Query 017513
Match_columns 370
No_of_seqs 156 out of 1542
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:14:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02683 pyruvate dehydrogenas 100.0 2.4E-75 5.2E-80 569.5 39.6 351 16-366 5-356 (356)
2 CHL00144 odpB pyruvate dehydro 100.0 1.3E-74 2.8E-79 559.2 37.1 324 36-364 3-327 (327)
3 COG0022 AcoB Pyruvate/2-oxoglu 100.0 4.2E-74 9E-79 530.9 31.5 323 36-361 1-323 (324)
4 PRK09212 pyruvate dehydrogenas 100.0 7.7E-72 1.7E-76 540.5 38.5 324 35-363 2-326 (327)
5 PRK11892 pyruvate dehydrogenas 100.0 2.8E-71 6.1E-76 555.4 37.6 323 35-361 140-463 (464)
6 COG3958 Transketolase, C-termi 100.0 3.2E-71 6.8E-76 508.4 33.0 303 35-360 5-312 (312)
7 PTZ00182 3-methyl-2-oxobutanat 100.0 1E-70 2.2E-75 536.8 37.3 324 34-360 32-355 (355)
8 KOG0524 Pyruvate dehydrogenase 100.0 5E-66 1.1E-70 466.3 26.4 327 34-360 32-358 (359)
9 PLN02225 1-deoxy-D-xylulose-5- 100.0 6.6E-64 1.4E-68 516.8 37.3 311 36-365 380-695 (701)
10 COG1154 Dxs Deoxyxylulose-5-ph 100.0 7E-62 1.5E-66 484.0 34.9 308 34-364 313-626 (627)
11 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 6.5E-61 1.4E-65 498.6 37.4 303 36-360 309-616 (617)
12 PLN02582 1-deoxy-D-xylulose-5- 100.0 4E-60 8.6E-65 492.1 37.5 309 36-364 355-670 (677)
13 PRK12571 1-deoxy-D-xylulose-5- 100.0 1.5E-59 3.4E-64 489.7 37.4 310 37-366 319-633 (641)
14 PRK12315 1-deoxy-D-xylulose-5- 100.0 1.5E-58 3.3E-63 478.3 35.7 299 36-361 277-581 (581)
15 PRK05444 1-deoxy-D-xylulose-5- 100.0 3.7E-57 8E-62 469.4 35.3 297 37-360 279-580 (580)
16 PLN02234 1-deoxy-D-xylulose-5- 100.0 2.5E-55 5.5E-60 452.6 32.5 273 36-328 356-633 (641)
17 KOG0525 Branched chain alpha-k 100.0 3.4E-53 7.3E-58 378.0 18.1 330 25-361 30-361 (362)
18 TIGR00232 tktlase_bact transke 100.0 1.7E-49 3.6E-54 415.5 28.9 301 27-360 339-653 (653)
19 PRK05899 transketolase; Review 100.0 2E-49 4.3E-54 415.0 25.9 289 35-360 317-624 (624)
20 PRK12753 transketolase; Review 100.0 1.1E-48 2.5E-53 409.1 30.6 294 34-360 352-663 (663)
21 KOG0523 Transketolase [Carbohy 100.0 1.1E-48 2.3E-53 387.6 25.8 313 25-365 308-630 (632)
22 PLN02790 transketolase 100.0 8.3E-48 1.8E-52 402.8 32.9 301 28-360 335-654 (654)
23 PTZ00089 transketolase; Provis 100.0 6E-48 1.3E-52 404.3 29.1 299 28-362 346-660 (661)
24 PRK12754 transketolase; Review 100.0 1.8E-46 3.9E-51 390.6 27.3 321 7-360 316-663 (663)
25 PRK09405 aceE pyruvate dehydro 100.0 9.4E-45 2E-49 382.1 33.9 313 33-367 491-868 (891)
26 TIGR03186 AKGDH_not_PDH alpha- 100.0 1.4E-44 2.9E-49 380.8 31.3 313 33-367 486-865 (889)
27 PRK13012 2-oxoacid dehydrogena 100.0 3.6E-41 7.8E-46 356.3 31.0 304 33-367 499-873 (896)
28 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 7.2E-42 1.6E-46 300.5 18.1 166 41-207 1-167 (167)
29 COG0021 TktA Transketolase [Ca 100.0 4.4E-36 9.6E-41 301.2 25.1 324 5-361 317-663 (663)
30 cd07033 TPP_PYR_DXS_TK_like Py 100.0 2.5E-36 5.5E-41 263.3 18.2 153 41-207 1-156 (156)
31 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 7.4E-35 1.6E-39 308.9 30.3 292 35-336 584-909 (929)
32 PRK09404 sucA 2-oxoglutarate d 100.0 7.6E-35 1.7E-39 310.1 29.2 292 34-336 581-903 (924)
33 PF02779 Transket_pyr: Transke 100.0 2.9E-34 6.3E-39 255.6 13.4 166 35-211 1-176 (178)
34 smart00861 Transket_pyr Transk 100.0 6.3E-30 1.4E-34 225.5 17.0 155 38-207 1-166 (168)
35 PRK07119 2-ketoisovalerate fer 99.9 1.2E-22 2.6E-27 198.8 27.8 247 83-361 48-350 (352)
36 PF02780 Transketolase_C: Tran 99.9 2.9E-25 6.4E-30 186.2 3.8 123 230-352 1-124 (124)
37 PRK08659 2-oxoglutarate ferred 99.9 9.2E-22 2E-26 194.0 27.7 246 84-359 49-375 (376)
38 TIGR03336 IOR_alpha indolepyru 99.9 4.2E-22 9.1E-27 207.9 25.6 249 84-359 46-335 (595)
39 PRK09627 oorA 2-oxoglutarate-a 99.9 7.3E-22 1.6E-26 194.3 24.0 243 85-359 49-375 (375)
40 PRK09622 porA pyruvate flavodo 99.9 6.1E-20 1.3E-24 183.0 27.1 252 85-361 58-382 (407)
41 PRK08366 vorA 2-ketoisovalerat 99.9 2E-19 4.4E-24 177.7 26.3 209 87-307 52-328 (390)
42 PRK08367 porA pyruvate ferredo 99.8 1.1E-17 2.4E-22 165.8 27.8 250 87-361 53-374 (394)
43 TIGR03710 OAFO_sf 2-oxoacid:ac 99.8 3.8E-18 8.1E-23 176.7 23.7 219 84-313 237-537 (562)
44 PRK05261 putative phosphoketol 99.8 1.9E-17 4.1E-22 173.9 28.6 303 35-360 389-741 (785)
45 COG0674 PorA Pyruvate:ferredox 99.6 3.7E-13 8E-18 132.4 25.7 212 84-307 48-326 (365)
46 TIGR00759 aceE pyruvate dehydr 99.6 4.3E-13 9.2E-18 141.5 27.4 308 32-367 484-862 (885)
47 TIGR02176 pyruv_ox_red pyruvat 99.6 6.1E-13 1.3E-17 147.4 27.9 219 85-315 53-346 (1165)
48 COG4231 Indolepyruvate ferredo 99.5 1.6E-12 3.5E-17 131.8 23.7 253 84-362 58-355 (640)
49 PRK13030 2-oxoacid ferredoxin 99.3 3.7E-10 8.1E-15 124.0 23.1 306 36-362 19-396 (1159)
50 cd06586 TPP_enzyme_PYR Pyrimid 99.3 5.9E-11 1.3E-15 102.4 12.8 117 80-206 32-153 (154)
51 PRK09193 indolepyruvate ferred 99.3 5.9E-10 1.3E-14 122.2 22.3 303 36-362 27-404 (1165)
52 COG2609 AceE Pyruvate dehydrog 99.2 4.1E-09 8.9E-14 107.7 24.1 302 34-366 489-863 (887)
53 PRK13029 2-oxoacid ferredoxin 99.2 1.8E-09 3.9E-14 118.3 23.1 261 84-361 85-417 (1186)
54 PRK12270 kgd alpha-ketoglutara 99.1 1.2E-08 2.5E-13 108.2 22.8 285 34-336 884-1206(1228)
55 PF01855 POR_N: Pyruvate flavo 98.8 1.8E-08 3.8E-13 93.3 9.7 112 86-208 38-155 (230)
56 KOG0451 Predicted 2-oxoglutara 98.8 4.2E-08 9E-13 98.0 12.7 288 34-336 561-892 (913)
57 KOG0450 2-oxoglutarate dehydro 98.8 1.5E-07 3.2E-12 96.2 16.1 286 35-332 647-987 (1017)
58 COG3957 Phosphoketolase [Carbo 98.6 1.1E-06 2.4E-11 90.5 17.0 261 36-314 400-707 (793)
59 COG0567 SucA 2-oxoglutarate de 98.6 3.4E-07 7.4E-12 97.0 12.6 268 34-313 563-863 (906)
60 cd07034 TPP_PYR_PFOR_IOR-alpha 97.7 0.0032 6.9E-08 54.6 16.4 110 83-205 41-158 (160)
61 PF03894 XFP: D-xylulose 5-pho 97.4 0.0056 1.2E-07 53.7 14.2 152 41-196 2-178 (179)
62 cd07035 TPP_PYR_POX_like Pyrim 97.1 0.0061 1.3E-07 52.5 11.1 112 84-206 35-154 (155)
63 PF02776 TPP_enzyme_N: Thiamin 96.8 0.024 5.2E-07 49.9 12.4 126 73-210 30-164 (172)
64 TIGR03845 sulfopyru_alph sulfo 96.5 0.025 5.5E-07 49.2 10.0 108 90-208 40-155 (157)
65 TIGR03297 Ppyr-DeCO2ase phosph 96.4 0.024 5.3E-07 56.0 10.3 116 84-210 27-155 (361)
66 PRK08199 thiamine pyrophosphat 96.3 0.47 1E-05 49.7 19.6 115 85-211 48-171 (557)
67 cd07039 TPP_PYR_POX Pyrimidine 95.8 0.17 3.7E-06 44.3 11.8 112 85-208 40-159 (164)
68 cd02001 TPP_ComE_PpyrDC Thiami 95.7 0.21 4.6E-06 43.3 12.0 113 81-204 33-151 (157)
69 PRK07525 sulfoacetaldehyde ace 95.3 0.61 1.3E-05 49.2 15.8 115 84-210 44-166 (588)
70 PRK08322 acetolactate synthase 95.2 0.94 2E-05 47.2 16.6 115 84-210 39-162 (547)
71 TIGR02418 acolac_catab acetola 95.1 0.9 1.9E-05 47.3 16.2 113 85-209 38-159 (539)
72 PRK07710 acetolactate synthase 95.1 0.48 1E-05 49.7 14.2 114 83-208 53-175 (571)
73 PRK12474 hypothetical protein; 95.0 3.7 8.1E-05 42.5 20.5 113 85-209 45-166 (518)
74 PRK07586 hypothetical protein; 95.0 0.5 1.1E-05 48.9 14.0 202 85-298 41-271 (514)
75 cd07037 TPP_PYR_MenD Pyrimidin 94.9 0.26 5.6E-06 43.1 10.0 109 85-205 37-160 (162)
76 PRK07524 hypothetical protein; 94.9 1.1 2.5E-05 46.5 16.4 114 85-210 41-166 (535)
77 PRK06725 acetolactate synthase 94.8 0.44 9.5E-06 50.1 13.1 114 84-209 53-175 (570)
78 PRK07979 acetolactate synthase 94.7 0.75 1.6E-05 48.3 14.5 113 85-209 44-165 (574)
79 PRK08617 acetolactate synthase 94.7 0.67 1.4E-05 48.4 14.1 155 34-209 2-165 (552)
80 PRK07092 benzoylformate decarb 94.5 1.4 2.9E-05 45.9 15.7 114 85-209 50-172 (530)
81 PRK07418 acetolactate synthase 94.2 1.6 3.5E-05 46.3 15.7 114 84-209 61-183 (616)
82 cd07038 TPP_PYR_PDC_IPDC_like 94.2 1 2.2E-05 39.2 11.9 110 85-206 37-161 (162)
83 PRK08155 acetolactate synthase 94.1 1.1 2.5E-05 46.8 14.3 114 84-209 52-174 (564)
84 TIGR02177 PorB_KorB 2-oxoacid: 93.9 1.2 2.6E-05 42.7 12.7 142 39-204 12-182 (287)
85 PRK08611 pyruvate oxidase; Pro 93.8 1.9 4.1E-05 45.4 15.2 115 84-210 44-166 (576)
86 PRK07282 acetolactate synthase 93.7 1.2 2.7E-05 46.7 13.7 113 85-209 50-171 (566)
87 PLN02470 acetolactate synthase 93.6 1.5 3.3E-05 46.1 14.2 114 84-209 52-174 (585)
88 PRK11866 2-oxoacid ferredoxin 93.5 1.6 3.5E-05 41.7 12.7 145 39-204 18-188 (279)
89 PRK08979 acetolactate synthase 93.5 1.8 3.9E-05 45.5 14.4 114 84-209 43-165 (572)
90 COG4032 Predicted thiamine-pyr 93.4 0.17 3.6E-06 42.9 5.2 110 86-206 43-162 (172)
91 PRK06466 acetolactate synthase 93.4 1.7 3.8E-05 45.6 14.1 114 84-209 43-165 (574)
92 PRK07789 acetolactate synthase 93.4 2.7 5.8E-05 44.6 15.6 114 84-209 70-192 (612)
93 PRK05858 hypothetical protein; 93.4 2.2 4.7E-05 44.5 14.7 114 84-209 43-165 (542)
94 cd02004 TPP_BZL_OCoD_HPCL Thia 93.3 0.72 1.6E-05 40.3 9.6 111 83-204 38-168 (172)
95 TIGR03457 sulphoacet_xsc sulfo 93.2 2.1 4.6E-05 45.0 14.5 114 85-210 41-162 (579)
96 PRK08527 acetolactate synthase 93.1 2.2 4.9E-05 44.7 14.5 113 85-209 43-164 (563)
97 TIGR00118 acolac_lg acetolacta 93.0 2.1 4.6E-05 44.7 14.1 113 85-209 41-162 (558)
98 PRK06456 acetolactate synthase 93.0 0.95 2.1E-05 47.5 11.4 113 85-209 45-166 (572)
99 cd02010 TPP_ALS Thiamine pyrop 92.8 2.2 4.7E-05 37.7 11.9 112 83-205 38-167 (177)
100 TIGR03846 sulfopy_beta sulfopy 92.8 3.1 6.7E-05 37.0 12.8 143 40-205 1-153 (181)
101 TIGR03254 oxalate_oxc oxalyl-C 92.8 1.2 2.5E-05 46.7 11.7 113 85-209 42-165 (554)
102 cd02009 TPP_SHCHC_synthase Thi 92.7 1 2.2E-05 39.6 9.6 112 82-204 40-171 (175)
103 COG0028 IlvB Thiamine pyrophos 92.6 1.5 3.3E-05 45.9 12.3 115 84-209 40-162 (550)
104 cd02014 TPP_POX Thiamine pyrop 92.5 1.8 3.9E-05 38.1 11.0 111 83-204 41-169 (178)
105 PRK09124 pyruvate dehydrogenas 92.5 3.1 6.8E-05 43.7 14.5 113 85-209 43-163 (574)
106 cd03376 TPP_PFOR_porB_like Thi 92.3 4.4 9.5E-05 37.6 13.7 37 168-204 158-196 (235)
107 PRK06965 acetolactate synthase 92.2 1.5 3.2E-05 46.3 11.7 114 84-209 60-182 (587)
108 PF09363 XFP_C: XFP C-terminal 92.2 0.75 1.6E-05 41.5 7.9 115 238-360 34-162 (203)
109 PRK06457 pyruvate dehydrogenas 92.0 1.6 3.5E-05 45.6 11.6 115 84-210 40-162 (549)
110 PRK06048 acetolactate synthase 92.0 1.5 3.3E-05 45.9 11.4 114 84-209 46-168 (561)
111 PRK06882 acetolactate synthase 91.9 1.7 3.7E-05 45.6 11.8 112 85-208 44-164 (574)
112 PRK09107 acetolactate synthase 91.9 3 6.5E-05 44.1 13.6 114 84-209 50-172 (595)
113 PRK07064 hypothetical protein; 91.9 1.6 3.6E-05 45.4 11.5 113 85-209 43-167 (544)
114 PRK08978 acetolactate synthase 91.8 1.3 2.9E-05 46.1 10.8 113 85-209 40-161 (548)
115 PRK08266 hypothetical protein; 91.6 5.1 0.00011 41.7 14.7 114 84-209 44-169 (542)
116 PRK06112 acetolactate synthase 91.2 2.2 4.7E-05 44.9 11.6 115 84-210 50-173 (578)
117 cd03375 TPP_OGFOR Thiamine pyr 91.2 4.2 9E-05 36.4 11.9 26 179-204 155-180 (193)
118 PRK06276 acetolactate synthase 91.2 2.1 4.7E-05 45.1 11.5 113 85-209 40-161 (586)
119 PRK09259 putative oxalyl-CoA d 91.0 2.1 4.6E-05 44.9 11.3 115 84-209 48-172 (569)
120 cd02018 TPP_PFOR Thiamine pyro 91.0 5.8 0.00013 36.8 13.0 37 168-204 160-199 (237)
121 PRK11864 2-ketoisovalerate fer 90.8 1.7 3.7E-05 41.9 9.4 34 171-204 170-203 (300)
122 PRK08327 acetolactate synthase 90.8 7.2 0.00016 41.0 15.0 113 85-209 52-182 (569)
123 PRK06546 pyruvate dehydrogenas 90.4 6.8 0.00015 41.3 14.4 113 85-209 43-163 (578)
124 cd02013 TPP_Xsc_like Thiamine 90.4 2.2 4.8E-05 38.3 9.4 111 83-204 43-175 (196)
125 PRK11269 glyoxylate carboligas 90.3 8.4 0.00018 40.7 15.0 114 84-209 43-166 (591)
126 CHL00099 ilvB acetohydroxyacid 90.2 3 6.5E-05 44.0 11.6 113 85-209 53-174 (585)
127 PRK09628 oorB 2-oxoglutarate-a 90.1 4.9 0.00011 38.3 11.9 142 41-204 29-197 (277)
128 TIGR01504 glyox_carbo_lig glyo 90.1 3.5 7.5E-05 43.6 12.0 114 85-210 43-166 (588)
129 TIGR02720 pyruv_oxi_spxB pyruv 90.0 2.9 6.3E-05 44.0 11.3 113 84-209 39-160 (575)
130 cd02003 TPP_IolD Thiamine pyro 90.0 3.5 7.6E-05 37.2 10.4 36 168-204 145-180 (205)
131 PRK11865 pyruvate ferredoxin o 89.4 10 0.00023 36.5 13.5 34 171-204 174-207 (299)
132 TIGR03394 indol_phenyl_DC indo 89.4 9.3 0.0002 39.9 14.4 114 85-209 40-166 (535)
133 PRK06163 hypothetical protein; 89.1 16 0.00034 33.1 13.9 113 83-205 50-170 (202)
134 PRK08273 thiamine pyrophosphat 88.7 8 0.00017 40.9 13.5 115 84-210 43-166 (597)
135 cd00568 TPP_enzymes Thiamine p 88.6 2.4 5.2E-05 36.4 8.0 111 83-204 36-165 (168)
136 cd02015 TPP_AHAS Thiamine pyro 88.4 5.8 0.00013 35.1 10.5 111 83-204 40-170 (186)
137 PF02775 TPP_enzyme_C: Thiamin 87.9 3.7 8.1E-05 35.0 8.7 110 83-203 18-151 (153)
138 PRK11867 2-oxoglutarate ferred 87.6 12 0.00025 35.9 12.6 143 38-204 27-198 (286)
139 TIGR03393 indolpyr_decarb indo 87.5 12 0.00026 39.0 13.7 114 85-211 41-169 (539)
140 TIGR03254 oxalate_oxc oxalyl-C 87.1 6.4 0.00014 41.1 11.5 147 43-204 371-534 (554)
141 cd03372 TPP_ComE Thiamine pyro 87.1 13 0.00027 32.9 11.8 110 83-205 35-152 (179)
142 cd03371 TPP_PpyrDC Thiamine py 87.0 15 0.00032 32.8 12.2 112 83-205 41-160 (188)
143 cd02002 TPP_BFDC Thiamine pyro 87.0 16 0.00035 31.8 12.4 111 83-204 40-175 (178)
144 PRK11869 2-oxoacid ferredoxin 86.6 9.9 0.00022 36.3 11.4 147 37-204 17-189 (280)
145 PRK07449 2-succinyl-5-enolpyru 86.2 10 0.00022 39.8 12.4 113 85-208 49-174 (568)
146 PLN02573 pyruvate decarboxylas 86.0 16 0.00035 38.5 13.8 112 85-209 56-183 (578)
147 TIGR00173 menD 2-succinyl-5-en 85.4 3.6 7.7E-05 41.7 8.3 114 85-209 40-167 (432)
148 PRK08155 acetolactate synthase 85.1 4.9 0.00011 42.1 9.5 112 83-205 409-540 (564)
149 PRK06457 pyruvate dehydrogenas 85.1 9.4 0.0002 39.9 11.5 111 83-204 386-515 (549)
150 PRK08617 acetolactate synthase 84.9 6.7 0.00015 41.0 10.3 111 81-204 402-532 (552)
151 cd02008 TPP_IOR_alpha Thiamine 84.7 8.7 0.00019 33.7 9.5 98 97-204 57-173 (178)
152 cd02006 TPP_Gcl Thiamine pyrop 83.8 4.8 0.0001 36.2 7.6 111 83-204 47-190 (202)
153 PRK05778 2-oxoglutarate ferred 83.6 21 0.00045 34.5 12.2 143 37-204 27-199 (301)
154 PRK06154 hypothetical protein; 82.9 13 0.00028 39.1 11.4 149 35-209 18-177 (565)
155 cd03028 GRX_PICOT_like Glutare 82.5 3.4 7.4E-05 32.1 5.3 66 238-309 7-81 (90)
156 TIGR03336 IOR_alpha indolepyru 81.6 9.1 0.0002 40.5 9.8 113 83-205 395-527 (595)
157 TIGR00118 acolac_lg acetolacta 81.5 12 0.00025 39.2 10.5 111 83-204 402-532 (558)
158 cd00860 ThrRS_anticodon ThrRS 81.5 8.1 0.00018 29.3 7.1 59 240-300 3-62 (91)
159 cd03027 GRX_DEP Glutaredoxin ( 80.7 4.1 9E-05 30.0 5.0 66 240-308 2-68 (73)
160 PRK06048 acetolactate synthase 80.6 13 0.00028 38.9 10.5 112 83-205 404-535 (561)
161 PRK06546 pyruvate dehydrogenas 80.3 9.5 0.00021 40.2 9.4 109 83-204 398-526 (578)
162 PRK09259 putative oxalyl-CoA d 80.3 14 0.0003 38.8 10.5 147 43-204 378-542 (569)
163 cd02007 TPP_DXS Thiamine pyrop 80.2 16 0.00035 32.8 9.6 98 94-205 78-187 (195)
164 PRK08978 acetolactate synthase 79.9 17 0.00037 37.9 11.1 111 83-204 391-521 (548)
165 COG4231 Indolepyruvate ferredo 79.8 15 0.00033 38.7 10.2 142 39-205 391-551 (640)
166 COG1071 AcoA Pyruvate/2-oxoglu 79.2 7.6 0.00016 38.3 7.6 107 89-205 138-258 (358)
167 cd02012 TPP_TK Thiamine pyroph 78.8 29 0.00063 32.4 11.2 98 95-205 109-224 (255)
168 TIGR03297 Ppyr-DeCO2ase phosph 78.8 72 0.0016 31.6 15.8 112 83-205 214-333 (361)
169 cd01481 vWA_collagen_alpha3-VI 78.4 6.3 0.00014 34.3 6.2 55 241-298 110-164 (165)
170 PRK06276 acetolactate synthase 78.2 13 0.00028 39.2 9.6 112 83-204 409-539 (586)
171 TIGR00365 monothiol glutaredox 78.1 5.4 0.00012 31.5 5.2 71 238-310 11-86 (97)
172 PF03102 NeuB: NeuB family; I 76.8 46 0.001 31.0 11.8 70 241-312 115-191 (241)
173 PRK06466 acetolactate synthase 76.7 31 0.00067 36.2 11.9 111 83-204 413-544 (574)
174 PRK09107 acetolactate synthase 75.9 27 0.00059 36.9 11.3 112 83-205 420-551 (595)
175 COG2089 SpsE Sialic acid synth 75.9 11 0.00025 36.5 7.5 65 241-306 149-220 (347)
176 PLN02980 2-oxoglutarate decarb 75.4 40 0.00087 40.3 13.4 111 85-206 341-465 (1655)
177 COG0075 Serine-pyruvate aminot 74.9 12 0.00027 37.3 7.8 81 233-316 75-160 (383)
178 PF03960 ArsC: ArsC family; I 74.8 4.9 0.00011 32.4 4.2 43 248-291 4-46 (110)
179 PLN02470 acetolactate synthase 74.2 31 0.00067 36.3 11.1 112 83-205 416-554 (585)
180 PRK08527 acetolactate synthase 73.3 23 0.0005 37.1 9.9 111 83-204 404-534 (563)
181 PRK06965 acetolactate synthase 73.2 31 0.00067 36.4 10.8 112 83-205 427-559 (587)
182 PRK06154 hypothetical protein; 73.2 40 0.00086 35.4 11.6 111 83-204 421-551 (565)
183 PRK08266 hypothetical protein; 73.1 23 0.0005 36.9 9.8 111 83-204 392-521 (542)
184 cd00858 GlyRS_anticodon GlyRS 72.2 17 0.00037 29.7 6.9 58 239-300 27-88 (121)
185 COG3961 Pyruvate decarboxylase 71.8 24 0.00053 36.4 9.1 138 55-209 20-171 (557)
186 TIGR01616 nitro_assoc nitrogen 71.8 11 0.00024 31.5 5.7 44 246-290 6-50 (126)
187 PRK07449 2-succinyl-5-enolpyru 70.8 17 0.00037 38.1 8.2 98 96-204 430-545 (568)
188 PF04609 MCR_C: Methyl-coenzym 70.6 44 0.00096 31.4 9.7 90 238-334 70-168 (268)
189 PRK05858 hypothetical protein; 69.9 29 0.00063 36.1 9.7 112 83-205 397-527 (542)
190 cd00859 HisRS_anticodon HisRS 69.6 18 0.0004 26.8 6.2 56 240-298 3-60 (91)
191 PF03358 FMN_red: NADPH-depend 69.6 13 0.00028 31.3 5.9 67 247-314 14-94 (152)
192 PRK10853 putative reductase; P 69.5 11 0.00024 31.0 5.2 43 248-291 8-50 (118)
193 PRK08273 thiamine pyrophosphat 69.5 53 0.0011 34.7 11.6 36 168-204 507-542 (597)
194 TIGR03457 sulphoacet_xsc sulfo 69.0 52 0.0011 34.6 11.4 111 83-204 420-553 (579)
195 cd02005 TPP_PDC_IPDC Thiamine 68.8 46 0.001 29.3 9.4 112 83-204 40-170 (183)
196 TIGR03393 indolpyr_decarb indo 68.7 83 0.0018 32.8 12.7 112 83-205 394-524 (539)
197 PRK07092 benzoylformate decarb 68.4 56 0.0012 33.9 11.4 111 83-204 398-526 (530)
198 PRK06882 acetolactate synthase 68.1 37 0.00081 35.6 10.1 111 83-204 411-542 (574)
199 PRK07710 acetolactate synthase 68.1 44 0.00095 35.1 10.6 112 83-205 414-545 (571)
200 PRK07789 acetolactate synthase 68.1 40 0.00086 35.8 10.3 113 83-205 437-573 (612)
201 cd03035 ArsC_Yffb Arsenate Red 67.9 14 0.00029 29.8 5.3 43 248-291 7-49 (105)
202 PRK05444 1-deoxy-D-xylulose-5- 67.7 33 0.00073 36.2 9.6 99 95-205 121-239 (580)
203 cd03033 ArsC_15kD Arsenate Red 67.6 14 0.00029 30.3 5.3 43 248-291 8-50 (113)
204 COG0680 HyaD Ni,Fe-hydrogenase 67.5 16 0.00035 31.8 6.0 56 239-298 2-64 (160)
205 PRK08322 acetolactate synthase 67.5 28 0.00061 36.2 9.0 113 83-205 396-525 (547)
206 TIGR01504 glyox_carbo_lig glyo 67.5 22 0.00048 37.5 8.3 111 83-204 408-551 (588)
207 PRK06112 acetolactate synthase 67.3 42 0.00091 35.3 10.3 109 85-204 429-556 (578)
208 cd06062 H2MP_MemB-H2up Endopep 67.3 21 0.00045 30.3 6.7 54 241-298 1-61 (146)
209 PRK07524 hypothetical protein; 67.1 55 0.0012 34.0 11.1 111 83-204 396-525 (535)
210 PRK08979 acetolactate synthase 66.7 65 0.0014 33.9 11.5 111 83-204 411-542 (572)
211 TIGR02189 GlrX-like_plant Glut 66.6 36 0.00079 26.8 7.5 66 239-308 8-78 (99)
212 PF03129 HGTP_anticodon: Antic 66.4 18 0.00038 27.8 5.6 57 240-299 1-62 (94)
213 cd01080 NAD_bind_m-THF_DH_Cycl 66.2 17 0.00038 31.8 6.0 51 237-295 43-93 (168)
214 COG1393 ArsC Arsenate reductas 66.2 22 0.00048 29.3 6.3 42 249-291 10-51 (117)
215 PRK10026 arsenate reductase; P 66.0 18 0.0004 30.8 5.9 43 248-291 10-52 (141)
216 TIGR03569 NeuB_NnaB N-acetylne 65.9 1E+02 0.0022 30.2 11.9 68 241-310 135-211 (329)
217 PRK11269 glyoxylate carboligas 65.8 48 0.001 34.9 10.4 111 83-204 409-552 (591)
218 cd06063 H2MP_Cyano-H2up This g 65.8 20 0.00044 30.5 6.3 55 241-299 1-61 (146)
219 PRK05899 transketolase; Review 65.4 39 0.00084 36.0 9.6 38 167-205 206-245 (624)
220 TIGR02720 pyruv_oxi_spxB pyruv 65.3 57 0.0012 34.3 10.8 111 83-204 398-528 (575)
221 cd03034 ArsC_ArsC Arsenate Red 65.2 15 0.00031 29.9 5.0 43 248-291 7-49 (112)
222 PRK08199 thiamine pyrophosphat 65.1 47 0.001 34.7 10.1 112 83-205 406-535 (557)
223 PRK07586 hypothetical protein; 64.9 61 0.0013 33.4 10.8 110 83-203 376-510 (514)
224 PRK03767 NAD(P)H:quinone oxido 64.2 61 0.0013 28.9 9.4 68 246-316 12-95 (200)
225 COG0426 FpaA Uncharacterized f 64.0 71 0.0015 32.0 10.4 71 240-314 248-321 (388)
226 TIGR00014 arsC arsenate reduct 63.6 15 0.00032 30.0 4.8 43 248-291 7-49 (114)
227 cd00861 ProRS_anticodon_short 63.1 36 0.00078 25.9 6.8 58 240-300 3-65 (94)
228 PRK07979 acetolactate synthase 61.6 92 0.002 32.7 11.5 111 83-204 411-544 (574)
229 KOG2862 Alanine-glyoxylate ami 60.5 47 0.001 32.4 8.1 76 234-313 88-165 (385)
230 cd00518 H2MP Hydrogenase speci 59.5 31 0.00067 28.9 6.3 53 243-299 2-60 (139)
231 PRK07064 hypothetical protein; 59.3 32 0.0007 35.7 7.6 113 83-205 396-525 (544)
232 PRK10466 hybD hydrogenase 2 ma 59.3 43 0.00094 29.1 7.3 56 240-299 2-64 (164)
233 cd00738 HGTP_anticodon HGTP an 59.0 40 0.00086 25.4 6.4 57 240-299 3-64 (94)
234 PRK09124 pyruvate dehydrogenas 58.5 57 0.0012 34.2 9.3 112 83-205 398-527 (574)
235 PRK10264 hydrogenase 1 maturat 58.0 45 0.00097 30.0 7.3 56 239-298 4-66 (195)
236 PRK12315 1-deoxy-D-xylulose-5- 57.9 95 0.0021 32.9 10.8 109 86-205 109-240 (581)
237 COG0655 WrbA Multimeric flavod 57.8 55 0.0012 29.4 8.0 69 246-315 13-100 (207)
238 PRK12474 hypothetical protein; 57.6 82 0.0018 32.6 10.2 112 83-204 380-515 (518)
239 TIGR02190 GlrX-dom Glutaredoxi 56.6 55 0.0012 24.4 6.6 71 238-313 7-78 (79)
240 TIGR00072 hydrog_prot hydrogen 56.5 41 0.00088 28.5 6.5 54 242-299 1-61 (145)
241 TIGR02418 acolac_catab acetola 56.1 62 0.0013 33.6 9.1 112 82-204 397-526 (539)
242 PRK06756 flavodoxin; Provision 55.9 78 0.0017 26.5 8.2 81 246-332 12-93 (148)
243 PLN02790 transketolase 55.9 68 0.0015 34.5 9.5 74 122-205 153-235 (654)
244 PRK08611 pyruvate oxidase; Pro 55.7 70 0.0015 33.7 9.4 112 83-205 398-527 (576)
245 PRK06456 acetolactate synthase 55.6 65 0.0014 33.7 9.2 111 83-204 411-541 (572)
246 PRK06725 acetolactate synthase 55.6 46 0.00099 35.0 8.0 112 83-205 412-542 (570)
247 PF00258 Flavodoxin_1: Flavodo 55.1 23 0.00051 29.4 4.8 48 246-298 7-54 (143)
248 PF04430 DUF498: Protein of un 55.0 7.6 0.00016 31.5 1.6 38 237-274 52-90 (110)
249 COG2241 CobL Precorrin-6B meth 55.0 78 0.0017 28.9 8.3 72 239-319 95-166 (210)
250 KOG1184 Thiamine pyrophosphate 54.7 78 0.0017 32.8 9.0 146 43-208 6-170 (561)
251 cd06070 H2MP_like-2 Putative [ 54.6 38 0.00082 28.5 6.0 52 242-299 1-56 (140)
252 PRK10824 glutaredoxin-4; Provi 54.4 53 0.0012 26.9 6.6 66 238-309 14-88 (115)
253 TIGR02690 resist_ArsH arsenica 54.4 70 0.0015 29.4 8.1 63 250-313 43-113 (219)
254 cd03418 GRX_GRXb_1_3_like Glut 53.9 31 0.00068 25.0 4.8 59 248-308 8-68 (75)
255 cd02977 ArsC_family Arsenate R 53.8 37 0.00079 26.9 5.5 43 248-291 7-49 (105)
256 cd03029 GRX_hybridPRX5 Glutare 53.7 71 0.0015 23.0 6.7 68 241-313 3-71 (72)
257 PRK13344 spxA transcriptional 53.6 38 0.00082 28.4 5.7 43 248-291 8-50 (132)
258 TIGR02181 GRX_bact Glutaredoxi 53.3 26 0.00057 25.8 4.3 60 248-309 7-67 (79)
259 cd00248 Mth938-like Mth938-lik 52.9 9.5 0.00021 30.9 1.9 35 239-273 53-88 (109)
260 cd05125 Mth938_2P1-like Mth938 52.6 11 0.00023 31.0 2.1 39 236-274 52-91 (114)
261 TIGR03181 PDH_E1_alph_x pyruva 52.6 53 0.0012 32.2 7.4 63 141-205 170-243 (341)
262 PRK07418 acetolactate synthase 52.6 95 0.0021 33.0 9.9 111 83-204 424-555 (616)
263 CHL00099 ilvB acetohydroxyacid 52.3 1.1E+02 0.0025 32.1 10.4 112 83-205 420-552 (585)
264 cd03412 CbiK_N Anaerobic cobal 52.0 1.4E+02 0.0029 24.7 9.5 74 241-315 3-95 (127)
265 cd06068 H2MP_like-1 Putative [ 51.7 46 0.001 28.1 6.1 54 243-299 2-61 (144)
266 PF14097 SpoVAE: Stage V sporu 51.3 1.7E+02 0.0038 25.8 9.7 74 240-316 1-80 (180)
267 PF07905 PucR: Purine cataboli 50.8 73 0.0016 26.1 7.0 63 241-304 44-113 (123)
268 cd03032 ArsC_Spx Arsenate Redu 50.3 43 0.00094 27.1 5.5 42 248-290 8-49 (115)
269 PRK11200 grxA glutaredoxin 1; 50.2 68 0.0015 24.1 6.3 65 248-315 9-81 (85)
270 TIGR02194 GlrX_NrdH Glutaredox 50.1 31 0.00066 25.2 4.2 58 248-307 7-65 (72)
271 PRK12559 transcriptional regul 49.3 54 0.0012 27.4 6.0 42 248-290 8-49 (131)
272 cd03036 ArsC_like Arsenate Red 49.2 31 0.00067 27.8 4.4 43 248-291 7-49 (111)
273 PTZ00089 transketolase; Provis 49.2 1.7E+02 0.0037 31.5 11.2 73 122-205 164-246 (661)
274 PF01565 FAD_binding_4: FAD bi 49.0 27 0.00058 28.9 4.1 76 177-257 3-81 (139)
275 PRK08762 molybdopterin biosynt 48.7 1.2E+02 0.0025 30.1 9.3 24 291-318 136-159 (376)
276 PRK11544 hycI hydrogenase 3 ma 48.7 45 0.00097 28.7 5.6 55 240-298 2-63 (156)
277 PRK07525 sulfoacetaldehyde ace 47.7 1.4E+02 0.003 31.5 10.2 111 83-204 425-558 (588)
278 PRK07308 flavodoxin; Validated 47.5 1.7E+02 0.0036 24.5 9.1 81 246-333 12-93 (146)
279 TIGR01617 arsC_related transcr 47.3 38 0.00083 27.5 4.7 44 247-291 6-49 (117)
280 PLN02409 serine--glyoxylate am 46.9 62 0.0013 32.2 7.1 50 236-288 82-131 (401)
281 TIGR00130 frhD coenzyme F420-r 46.8 44 0.00094 28.6 5.2 60 239-299 3-70 (153)
282 cd01474 vWA_ATR ATR (Anthrax T 46.0 26 0.00056 30.7 3.8 42 253-297 123-164 (185)
283 cd05560 Xcc1710_like Xcc1710_l 45.7 17 0.00036 29.5 2.3 36 238-273 52-88 (109)
284 TIGR00142 hycI hydrogenase mat 45.3 51 0.0011 28.0 5.3 55 242-298 2-62 (146)
285 smart00226 LMWPc Low molecular 45.0 1.3E+02 0.0028 24.9 7.8 39 254-300 44-82 (140)
286 PRK06703 flavodoxin; Provision 44.9 73 0.0016 26.8 6.3 80 247-333 13-93 (151)
287 COG0028 IlvB Thiamine pyrophos 44.5 81 0.0017 33.2 7.7 112 82-204 397-527 (550)
288 PRK10638 glutaredoxin 3; Provi 44.0 54 0.0012 24.6 4.8 64 241-307 4-68 (83)
289 PLN02573 pyruvate decarboxylas 43.8 1.6E+02 0.0034 31.1 9.8 112 83-204 418-548 (578)
290 PRK09004 FMN-binding protein M 43.7 1.9E+02 0.0042 24.4 8.7 82 243-333 5-93 (146)
291 PRK06372 translation initiatio 43.1 2.4E+02 0.0052 26.6 9.8 83 241-335 111-198 (253)
292 PRK08327 acetolactate synthase 42.9 56 0.0012 34.3 6.3 112 83-204 420-563 (569)
293 PRK10569 NAD(P)H-dependent FMN 42.9 99 0.0021 27.6 7.0 62 251-313 18-89 (191)
294 PF10740 DUF2529: Protein of u 41.9 1.1E+02 0.0025 26.9 6.9 88 184-271 24-115 (172)
295 PRK08105 flavodoxin; Provision 41.1 97 0.0021 26.4 6.5 84 243-333 5-95 (149)
296 PF03853 YjeF_N: YjeF-related 40.4 1E+02 0.0022 26.8 6.6 51 241-291 29-81 (169)
297 PF00676 E1_dh: Dehydrogenase 39.6 73 0.0016 30.6 6.1 99 97-205 107-222 (300)
298 PRK01655 spxA transcriptional 39.5 67 0.0015 26.8 5.1 43 247-290 7-49 (131)
299 CHL00201 syh histidine-tRNA sy 39.2 90 0.002 31.6 6.9 57 239-298 326-384 (430)
300 KOG1185 Thiamine pyrophosphate 39.1 4.7E+02 0.01 27.2 15.0 118 79-208 48-173 (571)
301 cd01491 Ube1_repeat1 Ubiquitin 39.0 91 0.002 29.9 6.5 67 273-352 4-70 (286)
302 cd01452 VWA_26S_proteasome_sub 38.1 1.4E+02 0.003 26.7 7.2 59 241-300 111-176 (187)
303 COG0695 GrxC Glutaredoxin and 37.7 92 0.002 23.5 5.2 62 241-304 3-66 (80)
304 TIGR03586 PseI pseudaminic aci 37.3 2E+02 0.0043 28.1 8.7 70 240-311 135-211 (327)
305 cd01482 vWA_collagen_alphaI-XI 37.2 94 0.002 26.4 5.9 54 241-297 107-162 (164)
306 PHA03050 glutaredoxin; Provisi 37.0 2E+02 0.0043 23.1 7.3 69 239-310 13-88 (108)
307 TIGR03567 FMN_reduc_SsuE FMN r 36.8 1.5E+02 0.0032 25.6 7.1 65 249-314 15-89 (171)
308 PRK05568 flavodoxin; Provision 36.7 85 0.0018 25.9 5.4 43 247-296 13-55 (142)
309 cd00006 PTS_IIA_man PTS_IIA, P 36.5 2.3E+02 0.005 22.9 9.6 112 240-358 2-118 (122)
310 KOG0225 Pyruvate dehydrogenase 36.3 1.8E+02 0.004 28.6 7.9 99 97-206 173-285 (394)
311 TIGR00612 ispG_gcpE 1-hydroxy- 36.1 3.3E+02 0.007 26.9 9.7 110 237-361 46-158 (346)
312 PF02662 FlpD: Methyl-viologen 35.9 2.5E+02 0.0054 23.2 8.6 58 241-298 2-61 (124)
313 CHL00149 odpA pyruvate dehydro 35.8 1.7E+02 0.0037 28.7 8.1 64 141-205 183-256 (341)
314 PRK00676 hemA glutamyl-tRNA re 35.2 79 0.0017 31.1 5.5 56 237-295 173-232 (338)
315 PRK09739 hypothetical protein; 35.1 1.4E+02 0.0031 26.4 6.9 64 250-314 20-103 (199)
316 PRK05569 flavodoxin; Provision 34.9 95 0.0021 25.6 5.4 44 246-296 12-55 (141)
317 KOG1185 Thiamine pyrophosphate 34.6 3.6E+02 0.0079 28.0 10.0 112 79-203 416-555 (571)
318 PRK07282 acetolactate synthase 34.4 2.2E+02 0.0048 29.8 9.1 110 83-204 408-537 (566)
319 PF12500 TRSP: TRSP domain C t 34.4 68 0.0015 27.9 4.4 33 237-269 56-88 (155)
320 KOG0572 Glutamine phosphoribos 34.2 1.6E+02 0.0035 29.5 7.3 62 290-356 356-426 (474)
321 PRK08114 cystathionine beta-ly 34.1 97 0.0021 31.1 6.1 35 259-298 121-155 (395)
322 PTZ00062 glutaredoxin; Provisi 33.9 1.5E+02 0.0032 26.9 6.7 65 238-308 112-185 (204)
323 TIGR01755 flav_wrbA NAD(P)H:qu 33.6 2.4E+02 0.0051 25.1 8.0 67 246-315 11-93 (197)
324 PRK00037 hisS histidyl-tRNA sy 33.4 1.2E+02 0.0026 30.2 6.7 57 239-298 319-377 (412)
325 cd05569 PTS_IIB_fructose PTS_I 33.4 2.3E+02 0.0051 22.1 7.2 56 241-300 2-64 (96)
326 COG4635 HemG Flavodoxin [Energ 33.3 1.4E+02 0.0029 26.3 6.0 62 247-316 12-73 (175)
327 PRK08535 translation initiatio 33.3 3.2E+02 0.0069 26.4 9.4 75 243-329 150-229 (310)
328 TIGR01753 flav_short flavodoxi 33.3 1.7E+02 0.0037 23.7 6.7 44 247-297 10-53 (140)
329 PF07931 CPT: Chloramphenicol 33.2 2.9E+02 0.0062 24.3 8.3 38 56-96 2-39 (174)
330 cd01475 vWA_Matrilin VWA_Matri 33.1 1E+02 0.0022 27.9 5.7 55 241-298 112-168 (224)
331 PRK11104 hemG protoporphyrinog 33.1 2.8E+02 0.0061 24.2 8.3 61 247-316 12-72 (177)
332 COG1104 NifS Cysteine sulfinat 32.8 93 0.002 31.1 5.6 75 243-317 94-171 (386)
333 PLN02980 2-oxoglutarate decarb 32.8 2E+02 0.0043 34.7 9.2 30 175-204 856-885 (1655)
334 PF00731 AIRC: AIR carboxylase 32.7 2.9E+02 0.0063 23.8 8.0 69 240-311 2-75 (150)
335 PRK12753 transketolase; Review 32.6 3.4E+02 0.0073 29.3 10.2 63 142-205 173-243 (663)
336 cd03799 GT1_amsK_like This is 32.2 4.2E+02 0.0091 24.6 11.1 79 274-363 240-328 (355)
337 cd06064 H2MP_F420-Reduc Endope 32.2 65 0.0014 27.4 4.0 32 243-274 2-40 (150)
338 TIGR02853 spore_dpaA dipicolin 32.0 1.3E+02 0.0027 28.8 6.3 55 237-294 150-214 (287)
339 cd03798 GT1_wlbH_like This fam 31.9 4E+02 0.0087 24.3 11.6 78 274-364 263-346 (377)
340 cd01472 vWA_collagen von Wille 31.9 1.2E+02 0.0025 25.7 5.6 54 241-297 107-162 (164)
341 cd02000 TPP_E1_PDC_ADC_BCADC T 31.5 1.9E+02 0.0042 27.4 7.5 63 141-205 152-225 (293)
342 KOG4166 Thiamine pyrophosphate 31.4 2.9E+02 0.0064 28.2 8.7 109 89-208 134-251 (675)
343 TIGR00442 hisS histidyl-tRNA s 31.2 1.3E+02 0.0028 29.8 6.5 57 239-298 323-381 (397)
344 cd06067 H2MP_MemB-H2evol Endop 31.0 1.8E+02 0.0038 24.3 6.4 52 243-298 2-60 (136)
345 cd05212 NAD_bind_m-THF_DH_Cycl 30.8 1.2E+02 0.0025 25.8 5.2 52 237-296 27-78 (140)
346 cd03795 GT1_like_4 This family 30.7 4.2E+02 0.0091 24.6 9.8 110 238-364 218-334 (357)
347 PRK08306 dipicolinate synthase 30.3 1.3E+02 0.0029 28.7 6.2 55 237-294 151-215 (296)
348 PRK11761 cysM cysteine synthas 30.2 3.8E+02 0.0082 25.5 9.3 160 173-364 61-251 (296)
349 PRK00170 azoreductase; Reviewe 30.1 2.3E+02 0.005 24.8 7.4 64 250-314 19-110 (201)
350 PRK13018 cell division protein 29.8 1.8E+02 0.0039 29.1 7.1 61 237-300 111-185 (378)
351 PF00289 CPSase_L_chain: Carba 29.6 2.3E+02 0.0049 22.9 6.6 49 240-297 4-52 (110)
352 COG1908 FrhD Coenzyme F420-red 29.4 3.4E+02 0.0073 22.7 8.5 42 264-305 27-74 (132)
353 TIGR01754 flav_RNR ribonucleot 29.2 2.5E+02 0.0054 23.2 7.0 80 247-333 12-92 (140)
354 cd05126 Mth938 Mth938 domain. 29.2 34 0.00074 28.1 1.6 37 235-271 55-93 (117)
355 COG1504 Uncharacterized conser 29.1 66 0.0014 26.3 3.2 38 235-274 58-97 (121)
356 PLN02269 Pyruvate dehydrogenas 28.8 3E+02 0.0064 27.3 8.4 62 141-205 186-256 (362)
