RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 017512
(370 letters)
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 192
Score = 193 bits (491), Expect = 3e-61
Identities = 122/191 (63%), Positives = 150/191 (78%)
Query: 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEA 94
Q+ VR+A+N +DEE+ D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E
Sbjct: 2 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEM 61
Query: 95 GFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA 154
GF GI VGAA GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G VPIVFRGPNGA
Sbjct: 62 GFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGA 121
Query: 155 AAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESF 214
+AGV AQHS C+AAWY PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG F
Sbjct: 122 SAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPF 181
Query: 215 PVSAEVLDSSF 225
E F
Sbjct: 182 EFPPEAQSKDF 192
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B),
Pyr module {Pseudomonas putida [TaxId: 303]}
Length = 204
Score = 187 bits (476), Expect = 7e-59
Identities = 73/208 (35%), Positives = 106/208 (50%), Gaps = 6/208 (2%)
Query: 33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
A M + +AL SA+D + D V + G++VG + G ++ ++GL KYG RV D PI+
Sbjct: 1 ATTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPIS 60
Query: 93 EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
E+G G VG YGL+PVVE ++ A D I++ A+ Y S+G+ P+ R P
Sbjct: 61 ESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPC 120
Query: 153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
G G HS A + V GL+ + P + DA+GLL A+I DPV+FLE + LY
Sbjct: 121 GGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNG 180
Query: 213 SFPVSAEVLDSSFCLPIGK--AKIEREG 238
F + P K +G
Sbjct: 181 PF----DGHHDRPVTPWSKHPHSAVPDG 204
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB,
N-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 192
Score = 182 bits (462), Expect = 6e-57
Identities = 73/194 (37%), Positives = 106/194 (54%), Gaps = 3/194 (1%)
Query: 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
QM + +A+ AL E+ DP V + GE+VG G ++ ++GL ++G +RV DTP+ E+G
Sbjct: 2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 61
Query: 96 FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
G+ +G A G +PV E F F + +D I A+ Y + G+ +PI R P G
Sbjct: 62 IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 121
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
HS A PGLKV+ P + DA+GLL +AIRD DPV+FLE+ LY
Sbjct: 122 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRS--- 178
Query: 216 VSAEVLDSSFCLPI 229
EV + + +PI
Sbjct: 179 FRQEVPEGEYTIPI 192
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate
dehydrogenase, Pyr module {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 191
Score = 165 bits (418), Expect = 2e-50
Identities = 77/180 (42%), Positives = 108/180 (60%)
Query: 31 SSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP 90
+ V + +A+N AL EEM D +V ++GE+VG+ G + +++GL E++GPERV+DTP
Sbjct: 2 AGVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTP 61
Query: 91 ITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG 150
+ E G G +G A GLKPV E +F D ++N AK Y S G P+V R
Sbjct: 62 LNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRT 121
Query: 151 PNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLY 210
P G+ G HS+ A + PGL V+ P + +A+GLLKAAIR DPVVFLE ++LY
Sbjct: 122 PVGSGTRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILY 181
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 203
Score = 163 bits (413), Expect = 2e-49
Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 5/191 (2%)
Query: 30 YSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDT 89
++M + +++ SALD ++ DP + GE+V + G ++ + GL +KYG +RV +T
Sbjct: 13 EYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNT 71
Query: 90 PITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVF- 148
P+ E G G G+G A G + E ++ A D I+N AAK Y S + +
Sbjct: 72 PLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTI 131
Query: 149 RGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENEL 208
R P G HS A++A PG+KV+ P S A+GLL + I D +P +F E ++
Sbjct: 132 RSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKI 191
Query: 209 LY---GESFPV 216
LY E P+
Sbjct: 192 LYRAAAEEVPI 202
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid
dehydrogenase, Pyr module {Thermus thermophilus [TaxId:
274]}
Length = 186
Score = 148 bits (375), Expect = 4e-44
Identities = 80/176 (45%), Positives = 114/176 (64%)
Query: 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
M + +ALN ALDEEM+ DP+V ++GE+VG+ G + +++GLL+KYGP+RV+DTP++EA
Sbjct: 2 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAA 61
Query: 96 FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
G +G A +GL+PV E ++ D +++ AK Y S GQ + P+V R P+G
Sbjct: 62 IVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGG 121
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYG 211
G HS A + GLKV++ + DA+GLLKAAIRD DPVVFLE + LY
Sbjct: 122 VRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYR 177
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate
dehydrogenase, C-domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 118 bits (296), Expect = 5e-33
Identities = 78/136 (57%), Positives = 102/136 (75%), Gaps = 1/136 (0%)
Query: 227 LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINAS 286
+PIGKAKIER+G +T+ + S+ VG L+AA +L+KEG+ EVIN+R+IRP+D TI AS
Sbjct: 2 IPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEAS 61
Query: 287 VRKTNRLVTVEEGFPQHGVGAEICASVI-EESFGYLDAPVERIAGADVPMPYAANLERMA 345
V KTN LVTVE G+PQ GVGAEICA ++ +F +LDAP R+ GADVPMPYA LE +
Sbjct: 62 VMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNS 121
Query: 346 VPQVEDIVRAAKRACY 361
+PQV+DI+ A K+
Sbjct: 122 IPQVKDIIFAIKKTLN 137
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid
dehydrogenase {Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 116 bits (291), Expect = 2e-32
Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 2/135 (1%)
Query: 225 FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTIN 284
+ LPIGKA + REGKD+T+ + ++ L+AA LAK G+SAEV++LR++ P D +
Sbjct: 2 YTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVM 61
Query: 285 ASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERM 344
SV KT R+V V + +E+ A++ E+ L AP R+ G D P PYA +++
Sbjct: 62 NSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA--QDKL 119
Query: 345 AVPQVEDIVRAAKRA 359
+P V I+ AAKRA
Sbjct: 120 YLPTVTRILNAAKRA 134
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b,
C-domain {Pseudomonas putida [TaxId: 303]}
Length = 134
Score = 116 bits (291), Expect = 2e-32
Identities = 51/134 (38%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 225 FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTIN 284
+ +P+ KA I R G DV++ + V ++ + G+ AEVI+LRS+ PLD TI
Sbjct: 2 YTVPLDKAAITRPGNDVSVLTYGTTVYVAQ---VAAEESGVDAEVIDLRSLWPLDLDTIV 58
Query: 285 ASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERM 344
SV+KT R V V E G GAE+ + V E F +L+AP+ER+ G D P P+A E
Sbjct: 59 ESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHA--QEWA 116
Query: 345 AVPQVEDIVRAAKR 358
P + A K+
Sbjct: 117 YFPGPSRVGAALKK 130
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB,
C-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 132
Score = 112 bits (280), Expect = 7e-31
Identities = 60/129 (46%), Positives = 84/129 (65%), Gaps = 1/129 (0%)
Query: 230 GKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK 289
GKA I+REGKD+TI A+ +V SLKAA L KEGISAEV++LR+++PLD TI SV K
Sbjct: 1 GKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIETIIGSVEK 60
Query: 290 TNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQV 349
T R + V+E Q G+ A + A + E + L+APV R+A D P+ A E + +P
Sbjct: 61 TGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPF-AQAESVWLPNF 119
Query: 350 EDIVRAAKR 358
+D++ AK+
Sbjct: 120 KDVIETAKK 128
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 138
Score = 112 bits (280), Expect = 9e-31
Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Query: 225 FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEI-LAKEGISAEVINLRSIRPLDRSTI 283
+ +P+ +A++ +EG DVT+ A+ V + + A + K G+S EVI+LR+I P D TI
Sbjct: 2 YNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTI 61
Query: 284 NASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLER 343
SV KT RL+ E G +EI ++V EE F L+AP+ R+ G D P P+ E
Sbjct: 62 CKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHI--FEP 119
Query: 344 MAVPQVEDIVRAAKR 358
+P A ++
Sbjct: 120 FYIPDKWKCYDALRK 134
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate
dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum
[TaxId: 13773]}
Length = 135
Score = 103 bits (257), Expect = 2e-27
Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 4/134 (2%)
Query: 225 FCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTIN 284
+ + IGKA++ REG DVT+ + +V +L+AAE + EV++L+++ PLD T+
Sbjct: 2 YVVEIGKARVAREGDDVTLVTYGAVVHKALEAAERVKASV---EVVDLQTLNPLDFDTVL 58
Query: 285 ASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERM 344
SV KT RL+ + G+GAE+ A V E++ L APV R+AG DVP A +
Sbjct: 59 KSVSKTGRLIIAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPIA-ADAA 117
Query: 345 AVPQVEDIVRAAKR 358
P VE I++A +
Sbjct: 118 YAPTVERIIKAIEY 131
>d2c42a3 c.48.1.3 (A:259-415) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain II {Desulfovibrio africanus [TaxId: 873]}
Length = 157
Score = 50.7 bits (121), Expect = 2e-08
Identities = 14/91 (15%), Positives = 33/91 (36%)
Query: 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299
+ I + + LA +G +I +R RP A++ + +++TV +
Sbjct: 12 ERVIVSMGSSCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDR 71
Query: 300 FPQHGVGAEICASVIEESFGYLDAPVERIAG 330
+ G + + +F + +I
Sbjct: 72 TKEPGAPGDPLYLDVCSAFVERGEAMPKILA 102
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module
{Escherichia coli [TaxId: 562]}
Length = 195
Score = 36.4 bits (83), Expect = 0.002
Identities = 20/166 (12%), Positives = 38/166 (22%), Gaps = 9/166 (5%)
Query: 40 REALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGI 99
R+A +A++ P+ ++ + + + + E G T I
Sbjct: 26 RKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDAAGNYIHYGVREFGMTAI 85
Query: 100 GVGA-AYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGV 158
G + G P + Q V + G
