd~~Np~L 78 (113)
T 2lw4_A 6 PVTCDAVRNKCREMLTAALQTD-----HDHVA--IGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDL 78 (113)
T ss_dssp CCCCSTTHHHHHHHHHHHHHSS-----THHHH--HTCCHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHCSSSSHH
T ss_pred CCCCcHHHHHHHHHHHHHHHcC-----CCccc--ccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCHHH
Confidence 5789999999999999999852 22111 2346789999999999999999999999999999999999999999
Q ss_pred hhchhcCCCChhhhcCCChhhcCChHHHHHHHHH
Q 017510 266 RRKVLLGHVKPEALIKMSSEEMVSDGSRRLNQQI 299 (370)
Q Consensus 266 r~~vl~G~isp~~lv~Ms~eEmas~e~k~~r~~~ 299 (370)
|++||+|+|+|++||.||++||||+|+|++|+++
T Consensus 79 r~~vl~G~i~p~~l~~Ms~eEmAs~elk~~r~~~ 112 (113)
T 2lw4_A 79 RRNVLCGAITPQQIAVMTSEEMASDELKEIRKAM 112 (113)
T ss_dssp HHHHHTTSSCHHHHHHSCHHHHHCTTTTTCSSSC
T ss_pred HHHHHcCCCCHHHHhcCCHHHcCCHHHHHHHHHc
Confidence 9999999999999999999999999999887654
No 4
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=99.96 E-value=2.9e-29 Score=208.73 Aligned_cols=100 Identities=29% Similarity=0.431 Sum_probs=86.3
Q ss_pred ccCCChHHHHHHHHHHHHHHhhhcCCCchhhhhhcCCCChHHHHHHHHHHHHHhhCCCchhhhHHHHhHHhhcCCCCChH
Q 017510 185 MIKCNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPD 264 (370)
Q Consensus 185 ~~~t~d~vR~k~r~lL~~aL~~~~~~~~~~~~~~~~~~~~~~~A~~IE~~if~~~~~~~~~Yk~k~Rsl~~NLKd~kNp~ 264 (370)
.+.|+|++|++||+|||+||+... ++.. ...++..+|.+||.+||+.|+.++.+|++++|||+|||||++||+
T Consensus 9 ~~~t~d~vR~k~~~lL~~aL~~~~-----d~~~--~~~~~~~lA~~IE~~if~~~~~~~~~Yk~k~Rsl~fNLKd~kNp~ 81 (108)
T 3ndq_A 9 APSTSDSVRLKCREMLAAALRTGD-----DYIA--IGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPN 81 (108)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTGGG-----HHHH--HTCCHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHTCTTCHH
T ss_pred CCCCCChHHHHHHHHHHHHHHcCC-----CCCc--ccccHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCHH
Confidence 357999999999999999999742 2221 234678999999999999999888899999999999999999999
Q ss_pred hhhchhcCCCChhhhcCCChhhcCChH
Q 017510 265 FRRKVLLGHVKPEALIKMSSEEMVSDG 291 (370)
Q Consensus 265 Lr~~vl~G~isp~~lv~Ms~eEmas~e 291 (370)
||++|++|+|+|++||.||++||||+|
T Consensus 82 Lr~~vl~G~isp~~lv~Ms~eEmAS~E 108 (108)
T 3ndq_A 82 LRKNVLCGNIPPDLFARMTAEEMASDE 108 (108)
T ss_dssp HHHHHHHTSSCHHHHHHCCTTTC----
T ss_pred HHHHHHcCCcCHHHHhCCCHHHccCCC
Confidence 999999999999999999999999986
No 5
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.95 E-value=3.8e-29 Score=211.70 Aligned_cols=109 Identities=32% Similarity=0.457 Sum_probs=95.3
Q ss_pred CChHHHHHHHHHHHHHHhhhcCCCchhhhhhcCCCChHHHHHHHHHHHHHhhCCCchhhhHHHHhHHhhcCCCCChHhhh
Q 017510 188 CNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLMDPENPDFRR 267 (370)
Q Consensus 188 t~d~vR~k~r~lL~~aL~~~~~~~~~~~~~~~~~~~~~~~A~~IE~~if~~~~~~~~~Yk~k~Rsl~~NLKd~kNp~Lr~ 267 (370)
++|.+|++||++|+++|.....+.+... ..+++..+|.+||.+||..|+.++.+|++++|||+|||||++||+||+
T Consensus 8 ~~d~~Rd~~r~~L~eaL~~~~~~~~~~~----~~~~~~~lA~~IE~~lf~~~~~~~~~Yk~k~Rsl~fNLKd~kNp~Lr~ 83 (120)
T 2dme_A 8 SADQIRQSVRHSLKDILMKRLTDSNLKV----PEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFK 83 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTTCCC----CHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHTHHHHSSSCCSHHH
T ss_pred CCchHHHHHHHHHHHHHHHhcccccccc----chhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4699999999999999998765432110 112456899999999999999888899999999999999999999999
Q ss_pred chhcCCCChhhhcCCChhhcCChHHHHHHHHHH
Q 017510 268 KVLLGHVKPEALIKMSSEEMVSDGSRRLNQQIK 300 (370)
Q Consensus 268 ~vl~G~isp~~lv~Ms~eEmas~e~k~~r~~~~ 300 (370)
+||+|+|+|++||.||++||||+|+|++|+++.
T Consensus 84 ~vl~G~i~p~~lv~Ms~eEmAS~elk~~r~~~~ 116 (120)
T 2dme_A 84 KVLKGEVTPDHLIRMSPEELASKELAAWRRRSG 116 (120)
T ss_dssp HHHHTSSCTTHHHHSCTTTTTTCCSTTTCTTCC
T ss_pred HHHcCCCCHHHHhcCCHHHcCCHHHHHHHHHHh
Confidence 999999999999999999999999999887643
No 6
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=99.73 E-value=1e-18 Score=143.86 Aligned_cols=80 Identities=19% Similarity=0.355 Sum_probs=70.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHhhcCCCCHhhhhccCceeecccccCC-CCHHHHHHHHHHHHHH
Q 017510 1 MEKEVMELCEAAKRRAETAASAEGELEEAQCIAALDQLHKSSITCQLLVSTQLVRHLLPLTKH-PRQKIQDTASELILSW 79 (370)
Q Consensus 1 ~e~e~~el~~~a~k~~~~a~~~~~~~~~~~~l~~L~~L~~~~it~e~L~~T~IG~~V~~Lrkh-~~~~I~~~Ak~Li~~W 79 (370)
||+|++++++...+++... ..+.|+++|++|+.++||+++|++|+||++||+|||| ++++|+.+|+.||++|
T Consensus 10 ~e~ev~~i~k~L~k~~~~~-------~~~~~l~~L~~L~~~~iT~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~W 82 (103)
T 1wjt_A 10 LEEELLRIAKKLEKMVSRK-------KTEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNW 82 (103)
T ss_dssp SHHHHHHHHHHHHHHHHTT-------CCSSHHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHhCCCCCHHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 4789999999777766522 2256999999999999999999999999999999998 8999999999999999
Q ss_pred HHHHHhhc
Q 017510 80 RSLFLEQM 87 (370)
Q Consensus 80 K~~v~~~~ 87 (370)
|++|....
T Consensus 83 K~~v~~~~ 90 (103)
T 1wjt_A 83 KRLLDSPR 90 (103)
T ss_dssp HHHTCCSC
T ss_pred HHHHHHhc
Confidence 99998643
No 7
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=99.59 E-value=5.9e-16 Score=111.14 Aligned_cols=43 Identities=26% Similarity=0.498 Sum_probs=40.6
Q ss_pred CccccccccccCCCCcceEEEeeccccCCC-----ceeccCCCCcceeh
Q 017510 318 PIYHSTRYMCGRCGHKKTTNHGNDQNSSAK-----RIKCLNCYQYWEST 361 (370)
Q Consensus 318 ~~~~t~~~~C~~C~~~~~~~~q~~Q~RsaD-----f~~C~~Cg~~w~~~ 361 (370)
+++.|+.+.||+||++++.|+|+ |+|||| ||+|.+|||+|+||
T Consensus 3 ~~~~t~~~~Cp~Cg~~~a~f~q~-Q~RsaDE~mT~Fy~C~~Cg~~w~~~ 50 (50)
T 1tfi_A 3 GGTQTDLFTCGKCKKKNCTYTQV-QTRSADEPMTTFVVCNECGNRWKFC 50 (50)
T ss_dssp SCEECCCSCCSSSCSSCEEEEEE-CSSSSSSCCEEEEEESSSCCEEECC
T ss_pred CCceeCccCCCCCCCCEEEEEEe-cCcCCCCCceEEEEcCCCCCeEEeC
Confidence 35778899999999999999999 999999 99999999999997
No 8
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=99.21 E-value=7.2e-12 Score=92.12 Aligned_cols=39 Identities=26% Similarity=0.574 Sum_probs=35.8
Q ss_pred ccccccccCCCCcceEEEeeccccCCC-----ceeccCCCCccee
Q 017510 321 HSTRYMCGRCGHKKTTNHGNDQNSSAK-----RIKCLNCYQYWES 360 (370)
Q Consensus 321 ~t~~~~C~~C~~~~~~~~q~~Q~RsaD-----f~~C~~Cg~~w~~ 360 (370)
.+..+.||+||+.+++|+|+ |+|||| ||+|.+|||+|+.
T Consensus 12 ~~~~~~Cp~Cg~~~~~~~q~-Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 12 PTTKITCPKCGNDTAYWWEM-QTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp CEEECCCTTTCCSEEEEEEE-CCSSSSCSSEEEEEESSSCCEEEC
T ss_pred CceEeECCCCCCCEEEEEEe-ecccCCCCCcEEEEcCCCCCEecc
Confidence 33478999999999999999 999999 9999999999984
No 9
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.10 E-value=3.8e-11 Score=100.23 Aligned_cols=37 Identities=16% Similarity=0.377 Sum_probs=34.8
Q ss_pred cccccccCCCCcceEEEeeccccCCC-----ceeccCCCCcce
Q 017510 322 STRYMCGRCGHKKTTNHGNDQNSSAK-----RIKCLNCYQYWE 359 (370)
Q Consensus 322 t~~~~C~~C~~~~~~~~q~~Q~RsaD-----f~~C~~Cg~~w~ 359 (370)
+..++||+||+++++|+|+ |+|||| ||+|.+|||+|+
T Consensus 70 ~~~~~Cp~C~~~~a~~~q~-q~rsade~mt~fy~C~~C~~~w~ 111 (113)
T 3h0g_I 70 RSDKECPRCHQHEAVFYQT-HSRRGDTMMTLIYVCVHCGFAFE 111 (113)
T ss_dssp BCCSCCSSSCCSCEEEECC-CCSSCCCCCCCEEEESSSCCCCC
T ss_pred CcccCCCCCCCceEEEEEE-ecccCCCCCeeEEEcCCCCCEEe
Confidence 3449999999999999999 999999 999999999997
No 10
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=99.05 E-value=8.4e-11 Score=99.42 Aligned_cols=37 Identities=19% Similarity=0.473 Sum_probs=35.2
Q ss_pred ccccccCCCCcceEEEeeccccCCC-----ceeccCCCCccee
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAK-----RIKCLNCYQYWES 360 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaD-----f~~C~~Cg~~w~~ 360 (370)
..+.||+||+++++|+|+ |+|||| ||+|.+|||+|+.