357 PF00462 Glutaredoxin: Glutare 28.3 1E+02 0.0022 21.2 3.9 28 248-275 7-34 (60)
358 TIGR03566 FMN_reduc_MsuE FMN r 27.9 2.4E+02 0.0051 24.4 6.9 64 250-314 16-92 (174)
359 TIGR03249 KdgD 5-dehydro-4-deo 27.8 1.3E+02 0.0029 28.6 5.7 43 242-284 77-119 (296)
360 cd03414 CbiX_SirB_C Sirohydroc 27.7 3.1E+02 0.0067 21.7 8.6 76 240-315 2-84 (117)
361 TIGR00232 tktlase_bact transke 27.5 4.5E+02 0.0098 28.3 10.1 38 167-205 198-239 (653)
362 COG0062 Uncharacterized conser 27.5 1.6E+02 0.0035 26.7 5.8 46 241-286 53-98 (203)
363 PRK14012 cysteine desulfurase; 26.7 3.2E+02 0.0069 26.9 8.5 25 276-300 159-183 (404)
364 cd00115 LMWPc Substituted upda 26.7 3.7E+02 0.0079 22.2 8.0 40 254-300 48-87 (141)
365 PF02441 Flavoprotein: Flavopr 26.6 77 0.0017 26.1 3.4 35 240-274 2-37 (129)
366 PRK10329 glutaredoxin-like pro 26.4 2.8E+02 0.0061 20.8 7.5 61 241-307 3-66 (81)
367 PLN02374 pyruvate dehydrogenas 26.3 1.9E+02 0.0041 29.5 6.7 64 141-205 249-322 (433)
368 cd01492 Aos1_SUMO Ubiquitin ac 25.9 1.2E+02 0.0026 27.1 4.8 40 273-318 6-45 (197)
369 cd01521 RHOD_PspE2 Member of t 25.8 83 0.0018 24.8 3.3 35 236-270 62-96 (110)
370 TIGR01752 flav_long flavodoxin 25.8 4.3E+02 0.0092 22.6 10.6 84 243-333 3-89 (167)
371 TIGR00511 ribulose_e2b2 ribose 25.7 4E+02 0.0088 25.6 8.6 70 248-329 150-224 (301)
372 PRK10307 putative glycosyl tra 25.5 4.2E+02 0.0092 25.9 9.1 107 239-362 260-373 (412)
373 cd06198 FNR_like_3 NAD(P) bind 25.5 4.7E+02 0.01 23.0 8.9 52 238-289 95-150 (216)
374 COG0543 UbiB 2-polyprenylpheno 25.4 3.5E+02 0.0075 25.1 7.9 71 229-300 97-172 (252)
375 PRK02948 cysteine desulfurase; 25.3 2.6E+02 0.0057 27.1 7.5 26 278-303 155-180 (381)
376 COG0373 HemA Glutamyl-tRNA red 25.3 2.4E+02 0.0052 28.6 7.1 121 237-367 177-312 (414)
377 cd03416 CbiX_SirB_N Sirohydroc 25.2 3.2E+02 0.0069 21.0 7.0 74 241-314 2-83 (101)
378 PF14258 DUF4350: Domain of un 25.2 2.1E+02 0.0045 20.6 5.2 36 256-300 10-45 (70)
379 PLN02530 histidine-tRNA ligase 25.2 1.7E+02 0.0037 30.1 6.3 57 239-298 402-460 (487)
380 PRK10537 voltage-gated potassi 25.0 2E+02 0.0044 28.8 6.6 56 238-296 240-309 (393)
381 cd05009 SIS_GlmS_GlmD_2 SIS (S 25.0 3.4E+02 0.0075 22.2 7.3 57 237-297 12-69 (153)
382 PLN02463 lycopene beta cyclase 25.0 82 0.0018 32.1 3.8 37 239-278 29-65 (447)
383 cd00862 ProRS_anticodon_zinc P 24.8 2.9E+02 0.0062 24.8 7.0 58 240-298 12-76 (202)
384 KOG1017 Predicted uracil phosp 24.8 1.6E+02 0.0035 26.8 5.1 55 242-300 197-253 (267)
385 TIGR02006 IscS cysteine desulf 24.7 2.7E+02 0.0059 27.5 7.5 28 278-305 159-186 (402)
386 cd02066 GRX_family Glutaredoxi 24.7 2.4E+02 0.0051 19.3 5.9 58 248-307 8-66 (72)
387 TIGR02326 transamin_PhnW 2-ami 24.7 3E+02 0.0066 26.5 7.7 27 278-304 146-172 (363)
388 PRK04148 hypothetical protein; 24.6 3.5E+02 0.0075 22.8 6.9 32 238-273 17-48 (134)
389 PRK14175 bifunctional 5,10-met 24.6 1.9E+02 0.0042 27.7 6.0 51 237-295 157-207 (286)
390 PF00456 Transketolase_N: Tran 24.5 5.1E+02 0.011 25.3 9.1 39 167-206 199-241 (332)
391 cd05565 PTS_IIB_lactose PTS_II 24.3 3.5E+02 0.0075 21.5 6.6 37 253-295 17-53 (99)
392 COG1184 GCD2 Translation initi 24.3 4.4E+02 0.0094 25.5 8.3 77 242-330 148-229 (301)
393 PF02254 TrkA_N: TrkA-N domain 24.3 1.2E+02 0.0026 23.9 4.0 30 241-273 1-30 (116)
394 COG0541 Ffh Signal recognition 24.2 4.6E+02 0.01 26.8 8.8 111 248-361 166-311 (451)
395 cd03801 GT1_YqgM_like This fam 24.1 3.9E+02 0.0085 24.3 8.2 75 275-362 261-341 (374)
396 PF08859 DGC: DGC domain; Int 24.0 3.1E+02 0.0067 22.1 6.4 51 248-300 11-61 (110)
397 COG0124 HisS Histidyl-tRNA syn 23.8 1.1E+02 0.0024 31.1 4.5 60 237-299 334-395 (429)
398 PF00070 Pyr_redox: Pyridine n 23.7 1.3E+02 0.0027 22.2 3.8 47 241-290 2-53 (80)
399 PF12328 Rpp20: Rpp20 subunit 23.7 1.5E+02 0.0032 25.4 4.6 32 238-269 61-93 (144)
400 cd00640 Trp-synth-beta_II Tryp 23.6 5.5E+02 0.012 23.2 9.9 33 174-206 49-81 (244)
401 cd01473 vWA_CTRP CTRP for CS 23.6 2.7E+02 0.0059 24.6 6.6 45 241-288 112-160 (192)
402 PRK13403 ketol-acid reductoiso 23.5 2.6E+02 0.0056 27.5 6.7 53 238-294 16-76 (335)
403 cd03031 GRX_GRX_like Glutaredo 23.5 2.3E+02 0.005 24.2 5.8 57 249-307 15-76 (147)
404 PRK12444 threonyl-tRNA synthet 23.3 2.1E+02 0.0045 30.6 6.7 17 347-363 622-638 (639)
405 COG1171 IlvA Threonine dehydra 23.3 3.8E+02 0.0082 26.5 7.9 112 243-368 123-283 (347)
406 cd01480 vWA_collagen_alpha_1-V 23.1 1.8E+02 0.0039 25.3 5.3 54 241-297 113-170 (186)
407 PRK03092 ribose-phosphate pyro 23.0 6.6E+02 0.014 24.1 9.5 63 238-300 36-117 (304)
408 PRK03359 putative electron tra 23.0 5E+02 0.011 24.4 8.4 12 252-263 40-51 (256)
409 cd03794 GT1_wbuB_like This fam 23.0 6E+02 0.013 23.4 9.6 80 272-362 277-365 (394)
410 PF07991 IlvN: Acetohydroxy ac 22.9 98 0.0021 27.2 3.4 34 237-273 3-36 (165)
411 PF11823 DUF3343: Protein of u 22.8 1E+02 0.0022 22.7 3.1 55 248-317 9-63 (73)
412 TIGR00418 thrS threonyl-tRNA s 22.6 2.3E+02 0.0049 29.7 6.8 11 347-357 550-560 (563)
413 PF00975 Thioesterase: Thioest 22.6 1.4E+02 0.003 26.4 4.6 29 240-268 67-95 (229)
414 cd01453 vWA_transcription_fact 22.6 2.3E+02 0.005 24.8 5.9 42 253-298 125-167 (183)
415 cd05844 GT1_like_7 Glycosyltra 22.4 6.3E+02 0.014 23.7 9.5 107 239-362 220-336 (367)
416 PRK15427 colanic acid biosynth 22.3 2.9E+02 0.0063 27.4 7.2 105 240-361 255-369 (406)
417 TIGR01316 gltA glutamate synth 22.2 1.2E+02 0.0025 30.9 4.3 34 237-273 132-165 (449)
418 TIGR03235 DNA_S_dndA cysteine 22.1 3E+02 0.0066 26.4 7.1 26 278-303 155-180 (353)
419 PRK12770 putative glutamate sy 22.0 1.2E+02 0.0026 29.4 4.3 34 237-273 17-50 (352)
420 PRK14194 bifunctional 5,10-met 22.0 1.7E+02 0.0038 28.2 5.2 52 237-296 158-209 (301)
421 PRK08639 threonine dehydratase 21.8 7.2E+02 0.016 24.9 10.0 113 176-316 74-203 (420)
422 PRK12305 thrS threonyl-tRNA sy 21.8 2.6E+02 0.0056 29.3 7.0 18 347-364 556-573 (575)
423 PRK09754 phenylpropionate diox 21.6 1.6E+02 0.0035 29.0 5.2 34 237-273 143-176 (396)
424 PRK04930 glutathione-regulated 21.6 3.7E+02 0.0079 23.9 6.9 60 253-313 22-84 (184)
425 PRK10310 PTS system galactitol 21.6 1.8E+02 0.0039 22.6 4.4 17 345-361 77-93 (94)
426 PRK15473 cbiF cobalt-precorrin 21.6 1.2E+02 0.0027 28.2 4.1 34 281-318 155-188 (257)
427 cd06066 H2MP_NAD-link-bidir En 21.6 2.6E+02 0.0056 23.3 5.7 42 253-298 16-58 (139)
428 TIGR03394 indol_phenyl_DC indo 21.5 5.1E+02 0.011 26.9 9.0 143 43-204 361-517 (535)
429 COG4981 Enoyl reductase domain 21.4 1.7E+02 0.0038 30.7 5.2 54 142-198 175-241 (717)
430 cd01451 vWA_Magnesium_chelatas 21.3 2.8E+02 0.0061 23.9 6.1 46 254-300 122-168 (178)
431 PRK12483 threonine dehydratase 21.2 6E+02 0.013 26.6 9.3 109 178-315 88-209 (521)
432 PLN02275 transferase, transfer 21.1 7.6E+02 0.016 23.9 10.0 106 238-360 261-371 (371)
433 cd05013 SIS_RpiR RpiR-like pro 21.1 3.1E+02 0.0067 21.7 6.1 33 238-270 13-45 (139)
434 cd01465 vWA_subgroup VWA subgr 21.0 4.3E+02 0.0094 21.9 7.2 46 251-298 116-162 (170)
435 PLN02972 Histidyl-tRNA synthet 21.0 2.8E+02 0.006 30.5 7.0 55 239-298 669-726 (763)
436 PLN02863 UDP-glucoronosyl/UDP- 20.9 9.1E+02 0.02 24.8 10.6 30 238-267 282-315 (477)
437 TIGR02026 BchE magnesium-proto 20.8 5.2E+02 0.011 26.6 8.8 70 257-331 29-100 (497)
438 COG2805 PilT Tfp pilus assembl 20.8 84 0.0018 30.6 2.7 22 41-62 185-206 (353)
439 PRK00366 ispG 4-hydroxy-3-meth 20.8 8.4E+02 0.018 24.2 9.8 111 237-361 54-167 (360)
440 PRK07199 phosphoribosylpyropho 20.7 6.8E+02 0.015 24.0 9.1 63 238-300 49-128 (301)
441 TIGR00140 hupD hydrogenase exp 20.6 2.5E+02 0.0054 23.1 5.4 39 256-298 3-44 (134)
442 TIGR01292 TRX_reduct thioredox 20.5 1.4E+02 0.003 27.7 4.2 30 240-272 2-31 (300)
443 COG1010 CobJ Precorrin-3B meth 20.5 1.5E+02 0.0033 27.6 4.2 12 236-247 70-81 (249)
444 cd03415 CbiX_CbiC Archaeal sir 20.4 4.5E+02 0.0098 21.7 6.8 76 240-315 2-84 (125)
445 PF09383 NIL: NIL domain; Int 20.4 1.8E+02 0.0039 21.4 4.0 23 247-270 54-76 (76)
446 TIGR00204 dxs 1-deoxy-D-xylulo 20.3 5.1E+02 0.011 27.6 8.8 35 170-205 234-271 (617)
447 cd03041 GST_N_2GST_N GST_N fam 20.3 2.8E+02 0.0061 20.1 5.1 61 251-315 11-75 (77)
448 COG2179 Predicted hydrolase of 20.3 3.4E+02 0.0073 24.0 6.1 23 258-280 21-44 (175)
449 TIGR02113 coaC_strep phosphopa 20.2 1.8E+02 0.004 25.6 4.7 32 240-271 2-34 (177)
450 PRK13984 putative oxidoreducta 20.1 1.2E+02 0.0027 31.9 4.2 34 236-272 281-314 (604)
451 PRK13030 2-oxoacid ferredoxin 20.1 2.2E+02 0.0048 32.8 6.2 113 84-205 461-600 (1159)
452 cd01450 vWFA_subfamily_ECM Von 20.0 1.6E+02 0.0034 24.2 4.1 47 241-290 107-155 (161)
453 TIGR03402 FeS_nifS cysteine de 20.0 3.3E+02 0.0072 26.4 7.0 28 276-303 151-178 (379)
No 1
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=2.4e-75 Score=569.55 Aligned_cols=351 Identities=89% Similarity=1.337 Sum_probs=319.8
Q ss_pred cccccCCCCcCC-cccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHH
Q 017513 16 PVARIRPVVSNL-RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEA 94 (370)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~ 94 (370)
..+|.||..-.- |.|....+++++|++|+++|.+++++|++++++++|++.++|+++.+++|+++|+|+||||+||+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq 84 (356)
T PLN02683 5 LLRRTRPAAAAAARGYASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEA 84 (356)
T ss_pred hccCccccccccCcccCccccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHH
Confidence 346677776444 8898878889999999999999999999999999999988888888889999998999999999999
Q ss_pred HHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCC
Q 017513 95 GFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVP 174 (370)
Q Consensus 95 ~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP 174 (370)
||+++|+|||++|+|||+++++++|++|+||||+|++|+++||++|+.++||++++++|...+.|+||++.++++||++|
T Consensus 85 ~~vg~AaGlA~~G~~P~v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~~~a~lr~iP 164 (356)
T PLN02683 85 GFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCFAAWYSSVP 164 (356)
T ss_pred HHHHHHHHHHHCCCEEEEEEehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccCHHHHHhcCC
Confidence 99999999999999999999888999999999999999999999999999999999777766679999888899999999
Q ss_pred CcEEEeeCCHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHH
Q 017513 175 GLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSL 254 (370)
Q Consensus 175 ~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al 254 (370)
||+|++|+|+.|++.++++++++++|+|||+++.++++..+......++++.+++|+++++++|+|++||++|+++..|+
T Consensus 165 nl~V~~Pad~~e~~~~l~~a~~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~G~~v~~Al 244 (356)
T PLN02683 165 GLKVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAFSKMVGYAL 244 (356)
T ss_pred CCEEEEeCCHHHHHHHHHHHHhCCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEccHHHHHHH
Confidence 99999999999999999999999999999988777664332222222234677899999999999999999999999999
Q ss_pred HHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCC
Q 017513 255 KAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVP 334 (370)
Q Consensus 255 ~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~ 334 (370)
+|++.|+++||+++|||++||+|||.++|.++++++++|+|+|||+..||||++|++.+.+++|+.++.|+.++|++|.+
T Consensus 245 ~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~ 324 (356)
T PLN02683 245 KAAEILAKEGISAEVINLRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVP 324 (356)
T ss_pred HHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999998876567899999999999
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHhccccc
Q 017513 335 MPYAANLERMAVPQVEDIVRAAKRACYRSVPM 366 (370)
Q Consensus 335 ~~~~~~l~~~~gl~~~~I~~~i~~~l~~~~~~ 366 (370)
+|+...|++.+.+++++|++++++++.++.+|
T Consensus 325 ~p~~~~le~~~~p~~~~i~~a~~~~~~~~~~~ 356 (356)
T PLN02683 325 MPYAANLERLALPQVEDIVRAAKRACYRSVPM 356 (356)
T ss_pred CCccHHHHHhhCCCHHHHHHHHHHHHHhhcCC
Confidence 98888888888889999999999999988876
No 2
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=1.3e-74 Score=559.24 Aligned_cols=324 Identities=43% Similarity=0.760 Sum_probs=300.4
Q ss_pred cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCC-cEeechhhHHHHHHHHHHHhccCCeeEEEc
Q 017513 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-RVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (370)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~-r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t 114 (370)
++++|++|+++|.+++++||+++++++|++..+|+++.+++|+++| |+ ||||+||+||||+++|+|||++|+|||+++
T Consensus 3 ~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~f-p~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~ 81 (327)
T CHL00144 3 EVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKY-GDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEG 81 (327)
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHC-CCccEeeccccHHHHHHHHHHHHHCCCEEEEEe
Confidence 4689999999999999999999999999987778788889999999 88 999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 017513 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA 194 (370)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a 194 (370)
++++|++|+||||+|++|+++||+||+.++||+++.+++..+++|+||||..+++|+++|||+|++|+|+.|++.+++++
T Consensus 82 ~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~~~ea~~~~iPgl~V~~Psd~~d~~~~l~~a 161 (327)
T CHL00144 82 MNMGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQIVACSTPYNAKGLLKSA 161 (327)
T ss_pred ehhhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCccccccHHHHHhcCCCCEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999764444568999988889999999999999999999999999999
Q ss_pred HhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEecc
Q 017513 195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS 274 (370)
Q Consensus 195 ~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (370)
++.++|+|||+++.+|+.+ +.++++++.+++||+.++++|+|++||+||++++.|++|++.|+++||+++|||++|
T Consensus 162 ~~~~~Pv~ire~~~l~~~~----~~v~~~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 237 (327)
T CHL00144 162 IRSNNPVIFFEHVLLYNLK----EEIPDNEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLIS 237 (327)
T ss_pred HhCCCcEEEEEcHHhcCCC----CCCCCCCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 9999999999999988743 234555677899999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHH
Q 017513 275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVR 354 (370)
Q Consensus 275 l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~ 354 (370)
|+|||+++|.++++++++|||+|||+..||||++|++.+.+++|..++.|+.++|++|.|+++...+++.++||+++|++
T Consensus 238 ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~va~~l~e~~f~~~~~pv~rl~~~d~~~~~~~~~~~~~gl~~~~I~~ 317 (327)
T CHL00144 238 LKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAELIAQINEHLFDELDAPIVRLSSQDVPTPYNGPLEEATVIQPAQIIE 317 (327)
T ss_pred CCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHHHHHHHHHhchhhcCCCeEEEccCCCcCCCCccHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999887666789999999999988656677778999999999
Q ss_pred HHHHHHhccc
Q 017513 355 AAKRACYRSV 364 (370)
Q Consensus 355 ~i~~~l~~~~ 364 (370)
+++++++.+|
T Consensus 318 ~i~~~l~~~~ 327 (327)
T CHL00144 318 AVEQIITNKK 327 (327)
T ss_pred HHHHHHhccC
Confidence 9999996654
No 3
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=4.2e-74 Score=530.88 Aligned_cols=323 Identities=54% Similarity=0.867 Sum_probs=310.6
Q ss_pred cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017513 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (370)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~ 115 (370)
++++++|++++|.+.|++|++|+++++|++.++|+|++|.+|.++||++|++|++|+|.+++|+|.|||+.|+||+++++
T Consensus 1 ~~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiq 80 (324)
T COG0022 1 QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQ 80 (324)
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEE
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHH
Q 017513 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI 195 (370)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~ 195 (370)
+.+|+..|+|||.|++|+.+|||||...+|+|++.+.|...+.|.+|||+.+++|.++||++|++|+||.|++++|+.|+
T Consensus 81 f~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKGLL~aAI 160 (324)
T COG0022 81 FADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAAI 160 (324)
T ss_pred ecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCCchhhccCCHHHHHhcCCCceEEecCChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999877655678999999999999999999999999999999999999
Q ss_pred hCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccc
Q 017513 196 RDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275 (370)
Q Consensus 196 ~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l 275 (370)
++++||++++++.+|+. ...++|+++|.+|+||+.+.|+|+|+|||+||.|++.+++|+++|+++||+++|||+|||
T Consensus 161 rd~dPViflE~k~lY~~---~~~eVP~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRTl 237 (324)
T COG0022 161 RDPDPVIFLEHKRLYRS---FKGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRTL 237 (324)
T ss_pred cCCCCEEEEecHHHhcc---cccCCCCCCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence 99999999999999983 235678889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHH
Q 017513 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRA 355 (370)
Q Consensus 276 ~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~ 355 (370)
+|+|.++|.++++||+++++|+|...++|+|++|+..+.|++|.+|++|+.|++..|.|.|+...|++.+.+++++|.++
T Consensus 238 ~PlD~etIi~SvkKTgR~viV~Ea~~~~g~gaei~A~i~e~~f~~LdAPi~Rv~g~d~P~p~~~~lE~~~lp~~~~I~~a 317 (324)
T COG0022 238 SPLDKETIIASVKKTGRLVIVHEAPKTGGIGAEIAALIAEEAFDYLDAPILRVAGPDTPVPYSAALEKAYLPNPERIVAA 317 (324)
T ss_pred CccCHHHHHHHHHhhCcEEEEEeccccCChHHHHHHHHHHHHHHhhcCchhhhcCCCCCCCcchhHHhhhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHh
Q 017513 356 AKRACY 361 (370)
Q Consensus 356 i~~~l~ 361 (370)
++++++
T Consensus 318 v~~v~~ 323 (324)
T COG0022 318 VKKVLE 323 (324)
T ss_pred HHHHhh
Confidence 999874
No 4
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=7.7e-72 Score=540.54 Aligned_cols=324 Identities=67% Similarity=1.099 Sum_probs=298.3
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEc
Q 017513 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (370)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t 114 (370)
+++++|++|+++|.+++++|++++++++|++.++|+|+++++|+++|+|+||||+||+||||+++|+|||++|+|||+++
T Consensus 2 ~~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~ 81 (327)
T PRK09212 2 AQLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEF 81 (327)
T ss_pred CcchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEe
Confidence 35689999999999999999999999999988888888889999999899999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 017513 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA 194 (370)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a 194 (370)
++++|++||||||+|++|+++||++|+.++|+++++++|..+++|+||+|.++++||++|||+|++|+|+.|++.+++++
T Consensus 82 ~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~~ea~~r~iP~l~V~~P~d~~e~~~~l~~a 161 (327)
T PRK09212 82 MTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQCYAAWYSHIPGLKVVAPYFAADCKGLLKTA 161 (327)
T ss_pred ehhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccCHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 99899999999999999999999999999999999987888889999988888999999999999999999999999999
Q ss_pred HhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEecc
Q 017513 195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS 274 (370)
Q Consensus 195 ~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (370)
+++++|+||++++.+|+.. ++++++++.+++||++++++|.|++||+||+++..|++|++.|+++|++++|||+++
T Consensus 162 ~~~~~Pv~i~~~~~~~~~~----~~~~~~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~ 237 (327)
T PRK09212 162 IRDPNPVIFLENEILYGHS----HEVPEEEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRT 237 (327)
T ss_pred HhCCCcEEEEEchhhcCCC----CCCCCCCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 9999999999987766531 234445577899999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCC-CHHHHH
Q 017513 275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVP-QVEDIV 353 (370)
Q Consensus 275 l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl-~~~~I~ 353 (370)
|+|||++.|.++++++++|+|+|||+..||||+++++.+.++++..++.++.+++.+|.|.+++.. .+++++ ++++|+
T Consensus 238 l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~~~~~~~~~i~r~~~~~~~~~~~~~-le~~~l~~~~~I~ 316 (327)
T PRK09212 238 LRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKEAFDYLDAPVERVTGKDVPLPYAAN-LEKLALPSEEDII 316 (327)
T ss_pred CCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHhCccccCCCeEEEcCCCccCCchHH-HHHhcCCCHHHHH
Confidence 999999999999999999999999999999999999999988654456799999999999887644 455665 999999
Q ss_pred HHHHHHHhcc
Q 017513 354 RAAKRACYRS 363 (370)
Q Consensus 354 ~~i~~~l~~~ 363 (370)
++|++++++.
T Consensus 317 ~~i~~~~~~~ 326 (327)
T PRK09212 317 EAVKKVCYRS 326 (327)
T ss_pred HHHHHHHhhc
Confidence 9999998653
No 5
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=2.8e-71 Score=555.41 Aligned_cols=323 Identities=69% Similarity=1.112 Sum_probs=298.3
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEc
Q 017513 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (370)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t 114 (370)
+.+++|++|+++|.+++++|++++++++|++.++|.++.+.+|.++|+|+||||+||+||+|+|+|+|||++|+|||+++
T Consensus 140 ~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~ 219 (464)
T PRK11892 140 VTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEF 219 (464)
T ss_pred cchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEE
Confidence 35589999999999999999999999999998888888899999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 017513 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA 194 (370)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a 194 (370)
++++|++|+||||+|++|+++||+||.+++||++++++|...+.|+||+++|+++|+++|||+|++|+|+.|++.+++++
T Consensus 220 ~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~a 299 (464)
T PRK11892 220 MTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKAA 299 (464)
T ss_pred ehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCCccccCHHHHHhhCCCCEEEEeCCHHHHHHHHHHH
Confidence 88899999999999999999999999999999999987665558889999999999999999999999999999999999
Q ss_pred HhCCCCEEEEecccccCCCCCCcccccC-CCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017513 195 IRDPDPVVFLENELLYGESFPVSAEVLD-SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 195 ~~~~~Pv~i~~~~~l~~~~~~~~~~~~~-~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
+++++|+||++++.+|+++. .++. +++.+++||++++++|.|++||++|+++..|++|++.|+++||+++|||++
T Consensus 300 i~~~~Pv~ile~~~ry~~~~----~vp~~~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~ 375 (464)
T PRK11892 300 IRDPNPVIFLENEILYGQSF----DVPKLDDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLR 375 (464)
T ss_pred hhCCCcEEEEechhhcCCCC----CCCCcCCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 99999999999888787531 1221 357789999999999999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHH
Q 017513 274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIV 353 (370)
Q Consensus 274 ~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~ 353 (370)
||+|||.++|.++++++++|||+|||+..||||++|++.+.+++|++++.|+.++|++|.|.++...|+++..+++++|+
T Consensus 376 tlkPlD~~~i~~sv~kt~~vvtvEE~~~~gGlG~~va~~l~e~~f~~l~~pv~ri~~~d~~~~~~~~le~~~l~~~~~Iv 455 (464)
T PRK11892 376 TIRPMDTETIVESVKKTNRLVTVEEGWPQSGVGAEIAARVMEQAFDYLDAPVLRVTGKDVPMPYAANLEKLALPSVAEVV 455 (464)
T ss_pred CCCcCCHHHHHHHHHhcCeEEEEeCCCcCCcHHHHHHHHHHHhCccccCCCeEEeccCCccCCcHHHHHHhcCCCHHHHH
Confidence 99999999999999999999999999999999999999999998877888999999999998876666554445999999
Q ss_pred HHHHHHHh
Q 017513 354 RAAKRACY 361 (370)
Q Consensus 354 ~~i~~~l~ 361 (370)
+++++++.
T Consensus 456 ~av~~~~~ 463 (464)
T PRK11892 456 EAVKAVCY 463 (464)
T ss_pred HHHHHHhh
Confidence 99998874
No 6
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.2e-71 Score=508.39 Aligned_cols=303 Identities=27% Similarity=0.376 Sum_probs=273.6
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEc
Q 017513 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (370)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t 114 (370)
...++|++|+++|.++.++|++||++++|+.+++. +..|.++| ||||||+||+||+|+|+|+|+|++|++||+++
T Consensus 5 ~~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~----~~~f~~~f-PdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~t 79 (312)
T COG3958 5 NTESLRKVYGETLAELGRKNSDIVVLDADLSSSTK----TGYFAKEF-PDRFFNVGIAEQDMVGTAAGLALAGKKPFVST 79 (312)
T ss_pred cchHHHHHHHHHHHHHHhcCCCEEEEecccccccc----hhHHHHhC-chhheecchHHHHHHHHHHHHHhcCCCceeec
Confidence 35679999999999999999999999999986554 56899999 99999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCC-CCCcc-hHHHHHHHccCCCcEEEeeCCHHHHHHHH
Q 017513 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAG-VGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLL 191 (370)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~-~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l 191 (370)
|++|.+.|+||||||++|| .++||.+++. +|.+.+ +|+|| +.+|+++||.+||++|++|+|+.+++.++
T Consensus 80 fa~F~s~Ra~EQir~~iay--------~~lnVKiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~ 151 (312)
T COG3958 80 FAAFLSRRAWEQIRNSIAY--------NNLNVKIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAIL 151 (312)
T ss_pred hHHHHHHHHHHHHHHHhhh--------ccCCeEEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHH
Confidence 9876677999999999997 5788888874 677654 99998 45678999999999999999999999999
Q ss_pred HHHHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEE
Q 017513 192 KAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVIN 271 (370)
Q Consensus 192 ~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~ 271 (370)
+++.++++|+|+|..|. ++| ..++..+|.|++||++++++|+|++||++|.|+..|++|++.|+++||++.|||
T Consensus 152 ~~~~~~~GP~Y~Rl~R~----~~p--~~~~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~ 225 (312)
T COG3958 152 DQIADYKGPVYMRLGRG----KVP--VVVDEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVIN 225 (312)
T ss_pred HHHHhcCCCEEEEecCC----CCC--ceecCCCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999997653 222 122333588999999999999999999999999999999999999999999999
Q ss_pred eccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCH
Q 017513 272 LRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQV 349 (370)
Q Consensus 272 ~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~ 349 (370)
+.||||+|++.+.+.++++++|||+|||++.||||+.|++.+++++ +.|++++|++|.|+.+ ..+|.++||+|+
T Consensus 226 m~tIKPiD~~~i~~~A~~t~~IvT~EeHsi~GGlGsaVAEvlse~~----p~~~~riGvp~~fg~sg~~~~Ll~~ygl~~ 301 (312)
T COG3958 226 MFTIKPIDEQAILKAARETGRIVTAEEHSIIGGLGSAVAEVLSENG----PTPMRRIGVPDTFGRSGKADELLDYYGLDP 301 (312)
T ss_pred cCccCCCCHHHHHHHHhhcCcEEEEecceeecchhHHHHHHHHhcC----CcceEEecCCchhccccchHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999999999986 5789999999999864 478889999999
Q ss_pred HHHHHHHHHHH
Q 017513 350 EDIVRAAKRAC 360 (370)
Q Consensus 350 ~~I~~~i~~~l 360 (370)
++|++++++++
T Consensus 302 ~~I~~~v~~~~ 312 (312)
T COG3958 302 ESIAARVLELL 312 (312)
T ss_pred HHHHHHHHhhC
Confidence 99999999864
No 7
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=1e-70 Score=536.84 Aligned_cols=324 Identities=58% Similarity=0.947 Sum_probs=301.3
Q ss_pred cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEE
Q 017513 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (370)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~ 113 (370)
.++++||++|+++|.+++++||+++++++|++.++|+++.+++|+++|+|+||||+||+||+|+++|+|||++|+|||++
T Consensus 32 ~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv~ 111 (355)
T PTZ00182 32 TVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIAE 111 (355)
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEEE
Confidence 55778999999999999999999999999998777778878999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (370)
Q Consensus 114 t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (370)
+++++|++||+|||+|++|+++||++|++++|+++++++|..+++|+||+|.++++|+++|||+|++|+|+.|++.++++
T Consensus 112 ~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~~ea~lr~iPn~~V~~Psd~~e~~~~l~~ 191 (355)
T PTZ00182 112 FMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQSFEAYFAHVPGLKVVAPSDPEDAKGLLKA 191 (355)
T ss_pred echhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccchHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 87679999999999999999999999999999999988777788999998888999999999999999999999999999
Q ss_pred HHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017513 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 194 a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
++++++|+||++|+.+++...+ .++.+++.+++|+++++++|.|++||+||+++..|++|++.|+++|++++|||++
T Consensus 192 a~~~~~P~~i~~p~~l~r~~~~---~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~ 268 (355)
T PTZ00182 192 AIRDPNPVVFFEPKLLYRESVE---VVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLR 268 (355)
T ss_pred HHhCCCcEEEEeehHHhCCCCC---CCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 9999999999999988875322 2233456788999999999999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHH
Q 017513 274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIV 353 (370)
Q Consensus 274 ~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~ 353 (370)
+++|||.+.|.+.++++++|+|+|||+..||||++|++.+.++++..++.|+.++|++|.|+|++..|++.+++++++|+
T Consensus 269 ~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~~~~~l~~pv~ri~~~d~~~p~~~~le~~~~~~~~~i~ 348 (355)
T PTZ00182 269 SLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMEDCFLYLEAPIKRVCGADTPFPYAKNLEPAYLPDKEKVV 348 (355)
T ss_pred eCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHhhhhhcCCCeEEeCCCCccCCCChHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999988766788999999999999988889999999999999
Q ss_pred HHHHHHH
Q 017513 354 RAAKRAC 360 (370)
Q Consensus 354 ~~i~~~l 360 (370)
+++++++
T Consensus 349 ~~~~~~~ 355 (355)
T PTZ00182 349 EAAKRVL 355 (355)
T ss_pred HHHHHhC
Confidence 9999864
No 8
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=5e-66 Score=466.26 Aligned_cols=327 Identities=70% Similarity=1.129 Sum_probs=313.7
Q ss_pred cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEE
Q 017513 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (370)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~ 113 (370)
++.++.|+|++++|.+.+.+|+++++++++++.++|+|+++++|.++||+.|++|++|+|....|+|.|+|+.|+||+++
T Consensus 32 ~~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G~~RV~DTPItE~gFtG~avGAA~~GLrPi~e 111 (359)
T KOG0524|consen 32 AKEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFGDKRVLDTPITEMGFTGIAVGAAMAGLRPICE 111 (359)
T ss_pred ceeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcCCceeecCcchhcccchhhHhHHHhCcchhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (370)
Q Consensus 114 t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (370)
.+.-.|++.++|||.|+.++++|||||++++|+||+++.|...+.|.+|||++.+|+.++||++|++|.+++|++++++.