Sbjct: 86 ANGISLHGGFLPYTSTFLMFVEYARNAVRMA-------ALMKQRQVMVYTHDSIGLGEDG 138
Query: 159 GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPD-PVVF 203
A P + P ++ K + D P
Sbjct: 139 PTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTAL 184
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 146
Score = 26.6 bits (58), Expect = 3.7
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 6/89 (6%)
Query: 235 EREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLV 294
+ D+ + A V LS++AA+ LA + I A V++L D+ + + V
Sbjct: 17 DVANPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNV 76
Query: 295 T---VEEGFPQ---HGVGAEICASVIEES 317
VE S
Sbjct: 77 PIMSVEVLATTCWGKYAHQSFGIDRFGAS 105
>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus
thermophilus [TaxId: 274]}
Length = 230
Score = 26.9 bits (59), Expect = 3.7
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 158 VGAQHSHCYAAWYASVPGLKVL 179
VGA S A++ + G++V
Sbjct: 8 VGAGFSGAETAFWLAQKGVRVG 29
>d2bpa1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage
phi-X174 [TaxId: 10847]}
Length = 426
Score = 27.1 bits (60), Expect = 4.3
Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 3/103 (2%)
Query: 79 EKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMS 138
K+ + V TP+ TG AA+ G Q +I N+ K+ +M
Sbjct: 82 IKFMKDGVNATPLPTVNTTGYIDHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWM- 140
Query: 139 SGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSP 181
N A G + H W A +P LS
Sbjct: 141 --PDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSR 181
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max)
[TaxId: 3847]}
Length = 304
Score = 26.6 bits (58), Expect = 4.8
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 347 PQVEDIVRAAKRACYRSVPMAAAA 370
P + IV + P A+
Sbjct: 12 PNLFPIVFGVIFDASFTDPRIGAS 35
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 297
Score = 26.7 bits (57), Expect = 5.2
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 158 VGAQHSHCYAAWYASVPGLKVL 179
+G + C + SV G KVL
Sbjct: 11 LGTGITECILSGLLSVDGKKVL 32
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare),
peroxidase 1 [TaxId: 4513]}
Length = 309
Score = 26.6 bits (58), Expect = 5.4
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 347 PQVEDIVRAAKRACYRSVPMAAAA 370
P+ E IVR + R AA
Sbjct: 19 PRAESIVREFVQEAVRKDIGLAAG 42
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea)
[TaxId: 3818]}
Length = 294
Score = 26.6 bits (58), Expect = 5.5
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 347 PQVEDIVRAAKRACYRSVPMAAAA 370
P +++A + A+
Sbjct: 12 PNALSTIKSAVNSAVAKEARMGAS 35
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress
(Arabidopsis thaliana), peroxidase N [TaxId: 3702]}
Length = 300
Score = 26.6 bits (58), Expect = 5.6
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 347 PQVEDIVRAAKRACYRSVPMAAAA 370
P + IVR ++ AA+
Sbjct: 12 PNLVQIVRKQVAIALKAEIRMAAS 35
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia
rusticana) [TaxId: 3704]}
Length = 307
Score = 25.8 bits (56), Expect = 8.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 347 PQVEDIVRAAKRACYRSVPMAAAA 370
P V +IVR RS P AA+
Sbjct: 13 PNVSNIVRDTIVNELRSDPRIAAS 36
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 26.1 bits (56), Expect = 8.3
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 2/90 (2%)
Query: 207 ELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGIS 266
G + D+ + + K + G + + + A L GI
Sbjct: 364 RFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGII 423
Query: 267 AEVINLRSIRPLDRSTINASVRKTNRLVTV 296
E +L SI L T + K N L+T
Sbjct: 424 PEKSDLNSILFL--MTPAETPAKMNNLITQ 451
>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica
napus) [TaxId: 3708]}
Length = 297
Score = 25.9 bits (55), Expect = 8.8
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 2/84 (2%)
Query: 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTV 296
GK I + G A+ LA G AE++ + L+ + K ++ +
Sbjct: 7 RGKRAFIAGIADDNGYGWAVAKSLAAAG--AEILVGTWVPALNIFETSLRRGKFDQSRVL 64
Query: 297 EEGFPQHGVGAEICASVIEESFGY 320
+G +V +
Sbjct: 65 PDGSLMEIKKVYPLDAVFDNPEDV 88
>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 99
Score = 24.8 bits (54), Expect = 9.0
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 237 EGKDVTITAFSKIVGLSLKAAEILAKEGI---------SAEVINLRSIRPLDRSTINASV 287
+ DV ++A + + EIL G ++ + RP+ ++ I ++
Sbjct: 27 QYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDARGRPVQKAKIEITL 86
Query: 288 RKT 290
K+
Sbjct: 87 VKS 89
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress
(Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]}
Length = 306
Score = 25.8 bits (56), Expect = 9.5
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 347 PQVEDIVRAAKRACYRSVPMAAAA 370
P IVR+ + +S A+
Sbjct: 13 PNASAIVRSTIQQALQSDTRIGAS 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.380
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,359,738
Number of extensions: 64607
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 30
Length of query: 370
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 283
Effective length of database: 1,213,086
Effective search space: 343303338
Effective search space used: 343303338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)