T Consensus 71 t~~~Cp~C~~~~a~~~q~-q~rsade~~t~fy~C~~C~~~w~~ 112 (122)
T 1twf_I 71 SDRECPKCHSRENVFFQS-QQRRKDTSMVLFFVCLSCSHIFTS 112 (122)
T ss_dssp CCCCCTTTCCCCEEEEEC-SSCCTTCCCCEEEEETTTCCEEEC
T ss_pred cCCCCCCCCCCEEEEEEe-cCccCCCCceEEEEeCCCCCEecc
Confidence 368999999999999999 999999 9999999999986
No 11
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=98.93 E-value=9.4e-11 Score=100.48 Aligned_cols=37 Identities=27% Similarity=0.545 Sum_probs=0.0
Q ss_pred cccccccCCCCcceEEEeeccccCCC-----ceeccCCCCcce
Q 017510 322 STRYMCGRCGHKKTTNHGNDQNSSAK-----RIKCLNCYQYWE 359 (370)
Q Consensus 322 t~~~~C~~C~~~~~~~~q~~Q~RsaD-----f~~C~~Cg~~w~ 359 (370)
+..+.||+||+++++|+|+ |+|||| ||+|.+|||+|+
T Consensus 90 ~t~~~CpkCg~~~a~f~q~-Q~RsaDE~mT~fy~C~~C~~~w~ 131 (133)
T 3qt1_I 90 RSDRECPKCHSRENVFFQL-QIRSADEPMTTFYKCVNCGHRWK 131 (133)
T ss_dssp -------------------------------------------
T ss_pred cccCCCCCCCCceEEEEEE-eeecCCCCCcEEEEcCCCCCEeC
Confidence 3468999999999999999 999999 999999999997
No 12
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=97.61 E-value=2.2e-05 Score=67.94 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHhhcCCCCHhhhhccCceeecccccCCCC--HHHHHHHHHHHHHHHHHHH
Q 017510 27 EEAQCIAALDQLHKSSITCQLLVSTQLVRHLLPLTKHPR--QKIQDTASELILSWRSLFL 84 (370)
Q Consensus 27 ~~~~~l~~L~~L~~~~it~e~L~~T~IG~~V~~Lrkh~~--~~I~~~Ak~Li~~WK~~v~ 84 (370)
...---.+|+.|..+||+.+.|++++||++|..|.+|+. ++++.+|..||.+|..-+.
T Consensus 80 ~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~WsRpi~ 139 (145)
T 2xpp_A 80 NIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEVF 139 (145)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHHHHHHHh
Confidence 444556788889999999999999999999999999965 7899999999999999875
No 13
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=97.39 E-value=5.2e-05 Score=67.19 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=50.1
Q ss_pred cHHHHHHHHHHhhcCCCCHhhhhccCceeecccccCCCC--HHHHHHHHHHHHHHHHHHH
Q 017510 27 EEAQCIAALDQLHKSSITCQLLVSTQLVRHLLPLTKHPR--QKIQDTASELILSWRSLFL 84 (370)
Q Consensus 27 ~~~~~l~~L~~L~~~~it~e~L~~T~IG~~V~~Lrkh~~--~~I~~~Ak~Li~~WK~~v~ 84 (370)
...-=-.+|+.|..+||+.+.|+.++||++|..|.+|+. ++++.+|..||.+|-.-+.
T Consensus 95 ~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvV~~l~k~~~et~~nkrla~~Li~~WsRpI~ 154 (170)
T 3nfq_A 95 SFEIQKSLFAALNDLPVKTEHLKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTRPII 154 (170)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTCCCC
T ss_pred cHHHHHHHHHHHHHCCCCHHHHhhCCCCceeeehhcCCcccHHHHHHHHHHHHHHHHHHh
Confidence 444455788888899999999999999999999999965 8899999999999977553
No 14
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=96.94 E-value=0.0006 Score=55.06 Aligned_cols=79 Identities=22% Similarity=0.365 Sum_probs=64.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHhhcCCCCHhh-hhccCceeecccccCC-CCHHHHHHHHHHHHH
Q 017510 1 MEKEVMELCEAAKRRAETAASAEGELEEAQCIAALDQLHKSSITCQL-LVSTQLVRHLLPLTKH-PRQKIQDTASELILS 78 (370)
Q Consensus 1 ~e~e~~el~~~a~k~~~~a~~~~~~~~~~~~l~~L~~L~~~~it~e~-L~~T~IG~~V~~Lrkh-~~~~I~~~Ak~Li~~ 78 (370)
||+.|++|.-.-+-++... .+ +..+|+++|.+|.++++|.-+ ++.+.+--++.+||+. .+..|.+.|..|+.+
T Consensus 4 ~E~~l~~L~~~ik~~L~~~----~~-Dv~kcl~~L~~l~~l~~T~~mL~rnpe~V~t~kklRry~g~q~Ir~kA~~iY~k 78 (98)
T 2b4j_C 4 MDSRLQRIHAEIKNSLKID----NL-DVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNK 78 (98)
T ss_dssp HHHHHHHHHHHHHHHTCTT----SC-CHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccC----CC-CHHHHHHHHHHHhcccccHHHHhhChHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 5888999888666665543 23 789999999999999999875 4566788899999886 678999999999999
Q ss_pred HHHHHH
Q 017510 79 WRSLFL 84 (370)
Q Consensus 79 WK~~v~ 84 (370)
.|.++.
T Consensus 79 fK~~f~ 84 (98)
T 2b4j_C 79 FKNMFL 84 (98)
T ss_dssp HHHC--
T ss_pred HHHHHh
Confidence 999985
No 15
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=96.78 E-value=0.00091 Score=56.28 Aligned_cols=79 Identities=22% Similarity=0.367 Sum_probs=66.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHhhcCCCCHhhh-hccCceeecccccCC-CCHHHHHHHHHHHHH
Q 017510 1 MEKEVMELCEAAKRRAETAASAEGELEEAQCIAALDQLHKSSITCQLL-VSTQLVRHLLPLTKH-PRQKIQDTASELILS 78 (370)
Q Consensus 1 ~e~e~~el~~~a~k~~~~a~~~~~~~~~~~~l~~L~~L~~~~it~e~L-~~T~IG~~V~~Lrkh-~~~~I~~~Ak~Li~~ 78 (370)
||+.|++|.-.-+-++... .+ +..+|+++|..|.++++|.-+| +.+.|.-++.+||+. .+..|...|..|+.+
T Consensus 4 ~E~~L~~L~~~Ik~~L~v~----~~-Dv~kCl~~Leel~~l~vT~~mL~Rnpe~V~TlkklRrY~gnq~Ir~kA~~iY~k 78 (127)
T 1z9e_A 4 MDSRLQRIHAEIKNSLKID----NL-DVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNK 78 (127)
T ss_dssp HHHHHHHHHHHHHHHTCGG----GC-CHHHHHHHHHHHHHSCCCHHHHGGGHHHHHHHHHHTTCTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccC----CC-CHHHHHHHHHHHccccccHHHHhhChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5888999888666666554 23 7899999999999999998855 567788999999986 678899999999999
Q ss_pred HHHHHH
Q 017510 79 WRSLFL 84 (370)
Q Consensus 79 WK~~v~ 84 (370)
.|.++.
T Consensus 79 FK~lf~ 84 (127)
T 1z9e_A 79 FKNMFL 84 (127)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999996
No 16
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=92.51 E-value=0.046 Score=45.99 Aligned_cols=33 Identities=27% Similarity=0.576 Sum_probs=26.2
Q ss_pred ccccccccCCCCcceEEEeeccccCCCceeccCCCCccee
Q 017510 321 HSTRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYWES 360 (370)
Q Consensus 321 ~t~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~w~~ 360 (370)
.++.-.||+|+..-++-.+. .+.|.+|+|.|.-
T Consensus 24 M~~lP~CP~C~seytYeDg~-------l~vCPeC~hEW~~ 56 (138)
T 2akl_A 24 VSTLPPCPQCNSEYTYEDGA-------LLVCPECAHEWSP 56 (138)
T ss_dssp CCCSCCCTTTCCCCCEECSS-------SEEETTTTEEECT
T ss_pred cccCCCCCCCCCcceEecCC-------eEECCccccccCC
Confidence 34567899999887775554 8899999999963
No 17
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=89.52 E-value=0.32 Score=38.07 Aligned_cols=45 Identities=24% Similarity=0.546 Sum_probs=32.0
Q ss_pred ccccccCCCCcceEEEeeccccCCC--ceeccCCCCcceehhhcccCCCC
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAK--RIKCLNCYQYWESTTALYGLLPV 370 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaD--f~~C~~Cg~~w~~~~~~~~~~~~ 370 (370)
..|.||-|++.++.--.+ .|... .+.|..||.++.+ .--|.+-||
T Consensus 22 t~F~CPfCnh~~sV~vki--dk~~~~g~l~C~~Cg~~~~~-~i~~L~epi 68 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKM--DRARNTGVISCTVCLEEFQT-PITYLSEPV 68 (85)
T ss_dssp SCCCCTTTCCSSCEEEEE--ETTTTEEEEEESSSCCEEEE-ECCSSCCTT
T ss_pred CeEcCCCCCCCCeEEEEE--EccCCEEEEEcccCCCeEEe-ccCccCcch
Confidence 479999999997665555 23333 9999999998876 444444453
No 18
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=89.20 E-value=0.3 Score=31.98 Aligned_cols=31 Identities=23% Similarity=0.517 Sum_probs=24.8
Q ss_pred cccCCCCcceEEEeeccccCCC-ceeccCCCCccee
Q 017510 326 MCGRCGHKKTTNHGNDQNSSAK-RIKCLNCYQYWES 360 (370)
Q Consensus 326 ~C~~C~~~~~~~~q~~Q~RsaD-f~~C~~Cg~~w~~ 360 (370)
.|+.|++.++.+.-. ... |..|..||+++..
T Consensus 2 lC~~C~~peT~l~~~----~~~~~l~C~aCG~~~~v 33 (36)
T 1k81_A 2 ICRECGKPDTKIIKE----GRVHLLKCMACGAIRPI 33 (36)
T ss_dssp CCSSSCSCEEEEEEE----TTEEEEEEETTTEEEEE
T ss_pred CCcCCCCCCcEEEEe----CCcEEEEhhcCCCcccc
Confidence 699999999987653 122 9999999998865
No 19
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=88.71 E-value=0.17 Score=46.74 Aligned_cols=34 Identities=24% Similarity=0.562 Sum_probs=25.3
Q ss_pred cccccCCCCcceEEEeeccccCCCceeccCCCCcce
Q 017510 324 RYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYWE 359 (370)
Q Consensus 324 ~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~w~ 359 (370)
..-||.||...-.-+.- -.+.|||+ |.+|+..+.