T Consensus 112 fMtfnFsmqAid~IiNsaakt~YmSgG~~~~piVfRGPnG~~~gv~AqHSQ~f~~wy~siPGlkvvapysaedakGLlKa 191 (359)
T KOG0524|consen 112 FMTFNFSMQAIDQIINSAAKTHYMSGGQQPVPIVFRGPNGAAAGVAAQHSQDFASWYGSIPGLKVVAPYSAEDAKGLLKA 191 (359)
T ss_pred hhcchhHHHHHHHHHHHHHHHhcccCCceeccEEEeCCCCcccchhhhhhhhhHHHhccCCCceEeccCChhhhhhHHHH
Confidence 98878999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred HHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017513 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 194 a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
|+++++||+++++..||+..+++.++--.++|-.++||+.+.|+|+|+||+++..++..++||++.|.++|++++|||+|
T Consensus 192 AIRd~NPVV~lEnelLYg~~f~i~~E~ls~~fv~p~gkAkier~G~~iTivt~Sr~v~~~leAA~~L~~~Gvs~EVInlr 271 (359)
T KOG0524|consen 192 AIRDENPVVFLENELLYGLSFEIPEEALSKDFVLPLGKAKIEREGTHITIVTYSRMVGHCLEAAETLVAKGVSAEVINLR 271 (359)
T ss_pred hccCCCCeEEEechhhcCCCccCChhhcCcceeeeccceeeeecCCceEEEEechhHHHHHHHHHHHHhcCCCceeEeee
Confidence 99999999999999899877655444444678899999999999999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHH
Q 017513 274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIV 353 (370)
Q Consensus 274 ~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~ 353 (370)
||+|||.++|.++++|+.++++||+.+..+|+|++|+..+.|+.|++|++|+.|+...|.|.|+...|++...+++++|+
T Consensus 272 SirP~D~~tI~~Sv~KT~~lvtVe~~~p~~gigaei~A~i~E~~fdyLdAPv~rvtg~DvP~PYa~~lE~~a~p~~~~iV 351 (359)
T KOG0524|consen 272 SIRPFDIETIGASVKKTNRLVTVEEGWPQFGIGAEICAQIMENAFDYLDAPVQRVTGADVPTPYAKTLEDWAVPQPADIV 351 (359)
T ss_pred ccCcccHHHHHHHHhhhceEEEEeccccccchhHHHHHHHHHHHHhhhcchhhhhcCCCCCCccchhhHhhcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 017513 354 RAAKRAC 360 (370)
Q Consensus 354 ~~i~~~l 360 (370)
.++++++
T Consensus 352 ~Avk~~~ 358 (359)
T KOG0524|consen 352 TAVKKLC 358 (359)
T ss_pred HHHHHhh
Confidence 9999876
No 9
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=6.6e-64 Score=516.79 Aligned_cols=311 Identities=19% Similarity=0.247 Sum_probs=273.8
Q ss_pred cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017513 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (370)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~ 115 (370)
..+|+++|+++|.+++++|++||++++|+...++ +.+|+++| |+||||+||||||||++|+|||++|+|||+++|
T Consensus 380 ~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gtg----l~~f~~~f-PdRffDvGIAEQhaVt~AAGLA~~G~kPvv~iy 454 (701)
T PLN02225 380 RRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDAS----LITFQERF-PDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIP 454 (701)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCccCccc----HHHHHHHc-cccccccCccHHHHHHHHHHHHHCCCEEEEEee
Confidence 5689999999999999999999999999973222 57899999 999999999999999999999999999999998
Q ss_pred cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCCCCCCcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (370)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~~~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (370)
+ +|++||||||+|++|+ +++||++++ ++|.++.+|+||++ .|+++||++|||+|++|+|+.|++.++++
T Consensus 455 s-tFlqRAyDQI~~Dval--------~~lpV~~vid~aGlvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~ 525 (701)
T PLN02225 455 S-AFLQRAYDQVVHDVDR--------QRKAVRFVITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVAT 525 (701)
T ss_pred h-hHHHHHHHHHHHHHHh--------hcCCceEEEECCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 6 8899999999999995 678999888 46777789999965 55799999999999999999999999999
Q ss_pred HHh-CCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEe
Q 017513 194 AIR-DPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (370)
Q Consensus 194 a~~-~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~ 272 (370)
|+. .++|+|||+||..+.. ....+ .+++.+++||++++++|.|++||++|+++..|++|++.|+++||+++|||+
T Consensus 526 A~~~~~gPv~IR~pRg~~~~---~~~~~-~~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI~vtVIdl 601 (701)
T PLN02225 526 AAYVTDRPVCFRFPRGSIVN---MNYLV-PTGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVADA 601 (701)
T ss_pred HHhcCCCCEEEEecccccCC---CCcCC-CCCccccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 985 5699999998864321 00001 124668899999999999999999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHH
Q 017513 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVE 350 (370)
Q Consensus 273 ~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~ 350 (370)
+|+||||++.|.++++++++|||+|||+. ||||++|++++.+++....+.+++++|++|.|+++ .++|.+.+|||++
T Consensus 602 r~ikPLD~e~I~~~~~k~~~vVTvEE~~~-GG~Gs~Va~~l~~~~~~~~~~~v~~iGipd~F~~~G~~~~ll~~~GLdae 680 (701)
T PLN02225 602 RFCKPLDIKLVRDLCQNHKFLITVEEGCV-GGFGSHVAQFIALDGQLDGNIKWRPIVLPDGYIEEASPREQLALAGLTGH 680 (701)
T ss_pred CCCCCCCHHHHHHHHhhcCeEEEEcCCCC-CchHHHHHHHHHhcCCCcCCCcEEEEecCCcCcCCCCHHHHHHHhCcCHH
Confidence 99999999999999999999999999997 99999999999987521013578999999999874 5788889999999
Q ss_pred HHHHHHHHHHhcccc
Q 017513 351 DIVRAAKRACYRSVP 365 (370)
Q Consensus 351 ~I~~~i~~~l~~~~~ 365 (370)
+|+++|+++++..++
T Consensus 681 ~I~~~i~~~l~~~~~ 695 (701)
T PLN02225 681 HIAATALSLLGRTRE 695 (701)
T ss_pred HHHHHHHHHHhhccc
Confidence 999999999965544
No 10
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=7e-62 Score=484.04 Aligned_cols=308 Identities=24% Similarity=0.328 Sum_probs=278.5
Q ss_pred cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEE
Q 017513 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVE 113 (370)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~ 113 (370)
....+|.++|+++|.+++++|++||.+++.|..-+| +..|+++| |+||||+||||||+|++|+|||.+|+||+++
T Consensus 313 ~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gtG----L~~F~~~f-P~R~fDVGIAEQHAVT~AAGlA~~G~kPvva 387 (627)
T COG1154 313 PSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGTG----LVKFSKKF-PDRFFDVGIAEQHAVTFAAGLAAEGMKPVVA 387 (627)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCCC----hHHHHHhC-chhheehhhhHHHHHHHHHHHHhCCCCCEEE
Confidence 456779999999999999999999999999984333 57899999 9999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCCCCCCcchHHH-HHHHccCCCcEEEeeCCHHHHHHHH
Q 017513 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLL 191 (370)
Q Consensus 114 t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~~~G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l 191 (370)
+|+ +|+||||||+.||+| ++++||+|+. |+|..|.||+||++.+ +++||+||||+|++|+|.+|++.++
T Consensus 388 IYS-TFLQRAYDQliHDva--------iqnLPV~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ml 458 (627)
T COG1154 388 IYS-TFLQRAYDQLIHDVA--------IQNLPVTFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQML 458 (627)
T ss_pred Eec-HHHHHHHHHHHHHHH--------hccCCeEEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHHHH
Confidence 986 999999999999999 6999999998 6999999999997655 8999999999999999999999999
Q ss_pred HHHHhCC-CCEEEEecccccCCCCCCcccccC-CCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeE
Q 017513 192 KAAIRDP-DPVVFLENELLYGESFPVSAEVLD-SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (370)
Q Consensus 192 ~~a~~~~-~Pv~i~~~~~l~~~~~~~~~~~~~-~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~V 269 (370)
++++.++ +|+.||.||+-... .... ....+++|+++++++|.|++|+++|.++..|++|++.|.++||+++|
T Consensus 459 ~ta~~~~~gP~AiRyPrg~~~~------~~~~~~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TV 532 (627)
T COG1154 459 YTALAQDDGPVAIRYPRGNGVG------VILTPELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTV 532 (627)
T ss_pred HHHHhcCCCCeEEEecCCCCCC------CCcccccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEE
Confidence 9999986 89999988752211 1111 12347899999999999999999999999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCC
Q 017513 270 INLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVP 347 (370)
Q Consensus 270 i~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl 347 (370)
||++++||+|++.|++++++++.+||+||+.+.||+|+.|+++|.++++ ..+++++|++|.|+++ .+++...+||
T Consensus 533 vd~rfvkPlD~~ll~~La~~h~~~vtlEe~~~~GG~Gs~v~efl~~~~~---~~~v~~lglpd~fi~hg~~~el~~~~gL 609 (627)
T COG1154 533 VDPRFVKPLDEALLLELAKSHDLVVTLEENVVDGGFGSAVLEFLAAHGI---LVPVLNLGLPDEFIDHGSPEELLAELGL 609 (627)
T ss_pred EcCeecCCCCHHHHHHHHhhcCeEEEEecCcccccHHHHHHHHHHhcCC---CCceEEecCChHhhccCCHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999998763 4799999999999885 5788888999
Q ss_pred CHHHHHHHHHHHHhccc
Q 017513 348 QVEDIVRAAKRACYRSV 364 (370)
Q Consensus 348 ~~~~I~~~i~~~l~~~~ 364 (370)
|++.|+++|.+.++...
T Consensus 610 d~~~i~~~i~~~l~~~~ 626 (627)
T COG1154 610 DAEGIARRILEWLKARS 626 (627)
T ss_pred CHHHHHHHHHHHHhhcc
Confidence 99999999999987653
No 11
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=6.5e-61 Score=498.58 Aligned_cols=303 Identities=22% Similarity=0.340 Sum_probs=272.6
Q ss_pred cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017513 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (370)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~ 115 (370)
..+++++|+++|.+++++|++|+++++|+..+++ +.+|+++| |+||||+||+||||+++|+|||++|++||+++|
T Consensus 309 ~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~----~~~f~~~f-P~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~~ 383 (617)
T TIGR00204 309 LPSYSKIFSDTLCELAKKDNKIVGITPAMPEGSG----LDKFSRKF-PDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAIY 383 (617)
T ss_pred CccHHHHHHHHHHHHHhhCcCEEEEECCccCCcC----hHHHHHHC-ccccccCCccHHHHHHHHHHHHHCCCEEEEEec
Confidence 4679999999999999999999999999964333 57899999 999999999999999999999999999999996
Q ss_pred cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCCCCCcchHHH-HHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKA 193 (370)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~~G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (370)
+ .|++||+|||++++|+ +++||+++++ +|..+++|+||++.. +++|+++|||+|++|+|+.|++.++++
T Consensus 384 a-~Fl~ra~dQi~~~~a~--------~~lpV~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~ 454 (617)
T TIGR00204 384 S-TFLQRAYDQVVHDVCI--------QKLPVLFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYT 454 (617)
T ss_pred H-HHHHHHHHHHHHHHHh--------cCCCEEEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Confidence 5 8889999999999995 6899999985 677777999997644 699999999999999999999999999
Q ss_pred HHhCC-CCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEe
Q 017513 194 AIRDP-DPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (370)
Q Consensus 194 a~~~~-~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~ 272 (370)
|++.+ +|+|||++|..++.. ..+..++.+++|+++++++|.|++||++|++++.|++|++.|+++||+++|||+
T Consensus 455 a~~~~~~Pv~ir~~r~~~~~~-----~~~~~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~ 529 (617)
T TIGR00204 455 GYHYDDGPIAVRYPRGNAVGV-----ELTPEPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATVVDA 529 (617)
T ss_pred HHhCCCCCEEEEEccCCcCCc-----ccCCccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 99975 999999987644210 011224668899999999999999999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHH
Q 017513 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVE 350 (370)
Q Consensus 273 ~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~ 350 (370)
+||+|||+++|.++++++++|||+|||+..||||++|++++.+++ ++.++.++|++|.|+++ .++|.+.+|||++
T Consensus 530 ~~lkPlD~e~i~~~~~k~~~vvtvEE~~~~GGlGs~v~~~l~~~~---~~~~v~~ig~~d~~~~~g~~~~L~~~~Gl~~~ 606 (617)
T TIGR00204 530 RFVKPLDEELILEIAASHEKLVTVEENAIMGGAGSAVLEFLMDQN---KLVPVKRLGIPDFFIPHGTQEEVLAELGLDTA 606 (617)
T ss_pred CcCCcCCHHHHHHHHhhcCeEEEEECCCCccChHHHHHHHHHhcC---CCCCeEEEeCCCcCcCCCCHHHHHHHHCcCHH
Confidence 999999999999999999999999999999999999999999875 35799999999999875 4688899999999
Q ss_pred HHHHHHHHHH
Q 017513 351 DIVRAAKRAC 360 (370)
Q Consensus 351 ~I~~~i~~~l 360 (370)
+|+++|++++
T Consensus 607 ~I~~~i~~~~ 616 (617)
T TIGR00204 607 GMEAKILAWL 616 (617)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 12
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=4e-60 Score=492.06 Aligned_cols=309 Identities=21% Similarity=0.282 Sum_probs=270.0
Q ss_pred cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017513 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (370)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~ 115 (370)
..++.++|+++|.+++++|++||++++|++ |.+++ ..|+++| |+||||+||+||||+++|+|||+.|+|||+++|
T Consensus 355 ~~~~s~a~~~aL~~~a~~d~~vv~ita~m~---g~~gl-~~f~~~f-P~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~f 429 (677)
T PLN02582 355 TQSYTTYFAEALIAEAEVDKDVVAIHAAMG---GGTGL-NLFARRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIY 429 (677)
T ss_pred CcCHHHHHHHHHHHHHccCCCEEEEeCCCC---Cccch-HHHHHHc-CccccccCcCHHHHHHHHHHHHHCCCeEEEEec
Confidence 357999999999999999999999999987 44444 5899999 999999999999999999999999999999996
Q ss_pred cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCCCCCcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (370)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (370)
+ .|++||||||++++| .+++||+++.. +|..+++|+||++ .|+++||++|||+|++|+|+.|++.++++
T Consensus 430 s-~Fl~RA~DQI~~dva--------l~~lpVv~v~~~aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~ 500 (677)
T PLN02582 430 S-SFLQRGYDQVVHDVD--------LQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVAT 500 (677)
T ss_pred H-HHHHHHHHHHHHHHH--------hcCCCEEEEEECCCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 5 888999999999999 47899999985 6888889999976 45799999999999999999999999999
Q ss_pred HHhC-CCCEEEEecccccCCCCCCcccccCC--CcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEE
Q 017513 194 AIRD-PDPVVFLENELLYGESFPVSAEVLDS--SFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270 (370)
Q Consensus 194 a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~--~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi 270 (370)
|++. ++|+|||++|.... . ..++.+ ++.+++|+++++++|.|++|||+|++++.|++|++.|+++||+++||
T Consensus 501 al~~~~gPv~IR~pr~~~~-~----~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VI 575 (677)
T PLN02582 501 AAAIDDRPSCFRYPRGNGI-G----VQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERHGLSATVA 575 (677)
T ss_pred HHhCCCCCEEEEEecCCCC-C----cccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhcCCCEEEE
Confidence 9975 59999998875311 0 011211 24578999999999999999999999999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCC
Q 017513 271 NLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQ 348 (370)
Q Consensus 271 ~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~ 348 (370)
|++|++|||++.|.+++++++.|||+|||+. ||||+.|++++.+++......++.++|++|.|+.+ .++|.+.+|||
T Consensus 576 d~~~lkPlD~~~i~~~~k~~~~vVtvEe~~~-GG~Gs~va~~l~~~~~~~~~~~v~~~Gi~d~F~~~G~~~~L~~~~GL~ 654 (677)
T PLN02582 576 DARFCKPLDRALIRSLAKSHEVLITVEEGSI-GGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGAPADQLAEAGLT 654 (677)
T ss_pred EcCcCCCCCHHHHHHHhhhCCEEEEECCCCC-CcHHHHHHHHHHhcCCccCCceeEEecCCCcccCcCCHHHHHHHhCcC
Confidence 9999999999999888877888999999998 99999999999986421112478999999999874 57888999999
Q ss_pred HHHHHHHHHHHHhccc
Q 017513 349 VEDIVRAAKRACYRSV 364 (370)
Q Consensus 349 ~~~I~~~i~~~l~~~~ 364 (370)
+++|+++|+++++.++
T Consensus 655 ~e~I~~~i~~~l~~~~ 670 (677)
T PLN02582 655 PSHIAATVLNVLGQTR 670 (677)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999996443
No 13
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.5e-59 Score=489.73 Aligned_cols=310 Identities=23% Similarity=0.304 Sum_probs=274.1
Q ss_pred ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEccc
Q 017513 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMT 116 (370)
Q Consensus 37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~ 116 (370)
.+|+++|+++|.+++++||+++++++|+..+. + ..+|+++| |+||||+||+||+|+++|+|||+.|+|||+++|+
T Consensus 319 ~~~~~~f~~~L~~la~~d~~iv~isadl~~~~---~-~~~f~~~~-p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~~f~ 393 (641)
T PRK12571 319 PSYTSVFGEELTKEAAEDSDIVAITAAMPLGT---G-LDKLQKRF-PNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAVYS 393 (641)
T ss_pred hhHHHHHHHHHHHHHhhCCCEEEEeCCccCCC---C-hHHHHHhC-CCcccccCccHHHHHHHHHHHHHCCCEEEEEehH
Confidence 57999999999999999999999999997432 2 47899999 9999999999999999999999999999999965
Q ss_pred chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCCCCCCcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 017513 117 FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAA 194 (370)
Q Consensus 117 ~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~~~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a 194 (370)
.|++||+|||++++| .+++||++++ ++|..+++|+||++ .++++||++|||+|++|+|+.|++.++++|
T Consensus 394 -~Fl~ra~dQI~~~~a--------~~~lpv~~v~~~~G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a 464 (641)
T PRK12571 394 -TFLQRGYDQLLHDVA--------LQNLPVRFVLDRAGLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTA 464 (641)
T ss_pred -HHHHHHHHHHHHHHh--------hcCCCeEEEEECCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 888999999999999 4789999998 46777889999976 447999999999999999999999999999
Q ss_pred HhC-CCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017513 195 IRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 195 ~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
++. ++|+|||++|..+.. ..++.+++.+++||+.++++|.|++|||+|++++.|++|++.|+++||+++|||++
T Consensus 465 ~~~~~~P~~ir~~r~~~~~-----~~~~~~~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~ 539 (641)
T PRK12571 465 AAHDDGPIAVRFPRGEGVG-----VEIPAEGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPR 539 (641)
T ss_pred HhCCCCcEEEEEecCcCCc-----cccCCCCccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 995 899999998764321 11223345678999999999999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHH
Q 017513 274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVED 351 (370)
Q Consensus 274 ~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~ 351 (370)
||+|||++.+.+++ ++.+++|+|||+..||||++|++.+.++++..++.++.++|++|.|+++ .+++.+.+|+|+++
T Consensus 540 ~lkPlD~~~i~sv~-k~~~vvvveE~~~~gG~g~~v~~~l~~~~~~~l~~~v~~ig~~d~f~~~g~~~el~~~~gl~~~~ 618 (641)
T PRK12571 540 FVKPLDEALTDLLV-RHHIVVIVEEQGAMGGFGAHVLHHLADTGLLDGGLKLRTLGLPDRFIDHASREEMYAEAGLTAPD 618 (641)
T ss_pred cCCCcCHHHHHHHh-hhCCEEEEECCCCCCCHHHHHHHHHHhcCccccCCCeEEEecCCcCCCCCCHHHHHHHhCcCHHH
Confidence 99999999986655 5558999999999999999999999998765456799999999999875 46788889999999
Q ss_pred HHHHHHHHHhccccc
Q 017513 352 IVRAAKRACYRSVPM 366 (370)
Q Consensus 352 I~~~i~~~l~~~~~~ 366 (370)
|+++|++++++.+++
T Consensus 619 I~~~i~~~l~~~~~~ 633 (641)
T PRK12571 619 IAAAVTGALARLSGV 633 (641)
T ss_pred HHHHHHHHHHhccCC
Confidence 999999999877765
No 14
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=1.5e-58 Score=478.26 Aligned_cols=299 Identities=20% Similarity=0.225 Sum_probs=264.1
Q ss_pred cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017513 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (370)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~ 115 (370)
..+++++|+++|.+++++|++++++++|++. .+++ .+|.++| |+||||+||+||||+++|+|||++|+|||+.+|
T Consensus 277 ~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~---~~~~-~~f~~~f-P~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~~f 351 (581)
T PRK12315 277 GESYSSVTLDYLLKKIKEGKPVVAINAAIPG---VFGL-KEFRKKY-PDQYVDVGIAEQESVAFASGIAANGARPVIFVN 351 (581)
T ss_pred CcCHHHHHHHHHHHHhccCCCEEEEeCcccc---ccCc-HHHHHhc-cccccCCCchHHHHHHHHHHHHHCcCeEEEEee
Confidence 4579999999999999999999999999873 3443 7899999 999999999999999999999999999999887
Q ss_pred cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCCCCCcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (370)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (370)
+ .|++||+|||++++|+ +++||++++. +|.++ +|+||++ .|+++||++|||+|++|+|+.|++.++++
T Consensus 352 s-~Fl~ra~dQi~~d~a~--------~~lpv~~~~~~~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~ 421 (581)
T PRK12315 352 S-TFLQRAYDQLSHDLAI--------NNNPAVMIVFGGSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEW 421 (581)
T ss_pred H-HHHHHHHHHHHHHHHh--------cCCCEEEEEECCcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHH
Confidence 5 7889999999999994 7899999985 56665 9999965 45799999999999999999999999999
Q ss_pred HHhC-CCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhc-CCceeEEE
Q 017513 194 AIRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVIN 271 (370)
Q Consensus 194 a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~ 271 (370)
|++. ++|+|||++|..++.. ......+..+++.++++|.|++|||+|++++.|++|++.|+++ ||+++|||
T Consensus 422 a~~~~~gP~~ir~~r~~~~~~-------~~~~~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid 494 (581)
T PRK12315 422 ALTQHEHPVAIRVPEHGVESG-------PTVDTDYSTLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLIN 494 (581)
T ss_pred HHhCCCCcEEEEEcCCccCCC-------CCCccCcccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEe
Confidence 9986 7999999988755421 1111234456889999999999999999999999999999999 99999999
Q ss_pred eccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCH
Q 017513 272 LRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQV 349 (370)
Q Consensus 272 ~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~ 349 (370)
++|++|||++.+.++.++++.+||+|||+..||||++|++++.+++ .++.++|++|.|+.+ .++|++.+|+|+
T Consensus 495 ~~~ikPlD~~~i~~~~~~~~~vvtvEe~~~~GG~gs~v~~~l~~~~-----~~~~~~gi~d~f~~~g~~~~l~~~~Gl~~ 569 (581)
T PRK12315 495 PKFITGLDEELLEKLKEDHELVVTLEDGILDGGFGEKIARYYGNSD-----MKVLNYGAKKEFNDRVPVEELYKRNHLTP 569 (581)
T ss_pred cCcCCCCCHHHHHHHHhhCCEEEEEcCCCcCCCHHHHHHHHHHcCC-----CeEEEecCCCCCCCCCCHHHHHHHHCcCH
Confidence 9999999999998888778889999999999999999999998753 478999999988864 468889999999
Q ss_pred HHHHHHHHHHHh
Q 017513 350 EDIVRAAKRACY 361 (370)
Q Consensus 350 ~~I~~~i~~~l~ 361 (370)
++|+++|+++++
T Consensus 570 ~~I~~~i~~~l~ 581 (581)
T PRK12315 570 EQIVEDILSVLK 581 (581)
T ss_pred HHHHHHHHHHhC
Confidence 999999998763
No 15
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=3.7e-57 Score=469.35 Aligned_cols=297 Identities=27% Similarity=0.362 Sum_probs=265.0
Q ss_pred ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEccc
Q 017513 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMT 116 (370)
Q Consensus 37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~ 116 (370)
.+||++|+++|.+++++||+++++++|+..++ + ...|+++| |+||||+||+||+|+++|+|||++|++||+++|+
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~---~-~~~f~~~~-p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~~~f~ 353 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGT---G-LVKFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVVAIYS 353 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCC---C-HHHHHHHh-hhhccCCChHHHHHHHHHHHHHHCCCeeEEEeeH
Confidence 67999999999999999999999999986332 2 35699999 9999999999999999999999999999999965
Q ss_pred chHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCCCCCcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 017513 117 FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAA 194 (370)
Q Consensus 117 ~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a 194 (370)
.|++||+|||++++|+ +++||+++++ +|..+++|+||++ .++++||++||++|++|+|++|++.+++++
T Consensus 354 -~F~~ra~dQi~~~~a~--------~~~pv~~v~~~~G~~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a 424 (580)
T PRK05444 354 -TFLQRAYDQVIHDVAL--------QNLPVTFAIDRAGLVGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTA 424 (580)
T ss_pred -HHHHHHHHHHHHHhhh--------cCCCEEEEEeCCCcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 7888999999999994 7899999985 6777789999966 447999999999999999999999999999
Q ss_pred HhC-CCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017513 195 IRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 195 ~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
++. ++|+|||++|..++.. ...+.+.+++|+++++++|.|++|||+|++++.|++|++.|+ +++|||++
T Consensus 425 ~~~~~~P~~ir~~r~~~~~~------~~~~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~ 494 (580)
T PRK05444 425 LAYDDGPIAIRYPRGNGVGV------ELPELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERLA----SATVVDAR 494 (580)
T ss_pred HhCCCCcEEEEecCCCCCCC------CCCCcccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC----CCEEEEeC
Confidence 976 8999999987654310 011246688999999999999999999999999999999995 89999999
Q ss_pred cccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHH
Q 017513 274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVED 351 (370)
Q Consensus 274 ~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~ 351 (370)
|++|||++.+.+++++++++||+|||+..||||+++++++.++++ +.|+.++|++|.|+++ .++|++++|+|+++
T Consensus 495 ~i~p~D~~~i~~~~~~~~~vv~vEe~~~~gG~g~~va~~l~~~~~---~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~~ 571 (580)
T PRK05444 495 FVKPLDEELLLELAAKHDLVVTVEEGAIMGGFGSAVLEFLADHGL---DVPVLNLGLPDEFIDHGSREELLAELGLDAEG 571 (580)
T ss_pred cCCccCHHHHHHHHhcCCeEEEEECCCCCCCHHHHHHHHHHhhcC---CCCEEEEecCCcCCCCCCHHHHHHHHCcCHHH
Confidence 999999999999999999999999999999999999999998754 4689999999998875 46789999999999
Q ss_pred HHHHHHHHH
Q 017513 352 IVRAAKRAC 360 (370)
Q Consensus 352 I~~~i~~~l 360 (370)
|+++|++++
T Consensus 572 I~~~i~~~~ 580 (580)
T PRK05444 572 IARRILELL 580 (580)
T ss_pred HHHHHHhhC
Confidence 999998753
No 16
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=2.5e-55 Score=452.62 Aligned_cols=273 Identities=23% Similarity=0.344 Sum_probs=237.6
Q ss_pred cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017513 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (370)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~ 115 (370)
.++++++|+++|.+++++||+|+++++|++. |+. +..|+++| |+||||+||+||||+++|+|||++|+|||+++|
T Consensus 356 ~~sy~~af~~aL~e~a~~D~~Iv~l~adm~g--gt~--~~~f~~~f-PdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~f 430 (641)
T PLN02234 356 TQSYTSCFVEALIAEAEADKDIVAIHAAMGG--GTM--LNLFESRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCTIY 430 (641)
T ss_pred CCCHHHHHHHHHHHHHHHCcCEEEEECCCCC--Ccc--hHHHHHHc-cccccCCCcCHHHHHHHHHHHHHCCCeEEEEeh
Confidence 3689999999999999999999999999973 332 56788899 999999999999999999999999999999996
Q ss_pred cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCCCCCCcchHHH-HHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017513 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKA 193 (370)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~~~G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (370)
+ .|++||||||++++| .+++||++++ ++|..+++|+||++.+ ++++|++|||+|++|+|+.|++.++++
T Consensus 431 s-~Fl~RA~DQI~~dva--------~~~lpV~~v~~~aG~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~ 501 (641)
T PLN02234 431 S-SFMQRAYDQVVHDVD--------LQKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVAT 501 (641)
T ss_pred H-HHHHHHHHHHHHHHh--------hcCCCEEEEEeCCccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 5 889999999999999 4789999998 5677777999997644 799999999999999999999999999
Q ss_pred HHhC-CCCEEEEecccccCCCCCCcccccC--CCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEE
Q 017513 194 AIRD-PDPVVFLENELLYGESFPVSAEVLD--SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270 (370)
Q Consensus 194 a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~--~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi 270 (370)
++.. ++|+|||++|..+... .++. ..+.+++|+++++++|.|++||++|++++.|++|++.|+++||+++||
T Consensus 502 a~~~~~~Pv~ir~~R~~~~~~-----~~~~~~~~~~~~iGk~~vlreG~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VI 576 (641)
T PLN02234 502 AAAIDDRPSCFRYHRGNGIGV-----SLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSERGLKITVA 576 (641)
T ss_pred HHhCCCCCEEEEeeccccccc-----ccCCCCccccccCceEEEEEeCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEE
Confidence 8865 5999999998754321 1111 134578999999999999999999999999999999999999999999
Q ss_pred EeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEE
Q 017513 271 NLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERI 328 (370)
Q Consensus 271 ~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~i 328 (370)
|++|++|||.+.+.+++++++.|||+|||.. ||||++|++.+.+++......++.|.
T Consensus 577 d~rsikPlD~~~i~sl~k~~~~vVt~Ee~~~-GG~Gs~Va~~l~e~~~~~~~~~~~~~ 633 (641)
T PLN02234 577 DARFCKPLDVALIRSLAKSHEVLITVEEGSI-GGFGSHVVQFLALDGLLDGKLKVYRT 633 (641)
T ss_pred ecCCcCCCCHHHHHHHHHhCCEEEEECCCCC-CcHHHHHHHHHHHcCCCCCCceEEEE
Confidence 9999999999999887777888999999987 99999999999998642223355543
No 17
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=3.4e-53 Score=378.00 Aligned_cols=330 Identities=35% Similarity=0.630 Sum_probs=302.0
Q ss_pred cCCcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHh
Q 017513 25 SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAA 104 (370)
Q Consensus 25 ~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA 104 (370)
++...|.. .+++..-++++++|.-.++.||+-+++++|++ .+|+|..+.+++++|+.+|+||++++||.++|+.+|+|
T Consensus 30 ~~~~e~ge-~~~mnl~qsvn~al~ial~tdp~a~vfgedv~-fggvfrct~gl~~kfgk~rvfntplceqgivgfgig~a 107 (362)
T KOG0525|consen 30 STTLEAGE-KKKMNLYQSVNQALHIALETDPRAVVFGEDVA-FGGVFRCTTGLAEKFGKDRVFNTPLCEQGIVGFGIGLA 107 (362)
T ss_pred CCcccccc-cccchHHHHHHHHHHHHhhcCCceEEeccccc-cceEEEeecchHHHhCccccccCchhhcccceechhhh
Confidence 34444433 56788889999999999999999999999997 78999999999999999999999999999999999999
Q ss_pred ccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCccc-CEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCC
Q 017513 105 YYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYS 183 (370)
Q Consensus 105 ~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~-pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d 183 (370)
..|.+.+.++++++++..|+|||.|.+++.+|+||-+.++ .++++.+.|..|..+.+|||+.+++|.+.||++|+.|.+
T Consensus 108 a~g~~aiaeiqfadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavghg~~yhsqspeaff~h~pgikvviprs 187 (362)
T KOG0525|consen 108 AMGATAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGHGALYHSQSPEAFFCHVPGIKVVIPRS 187 (362)
T ss_pred hcccceEEEEeeccccchhHHHHHHHHHhheeccCCccccCceEEeccccccccccccccCCchhheecCCCceEEecCC
Confidence 9999999999999999999999999999999999999998 578887788888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHH-h
Q 017513 184 SEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILA-K 262 (370)
Q Consensus 184 ~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~-~ 262 (370)
|.|+++++..++++++|+++.+||.||+.. ..++|..+|.+|+++++++++|+|+|+|+||..++.++|++-.-+ +
T Consensus 188 p~qakglllscirdpnp~iffepk~lyr~a---~edvp~~dy~iplsqaevireg~ditlv~wgtqvh~i~e~a~l~~ek 264 (362)
T KOG0525|consen 188 PRQAKGLLLSCIRDPNPCIFFEPKILYRQA---VEDVPEGDYMIPLSQAEVIREGSDITLVAWGTQVHVIMEQACLAKEK 264 (362)
T ss_pred cchhhceeeeeccCCCceEEechHHHHHHh---hhhCCCCCccccccHHHHhhcCCceEEEEcchhhHHHHHHHHhhHHh
Confidence 999999999999999999999999999863 356788899999999999999999999999999999999887654 4
Q ss_pred cCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHH
Q 017513 263 EGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLE 342 (370)
Q Consensus 263 ~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~ 342 (370)
.|++++|||+++|-|||.|.+.+++.|++++++-.|.-.+||+|++|++.+.+++|-+|..|+.|++.-|.|.|+ ..+
T Consensus 265 ~giscevidlkti~pwd~d~v~~sv~ktgrllisheapvtggfgaeiastv~ercfl~leapisrvcg~dtpfp~--vfe 342 (362)
T KOG0525|consen 265 LGISCEVIDLKTIIPWDKDTVEESVQKTGRLLISHEAPVTGGFGAEIASTVQERCFLNLEAPISRVCGLDTPFPH--VFE 342 (362)
T ss_pred cCCceEEEeeecccCccHHHHHHHHHhhceEEEeccCCccCcchHHHHHHHHHHHHhhccCchhhhccCCCCCcc--ccc
Confidence 499999999999999999999999999999999999999999999999999999998899999999999988764 333
Q ss_pred HHhCCCHHHHHHHHHHHHh
Q 017513 343 RMAVPQVEDIVRAAKRACY 361 (370)
Q Consensus 343 ~~~gl~~~~I~~~i~~~l~ 361 (370)
-.|.+|...|.++|++.++
T Consensus 343 pfy~ptk~ki~daik~~vn 361 (362)
T KOG0525|consen 343 PFYMPTKNKILDAIKKTVN 361 (362)
T ss_pred ccccCcHhHHHHHHHHhcc
Confidence 4678999999999997653
No 18
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=1.7e-49 Score=415.52 Aligned_cols=301 Identities=19% Similarity=0.171 Sum_probs=244.3
Q ss_pred CcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccc-cchhHHHHhCCCcEeechhhHHHHHHHHHHHhc
Q 017513 27 LRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYK-ISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY 105 (370)
Q Consensus 27 ~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~-~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~ 105 (370)
.+.|....++.++|++|+++|.++++++|+++++++|++.++.+.. -...|.++| |+||||+||+||+|+++|+|||+
T Consensus 339 ~~~~~~~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~~~~~~~~~~f~~~~-p~rfi~~GIaEq~mv~~AaGlA~ 417 (653)
T TIGR00232 339 LPEFKAKLQALATRKYSQNVLNAIANVLPELLGGSADLAPSNLTKWKGSGDLHENP-LGNYIHYGVREFAMGAIMNGIAL 417 (653)
T ss_pred hhhhhccCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCcccccccchhhcC-CCCeEeecccHHHHHHHHHHHHH
Confidence 3455433567899999999999999999999999999975544310 011277888 99999999999999999999999
Q ss_pred -cCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-CCCCCCcc-hHHHHHHHccCCCcEEEee
Q 017513 106 -YGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAGVGAQH-SHCYAAWYASVPGLKVLSP 181 (370)
Q Consensus 106 -~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P 181 (370)
.|++||++||+ .|++|+++|||+. |+ +++||++++. +|. .+++|+|| ..+++++||++|||+|+.|
T Consensus 418 ~gG~~p~~~tf~-~F~~r~~~~ir~~-a~--------~~lpV~~v~th~g~~~G~dG~THq~iedia~lr~iPn~~v~~P 487 (653)
T TIGR00232 418 HGGFKPYGGTFL-MFVDYARPAIRLA-AL--------MKLPVIYVYTHDSIGVGEDGPTHQPIEQLASLRAIPNLSVWRP 487 (653)
T ss_pred cCCCeEEEEEhH-HHHHHHHHHHHHH-Hh--------cCCCEEEEEeCCccCCCCCCcccCCHHHHHHHhcCCCCEEEee
Confidence 68999999987 7788999999977 74 7899999985 554 46689999 3455899999999999999
Q ss_pred CCHHHHHHHHHHHH-hCCCCEEEEecccccCCCCCCcccccCCC-cccccCceEEe--eeCCcEEEEEechhHHHHHHHH
Q 017513 182 YSSEDARGLLKAAI-RDPDPVVFLENELLYGESFPVSAEVLDSS-FCLPIGKAKIE--REGKDVTITAFSKIVGLSLKAA 257 (370)
Q Consensus 182 ~d~~e~~~~l~~a~-~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~-~~~~~Gk~~vl--~~g~dv~Iia~G~~~~~al~Aa 257 (370)
+|+.|+..++++++ +.++|+|||.+|...+. +.+.+ ..+..|+ +++ ++|.|++||++|+++..|++|+
T Consensus 488 aD~~E~~~~~~~a~~~~~gP~~irl~r~~~~~-------~~~~~~~~~~~G~-~vl~~~~g~dv~iia~G~~v~~al~Aa 559 (653)
T TIGR00232 488 CDGNETAAAWKYALESQDGPTALILSRQNLPQ-------LEESSLEKVLKGG-YVLKDSKGPDIILIATGSEVSLAVEAA 559 (653)
T ss_pred CCHHHHHHHHHHHHhcCCCcEEEEEcCCccCC-------CCcccccccCCCc-EEEEecCCCCEEEEEeChHHHHHHHHH
Confidence 99999999999999 56899999988653321 11122 3466776 666 6789999999999999999999
Q ss_pred HHHHhcCCceeEEEeccccCCCHHH---HHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCC
Q 017513 258 EILAKEGISAEVINLRSIRPLDRST---INASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVP 334 (370)
Q Consensus 258 ~~L~~~Gi~v~Vi~~~~l~P~d~~~---i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~ 334 (370)
+.|+++||+++|||++|++|||.+. +.+++++++.+|++|||+. +||. ..+ +....++|+ |.|
T Consensus 560 ~~L~~~Gi~~~VI~~~~ikpld~~~~~~~~~~~~~~~~vvtvEe~~~-~g~~----~~~--------~~~~~~igv-d~f 625 (653)
T TIGR00232 560 KKLAAENIKVRVVSMPSFDLFDKQDEEYRESVLPANVTRLAVEAGAA-DEWY----KYA--------GLVGAILGM-DSF 625 (653)
T ss_pred HHHHhcCCcEEEEecccCcccccCCHHHHHHHhcccCceEEEecccH-hHHH----Hhc--------CCcceEEEe-cCC
Confidence 9999999999999999999997755 7777777788999999987 4442 111 111157888 788
Q ss_pred CCC--HHHHHHHhCCCHHHHHHHHHHHH
Q 017513 335 MPY--AANLERMAVPQVEDIVRAAKRAC 360 (370)
Q Consensus 335 ~~~--~~~l~~~~gl~~~~I~~~i~~~l 360 (370)
+.+ .++|.+++|+|+++|+++|++++
T Consensus 626 g~sg~~~~L~~~~Glt~e~I~~~i~~~~ 653 (653)
T TIGR00232 626 GESAPGDKLFEEFGFTVENVVAKAKKLL 653 (653)
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 764 57888999999999999998763
No 19
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=2e-49 Score=414.96 Aligned_cols=289 Identities=22% Similarity=0.222 Sum_probs=237.9
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHH------HHhCCCcEeechhhHHHHHHHHHHHhccC-
Q 017513 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLL------EKYGPERVLDTPITEAGFTGIGVGAAYYG- 107 (370)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~------~~~~p~r~~~~GIaE~~~v~~A~GlA~~G- 107 (370)
+.+++|++|+++|.+++++||+++++++|++.+++. ..+. ++| |+||||+||+||+|+++|+|||+.|
T Consensus 317 ~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~~~----~~~~~~~f~~~~~-p~R~~d~GIaE~~~vg~A~GlA~~G~ 391 (624)
T PRK05899 317 EKVATRKASGKALNALAKALPELVGGSADLAGSNNT----KIKGSKDFAPEDY-SGRYIHYGVREFAMAAIANGLALHGG 391 (624)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCCccccCc----ccccccccCccCC-CCCeeeeChhHHHHHHHHHHHHHcCC
Confidence 456789999999999999999999999999743321 2233 467 8999999999999999999999999
Q ss_pred CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCC-CCCCCcc-hHHHHHHHccCCCcEEEeeCCH
Q 017513 108 LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAA-AGVGAQH-SHCYAAWYASVPGLKVLSPYSS 184 (370)
Q Consensus 108 ~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~-~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~ 184 (370)
++||++||+ .|++|+++||++. ++ +++||++++ ++|.+ +++|+|| +.+++++||++|||+|++|+|+
T Consensus 392 ~~pv~~t~~-~F~~r~~~qir~~-~~--------~~~pv~~v~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d~ 461 (624)
T PRK05899 392 FIPFGGTFL-VFSDYARNAIRLA-AL--------MKLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADA 461 (624)
T ss_pred CeEEEEEcH-HHHHHHHHHHHHH-Hh--------cCCCEEEEEECCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCCH
Confidence 999999987 5679999999985 63 678999997 46764 5689998 3355799999999999999999
Q ss_pred HHHHHHHHHHHhC-CCCEEEEecccccCCCCCCcccccC--CCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHH
Q 017513 185 EDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLD--SSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILA 261 (370)
Q Consensus 185 ~e~~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~--~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~ 261 (370)
+|++.+++++++. ++|+|||++|...+ .+.+ ..+.++.|+ +++++|.|++||++|++++.|++|++.|+
T Consensus 462 ~e~~~~l~~a~~~~~~P~~ir~~r~~~~-------~~~~~~~~~~~~~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L~ 533 (624)
T PRK05899 462 NETAAAWKYALERKDGPSALVLTRQNLP-------VLERTAQEEGVAKGG-YVLRDDPDVILIATGSEVHLALEAADELE 533 (624)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEeCCCCC-------CcCCccccccccCCc-EEEecCCCEEEEEeCHHHHHHHHHHHHHH
Confidence 9999999999998 89999998764221 1111 124577886 88899999999999999999999999999
Q ss_pred hcCCceeEEEeccccCCCHHH---HHHHH-hcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC
Q 017513 262 KEGISAEVINLRSIRPLDRST---INASV-RKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY 337 (370)
Q Consensus 262 ~~Gi~v~Vi~~~~l~P~d~~~---i~~~~-~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~ 337 (370)
++||+++|||++||+|||.+. +...+ .....++++|++.. +||. .++ +.++.++|++| |+.+
T Consensus 534 ~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~-~g~~----~~~--------~~~~~~iGv~~-f~~~ 599 (624)
T PRK05899 534 AEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVA-DGWY----KYV--------GLDGKVLGIDT-FGAS 599 (624)
T ss_pred hcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCc-cchh----hhc--------CCCceEEECCC-CCCC
Confidence 999999999999999999993 44445 33456788887665 6661 122 33678999999 8764
Q ss_pred --HHHHHHHhCCCHHHHHHHHHHHH
Q 017513 338 --AANLERMAVPQVEDIVRAAKRAC 360 (370)
Q Consensus 338 --~~~l~~~~gl~~~~I~~~i~~~l 360 (370)
.++|.+++|+|+++|+++|++++
T Consensus 600 g~~~~l~~~~gl~~~~I~~~i~~~~ 624 (624)
T PRK05899 600 APADELFKEFGFTVENIVAAAKELL 624 (624)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 57888999999999999998763
No 20
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=1.1e-48 Score=409.13 Aligned_cols=294 Identities=20% Similarity=0.158 Sum_probs=238.0
Q ss_pred cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCc-cccchhHHHHhCCCcEeechhhHHHHHHHHHHHhc-cCCeeE
Q 017513 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGA-YKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY-YGLKPV 111 (370)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~-~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~-~G~rp~ 111 (370)
++++++|++++++|.++++++|+++++++|++.++.+ +.-...|.++| |+||||+||+||+|+++|+|||+ .|++||
T Consensus 352 ~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~-p~r~i~~GIaEq~mv~~aaGlA~~~G~~P~ 430 (663)
T PRK12753 352 PAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDP-AGNYIHYGVREFGMTAIANGIAHHGGFVPY 430 (663)
T ss_pred ccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcC-CCCEEEeeecHHHHHHHHHHHHHhCCCeEE
Confidence 5678999999999999999999999999999865443 12235688888 99999999999999999999999 789999
Q ss_pred EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCC-CCCCCcch-HHHHHHHccCCCcEEEeeCCHHHHH
Q 017513 112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQHS-HCYAAWYASVPGLKVLSPYSSEDAR 188 (370)
Q Consensus 112 ~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~-~~~G~tHs-~~~~a~~~~iP~~~V~~P~d~~e~~ 188 (370)
++||+ .|++|++||||+. |+ +++||++++. +|.+ ++||+||+ .+|+++||.+|||+|+.|+|++|+.