T Consensus 34 n~yCPnCG~~~l~~f~n-N~PVaDF~-C~~C~EeyE 67 (257)
T 4esj_A 34 QSYCPNCGNNPLNHFEN-NRPVADFY-CNHCSEEFE 67 (257)
T ss_dssp HCCCTTTCCSSCEEC-----CCCEEE-CTTTCCEEE
T ss_pred CCcCCCCCChhhhhccC-CCcccccc-cCCcchhhe
Confidence 35699999998887777 78899998 999988764
No 20
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=81.19 E-value=1.7 Score=33.68 Aligned_cols=30 Identities=20% Similarity=0.556 Sum_probs=21.2
Q ss_pred ccccccCCCCcceEEEeeccccCCCceeccCCCCcc
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYW 358 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~w 358 (370)
..+.||.||.....-... + .+.|..||+.|
T Consensus 26 ~~y~Cp~CG~~~v~r~at-G-----iW~C~~Cg~~~ 55 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGT-G-----IWQCSYCDYKF 55 (83)
T ss_dssp SCEECSSSCCEEEEEEET-T-----EEEETTTCCEE
T ss_pred ccCcCCCCCCcceeccCC-C-----eEECCCCCCEe
Confidence 368999999754332222 3 89999999973
No 21
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=79.90 E-value=1.2 Score=30.67 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=22.1
Q ss_pred ccccccCCCCcceEEEeeccccCCCceeccCCCCcce
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYWE 359 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~w~ 359 (370)
..+.||.||.....|.. .+.-++|..||..+.
T Consensus 4 ~~~~CP~C~~~~l~~d~-----~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 4 KQKVCPACESAELIYDP-----ERGEIVCAKCGYVIE 35 (50)
T ss_dssp SCCSCTTTSCCCEEEET-----TTTEEEESSSCCBCC
T ss_pred ccEeCcCCCCcceEEcC-----CCCeEECcccCCccc
Confidence 35789999886555532 122688999998654
No 22
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=79.60 E-value=0.94 Score=33.41 Aligned_cols=29 Identities=28% Similarity=0.749 Sum_probs=22.1
Q ss_pred cccccccCCCCcceEEEeeccccCCCceeccCCCCc
Q 017510 322 STRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQY 357 (370)
Q Consensus 322 t~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~ 357 (370)
.-.+.|++||.... + +..|-+.|.+||+|
T Consensus 19 ~v~Y~C~~Cg~~~~----l---~~~~~iRC~~CG~R 47 (63)
T 3h0g_L 19 TMIYLCADCGARNT----I---QAKEVIRCRECGHR 47 (63)
T ss_dssp CCCCBCSSSCCBCC----C---CSSSCCCCSSSCCC
T ss_pred CeEEECCCCCCeee----c---CCCCceECCCCCcE
Confidence 35699999987653 2 34568999999997
No 23
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=77.73 E-value=1.3 Score=42.50 Aligned_cols=37 Identities=19% Similarity=0.495 Sum_probs=25.5
Q ss_pred cccccccCCCCcceEEEeeccccC-CC---ceeccCCCCccee
Q 017510 322 STRYMCGRCGHKKTTNHGNDQNSS-AK---RIKCLNCYQYWES 360 (370)
Q Consensus 322 t~~~~C~~C~~~~~~~~q~~Q~Rs-aD---f~~C~~Cg~~w~~ 360 (370)
-..-.||-||..-..- .+ ..+. .+ |..|.-||+.|.|
T Consensus 180 ~~~~~CPvCGs~P~~s-~l-~~~g~~~G~R~l~Cs~C~t~W~~ 220 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG-MI-RQGGKETGLRYLSCSLCACEWHY 220 (309)
T ss_dssp TTCSSCTTTCCCEEEE-EE-EC----CCEEEEEETTTCCEEEC
T ss_pred ccCCCCCCCCCcCcee-EE-eecCCCCCcEEEEeCCCCCEEee
Confidence 3456799999986543 23 2222 23 9999999999987
No 24
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=75.88 E-value=1.3 Score=32.95 Aligned_cols=31 Identities=19% Similarity=0.476 Sum_probs=25.6
Q ss_pred ccccccCCCCcceEEEeeccccCCCceeccCCCCcc
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYW 358 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~w 358 (370)
-+.+|+.|++-.+.|... |+ -|.|..||..-
T Consensus 6 m~VKCp~C~niq~VFShA-~t----vV~C~~Cg~~L 36 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDHP-ST----IVKCIICGRTV 36 (66)
T ss_dssp EEEECTTTCCEEEEESSC-SS----CEECSSSCCEE
T ss_pred EEEECCCCCCceEEEecC-ce----EEEcccCCCEE
Confidence 358999999999988766 65 79999999754
No 25
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=74.86 E-value=1.2 Score=33.44 Aligned_cols=31 Identities=23% Similarity=0.656 Sum_probs=21.9
Q ss_pred cccccccccCCCCcceEEEeeccccCCCceeccCCCCc
Q 017510 320 YHSTRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQY 357 (370)
Q Consensus 320 ~~t~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~ 357 (370)
...-.+.|+.||...- + ...|-+.|.+||+|
T Consensus 24 ~~~v~Y~C~~CG~~~e----~---~~~d~irCp~CG~R 54 (70)
T 1twf_L 24 TATLKYICAECSSKLS----L---SRTDAVRCKDCGHR 54 (70)
T ss_dssp -CCCCEECSSSCCEEC----C---CTTSTTCCSSSCCC
T ss_pred CceEEEECCCCCCcce----e---CCCCCccCCCCCce
Confidence 3456799999997631 2 24567789999995
No 26
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=70.56 E-value=2.1 Score=31.50 Aligned_cols=31 Identities=23% Similarity=0.534 Sum_probs=25.2
Q ss_pred ccccccCCCCcceEEEeeccccCCCceeccCCCCcc
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYW 358 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~w 358 (370)
-+.+|+.|++..+.|... |+ -|.|..||..-
T Consensus 14 m~VkCp~C~~~q~VFSha-~t----~V~C~~Cgt~L 44 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHP-AT----KVRCLICGATL 44 (63)
T ss_dssp EEEECSSSCCEEEEESSC-SS----CEECSSSCCEE
T ss_pred EEEECCCCCCeeEEEecC-Ce----EEEccCcCCEE
Confidence 468999999998888765 54 79999999753
No 27
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=69.18 E-value=2 Score=33.12 Aligned_cols=31 Identities=19% Similarity=0.427 Sum_probs=25.3
Q ss_pred ccccccCCCCcceEEEeeccccCCCceeccCCCCcc
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYW 358 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~w 358 (370)
.+.+|+.|+.-.+.|... |+ .|.|..||..-
T Consensus 31 m~VkCp~C~n~q~VFShA-~t----~V~C~~Cg~~L 61 (81)
T 2xzm_6 31 MDVKCAQCQNIQMIFSNA-QS----TIICEKCSAIL 61 (81)
T ss_dssp EEEECSSSCCEEEEETTC-SS----CEECSSSCCEE
T ss_pred EEeECCCCCCeeEEEecC-cc----EEEccCCCCEE
Confidence 457999999998888765 55 89999999753
No 28
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=67.96 E-value=1.6 Score=34.01 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=24.8
Q ss_pred ccccccCCCCcceEEEeeccccCCCceeccCCCCc
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQY 357 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~ 357 (370)
-+.+|+.|++-.+.|... |+ .|.|..||..
T Consensus 35 m~VkCp~C~~~~~VFShA-~t----~V~C~~Cgtv 64 (86)
T 3iz6_X 35 MDVKCQGCFNITTVFSHS-QT----VVVCPGCQTV 64 (86)
T ss_dssp EEEECTTTCCEEEEETTC-SS----CCCCSSSCCC
T ss_pred eEEECCCCCCeeEEEecC-Cc----EEEccCCCCE
Confidence 468999999998888765 54 8999999975
No 29
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=67.00 E-value=5 Score=31.09 Aligned_cols=29 Identities=21% Similarity=0.525 Sum_probs=21.8
Q ss_pred ccccccCCCCcceEEEeeccccCCC-ceeccCCCCcc
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAK-RIKCLNCYQYW 358 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaD-f~~C~~Cg~~w 358 (370)
..+.||.||...+. |.|. ...|..||..|
T Consensus 34 ~ky~CpfCGk~~vk-------R~a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 34 QKHTCPVCGRKAVK-------RISTGIWQCQKCGATF 63 (83)
T ss_dssp SCBCCSSSCSSCEE-------EEETTEEEETTTCCEE
T ss_pred cccCCCCCCCceeE-------ecCcCeEEcCCCCCEE
Confidence 35789999988632 3334 88999999875
No 30
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=66.06 E-value=2 Score=34.52 Aligned_cols=35 Identities=17% Similarity=0.464 Sum_probs=26.0
Q ss_pred cccccccCCCCcceEEEeeccccCCC--ceeccCCCCc
Q 017510 322 STRYMCGRCGHKKTTNHGNDQNSSAK--RIKCLNCYQY 357 (370)
Q Consensus 322 t~~~~C~~C~~~~~~~~q~~Q~RsaD--f~~C~~Cg~~ 357 (370)
.-.|+|..|+.+....+-- |.-.-. |++|..|.++
T Consensus 11 ~l~FTC~~C~tRs~k~iSk-~aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 11 MIAFTCKKCNTRSSHTMSK-QAYEKGTVLISCPHCKVR 47 (100)
T ss_dssp EEEEEETTTTEEEEEEEEH-HHHHTSEEEEECTTTCCE
T ss_pred EEEEEccCCCCcchhhcCH-HHhhCCEEEEEcCCCccc
Confidence 3579999999987765544 433333 9999999998
No 31
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=63.39 E-value=3 Score=32.19 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=25.8
Q ss_pred ccccccCCCCcceEEEeeccccCCCceeccCCCCcc
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYW 358 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~w 358 (370)
-+.+|+.|++..+.|... |+ -|.|..||..-
T Consensus 33 m~VkCp~C~~~q~VFSha-~t----~V~C~~Cg~~L 63 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSHA-QT----AVTCESCSTIL 63 (82)
T ss_dssp EEEECTTSCSCEEEESBC-SS----CCCCSSSCCCC
T ss_pred EEEECCCCCCeeEEEecC-Ce----EEEccccCCEE
Confidence 568999999999998766 65 78999999753
No 32
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=61.39 E-value=7 Score=30.85 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=21.7
Q ss_pred ccccccCCCCcceEEEeeccccCCC-ceeccCCCCcc
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAK-RIKCLNCYQYW 358 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaD-f~~C~~Cg~~w 358 (370)
..+.|+.||...+. |.|- ...|..||..|
T Consensus 35 ~ky~CpfCgk~~vk-------R~a~GIW~C~~Cg~~~ 64 (92)
T 3iz5_m 35 SKYFCEFCGKFAVK-------RKAVGIWGCKDCGKVK 64 (92)
T ss_dssp SCBCCTTTCSSCBE-------EEETTEEECSSSCCEE
T ss_pred ccccCcccCCCeeE-------ecCcceEEcCCCCCEE
Confidence 35789999988633 3334 88999999865
No 33
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=60.83 E-value=4.9 Score=38.43 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=29.5
Q ss_pred ccccccccCCCCc-ceEEEeeccc-----cCCC--ceeccCCCCcceehhh
Q 017510 321 HSTRYMCGRCGHK-KTTNHGNDQN-----SSAK--RIKCLNCYQYWESTTA 363 (370)
Q Consensus 321 ~t~~~~C~~C~~~-~~~~~q~~Q~-----RsaD--f~~C~~Cg~~w~~~~~ 363 (370)
.....+|+.||+. +..|+.+ -. -.+. ..+|..||+.+|.-..
T Consensus 219 ~~~R~~C~~Cg~~~~l~y~~~-e~~~~~~~~~~~r~e~C~~C~~YlK~~~~ 268 (309)
T 2fiy_A 219 HYVRIKCSHCEESKHLAYLSL-EHDGQPAEKAVLRAETCPSCQGYLKQFYL 268 (309)
T ss_dssp ECCTTSCSSSCCCSCCEEECC-CC-CCCSTTCSEEEEEETTTTEEEEEEET
T ss_pred eecCcCCcCCCCCCCeeEEEe-cCccccCCCcceEEEEcccccchHhhhhh
Confidence 4457899999985 5556655 22 1122 8999999999998654
No 34
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=58.50 E-value=5.4 Score=30.09 Aligned_cols=29 Identities=31% Similarity=0.592 Sum_probs=22.1
Q ss_pred ccccccCCCCcceEEEeeccccCCC-ceeccCCCCcc
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAK-RIKCLNCYQYW 358 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaD-f~~C~~Cg~~w 358 (370)
..+.|+.||... + -|.|- ...|..||..|
T Consensus 25 ~ky~C~fCgk~~-----v--kR~a~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 25 ARYDCSFCGKKT-----V--KRGAAGIWTCSCCKKTV 54 (72)
T ss_dssp SCBCCSSCCSSC-----B--SBCSSSCBCCSSSCCCC
T ss_pred cCccCCCCCCce-----e--EecCCCeEECCCCCCEE
Confidence 368899999875 3 25555 99999999875
No 35
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=57.43 E-value=8.4 Score=30.39 Aligned_cols=29 Identities=31% Similarity=0.610 Sum_probs=21.5
Q ss_pred ccccccCCCCcceEEEeeccccCCC-ceeccCCCCcc
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAK-RIKCLNCYQYW 358 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaD-f~~C~~Cg~~w 358 (370)
..+.|+-||...+. |.|- ...|..||..|
T Consensus 35 ~ky~CpfCgk~~vk-------R~a~GIW~C~~C~~~~ 64 (92)
T 3izc_m 35 ARYDCSFCGKKTVK-------RGAAGIWTCSCCKKTV 64 (92)
T ss_dssp SCCCCSSSCSSCCE-------EEETTEEECTTTCCEE
T ss_pred cCCcCCCCCCceee-------ecccceEEcCCCCCEE
Confidence 35789999987632 3334 88999999865
No 36
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=57.39 E-value=5.6 Score=28.29 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=21.8
Q ss_pred cccccccCCCCcceEEEeeccccCCCceeccCCCCcc
Q 017510 322 STRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYW 358 (370)
Q Consensus 322 t~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~w 358 (370)
-.+..||+||..- +.. ...|.+.|..||...
T Consensus 16 ~~~~fCPkCG~~~--~ma----~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 16 RKHRFCPRCGPGV--FLA----EHADRYSCGRCGYTE 46 (55)
T ss_dssp CSSCCCTTTTTTC--CCE----ECSSEEECTTTCCCE
T ss_pred EccccCcCCCCce--eEe----ccCCEEECCCCCCEE
Confidence 3468899999843 111 235788999999874
No 37
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=56.93 E-value=6.4 Score=31.90 Aligned_cols=36 Identities=14% Similarity=0.330 Sum_probs=21.1
Q ss_pred ccccCCCCcceEEEe----e---ccccCCC---ceeccCCCCccee
Q 017510 325 YMCGRCGHKKTTNHG----N---DQNSSAK---RIKCLNCYQYWES 360 (370)
Q Consensus 325 ~~C~~C~~~~~~~~q----~---~Q~RsaD---f~~C~~Cg~~w~~ 360 (370)
..|+-||........ . +++-.-+ ++.|.+||..|..
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d 48 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECC
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeec
Confidence 579999986432111 1 1111111 7889999988754
No 38
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=56.19 E-value=7.6 Score=31.23 Aligned_cols=29 Identities=28% Similarity=0.558 Sum_probs=21.4
Q ss_pred ccccccCCCCcceEEEeeccccCCC-ceeccCCCCcc
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAK-RIKCLNCYQYW 358 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaD-f~~C~~Cg~~w 358 (370)
..+.|+-||...+. |.+- .+.|..||..|
T Consensus 35 aky~CpfCgk~~vK-------R~a~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 35 AKYGCPFCGKVAVK-------RAAVGIWKCKPCKKII 64 (103)
T ss_dssp SCEECTTTCCEEEE-------EEETTEEEETTTTEEE
T ss_pred cCCCCCCCCCceee-------ecCcceEEcCCCCCEE
Confidence 36889999987532 3334 88999999875
No 39
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=56.08 E-value=6.9 Score=29.33 Aligned_cols=37 Identities=14% Similarity=0.386 Sum_probs=21.5
Q ss_pred cccccCCCCcceEE--Ee--e---ccccCCC---ceeccCCCCccee
Q 017510 324 RYMCGRCGHKKTTN--HG--N---DQNSSAK---RIKCLNCYQYWES 360 (370)
Q Consensus 324 ~~~C~~C~~~~~~~--~q--~---~Q~RsaD---f~~C~~Cg~~w~~ 360 (370)
..+|+-||...... .. . +++---+ .+.|..||..|..
T Consensus 2 ~m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~~ 48 (78)
T 3ga8_A 2 HMKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (78)
T ss_dssp -CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECC
T ss_pred ceECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEEC
Confidence 35799998753321 11 1 1211111 8889999998865
No 40
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=54.95 E-value=16 Score=27.53 Aligned_cols=29 Identities=24% Similarity=0.494 Sum_probs=20.9
Q ss_pred ccccccCCCCcceEEEeeccccCCC-ceeccCCCCcc
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAK-RIKCLNCYQYW 358 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaD-f~~C~~Cg~~w 358 (370)
..+.|+.||...+. |-+- ...|..|+..|
T Consensus 26 ~ky~C~fCgk~~vk-------R~a~GIW~C~~C~~~~ 55 (73)
T 1ffk_W 26 KKYKCPVCGFPKLK-------RASTSIWVCGHCGYKI 55 (73)
T ss_pred cCccCCCCCCceeE-------EEEeEEEECCCCCcEE
Confidence 36889999976543 2222 78999999874
No 41
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=54.60 E-value=7.1 Score=34.23 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=25.0
Q ss_pred cccccCCCCcceEEEeeccccCCCceeccCCCCcce
Q 017510 324 RYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYWE 359 (370)
Q Consensus 324 ~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~w~ 359 (370)
-..|+.|+...+.+.-- .....-|..|..||.+--
T Consensus 96 YVlC~~C~sPdT~L~k~-~~~r~~~l~C~ACGa~~~ 130 (170)
T 2g2k_A 96 FVLCPECENPETDLHVN-PKKQTIGNSCKACGYRGM 130 (170)
T ss_dssp HHSCTTTSSSCEEEEEE-TTTTEEEEEETTTCCCCC
T ss_pred eEECCCCCCCccEEEEe-cCCCEEEEEccccCCccc
Confidence 46799999999988752 111111999999998743
No 42
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=54.59 E-value=15 Score=21.95 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhc
Q 017510 72 ASELILSWRSLFLEQM 87 (370)
Q Consensus 72 Ak~Li~~WK~~v~~~~ 87 (370)
--++|..||++|++.+
T Consensus 11 qlemitawkkfveekk 26 (28)
T 1nwd_B 11 QLEMITAWKKFVEEKK 26 (28)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4578999999998753
No 43
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.48 E-value=7.1 Score=33.79 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=24.6
Q ss_pred cccccCCCCcceEEEeeccccCCC--ceeccCCCCcce
Q 017510 324 RYMCGRCGHKKTTNHGNDQNSSAK--RIKCLNCYQYWE 359 (370)
Q Consensus 324 ~~~C~~C~~~~~~~~q~~Q~RsaD--f~~C~~Cg~~w~ 359 (370)
-..|+.|+...+.+.-- +... |..|..||.+--
T Consensus 103 YVlC~~C~sPdT~L~~~---~~~r~~~l~C~ACGa~~~ 137 (157)
T 2e9h_A 103 FVLCPECENPETDLHVN---PKKQTIGNSCKACGYRGM 137 (157)
T ss_dssp TTSCTTTCCSCCEEEEE---TTTTEEEEECSSSCCEEE
T ss_pred eEECCCCCCCccEEEEe---cCCCEEEEEccCCCCCCc
Confidence 46799999999987642 1222 999999998643
No 44
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=50.97 E-value=5.1 Score=34.37 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=24.9
Q ss_pred cccccCCCCcceEEEeeccccCCCceeccCCCCccee
Q 017510 324 RYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYWES 360 (370)
Q Consensus 324 ~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~w~~ 360 (370)
-..|+.|++..+.+.-- ...-|..|..||.++-.