T Consensus 431 ~~tf~-~F~~r~~~qir~~-a~--------~~l~V~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~~ 500 (663)
T PRK12753 431 TATFL-MFVEYARNAARMA-AL--------MKARQIMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAA 500 (663)
T ss_pred EEehH-HHHHHHHHHHHHH-Hh--------cCCCeEEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHHH
Confidence 99987 7788999999976 74 7899999974 5654 66999993 4668999999999999999999999
Q ss_pred HHHHHHHh-CCCCEEEEecccccCCCCCCcccccCC---CcccccCceEEeeeCC---cEEEEEechhHHHHHHHHHHHH
Q 017513 189 GLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDS---SFCLPIGKAKIEREGK---DVTITAFSKIVGLSLKAAEILA 261 (370)
Q Consensus 189 ~~l~~a~~-~~~Pv~i~~~~~l~~~~~~~~~~~~~~---~~~~~~Gk~~vl~~g~---dv~Iia~G~~~~~al~Aa~~L~ 261 (370)
.+++++++ .++|+|||.+|.-. + .++.. ...+..|+ ++++++. |++||++|+++..|++|++.|+
T Consensus 501 ~~~~~al~~~~gP~~irl~R~~~----~---~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~L~ 572 (663)
T PRK12753 501 VAWKLAIERHNGPTALILSRQNL----A---QQERTPEQVKNIARGG-YILKDSGGKPDLILIATGSEVEITLQAAEKLT 572 (663)
T ss_pred HHHHHHHhcCCCCEEEEecCCCC----C---CCCCcccchhhccCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHHHH
Confidence 99999998 58999999876421 1 11111 12355665 7788754 9999999999999999999999
Q ss_pred hcCCceeEEEeccccCCCHHHH--HHHHhc--CCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC
Q 017513 262 KEGISAEVINLRSIRPLDRSTI--NASVRK--TNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY 337 (370)
Q Consensus 262 ~~Gi~v~Vi~~~~l~P~d~~~i--~~~~~~--~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~ 337 (370)
++||+++|||++|++|||.+.+ ++.+.. ..+.|++|+|. ...+.+. .+.+..++|+ |.|+.+
T Consensus 573 ~~gi~~~Vv~~~~~kp~d~~~~~y~~~vl~~~~~~~vtvE~~~---------~~~~~~~----~~~~~~~iGv-d~Fg~s 638 (663)
T PRK12753 573 AEGRNVRVVSMPSTDIFDAQDEAYRESVLPSNVTARVAVEAGI---------ADYWYKY----VGLKGAIIGM-TGFGES 638 (663)
T ss_pred hcCCCcEEEECCcCCccchhHHHHHHhhcccccceEEEEccCh---------HHHHHHH----cCCCCeEEEe-CCCcCc
Confidence 9999999999999999999976 222221 12349999982 2333332 1346678998 678764
Q ss_pred --HHHHHHHhCCCHHHHHHHHHHHH
Q 017513 338 --AANLERMAVPQVEDIVRAAKRAC 360 (370)
Q Consensus 338 --~~~l~~~~gl~~~~I~~~i~~~l 360 (370)
.++|.+++|+|+++|++++++++
T Consensus 639 g~~~~l~~~~Glt~~~Iv~~i~~~~ 663 (663)
T PRK12753 639 APADKLFPFFGFTVENIVAKAKKLL 663 (663)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 57888999999999999998763
No 21
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-48 Score=387.56 Aligned_cols=313 Identities=21% Similarity=0.283 Sum_probs=255.9
Q ss_pred cCCcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHh
Q 017513 25 SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAA 104 (370)
Q Consensus 25 ~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA 104 (370)
.-+|.|..+++..++|++|+++|.++++.+|++|.+++|+..++. ++-|.++| |+|||+|||+||||+++|+|+|
T Consensus 308 ~~~p~yk~~Dk~~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st~----td~~~~~~-p~R~i~~giaEq~mv~ia~G~a 382 (632)
T KOG0523|consen 308 KSLPTYKVGDKAVATRKAFGEALAALAEADPRVIGGSADLKNSTL----TDFFPKRF-PERFIECGIAEQNMVGIANGIA 382 (632)
T ss_pred ccCCccccCChhhhHHHHHHHHHHHHhhcCcCeEEEecccCCCch----hhhccccC-ccceEEEeeehhhhHHhhhchh
Confidence 345899998888999999999999999999999999999984432 44456677 9999999999999999999999
Q ss_pred ccCC-eeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCCcch-HHHHHHHccCCCcEEEe
Q 017513 105 YYGL-KPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQHS-HCYAAWYASVPGLKVLS 180 (370)
Q Consensus 105 ~~G~-rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~tHs-~~~~a~~~~iP~~~V~~ 180 (370)
..|. +||+.||+ .|++||+||+|+++- .+.+++.+. .++..|+||+||+ .+|+++||++||++|++
T Consensus 383 ~~g~~~Pf~~tf~-~F~trA~dqvr~~a~---------s~~~v~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~~ 452 (632)
T KOG0523|consen 383 CRGRTIPFCGTFA-AFFTRAFDQVRMGAL---------SQANVIYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFR 452 (632)
T ss_pred cCCCccchhHHHH-HHHHHhhhheeehhh---------ccCCcEEEEEeccccccCCCcccccHHHHHHHHhCCCceEEe
Confidence 9998 99999986 899999999999763 455666665 3456788999994 46689999999999999
Q ss_pred eCCHHHHHHHHHHHHhCC-CCEEEEecccccCCCCCCcccccCCCcccccCceE-EeeeCC-cEEEEEechhHHHHHHHH
Q 017513 181 PYSSEDARGLLKAAIRDP-DPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAK-IEREGK-DVTITAFSKIVGLSLKAA 257 (370)
Q Consensus 181 P~d~~e~~~~l~~a~~~~-~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~-vl~~g~-dv~Iia~G~~~~~al~Aa 257 (370)
|+|..|+..++..|.+.+ .|++++.++. ..+ .......+.+|++. +++++. ||++|++|+++++|++|+
T Consensus 453 PaD~~et~~av~~Aa~~~~~p~i~~~~r~----~~~----~~~~~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA 524 (632)
T KOG0523|consen 453 PADGNETENAVATAANTKGTPSIRTLSRQ----NLP----IYNNTEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAA 524 (632)
T ss_pred cCchHHHHHHHHHHHhcCCCeeEEEecCc----ccc----ccCCCchhhhccccEEEecCCCCEEEEeccHHHHHHHHHH
Confidence 999999999999999975 5888876543 111 11223346778776 677776 999999999999999999
Q ss_pred HHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC-eEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCC
Q 017513 258 EILAKEGISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMP 336 (370)
Q Consensus 258 ~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~-~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~ 336 (370)
+.|+++||+++|+|++++||||..+|+++.+.++ ++.|+|+|+..||++.++...+... -+..+..++. |.|+.
T Consensus 525 ~~L~~~gi~vrVvd~~~~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~g~~----~~~~~~~~~~-~~~~~ 599 (632)
T KOG0523|consen 525 ELLSEDGIKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAVTAAWGKY----PGILVPSLGV-DTFGR 599 (632)
T ss_pred HHHHhcCceEEEecccceeecchHHhhhhhcccceeEEEccCCCCCcchhheeeehhccc----CCccceeecc-ccCCc
Confidence 9999999999999999999999999998887765 7888888988788887776665432 1223445554 45544
Q ss_pred --CHHHHHHHhCCCHHHHHHHHHHHHhcccc
Q 017513 337 --YAANLERMAVPQVEDIVRAAKRACYRSVP 365 (370)
Q Consensus 337 --~~~~l~~~~gl~~~~I~~~i~~~l~~~~~ 365 (370)
.+.+|.+.+|+|+++|++++++++..-++
T Consensus 600 sG~p~ell~~fGit~~~Ia~~a~~~~~~~~~ 630 (632)
T KOG0523|consen 600 SGPPPELLKMFGITARHIAAAALSLIGKYRE 630 (632)
T ss_pred CCCCHHHHHHhCCCHHHHHHHHHHHHhhhcc
Confidence 34677788999999999999999976654
No 22
>PLN02790 transketolase
Probab=100.00 E-value=8.3e-48 Score=402.80 Aligned_cols=301 Identities=18% Similarity=0.156 Sum_probs=246.0
Q ss_pred cccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcc-ccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc
Q 017513 28 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY 106 (370)
Q Consensus 28 ~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~-~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~ 106 (370)
+.|...++..++|++++++|..+.+.+|+++++++|+..++.+. ..+..|+++|+|+||||+||+||||+++|+|||++
T Consensus 335 ~~~~~~~~~~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~p~Rfi~~GIaEq~mv~~AaGlA~~ 414 (654)
T PLN02790 335 PTFTPEDPADATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTPEERNVRFGVREHGMGAICNGIALH 414 (654)
T ss_pred hhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCCCCCeEEeeechHHHHHHHHHHHhc
Confidence 44543456789999999999999999999999999998654432 12457888744999999999999999999999996
Q ss_pred --CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-CCCCCCcch-HHHHHHHccCCCcEEEee
Q 017513 107 --GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAGVGAQHS-HCYAAWYASVPGLKVLSP 181 (370)
Q Consensus 107 --G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-~~~~G~tHs-~~~~a~~~~iP~~~V~~P 181 (370)
|++||++||+ .|+.|+++|||+. |+ +++||++++. +|. .++||+||+ .+|+++||++||++|++|
T Consensus 415 G~G~~P~~~tf~-~F~~~~~~~ir~~-al--------~~lpV~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~P 484 (654)
T PLN02790 415 SSGLIPYCATFF-VFTDYMRAAMRLS-AL--------SEAGVIYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRP 484 (654)
T ss_pred CCCcEEEEEecH-HHHHHHHHHHHHH-Hh--------cCCCeEEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeC
Confidence 5999999987 5667999999876 74 7899999984 454 467999994 466899999999999999
Q ss_pred CCHHHHHHHHHHHHh-CCCCEEEEecccccCCCCCCcccccCC-CcccccCceEEeeeC-----CcEEEEEechhHHHHH
Q 017513 182 YSSEDARGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKAKIEREG-----KDVTITAFSKIVGLSL 254 (370)
Q Consensus 182 ~d~~e~~~~l~~a~~-~~~Pv~i~~~~~l~~~~~~~~~~~~~~-~~~~~~Gk~~vl~~g-----~dv~Iia~G~~~~~al 254 (370)
+|++|+..+++++++ .++|+|||.+|.-.+ .++.. ...+..|+ ++++++ .|++||++|+++..|+
T Consensus 485 aD~~E~~~~l~~al~~~~gP~~irl~R~~~~-------~~~~~~~~~~~~G~-~vl~~~~~~~~~dv~iia~G~~v~~Al 556 (654)
T PLN02790 485 ADGNETAGAYKVAVTNRKRPTVLALSRQKVP-------NLPGTSIEGVEKGG-YVISDNSSGNKPDLILIGTGSELEIAA 556 (654)
T ss_pred CCHHHHHHHHHHHHHcCCCCEEEEecCCCCC-------CCCCCcccccccCc-EEEEeCCCCCCCCEEEEEcCHHHHHHH
Confidence 999999999999998 579999998765211 11211 24467887 566663 7999999999999999
Q ss_pred HHHHHHHhcCCceeEEEeccccCCCHHHHH---HHH-hcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEec
Q 017513 255 KAAEILAKEGISAEVINLRSIRPLDRSTIN---ASV-RKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAG 330 (370)
Q Consensus 255 ~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~---~~~-~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~ 330 (370)
+|++.|+++||+++|||++|++|||.+... +.+ ++++.+|++|+|+. +||++ ++ +.+..++|+
T Consensus 557 ~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~-~G~~~----~~--------~~~~~~igv 623 (654)
T PLN02790 557 KAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGST-FGWEK----YV--------GSKGKVIGV 623 (654)
T ss_pred HHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccc-hhHHH----hc--------CCCceEEEe
Confidence 999999999999999999999999999754 566 56678999999986 77654 11 224467888
Q ss_pred CCCCCCC--HHHHHHHhCCCHHHHHHHHHHHH
Q 017513 331 ADVPMPY--AANLERMAVPQVEDIVRAAKRAC 360 (370)
Q Consensus 331 ~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l 360 (370)
|.|+.+ .++|.+++|+|+++|+++|++++
T Consensus 624 -d~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~~ 654 (654)
T PLN02790 624 -DRFGASAPAGILYKEFGFTVENVVAAAKSLL 654 (654)
T ss_pred -CCCcCcCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 888764 57888999999999999998764
No 23
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=6e-48 Score=404.32 Aligned_cols=299 Identities=17% Similarity=0.164 Sum_probs=241.2
Q ss_pred cccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcc-ccchhHHHHhCC-CcEeechhhHHHHHHHHHHHhc
Q 017513 28 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGP-ERVLDTPITEAGFTGIGVGAAY 105 (370)
Q Consensus 28 ~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~-~~~~~~~~~~~p-~r~~~~GIaE~~~v~~A~GlA~ 105 (370)
+.|...++..++|++++++|.++++.+|+++++++|+..++.+. +-...|+++| | +||||+||+||||+++|+|||+
T Consensus 346 ~~~~~~~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~-P~~rfi~~GIaEq~mv~~AaGlA~ 424 (661)
T PTZ00089 346 PKYTTNDKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKAS-PEGRYIRFGVREHAMCAIMNGIAA 424 (661)
T ss_pred hhhcccCcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccC-CCCCeeeeeecHHHHHHHHHHHHH
Confidence 44433356788999999999999999999999999997544310 0013688888 8 8999999999999999999999
Q ss_pred -cCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-CCCCCCcch-HHHHHHHccCCCcEEEee
Q 017513 106 -YGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAGVGAQHS-HCYAAWYASVPGLKVLSP 181 (370)
Q Consensus 106 -~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-~~~~G~tHs-~~~~a~~~~iP~~~V~~P 181 (370)
.|++||++||+ .|++|++||||+. |+ +++||++++. +|. .+++|+||+ ..|+++||++|||+|++|
T Consensus 425 ~~G~~P~~~tf~-~Fl~Ra~dqir~~-al--------~~lpV~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~P 494 (661)
T PTZ00089 425 HGGFIPFGATFL-NFYGYALGAVRLA-AL--------SHHPVIYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRP 494 (661)
T ss_pred cCCCeEEEEehH-HHHHHHHHHHHHH-Hh--------cCCCeEEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEec
Confidence 78999999987 7889999999876 74 7899999973 453 567999994 466899999999999999
Q ss_pred CCHHHHHHHHHHHHh-CCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeC---CcEEEEEechhHHHHHHHH
Q 017513 182 YSSEDARGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREG---KDVTITAFSKIVGLSLKAA 257 (370)
Q Consensus 182 ~d~~e~~~~l~~a~~-~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g---~dv~Iia~G~~~~~al~Aa 257 (370)
+|+.|+..+++++++ .++|+|||++|.-.+ .++.....+..++.++++++ .|++||++|+++..|++|+
T Consensus 495 aD~~E~~~~l~~al~~~~gP~~irl~R~~~~-------~~~~~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~Aa 567 (661)
T PTZ00089 495 ADGTETSGAYALALANAKTPTILCLSRQNTP-------PLPGSSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEAA 567 (661)
T ss_pred CCHHHHHHHHHHHHHcCCCCEEEEecCCCCC-------CcCCCccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHHH
Confidence 999999999999995 579999998764211 12222233445566788874 7999999999999999999
Q ss_pred HHHHhcCCceeEEEeccccCCCHHHHHHH---Hh-cCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCC
Q 017513 258 EILAKEGISAEVINLRSIRPLDRSTINAS---VR-KTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADV 333 (370)
Q Consensus 258 ~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~---~~-~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~ 333 (370)
+.|++ |++++|||++|++|||.+.+... +. +...++++|+|+..| |. . . ...++|++|
T Consensus 568 ~~L~~-Gi~~~Vv~~~~ikp~d~~~~~~~~~v~~e~~~~~vtiE~~~~~g-~~--------~-~------~~~~igv~~- 629 (661)
T PTZ00089 568 KALSK-ELNVRVVSMPCWELFDQQSEEYQQSVLPSGGVPVLSVEAYVSFG-WE--------K-Y------SHVHVGISG- 629 (661)
T ss_pred HHHhc-CCCeEEEeCCCccHHHHHHHHHHHHhcCCCCCceEeHHhhHHHH-HH--------h-c------CCeEEECCC-
Confidence 99999 99999999999999999976533 33 344689999997633 21 1 1 125799988
Q ss_pred CCCC--HHHHHHHhCCCHHHHHHHHHHHHhc
Q 017513 334 PMPY--AANLERMAVPQVEDIVRAAKRACYR 362 (370)
Q Consensus 334 ~~~~--~~~l~~~~gl~~~~I~~~i~~~l~~ 362 (370)
|+.+ .++|.+++|+|+++|+++|++++.+
T Consensus 630 Fg~sg~~~~l~~~~Gl~~e~I~~~i~~~l~~ 660 (661)
T PTZ00089 630 FGASAPANALYKHFGFTVENVVEKARALAAR 660 (661)
T ss_pred ccccCCHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 7764 5788899999999999999998754
No 24
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=1.8e-46 Score=390.63 Aligned_cols=321 Identities=17% Similarity=0.139 Sum_probs=245.8
Q ss_pred hhcccCCCCcccccCCCCc-----CCcccc----cccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCc-cccchh
Q 017513 7 QKVAAGGGSPVARIRPVVS-----NLRNYS----SAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGA-YKISKG 76 (370)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~-----~~~~~~----~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~-~~~~~~ 76 (370)
.++|+...++.++.++... ..+.|. .+++..++|++++++|.++++.+|+++++++|++.++.+ +.-...
T Consensus 316 ~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~ 395 (663)
T PRK12754 316 KAYPQEAAEFTRRMKGEMPADFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKA 395 (663)
T ss_pred HHCHHHHHHHHHHhcCCCchhHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCcccccccc
Confidence 3456666666655544221 113332 234567999999999999999999999999999855442 122356
Q ss_pred HHHHhCCCcEeechhhHHHHHHHHHHHhc-cCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC
Q 017513 77 LLEKYGPERVLDTPITEAGFTGIGVGAAY-YGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA 154 (370)
Q Consensus 77 ~~~~~~p~r~~~~GIaE~~~v~~A~GlA~-~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~ 154 (370)
|.++| |+||||+||+||+|+++|+|||+ .|++||++||+ .|+.|+++|||++ |+ +++||++++. +|.
T Consensus 396 f~~~~-p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~~tf~-~F~~r~~~qir~~-a~--------~~l~V~~v~th~gi 464 (663)
T PRK12754 396 INEDA-AGNYIHYGVREFGMTAIANGIALHGGFLPYTSTFL-MFVEYARNAVRMA-AL--------MKQRQVMVYTHDSI 464 (663)
T ss_pred ccccC-CCCeEeeccchhhHHHHHhhHHhcCCCeEEEEeeH-HHHHHHHHHHHHH-HH--------cCCCeEEEEECCcc
Confidence 77888 99999999999999999999999 68999999987 6788999999986 74 7899999885 565
Q ss_pred C-CCCCCcc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCCcccccC--C-Ccccc
Q 017513 155 A-AGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLD--S-SFCLP 228 (370)
Q Consensus 155 ~-~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~--~-~~~~~ 228 (370)
+ +++|+|| ..+++++||.+|||+|+.|+|+.|+..+++++++. ++|+|||++|.-.+ .++. . ...+.
T Consensus 465 ~~G~DG~THq~iEdla~lR~iPn~~V~~PaD~~E~~~~~~~a~~~~~gP~yirl~R~~~p-------~~~~~~~~~~~~~ 537 (663)
T PRK12754 465 GLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTALILSRQNLA-------QQERTEEQLANIA 537 (663)
T ss_pred ccCCCCCCcccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhCCCCCEEEEeCCCCCC-------CCCCccchhhhcc
Confidence 4 6699999 34668999999999999999999999999999987 79999998764211 1111 1 13455
Q ss_pred cCceEEeeeCC---cEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHH--HHHHHhcCC--eEEEEecCCC
Q 017513 229 IGKAKIEREGK---DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRST--INASVRKTN--RLVTVEEGFP 301 (370)
Q Consensus 229 ~Gk~~vl~~g~---dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~--i~~~~~~~~--~vvvvEe~~~ 301 (370)
.|+ ++++++. |++||++|+++..|++|++.|+++||+++|||++|++|||++. .++.+-..+ ..|++|...
T Consensus 538 ~G~-~vl~~~~~~~dv~iiatGs~v~~Al~Aa~~L~~~Gi~~~Vvs~~s~kp~d~q~~~y~~~il~~~~~~~v~iE~~~- 615 (663)
T PRK12754 538 RGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAVEAGI- 615 (663)
T ss_pred cCc-EEEEecCCCCCEEEEEECHHHHHHHHHHHHHHhhCCCcEEEEcCccCcCCCCCHHHHHhcCccccccceEeeccc-
Confidence 666 7788764 9999999999999999999999999999999999999999982 333322221 348889864
Q ss_pred CCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHH
Q 017513 302 QHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRAC 360 (370)
Q Consensus 302 ~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l 360 (370)
..||.. ++..++ + .+|+ |.|+.+ +++|.+++|+|+++|++++++++
T Consensus 616 ~~~w~~----~~~~~~------~--~igi-~~FG~Sg~~~~l~~~~G~t~e~I~~~~~~~~ 663 (663)
T PRK12754 616 ADYWYK----YVGLNG------A--IVGM-TTFGESAPAELLFEEFGFTVDNVVAKAKALL 663 (663)
T ss_pred ccchhh----hccCCC------C--EEEe-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 345543 332221 2 3677 566653 57888999999999999998764
No 25
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=9.4e-45 Score=382.05 Aligned_cols=313 Identities=16% Similarity=0.133 Sum_probs=260.7
Q ss_pred ccccccHHHHHHHHHHHHHhc---CCCeEEecCCCCCCCCc---------------------cccchhHHHHhCCCcEee
Q 017513 33 AVKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGA---------------------YKISKGLLEKYGPERVLD 88 (370)
Q Consensus 33 ~~~~~~~r~a~~~~L~~l~~~---~~~ivvi~~Dl~~~~g~---------------------~~~~~~~~~~~~p~r~~~ 88 (370)
.++.+++|.||+++|.++++. +++||.+++|++.+.|. ......|+++| |+||||
T Consensus 491 ~~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~-PgRf~e 569 (891)
T PRK09405 491 GEREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESK-DGQILQ 569 (891)
T ss_pred CCCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHcC-CCcEEE
Confidence 367899999999999999995 99999999999865553 11124677888 999999
Q ss_pred chhhHHHHHH--HHHHHhcc----CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCC-CCCCC
Q 017513 89 TPITEAGFTG--IGVGAAYY----GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGA 160 (370)
Q Consensus 89 ~GIaE~~~v~--~A~GlA~~----G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~-~~~G~ 160 (370)
+||+||+|++ +|+|+|++ |++||+.+|++|..+|++|||++++++ ++.++++++. +|.+ ++.|.
T Consensus 570 ~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~--------~~~~v~iggt~gg~tl~~eG~ 641 (891)
T PRK09405 570 EGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQ--------RARGFLLGGTAGRTTLNGEGL 641 (891)
T ss_pred echhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHh--------cCCCeEEEEECccccCCCCcc
Confidence 9999999999 99999999 889999999876689999999999995 6788888885 4554 45788
Q ss_pred cc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCC--CEEEEecccccCCCCCCcccccCCCcccccCce-
Q 017513 161 QH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPD--PVVFLENELLYGESFPVSAEVLDSSFCLPIGKA- 232 (370)
Q Consensus 161 tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~--Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~- 232 (370)
|| ...+.+++|.+||++|+.|+|+.|+..+++++++ ..+ |.|++.. ..+... +..+ +++.+.+||.
T Consensus 642 qHqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~----ne~~~~-~~~p-e~~~~~igKg~ 715 (891)
T PRK09405 642 QHEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVM----NENYHQ-PAMP-EGAEEGILKGM 715 (891)
T ss_pred cCCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeC----CCCCCC-CCCC-cccccccceEE
Confidence 88 4566789999999999999999999999999876 444 7778743 111111 1111 3566788886
Q ss_pred EEeeeCC------cEEEEEechhHHHHHHHHHHHHh-cCCceeEEEeccccCCCHHHHHHHH---------hcCCeEEEE
Q 017513 233 KIEREGK------DVTITAFSKIVGLSLKAAEILAK-EGISAEVINLRSIRPLDRSTINASV---------RKTNRLVTV 296 (370)
Q Consensus 233 ~vl~~g~------dv~Iia~G~~~~~al~Aa~~L~~-~Gi~v~Vi~~~~l~P~d~~~i~~~~---------~~~~~vvvv 296 (370)
+++++|. |++|+++|.++++|++|++.|++ +||+++|+|+.|+||||.+.+.... .+++.|+++
T Consensus 716 y~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~SikpLdrd~i~~~~~~~l~~~~~~~~~~V~t~ 795 (891)
T PRK09405 716 YKLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSFNELARDGQDVERWNMLHPTEEPRVPYVTQV 795 (891)
T ss_pred EEeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhhHHHHHHHHHhhcCcccccccchhhhh
Confidence 8899876 89999999999999999999998 7999999999999999999987766 567788999
Q ss_pred ecCCCCCChH-------HHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHHhcccccc
Q 017513 297 EEGFPQHGVG-------AEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRACYRSVPMA 367 (370)
Q Consensus 297 Ee~~~~GGlg-------~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l~~~~~~~ 367 (370)
|+| .||++ +.+++.+++.. +.++.++|+ |.|+.+ .++|.++||+|+++|++++++++.+..++.
T Consensus 796 ee~--~gG~~Vtv~D~~~aVae~la~~~----p~~~~~LGv-D~FG~SGt~~~L~~~fglda~~Iv~aal~~La~~g~~~ 868 (891)
T PRK09405 796 LKG--AEGPVVAATDYMKLFAEQIRAFV----PGDYVVLGT-DGFGRSDTREALRRFFEVDAEYVVVAALKALADEGEID 868 (891)
T ss_pred hcc--cCCcEEEecchHHHHHHHHHHhC----CCCEEEEec-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCC
Confidence 988 58888 89999998753 568999999 888754 578999999999999999999997766654
No 26
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=1.4e-44 Score=380.78 Aligned_cols=313 Identities=18% Similarity=0.162 Sum_probs=259.5
Q ss_pred ccccccHHHHHHHHHHHHHh---cCCCeEEecCCCCCCCCccc---------------------cchhHHHHhCCCcEee
Q 017513 33 AVKQMMVREALNSALDEEMS---ADPKVFLMGEEVGEYQGAYK---------------------ISKGLLEKYGPERVLD 88 (370)
Q Consensus 33 ~~~~~~~r~a~~~~L~~l~~---~~~~ivvi~~Dl~~~~g~~~---------------------~~~~~~~~~~p~r~~~ 88 (370)
.++.++++.||++.|..|++ ..++||.+.+|.+.+.|.-+ ....+++.+ |+||||
T Consensus 486 ~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~-p~R~ie 564 (889)
T TIGR03186 486 EGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDT-DGQILE 564 (889)
T ss_pred CCCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccchHHHHHHhhcC-CCcEEE
Confidence 35889999999999776665 57789999999986542111 123456778 999999
Q ss_pred chhhHHHHHH--HHHHHhcc----CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCC--CCCCC
Q 017513 89 TPITEAGFTG--IGVGAAYY----GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGA--AAGVG 159 (370)
Q Consensus 89 ~GIaE~~~v~--~A~GlA~~----G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~--~~~~G 159 (370)
+||+||+|++ +|+|+|++ |++||+.+|++|..+|++|||+++ |+ ++.++++++ .+|. .+++|
T Consensus 565 ~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a-~~--------~~a~v~lvG~~aG~tTlg~eG 635 (889)
T TIGR03186 565 EGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAA-AD--------QRARGFLIGATSGKTTLGGEG 635 (889)
T ss_pred echhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHH-hh--------cCCCcEEEEECCCccCCCCCc
Confidence 9999999999 99999999 889999999876679999999988 64 578888887 4676 35689
Q ss_pred Ccc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh------CCCCEEEEecccccCCCCCCcccccCCC-cccccCc
Q 017513 160 AQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR------DPDPVVFLENELLYGESFPVSAEVLDSS-FCLPIGK 231 (370)
Q Consensus 160 ~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~------~~~Pv~i~~~~~l~~~~~~~~~~~~~~~-~~~~~Gk 231 (370)
.|| +..+++++|.+||++|+.|+|+.|+..+++++++ .++|+|||..+..+.. +.+++++ ..+..|+
T Consensus 636 ~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~~-----p~~~~~~~~~~~~gi 710 (889)
T TIGR03186 636 LQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYAQ-----PSLPEDRLDAVRRGI 710 (889)
T ss_pred ccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCC-----CCcCCCcccchhcch
Confidence 888 5677899999999999999999999999999877 5789999976543311 1223232 2244444
Q ss_pred --e-EEee----eCCcEEEEEechhHHHHHHHHHHHHhc-CCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecC---C
Q 017513 232 --A-KIER----EGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG---F 300 (370)
Q Consensus 232 --~-~vl~----~g~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~---~ 300 (370)
+ ++++ +|.|++|+++|.++++|++|++.|+++ ||+++|+|+.|+||||++.+. ++++++++++||| +
T Consensus 711 ~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~SikpLdrd~i~--a~r~~~l~t~Eeh~~~~ 788 (889)
T TIGR03186 711 LKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSFTELARDGRA--AERAQRLGDAERPPSPH 788 (889)
T ss_pred hheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCCCHhHHHHHH--HHHhCCccccccccccc
Confidence 5 6777 578999999999999999999999998 999999999999999999886 6888999999998 9
Q ss_pred CCCChHH-------------HHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHHhcccc
Q 017513 301 PQHGVGA-------------EICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRACYRSVP 365 (370)
Q Consensus 301 ~~GGlg~-------------~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l~~~~~ 365 (370)
+.|||++ .+++++.+. .+.++.++|. |.|+.+ .+.|.++|++|+++|+.+++++|.+..+
T Consensus 789 v~ggLg~~~~p~va~~D~~~avae~i~~~----~p~~~~~LG~-D~FG~Sgtr~~Lr~~fglda~~Iv~aal~~L~~~g~ 863 (889)
T TIGR03186 789 VAQALGATQGPVIAATDYVRAVPELIRAY----VPRRYVTLGT-DGFGRSDTRAALRAFFEVDRASIVIAALQALADDGL 863 (889)
T ss_pred HhhhhCCCCCCeeeecchHHHHHHHHHhh----CCCCEEEecc-CCCCCcCCHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 9999999 999999875 3568999999 888764 5789999999999999999999977665
Q ss_pred cc
Q 017513 366 MA 367 (370)
Q Consensus 366 ~~ 367 (370)
+.
T Consensus 864 ~~ 865 (889)
T TIGR03186 864 VA 865 (889)
T ss_pred CC
Confidence 54
No 27
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=3.6e-41 Score=356.31 Aligned_cols=304 Identities=18% Similarity=0.159 Sum_probs=241.2
Q ss_pred ccccccHHHHHHHHHHHHHhc---CCCeEEecCCCCCCCCc---------c------------ccchhHHHHhCCCcEee
Q 017513 33 AVKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGA---------Y------------KISKGLLEKYGPERVLD 88 (370)
Q Consensus 33 ~~~~~~~r~a~~~~L~~l~~~---~~~ivvi~~Dl~~~~g~---------~------------~~~~~~~~~~~p~r~~~ 88 (370)
.++.+++|.||+++|.++++. +++||.+++|++.+.|. | .....|++.| |+|||+
T Consensus 499 ~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~-pgR~ie 577 (896)
T PRK13012 499 GGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAK-DGQILE 577 (896)
T ss_pred CCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCC-CCcEEe
Confidence 367889999999999999987 99999999999854432 1 0123466788 999999
Q ss_pred chhhHHHHHH--HHHHHhcc----CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC-CC-CCCCCC
Q 017513 89 TPITEAGFTG--IGVGAAYY----GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GA-AAGVGA 160 (370)
Q Consensus 89 ~GIaE~~~v~--~A~GlA~~----G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-G~-~~~~G~ 160 (370)
+||+||+|++ +|+|+|++ |++||+.+|++|..+|++||+++++++ +..+++++..+ |. .+++|+
T Consensus 578 ~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~--------~~~~vlig~T~gg~tlg~dG~ 649 (896)
T PRK13012 578 EGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQ--------RARGFLLGATAGRTTLGGEGL 649 (896)
T ss_pred cchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhc--------ccCCeEEEEeCcccccCCCCC
Confidence 9999999999 99999887 679999999866689999999999873 55678888764 44 366899
Q ss_pred cc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C--CCCEEEEecccccCCCCCCcccccCC-CcccccCce
Q 017513 161 QH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D--PDPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKA 232 (370)
Q Consensus 161 tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~--~~Pv~i~~~~~l~~~~~~~~~~~~~~-~~~~~~Gk~ 232 (370)
|| ...+++++|.+||++|+.|+|+.|+..+++.+++ . +.|+|||..+.-++. +.+++. +..+..|+
T Consensus 650 THQ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~~-----p~~~~~~~~~i~kG~- 723 (896)
T PRK13012 650 QHQDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYAQ-----PALPEGAEEGILKGM- 723 (896)
T ss_pred CCcchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCCC-----CCCCccchhccccCc-
Confidence 99 3455799999999999999999999999999873 2 579999976543321 112222 34566677
Q ss_pred EEe---eeCCcEEEEEechhHHHHHHHHHHHHhc-CCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChH--
Q 017513 233 KIE---REGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVG-- 306 (370)
Q Consensus 233 ~vl---~~g~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg-- 306 (370)
+++ +++.|++|+++|+++++|++|++.|+++ ||+++|+|++|++|||.+.+.. |+|+..||++
T Consensus 724 y~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~kpLd~d~i~~-----------E~hn~~gglg~~ 792 (896)
T PRK13012 724 YRLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSFTELRRDGLAA-----------ERANLLGPAEEA 792 (896)
T ss_pred EEEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCCCHhHHHHHHH-----------HHHhhcCCCccc
Confidence 555 3467999999999999999999999999 9999999999999999997732 5555555555
Q ss_pred --H---------------------HHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHHh
Q 017513 307 --A---------------------EICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRACY 361 (370)
Q Consensus 307 --~---------------------~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l~ 361 (370)
+ .+++.+.+. .+.++.++|+ |.|+.+ .++|.++||+|+++|+++++++|.
T Consensus 793 ~~sy~~~~l~~~~~p~Va~~D~~~aVae~l~~~----~~~~~~~LGv-D~FG~Sg~~~~L~~~fGlda~~Iv~aal~~La 867 (896)
T PRK13012 793 RVPYVTQCLAGTRGPVVAATDYVRAVPEQIRAF----VPARYVTLGT-DGFGRSDTRAALRRFFEVDRHSIVLAALKALA 867 (896)
T ss_pred cccHHHHhhcccCCCeEEecchHHHHHHHHHHh----CCCCeEEEee-CCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3 566666553 3568889998 777754 578999999999999999999997
Q ss_pred cccccc
Q 017513 362 RSVPMA 367 (370)
Q Consensus 362 ~~~~~~ 367 (370)
+..++.