T Consensus 104 yVlC~~C~sPdT~L~k~---~r~~~l~C~ACGa~~~V 137 (148)
T 2d74_B 104 YVICPVCGSPDTKIIKR---DRFHFLKCEACGAETPI 137 (148)
T ss_dssp HSSCSSSCCTTCCCCBS---SSSBCCCCSSSCCCCCC
T ss_pred EEECCCCCCcCcEEEEe---CCEEEEEecCCCCCccc
Confidence 46799999999876532 11129999999988654
No 45
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=50.96 E-value=6.1 Score=33.46 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=23.9
Q ss_pred ccccccCCCCcceEEEeeccccCCCceeccCCCCc
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQY 357 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~ 357 (370)
.-..|+.|++..+.+.-- ...-|..|..||.+
T Consensus 101 ~yVlC~~C~sPdT~l~k~---~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 101 KFVICHECNRPDTRIIRE---GRISLLKCEACGAK 132 (138)
T ss_dssp HHHHHTCCSSCSSCCEEE---TTTTEEECSTTSCC
T ss_pred hEEECCCCCCcCcEEEEc---CCeEEEEccCCCCC
Confidence 347799999999887642 11129999999986
No 46
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=50.57 E-value=8.2 Score=31.88 Aligned_cols=36 Identities=19% Similarity=0.420 Sum_probs=24.2
Q ss_pred cccccCCCC-----cceEEEeeccccCCC--ceeccCCCCcceeh
Q 017510 324 RYMCGRCGH-----KKTTNHGNDQNSSAK--RIKCLNCYQYWEST 361 (370)
Q Consensus 324 ~~~C~~C~~-----~~~~~~q~~Q~RsaD--f~~C~~Cg~~w~~~ 361 (370)
..-|.+|+. ..++... +..+.. .++|+.||+.-+|=
T Consensus 60 R~~Ck~C~s~LIPG~t~~vri--~~~~k~~vv~tCl~Cg~~kR~p 102 (123)
T 2k3r_A 60 RRYCKKCHAFLVPGINARVRL--RQKRMPHIVVKCLECGHIMRYP 102 (123)
T ss_dssp TSBCTTTCCBCCBTTTEEEEE--ECSSSCEEEEEETTTTEEEEEE
T ss_pred HHhccCCCCEeECCCceEEEE--ecCCccEEEEECCCCCCEEEEe
Confidence 457999987 3444443 222334 89999999987774
No 47
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=49.93 E-value=18 Score=29.67 Aligned_cols=29 Identities=17% Similarity=0.495 Sum_probs=20.4
Q ss_pred ccccccCCCCcceEEEeeccccCCC-ceeccCCCCcc
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAK-RIKCLNCYQYW 358 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaD-f~~C~~Cg~~w 358 (370)
..+.||.||...+. |.|. .+.|..||..|
T Consensus 59 akytCPfCGk~~vK-------R~avGIW~C~~Cgk~f 88 (116)
T 3cc2_Z 59 EDHACPNCGEDRVD-------RQGTGIWQCSYCDYKF 88 (116)
T ss_dssp SCEECSSSCCEEEE-------EEETTEEEETTTCCEE
T ss_pred cCCcCCCCCCceeE-------ecCceeEECCCCCCEE
Confidence 36889999974322 2233 88999999874
No 48
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.51 E-value=13 Score=25.78 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=20.2
Q ss_pred ccccccCCCCcceEEEeeccccCCCceeccCCCCcc
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYW 358 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~w 358 (370)
..-.||+||..- ... + +.|-..|..||..+
T Consensus 18 ~~k~CP~CG~~~-fm~---~--~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCPRCGPGV-FMA---D--HGDRWACGKCGYTE 47 (50)
T ss_dssp SSEECSSSCSSC-EEE---E--CSSEEECSSSCCEE
T ss_pred ecccCCCCCCce-EEe---c--CCCeEECCCCCCEE
Confidence 456699999842 222 2 34678899999864
No 49
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=49.35 E-value=2.6 Score=29.04 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=23.8
Q ss_pred cccccCCCCcceEEEeeccccCCC-ceeccCCCCccee
Q 017510 324 RYMCGRCGHKKTTNHGNDQNSSAK-RIKCLNCYQYWES 360 (370)
Q Consensus 324 ~~~C~~C~~~~~~~~q~~Q~RsaD-f~~C~~Cg~~w~~ 360 (370)
...|..|+-..+. + |.|..+ .+.|+.||-+|+-
T Consensus 4 ~~~C~~C~tt~Tp---~-WR~gp~G~~LCNaCGl~~k~ 37 (46)
T 1gnf_A 4 ARECVNCGATATP---L-WRRDRTGHYLCNACGLYHKM 37 (46)
T ss_dssp SCCCTTTCCCCCS---S-CBCCTTCCCBCSHHHHHHHH
T ss_pred CCCCCCcCCCCCC---c-CccCCCCCccchHHHHHHHH
Confidence 4569999877644 3 444444 7889999998864
No 50
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=47.54 E-value=8.1 Score=27.63 Aligned_cols=28 Identities=14% Similarity=0.212 Sum_probs=18.8
Q ss_pred ccccCCCCcceEEEeeccccCCCceeccCCCCc
Q 017510 325 YMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQY 357 (370)
Q Consensus 325 ~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~ 357 (370)
..||.|+.....|. ..+..+.|..||--
T Consensus 12 ~~Cp~C~~~~lv~D-----~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 12 VTCPNHPDAILVED-----YRAGDMICPECGLV 39 (58)
T ss_dssp CSBTTBSSSCCEEC-----SSSCCEECTTTCCE
T ss_pred ccCcCCCCCceeEe-----CCCCeEEeCCCCCE
Confidence 47999998664332 12226889999954
No 51
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=45.79 E-value=5.8 Score=39.04 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=28.0
Q ss_pred cccccCCCCcceEEEeeccccCCCceeccCCCCcceehhhccc
Q 017510 324 RYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYWESTTALYG 366 (370)
Q Consensus 324 ~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~w~~~~~~~~ 366 (370)
.+.|..|+.+...+.. . .. -..|..||.+|...+.+|.
T Consensus 244 v~~C~~C~~~~~~~~~--~--~~-~~~C~~cg~~~~~~GPlW~ 281 (392)
T 3axs_A 244 IQYCFNCMNREVVTDL--Y--KF-KEKCPHCGSKFHIGGPLWI 281 (392)
T ss_dssp EEECTTTCCEEEECCG--G--GC-CSBCTTTCSBCEEEEEEEC
T ss_pred EEECCCCCCeEeecCC--C--CC-CCcCCCCCCccceeccccc
Confidence 5789999988764421 0 01 3569999999999998885
No 52
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=44.68 E-value=13 Score=30.49 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=23.1
Q ss_pred cccccCCCC-----cceEEEeeccccCCC--ceeccCCCCccee
Q 017510 324 RYMCGRCGH-----KKTTNHGNDQNSSAK--RIKCLNCYQYWES 360 (370)
Q Consensus 324 ~~~C~~C~~-----~~~~~~q~~Q~RsaD--f~~C~~Cg~~w~~ 360 (370)
..-|.+|+. ..++.... ..+.- .++|+.||+.-+|
T Consensus 65 R~~Ck~C~s~LiPG~t~~vri~--~~~~~~vv~tCl~Cg~~kR~ 106 (120)
T 1x0t_A 65 RRYCKRCHTFLIPGVNARVRLR--TKRMPHVVITCLECGYIMRY 106 (120)
T ss_dssp TSBCTTTCCBCCBTTTEEEEEE--CSSSCEEEEEETTTCCEEEE
T ss_pred HHhccCCCCEeECCCceEEEEe--cCCccEEEEECCCCCCEEEE
Confidence 457999987 24444332 22222 8999999998776
No 53
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=42.23 E-value=6.8 Score=30.93 Aligned_cols=14 Identities=21% Similarity=0.719 Sum_probs=7.3
Q ss_pred ccccccCCCCcceEE
Q 017510 323 TRYMCGRCGHKKTTN 337 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~ 337 (370)
--|+|+ |+++-++|
T Consensus 47 RFFkC~-C~~Rt~sl 60 (92)
T 2kwq_A 47 RFFKCP-CGNRTISL 60 (92)
T ss_dssp EEEECT-TSCEEEES
T ss_pred EEEECC-CCCceeEe
Confidence 345554 55555555
No 54
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=39.25 E-value=8.6 Score=22.84 Aligned_cols=10 Identities=30% Similarity=0.730 Sum_probs=8.0
Q ss_pred cCCCCcceeh
Q 017510 352 LNCYQYWEST 361 (370)
Q Consensus 352 ~~Cg~~w~~~ 361 (370)
.+||+.|-++
T Consensus 16 dncgnswacs 25 (27)
T 2hgo_A 16 DNCGNSWACS 25 (27)
T ss_dssp CSSSCEEECS
T ss_pred CCcCCccccc
Confidence 3799999875
No 55
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=38.75 E-value=4.3 Score=37.46 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=22.0
Q ss_pred ccccccCCCCc--ceEEEeeccccCCC-ceeccCCCCc
Q 017510 323 TRYMCGRCGHK--KTTNHGNDQNSSAK-RIKCLNCYQY 357 (370)
Q Consensus 323 ~~~~C~~C~~~--~~~~~q~~Q~RsaD-f~~C~~Cg~~ 357 (370)
..-.|+.|+-. -..|.. .|.+| +++|.+||--
T Consensus 197 ~~~~C~GC~~~lppq~~~~---i~~~~~Iv~Cp~CgRI 231 (256)
T 3na7_A 197 KKQACGGCFIRLNDKIYTE---VLTSGDMITCPYCGRI 231 (256)
T ss_dssp BTTBCTTTCCBCCHHHHHH---HHHSSSCEECTTTCCE
T ss_pred eCCccCCCCeeeCHHHHHH---HHCCCCEEECCCCCee
Confidence 34579999764 333433 45577 9999999964
No 56
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=38.38 E-value=45 Score=25.54 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=43.1
Q ss_pred CChHHHHHHHHHHHHHHhhhcCCCchhhhhhcCCCChHHHHHHHHHHHHHhhCCCchhhhHHHHhHHhhcC
Q 017510 188 CNDYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLM 258 (370)
Q Consensus 188 t~d~vR~k~r~lL~~aL~~~~~~~~~~~~~~~~~~~~~~~A~~IE~~if~~~~~~~~~Yk~k~Rsl~~NLK 258 (370)
-+..+|+..+.-|..++.... .+....+ ..-.+....|..||..+|+.. .+..+|-..+.-.++++.
T Consensus 10 vt~~lR~hlv~Klv~aI~P~p--dp~a~~d-~rm~~l~~yArkvE~~~ye~A-~srdeYY~llA~kiykiq 76 (81)
T 1kdx_A 10 VTQDLRSHLVHKLVQAIFPTP--DPAALKD-RRMENLVAYAKKVEGDMYESA-NSRDEYYHLLAEKIYKIQ 76 (81)
T ss_dssp SCHHHHHHHHHHHHHHHSCCS--SGGGGGS-HHHHHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcCCC--Chhhhhh-HHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHH
Confidence 347899999999999997631 0111100 000123478999999999875 345678777776666653
No 57
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=38.04 E-value=11 Score=24.30 Aligned_cols=12 Identities=33% Similarity=0.387 Sum_probs=9.8
Q ss_pred ceeccCCCCcce
Q 017510 348 RIKCLNCYQYWE 359 (370)
Q Consensus 348 f~~C~~Cg~~w~ 359 (370)
||.|..|||--.
T Consensus 6 fY~C~~CGnive 17 (36)
T 1dxg_A 6 VYKCELCGQVVK 17 (36)
T ss_dssp EEECTTTCCEEE
T ss_pred EEEcCCCCcEEE
Confidence 999999998644
No 58
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.56 E-value=14 Score=25.98 Aligned_cols=25 Identities=36% Similarity=0.736 Sum_probs=16.3
Q ss_pred ccccccCCCCcceEEEeeccccCCCceeccCCCCc
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQY 357 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~ 357 (370)
+...|++|+.+ + +.....|..||+.
T Consensus 13 ~k~iCpkC~a~------~----~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGAT------N----PWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCE------E----CTTCSSCSSSSSC
T ss_pred CCccCCCCCCc------C----CCCceecCCCCCc
Confidence 45668888876 2 1125668888876
No 59
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=37.03 E-value=7.7 Score=32.84 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=20.4
Q ss_pred cccccccCCCCcceEEEeeccccCCCceeccCCCCc
Q 017510 322 STRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQY 357 (370)
Q Consensus 322 t~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~ 357 (370)
..-..|+.|++..+.+.-- ...-|..|..||.+
T Consensus 101 ~~yVlC~~C~sPdT~l~k~---~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 101 KAYVECSTCKSLDTILKKE---KKSWYIVCLACGAQ 133 (139)
T ss_dssp SCCSSCCSSSSSCCCSCSS---CSTTTSSCCC----
T ss_pred HHeeECCCCCCcCcEEEEe---CCeEEEEecCCCCC
Confidence 3457899999999775421 11119999999976
No 60
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=35.17 E-value=6 Score=27.48 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=23.2
Q ss_pred ccccccCCCCcceEEEeeccccCCC-ceeccCCCCccee
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAK-RIKCLNCYQYWES 360 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaD-f~~C~~Cg~~w~~ 360 (370)
..|.|+.||..=.....+..+-.++ -|.|..||..+..
T Consensus 13 k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEE 51 (62)
T ss_dssp SEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEE
T ss_pred CCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCcccc
Confidence 4599999987432222221111233 7899999987654
No 61
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=35.10 E-value=21 Score=26.41 Aligned_cols=36 Identities=6% Similarity=0.083 Sum_probs=23.5
Q ss_pred ccccccCCCCcceEEEeeccccCCCceeccCCCCcceehhhc
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYWESTTAL 364 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~w~~~~~~ 364 (370)
+...||.|++. -.|.. .....+|..||..|-.-...
T Consensus 7 ~iL~CP~ck~~-L~~~~-----~~~~LiC~~cg~~YPI~dGI 42 (68)
T 2jr6_A 7 DILVCPVTKGR-LEYHQ-----DKQELWSRQAKLAYPIKDGI 42 (68)
T ss_dssp CCCBCSSSCCB-CEEET-----TTTEEEETTTTEEEEEETTE
T ss_pred hheECCCCCCc-CeEeC-----CCCEEEcCCCCcEecCCCCe
Confidence 56789999974 33322 12378899999877554433
No 62
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=34.96 E-value=6.3 Score=29.19 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=25.3
Q ss_pred cccccccCCCCcceEEEeeccccCCC-ceeccCCCCccee
Q 017510 322 STRYMCGRCGHKKTTNHGNDQNSSAK-RIKCLNCYQYWES 360 (370)
Q Consensus 322 t~~~~C~~C~~~~~~~~q~~Q~RsaD-f~~C~~Cg~~w~~ 360 (370)
.....|..|+-..+. + |.|..+ ...|+.||-+|+.
T Consensus 7 ~~~~~C~~C~t~~Tp---~-WR~gp~G~~LCNaCGl~~~~ 42 (66)
T 4gat_A 7 NGPTTCTNCFTQTTP---L-WRRNPEGQPLCNACGLFLKL 42 (66)
T ss_dssp SSSCCCTTTCCCCCS---S-CEEETTTEEECHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCC---c-CCcCCCCCCccHHHHHHHHH
Confidence 345789999987654 3 444444 6889999998875
No 63
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=34.92 E-value=14 Score=28.79 Aligned_cols=14 Identities=36% Similarity=0.748 Sum_probs=12.3
Q ss_pred CceeccCCCCccee
Q 017510 347 KRIKCLNCYQYWES 360 (370)
Q Consensus 347 Df~~C~~Cg~~w~~ 360 (370)
|+++|+.||..+++
T Consensus 20 d~iiClecGK~fK~ 33 (87)
T 2jsp_A 20 DHIVCLECGGSFKS 33 (87)
T ss_dssp SCEECTBTCCEESB
T ss_pred CceEecccchhhHH
Confidence 39999999998886
No 64
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=34.59 E-value=18 Score=26.91 Aligned_cols=34 Identities=9% Similarity=0.176 Sum_probs=22.7
Q ss_pred ccccccCCCCcceEEEeeccccCCCceeccCCCCcceehh
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYWESTT 362 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~w~~~~ 362 (370)
+...||.|++. -.|.. .....+|..||..|-.-.
T Consensus 7 ~iL~CP~ck~~-L~~~~-----~~~~LiC~~cg~~YPI~d 40 (70)
T 2js4_A 7 DILVCPVCKGR-LEFQR-----AQAELVCNADRLAFPVRD 40 (70)
T ss_dssp CCCBCTTTCCB-EEEET-----TTTEEEETTTTEEEEEET
T ss_pred hheECCCCCCc-CEEeC-----CCCEEEcCCCCceecCCC
Confidence 56789999994 22321 123788999998775543
No 65
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=33.82 E-value=17 Score=25.11 Aligned_cols=30 Identities=23% Similarity=0.507 Sum_probs=15.2
Q ss_pred cccccCCCCcceEEEeeccccCCCceeccCCCCc
Q 017510 324 RYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQY 357 (370)
Q Consensus 324 ~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~ 357 (370)
.+.|.+||.. .++.|+ .----+.|.-||.+
T Consensus 3 iY~C~rCg~~-fs~~el---~~lP~IrCpyCGyr 32 (48)
T 4ayb_P 3 VYRCGKCWKT-FTDEQL---KVLPGVRCPYCGYK 32 (48)
T ss_dssp --CCCCTTTT-CCCCCS---CCCSSSCCTTTCCS
T ss_pred EEEeeccCCC-ccHHHH---hhCCCcccCccCcE
Confidence 4678888753 222222 11115678888876
No 66
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=33.65 E-value=13 Score=38.21 Aligned_cols=13 Identities=38% Similarity=0.871 Sum_probs=10.8
Q ss_pred ceeccCCCCcceeh
Q 017510 348 RIKCLNCYQYWEST 361 (370)
Q Consensus 348 f~~C~~Cg~~w~~~ 361 (370)
...|. ||++|-.-
T Consensus 641 ~~~c~-~~~~~g~~ 653 (699)
T 4gl2_A 641 EIICK-CGQAWGTM 653 (699)
T ss_dssp EEECS-SSCEEEEE
T ss_pred cEEee-cCchhhHH
Confidence 77898 99999763
No 67
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=31.96 E-value=20 Score=26.52 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=22.5
Q ss_pred ccccccCCCCcceEEEeeccccCCCceeccCCCCcceehh
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYWESTT 362 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~w~~~~ 362 (370)
+...||.|++. -.|.. .....+|..||..|-.-.
T Consensus 7 ~iL~CP~ck~~-L~~~~-----~~~~LiC~~cg~~YPI~d 40 (68)
T 2hf1_A 7 EILVCPLCKGP-LVFDK-----SKDELICKGDRLAFPIKD 40 (68)
T ss_dssp EECBCTTTCCB-CEEET-----TTTEEEETTTTEEEEEET
T ss_pred hheECCCCCCc-CeEeC-----CCCEEEcCCCCcEecCCC
Confidence 56789999974 23321 123788999997765533
No 68
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=31.94 E-value=28 Score=34.43 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=23.8
Q ss_pred cccccccCCCCcceEEEeeccccC-CC----ceeccCCCCcce
Q 017510 322 STRYMCGRCGHKKTTNHGNDQNSS-AK----RIKCLNCYQYWE 359 (370)
Q Consensus 322 t~~~~C~~C~~~~~~~~q~~Q~Rs-aD----f~~C~~Cg~~w~ 359 (370)
.-...||.|+..-.+-+.+-.+-. .+ -+.|.+||++..
T Consensus 218 ~~~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~n 260 (404)
T 2qkd_A 218 QFNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTN 260 (404)
T ss_dssp EEEECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEEE
T ss_pred eecccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCccc
Confidence 345679999987555433312222 12 677999999864
No 69
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=30.19 E-value=20 Score=26.61 Aligned_cols=34 Identities=6% Similarity=0.029 Sum_probs=22.3
Q ss_pred ccccccCCCCcceEEEeeccccCCCceeccCCCCcceehh
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYWESTT 362 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~w~~~~ 362 (370)
+...||.|++.= .|. +.....+|..||..|-.-.
T Consensus 7 eiL~CP~ck~~L-~~~-----~~~~~LiC~~cg~~YPI~d 40 (69)
T 2pk7_A 7 DILACPICKGPL-KLS-----ADKTELISKGAGLAYPIRD 40 (69)
T ss_dssp GTCCCTTTCCCC-EEC-----TTSSEEEETTTTEEEEEET
T ss_pred hheeCCCCCCcC-eEe-----CCCCEEEcCCCCcEecCcC
Confidence 567899999752 221 1223888999997765533
No 70
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=30.06 E-value=7.6 Score=29.80 Aligned_cols=37 Identities=16% Similarity=0.518 Sum_probs=26.1
Q ss_pred cccccccCCCC----cceEEEeeccccCCCceeccCCCCcce
Q 017510 322 STRYMCGRCGH----KKTTNHGNDQNSSAKRIKCLNCYQYWE 359 (370)
Q Consensus 322 t~~~~C~~C~~----~~~~~~q~~Q~RsaDf~~C~~Cg~~w~ 359 (370)
.-.|.|..||. +++.-+.. |=|.+.+++|..|+..+.
T Consensus 8 MV~F~C~~Cgd~lKK~kv~~H~~-~Cr~~~~~SCIDC~~~F~ 48 (79)
T 1wjv_A 8 MVFFTCNACGESVKKIQVEKHVS-NCRNCECLSCIDCGKDFW 48 (79)
T ss_dssp CCEEEESSSCCEEETTHHHHHHH-HCTTCCEEEETTTTEEEE
T ss_pred eeEEEcCCCCCeeecccchhHHh-hCCCCCcEEecccCCeeC
Confidence 34689999985 23333433 556667999999998875
No 71
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=29.85 E-value=17 Score=24.03 Aligned_cols=13 Identities=23% Similarity=0.682 Sum_probs=9.6
Q ss_pred ccccccccCCCCc
Q 017510 321 HSTRYMCGRCGHK 333 (370)
Q Consensus 321 ~t~~~~C~~C~~~ 333 (370)
..+.+.|++||..
T Consensus 6 ~~~~~~C~~C~~~ 18 (39)
T 2i5o_A 6 AEDQVPCEKCGSL 18 (39)
T ss_dssp CCCEEECTTTCCE
T ss_pred cCCCcccccccCc
Confidence 4567889999765
No 72
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=29.29 E-value=22 Score=30.32 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=27.2
Q ss_pred cccccccccCCCCcceEEEee---------------------------ccccCCC-----ceeccCCCCccee
Q 017510 320 YHSTRYMCGRCGHKKTTNHGN---------------------------DQNSSAK-----RIKCLNCYQYWES 360 (370)
Q Consensus 320 ~~t~~~~C~~C~~~~~~~~q~---------------------------~Q~RsaD-----f~~C~~Cg~~w~~ 360 (370)
+.+-.+-|.+|...-|+-..+ .|..=+| .+.|.+||+.|-.