T Consensus 868 ~~g~~~ 873 (896)
T PRK13012 868 DDGEVE 873 (896)
T ss_pred hcCCCC
Confidence 766554
No 28
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=100.00 E-value=7.2e-42 Score=300.55 Aligned_cols=166 Identities=58% Similarity=1.028 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCC-cEeechhhHHHHHHHHHHHhccCCeeEEEcccchH
Q 017513 41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNF 119 (370)
Q Consensus 41 ~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~-r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f 119 (370)
++++++|.+++++|++++++++|++..+|++..+++|+++| |+ ||||+||+||+|+++|+|||++|++||+++.++.|
T Consensus 1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~-p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~F 79 (167)
T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKF-GPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADF 79 (167)
T ss_pred CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhC-CCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHH
Confidence 37899999999999999999999986677777789999999 88 99999999999999999999999999999434578
Q ss_pred HHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCC
Q 017513 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPD 199 (370)
Q Consensus 120 ~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~ 199 (370)
++|++|||++++|+++|+++|+.++||++++++|..+++|+||+++++++||++|||+|++|+|+.|++.++++++++++
T Consensus 80 l~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~~~ 159 (167)
T cd07036 80 ALPAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDDD 159 (167)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999997665667899999999999999999999999999999999999999999
Q ss_pred CEEEEecc
Q 017513 200 PVVFLENE 207 (370)
Q Consensus 200 Pv~i~~~~ 207 (370)
|+++++||
T Consensus 160 P~~~~e~k 167 (167)
T cd07036 160 PVIFLEHK 167 (167)
T ss_pred cEEEEecC
Confidence 99999875
No 29
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-36 Score=301.18 Aligned_cols=324 Identities=19% Similarity=0.202 Sum_probs=255.2
Q ss_pred chhhcccCCCCcccccCCCCcC-----CcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcc-ccchhHH
Q 017513 5 IRQKVAAGGGSPVARIRPVVSN-----LRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLL 78 (370)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~-~~~~~~~ 78 (370)
.++++|+..+++.+++.+.... .+.|..+++.+.+|++++++|..+....|+++..++||+.++.+. +....|.
T Consensus 317 y~~~~Pe~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~ 396 (663)
T COG0021 317 YKKKYPELAAEFERRLNGELPANWAAFLPKFEANGKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFS 396 (663)
T ss_pred HHhhChHHHHHHHHHhcccCchhHHHhhhhhcccccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCC
Confidence 4789999999999999988752 255555445589999999999999999999999999999765542 2223343
Q ss_pred -HHhCCCcEeechhhHHHHHHHHHHHhccC-CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-
Q 017513 79 -EKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA- 154 (370)
Q Consensus 79 -~~~~p~r~~~~GIaE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~- 154 (370)
+.| ++|++..||+|++|.+++.|||++| ++||..||. .|+.++..++|+.+ ++++|++++.. +++
T Consensus 397 ~~~~-~gr~i~~GVREf~M~AimNGialhGg~~pyggTFl-vFsdY~r~AiRlaA---------Lm~l~~~~V~THDSIg 465 (663)
T COG0021 397 PENY-AGRYIHFGVREFAMAAIMNGIALHGGFIPYGGTFL-VFSDYARPAVRLAA---------LMGLPVIYVFTHDSIG 465 (663)
T ss_pred CCCC-CCCeeEEeeHHHHHHHHHHhHHHhcCceeecceeh-hhHhhhhHHHHHHH---------hcCCCeEEEEecCcee
Confidence 456 7999999999999999999999996 599999987 88999999999864 48999999985 564
Q ss_pred CCCCCCcchHHH--HHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCCcccccCCCcccccCc
Q 017513 155 AAGVGAQHSHCY--AAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGK 231 (370)
Q Consensus 155 ~~~~G~tHs~~~--~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk 231 (370)
.|+||||| |+. ++.+|.+||+.|+.|+|+.|+..+++.|++. ++|+++..+|. +.|. ++..+.......
T Consensus 466 vGEDGPTH-qPiEqLa~LRaiPN~~V~RPaD~~Et~~aw~~Al~~~~gPt~LiltRQ----nlp~---l~~t~~~~~~kG 537 (663)
T COG0021 466 VGEDGPTH-QPVEQLASLRAIPNLSVIRPADANETAAAWKYALERKDGPTALILTRQ----NLPV---LERTDLEGVAKG 537 (663)
T ss_pred cCCCCCCC-CcHHHHHHhhccCCceeEecCChHHHHHHHHHHHhcCCCCeEEEEecC----CCCc---cCCCccccccCc
Confidence 57899999 544 6999999999999999999999999999995 89999986643 3222 222222222334
Q ss_pred eEEeee----CCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHH--HHHHHhcC--CeEEEEecCCCCC
Q 017513 232 AKIERE----GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRST--INASVRKT--NRLVTVEEGFPQH 303 (370)
Q Consensus 232 ~~vl~~----g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~--i~~~~~~~--~~vvvvEe~~~~G 303 (370)
++++++ +.|++||++||.|..|++|++.|+++|++++||+++|...|+.+. .++++-.. .+.|.+|-... .
T Consensus 538 aYvl~~~~~~~pd~iliAtGSEV~lAv~Aa~~L~~~~~~vrVVS~P~~~~fe~Q~~~Y~~~vL~~~v~~rvaiEa~~~-~ 616 (663)
T COG0021 538 AYVLKDSGGEDPDVILIATGSEVELAVEAAKELEAEGIKVRVVSMPSFELFEKQDEEYRESVLPGAVTARVAIEAGSA-L 616 (663)
T ss_pred cEEEeecCCCCCCEEEEecccHHHHHHHHHHHHHhcCCceEEEeccchHHHHcCCHHHHHhhccCCccceEEEEeccc-c
Confidence 677776 589999999999999999999999899999999999999998864 33443332 23588888764 5
Q ss_pred ChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHHh
Q 017513 304 GVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRACY 361 (370)
Q Consensus 304 Glg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l~ 361 (370)
||...+ +..-..+|+. .|+.+ .+.|.+.+|+|+|.|+++++++++
T Consensus 617 ~W~ky~------------g~~g~~ig~~-~FG~Sap~~~l~~~fGft~e~vv~~~~~~l~ 663 (663)
T COG0021 617 GWYKYV------------GLDGAVIGMD-SFGASAPGDELFKEFGFTVENVVAKAKSLLN 663 (663)
T ss_pred chhhhc------------CCCCcEEeec-cCcCCCCHHHHHHHhCCCHHHHHHHHHHhhC
Confidence 665421 1123456664 56543 578888999999999999998873
No 30
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=2.5e-36 Score=263.29 Aligned_cols=153 Identities=29% Similarity=0.462 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHH
Q 017513 41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFS 120 (370)
Q Consensus 41 ~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~ 120 (370)
++++++|.+++++||+++++++|++.+++ +.+|.++| |+||+|+||+|++|+++|+|+|+.|++||+++| ++|+
T Consensus 1 ~~~~~~l~~~~~~~~~~v~~~~Dl~~~~~----~~~~~~~~-p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~~-~~f~ 74 (156)
T cd07033 1 KAFGEALLELAKKDPRIVALSADLGGSTG----LDKFAKKF-PDRFIDVGIAEQNMVGIAAGLALHGLKPFVSTF-SFFL 74 (156)
T ss_pred ChHHHHHHHHHhhCCCEEEEECCCCCCCC----cHHHHHhC-CCCeEEeChhHHHHHHHHHHHHHCCCeEEEEEC-HHHH
Confidence 36899999999999999999999985433 67899999 999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCC-CCCCcc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC
Q 017513 121 MQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAA-GVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD 197 (370)
Q Consensus 121 ~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~-~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~ 197 (370)
+|++|||++++|+ +++||+++++ +|..+ ++|+|| +++++++++++||++|++|+|++|++.+++++++.
T Consensus 75 ~ra~dqi~~~~a~--------~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~ 146 (156)
T cd07033 75 QRAYDQIRHDVAL--------QNLPVKFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEY 146 (156)
T ss_pred HHHHHHHHHHHhc--------cCCCeEEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhC
Confidence 9999999999994 6799999986 45544 689998 56778999999999999999999999999999999
Q ss_pred CCCEEEEecc
Q 017513 198 PDPVVFLENE 207 (370)
Q Consensus 198 ~~Pv~i~~~~ 207 (370)
++|+|+|++|
T Consensus 147 ~~P~~irl~~ 156 (156)
T cd07033 147 DGPVYIRLPR 156 (156)
T ss_pred CCCEEEEeeC
Confidence 9999999763
No 31
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=7.4e-35 Score=308.86 Aligned_cols=292 Identities=18% Similarity=0.197 Sum_probs=236.9
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEecCCCCC--------------CCCccccchhHHHHhCCCcEeechhhHHHHHHHH
Q 017513 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGE--------------YQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG 100 (370)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~--------------~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A 100 (370)
+.++|..|...++.+++++|++|+++|+|++. .+|+|+.+.+|.++|++.|++|++|+|.+++|++
T Consensus 584 ~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~~G~~ 663 (929)
T TIGR00239 584 KLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESVLGFE 663 (929)
T ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHHHHHHH
Confidence 34789999999999999999999999999985 5666799999999999999999999999999999
Q ss_pred HHHhccCCeeE--EEcccchHHH---HHHHHHHHH-hhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHH--cc
Q 017513 101 VGAAYYGLKPV--VEFMTFNFSM---QAIDHIINS-AAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWY--AS 172 (370)
Q Consensus 101 ~GlA~~G~rp~--~~t~~~~f~~---ra~dqi~~~-~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~--~~ 172 (370)
.|+|+.|.+|+ ++.++.+|+. .++|||.+. .+++++|+ ++|++.+.|..++.+.+||+..+++| .+
T Consensus 664 ~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~s------glv~~~p~G~~g~g~~hsS~~~E~~lql~~ 737 (929)
T TIGR00239 664 YGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMS------GLVMLLPHGYEGQGPEHSSGRLERFLQLAA 737 (929)
T ss_pred HhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCcc------CeEEEecCcCCCCCchhhccCHHHHHHHhC
Confidence 99999998875 9999999997 779999888 58887665 38888888866556677788889999 78
Q ss_pred CCCcEEEeeCCHHHHHHHHH-HHHhC-CCCEEEEecccccCCCCC--CcccccCCCcccccCceE-----EeeeCCcEEE
Q 017513 173 VPGLKVLSPYSSEDARGLLK-AAIRD-PDPVVFLENELLYGESFP--VSAEVLDSSFCLPIGKAK-----IEREGKDVTI 243 (370)
Q Consensus 173 iP~~~V~~P~d~~e~~~~l~-~a~~~-~~Pv~i~~~~~l~~~~~~--~~~~~~~~~~~~~~Gk~~-----vl~~g~dv~I 243 (370)
.|||+|+.|++|.|++.+|+ ++++. ++|+++++||.||+.+.. ...++++..|..+++... +.+++.+.+|
T Consensus 738 ~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~~f~~~i~~~~~~~~~~~~~~v~~vv 817 (929)
T TIGR00239 738 EQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEGTFQPVIGEIEESGLSLDPEGVKRLV 817 (929)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCCCcccccccccccccccCccCCcEEE
Confidence 99999999999999999999 79997 899999999999975421 113455555666664321 2233455566
Q ss_pred EEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC---eEEEEecCCCCCChHHHHHHHHHhhccCC
Q 017513 244 TAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN---RLVTVEEGFPQHGVGAEICASVIEESFGY 320 (370)
Q Consensus 244 ia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~---~vvvvEe~~~~GGlg~~i~~~l~~~~~~~ 320 (370)
+++| ++..++++ +.++++|++++|||+++|+|||.++|.++++|+. ++|++.|...+.|-...|...|.+....
T Consensus 818 ~~sg-~v~~~l~~-~~~~~~~~~v~iirle~L~Pf~~~~i~~sl~k~~~~~~~vw~qEep~n~Gaw~~v~~rl~~~l~~- 894 (929)
T TIGR00239 818 LCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQYPNLKEIVWCQEEPLNMGAWYYSQPHLREVIPE- 894 (929)
T ss_pred EECc-hHHHHHHH-HHHhcCCCCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeccCCCCCCHHHHHHHHHHHhcc-
Confidence 6666 66666666 6777789999999999999999999999999996 7899988888888888888877653210
Q ss_pred CCCCEEEEecCCCCCC
Q 017513 321 LDAPVERIAGADVPMP 336 (370)
Q Consensus 321 l~~~~~~ig~~d~~~~ 336 (370)
..++..+|-+....|
T Consensus 895 -~~~l~y~gR~~~asp 909 (929)
T TIGR00239 895 -GVSVRYAGRPASASP 909 (929)
T ss_pred -CCceEEeCCCCCCCC
Confidence 135777776655444
No 32
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=7.6e-35 Score=310.07 Aligned_cols=292 Identities=20% Similarity=0.185 Sum_probs=240.6
Q ss_pred cccccHHHHHHHHHHHHHhcCCCeEEecCCCCC--------------CCCccccchhHHHHhCCCcEeechhhHHHHHHH
Q 017513 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGE--------------YQGAYKISKGLLEKYGPERVLDTPITEAGFTGI 99 (370)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~--------------~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~ 99 (370)
.+.++|..|...++..++++|++|+++|+|++. .+|.|+.+.+|.++|+++|++|++|+|.+++|+
T Consensus 581 ~~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~ 660 (924)
T PRK09404 581 EKPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGF 660 (924)
T ss_pred CCCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHH
Confidence 345789999999999999999999999999974 678899999999999999999999999999999
Q ss_pred HHHHhccCCee--EEEcccchHHH---HHHHHHHHHh-hhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccC
Q 017513 100 GVGAAYYGLKP--VVEFMTFNFSM---QAIDHIINSA-AKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASV 173 (370)
Q Consensus 100 A~GlA~~G~rp--~~~t~~~~f~~---ra~dqi~~~~-a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~i 173 (370)
+.|+|+.|.+| +++.++.+|+. .++||+.+.. +++++++ ++|++.+.|..++.+.+||+..+++|...
T Consensus 661 ~~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~s------glv~~~p~G~~g~g~~hsS~~~E~~l~~~ 734 (924)
T PRK09404 661 EYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLS------GLVMLLPHGYEGQGPEHSSARLERFLQLC 734 (924)
T ss_pred HHHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCcc------CeEEEecCcCCCCChhhhccCHHHHHHhC
Confidence 99999999975 99999999987 6799999886 8877654 48888887855555566777889999665
Q ss_pred --CCcEEEeeCCHHHHHHHHHHHH-hC-CCCEEEEecccccCCCCCC--cccccCCCcccccCceEEeeeCCcE--EEEE
Q 017513 174 --PGLKVLSPYSSEDARGLLKAAI-RD-PDPVVFLENELLYGESFPV--SAEVLDSSFCLPIGKAKIEREGKDV--TITA 245 (370)
Q Consensus 174 --P~~~V~~P~d~~e~~~~l~~a~-~~-~~Pv~i~~~~~l~~~~~~~--~~~~~~~~~~~~~Gk~~vl~~g~dv--~Iia 245 (370)
|||+|+.|++|.|++.+|+.++ +. ++|+++++||.||+.+... ..+++...+..++++.. .+++.|+ +|||
T Consensus 735 ~~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~~~f~~vi~~~~-~~~~~~v~r~iv~ 813 (924)
T PRK09404 735 AEDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEGSFQPVIGDID-ELDPKKVKRVVLC 813 (924)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCCHHHcCCCCceeeccccc-ccCccceeEEEEE
Confidence 7999999999999999999864 66 4999999999999753211 12333334555566544 5677889 7999
Q ss_pred echhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC---eEEEEecCCCCCChHHHHHHHHHhhccCCCC
Q 017513 246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN---RLVTVEEGFPQHGVGAEICASVIEESFGYLD 322 (370)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~---~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~ 322 (370)
||.+++.++++++.+.. .++.|||+++|+|||.++|.++++|++ ++|+|+|...+.|.+..|...+..... ..
T Consensus 814 ~Gk~~~~~~~a~~~~~~--~~v~ii~le~L~P~~~~~i~~~v~k~~~~~~~v~vqEe~~n~G~~~~~~~~~~~~~~--~~ 889 (924)
T PRK09404 814 SGKVYYDLLEARRKRGI--DDVAIVRIEQLYPFPHEELAAELAKYPNAKEVVWCQEEPKNQGAWYFIQHHLEEVLP--EG 889 (924)
T ss_pred cCHHHHHHHHHHHhCCC--CCEEEEEeeeeCCCCHHHHHHHHHhcCCCCeEEEEeeCCCCCCcHHHHHHHHHHHhc--cC
Confidence 99999999999986533 499999999999999999999999984 899999988999999999888865311 01
Q ss_pred CCEEEEecCCCCCC
Q 017513 323 APVERIAGADVPMP 336 (370)
Q Consensus 323 ~~~~~ig~~d~~~~ 336 (370)
.++..+|-+....|
T Consensus 890 ~~~~y~gR~~~asp 903 (924)
T PRK09404 890 QKLRYAGRPASASP 903 (924)
T ss_pred CeeEEECCCCcCCC
Confidence 35777776655444
No 33
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=100.00 E-value=2.9e-34 Score=255.64 Aligned_cols=166 Identities=35% Similarity=0.570 Sum_probs=134.7
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccC--CeeEE
Q 017513 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG--LKPVV 112 (370)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G--~rp~~ 112 (370)
|++++|++++++|.+++++|++++++++|++ +|++..+.++...++|+||||+||+|++|+++|+|||++| ++|++
T Consensus 1 ~k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~--~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~ 78 (178)
T PF02779_consen 1 KKISMRDAFGEALAELAEEDPRVVVIGADLG--GGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVE 78 (178)
T ss_dssp -EEEHHHHHHHHHHHHHHHTTTEEEEESSTH--HHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEE
T ss_pred CCccHHHHHHHHHHHHHhhCCCEEEEECCcC--cchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeE
Confidence 5789999999999999999999999999998 4555444555566667899999999999999999999999 67777
Q ss_pred EcccchHHH----HHHHHHHHHhhhccccCCCCcccCEEEEeCCCC-CCCCCCcc-hHHHHHHHccCCCcEEEeeCCHHH
Q 017513 113 EFMTFNFSM----QAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA-AAGVGAQH-SHCYAAWYASVPGLKVLSPYSSED 186 (370)
Q Consensus 113 ~t~~~~f~~----ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e 186 (370)
.+|+ .|+. |+++|+++++++ .++||.++.++|. .+++|+|| +++++++|+++|||+|++|+|+.|
T Consensus 79 ~~f~-~F~~~~q~r~~~~~~~~~~~--------~~~~v~v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e 149 (178)
T PF02779_consen 79 STFA-DFLTPAQIRAFDQIRNDMAY--------GQLPVPVGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAE 149 (178)
T ss_dssp EEEG-GGGGGGHHHHHHHHHHHHHH--------HTS-EEEEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHH
T ss_pred eecc-ccccccchhhhhhhhhhhhc--------ccceecceeecCcccccccccccccccccccccccccccccCCCHHH
Confidence 7765 5666 999999999886 4556553334444 45677776 788899999999999999999999
Q ss_pred HHHHHHHHHh--CCCCEEEEecccccC
Q 017513 187 ARGLLKAAIR--DPDPVVFLENELLYG 211 (370)
Q Consensus 187 ~~~~l~~a~~--~~~Pv~i~~~~~l~~ 211 (370)
++.+++++++ +++|+|||++|.+++
T Consensus 150 ~~~~l~~a~~~~~~~P~~ir~~r~~~~ 176 (178)
T PF02779_consen 150 AKGLLRAAIRRESDGPVYIREPRGLYP 176 (178)
T ss_dssp HHHHHHHHHHSSSSSEEEEEEESSEES
T ss_pred HHHHHHHHHHhCCCCeEEEEeeHHhCC
Confidence 9999999999 689999999988765
No 34
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=99.97 E-value=6.3e-30 Score=225.54 Aligned_cols=155 Identities=37% Similarity=0.556 Sum_probs=129.9
Q ss_pred cHHHHHHHHHHHHHhcCC-CeEEecCCCCCCCCccccchhHHHHhCCC-------cEeechhhHHHHHHHHHHHhccCCe
Q 017513 38 MVREALNSALDEEMSADP-KVFLMGEEVGEYQGAYKISKGLLEKYGPE-------RVLDTPITEAGFTGIGVGAAYYGLK 109 (370)
Q Consensus 38 ~~r~a~~~~L~~l~~~~~-~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~-------r~~~~GIaE~~~v~~A~GlA~~G~r 109 (370)
+++++++++|.+++++|+ +++++++|++.+++. . ..+.| |+ ||+|+||+|++|+++|+|+|++|++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~~----~-~~~~~-~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~ 74 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTGL----D-RGGVF-PDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLR 74 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcCC----C-cCCcc-CCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCC
Confidence 478999999999999955 999999999854332 1 13445 55 5999999999999999999999999
Q ss_pred eEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCC-CCCCCCCcc-hHHHHHHHccCCCcEEEeeCCHHHH
Q 017513 110 PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNG-AAAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDA 187 (370)
Q Consensus 110 p~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G-~~~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~ 187 (370)
||++++++ |+.|++||+++++++ .++|+++....| ..+++|+|| +++++++++++||++|++|+|++|+
T Consensus 75 pi~~~~~~-f~~~a~~~~~~~~~~--------~~~~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~ 145 (168)
T smart00861 75 PVVAIFFT-FFDRAKDQIRSDGAM--------GRVPVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEA 145 (168)
T ss_pred cEEEeeHH-HHHHHHHHHHHhCcc--------cCCCEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHH
Confidence 99999985 555999999998872 368888888655 455678865 7788999999999999999999999
Q ss_pred HHHHHHHHhC-CCCEEEEecc
Q 017513 188 RGLLKAAIRD-PDPVVFLENE 207 (370)
Q Consensus 188 ~~~l~~a~~~-~~Pv~i~~~~ 207 (370)
+.++++++++ ++|+|||.++
T Consensus 146 ~~~l~~a~~~~~~p~~i~~~~ 166 (168)
T smart00861 146 KGLLRAAIRRDDGPPVIRLER 166 (168)
T ss_pred HHHHHHHHhCCCCCEEEEecC
Confidence 9999999986 6899998653
No 35
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.92 E-value=1.2e-22 Score=198.77 Aligned_cols=247 Identities=17% Similarity=0.147 Sum_probs=175.4
Q ss_pred CCcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCC
Q 017513 83 PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGA 160 (370)
Q Consensus 83 p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~ 160 (370)
...|++ .-+|.+++++|.|+|.+|.|.++.|.++ .+..+++.+.... +.++|++++. ++|++.+.
T Consensus 48 ~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~taTSg~-Gl~lm~E~l~~a~---------~~e~P~v~v~v~R~~p~~g~-- 114 (352)
T PRK07119 48 GGVFVQ-AESEVAAINMVYGAAATGKRVMTSSSSP-GISLKQEGISYLA---------GAELPCVIVNIMRGGPGLGN-- 114 (352)
T ss_pred CCEEEe-eCcHHHHHHHHHHHHhhCCCEEeecCcc-hHHHHHHHHHHHH---------HccCCEEEEEeccCCCCCCC--
Confidence 356788 8999999999999999999999999765 5556778775433 4789998886 56665543
Q ss_pred cc-hHHHHHHHcc-----CCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccccCC--CCCCc----------c
Q 017513 161 QH-SHCYAAWYAS-----VPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLYGE--SFPVS----------A 218 (370)
Q Consensus 161 tH-s~~~~a~~~~-----iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~--~~~~~----------~ 218 (370)
++ .|.|.-+... .-+|.|++|+|+||++++..+|++ .+.||+++.+..+-.. .+.+. +
T Consensus 115 t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~ 194 (352)
T PRK07119 115 IQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKRPLPPKD 194 (352)
T ss_pred CcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhcccCCCC
Confidence 44 4555322221 446999999999999999999986 4789999976432100 00000 0
Q ss_pred -cccCCC--ccc-----------------c----c-------CceEEe-eeCCcEEEEEechhHHHHHHHHHHHHhcCCc
Q 017513 219 -EVLDSS--FCL-----------------P----I-------GKAKIE-REGKDVTITAFSKIVGLSLKAAEILAKEGIS 266 (370)
Q Consensus 219 -~~~~~~--~~~-----------------~----~-------Gk~~vl-~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~ 266 (370)
.+++.. ... . + ...+.. .++.|++||+||+++..+++|++.|+++|++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L~~~Gi~ 274 (352)
T PRK07119 195 WAVTGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMAREEGIK 274 (352)
T ss_pred CccCCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHHHHHcCCe
Confidence 000000 000 0 0 000111 2468999999999999999999999999999
Q ss_pred eeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhC
Q 017513 267 AEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAV 346 (370)
Q Consensus 267 v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~g 346 (370)
++|++++++||||.+.|.++++++++|+|+|++. |.|..+|...+.. ..++..++..+ ...
T Consensus 275 v~vi~~~~l~Pfp~~~i~~~l~~~k~VivvE~n~--g~l~~ei~~~~~~------~~~~~~i~k~~-----------G~~ 335 (352)
T PRK07119 275 VGLFRPITLWPFPEKALEELADKGKGFLSVEMSM--GQMVEDVRLAVNG------KKPVEFYGRMG-----------GMV 335 (352)
T ss_pred EEEEeeceecCCCHHHHHHHHhCCCEEEEEeCCc--cHHHHHHHHHhCC------CCceeEEeccC-----------CEe
Confidence 9999999999999999999999999999999983 7788877755532 12333444321 124
Q ss_pred CCHHHHHHHHHHHHh
Q 017513 347 PQVEDIVRAAKRACY 361 (370)
Q Consensus 347 l~~~~I~~~i~~~l~ 361 (370)
++++.|.+.++++++
T Consensus 336 ~~~~~i~~~~~~~~~ 350 (352)
T PRK07119 336 PTPEEILEKIKEILG 350 (352)
T ss_pred CCHHHHHHHHHHHhc
Confidence 789999999998874
No 36
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=99.91 E-value=2.9e-25 Score=186.18 Aligned_cols=123 Identities=42% Similarity=0.622 Sum_probs=112.6
Q ss_pred CceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHH
Q 017513 230 GKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309 (370)
Q Consensus 230 Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i 309 (370)
||+.++++|.|++|||||++++.|++|++.|+++|++++|||++|++|||.+.|.++++++++++|+|||+..||+|+.|
T Consensus 1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvvee~~~~gg~g~~i 80 (124)
T PF02780_consen 1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTIKPFDEEALLESLKKTGRVVVVEEHYKIGGLGSAI 80 (124)
T ss_dssp TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHSETCESEEEEHSSH
T ss_pred CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEEecccccchHHHHHHhccccccccccccccHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCEEEEecCCCCCCC-HHHHHHHhCCCHHHH
Q 017513 310 CASVIEESFGYLDAPVERIAGADVPMPY-AANLERMAVPQVEDI 352 (370)
Q Consensus 310 ~~~l~~~~~~~l~~~~~~ig~~d~~~~~-~~~l~~~~gl~~~~I 352 (370)
++.+.++++..+..++.++|.+|.|.++ ..++.+.+|+|+++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~gl~~e~I 124 (124)
T PF02780_consen 81 AEYLAENGFNDLDAPVKRLGVPDEFIPHGRAELLEAFGLDAESI 124 (124)
T ss_dssp HHHHHHHTTTGEEEEEEEEEE-SSSHHSSHHHHHHHTTHSHHHH
T ss_pred HHHHHHhCCccCCCCeEEEEECCCcccCcHHHHHHHCcCCCCcC
Confidence 9999997764344789999999999875 567788899999986
No 37
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.90 E-value=9.2e-22 Score=194.03 Aligned_cols=246 Identities=20% Similarity=0.229 Sum_probs=173.1
Q ss_pred CcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCCc
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQ 161 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~t 161 (370)
..|+++- +|.+++++|.|+|.+|.|.++.|.++.|+ .+.+++-...+ .++|+|++. |.|++.|..+.
T Consensus 49 ~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaTSg~Gl~-lm~E~~~~a~~---------~e~P~Viv~~~R~gp~tg~p~~ 117 (376)
T PRK08659 49 GVFIQME-DEIASMAAVIGASWAGAKAMTATSGPGFS-LMQENIGYAAM---------TETPCVIVNVQRGGPSTGQPTK 117 (376)
T ss_pred CEEEEeC-chHHHHHHHHhHHhhCCCeEeecCCCcHH-HHHHHHHHHHH---------cCCCEEEEEeecCCCCCCCCCC
Confidence 4677777 99999999999999999999999886665 56788765543 689998887 56777666555
Q ss_pred chHHHH--HHHcc--CCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccccCC--CC------CCc-------c
Q 017513 162 HSHCYA--AWYAS--VPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLYGE--SF------PVS-------A 218 (370)
Q Consensus 162 Hs~~~~--a~~~~--iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~--~~------~~~-------~ 218 (370)
++|.|. ..+.. .-++.|++|+|+||++++...|++ ++.||+++.+..+-.. .+ .+. .
T Consensus 118 ~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~ 197 (376)
T PRK08659 118 PAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIERKLPK 197 (376)
T ss_pred cCcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhccccccccCC
Confidence 566664 22221 234789999999999999999986 4789999965321000 00 000 0
Q ss_pred ---------c-----c-----cCCCcc--------------------c---------cc-------CceEEee-eCCcEE
Q 017513 219 ---------E-----V-----LDSSFC--------------------L---------PI-------GKAKIER-EGKDVT 242 (370)
Q Consensus 219 ---------~-----~-----~~~~~~--------------------~---------~~-------Gk~~vl~-~g~dv~ 242 (370)
. + +..... . .+ +..+... ++.|++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ad~~ 277 (376)
T PRK08659 198 VPPEAYKPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLEDAEVV 277 (376)
T ss_pred CCccccCCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCCCCEE
Confidence 0 0 000000 0 00 0011112 578999
Q ss_pred EEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCC
Q 017513 243 ITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLD 322 (370)
Q Consensus 243 Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~ 322 (370)
||+||+++..+++|++.|+++|++++++++++++|||.+.|.+.++++++|+|||+| .|.+..++...+.. .
T Consensus 278 iv~~Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~l~Pfp~~~i~~~~~~~k~VivvEe~--~g~l~~el~~~~~~------~ 349 (376)
T PRK08659 278 VVAYGSVARSARRAVKEAREEGIKVGLFRLITVWPFPEEAIRELAKKVKAIVVPEMN--LGQMSLEVERVVNG------R 349 (376)
T ss_pred EEEeCccHHHHHHHHHHHHhcCCceEEEEeCeecCCCHHHHHHHHhcCCEEEEEeCC--HHHHHHHHHHHhCC------C
Confidence 999999999999999999999999999999999999999999999999999999999 46666666655532 1
Q ss_pred CCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 017513 323 APVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA 359 (370)
Q Consensus 323 ~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~ 359 (370)
.++..++..+ ...+++++|.+.++++
T Consensus 350 ~~~~~i~~~~-----------G~~~~~~ei~~~~~~~ 375 (376)
T PRK08659 350 AKVEGINKIG-----------GELITPEEILEKIKEV 375 (376)
T ss_pred CCeeEEeccC-----------CCcCCHHHHHHHHHhh
Confidence 1233333211 1237888888887764
No 38
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.90 E-value=4.2e-22 Score=207.90 Aligned_cols=249 Identities=17% Similarity=0.227 Sum_probs=180.3
Q ss_pred CcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcc-
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQH- 162 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tH- 162 (370)
+-++....+|.+++.+|+|+|.+|.|.+++|..+ .+..+.|++.. +++. | .++|+|++..++++ .++++
T Consensus 46 ~~~~~~~~~E~~a~~~~~GAs~aG~ra~t~ts~~-Gl~~~~e~l~~-~~~~-----g-~~~~iV~~~~~~~g--p~~~~~ 115 (595)
T TIGR03336 46 GVYFEWSVNEKVAVEVAAGAAWSGLRAFCTMKHV-GLNVAADPLMT-LAYT-----G-VKGGLVVVVADDPS--MHSSQN 115 (595)
T ss_pred cEEEEECcCHHHHHHHHHHHHhcCcceEEEccCC-chhhhHHHhhh-hhhh-----c-CcCceEEEEccCCC--Cccchh
Confidence 3567888899999999999999999999999764 55577888864 4432 2 48899988764422 12444
Q ss_pred hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccccCC--CC-----CCcccc--cCCC---cc
Q 017513 163 SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLYGE--SF-----PVSAEV--LDSS---FC 226 (370)
Q Consensus 163 s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~--~~-----~~~~~~--~~~~---~~ 226 (370)
.|.|. ++....++.|++|+|+||++++..+|++ ++.||+++.+..+-.. .+ +..... +..+ +.
T Consensus 116 ~q~d~-~~~~~~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~ 194 (595)
T TIGR03336 116 EQDTR-HYAKFAKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYV 194 (595)
T ss_pred hHhHH-HHHHhcCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcC
Confidence 45553 2333357889999999999999999986 5799999976432100 00 000000 0000 00
Q ss_pred c-c--------------------cCc--e-EEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHH
Q 017513 227 L-P--------------------IGK--A-KIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRST 282 (370)
Q Consensus 227 ~-~--------------------~Gk--~-~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~ 282 (370)
. + ... + .+..+++|++||+||++++.+++|++.| |++++|++++++||||++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i~Pld~~~ 271 (595)
T TIGR03336 195 MVPAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFTYPVPEGL 271 (595)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCCCCCCHHH
Confidence 0 0 000 1 1223468999999999999999988765 9999999999999999999
Q ss_pred HHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 017513 283 INASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA 359 (370)
Q Consensus 283 i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~ 359 (370)
|++.++++++|+|+|||. +++++.+...+.+. +.++.++|++|.|++ +..+||++.|.++++++
T Consensus 272 i~~~~~~~~~vivvEe~~--~~~~~~~~~~~~~~-----~~~v~~~G~~d~fi~------~~~~Ld~~~i~~~i~~~ 335 (595)
T TIGR03336 272 VEEFLSGVEEVLVVEELE--PVVEEQVKALAGTA-----GLNIKVHGKEDGFLP------REGELNPDIVVNALAKF 335 (595)
T ss_pred HHHHHhcCCeEEEEeCCc--cHHHHHHHHHHHhc-----CCCeEEecccCCccC------cccCcCHHHHHHHHHHh
Confidence 999999999999999997 55666555555432 237899999999887 34689999999999886
No 39
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.90 E-value=7.3e-22 Score=194.29 Aligned_cols=243 Identities=16% Similarity=0.131 Sum_probs=172.7
Q ss_pred cEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCCcc
Q 017513 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQH 162 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~tH 162 (370)
.|+.+ -+|.+++++|+|+|.+|.|.+++|.++.|+ .+.+++-... +.++|+|++. |+|+++|.....
T Consensus 49 ~~vq~-E~E~aA~~~a~GAs~aG~Ra~taTSg~G~~-lm~E~~~~a~---------~~e~P~V~~~~~R~GpstG~p~~~ 117 (375)
T PRK09627 49 TFIQM-EDEISGISVALGASMSGVKSMTASSGPGIS-LKAEQIGLGF---------IAEIPLVIVNVMRGGPSTGLPTRV 117 (375)
T ss_pred EEEEc-CCHHHHHHHHHHHHhhCCCEEeecCCchHH-HHhhHHHHHH---------hccCCEEEEEeccCCCcCCCCCcc
Confidence 34544 599999999999999999999999887766 4567776443 4799999986 568887765555
Q ss_pred hHHHHHHHc-----cCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccccCC--CCC------C---------
Q 017513 163 SHCYAAWYA-----SVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLYGE--SFP------V--------- 216 (370)
Q Consensus 163 s~~~~a~~~-----~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~--~~~------~--------- 216 (370)
.|.|....+ ..| +.|++|+|+||++++...|++ +..||+++.+..+-.. .+. +
T Consensus 118 ~q~D~~~~~~~~hgd~~-~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~~ 196 (375)
T PRK09627 118 AQGDVNQAKNPTHGDFK-SIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRKE 196 (375)
T ss_pred chHHHHHHhcCCCCCcC-cEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhcccccccccc
Confidence 666643333 344 569999999999999999986 5789999965321000 000 0
Q ss_pred -ccc---c----cCCCcc-----------c-----------------------------c-------cCceEEee-eCCc
Q 017513 217 -SAE---V----LDSSFC-----------L-----------------------------P-------IGKAKIER-EGKD 240 (370)
Q Consensus 217 -~~~---~----~~~~~~-----------~-----------------------------~-------~Gk~~vl~-~g~d 240 (370)
.++ . .+++.+ + . ....+... +++|
T Consensus 197 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~dAd 276 (375)
T PRK09627 197 FDGDKKDYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDDAE 276 (375)
T ss_pred ccCCcccccCCccCCCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCCCC
Confidence 000 0 000000 0 0 00011111 3588
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCC
Q 017513 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGY 320 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~ 320 (370)
++||+||+....+.+|++.|+++|++++++.+++++|||.+.|++.+++.++|+|+|++. |.|..+|...+..
T Consensus 277 ~~IV~~GSt~~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~viVvE~n~--Gql~~~v~~~~~~----- 349 (375)
T PRK09627 277 ILIIAYGSVSLSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGDKFEKILVIELNM--GQYLEEIERVMQR----- 349 (375)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHhcCCEEEEEcCCh--HHHHHHHHHHhCC-----
Confidence 999999999999999999999999999999999999999999999999999999999986 8888888777632
Q ss_pred CCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 017513 321 LDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRA 359 (370)
Q Consensus 321 l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~ 359 (370)
.++..++..+ ...+++++|.++++++
T Consensus 350 --~~~~~i~~~~-----------G~~~~~~~i~~~i~~~ 375 (375)
T PRK09627 350 --DDFHFLGKAN-----------GRPISPSEIIAKVKEL 375 (375)
T ss_pred --CCceEEeeeC-----------CCcCCHHHHHHHHHhC
Confidence 1222332211 1236888888888763
No 40
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=99.87 E-value=6.1e-20 Score=183.00 Aligned_cols=252 Identities=17% Similarity=0.211 Sum_probs=174.6
Q ss_pred cEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCCcc
Q 017513 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQH 162 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~tH 162 (370)
.|+.+ -+|.+++++|.|+|.+|.|.+++|.++.+ ..+.|.|.... ..++|+|++. ++|++ +.....
T Consensus 58 ~~vq~-E~E~~A~~~~~GAs~aGaRa~TaTS~~Gl-~lm~E~l~~aa---------~~~~P~V~~~~~R~~~~-~~~i~~ 125 (407)
T PRK09622 58 EFVMV-ESEHAAMSACVGAAAAGGRVATATSSQGL-ALMVEVLYQAS---------GMRLPIVLNLVNRALAA-PLNVNG 125 (407)
T ss_pred EEEee-ccHHHHHHHHHHHHhhCcCEEeecCcchH-HHHhhHHHHHH---------HhhCCEEEEEeccccCC-CcCCCc
Confidence 36664 49999999999999999999999977555 45678876433 3789988887 44444 333333
Q ss_pred hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C--CCCEEEEecccc--c-CCCC-------------------
Q 017513 163 SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D--PDPVVFLENELL--Y-GESF------------------- 214 (370)
Q Consensus 163 s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~--~~Pv~i~~~~~l--~-~~~~------------------- 214 (370)
.|.|. +.....+|.+++|+|+||++++...|++ + ..||+++.+..+ + .+.+
T Consensus 126 d~~D~-~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~ 204 (407)
T PRK09622 126 DHSDM-YLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKN 204 (407)
T ss_pred hHHHH-HHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccc
Confidence 45553 3334568999999999999999999986 3 689999865331 0 0000
Q ss_pred -------CCc-ccccCCCccc----------------------c----cCc----eEEe-eeCCcEEEEEechhHHHHHH
Q 017513 215 -------PVS-AEVLDSSFCL----------------------P----IGK----AKIE-REGKDVTITAFSKIVGLSLK 255 (370)
Q Consensus 215 -------~~~-~~~~~~~~~~----------------------~----~Gk----~~vl-~~g~dv~Iia~G~~~~~al~ 255 (370)
|.. +....+++.+ . .|. .+.. .+++|++||++|+++..+++
T Consensus 205 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~e 284 (407)
T PRK09622 205 SMLDFDKPVTYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIV 284 (407)
T ss_pred cccCCCCCccCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHH
Confidence 000 0000000000 0 111 1111 14689999999999999999
Q ss_pred HHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCC-CCCE---EEEecC
Q 017513 256 AAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYL-DAPV---ERIAGA 331 (370)
Q Consensus 256 Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l-~~~~---~~ig~~ 331 (370)
|++.|+++|+++++|++++++|||.+.|.+.++++++|+|+|++...||+|+.+.+.+..-..... ..++ ..+|..