T Consensus 9 ~s~vkllCrkC~~~~C~g~DIr~ie~~HhVnv~p~F~~~y~~~~~~~~~~k~f~d~~~~g~I~C~~Cgq~WG~ 81 (145)
T 3eqt_A 9 VEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPNFSNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVWGL 81 (145)
T ss_dssp GGGCEEEETTTCCEEEEGGGEEEETTTEEEECCGGGGGGEEEEEEECCCSSCCSSEEEEEEEEETTTCCEEEE
T ss_pred chheEEECCCCCeeEEeccceEEeccceEEeeChhheeeEEeccCCCCCCcccccccCCcEEEchhhChhhHh
Confidence 445678999998764443222 0223344 7889999999975
No 73
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=29.23 E-value=36 Score=25.05 Aligned_cols=35 Identities=3% Similarity=-0.079 Sum_probs=23.1
Q ss_pred ccccccCCCCcceEEEeeccccCCCceeccCCCCcceehhh
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQYWESTTA 363 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~w~~~~~ 363 (370)
+...||.|++. -.|... ....+|..||..|-.-..
T Consensus 9 eiL~CP~ck~~-L~~~~~-----~g~LvC~~c~~~YPI~dG 43 (67)
T 2jny_A 9 EVLACPKDKGP-LRYLES-----EQLLVNERLNLAYRIDDG 43 (67)
T ss_dssp CCCBCTTTCCB-CEEETT-----TTEEEETTTTEEEEEETT
T ss_pred HHhCCCCCCCc-CeEeCC-----CCEEEcCCCCccccCCCC
Confidence 56889999984 333321 126789999977755433
No 74
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=29.23 E-value=6.6 Score=26.55 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=21.7
Q ss_pred cccCCCCcceEEEeeccccCCC-ceeccCCCCccee
Q 017510 326 MCGRCGHKKTTNHGNDQNSSAK-RIKCLNCYQYWES 360 (370)
Q Consensus 326 ~C~~C~~~~~~~~q~~Q~RsaD-f~~C~~Cg~~w~~ 360 (370)
.|-.|+-..+.. |.|..+ ...|+.||-+|+-
T Consensus 3 ~C~~C~tt~Tp~----WR~gp~G~~LCNaCGl~~k~ 34 (43)
T 2vut_I 3 TCTNCFTQTTPL----WRRNPEGQPLCNACGLFLKL 34 (43)
T ss_dssp CCSSSCCCCCSC----CEECTTSCEECHHHHHHHHH
T ss_pred cCCccCCCCCCc----cccCCCCCcccHHHHHHHHH
Confidence 588898765543 434444 7889999988864
No 75
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=28.14 E-value=42 Score=32.40 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=24.7
Q ss_pred cccccccCCCCcc--eEEE-eecc-c-----cCCC---ceeccCCCCccee
Q 017510 322 STRYMCGRCGHKK--TTNH-GNDQ-N-----SSAK---RIKCLNCYQYWES 360 (370)
Q Consensus 322 t~~~~C~~C~~~~--~~~~-q~~Q-~-----RsaD---f~~C~~Cg~~w~~ 360 (370)
.+...|..||+.. +.+. .... + ..|+ -|.|..||+.=+|
T Consensus 117 vn~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~rF 167 (335)
T 1x3z_A 117 CNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRF 167 (335)
T ss_dssp CSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEE
T ss_pred eCCCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCccccc
Confidence 3568899999874 3341 2201 1 1233 7889999997665
No 76
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=26.84 E-value=21 Score=25.73 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=16.9
Q ss_pred cccccccCCCCcceEEEeeccccCCCceeccCCCC
Q 017510 322 STRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQ 356 (370)
Q Consensus 322 t~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~ 356 (370)
.....|+.||+. ..- ...|..||+
T Consensus 28 p~l~~c~~cGe~----~~~-------H~vc~~CG~ 51 (60)
T 3v2d_5 28 PTLVPCPECKAM----KPP-------HTVCPECGY 51 (60)
T ss_dssp CCCEECTTTCCE----ECT-------TSCCTTTCE
T ss_pred CceeECCCCCCe----ecc-------eEEcCCCCc
Confidence 457889999983 333 555888883
No 77
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=26.60 E-value=12 Score=24.67 Aligned_cols=37 Identities=16% Similarity=0.444 Sum_probs=21.3
Q ss_pred ccccCCCCcceEEEee---ccccCCC-ceeccCCCCcceeh
Q 017510 325 YMCGRCGHKKTTNHGN---DQNSSAK-RIKCLNCYQYWEST 361 (370)
Q Consensus 325 ~~C~~C~~~~~~~~q~---~Q~RsaD-f~~C~~Cg~~w~~~ 361 (370)
|.|+.|+..=.....+ .++-.++ -|.|..||..+..-
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 42 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTK 42 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSH
T ss_pred CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCH
Confidence 6788888653322222 1222333 78899999876543
No 78
>2gut_A ARC/mediator, positive cofactor 2 glutamine/Q- rich-associated protein; KIX, 3 helical bundle, transcription; NMR {Homo sapiens}
Probab=26.51 E-value=74 Score=24.15 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCchhhhhhcCCCChHHHHHHHHHHHHHhhCCCchhhhHHHHhHHhhcC
Q 017510 190 DYFRERIREKLYKALSKVSGEVDEEVQDKLNGCDPIRVAITAESLMFEKWGHSFGTYEVKYRSILFNLM 258 (370)
Q Consensus 190 d~vR~k~r~lL~~aL~~~~~~~~~~~~~~~~~~~~~~~A~~IE~~if~~~~~~~~~Yk~k~Rsl~~NLK 258 (370)
..+|++++..|-+++.... -+ . ..=|.++|.++|.... +..+|-.-+=-|+..++
T Consensus 12 ~~FRq~vi~~i~~a~~~~G-~~---~---------~k~a~emEnhvF~Ka~-tkdEYL~lvarli~h~r 66 (77)
T 2gut_A 12 TAFRQKLVSQIEDAMRKAG-VA---H---------SKSSKDMESHVFLKAK-TRDEYLSLVARLIIHFR 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---C---------SSCHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhC-CC---C---------CCCHHHHHHHHHhccC-cccchHHHHHHHHHHHH
Confidence 5789999999999998732 11 1 1346799999998753 45688877777776665
No 79
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=26.15 E-value=34 Score=32.90 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=17.6
Q ss_pred cccccCCCCcc-eEEEeeccccCCCceeccCCCC
Q 017510 324 RYMCGRCGHKK-TTNHGNDQNSSAKRIKCLNCYQ 356 (370)
Q Consensus 324 ~~~C~~C~~~~-~~~~q~~Q~RsaDf~~C~~Cg~ 356 (370)
...||.||... ..++.- +...+.|..||-
T Consensus 21 ~~~Cp~C~~~~~~lv~D~----~~G~~vC~~CGl 50 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERF----SEGDVVCALCGL 50 (345)
T ss_dssp -CCCSSCCCSSCCEEEEG----GGTEEEETTTCB
T ss_pred CCcCCCCCCCCCceeEEC----CCCcEEeCCCCC
Confidence 45799999832 223322 222677999993
No 80
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=25.62 E-value=24 Score=28.00 Aligned_cols=27 Identities=37% Similarity=0.685 Sum_probs=19.0
Q ss_pred cccccccCCCCcceEEEeeccccCCCceeccCCCCc
Q 017510 322 STRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQY 357 (370)
Q Consensus 322 t~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~~ 357 (370)
.....|++||.. .|+- | -.+|-.||+.
T Consensus 14 KtH~lCrRCG~~--sfH~--q-----K~~CgkCGYp 40 (97)
T 2zkr_2 14 KTHTLCRRCGSK--AYHL--Q-----KSTCGKCGYP 40 (97)
T ss_dssp CCEECCTTTCSS--CEET--T-----SCCBTTTCTT
T ss_pred CCCCcCCCCCCc--cCcC--c-----cccCcccCCc
Confidence 346789999987 3332 3 5689999964
No 81
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.44 E-value=25 Score=19.02 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=7.4
Q ss_pred eeccCCCCccee
Q 017510 349 IKCLNCYQYWES 360 (370)
Q Consensus 349 ~~C~~Cg~~w~~ 360 (370)
|.|..||..+..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvh_A 4 FSCSLCPQRSRD 15 (27)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCcChhhCC
Confidence 557777766544
No 82
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=23.66 E-value=43 Score=30.95 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=22.6
Q ss_pred cccccccccCCCCcceEEEeeccccC-CC-ceeccCCCCc-cee
Q 017510 320 YHSTRYMCGRCGHKKTTNHGNDQNSS-AK-RIKCLNCYQY-WES 360 (370)
Q Consensus 320 ~~t~~~~C~~C~~~~~~~~q~~Q~Rs-aD-f~~C~~Cg~~-w~~ 360 (370)
.....|.|.+||+. .|.. |+.. .. -..|.+|+.+ |..
T Consensus 130 ~~~~~f~C~~C~~~--~~v~--~~~~~~~~P~~Cp~C~~~~f~l 169 (279)
T 1ltl_A 130 IVKAVFECRGCMRH--HAVT--QSTNMITEPSLCSECGGRSFRL 169 (279)
T ss_dssp EEEEEEEETTTCCE--EEEE--CSSSSCCCCSCCTTTCCCCEEE
T ss_pred EEEEEEEcCCCCCE--EEEE--ecCCcccCCCcCCCCCCCCcEE
Confidence 34466999999954 2333 4321 11 3469999987 554
No 83
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=23.63 E-value=23 Score=33.99 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=17.7
Q ss_pred cccccCCCCcceEEEeeccccCCC-ceeccCCCC
Q 017510 324 RYMCGRCGHKKTTNHGNDQNSSAK-RIKCLNCYQ 356 (370)
Q Consensus 324 ~~~C~~C~~~~~~~~q~~Q~RsaD-f~~C~~Cg~ 356 (370)
...||.||..... + -...+. .+.|..||-
T Consensus 21 ~~~Cp~Cg~~~~~---i-v~D~~~G~~vC~~CG~ 50 (345)
T 3k7a_M 21 VLTCPECKVYPPK---I-VERFSEGDVVCALCGL 50 (345)
T ss_dssp CCCCSTTCCSCCC---C-CCCSSSCSCCCSSSCC
T ss_pred CCcCcCCCCCCCc---e-EEECCCCCEecCCCCe
Confidence 4579999986311 1 111222 678999995
No 84
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=23.26 E-value=18 Score=24.14 Aligned_cols=37 Identities=11% Similarity=0.326 Sum_probs=21.7
Q ss_pred ccccCCCCcceEEEee---ccccCCC-ceeccCCCCcceeh
Q 017510 325 YMCGRCGHKKTTNHGN---DQNSSAK-RIKCLNCYQYWEST 361 (370)
Q Consensus 325 ~~C~~C~~~~~~~~q~---~Q~RsaD-f~~C~~Cg~~w~~~ 361 (370)
|.|+.|+..=.....+ .++-..+ -|.|..||..+..-
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 43 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRR 43 (60)
T ss_dssp BCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSH
T ss_pred CcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCH
Confidence 7888888753332222 1222233 78899999876543
No 85
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=21.89 E-value=36 Score=24.38 Aligned_cols=26 Identities=35% Similarity=0.754 Sum_probs=18.8
Q ss_pred cccccccCCCCcceEEEeeccccCCCceeccCCCC
Q 017510 322 STRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQ 356 (370)
Q Consensus 322 t~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~ 356 (370)
.....|.+||.+ .|+- | --+|-.||+
T Consensus 15 ktH~~CrRCG~~--syH~--q-----K~~Ca~CGy 40 (57)
T 1vq8_1 15 TTHTKCRRCGEK--SYHT--K-----KKVCSSCGF 40 (57)
T ss_dssp CCEEECTTTCSE--EEET--T-----TTEETTTCT
T ss_pred CccccccccCCh--hhhc--c-----ccccccccC
Confidence 346789999986 4443 3 457999997
No 86
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.88 E-value=29 Score=18.78 Aligned_cols=12 Identities=17% Similarity=0.509 Sum_probs=7.6
Q ss_pred eeccCCCCccee
Q 017510 349 IKCLNCYQYWES 360 (370)
Q Consensus 349 ~~C~~Cg~~w~~ 360 (370)
|.|..||..+..