T Consensus 285 a~~~L~~~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev~~al~~~~~~~~~~v~~~~~g~g 364 (407)
T PRK09622 285 AAKEMRKEGIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEVTSAVYQTQGTKHPVVSNYIYGLG 364 (407)
T ss_pred HHHHHHhCCCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHHHHHHhccCcCCCceEeeeEECCC
Confidence 999999999999999999999999999999999999999999999999999877666543211000 1232 222220
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q 017513 332 DVPMPYAANLERMAVPQVEDIVRAAKRACY 361 (370)
Q Consensus 332 d~~~~~~~~l~~~~gl~~~~I~~~i~~~l~ 361 (370)
...+++++|.+.++++.+
T Consensus 365 ------------G~~~t~~~i~~~~~~l~~ 382 (407)
T PRK09622 365 ------------GRDMTIAHLCEIFEELNE 382 (407)
T ss_pred ------------CCCCCHHHHHHHHHHHHh
Confidence 124788998888887764
No 41
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.86 E-value=2e-19 Score=177.75 Aligned_cols=209 Identities=14% Similarity=0.182 Sum_probs=151.9
Q ss_pred eechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCCcchH
Q 017513 87 LDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQHSH 164 (370)
Q Consensus 87 ~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~tHs~ 164 (370)
+-..-+|.+++++|.|+|.+|.|.+++|.++.| ..+.|++.. ++ +.++|+|++. |+|+ ++......|
T Consensus 52 ~~~~E~E~aA~~~aiGAs~aGaRa~TaTSg~Gl-~lm~E~l~~-aa--------~~~lPiVi~~~~R~~p-~~~~~~~~q 120 (390)
T PRK08366 52 YVPVESEHSAMAACIGASAAGARAFTATSAQGL-ALMHEMLHW-AA--------GARLPIVMVDVNRAMA-PPWSVWDDQ 120 (390)
T ss_pred EEEeCCHHHHHHHHHHHHhhCCCeEeeeCcccH-HHHhhHHHH-HH--------hcCCCEEEEEeccCCC-CCCCCcchh
Confidence 334569999999999999999999999977555 467788764 33 3689999886 5566 343333356
Q ss_pred HHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccccc-------------------CC---------
Q 017513 165 CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY-------------------GE--------- 212 (370)
Q Consensus 165 ~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~-------------------~~--------- 212 (370)
.|. ++....++.+++|+|+||++++...|++ ...||+++.+..+. +.
T Consensus 121 ~D~-~~~~d~g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~ 199 (390)
T PRK08366 121 TDS-LAQRDTGWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLAD 199 (390)
T ss_pred hHH-HHHhhcCEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCC
Confidence 664 3334458999999999999999999986 57999999753110 00
Q ss_pred -CCCCcccccC-CCc------c------------------c--ccCceE--Eee----eCCcEEEEEechhHHHHHHHHH
Q 017513 213 -SFPVSAEVLD-SSF------C------------------L--PIGKAK--IER----EGKDVTITAFSKIVGLSLKAAE 258 (370)
Q Consensus 213 -~~~~~~~~~~-~~~------~------------------~--~~Gk~~--vl~----~g~dv~Iia~G~~~~~al~Aa~ 258 (370)
..|.....+. .+. . + .+|+.. ... +++|++||+||+....+++|++
T Consensus 200 ~~~p~s~~~~~~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~ 279 (390)
T PRK08366 200 FDNPISVGALATPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVD 279 (390)
T ss_pred CCCCcccccCCCCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHH
Confidence 0000000000 000 0 0 022111 111 4689999999999999999999
Q ss_pred HHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHH
Q 017513 259 ILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGA 307 (370)
Q Consensus 259 ~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~ 307 (370)
.|+++|++++++.+++++|||.+.|++.+++.++|+++|++...|.+|.
T Consensus 280 ~lr~~G~kvg~l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g~ 328 (390)
T PRK08366 280 LLRKEGYKVGYAKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEGI 328 (390)
T ss_pred HHHhcCCceeeEEEeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCcccH
Confidence 9999999999999999999999999999999999999999876576443
No 42
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=99.82 E-value=1.1e-17 Score=165.78 Aligned_cols=250 Identities=16% Similarity=0.135 Sum_probs=171.1
Q ss_pred eechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC-CCCCCCCCcchHH
Q 017513 87 LDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQHSHC 165 (370)
Q Consensus 87 ~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-G~~~~~G~tHs~~ 165 (370)
|-..-+|.+++++|.|+|.+|.|.+++|.++ .+..+.|++.. ++ ..++|+|++... +.+.+.+.+..|.
T Consensus 53 ~v~~EsE~aA~~~~~GAs~aGaRa~TaTS~~-Gl~lm~E~l~~-aa--------g~~lP~V~vv~~R~~~~p~~i~~d~~ 122 (394)
T PRK08367 53 FIKVESEHSAISACVGASAAGVRTFTATASQ-GLALMHEVLFI-AA--------GMRLPIVMAIGNRALSAPINIWNDWQ 122 (394)
T ss_pred EEEeCCHHHHHHHHHHHHhhCCCeEeeeccc-hHHHHhhHHHH-HH--------HccCCEEEEECCCCCCCCCCcCcchH
Confidence 3345699999999999999999999999775 45567788764 33 378999998731 2222334433555
Q ss_pred HHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC------CCCEEEEeccccc---------CC-C----------------
Q 017513 166 YAAWYASVPGLKVLSPYSSEDARGLLKAAIRD------PDPVVFLENELLY---------GE-S---------------- 213 (370)
Q Consensus 166 ~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~------~~Pv~i~~~~~l~---------~~-~---------------- 213 (370)
| .+....-+|.+++|+|.||++++...|++. ..||+++.+..+. ++ .
T Consensus 123 D-~~~~rd~g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~ 201 (394)
T PRK08367 123 D-TISQRDTGWMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYL 201 (394)
T ss_pred H-HHhccccCeEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCccccccccc
Confidence 5 234445679999999999999999999862 3799998654200 00 0
Q ss_pred CCCccc----ccCC-Cc-------------------------ccccCc-eEEee----eCCcEEEEEechhHHHHHHHHH
Q 017513 214 FPVSAE----VLDS-SF-------------------------CLPIGK-AKIER----EGKDVTITAFSKIVGLSLKAAE 258 (370)
Q Consensus 214 ~~~~~~----~~~~-~~-------------------------~~~~Gk-~~vl~----~g~dv~Iia~G~~~~~al~Aa~ 258 (370)
++..+. .... .+ .-.+|+ ...+. +++|++||++|+....+++|++
T Consensus 202 d~~~p~~~g~~~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~keav~ 281 (394)
T PRK08367 202 DPARPITQGALAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEFVD 281 (394)
T ss_pred CCCCCcccCCCCCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHHHH
Confidence 000000 0000 00 000231 11121 4789999999999999999999
Q ss_pred HHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCC---CCChHHHHHHHHHhhccCCCCCCEE-EEecCCCC
Q 017513 259 ILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFP---QHGVGAEICASVIEESFGYLDAPVE-RIAGADVP 334 (370)
Q Consensus 259 ~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~---~GGlg~~i~~~l~~~~~~~l~~~~~-~ig~~d~~ 334 (370)
.|+++|++++++.+++++|||.+.|++.+++.++|+|+|.+.. .|.|..+|...|...+ ...++. .++..
T Consensus 282 ~LR~~G~kVGllri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~dV~aal~~~~---~~~~v~~~~~gl--- 355 (394)
T PRK08367 282 KLREEGYKVGAAKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFADASAALVNES---EKPKILDFIIGL--- 355 (394)
T ss_pred HHHhcCCcceeEEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHHHHHHHhccC---CCCeEEEEEeCC---
Confidence 9999999999999999999999999999999999999999864 3567778887775322 112222 11110
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHh
Q 017513 335 MPYAANLERMAVPQVEDIVRAAKRACY 361 (370)
Q Consensus 335 ~~~~~~l~~~~gl~~~~I~~~i~~~l~ 361 (370)
+ ...+++++|.+.+.++++
T Consensus 356 g--------g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK08367 356 G--------GRDVTFKQLDEALEIAEK 374 (394)
T ss_pred C--------CCCCCHHHHHHHHHHHHH
Confidence 1 024788888888887665
No 43
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=99.81 E-value=3.8e-18 Score=176.73 Aligned_cols=219 Identities=20% Similarity=0.290 Sum_probs=161.2
Q ss_pred CcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCCc
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQ 161 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~t 161 (370)
+-.+-..-+|.+++++|.|+|.+|.|.+++|.++.|+ .+.|.+.. ++ +.++|+|++. +.|++.|..+.
T Consensus 237 ~~~~~q~E~E~aA~~~a~GAs~aG~Ra~taTSg~Gl~-lm~E~l~~-a~--------~~~~P~Vi~~~~R~gpstg~~t~ 306 (562)
T TIGR03710 237 GVVVVQAEDEIAAINMAIGASYAGARAMTATSGPGFA-LMTEALGL-AG--------MTETPLVIVDVQRGGPSTGLPTK 306 (562)
T ss_pred CcEEEeeccHHHHHHHHHhHHhcCCceeecCCCCChh-HhHHHHhH-HH--------hccCCEEEEEcccCCCCCCCCCC
Confidence 4567778899999999999999999999999876665 56687732 22 4789999987 56777766555
Q ss_pred chHHHH--HHHcc--CCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccccCC--C--------CC--------
Q 017513 162 HSHCYA--AWYAS--VPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLYGE--S--------FP-------- 215 (370)
Q Consensus 162 Hs~~~~--a~~~~--iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~--~--------~~-------- 215 (370)
+.|.|. +.+.. .-++.|++|+|+||++++..+|++ ...||+++.+..+... . .+
T Consensus 307 ~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~ 386 (562)
T TIGR03710 307 TEQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVL 386 (562)
T ss_pred ccHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccc
Confidence 567764 22221 335899999999999999999986 5799999965321000 0 00
Q ss_pred ---------------Ccc-cccCC-Cccc------------------------------------ccCceEEe-eeCCcE
Q 017513 216 ---------------VSA-EVLDS-SFCL------------------------------------PIGKAKIE-REGKDV 241 (370)
Q Consensus 216 ---------------~~~-~~~~~-~~~~------------------------------------~~Gk~~vl-~~g~dv 241 (370)
..+ .++.. +..+ ..+..+.. .+++|+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~ 466 (562)
T TIGR03710 387 EPEEEYKRYELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDADV 466 (562)
T ss_pred cCCCCCCCCCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCE
Confidence 000 00000 0000 00001111 135789
Q ss_pred EEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHH
Q 017513 242 TITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASV 313 (370)
Q Consensus 242 ~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l 313 (370)
+||+||++...+++|++.|+++|++++++++++++|||.+.|++.+++.++|+|+|++.. |.|..+|...+
T Consensus 467 ~iv~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~~~k~v~VvE~n~~-Gql~~~v~~~~ 537 (562)
T TIGR03710 467 LVIGWGSTYGAIREAVERLRAEGIKVALLHLRLLYPFPKDELAELLEGAKKVIVVEQNAT-GQLAKLLRAET 537 (562)
T ss_pred EEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCeecCCCHHHHHHHHhcCCEEEEEccChh-hhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999854 88888877666
No 44
>PRK05261 putative phosphoketolase; Provisional
Probab=99.81 E-value=1.9e-17 Score=173.91 Aligned_cols=303 Identities=12% Similarity=0.058 Sum_probs=201.3
Q ss_pred ccccHHHHHHHHHHHHHhcCCC-eEEecCCCCCCCCccccchhH-------------HHHhCCCcEeechhhHHHHHHHH
Q 017513 35 KQMMVREALNSALDEEMSADPK-VFLMGEEVGEYQGAYKISKGL-------------LEKYGPERVLDTPITEAGFTGIG 100 (370)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~~~~-ivvi~~Dl~~~~g~~~~~~~~-------------~~~~~p~r~~~~GIaE~~~v~~A 100 (370)
...++|. +++.|.++++.||+ ++++++|...|+......+.. .... -.|+++ |++|++|.|++
T Consensus 389 ~~~atr~-~g~~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~-~Grvie-~LsEh~~~g~~ 465 (785)
T PRK05261 389 MAEATRV-LGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAP-DGRVME-VLSEHLCEGWL 465 (785)
T ss_pred ccccHHH-HHHHHHHHHHhCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCC-CCCeee-eecHHHHHHHH
Confidence 4557888 99999999999999 899999987654432111100 1112 379999 99999999999
Q ss_pred HHHhccCCeeEEEcccchHH---HHHHHHH----HHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchH---HH-HHH
Q 017513 101 VGAAYYGLKPVVEFMTFNFS---MQAIDHI----INSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH---CY-AAW 169 (370)
Q Consensus 101 ~GlA~~G~rp~~~t~~~~f~---~ra~dqi----~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~---~~-~a~ 169 (370)
.|+++.|.+++++||. .|+ ..++.|+ |.. .-..|+.. ...++.++....=..+.+|.||+. .+ .+-
T Consensus 466 ~Gy~LtG~~~~~~sYe-aF~~ivd~m~~q~~kw~r~~-~~~~wr~~-~~sLn~l~Ts~~~~qghNG~THQ~Pg~ie~l~~ 542 (785)
T PRK05261 466 EGYLLTGRHGFFSSYE-AFIHIVDSMFNQHAKWLKVA-REIPWRKP-IPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVAN 542 (785)
T ss_pred HHHHhcCCCcceecHH-HHHHHHHHHHHHHHHHHHHH-hhcccCCC-CcceeEEeecceeecCCCCCCCCCchHHHHHHh
Confidence 9999999999999998 566 7888888 543 22333211 122233332222235679999944 22 355
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCCcccccCCC---cccccCceEEee--e-----C
Q 017513 170 YASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSS---FCLPIGKAKIER--E-----G 238 (370)
Q Consensus 170 ~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~---~~~~~Gk~~vl~--~-----g 238 (370)
+++ |++.|+.|+|++|+..+++.|++. +.|.+|..+|...+ .+...+ ..+..|.+ ++. + +
T Consensus 543 ~r~-~~~rV~rPaDaNe~laa~~~al~s~~~p~~IvlsRQ~lp-------~~~~~~~a~~~~~kGay-i~~~a~~~~~~~ 613 (785)
T PRK05261 543 KKP-DVIRVYLPPDANTLLAVADHCLRSRNYINVIVAGKQPRP-------QWLSMDEARKHCTKGLG-IWDWASNDDGEE 613 (785)
T ss_pred cCC-CcceEEeCCCHHHHHHHHHHHHHhCCCCEEEEEeCCCCc-------ccCChHHHHHhccCceE-EEEeccCCCCCC
Confidence 566 999999999999999999999986 68999987754211 111111 12345543 343 1 3
Q ss_pred CcEEEEEechhHHH-HHHHHHHHHhc--CCceeEEEecccc----------CCCHHHHHHHHhcCCeEEEEecCCCCCCh
Q 017513 239 KDVTITAFSKIVGL-SLKAAEILAKE--GISAEVINLRSIR----------PLDRSTINASVRKTNRLVTVEEGFPQHGV 305 (370)
Q Consensus 239 ~dv~Iia~G~~~~~-al~Aa~~L~~~--Gi~v~Vi~~~~l~----------P~d~~~i~~~~~~~~~vvvvEe~~~~GGl 305 (370)
.|++|+|+|+.+.. |++|++.|+++ |++++||++..+- -++.+.+.++.-..+.||+. -| |.
T Consensus 614 pDvvL~atGsev~leAlaAa~~L~~~~pgikvRVVSv~dLf~lQ~~~~~~~~lsd~~f~~lFt~d~pvif~-~h----gy 688 (785)
T PRK05261 614 PDVVLACAGDVPTLETLAAADLLREHFPDLKIRVVNVVDLMKLQPPSEHPHGLSDREFDALFTTDKPVIFA-FH----GY 688 (785)
T ss_pred CCEEEEEeCcHhhHHHHHHHHHHHhhCCCCCEEEEEechhhhhCCcccCCCCCCHHHHHHhCCCCCcEEEE-eC----CC
Confidence 59999999999999 99999999999 9999999994321 13345676666665665543 23 34
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEecCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHH
Q 017513 306 GAEICASVIEESFGYLDAPVERIAGADVPM-PYAANLERMAVPQVEDIVRAAKRAC 360 (370)
Q Consensus 306 g~~i~~~l~~~~~~~l~~~~~~ig~~d~~~-~~~~~l~~~~gl~~~~I~~~i~~~l 360 (370)
-+.|-..+..+. + ...+.-.|-.+.-. ..+-.+.-..++|--+++..+.+-+
T Consensus 689 p~~i~~l~~~r~--~-~~~~~v~gy~e~g~tttp~dm~~~N~~~r~~l~~~a~~~~ 741 (785)
T PRK05261 689 PWLIHRLTYRRT--N-HHNFHVRGYKEEGTTTTPFDMVVLNELDRFHLAIDAIDRV 741 (785)
T ss_pred HHHHHHHhccCC--C-CCccEEEEEecCCCCCCHHHHHHHhCCCHHHHHHHHHHhh
Confidence 566666665542 0 12344445444322 2344566667788888887766643
No 45
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=99.61 E-value=3.7e-13 Score=132.41 Aligned_cols=212 Identities=19% Similarity=0.240 Sum_probs=143.2
Q ss_pred CcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCCc
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQ 161 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~t 161 (370)
-.|+++ -+|.++++++.|++.+|.|.+++|.++.|+. +.+.+-. ++ +..+|+|+.. |+|++.++...
T Consensus 48 ~~~vq~-EsE~~a~s~v~GA~~aGar~~TaTSg~Gl~L-m~E~l~~-a~--------~~~~P~Vi~~~~R~~ps~g~p~~ 116 (365)
T COG0674 48 GVFVQM-ESEIGAISAVIGASYAGARAFTATSGQGLLL-MAEALGL-AA--------GTETPLVIVVAQRPLPSTGLPIK 116 (365)
T ss_pred cEEEEe-ccHHHHHHHHHHHHhhCcceEeecCCccHHH-HHHHHHH-HH--------hccCCeEEEEeccCcCCCccccc
Confidence 344444 5999999999999999999999998877764 4455432 22 5899999987 56776665444
Q ss_pred chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccc----------------------cCCC--
Q 017513 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELL----------------------YGES-- 213 (370)
Q Consensus 162 Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l----------------------~~~~-- 213 (370)
-.|.|.-..+. .++.+++-+|.||+.++...|++ ...|++++.+..+ |++.
T Consensus 117 ~dq~D~~~~r~-~g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~~~~~~~~~ 195 (365)
T COG0674 117 GDQSDLMAARD-TGFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEIPDYEPYTA 195 (365)
T ss_pred ccHHHHHHHHc-cCceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeecCccccccccccccCcccc
Confidence 45666433333 38888888899999999888876 4789998854211 1000
Q ss_pred C-CCcccccC----CC----------ccc----------------ccCc----eEEee-eCCcEEEEEechhHHHHHHHH
Q 017513 214 F-PVSAEVLD----SS----------FCL----------------PIGK----AKIER-EGKDVTITAFSKIVGLSLKAA 257 (370)
Q Consensus 214 ~-~~~~~~~~----~~----------~~~----------------~~Gk----~~vl~-~g~dv~Iia~G~~~~~al~Aa 257 (370)
. +-.+..++ .+ ..+ -.|. ..+.. ++++++||+||+....+.+++
T Consensus 196 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~DAe~viV~~Gss~~~~~~a~ 275 (365)
T COG0674 196 LDPSPPVLPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYEDAEIVIVAMGSSKGSTAEAV 275 (365)
T ss_pred cCCCCCCcCCCCCCCceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecCCCcCEEEEEeccchHhHHHHH
Confidence 0 00000000 00 000 0111 11111 578999999998888888777
Q ss_pred HHH-HhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHH
Q 017513 258 EIL-AKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGA 307 (370)
Q Consensus 258 ~~L-~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~ 307 (370)
..+ +++|++++++.+++++|||.+.|++.+++.+.+.|++-....|++++
T Consensus 276 ~~~~~~~g~kvg~l~vr~~rPFp~~~i~~~l~~~~~~~Vl~~e~~~g~~~~ 326 (365)
T COG0674 276 VDLLRDKGEKVGLLKVRTLRPFPAEEIREVLPKTNAVVVLDVEISLGGLAE 326 (365)
T ss_pred HHHHHhcCceEEEEEEEEeCCCCHHHHHHHhcccceeEEEEEccCCccchh
Confidence 665 58899999999999999999999999998875555555444566443
No 46
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.60 E-value=4.3e-13 Score=141.53 Aligned_cols=308 Identities=16% Similarity=0.209 Sum_probs=208.6
Q ss_pred cccccccHHHHHHHHHHHHHhc---CCCeEEecCCCCCCCCccccchhHHHH----------h--------------CCC
Q 017513 32 SAVKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYKISKGLLEK----------Y--------------GPE 84 (370)
Q Consensus 32 ~~~~~~~~r~a~~~~L~~l~~~---~~~ivvi~~Dl~~~~g~~~~~~~~~~~----------~--------------~p~ 84 (370)
++++.+|+..||.+.|..+++. .++||-+.+|.+.+.| + .+++++ | ...
T Consensus 484 ~~~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartfg---m-~g~f~~~gIy~~~gq~y~p~d~~~~~~y~e~~~G 559 (885)
T TIGR00759 484 SGEREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFG---M-EGLFRQIGIYSPHGQTYTPVDADSLLAYKESKDG 559 (885)
T ss_pred CCCCCccHHHHHHHHHHHHhcCcccccceeecCCCccccCC---h-HHhhcccCccCCCCccCCccchhhhhhcccCCCC
Confidence 3357899999999999998875 4569999999875433 2 333332 1 136
Q ss_pred cEeechhhHHHHHHH--HHHHhcc--C--CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 85 RVLDTPITEAGFTGI--GVGAAYY--G--LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 85 r~~~~GIaE~~~v~~--A~GlA~~--G--~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.++.||+|.++++. |+|.|.+ | +.||.-.|++|..+|..|.+ ..+|+ +...-.+++ ++|.++
T Consensus 560 q~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~YsmFgfqR~gD~~-waa~d--------~~argfl~g~taGrtTL 630 (885)
T TIGR00759 560 QILQEGINEAGAMASWIAAATSYATHGEPMIPFYIYYSMFGFQRIGDLC-WAAAD--------QRARGFLLGATAGRTTL 630 (885)
T ss_pred cchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEeeccccccchHHHH-HHHhh--------hcCCceEeccCCCcccC
Confidence 899999999999875 4555544 5 69999887765599999976 34554 344445554 567532
Q ss_pred -CCCCcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC----CCCEEEEecccccCCCCCCcccccCC-Cccccc
Q 017513 157 -GVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD----PDPVVFLENELLYGESFPVSAEVLDS-SFCLPI 229 (370)
Q Consensus 157 -~~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~----~~Pv~i~~~~~l~~~~~~~~~~~~~~-~~~~~~ 229 (370)
+-|-+|+. .-..+-..+||+.-|.|+-..|+..++++.++. +..+|.+++ .+.++...+ ..++. ...+-.
T Consensus 631 ~gEGlqHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~yylt--~~ne~~~qp-~~p~~~~egIlk 707 (885)
T TIGR00759 631 NGEGLQHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFYYVT--VMNENYVQP-PMPEGAEEGILK 707 (885)
T ss_pred CCccccCccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEEEEE--ecCCCCCCC-CCCcchHHhHHh
Confidence 34555621 112456779999999999999999999998863 567777765 233322111 11111 111222
Q ss_pred CceEEeee------CCcEEEEEechhHHHHHHHHHHHHhc-CCceeEEEeccccCCCHHHH-------------------
Q 017513 230 GKAKIERE------GKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTI------------------- 283 (370)
Q Consensus 230 Gk~~vl~~------g~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~l~P~d~~~i------------------- 283 (370)
|- +.+++ +.++.|+++|+.+.++++|++.|+++ |+.++|.++.|..-|..+..
T Consensus 708 G~-Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~~eL~Rd~~~~eR~n~lhP~~~~r~~~v 786 (885)
T TIGR00759 708 GL-YRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSFTELARDGHDVERWNLLHPTETPRVSYV 786 (885)
T ss_pred Cc-eecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCHHHHHHhHHHHHHHHhcCCCCCccccHH
Confidence 32 33332 24799999999999999999999986 99999999999877776633
Q ss_pred HHHHhc-CCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHH
Q 017513 284 NASVRK-TNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRAC 360 (370)
Q Consensus 284 ~~~~~~-~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l 360 (370)
.+.+.. ...+|++-+..+ ...+.+.. .++.++..+|. |.|+.+ .+.|.++|++|++.|+.++.+.|
T Consensus 787 ~~~L~~~~gP~va~tDy~~------~~~~qir~----~vp~~~~~LGt-DgFGrSdtr~~lr~~fevDa~~IV~AAL~aL 855 (885)
T TIGR00759 787 AQVLNEADAPVIASTDYVR------AFAEQIRP----YVPRKYVTLGT-DGFGRSDTRENLRHFFEVDAKSVVLAALYAL 855 (885)
T ss_pred HHHhccCCCCEEEEccchh------hhHHHHhh----hcCCCceEecC-CCCCCCCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 122222 236677666532 22333322 23557778875 677654 58899999999999999999999
Q ss_pred hcccccc
Q 017513 361 YRSVPMA 367 (370)
Q Consensus 361 ~~~~~~~ 367 (370)
.+..++.
T Consensus 856 ~~~g~~~ 862 (885)
T TIGR00759 856 ADDGEID 862 (885)
T ss_pred hhcCCCC
Confidence 7766654
No 47
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=99.58 E-value=6.1e-13 Score=147.43 Aligned_cols=219 Identities=16% Similarity=0.181 Sum_probs=151.0
Q ss_pred cEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCCcc
Q 017513 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQH 162 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~tH 162 (370)
.|+++ -+|.++++++.|++.+|.|.++.|.++.|+ .+.+.+. .++ ..++|+|+.. ++|.+.+...+-
T Consensus 53 ~~vq~-EsE~~A~~av~GA~~aGara~T~TSs~GL~-LM~e~l~-~~a--------g~~~P~Vi~va~R~~~~~~~~i~~ 121 (1165)
T TIGR02176 53 KVVEM-QSEAGAAGAVHGALQTGALTTTFTASQGLL-LMIPNMY-KIA--------GELLPCVFHVSARAIAAHALSIFG 121 (1165)
T ss_pred eEEEc-cchHHHHHHHHhHhhcCCCEEEecChhHHH-HHHHHHH-HHH--------hccCCEEEEEecCCCCCCCCccCC
Confidence 34544 499999999999999999999999876665 4466653 233 2579999887 455543322221
Q ss_pred hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccccCC---CCC--------------------
Q 017513 163 SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLYGE---SFP-------------------- 215 (370)
Q Consensus 163 s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~~~---~~~-------------------- 215 (370)
.+.|.... .--|+.+++|+|.||+.++...|++ ...|++++.+-..... ++.
T Consensus 122 dh~Dv~~~-R~~G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~~~ 200 (1165)
T TIGR02176 122 DHQDVMAA-RQTGFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAAFR 200 (1165)
T ss_pred CchHHHHh-hcCCeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhccccc
Confidence 23332222 3457899999999999999988875 5789999865311000 000
Q ss_pred ---Ccccc-------cCCC-c-------------------------ccccCc----eEEe-eeCCcEEEEEechhHHHHH
Q 017513 216 ---VSAEV-------LDSS-F-------------------------CLPIGK----AKIE-REGKDVTITAFSKIVGLSL 254 (370)
Q Consensus 216 ---~~~~~-------~~~~-~-------------------------~~~~Gk----~~vl-~~g~dv~Iia~G~~~~~al 254 (370)
+.++- .+++ + .--.|+ .+.. .++++.+||++|+....+.
T Consensus 201 ~~~l~~~~p~~~G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~~~ 280 (1165)
T TIGR02176 201 KRSMNPEHPHVRGTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAETIE 280 (1165)
T ss_pred ccccCCCCCceeCCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHHHH
Confidence 00000 0000 0 000121 1111 2468999999999999999
Q ss_pred HHHHHHHhcCCceeEEEeccccCCCHHHHHHHH-hcCCeEEEEecCCCCC----ChHHHHHHHHHh
Q 017513 255 KAAEILAKEGISAEVINLRSIRPLDRSTINASV-RKTNRLVTVEEGFPQH----GVGAEICASVIE 315 (370)
Q Consensus 255 ~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~-~~~~~vvvvEe~~~~G----Glg~~i~~~l~~ 315 (370)
+|++.|+++|++|++|.++.++|||.+.|++.+ ++.++|+|+|.+...| .|..+|...+..
T Consensus 281 eav~~Lr~~G~kVGli~vr~~rPFp~e~l~~aLp~svK~I~Vler~~~~g~~g~pL~~DV~~al~~ 346 (1165)
T TIGR02176 281 ETVDYLNAKGEKVGLLKVRLYRPFSAETFFAALPKSVKRIAVLDRTKEPGAAGEPLYLDVVSAFYE 346 (1165)
T ss_pred HHHHHHHhcCCceeEEEEeEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCcccChHHHHHHHHHhh
Confidence 999999999999999999999999999999988 5778999999985433 477777777754
No 48
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.54 E-value=1.6e-12 Score=131.83 Aligned_cols=253 Identities=19% Similarity=0.233 Sum_probs=173.5
Q ss_pred CcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcch
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHS 163 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs 163 (370)
+-||+++..|.-+..+|+|++..|.|.++..- ...+.++.|.+++ ++|.. .+-.++++..+.+ +...++.
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~mK-hVGlNvAsDpl~s-~ay~G------v~GGlviv~aDDp--g~~SSqn 127 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTMK-HVGLNVASDPLMS-LAYAG------VTGGLVIVVADDP--GMHSSQN 127 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEec-ccccccchhhhhh-hhhcC------ccccEEEEEccCC--Ccccccc
Confidence 78999999999999999999999999999876 5789999999875 55532 3334555542221 1112222
Q ss_pred HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccccc-CCC-CCCc----ccc-cCC-CcccccCc
Q 017513 164 HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY-GES-FPVS----AEV-LDS-SFCLPIGK 231 (370)
Q Consensus 164 ~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~-~~~-~~~~----~~~-~~~-~~~~~~Gk 231 (370)
+.|..++...-.+-|+.|+|+||++++++++++ ...||++|.....- .+. +... +.+ +.. .+.-..|+
T Consensus 128 eqdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r 207 (640)
T COG4231 128 EQDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGR 207 (640)
T ss_pred hhHhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccc
Confidence 333346666666779999999999999999997 36899998643210 000 0000 000 000 00000010
Q ss_pred -------------------------------eEEe--eeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCC
Q 017513 232 -------------------------------AKIE--REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPL 278 (370)
Q Consensus 232 -------------------------------~~vl--~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~ 278 (370)
...+ .+..++-||+.|..+..+.||.+.| |++..++.+-+.+||
T Consensus 208 ~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~n~v~~~~~~~lGII~~G~ay~yVkeAl~~l---gl~~~~lklg~~~Pl 284 (640)
T COG4231 208 YVRVPANALRHRHRKLLEKWEAAEEFINANPLNRVEGSDDAKLGIIASGIAYNYVKEALEDL---GLDDELLKLGTPYPL 284 (640)
T ss_pred eeecCcccchhhHHHHHHHHHHHHHHHhhCcccccccCCCCceEEEecCccHHHHHHHHHHc---CCCceeEEecCCcCC
Confidence 0011 1237899999999999999988877 899999999999999
Q ss_pred CHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 017513 279 DRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 358 (370)
Q Consensus 279 d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~ 358 (370)
|.+.+++.+++.++|+||||.... +-.++.+.+.+.+ .++.-.|..+.+.|- .+-+|++.|..+|.+
T Consensus 285 p~~~i~~F~~g~~~vlVVEE~~P~--iE~qv~~~l~~~g-----~~v~v~GKd~gllP~------~GElt~~~i~~ai~~ 351 (640)
T COG4231 285 PEQLIENFLKGLERVLVVEEGEPF--IEEQVKALLYDAG-----LPVEVHGKDEGLLPM------EGELTPEKIANAIAK 351 (640)
T ss_pred CHHHHHHHHhcCcEEEEEecCCch--HHHHHHHHHHhcC-----CceEeecccccccCc------ccccCHHHHHHHHHH
Confidence 999999999999999999998762 5667777776643 344444433333432 245799999999999
Q ss_pred HHhc
Q 017513 359 ACYR 362 (370)
Q Consensus 359 ~l~~ 362 (370)
++..
T Consensus 352 ~l~~ 355 (640)
T COG4231 352 FLGK 355 (640)
T ss_pred HhCc
Confidence 8854
No 49
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.29 E-value=3.7e-10 Score=124.02 Aligned_cols=306 Identities=13% Similarity=0.029 Sum_probs=183.8
Q ss_pred cccHHHHHHHHHHHHHhcCCC--e---EEecCCCCCCCCcc--ccchhHHHHhCC-----CcEeechhhHHHHHHHHHHH
Q 017513 36 QMMVREALNSALDEEMSADPK--V---FLMGEEVGEYQGAY--KISKGLLEKYGP-----ERVLDTPITEAGFTGIGVGA 103 (370)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~~~~--i---vvi~~Dl~~~~g~~--~~~~~~~~~~~p-----~r~~~~GIaE~~~v~~A~Gl 103 (370)
-++-.+|+...+.+-.+.|.. + -+++ .|.|+- .+...|. ++.. +-+|+.|+.|.-+.+++.|.
T Consensus 19 ~l~GneAivr~~l~q~~~d~~aG~~ta~~vs----gYpGsP~~~i~~~l~-~~~~~l~~~~i~~e~~~NEkvA~e~a~Ga 93 (1159)
T PRK13030 19 FLTGTQALVRLLLMQRRRDRARGLNTAGFVS----GYRGSPLGGVDQALW-KAKKLLDASDIRFLPGINEELAATAVLGT 93 (1159)
T ss_pred eeeHHHHHHHHHHHhhhHHHhcCCCccceEE----EeCCCCHHHHHHHHH-HhhhhhcccceEEeecCCHHHHHHHHHHh
Confidence 455667887777765555443 2 2222 244441 1122232 2211 37999999999999999999
Q ss_pred h---------ccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHH-HHHHccC
Q 017513 104 A---------YYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCY-AAWYASV 173 (370)
Q Consensus 104 A---------~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~-~a~~~~i 173 (370)
+ ..|.+.+++.-. ..+.|+.|.+++. ++.. ..-+-.|+++..+.+.......-+++. .+....+
T Consensus 94 q~~~~~~~~~~~Gv~~l~~~K~-~GvnvaaD~l~~~-n~~G----~~~~GG~v~v~gDDpg~~SSq~eqdSr~~~~~a~i 167 (1159)
T PRK13030 94 QQVEADPERTVDGVFAMWYGKG-PGVDRAGDALKHG-NAYG----SSPHGGVLVVAGDDHGCVSSSMPHQSDFALIAWHM 167 (1159)
T ss_pred ccccccCCccccceEEEEecCc-CCcccchhHHHHH-Hhhc----CCCCCcEEEEEecCCCCccCcCHHHHHHHHHHcCC
Confidence 9 667777988865 6789999999864 3321 111334444432211100011111332 2344445
Q ss_pred CCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccc---------ccCCCC--CCcccccC-C-----Ccc------
Q 017513 174 PGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENEL---------LYGESF--PVSAEVLD-S-----SFC------ 226 (370)
Q Consensus 174 P~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~---------l~~~~~--~~~~~~~~-~-----~~~------ 226 (370)
.|+.|+|++|++++..++++ ...||.++.... +.+... ...+.+.. . .+.
T Consensus 168 ---Pvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~~ 244 (1159)
T PRK13030 168 ---PVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSLA 244 (1159)
T ss_pred ---ceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcHHH
Confidence 59999999999999999986 478999985321 000000 00000000 0 000
Q ss_pred ------------------cccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCC-----ceeEEEeccccCCCHHHH
Q 017513 227 ------------------LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGI-----SAEVINLRSIRPLDRSTI 283 (370)
Q Consensus 227 ------------------~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi-----~v~Vi~~~~l~P~d~~~i 283 (370)
.++.+..+-.++.++.||++|.....++||.+.|...+. .++++.+-..+||+.+.+
T Consensus 245 ~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgirilKvgm~~PL~~~~i 324 (1159)
T PRK13030 245 IEARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRIYKVGLSWPLEPTRL 324 (1159)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccEEEeCCccCCCHHHH
Confidence 011111111224779999999999999999999854332 467888889999999999
Q ss_pred HHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhc
Q 017513 284 NASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYR 362 (370)
Q Consensus 284 ~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~l~~ 362 (370)
.+.+++.++|+||||... =+-.++.+.+.+... ..++.-+|..|.-+. ..+-....++++.|.+.+.+.+..
T Consensus 325 ~~F~~g~d~VlVVEE~~p--~iE~Qlk~~l~~~~~---~~~~~v~GK~~~~G~--pllp~~gEl~~~~v~~~l~~~l~~ 396 (1159)
T PRK13030 325 REFADGLEEILVIEEKRP--VIEQQIKDYLYNRPG---GARPRVVGKHDEDGA--PLLSELGELRPSLIAPVLAARLAR 396 (1159)
T ss_pred HHHHhcCCEEEEEeCCch--HHHHHHHHHHHhccc---cCCceeEEEECCCCC--cCCCCcCCcCHHHHHHHHHHHHhc
Confidence 999999999999999764 255677777765431 113344565542110 011122458999999999877653
No 50
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.28 E-value=5.9e-11 Score=102.36 Aligned_cols=117 Identities=29% Similarity=0.320 Sum_probs=87.2
Q ss_pred HhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCC-
Q 017513 80 KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAG- 157 (370)
Q Consensus 80 ~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~- 157 (370)
+. +++.+..++.|++++++|.|+|+.|.+|++.+.+..++.++++++. +++ ..++||+++.. .+....
T Consensus 32 ~~-~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~a~--------~~~~Pvl~i~~~~~~~~~~ 101 (154)
T cd06586 32 EG-DKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-DAA--------AEHLPVVFLIGARGISAQA 101 (154)
T ss_pred cc-CCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-HHH--------hcCCCEEEEeCCCChhhhc
Confidence 44 7999999999999999999999998899888875567789999998 444 36799999974 343332
Q ss_pred CCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHH---HHHhCCCCEEEEec
Q 017513 158 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLK---AAIRDPDPVVFLEN 206 (370)
Q Consensus 158 ~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~---~a~~~~~Pv~i~~~ 206 (370)
.+.+|..++.++++.+|++.+..|++.++...+.+ .+...++|++++.|
T Consensus 102 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip 153 (154)
T cd06586 102 KQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLP 153 (154)
T ss_pred cCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 33344445578999999998888777655544332 23334689999765
No 51
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=99.26 E-value=5.9e-10 Score=122.17 Aligned_cols=303 Identities=14% Similarity=0.026 Sum_probs=185.9
Q ss_pred cccHHHHHHHHHHHHHhcC--CCe---EEecCCCCCCCCcc--ccchhHHHHhC----CCcEeechhhHHHHHHHH----
Q 017513 36 QMMVREALNSALDEEMSAD--PKV---FLMGEEVGEYQGAY--KISKGLLEKYG----PERVLDTPITEAGFTGIG---- 100 (370)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~~--~~i---vvi~~Dl~~~~g~~--~~~~~~~~~~~----p~r~~~~GIaE~~~v~~A---- 100 (370)
-++-.+|+...+.+-.+.| -.+ -+++ .|.|+- .+...|.+.-. -+-+|+.|+.|.-+.+++
T Consensus 27 ~l~G~qAivR~~l~q~~~D~~aG~~ta~~vs----GYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ 102 (1165)
T PRK09193 27 FLTGTQALVRLPLLQRERDRAAGLNTAGFVS----GYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQ 102 (1165)
T ss_pred eeeHHHHHHHHHHHHhhHHHhcCCCccceEE----eeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhc
Confidence 4556788888777655555 333 3443 244441 11222322110 137899999999999999
Q ss_pred -----HHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCC-CcchHHH-HHHHccC
Q 017513 101 -----VGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG-AQHSHCY-AAWYASV 173 (370)
Q Consensus 101 -----~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G-~tHs~~~-~a~~~~i 173 (370)
.|.+..|.+.+|+.-. ..+.|+.|.+++.. +.. ..-+-.|+++..+....... ..| ++. ......+
T Consensus 103 ~~~~~~~a~~~Gv~~l~y~K~-pGvn~aaD~l~~~n-~~G----~~~~GGvv~v~gDDpg~~SSq~eq-dSr~~~~~a~i 175 (1165)
T PRK09193 103 QVNLFPGAKYDGVFGMWYGKG-PGVDRSGDVFRHAN-AAG----TSPHGGVLALAGDDHAAKSSTLPH-QSEHAFKAAGM 175 (1165)
T ss_pred ccccccceeeccceEEEecCc-CCccccHhHHHHHH-hhc----CCCCCcEEEEEecCCCCccccchh-hhHHHHHHcCC
Confidence 7779999999999875 67899999998643 221 11133445443221111111 112 333 2344445
Q ss_pred CCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccc---------cC--CCCCCcccc--cCC----Ccc------
Q 017513 174 PGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELL---------YG--ESFPVSAEV--LDS----SFC------ 226 (370)
Q Consensus 174 P~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l---------~~--~~~~~~~~~--~~~----~~~------ 226 (370)
.|+.|+|++|++++..++++ ...||.++..... .. .......++ +.. .+.
T Consensus 176 ---Pvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~g~~~r~~~~p~~~ 252 (1165)
T PRK09193 176 ---PVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPEDFEMPPGGLNIRWPDPPLEQ 252 (1165)
T ss_pred ---ceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcccccCCcccccccCCCCcHHH
Confidence 59999999999999999986 4689999853210 00 000000000 000 000
Q ss_pred ------------------cccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCc--------eeEEEeccccCCCH
Q 017513 227 ------------------LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGIS--------AEVINLRSIRPLDR 280 (370)
Q Consensus 227 ------------------~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~--------v~Vi~~~~l~P~d~ 280 (370)
.++.+..+-.++.++.||++|.....+++|.+.| |++ ++++.+-..+|||.
T Consensus 253 ~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~l---g~~~~~~~~~gi~ilKvgm~~PL~~ 329 (1165)
T PRK09193 253 EARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDL---GLDEETAARLGIRLYKVGMVWPLEP 329 (1165)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHc---CCChhhhcccCCCEEEeCCCCCCCH
Confidence 0111111001246899999999999999998877 555 89999999999999
Q ss_pred HHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 017513 281 STINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC 360 (370)
Q Consensus 281 ~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~l 360 (370)
+.+++.+++.+.|+||||-.. =+-.+|.+.+.+.. ...+...+|..|.-+. ..+-....++++.|.+.+.+.+
T Consensus 330 ~~i~~Fa~g~~~vlVVEE~~p--~iE~qlk~~l~~~~---~~~rp~v~GK~~~~g~--~llp~~gEl~~~~va~~l~~~l 402 (1165)
T PRK09193 330 QGVRAFAEGLDEILVVEEKRQ--IIEYQLKEELYNWP---DDVRPRVIGKFDPQGN--WLLPAHGELSPAIIAKAIARRL 402 (1165)
T ss_pred HHHHHHHhcCCEEEEEecCch--HHHHHHHHHHhhcc---CCcCceeEeeeCCCCC--ccCCCcCCcCHHHHHHHHHHHh
Confidence 999999999999999999764 35666776666543 2222345666542210 0111224589999999988776
Q ss_pred hc
Q 017513 361 YR 362 (370)
Q Consensus 361 ~~ 362 (370)
.+
T Consensus 403 ~~ 404 (1165)
T PRK09193 403 LK 404 (1165)
T ss_pred hh
Confidence 53
No 52
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.22 E-value=4.1e-09 Score=107.67 Aligned_cols=302 Identities=17% Similarity=0.189 Sum_probs=196.2
Q ss_pred cccccHHHHHHHHHHHHHhc---CCCeEEecCCCCCCCCccccchhHHHH----------hC--------------CCcE
Q 017513 34 VKQMMVREALNSALDEEMSA---DPKVFLMGEEVGEYQGAYKISKGLLEK----------YG--------------PERV 86 (370)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~---~~~ivvi~~Dl~~~~g~~~~~~~~~~~----------~~--------------p~r~ 86 (370)
++.+|+..||...|.++++. .++||=+.+|.+.+.| + .+++.+ |- ..+.
T Consensus 489 g~~iSTtmAfvr~l~~llkdk~ig~riVpiipDearTfg---m-eg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~~GQi 564 (887)
T COG2609 489 GEEISTTMAFVRILNELLKDKEIGKRIVPIIPDEARTFG---M-EGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAESGQI 564 (887)
T ss_pred CccchhHHHHHHHHHHHHhccccCCccccccCchhhhcc---c-hhhhhhcccccCCCccCCccchhhhhhhhhCCCcch
Confidence 45789999999999999984 2468999999874322 1 233221 11 2678
Q ss_pred eechhhHHHHHHH--HHHHhcc--C--CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccC-EEEEeCCCCC--CC
Q 017513 87 LDTPITEAGFTGI--GVGAAYY--G--LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVP-IVFRGPNGAA--AG 157 (370)
Q Consensus 87 ~~~GIaE~~~v~~--A~GlA~~--G--~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~p-vv~~~~~G~~--~~ 157 (370)
++.||+|.++++. |+|.|.+ | +.||.-.|++|..+|..|.+ +.+|+ +..- -++.+..|.+ .|
T Consensus 565 LqeGInE~ga~~sw~AagtSys~~~~pmiPfyi~YsmFgfqRigD~~-waA~d--------q~ARgFLlgaTagrtTLng 635 (887)
T COG2609 565 LQEGINEAGAFASWIAAGTSYSTHGEPMIPFYIYYSMFGFQRIGDLL-WAAGD--------QDARGFLLGATAGRTTLNG 635 (887)
T ss_pred HHhhhccccHHHHHHHHhcccccCCccceeeeeeechhhhhhHHHHH-HHHHh--------hhhcceeEeecCCCceeCc
Confidence 8999999999875 5555554 4 68998777766599999965 45564 3333 3333343432 23
Q ss_pred CCCcchHHHH--HHHccCCCcEEEeeCCHHHHHHHHHHHHhC-------CCCEEEEecccccCCCCCCcccccC-CCccc
Q 017513 158 VGAQHSHCYA--AWYASVPGLKVLSPYSSEDARGLLKAAIRD-------PDPVVFLENELLYGESFPVSAEVLD-SSFCL 227 (370)
Q Consensus 158 ~G~tHs~~~~--a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-------~~Pv~i~~~~~l~~~~~~~~~~~~~-~~~~~ 227 (370)
-|-+| ++-. -+-..+||+.-+.|+-+.|+.-++++.++. +.-.||+....-|.. + ..|. .+..+
T Consensus 636 EGlqH-edghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~v~yYlt~~ne~~~q----P-amp~gae~gI 709 (887)
T COG2609 636 EGLQH-EDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYITLSNENYPQ----P-AMPEGAEEGI 709 (887)
T ss_pred ccccc-ccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccCcCCcEEEEEeccCcCCC----C-CCCCcchhhh
Confidence 34555 2221 233569999999999999999999998872 223556543322221 1 1111 11122
Q ss_pred ccCceEEee---e--CCcEEEEEechhHHHHHHHHHHHHh-cCCceeEEEeccccCCCHH-------------------H
Q 017513 228 PIGKAKIER---E--GKDVTITAFSKIVGLSLKAAEILAK-EGISAEVINLRSIRPLDRS-------------------T 282 (370)
Q Consensus 228 ~~Gk~~vl~---~--g~dv~Iia~G~~~~~al~Aa~~L~~-~Gi~v~Vi~~~~l~P~d~~-------------------~ 282 (370)
..|- +.++ . +.++.|+++|....+|++|++.|++ .|+.++|..+.|..-+..+ .
T Consensus 710 ~kG~-Y~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~~eL~rdg~a~~R~n~lhP~~~~~v~y 788 (887)
T COG2609 710 IKGI-YKLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSFDELARDGQAAERWNLLHPTETPRVPY 788 (887)
T ss_pred hhce-eEeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccHHHHhcchHHHHHHHhcCCCCCCCchH
Confidence 2232 2232 1 4789999999999999999999987 5999999999987766554 3
Q ss_pred HHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCC--CHHHHHHHhCCCHHHHHHHHHHHH
Q 017513 283 INASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMP--YAANLERMAVPQVEDIVRAAKRAC 360 (370)
Q Consensus 283 i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~--~~~~l~~~~gl~~~~I~~~i~~~l 360 (370)
+.+.+.....+|.+-+-.+ ..++++.. ..+.....+| .|.|+. +.+.|.++|.+|+..|+-++.+.|
T Consensus 789 v~~~L~~~~p~Va~tDy~~------~~a~qir~----~vp~~y~vLG-tdgFGrSdsr~~Lr~~fevDa~~vv~Aal~~L 857 (887)
T COG2609 789 VAQVLNADGPVVAVTDYMK------LFAEQIRA----VVPQRYRVLG-TDGFGRSDSRENLRRFFEVDAYYVVVAALSAL 857 (887)
T ss_pred HHHHhccCCCeEEechhhH------hHHHHHhc----ccCCeeEEec-cCCCCccCcHHHHHHHhccchHHHHHHHHHHH
Confidence 4444553456666666443 22334422 1233455565 467765 457899999999999999999998
Q ss_pred hccccc
Q 017513 361 YRSVPM 366 (370)
Q Consensus 361 ~~~~~~ 366 (370)
.+.-++
T Consensus 858 a~~g~i 863 (887)
T COG2609 858 AKRGEI 863 (887)
T ss_pred hcCCCc
Confidence 654443
No 53
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.21 E-value=1.8e-09 Score=118.27 Aligned_cols=261 Identities=13% Similarity=0.009 Sum_probs=164.3
Q ss_pred CcEeechhhHHHH---------HHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCC
Q 017513 84 ERVLDTPITEAGF---------TGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA 154 (370)
Q Consensus 84 ~r~~~~GIaE~~~---------v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~ 154 (370)
+=+|+.|+.|.-+ +.++.|.+..|.+.+++.-. ..+.|+.|.+++..+... ..+-.|+++..+..
T Consensus 85 ~i~fe~~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwygK~-pGvn~aaD~l~h~n~~gt-----~~~GGvv~v~gDDp 158 (1186)
T PRK13029 85 DVVFQPGVNEELAATAVWGSQQLELDPGAKRDGVFGMWYGKG-PGVDRSGDALRHANLAGT-----SPLGGVLVLAGDDH 158 (1186)
T ss_pred ceEEeecCCHHHHHHHhhhhhhcccccceeeccceEEEecCc-CCcccchhHHHHhhcccc-----CCCCcEEEEEecCC
Confidence 3689999999999 66777777889999999875 678999999986442111 12334454432221
Q ss_pred CCCCCCcchHHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccccc-----------CCCCCCcc
Q 017513 155 AAGVGAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY-----------GESFPVSA 218 (370)
Q Consensus 155 ~~~~G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~-----------~~~~~~~~ 218 (370)
.......-+|+. ......+ .|+.|+|++|++++..++++ ...||.++.....- +.......
T Consensus 159 g~~SSq~eqdSr~~~~~a~i---Pvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~ 235 (1186)
T PRK13029 159 GAKSSSVAHQSDHTFIAWGI---PVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPD 235 (1186)
T ss_pred CCccccCHHHHHHHHHHcCC---ceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcc
Confidence 111111112333 2344445 49999999999999999986 46899998532110 00000000
Q ss_pred cccC-C-----Ccc------------------------cccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCc--
Q 017513 219 EVLD-S-----SFC------------------------LPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGIS-- 266 (370)
Q Consensus 219 ~~~~-~-----~~~------------------------~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~-- 266 (370)
++.. + .+. .++.+..+-.++.++.||++|..+..++||.+.| |++
T Consensus 236 ~f~~~~~g~~~r~~~~p~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~l---gl~~~ 312 (1186)
T PRK13029 236 DFVLPPGGLHIRWPDDPLAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDL---GLDDA 312 (1186)
T ss_pred cccCCccccccccCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHc---CCChh
Confidence 0000 0 000 0111111002247899999999999999998877 554
Q ss_pred ------eeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCC----CC-
Q 017513 267 ------AEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADV----PM- 335 (370)
Q Consensus 267 ------v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~----~~- 335 (370)
++++.+-..+|||.+.+++.+++.+.|+||||-.. =+-.+|.+.+.+.. ...+...+|..|. ..
T Consensus 313 ~~~~~gi~ilKvgm~~PL~~~~i~~Fa~g~d~vlVVEE~~p--~iE~qlk~~l~~~~---~~~rp~v~GK~~~~~~~~~~ 387 (1186)
T PRK13029 313 TCAALGIRLLKVGCVWPLDPQSVREFAQGLEEVLVVEEKRA--VIEYQLKEELYNWR---EDVRPAIFGKFDHRDGAGGE 387 (1186)
T ss_pred hccccCCCEEEeCCCCCCCHHHHHHHHhcCCEEEEEecCch--HHHHHHHHHHhhcc---CCcCCeeEeccccccccccc
Confidence 89999999999999999999999999999999764 35667777766543 1222344666540 00
Q ss_pred ---CCH-HHHHHHhCCCHHHHHHHHHHHHh
Q 017513 336 ---PYA-ANLERMAVPQVEDIVRAAKRACY 361 (370)
Q Consensus 336 ---~~~-~~l~~~~gl~~~~I~~~i~~~l~ 361 (370)
+.+ ..+-....+|++.|.+.+.+.+.
T Consensus 388 ~~~~~g~~llp~~gEL~p~~va~~l~~~l~ 417 (1186)
T PRK13029 388 WSVPAGRWLLPAHAELSPALIAKAIARRLA 417 (1186)
T ss_pred ccccccCCCCCcccCcCHHHHHHHHHHHHH
Confidence 000 11222345899999999987763
No 54
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.12 E-value=1.2e-08 Score=108.19 Aligned_cols=285 Identities=17% Similarity=0.181 Sum_probs=192.9
Q ss_pred cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccc----------------cchhHHHHhCCCcEeechhhHHHHH
Q 017513 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYK----------------ISKGLLEKYGPERVLDTPITEAGFT 97 (370)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~----------------~~~~~~~~~~p~r~~~~GIaE~~~v 97 (370)
...++|.-+=--++-.|+.+...|-+.++|.. -|+|. -+..|....++=-.+|..++|-+++
T Consensus 884 ~g~iDWa~gEllAfGsLl~eG~~VRL~GQDsr--RGTF~QRHavl~D~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~ 961 (1228)
T PRK12270 884 EGGIDWAFGELLAFGSLLLEGTPVRLSGQDSR--RGTFSQRHAVLIDRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAM 961 (1228)
T ss_pred cCCccHHHHHHHHHHHHHhcCceeeeeccccC--CcceeeeeEEEecCCCCcccCcHhhcCCCcceEEEecchhhHHHhh
Confidence 45666765555566688888888999999975 24432 1233333322334689999999999
Q ss_pred HHHHHHhcc--CCeeEEEcccchHH---HHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchH-HHHHHH-
Q 017513 98 GIGVGAAYY--GLKPVVEFMTFNFS---MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWY- 170 (370)
Q Consensus 98 ~~A~GlA~~--G~rp~~~t~~~~f~---~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~-~~~a~~- 170 (370)
|+-.|.|.+ ....+++.+|.+|. |-.+|++..+ +-.+| .++..||+..+.|.- |.|+-||. -.+.+|
T Consensus 962 GFEYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefIss-~e~KW----gQ~S~vvlLLPHGyE-GQGPdHSSaRiERfLq 1035 (1228)
T PRK12270 962 GFEYGYSVERPDALVLWEAQFGDFANGAQTIIDEFISS-GEAKW----GQRSGVVLLLPHGYE-GQGPDHSSARIERFLQ 1035 (1228)
T ss_pred ccceeeecCCCcceeeehhhhcccccchHHHHHHHHhh-hHhhh----ccccceEEEccCCcC-CCCCCcchHHHHHHHH
Confidence 999999999 46889999999996 6778887643 33333 378889999887764 35788854 345655
Q ss_pred -ccCCCcEEEeeCCHHHHHHHHHHH-HhC-CCCEEEEecccccCCCCCCcccccCCCcccccCceE-Eee-----e--CC
Q 017513 171 -ASVPGLKVLSPYSSEDARGLLKAA-IRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAK-IER-----E--GK 239 (370)
Q Consensus 171 -~~iP~~~V~~P~d~~e~~~~l~~a-~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~-vl~-----~--g~ 239 (370)
+.-.||+|..|++|...+.+|++- +.. ..|.+++.||.+.|.+...+. + ++ |.-|+.+ |+. + .-
T Consensus 1036 lcAe~nm~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S~-v--ed--FT~g~F~pVi~D~~~~~~~~V 1110 (1228)
T PRK12270 1036 LCAEGNMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSD-V--ED--FTEGKFRPVIDDPTVDDGAKV 1110 (1228)
T ss_pred hhccCCeEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcCC-H--HH--hccCCceecCCCCCCCCccce
Confidence 567799999999999999999764 443 689999999988775422111 0 11 1122222 111 1 13
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC---eEEEEe-cCCCCCChHHHHHHHHHh
Q 017513 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN---RLVTVE-EGFPQHGVGAEICASVIE 315 (370)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~---~vvvvE-e~~~~GGlg~~i~~~l~~ 315 (370)
+-+|+|+|-.+....+..+. ...-++.+|.+..|+|||.+.|.+.+.++. .++.|. |.-..|-| ..++-.|.+
T Consensus 1111 ~RVlLcSGKvYYdL~a~R~k--~~~~d~AIvRvEQLyP~p~~~l~~~l~~ypna~e~~wvQeEP~NqGaw-~f~~~~l~~ 1187 (1228)
T PRK12270 1111 RRVLLCSGKLYYDLAARREK--DGRDDTAIVRVEQLYPLPRAELREALARYPNATEVVWVQEEPANQGAW-PFMALNLPE 1187 (1228)
T ss_pred eEEEEEcchhHHHHHHHHHh--cCCCceEEEEhhhhCCCCHHHHHHHHHhCCCcceeEEeccCcccCCCc-hhhhhhhHh
Confidence 56789999999887655332 223479999999999999999999999874 345554 44444544 455555544
Q ss_pred hccCCCCCCEEEEecCCCCCC
Q 017513 316 ESFGYLDAPVERIAGADVPMP 336 (370)
Q Consensus 316 ~~~~~l~~~~~~ig~~d~~~~ 336 (370)
..- -..++++++-+....|
T Consensus 1188 ~l~--~~~~lr~VsRpasasP 1206 (1228)
T PRK12270 1188 LLP--DGRRLRRVSRPASASP 1206 (1228)
T ss_pred hcc--CCCCceEecCCcccCC
Confidence 310 1457888887665444
No 55
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.83 E-value=1.8e-08 Score=93.28 Aligned_cols=112 Identities=21% Similarity=0.200 Sum_probs=75.6
Q ss_pred EeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCCCCcch
Q 017513 86 VLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGVGAQHS 163 (370)
Q Consensus 86 ~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~G~tHs 163 (370)
.+-...+|.++++++.|+|++|.|.++.|.++. +..+.|.|.. ++ ..++|+|++. ++|++.|...+..
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~ts~~G-l~lm~e~l~~-a~--------~~~~P~V~~~~~R~g~~~g~~~~~~ 107 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTATSGPG-LNLMAEPLYW-AA--------GTELPIVIVVVQRAGPSPGLSTQPE 107 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEEEECCH-HHHHCCCHHH-HH--------HTT--EEEEEEEB---SSSB--SB-
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEeecCCc-ccccHhHHHH-HH--------HcCCCEEEEEEECCCCCCCCcCcCC
Confidence 677888999999999999999999999997654 4566787754 33 3789998886 5665544333345
Q ss_pred HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccc
Q 017513 164 HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENEL 208 (370)
Q Consensus 164 ~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~ 208 (370)
|.|. ++...-++.|++|+|+||++++...|++ ...||+++.+..
T Consensus 108 q~D~-~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~ 155 (230)
T PF01855_consen 108 QDDL-MAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGF 155 (230)
T ss_dssp SHHH-HHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECC
T ss_pred hhHH-HHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechh
Confidence 6664 4444668999999999999999999986 479999987543
No 56
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.82 E-value=4.2e-08 Score=97.97 Aligned_cols=288 Identities=17% Similarity=0.210 Sum_probs=189.9
Q ss_pred cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhH-HHH-----hC--------CCc---EeechhhHHHH
Q 017513 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGL-LEK-----YG--------PER---VLDTPITEAGF 96 (370)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~-~~~-----~~--------p~r---~~~~GIaE~~~ 96 (370)
+-+++|..|-+-++-.++.+..|+-+-++|++ .|+|.-.... ..+ |- ... +-|..++|.+.
T Consensus 561 G~kiDWaTAEAlA~GSll~qG~nVRiSGqDVG--RGTFshRHAM~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAv 638 (913)
T KOG0451|consen 561 GVKIDWATAEALAIGSLLYQGHNVRISGQDVG--RGTFSHRHAMLVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAV 638 (913)
T ss_pred CCccchHHHHHHHHHHHHhccCceeeeccccC--cccccccceeeeeccccceeeeccccCCCcCCeeEeccccccHhhh
Confidence 55778999999999999999999999999999 3655421100 000 00 122 34678999999
Q ss_pred HHHHHHHhccC--CeeEEEcccchHHHHHHHHHHHH----hhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHH-HHH
Q 017513 97 TGIGVGAAYYG--LKPVVEFMTFNFSMQAIDHIINS----AAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCY-AAW 169 (370)
Q Consensus 97 v~~A~GlA~~G--~rp~~~t~~~~f~~ra~dqi~~~----~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~-~a~ 169 (370)
+|+-.|||... ..++++.++.+|..- -||+.| .+-.+|+ ....+|+..+.|..| -|+.||.+- +.+
T Consensus 639 LGFEyGmsienP~~L~iWEAQFGDFfNG--AQIIiDTFi~sgE~KWl----~ssglvmLLPHGyDG-AgpeHSSCRiERF 711 (913)
T KOG0451|consen 639 LGFEYGMSIENPNNLIIWEAQFGDFFNG--AQIIIDTFIVSGETKWL----ESSGLVMLLPHGYDG-AGPEHSSCRIERF 711 (913)
T ss_pred hhhhcccccCCcccceeehhhhcccccC--ceEEEeeeecccchhhh----hhCCeEEEccCCcCC-CCCccchhhHHHH
Confidence 99999999994 679999998888642 233322 2334443 344677777777653 367887665 455
Q ss_pred Hc-----------cCCCcEEEeeCCHHHHHHHHHHHHh--CCCCEEEEecccccCCCCCCc--cc-ccCCCcccccCceE
Q 017513 170 YA-----------SVPGLKVLSPYSSEDARGLLKAAIR--DPDPVVFLENELLYGESFPVS--AE-VLDSSFCLPIGKAK 233 (370)
Q Consensus 170 ~~-----------~iP~~~V~~P~d~~e~~~~l~~a~~--~~~Pv~i~~~~~l~~~~~~~~--~~-~~~~~~~~~~Gk~~ 233 (370)
+. .--||.|+.|.++.+++.+++.-+- ...|.++..||.+.+-+-..+ .+ -|+..|.-.+|...
T Consensus 712 LQlCDS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKPLiVv~PK~LLRlPaA~ST~~ef~PGTtf~nVigd~~ 791 (913)
T KOG0451|consen 712 LQLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKPLIVVAPKTLLRLPAATSTHEEFQPGTTFHNVIGDTI 791 (913)
T ss_pred HHHhccccccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCceEEechHHHhhCcchhhhHhhcCCCccccccccccc
Confidence 43 1237999999999999999986553 479999998887655210000 00 12222222344321
Q ss_pred EeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC----eEEEEecCCCCCChHHHH
Q 017513 234 IEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN----RLVTVEEGFPQHGVGAEI 309 (370)
Q Consensus 234 vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~----~vvvvEe~~~~GGlg~~i 309 (370)
.--+.-+-+|+++|--.....++.+.+..+. .+.++.+.+|-|||.+.+.+.++|++ .|..=||+...|-| +.|
T Consensus 792 ~~p~kvkkvifcSGKH~y~l~k~Re~rgakd-~~AI~RvE~LCPFPi~~LQa~l~kY~~vqdfvWSQEEprNmGaW-sFV 869 (913)
T KOG0451|consen 792 AKPEKVKKVIFCSGKHYYTLAKEREKRGAKD-TVAILRVESLCPFPIQELQAQLAKYGNVQDFVWSQEEPRNMGAW-SFV 869 (913)
T ss_pred cChhHheEEEEecCcchhhHHHHHHhccccc-ceeeEehhhcCCCchHHHHHHHHhcCChhhhcccccccccCCcc-eee
Confidence 1112346789999988887777777665443 48899999999999999999999886 45677777655544 444
Q ss_pred HHHHHhhccCCCCCCEEEEecCCCCCC
Q 017513 310 CASVIEESFGYLDAPVERIAGADVPMP 336 (370)
Q Consensus 310 ~~~l~~~~~~~l~~~~~~ig~~d~~~~ 336 (370)
.-... +. ++.++..+|-+..+.+
T Consensus 870 rPRFE-n~---lg~~L~~~GRpelp~p 892 (913)
T KOG0451|consen 870 RPRFE-NL---LGQQLHYCGRPELPTP 892 (913)
T ss_pred chHHH-HH---hhhhheecCCCCCCCc
Confidence 44432 21 3456666776666655
No 57
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.80 E-value=1.5e-07 Score=96.24 Aligned_cols=286 Identities=18% Similarity=0.190 Sum_probs=190.7
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccc-----------------hhHHHHhCCCcEeechhhHHHHH
Q 017513 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKIS-----------------KGLLEKYGPERVLDTPITEAGFT 97 (370)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~-----------------~~~~~~~~p~r~~~~GIaE~~~v 97 (370)
+.+.|.-+-+-++..|+++.-.|-+-|+|+. -|+|.-. +.+.....|=-+-|..++|-+.+
T Consensus 647 ~~iDwal~EalAFgsLl~EG~hVRlSGQDVE--RGTFShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVL 724 (1017)
T KOG0450|consen 647 EGVDWALAEALAFGSLLKEGIHVRLSGQDVE--RGTFSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVL 724 (1017)
T ss_pred cccchHHHHHHHHHHHHhcCceEEeeccccc--ccccccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhhee
Confidence 3455666666667788888999999999997 3555421 12211111233568899999999
Q ss_pred HHHHHHhcc--CCeeEEEcccchHH---HHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHH-HHHHHc
Q 017513 98 GIGVGAAYY--GLKPVVEFMTFNFS---MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHC-YAAWYA 171 (370)
Q Consensus 98 ~~A~GlA~~--G~rp~~~t~~~~f~---~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~-~~a~~~ 171 (370)
|+-.|.|++ ....+++.+|.+|. |..+||++ ..+-.+| .....+|+..+.|.. |.|+.||.. .+.++.
T Consensus 725 GFElGYsm~sPNaLVlWEAQFGDFaNtAQ~IiDQFI-ssGqaKW----~rqsGlVllLPHGye-G~GPEHSSaR~ERfLQ 798 (1017)
T KOG0450|consen 725 GFELGYSMASPNALVLWEAQFGDFANTAQCIIDQFI-SSGQAKW----VRQSGLVLLLPHGYE-GMGPEHSSARPERFLQ 798 (1017)
T ss_pred cceecccccCCCceEEeehhhccccccchhhHHhHh-ccchhhh----hhhcCeEEEccCCcC-CCCcccccccHHHHHH
Confidence 999999999 57889999999996 67889986 3344444 356678888887764 568888542 244332
Q ss_pred --------------------cCCCcEEEeeCCHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCCc--ccccCCCccc
Q 017513 172 --------------------SVPGLKVLSPYSSEDARGLLKAAIRD--PDPVVFLENELLYGESFPVS--AEVLDSSFCL 227 (370)
Q Consensus 172 --------------------~iP~~~V~~P~d~~e~~~~l~~a~~~--~~Pv~i~~~~~l~~~~~~~~--~~~~~~~~~~ 227 (370)
..=||+|+.+++|...+.+++.-+.. ..|.+|+.||.|.+.+...+ .+. ++...|
T Consensus 799 m~nddp~~~p~~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef-~~g~~f 877 (1017)
T KOG0450|consen 799 MSNDDPDVFPDEEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEF-DEGTGF 877 (1017)
T ss_pred hccCCCccCCcccHHHHHHHhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHh-ccCCCC
Confidence 12379999999999999999988864 69999999998766432111 011 011111
Q ss_pred -----ccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC--eEEEE-ecC
Q 017513 228 -----PIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN--RLVTV-EEG 299 (370)
Q Consensus 228 -----~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~--~vvvv-Ee~ 299 (370)
+-|+...-.++-+-+|+++|..+....++.+....+ -++.+..+.+|.||+.+.+.+.++++. .|+.+ |||
T Consensus 878 q~vi~e~g~~~~~pe~vkrlv~csGkVyydL~k~Rk~~~~~-~~vAi~RvEQl~PFp~dli~~e~~~YpnaEivWcQEE~ 956 (1017)
T KOG0450|consen 878 QRVIPEDGKAAQNPENVKRLVFCSGKVYYDLTKERKEVGLE-GDVAITRVEQLSPFPFDLIQQELNKYPNAEIVWCQEEH 956 (1017)
T ss_pred ceeccccccccCChhhceEEEEecceEehhhhHHHHhcCcc-cceeEEEeeccCCCcHHHHHHHHHhCCCceeeehhhhh
Confidence 123333223567889999999888777666655322 278899999999999999999999885 45555 556
Q ss_pred CCCCChHHHHHHHHHhhccCCCCCCEEEEecCC
Q 017513 300 FPQHGVGAEICASVIEESFGYLDAPVERIAGAD 332 (370)
Q Consensus 300 ~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d 332 (370)
...|.| +.+.-.+... .+.+..++...|-.+
T Consensus 957 ~NmG~w-~Yv~PRl~T~-l~~~~r~v~Y~GR~P 987 (1017)
T KOG0450|consen 957 KNMGAW-DYVEPRLRTA-LKRLARPVKYAGRLP 987 (1017)
T ss_pred cccCch-hhcchHHHHH-HHhhCCcceecccCC
Confidence 554544 4444333221 112344666666444
No 58
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=1.1e-06 Score=90.54 Aligned_cols=261 Identities=16% Similarity=0.183 Sum_probs=154.0
Q ss_pred cccHHHHHHHHHHHHHhcCCC-eEEecCCCCCCCCccccchhHHHHh------------CCCcEeechhhHHHHHHHHHH
Q 017513 36 QMMVREALNSALDEEMSADPK-VFLMGEEVGEYQGAYKISKGLLEKY------------GPERVLDTPITEAGFTGIGVG 102 (370)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~~~~-ivvi~~Dl~~~~g~~~~~~~~~~~~------------~p~r~~~~GIaE~~~v~~A~G 102 (370)
+.....++++-+.++++.|++ ..++++|-..+.+..++.......+ ...|+++ .++|+++.|.+.|
T Consensus 400 ~~~~t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwleg 478 (793)
T COG3957 400 TAESTTALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEG 478 (793)
T ss_pred chhhHHHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHH
Confidence 344468899999999999998 9999999765544333322222211 1367777 8999999999999
Q ss_pred HhccCCeeEEEcccchHHHHHHHHHHHHhhhc-------cccCCCCcccCEEEEeCCCC--CCCCCCcchH-HHHHHH-c
Q 017513 103 AAYYGLKPVVEFMTFNFSMQAIDHIINSAAKS-------NYMSSGQISVPIVFRGPNGA--AAGVGAQHSH-CYAAWY-A 171 (370)
Q Consensus 103 lA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~-------~~~~~g~~~~pvv~~~~~G~--~~~~G~tHs~-~~~a~~-~ 171 (370)
.++.|.+.++++|- .|+.- .|.+.++-+++ .|+.. ...++.++ .++. .+.+|-||+. .++..+ .
T Consensus 479 y~LtGr~glf~sYE-aF~~i-v~sm~nQh~kwl~v~~e~~wr~~-~~Sln~l~--TS~vw~QdhNGfsHQdPgf~~~~~~ 553 (793)
T COG3957 479 YLLTGRHGLFASYE-AFAHI-VDSMFNQHAKWLKVTREVEWRRP-IPSLNYLL--TSHVWRQDHNGFSHQDPGFIDHVAN 553 (793)
T ss_pred HHhcCCccceeeHH-HHHHH-HHHHHhhhHHHHHHHHhcccCCC-CCccccee--ehhhhhcccCCCccCCchHHHHHHh
Confidence 99999999999987 45421 22222222221 11110 11222222 2332 3457889943 234333 3
Q ss_pred cCC-CcEEEeeCCHHHHHHHHHHHHhCCCCEEE-EecccccCCCCCCcccccCCC---cccccC--ceEEee-e--CCcE
Q 017513 172 SVP-GLKVLSPYSSEDARGLLKAAIRDPDPVVF-LENELLYGESFPVSAEVLDSS---FCLPIG--KAKIER-E--GKDV 241 (370)
Q Consensus 172 ~iP-~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i-~~~~~l~~~~~~~~~~~~~~~---~~~~~G--k~~vl~-~--g~dv 241 (370)
..+ .+.|+.|.|++-+..++.++++..+-+.+ ..+|...+ ...+-+ --..-| -++... + +.|+
T Consensus 554 k~~d~vRvyfPpDaNtlLav~d~~l~s~n~in~iVa~K~p~p-------q~~t~~qA~~~~~~G~~iwewas~d~gepdv 626 (793)
T COG3957 554 KKSDIVRVYFPPDANTLLAVYDHCLRSRNKINVIVASKQPRP-------QWLTMEQAEKHCTDGAGIWEWASGDDGEPDV 626 (793)
T ss_pred hccCceeEecCCCCcchhhhhhHHhhccCceEEEEecCCCcc-------eeecHHHHHHHhhcCcEEEEeccCCCCCCCE
Confidence 333 57899999999999999999997543333 33332111 000000 001112 122221 1 3589
Q ss_pred EEEEechh-HHHHHHHHHHHHhcC--CceeEEE---eccccCC-------CHHHHHHHHhcCCeEEEEecCCCCCChHHH
Q 017513 242 TITAFSKI-VGLSLKAAEILAKEG--ISAEVIN---LRSIRPL-------DRSTINASVRKTNRLVTVEEGFPQHGVGAE 308 (370)
Q Consensus 242 ~Iia~G~~-~~~al~Aa~~L~~~G--i~v~Vi~---~~~l~P~-------d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~ 308 (370)
++.+.|.+ +.++++|+..|++++ ++++||+ +..|.|- +.+.+.+..-..++++.. +.|....
T Consensus 627 V~A~~Gd~~t~e~laAa~~L~e~~p~l~vRvVnVvdl~rLq~~~~hphg~~d~efd~lFt~d~pvif~-----fHGy~~l 701 (793)
T COG3957 627 VMACAGDVPTIEVLAAAQILREEGPELRVRVVNVVDLMRLQPPHDHPHGLSDAEFDSLFTTDKPVIFL-----FHGYPWL 701 (793)
T ss_pred EEEecCCcchHHHHHHHHHHHHhCccceEEEEEEecchhccCCccCCCCCCHHHHHhcCCCCcceeee-----ecCcHHH
Confidence 99999954 578999999999998 7777555 4555443 234455544444555432 2454544
Q ss_pred HHHHHH
Q 017513 309 ICASVI 314 (370)
Q Consensus 309 i~~~l~ 314 (370)
|-..+.
T Consensus 702 i~~L~y 707 (793)
T COG3957 702 IHALTY 707 (793)
T ss_pred hhhhhe
Confidence 444443
No 59
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=98.61 E-value=3.4e-07 Score=97.03 Aligned_cols=268 Identities=18% Similarity=0.226 Sum_probs=175.1
Q ss_pred cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcccc----------------chhHHHHhCCCcEeechhhHHHHH
Q 017513 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKI----------------SKGLLEKYGPERVLDTPITEAGFT 97 (370)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~----------------~~~~~~~~~p~r~~~~GIaE~~~v 97 (370)
.....|..|-.-+...++.....+.+-++|.+ .|+|.- +..+....+.=..+|.+.+|.+++
T Consensus 563 ~~~iDW~~aE~LAfatll~eG~~iRlsGqDs~--RGTF~hRHaVlhdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvl 640 (906)
T COG0567 563 GQGIDWGMAETLAFATLLDEGHPIRLSGQDSG--RGTFSHRHAVLHDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVL 640 (906)
T ss_pred ccccchhHHHHhcccceeccCCccccccccCC--CcCccccceeeecccCccccChhhhcccccceEEEEechhhHHHHH
Confidence 44566766666666778888889999999987 344431 222222222335689999999999
Q ss_pred HHHHHHhccC--CeeEEEcccchHH---HHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchH-HHHHHHc
Q 017513 98 GIGVGAAYYG--LKPVVEFMTFNFS---MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWYA 171 (370)
Q Consensus 98 ~~A~GlA~~G--~rp~~~t~~~~f~---~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~-~~~a~~~ 171 (370)
++=.|-|..- ...+++-++++|. |..+||...+ +-..| .....+|+..+.|.- |.|+.||. -.+.++.
T Consensus 641 gFEYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfisS-ge~KW----~r~sgLv~lLPHgyE-GQGPEHSSaRlER~LQ 714 (906)
T COG0567 641 GFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISS-GEQKW----GRMSGLVMLLPHGYE-GQGPEHSSARLERFLQ 714 (906)
T ss_pred hhhhhhhhcCCchhhhhhhhhcccccCCeeeecccccc-HHHHH----HHhcCceEEccCCCC-CCCCcCccchhHHHHH
Confidence 9999999984 4667788888886 5778887532 22332 245667777776654 45889955 4466664
Q ss_pred --cCCCcEEEeeCCHHHHHHHHHHHHhC--CCCEEEEecccccCCCCCCcc--cccCCCcccccCceEEeeeCCcEEEEE
Q 017513 172 --SVPGLKVLSPYSSEDARGLLKAAIRD--PDPVVFLENELLYGESFPVSA--EVLDSSFCLPIGKAKIEREGKDVTITA 245 (370)
Q Consensus 172 --~iP~~~V~~P~d~~e~~~~l~~a~~~--~~Pv~i~~~~~l~~~~~~~~~--~~~~~~~~~~~Gk~~vl~~g~dv~Iia 245 (370)
.--||+|..|+++.+.+.+++.-+.. ..|.+++.||.+.+.+...+. ++....+...++........-+.+++|
T Consensus 715 LcaE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S~~~el~~~~F~~vl~d~~~~~~~v~rvvlc 794 (906)
T COG0567 715 LCAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSSLEELTEGTFQPVLEDIDELDPKVKRVVLC 794 (906)
T ss_pred hhHHhCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCCchhhhchhhhhhhhccccccccceeeEEee
Confidence 34599999999999999999765543 689999999887765321111 111111111111111111224567889
Q ss_pred echhHHHHHHHHHHHHhcC-CceeEEEeccccCCCHHHHHHHHhcCC---eEEEE-ecCCCCCChHHHHHHHH
Q 017513 246 FSKIVGLSLKAAEILAKEG-ISAEVINLRSIRPLDRSTINASVRKTN---RLVTV-EEGFPQHGVGAEICASV 313 (370)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~G-i~v~Vi~~~~l~P~d~~~i~~~~~~~~---~vvvv-Ee~~~~GGlg~~i~~~l 313 (370)
+|-+.....+.. ++.| .++.++.+.+|.||+.+.+.+.++++- .++.+ ||....|.|. .+...+
T Consensus 795 SGKvyydl~~~r---~~~g~~dvaiiRiEqLyPfP~~~l~~~l~~y~~~~e~vW~QEEp~N~Gaw~-~~~~~l 863 (906)
T COG0567 795 SGKVYYDLLEQR---EKDGRDDVAIVRIEQLYPFPAKALAALLAKYPNVKEFVWCQEEPKNQGAWY-YIQPHL 863 (906)
T ss_pred ccchHHHHHHHH---hhcCCcceeEEeeecccCchHHHHHHHHHhccccccccccccCCCccccHH-HHHHHH
Confidence 998888766544 3444 378899999999999999999998773 34444 4444445554 344444
No 60
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.70 E-value=0.0032 Score=54.60 Aligned_cols=110 Identities=19% Similarity=0.207 Sum_probs=76.2
Q ss_pred CCcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCC---
Q 017513 83 PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG--- 159 (370)
Q Consensus 83 p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G--- 159 (370)
.-|++.+- .|++++.+|.|.++.|.+..+.+..|. +..+.+.+.+... .+.|++++...-.....+
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~~~gpG-~~n~~~~l~~a~~---------~~~P~v~i~g~~~~~~~~~~~ 109 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGARAMTATSGPG-LNLMAEALYLAAG---------AELPLVIVVAQRPGPSTGLPK 109 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEeeCcch-HHHHHHHHHHHHh---------CCCCEEEEEeeCCCCCCCCCC
Confidence 46788888 999999999999999988767776654 4557787765332 468999886321211112
Q ss_pred CcchHHHH-HHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEe
Q 017513 160 AQHSHCYA-AWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (370)
Q Consensus 160 ~tHs~~~~-a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~ 205 (370)
..|+..+. .+++. -..++.+.+++|+..+++.|++ .++||+++.