T Consensus 4 ~~C~~C~~~f~~ 15 (30)
T 2m0d_A 4 YQCDYCGRSFSD 15 (30)
T ss_dssp EECTTTCCEESC
T ss_pred ccCCCCCcccCC
Confidence 567777766544
No 87
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=21.63 E-value=20 Score=25.17 Aligned_cols=43 Identities=14% Similarity=0.325 Sum_probs=26.4
Q ss_pred ccccccccCCCCcceEEEee---ccccCCC-ceeccCCCCcceehhh
Q 017510 321 HSTRYMCGRCGHKKTTNHGN---DQNSSAK-RIKCLNCYQYWESTTA 363 (370)
Q Consensus 321 ~t~~~~C~~C~~~~~~~~q~---~Q~RsaD-f~~C~~Cg~~w~~~~~ 363 (370)
....|.|..|+..=.....+ .++-..+ -|.|..||..+..-..
T Consensus 14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~ 60 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPAN 60 (74)
T ss_dssp CCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHH
T ss_pred CCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHH
Confidence 34569999998753332222 0122233 7899999988765443
No 88
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.26 E-value=32 Score=18.56 Aligned_cols=12 Identities=17% Similarity=0.431 Sum_probs=7.2
Q ss_pred eeccCCCCccee
Q 017510 349 IKCLNCYQYWES 360 (370)
Q Consensus 349 ~~C~~Cg~~w~~ 360 (370)
|.|..||..|..
T Consensus 4 ~~C~~C~k~f~~ 15 (28)
T 2kvf_A 4 YSCSVCGKRFSL 15 (28)
T ss_dssp EECSSSCCEESC
T ss_pred ccCCCCCcccCC
Confidence 456667666543
No 89
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.70 E-value=20 Score=19.22 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=7.0
Q ss_pred eeccCCCCccee
Q 017510 349 IKCLNCYQYWES 360 (370)
Q Consensus 349 ~~C~~Cg~~w~~ 360 (370)
|.|..||..+..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 456666665544
No 90
>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A
Probab=21.00 E-value=35 Score=29.01 Aligned_cols=41 Identities=17% Similarity=0.465 Sum_probs=27.9
Q ss_pred cccccccccCCCCcceEEEee-------------------------ccccCCC-----ceecc--CCCCccee
Q 017510 320 YHSTRYMCGRCGHKKTTNHGN-------------------------DQNSSAK-----RIKCL--NCYQYWES 360 (370)
Q Consensus 320 ~~t~~~~C~~C~~~~~~~~q~-------------------------~Q~RsaD-----f~~C~--~Cg~~w~~ 360 (370)
..+-.+.|.+|...-|+-..+ .|.+=.| .+.|. +||+.|-.
T Consensus 23 ~~~v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~F~~~y~v~~~~~~k~f~d~~~~g~I~C~~~~Cg~~WG~ 95 (145)
T 2qfd_A 23 KENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFKECFVSRPHPKPKQFSSFEKRAKIFCARQNCSHDWGI 95 (145)
T ss_dssp CCCCEEEETTTCCEEEEGGGEEEETTTEEEECSTTGGGTEEEEECSSCCCCSSEEEEEEEEECSTTTCCEEEE
T ss_pred ccceEEEccCCCeeEEcccceeEecCCcEEecCcCceeeEEEcCCcccchhhceeCCceEEeCCcccCcchhc
Confidence 345678999999876664444 1222233 78899 99999975
No 91
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Probab=20.95 E-value=35 Score=28.50 Aligned_cols=13 Identities=31% Similarity=0.922 Sum_probs=11.6
Q ss_pred ceecc--CCCCccee
Q 017510 348 RIKCL--NCYQYWES 360 (370)
Q Consensus 348 f~~C~--~Cg~~w~~ 360 (370)
...|. +||+.|-.
T Consensus 61 ~I~C~~~~Cg~~WG~ 75 (131)
T 4a2v_A 61 KMYCRNNNCQHDWGI 75 (131)
T ss_dssp EEEESCTTTCCEEEE
T ss_pred EEEeCccccChhhhh
Confidence 78899 99999975
No 92
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=20.90 E-value=29 Score=21.81 Aligned_cols=18 Identities=11% Similarity=0.464 Sum_probs=11.8
Q ss_pred ccccccCCCCcceEEEee
Q 017510 323 TRYMCGRCGHKKTTNHGN 340 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~ 340 (370)
++-.|+.|+..+-...+.
T Consensus 5 gDW~C~~C~~~Nfa~R~~ 22 (33)
T 2k1p_A 5 NDWQCKTCSNVNWARRSE 22 (33)
T ss_dssp SSCBCSSSCCBCCTTCSB
T ss_pred CCcccCCCCCcccccccc
Confidence 456788887766555544
No 93
>1rmk_A MU-O-conotoxin mrvib; beta sheet, cystine knot; NMR {Conus marmoreus} SCOP: g.3.6.1
Probab=20.82 E-value=18 Score=22.47 Aligned_cols=9 Identities=33% Similarity=0.881 Sum_probs=7.8
Q ss_pred CCCcceehh
Q 017510 354 CYQYWESTT 362 (370)
Q Consensus 354 Cg~~w~~~~ 362 (370)
|..+|.||-
T Consensus 2 C~rrW~~C~ 10 (31)
T 1rmk_A 2 CSKKWEYCI 10 (31)
T ss_dssp EECTTSCCC
T ss_pred ccccccccc
Confidence 889999985
No 94
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.69 E-value=20 Score=24.85 Aligned_cols=40 Identities=13% Similarity=0.260 Sum_probs=24.4
Q ss_pred ccccccCCCCcceEEEee---ccccCCC-ceeccCCCCcceehh
Q 017510 323 TRYMCGRCGHKKTTNHGN---DQNSSAK-RIKCLNCYQYWESTT 362 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~---~Q~RsaD-f~~C~~Cg~~w~~~~ 362 (370)
..|.|..|+..=.....+ .++-..+ -|.|..|+..+..-.
T Consensus 8 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~ 51 (70)
T 1x5w_A 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPS 51 (70)
T ss_dssp CSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHH
T ss_pred CCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHH
Confidence 468999998753222222 1222233 789999998876543
No 95
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=20.67 E-value=34 Score=18.53 Aligned_cols=12 Identities=17% Similarity=0.562 Sum_probs=7.5
Q ss_pred eeccCCCCccee
Q 017510 349 IKCLNCYQYWES 360 (370)
Q Consensus 349 ~~C~~Cg~~w~~ 360 (370)
|.|..||..+..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 467777766544
No 96
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.45 E-value=39 Score=24.61 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=18.3
Q ss_pred ccccccCCCCcceEEEeeccccCCCceeccCCCC
Q 017510 323 TRYMCGRCGHKKTTNHGNDQNSSAKRIKCLNCYQ 356 (370)
Q Consensus 323 ~~~~C~~C~~~~~~~~q~~Q~RsaDf~~C~~Cg~ 356 (370)
....|.+||.+ .|.- | --+|-.||.
T Consensus 16 tH~lCrRCG~~--syH~--q-----K~~Ca~CGy 40 (62)
T 3j21_e 16 THIRCRRCGRV--SYNV--K-----KGYCAACGF 40 (62)
T ss_dssp CCCBCSSSCSB--CEET--T-----TTEETTTCT
T ss_pred ceeeecccCcc--hhcc--c-----cccccccCC
Confidence 46789999987 4443 3 467999997
No 97
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.38 E-value=28 Score=18.95 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=7.1
Q ss_pred eeccCCCCccee
Q 017510 349 IKCLNCYQYWES 360 (370)
Q Consensus 349 ~~C~~Cg~~w~~ 360 (370)
|.|..||..+..
T Consensus 4 ~~C~~C~k~f~~ 15 (27)
T 2kvg_A 4 YRCPLCRAGCPS 15 (27)
T ss_dssp EEETTTTEEESC
T ss_pred cCCCCCCcccCC
Confidence 456667665543
No 98
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=20.13 E-value=46 Score=27.74 Aligned_cols=37 Identities=11% Similarity=0.280 Sum_probs=21.3
Q ss_pred ccccccccCCCCcceE---EEee-ccccCCC---------ceeccCCCCc
Q 017510 321 HSTRYMCGRCGHKKTT---NHGN-DQNSSAK---------RIKCLNCYQY 357 (370)
Q Consensus 321 ~t~~~~C~~C~~~~~~---~~q~-~Q~RsaD---------f~~C~~Cg~~ 357 (370)
....+.|..||..-.. +.|+ ...+... |+.|..||+.
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCC
Confidence 4568999999864211 0011 0112221 7889999987
No 99
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=20.05 E-value=14 Score=24.30 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=22.6
Q ss_pred cccccCCCCcceEEEee---ccccCCC-ceeccCCCCcceehh
Q 017510 324 RYMCGRCGHKKTTNHGN---DQNSSAK-RIKCLNCYQYWESTT 362 (370)
Q Consensus 324 ~~~C~~C~~~~~~~~q~---~Q~RsaD-f~~C~~Cg~~w~~~~ 362 (370)
.|.|+.|+..=.....+ .++-..+ -|.|..||..+..-.
T Consensus 4 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 46 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKT 46 (57)
T ss_dssp -CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHH
T ss_pred CccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHH
Confidence 47899998753332222 0122233 688999998765433
Done!