T Consensus 110 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 110 PDQSDLMAARYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred cCcHHHHHHHhCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 22322332 34433 5678889999999999998886 258999974
No 61
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=97.45 E-value=0.0056 Score=53.73 Aligned_cols=152 Identities=11% Similarity=0.090 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhcCC-CeEEecCCCCCCCCccccchhHHHHh-------------CCCcEeechhhHHHHHHHHHHHhcc
Q 017513 41 EALNSALDEEMSADP-KVFLMGEEVGEYQGAYKISKGLLEKY-------------GPERVLDTPITEAGFTGIGVGAAYY 106 (370)
Q Consensus 41 ~a~~~~L~~l~~~~~-~ivvi~~Dl~~~~g~~~~~~~~~~~~-------------~p~r~~~~GIaE~~~v~~A~GlA~~ 106 (370)
.++++-|.++++.|+ +.-++++|-..|.....+.+...+.+ .+++-+..-++|+...|...|..+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 467888888888777 68999999765544322221111111 1346666779999999999999999
Q ss_pred CCeeEEEcccchH--HHHHHHHHHHHh---hhccccCCCCcccCE-EEEeCCC--CCCCCCCcchHHH-H-HHHccCC-C
Q 017513 107 GLKPVVEFMTFNF--SMQAIDHIINSA---AKSNYMSSGQISVPI-VFRGPNG--AAAGVGAQHSHCY-A-AWYASVP-G 175 (370)
Q Consensus 107 G~rp~~~t~~~~f--~~ra~dqi~~~~---a~~~~~~~g~~~~pv-v~~~~~G--~~~~~G~tHs~~~-~-a~~~~iP-~ 175 (370)
|..-++.+|-+|. +.-++.|-...+ ....|+ .++|- -++..+. ....+|-||+.+- + .++...| -
T Consensus 82 Grhglf~sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR----~~~~SlN~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~ 157 (179)
T PF03894_consen 82 GRHGLFASYEAFAHIVDSMLNQHAKWLRHARELPWR----APIPSLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDV 157 (179)
T ss_dssp T-EEEEEEEGGGGGGGHHHHHHHHHHHHHHHH-TTS-------B-EEEEEES-CCG-TTT-GGG---THHHHHHCC--T-
T ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHHhCcCC----CCCcceeEEeeccceecCCCCcccCCChHHHHHHhcCccc
Confidence 9999999988555 233444432211 222332 33332 2222222 2345899994432 3 4554444 5
Q ss_pred cEEEeeCCHHHHHHHHHHHHh
Q 017513 176 LKVLSPYSSEDARGLLKAAIR 196 (370)
Q Consensus 176 ~~V~~P~d~~e~~~~l~~a~~ 196 (370)
+.||.|.|++-+..++..+++
T Consensus 158 ~RvylPpDANtlLav~~~clr 178 (179)
T PF03894_consen 158 VRVYLPPDANTLLAVMDHCLR 178 (179)
T ss_dssp EEEEE-SSHHHHHHHHHHHHH
T ss_pred ceeecCCcHhHHHHHHHHHhc
Confidence 799999999999999998875
No 62
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.13 E-value=0.0061 Score=52.47 Aligned_cols=112 Identities=20% Similarity=0.142 Sum_probs=73.3
Q ss_pred CcEeechhhHHHHHHHHHHHhccCC-eeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC-CCCCCCCCc
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYYGL-KPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GAAAGVGAQ 161 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~G~-rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-G~~~~~G~t 161 (370)
-|++.+- .|.+++.+|.|.++.+. .+++.+.+......+++.+.+.. ..++|++++... +.....-.+
T Consensus 35 ~~~i~~~-~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A~---------~~~~Pll~i~~~~~~~~~~~~~ 104 (155)
T cd07035 35 IRYILVR-HEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANAY---------LDSIPLLVITGQRPTAGEGRGA 104 (155)
T ss_pred CEEEEeC-CHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHHH---------hhCCCEEEEeCCCccccccCCc
Confidence 4556554 99999999999999955 44444443345556777776533 368999998632 221111112
Q ss_pred chHHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEec
Q 017513 162 HSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLEN 206 (370)
Q Consensus 162 Hs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~ 206 (370)
|+..+ ..+++.+-.+ .+...+++|+...+..|++ . ++||+|..|
T Consensus 105 ~q~~d~~~~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 105 FQEIDQVALFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred ccccCHHHHHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 32233 4677777655 6777889999998888886 2 579999654
No 63
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.84 E-value=0.024 Score=49.85 Aligned_cols=126 Identities=19% Similarity=0.141 Sum_probs=77.4
Q ss_pred cchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEc-ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC
Q 017513 73 ISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF-MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP 151 (370)
Q Consensus 73 ~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t-~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~ 151 (370)
+.+.+.+.- -=|++. .-.|++++.+|.|.++.+.||-+.+ .+......+..-+.+ ++ ..+.||+++..
T Consensus 30 l~~al~~~~-~i~~i~-~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l~~--A~-------~~~~Pvl~i~g 98 (172)
T PF02776_consen 30 LLDALEKSP-GIRFIP-VRHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGLAN--AY-------ADRIPVLVITG 98 (172)
T ss_dssp HHHHHHHTT-TSEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHHHH--HH-------HTT-EEEEEEE
T ss_pred HHHHhhhhc-ceeeec-ccCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHHhh--cc-------cceeeEEEEec
Confidence 344444442 246777 4599999999999998855544443 332334455555543 22 26899988863
Q ss_pred -CCC-CCCCCCcc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEeccccc
Q 017513 152 -NGA-AAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY 210 (370)
Q Consensus 152 -~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l~ 210 (370)
.+. ..+.+..| ..+..++++.+-.+ .+.+.+++++...++.|++ .++|++|..|..+.
T Consensus 99 ~~~~~~~~~~~~q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~dv~ 164 (172)
T PF02776_consen 99 QRPSAGEGRGAFQQEIDQQSLFRPVTKW-SYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQDVQ 164 (172)
T ss_dssp ESSGGGTTTTSTTSSTHHHHHHGGGSSE-EEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHHHH
T ss_pred ccchhhhcccccccchhhcchhccccch-hcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChhHh
Confidence 222 22345556 33335788887654 6777777777777777664 47999998776543
No 64
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.51 E-value=0.025 Score=49.22 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=65.4
Q ss_pred hhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCCCCCcc--hHHH
Q 017513 90 PITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQH--SHCY 166 (370)
Q Consensus 90 GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~~G~tH--s~~~ 166 (370)
.-.|..++++|+|..+.|.+|.+.+..+... .+..-+.... . ..++||+++.. -|..+..-+.| ....
T Consensus 40 ~~~ee~aa~~aAg~~~~~~~~~v~~~~sG~g-n~~~~l~~a~--~------~~~~Pvl~i~g~rg~~~~~~~~q~~~g~~ 110 (157)
T TIGR03845 40 LTREEEGVGICAGAYLAGKKPAILMQSSGLG-NSINALASLN--K------TYGIPLPILASWRGVYKEKIPAQIPMGRA 110 (157)
T ss_pred cCChHHHHHHHHHHHHhcCCcEEEEeCCcHH-HHHHHHHHHH--H------cCCCCEEEEEeccCCCCCCCccccchhhh
Confidence 5588888899999999999999998876644 5666654322 1 25799998862 23221111111 1111
Q ss_pred -HHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccc
Q 017513 167 -AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENEL 208 (370)
Q Consensus 167 -~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~ 208 (370)
+..|..+ ++......+++|+ ..+..|++ .++|++|+.++.
T Consensus 111 ~~~~l~~~-~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~ 155 (157)
T TIGR03845 111 TPKLLDTL-GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPK 155 (157)
T ss_pred hHHHHHHc-CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCC
Confidence 2333322 2235555667777 77777664 469999986543
No 65
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=96.39 E-value=0.024 Score=56.03 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=74.3
Q ss_pred CcEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhh-hccccCCCCcccCEEEEeC-CCCCC-CCC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAA-KSNYMSSGQISVPIVFRGP-NGAAA-GVG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a-~~~~~~~g~~~~pvv~~~~-~G~~~-~~G 159 (370)
.|++-+- .|..++++|+|+.++ |.+|++..|.+. +..+...+. +++ .. .-++|++++.. -|..+ .+-
T Consensus 27 ~~~i~~~-~E~~av~iaaG~~latG~~~~v~mQnSG-lGn~vN~l~-SL~~~~------~y~iP~l~~i~~RG~~g~~de 97 (361)
T TIGR03297 27 LRHVIAA-NEGAAVGLAAGAYLATGKRAAVYMQNSG-LGNAVNPLT-SLADTE------VYDIPLLLIVGWRGEPGVHDE 97 (361)
T ss_pred ceEEecC-CchHHHHHHHHHHHhcCCccEEEEecCc-hhhhhhHHH-hhcccc------ccCcCeeEEEecCCCCCCCCC
Confidence 3565554 799999999999999 999999999854 445666553 231 01 24788877753 35444 466
Q ss_pred Ccch--HHH-HHHHcc--CCCcEEEeeCCHHHHHHHHH----HHHhCCCCEEEEeccccc
Q 017513 160 AQHS--HCY-AAWYAS--VPGLKVLSPYSSEDARGLLK----AAIRDPDPVVFLENELLY 210 (370)
Q Consensus 160 ~tHs--~~~-~a~~~~--iP~~~V~~P~d~~e~~~~l~----~a~~~~~Pv~i~~~~~l~ 210 (370)
++|. ... ..+|.. ||... + |.+..|....+. ++++.+.|+.++.++...
T Consensus 98 pqh~~~G~~t~~lL~~~~i~~~~-~-~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 98 PQHVKQGRITLSLLDALEIPWEV-L-STDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred chhhHHhHHHHHHHHHcCCCEEE-C-CCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 7772 222 467764 56332 2 455555555554 445568999998876543
No 66
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=96.26 E-value=0.47 Score=49.66 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=72.9
Q ss_pred cEeechhhHHHHHHHHHHHhccCCee-E-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CCCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYYGLKP-V-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~G~rp-~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~~G~ 160 (370)
|++.+- .|++++.+|.|.|+.--+| + +.|..| .+..++.-|.+. + ..++||+++...... .+.+.
T Consensus 48 ~~v~~r-hE~~A~~~Adgyar~tg~~gv~~~t~Gp-G~~N~~~gi~~A--~-------~~~~Pvl~i~g~~~~~~~~~~~ 116 (557)
T PRK08199 48 RVIVCR-QEGGAAMMAEAYGKLTGRPGICFVTRGP-GATNASIGVHTA--F-------QDSTPMILFVGQVARDFREREA 116 (557)
T ss_pred cEEEec-cHHHHHHHHHHHHHhcCCCEEEEeCCCc-cHHHHHHHHHHH--h-------hcCCCEEEEecCCccccCCCCc
Confidence 566654 8999999999999984443 3 334444 444556655432 2 378999988632221 12333
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccccC
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELLYG 211 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l~~ 211 (370)
.|..+..++++.+-.+ .....+++++...++.|++ . ++||+|..|..+..
T Consensus 117 ~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl~~ 171 (557)
T PRK08199 117 FQEIDYRRMFGPMAKW-VAEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDVLS 171 (557)
T ss_pred ccccCHHHhhhhhhce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHhh
Confidence 3432225788876655 3344788888888887775 2 58999988866543
No 67
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=95.82 E-value=0.17 Score=44.27 Aligned_cols=112 Identities=14% Similarity=0.061 Sum_probs=71.6
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~ 160 (370)
|++. .-.|+++..+|-|.|+. |...+ +.+..| .+..++.-+.+.. ..++||+++....... +.+.
T Consensus 40 ~~v~-~rhE~~A~~mA~gyar~tg~~~v~~~t~Gp-G~~n~~~~l~~A~---------~~~~Pvl~I~g~~~~~~~~~~~ 108 (164)
T cd07039 40 EFIQ-VRHEEAAAFAASAEAKLTGKLGVCLGSSGP-GAIHLLNGLYDAK---------RDRAPVLAIAGQVPTDELGTDY 108 (164)
T ss_pred eEEE-eCCHHHHHHHHHHHHHHhCCCEEEEECCCC-cHHHHHHHHHHHH---------hcCCCEEEEecCCcccccCCCC
Confidence 4554 45999999999999999 43333 334344 4445666665433 3689999986322222 2233
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccc
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENEL 208 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~ 208 (370)
.|..+...+++.+-.+ ...+.++.++...++.|++ .++||+|-.|..
T Consensus 109 ~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 109 FQEVDLLALFKDVAVY-NETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred CcccCHHHHHHHhhcE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 3322225788887765 5666788888888887775 369999976543
No 68
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=95.72 E-value=0.21 Score=43.32 Aligned_cols=113 Identities=17% Similarity=0.126 Sum_probs=64.6
Q ss_pred hCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCc-ccCEEEEe-CCCCCC--
Q 017513 81 YGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQI-SVPIVFRG-PNGAAA-- 156 (370)
Q Consensus 81 ~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~-~~pvv~~~-~~G~~~-- 156 (370)
..|.+|+..| +=-..+..|.|++++-.+|+++... +.....--|-...++ .. ++|++++. ..+..+
T Consensus 33 ~~~~~~~~~g-smG~~lp~AiGa~~a~~~~Vv~i~G-DG~f~m~~~el~t~~--------~~~~~~i~~vV~nN~~~g~~ 102 (157)
T cd02001 33 DRDGHFYMLG-SMGLAGSIGLGLALGLSRKVIVVDG-DGSLLMNPGVLLTAG--------EFTPLNLILVVLDNRAYGST 102 (157)
T ss_pred cCCCCEEeec-chhhHHHHHHHHHhcCCCcEEEEEC-chHHHhcccHHHHHH--------HhcCCCEEEEEEeCcccccc
Confidence 3388998755 2223445788887764478877754 443211112222233 24 47887765 332211
Q ss_pred CCCCcch-HHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 157 GVGAQHS-HCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 157 ~~G~tHs-~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
+.-.++. ..+ ..+...+ |+.-....+++|+...++.+++.++|++|-
T Consensus 103 ~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gp~vi~ 151 (157)
T cd02001 103 GGQPTPSSNVNLEAWAAAC-GYLVLSAPLLGGLGSEFAGLLATTGPTLLH 151 (157)
T ss_pred CCcCCCCCCCCHHHHHHHC-CCceEEcCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1111221 222 3344442 555566789999999999999989999884
No 69
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=95.30 E-value=0.61 Score=49.20 Aligned_cols=115 Identities=11% Similarity=0.131 Sum_probs=72.2
Q ss_pred CcEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G 159 (370)
=|++.+- .|++++.+|.|.|+. |...++ .+..|.++ .++.-+.+. + ..++||+++...-... +.+
T Consensus 44 i~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~-n~~~gi~~A--~-------~~~~Pvl~I~g~~~~~~~~~~ 112 (588)
T PRK07525 44 IRFIDVA-HEQNAGHMADGYTRVTGRMGMVIGQNGPGIT-NFVTAVATA--Y-------WAHTPVVLVTPQAGTKTIGQG 112 (588)
T ss_pred CCEEEec-CHHHHHHHHHHHHHHhCCCEEEEEcCCccHH-HHHHHHHHH--h-------hcCCCEEEEeCCCCcccCCCC
Confidence 4666665 999999999999988 644443 34445444 455555432 2 3789999986321111 222
Q ss_pred CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccccc
Q 017513 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY 210 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~ 210 (370)
..+..+...+++.+-.+ .....+++++...++.|++ ..+||||-.|..+.
T Consensus 113 ~~q~~d~~~l~~~~tk~-~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv~ 166 (588)
T PRK07525 113 GFQEAEQMPMFEDMTKY-QEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDYF 166 (588)
T ss_pred CCcccchhhhhhhheeE-EEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhHh
Confidence 22222225788876543 5556778877777777764 46899998876543
No 70
>PRK08322 acetolactate synthase; Reviewed
Probab=95.16 E-value=0.94 Score=47.22 Aligned_cols=115 Identities=14% Similarity=0.070 Sum_probs=73.3
Q ss_pred CcEeechhhHHHHHHHHHHHhcc-CCeeEEE-cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~-t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G 159 (370)
=|++.+- .|++++.||.|.|+. |...++. |..|. +..++.-+.+. + ..++||+++...-... +.+
T Consensus 39 i~~i~~~-hE~~A~~~A~gyar~tg~~gv~~~t~GpG-~~N~~~~i~~A--~-------~~~~Pll~i~g~~~~~~~~~~ 107 (547)
T PRK08322 39 IKLILTR-HEQGAAFMAATYGRLTGKAGVCLSTLGPG-ATNLVTGVAYA--Q-------LGGMPMVAITGQKPIKRSKQG 107 (547)
T ss_pred CcEEEec-cHHHHHHHHHHHHHhhCCCEEEEECCCcc-HhHHHHHHHHH--h-------hcCCCEEEEeccccccccCCC
Confidence 3666654 999999999999998 5433333 44444 44455655432 2 3789999885321211 122
Q ss_pred CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEeccccc
Q 017513 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELLY 210 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l~ 210 (370)
..+..+..++++.+-.+ .....+++++..+++.|++. ++||+|-.|..+.
T Consensus 108 ~~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 162 (547)
T PRK08322 108 SFQIVDVVAMMAPLTKW-TRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDIA 162 (547)
T ss_pred ccccccHHHHhhhheeE-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhh
Confidence 22222225788887653 66777888888888887762 5899998876543
No 71
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=95.09 E-value=0.9 Score=47.33 Aligned_cols=113 Identities=12% Similarity=0.046 Sum_probs=72.9
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCe-eEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYY-GLK-PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~r-p~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~ 160 (370)
||+.+- .|+++..||-|.|+. |.. ..+.|..|..+ .++.-+.+ |+ ..++||+++....... +.+.
T Consensus 38 ~~i~~~-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~-n~l~gl~~--A~-------~~~~Pvl~I~G~~~~~~~~~~~ 106 (539)
T TIGR02418 38 ELIVVR-HEQNAAFMAQAVGRITGKPGVALVTSGPGCS-NLVTGLAT--AN-------SEGDPVVAIGGQVKRADLLKLT 106 (539)
T ss_pred CEEEeC-cHHHHHHHHHHHHHHhCCceEEEECCCCCHh-HHHHHHHH--Hh-------hcCCCEEEEeCCCcccccccCc
Confidence 677776 999999999999987 533 33445555444 45565543 22 3689999985311111 2233
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l 209 (370)
+|.....++++.+-.+ .....++.++...++.|++ . ++||+|-.|...
T Consensus 107 ~q~~d~~~~~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv 159 (539)
T TIGR02418 107 HQSMDNVALFRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDV 159 (539)
T ss_pred ccccchhhhhhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhH
Confidence 3433336888887654 4445778888777777765 2 589999887654
No 72
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=95.05 E-value=0.48 Score=49.74 Aligned_cols=114 Identities=18% Similarity=0.103 Sum_probs=73.2
Q ss_pred CCcEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CC
Q 017513 83 PERVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GV 158 (370)
Q Consensus 83 p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~ 158 (370)
+=+++.+ ..|++++.+|.|.|+. |...+ +.|..|. +..++.-+.+. + ..++||+++...-... +.
T Consensus 53 ~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG-~~N~~~gl~~A--~-------~~~~Pvl~ItG~~~~~~~~~ 121 (571)
T PRK07710 53 GIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPG-ATNVVTGLADA--M-------IDSLPLVVFTGQVATSVIGS 121 (571)
T ss_pred CCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHHH--h-------hcCCCEEEEeccCCccccCC
Confidence 4678876 8999999999999988 53333 3344554 44455655432 2 3689999885321211 22
Q ss_pred CCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEeccc
Q 017513 159 GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENEL 208 (370)
Q Consensus 159 G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~ 208 (370)
+..|..+..++++.+-.+ .....+++++..+++.|++ . ++||+|-.|..
T Consensus 122 ~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 122 DAFQEADIMGITMPVTKH-NYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred CCccccchhhhhhcccce-EEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence 333323335788887655 4455677777777777775 2 59999987754
No 73
>PRK12474 hypothetical protein; Provisional
Probab=95.02 E-value=3.7 Score=42.52 Aligned_cols=113 Identities=15% Similarity=0.077 Sum_probs=73.4
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~ 160 (370)
||+.+- .|++++.||-|.|+. |.-.+ +.|..|. ...++.-+.+.. ..++||+++....... +.+.
T Consensus 45 ~~i~~r-hE~~A~~mAdgYaR~tg~~gv~~~t~GpG-~~N~~~gl~~A~---------~d~~Pvl~i~G~~~~~~~~~~~ 113 (518)
T PRK12474 45 RPVLCL-FEGVVTGAADGYGRIAGKPAVTLLHLGPG-LANGLANLHNAR---------RAASPIVNIVGDHAVEHLQYDA 113 (518)
T ss_pred eEEEec-chHHHHHHHHHHHHHhCCCEEEEEccchh-HhHhHHHHHHHh---------hcCCCEEEEeccCchhhcCCCC
Confidence 677765 999999999999988 54443 3454554 444555554332 3689999885322211 1122
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l 209 (370)
.+..+..++++.+-.+ .....++.++..+++.|++ .++||+|-.|..+
T Consensus 114 ~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 114 PLTSDIDGFARPVSRW-VHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred ccccCHHHhhhcccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 2222225788876544 4567889999998888885 2589999888664
No 74
>PRK07586 hypothetical protein; Validated
Probab=95.01 E-value=0.5 Score=48.91 Aligned_cols=202 Identities=17% Similarity=0.029 Sum_probs=106.5
Q ss_pred cEeechhhHHHHHHHHHHHhccCCeeE-E-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYYGLKPV-V-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~G~rp~-~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~ 160 (370)
|++.+- .|++++.||.|.|+.--+|- + .|+.|. +..++.-+.+.. ..++||+++....... +.+.
T Consensus 41 ~~i~~r-hE~~A~~mAdgyar~tg~~gv~~~t~GPG-~~N~~~gl~~A~---------~~~~Pvl~i~G~~~~~~~~~~~ 109 (514)
T PRK07586 41 RCVLGL-FEGVATGAADGYARMAGKPAATLLHLGPG-LANGLANLHNAR---------RARTPIVNIVGDHATYHRKYDA 109 (514)
T ss_pred eEEEec-cHHHHHHHHHHHHHHHCCCEEEEecccHH-HHHHHHHHHHHH---------hcCCCEEEEecCCchhccCCCc
Confidence 666665 99999999999998844433 3 355554 445555554332 3789999885322221 1222
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccccCCCCCCcccccCCCcccccCc----
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGK---- 231 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk---- 231 (370)
.+..+...+++.+-.+ .....+++++...++.|++ . ++||||-.|........+................
T Consensus 110 ~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~v~ 188 (514)
T PRK07586 110 PLTSDIEALARPVSGW-VRRSESAADVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPPAPPPPAPAPAAVDPAAVE 188 (514)
T ss_pred ccccchhhhhccccce-eeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccccccCCCCCCCCCCHHHHH
Confidence 2222225788876433 5556777777777777765 2 5899998876543221100000000000000000
Q ss_pred --eEEee-eCCcEEEEEechhHHHHHHHHHHHHhc-CCceeEEE-------eccccC-----CCHHHHHHHHhcCCeEEE
Q 017513 232 --AKIER-EGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVIN-------LRSIRP-----LDRSTINASVRKTNRLVT 295 (370)
Q Consensus 232 --~~vl~-~g~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~-------~~~l~P-----~d~~~i~~~~~~~~~vvv 295 (370)
.+.++ ..+=++|++.|.....+.++..+|.++ |+-+-.-. -+.+-| .-.+...+.+++.+.|+.
T Consensus 189 ~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~~~~aDlvl~ 268 (514)
T PRK07586 189 AAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQLAGVRHLVL 268 (514)
T ss_pred HHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHHHhcCCEEEE
Confidence 01122 234577777776655666666666544 66542211 111222 112233456777787777
Q ss_pred Eec
Q 017513 296 VEE 298 (370)
Q Consensus 296 vEe 298 (370)
+--
T Consensus 269 vG~ 271 (514)
T PRK07586 269 VGA 271 (514)
T ss_pred ECC
Confidence 653
No 75
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.94 E-value=0.26 Score=43.12 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=63.6
Q ss_pred cEeechhhHHHHHHHHHHHhccCCeeEE--EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYYGLKPVV--EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~G~rp~~--~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~ 160 (370)
||+.+- .|++++.||-|.|+.--+|-+ .+..| .+..+..-+.+.. ..+.||+++....... +.+.
T Consensus 37 ~~v~~r-hE~~A~~mAdgyar~sg~~gv~~~t~Gp-G~~n~~~gl~~A~---------~~~~Pvl~i~g~~~~~~~~~~~ 105 (162)
T cd07037 37 RLHVRV-DERSAAFFALGLAKASGRPVAVVCTSGT-AVANLLPAVVEAY---------YSGVPLLVLTADRPPELRGTGA 105 (162)
T ss_pred eEEecc-ChHHHHHHHHHHHHhhCCCEEEEECCch-HHHHHhHHHHHHH---------hcCCCEEEEECCCCHHhcCCCC
Confidence 566654 999999999999998444433 33344 4445666665433 2689999986332222 2233
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHH------HHHHHHHHHh----C-CCCEEEEe
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSED------ARGLLKAAIR----D-PDPVVFLE 205 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e------~~~~l~~a~~----~-~~Pv~i~~ 205 (370)
.|..+..++++.+-.+ .....++++ +..+++.|++ . ++||++-.
T Consensus 106 ~q~~d~~~l~~~vtk~-~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~i 160 (162)
T cd07037 106 NQTIDQVGLFGDYVRW-SVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNL 160 (162)
T ss_pred CcccchhhhccceeeE-EEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEec
Confidence 3322224777776543 333344444 5555555554 3 58999853
No 76
>PRK07524 hypothetical protein; Provisional
Probab=94.90 E-value=1.1 Score=46.50 Aligned_cols=114 Identities=22% Similarity=0.146 Sum_probs=73.9
Q ss_pred cEeechhhHHHHHHHHHHHhccCCee-EE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--C--C
Q 017513 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--G--V 158 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~G~rp-~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~--~ 158 (370)
|++.+- .|++++.||-|.|+.--+| ++ .|..|.. ..++.-|.+. + ..++||+++...-... + .
T Consensus 41 ~~i~~~-hE~~A~~mAdgyar~tg~~gv~~~t~GpG~-~n~~~gi~~A--~-------~~~~Pvl~i~G~~~~~~~~~~~ 109 (535)
T PRK07524 41 RHVTPR-HEQGAGFMADGYARVSGKPGVCFIITGPGM-TNIATAMGQA--Y-------ADSIPMLVISSVNRRASLGKGR 109 (535)
T ss_pred cEEEec-cHHHHHHHHHHHHHHhCCCeEEEECCCccH-HHHHHHHHHH--H-------hcCCCEEEEeCCCChhhcCCCC
Confidence 667665 9999999999999885443 33 3555544 4455655432 2 3789999885211111 1 1
Q ss_pred CCcchHHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEeccccc
Q 017513 159 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY 210 (370)
Q Consensus 159 G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l~ 210 (370)
+..|...| .++++.+-- ......+++++...++.|++ .++||+|-.|+.+.
T Consensus 110 ~~~~~~~d~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 166 (535)
T PRK07524 110 GKLHELPDQRAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVL 166 (535)
T ss_pred ccccccccHHHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhHH
Confidence 23452223 578888654 35667788888888888775 25899998886543
No 77
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.83 E-value=0.44 Score=50.10 Aligned_cols=114 Identities=15% Similarity=0.061 Sum_probs=73.8
Q ss_pred CcEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G 159 (370)
=||+.+- .|++++.||-|.|+. |...++ .+..|. +..++.-|.+.. ..++||+++....... +.+
T Consensus 53 i~~i~~r-hE~~A~~mAdgyar~tg~~gv~~~t~GpG-~~N~~~gla~A~---------~~~~Pvl~I~G~~~~~~~~~~ 121 (570)
T PRK06725 53 LKHILTR-HEQAAIHAAEGYARASGKVGVVFATSGPG-ATNLVTGLADAY---------MDSIPLVVITGQVATPLIGKD 121 (570)
T ss_pred CcEEEec-CHHHHHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHHHh---------hcCcCEEEEecCCCcccccCC
Confidence 4677765 999999999999987 543343 344554 445555554322 3689999885322221 222
Q ss_pred CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l 209 (370)
..|..+...+++.+-.+ .....+++++..+++.|++. ++|||+..|..+
T Consensus 122 ~~q~~d~~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 175 (570)
T PRK06725 122 GFQEADVVGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDV 175 (570)
T ss_pred CCcccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccch
Confidence 33322224788887654 44557889999998888863 699999877654
No 78
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.69 E-value=0.75 Score=48.34 Aligned_cols=113 Identities=22% Similarity=0.128 Sum_probs=74.2
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeEEEc-ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEF-MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t-~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~ 160 (370)
||+.+- .|++++.||.|.|+. |...++.+ ..|. +..++.-+.+.. ..++||+++....... +.+.
T Consensus 44 ~~i~~r-hE~~A~~mAdgYar~tg~~gv~~~t~GPG-~~n~l~gi~~A~---------~~~~Pvl~i~G~~~~~~~~~~~ 112 (574)
T PRK07979 44 DHVLVR-HEQAAVHMADGLARATGEVGVVLVTSGPG-ATNAITGIATAY---------MDSIPLVVLSGQVATSLIGYDA 112 (574)
T ss_pred eEEEeC-cHHHHHHHHHHHHHHhCCceEEEECCCcc-HhhhHHHHHHHh---------hcCCCEEEEECCCChhccCCCC
Confidence 666654 899999999999987 65555444 4444 444556554322 3689999986322222 2333
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l 209 (370)
.|..+..++++.+-.+ .....+++++...++.|++ .++||||..|...
T Consensus 113 ~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 113 FQECDMVGISRPVVKH-SFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred CceecHHHHhhcccce-EEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 4433335788886654 4455688898888888886 2599999877654
No 79
>PRK08617 acetolactate synthase; Reviewed
Probab=94.69 E-value=0.67 Score=48.43 Aligned_cols=155 Identities=12% Similarity=0.029 Sum_probs=89.8
Q ss_pred cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCe-eE-
Q 017513 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLK-PV- 111 (370)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~r-p~- 111 (370)
+++++..+++.+.|.+.. =+-|+.-+.- ....+.+.+.+. .=|++.+- .|++++.+|.|.|+..-+ .+
T Consensus 2 ~~~~~~~~~l~~~L~~~G---V~~vFg~pG~----~~~~l~~al~~~--~i~~i~~~-hE~~A~~~A~gyar~tg~~gv~ 71 (552)
T PRK08617 2 DKKKYGADLVVDSLINQG---VKYVFGIPGA----KIDRVFDALEDS--GPELIVTR-HEQNAAFMAAAIGRLTGKPGVV 71 (552)
T ss_pred CccccHHHHHHHHHHHcC---CCEEEeCCCc----cHHHHHHHHhhC--CCCEEEec-cHHHHHHHHHhHhhhcCCCEEE
Confidence 455566666666665432 2333333211 112233444322 24566665 999999999999999433 33
Q ss_pred EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHH
Q 017513 112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARG 189 (370)
Q Consensus 112 ~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~ 189 (370)
+.|..|.++ .++.-+.+. + ..++||+++...-.. -+.+..|..+..++++.+-.+ .....++.++..
T Consensus 72 ~vt~GpG~~-N~l~gl~~A--~-------~~~~PvlvisG~~~~~~~~~~~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~ 140 (552)
T PRK08617 72 LVTSGPGVS-NLATGLVTA--T-------AEGDPVVAIGGQVKRADRLKRTHQSMDNVALFRPITKY-SAEVQDPDNLSE 140 (552)
T ss_pred EECCCCcHh-HhHHHHHHH--h-------hcCCCEEEEecCCcccccCCCCccccchhhhhhhhcce-EEEeCCHHHHHH
Confidence 345455544 455555432 2 368999988521111 122333322225788887654 555678888888
Q ss_pred HHHHHHh----C-CCCEEEEecccc
Q 017513 190 LLKAAIR----D-PDPVVFLENELL 209 (370)
Q Consensus 190 ~l~~a~~----~-~~Pv~i~~~~~l 209 (370)
.+..|++ . ++||+|-.|...
T Consensus 141 ~i~~A~~~a~~~~~GPV~l~iP~dv 165 (552)
T PRK08617 141 VLANAFRAAESGRPGAAFVSLPQDV 165 (552)
T ss_pred HHHHHHHHHccCCCCcEEEeChhhh
Confidence 8888776 2 589999877553
No 80
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=94.47 E-value=1.4 Score=45.90 Aligned_cols=114 Identities=15% Similarity=0.063 Sum_probs=71.6
Q ss_pred cEeechhhHHHHHHHHHHHhccCCeeEEE-cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCCc
Q 017513 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQ 161 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~G~rp~~~-t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~t 161 (370)
||+.+ -.|++++.+|.|.|+..-+|-++ +.+...+..++.-|.+.. ..++||+++....... +.+..
T Consensus 50 ~~i~~-~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gia~A~---------~~~~Pvl~i~g~~~~~~~~~~~~ 119 (530)
T PRK07092 50 RYVLG-LQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNLFTAF---------KNHTPLVITAGQQARSILPFEPF 119 (530)
T ss_pred CEEEE-ccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHHHHHh---------hcCCCEEEEecCCcccccCccch
Confidence 67754 59999999999999984444443 222233445666655432 3789999875322221 22332
Q ss_pred chHHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017513 162 HSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (370)
Q Consensus 162 Hs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l 209 (370)
|+..+ ..+++.+-.+... ..+++++...++.|++ . ++||+|-.|...
T Consensus 120 ~~~~d~~~l~~~~tk~~~~-v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~ 172 (530)
T PRK07092 120 LAAVQAAELPKPYVKWSIE-PARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDD 172 (530)
T ss_pred hcccCHHHhhcccccceee-cCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHH
Confidence 21123 5788887766444 4778888888877775 2 489999877543
No 81
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=94.17 E-value=1.6 Score=46.32 Aligned_cols=114 Identities=16% Similarity=0.054 Sum_probs=72.0
Q ss_pred CcEeechhhHHHHHHHHHHHhcc-CCeeEEE-cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCC--CC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG--VG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~-t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~--~G 159 (370)
=||+.+ -.|++++.+|.|.|+. |...++. +..|. +..++.-+.+ |+ ..++||+++........ .+
T Consensus 61 i~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG-~~n~l~gl~~--A~-------~d~~Pvl~i~G~~~~~~~~~~ 129 (616)
T PRK07418 61 LKHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPG-ATNLVTGIAT--AQ-------MDSVPMVVITGQVPRPAIGTD 129 (616)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHH--HH-------hcCCCEEEEecCCCccccCCC
Confidence 378888 6999999999999988 5444433 33444 4445555543 22 37899998863222222 22
Q ss_pred CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017513 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l 209 (370)
..|..+..++++.+-.+ .....+++++...++.|++ . ++||+|-.|..+
T Consensus 130 ~~Qe~d~~~~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv 183 (616)
T PRK07418 130 AFQETDIFGITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDV 183 (616)
T ss_pred CcccccHHHHhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhh
Confidence 33322224677766433 3456788888888888776 3 499999887654
No 82
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=94.16 E-value=1 Score=39.24 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=67.4
Q ss_pred cEeechhhHHHHHHHHHHHhccCCee-EEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC-
Q 017513 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA- 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~G~rp-~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~- 160 (370)
||+.+ -.|++++.||.|.++.-... ++.+..| .+..+..-+.+.. ..++||+++....... +.+.
T Consensus 37 ~~i~~-rhE~~A~~mA~gyar~t~~gv~~~t~Gp-G~~n~~~gl~~A~---------~~~~Pvl~i~g~~~~~~~~~~~~ 105 (162)
T cd07038 37 RWVGN-CNELNAGYAADGYARVKGLGALVTTYGV-GELSALNGIAGAY---------AEHVPVVHIVGAPSTKAQASGLL 105 (162)
T ss_pred eEEee-CCHHHHHHHHHHHHHhhCCEEEEEcCCc-cHHHHHHHHHHHH---------HcCCCEEEEecCCCccccccccc
Confidence 45544 59999999999999995222 2333344 4455667665432 3689999986322211 1111
Q ss_pred cc------hHHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEec
Q 017513 161 QH------SHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLEN 206 (370)
Q Consensus 161 tH------s~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~ 206 (370)
.| .+++ .++++.+=.+ .....++++...+++.|++ .++||+|-.|
T Consensus 106 ~~~~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 106 LHHTLGDGDFDVFLKMFEEITCA-AARLTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred eeecccccchHHHHHHHHhheeE-EEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 11 1123 5788876554 4445677888888877775 3589999654
No 83
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=94.11 E-value=1.1 Score=46.85 Aligned_cols=114 Identities=19% Similarity=0.112 Sum_probs=72.3
Q ss_pred CcEeechhhHHHHHHHHHHHhccCCeeE--EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYYGLKPV--VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp~--~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G 159 (370)
=||+. ...|++++.||.|.|+.--+|- +.|..|.. ..++.-+.+ |+ ..++||+++...-... +.+
T Consensus 52 i~~i~-~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~-~N~l~gl~~--A~-------~~~~Pvl~i~G~~~~~~~~~~ 120 (564)
T PRK08155 52 IRHIL-ARHEQGAGFIAQGMARTTGKPAVCMACSGPGA-TNLVTAIAD--AR-------LDSIPLVCITGQVPASMIGTD 120 (564)
T ss_pred ceEEE-eccHHHHHHHHHHHHHHcCCCeEEEECCCCcH-HHHHHHHHH--HH-------hcCCCEEEEeccCCcccccCC
Confidence 36777 4599999999999999954553 33545544 445665554 22 3789999885221111 223
Q ss_pred CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017513 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l 209 (370)
..+..+..++++.+-.+. ....+++++..+++.|++ . ++||+|-.|..+
T Consensus 121 ~~q~~d~~~~~~~~tk~~-~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~Dv 174 (564)
T PRK08155 121 AFQEVDTYGISIPITKHN-YLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDV 174 (564)
T ss_pred CccccchhhhhhccceEE-EEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 333222257888776543 334578888888887776 2 599999877553
No 84
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=93.91 E-value=1.2 Score=42.68 Aligned_cols=142 Identities=16% Similarity=0.097 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhH---HHHHHHHHHHhccC-CeeEEEc
Q 017513 39 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITE---AGFTGIGVGAAYYG-LKPVVEF 114 (370)
Q Consensus 39 ~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE---~~~v~~A~GlA~~G-~rp~~~t 114 (370)
.-.++.++|.++....++.+++ .|+|.+. +. | +|++..--- -.++.+|.|++++. -+++++.
T Consensus 12 i~~~~~~a~~~l~~~p~d~iiv-sdiGc~~-----------~~-~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai 77 (287)
T TIGR02177 12 ILSALQRALAELNLDPEQVVVV-SGIGCSA-----------KT-P-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVV 77 (287)
T ss_pred HHHHHHHHHHHhcCCCCCEEEE-ECCCccc-----------cc-C-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEE
Confidence 4567788887776555565544 4766321 11 4 566543221 34667888887774 4677766
Q ss_pred ccchHHH--HHHHHHHHHhhhccccCCCCcccCEEEEe-CC---CCCCC-------CCC-c----c-------hHHHHHH
Q 017513 115 MTFNFSM--QAIDHIINSAAKSNYMSSGQISVPIVFRG-PN---GAAAG-------VGA-Q----H-------SHCYAAW 169 (370)
Q Consensus 115 ~~~~f~~--ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~---G~~~~-------~G~-t----H-------s~~~~a~ 169 (370)
.. +... -....+.+ ++ +.++|++++. .. |..++ .|. + + .....++
T Consensus 78 ~G-DG~f~~mg~~eL~t-A~--------r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~ 147 (287)
T TIGR02177 78 GG-DGDLYGIGGNHFVA-AG--------RRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAI 147 (287)
T ss_pred eC-chHHHhccHHHHHH-HH--------HhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHH
Confidence 44 4442 33344443 33 3578887765 22 22211 110 0 0 0011244
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 170 YASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 170 ~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
.....-.-.....+++|+..+++.|+++++|++|-
T Consensus 148 A~g~g~va~~~~~~~~eL~~ai~~Al~~~GpslIe 182 (287)
T TIGR02177 148 ALGYTFVARGFSGDVAHLKEIIKEAINHKGYALVD 182 (287)
T ss_pred hCCCCeEEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 44443223333699999999999999999999884
No 85
>PRK08611 pyruvate oxidase; Provisional
Probab=93.78 E-value=1.9 Score=45.42 Aligned_cols=115 Identities=14% Similarity=0.087 Sum_probs=72.6
Q ss_pred CcEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G 159 (370)
=||+. ...|++++.+|.|.|+. |...+ +.|..|. +..++.-+.+. + ..++||+++...-... +.+
T Consensus 44 i~~i~-~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG-~~N~l~gla~A--~-------~~~~Pvl~ItG~~~~~~~~~~ 112 (576)
T PRK08611 44 IKFIQ-VRHEEVAALAAAAYAKLTGKIGVCLSIGGPG-AIHLLNGLYDA--K-------MDHVPVLALAGQVTSDLLGTD 112 (576)
T ss_pred CeEEE-eCcHHHHHHHHHHHHHHhCCceEEEECCCCc-HHHHHHHHHHH--h-------hcCCCEEEEecCCcccccCCC
Confidence 36666 55999999999999977 53333 3344544 44455655432 2 3789999986321211 233
Q ss_pred CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccccc
Q 017513 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY 210 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~ 210 (370)
..|..+...+++.+--+ .....+++++...+..|++ .++||+|-.|..+.
T Consensus 113 ~~q~~d~~~l~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~Dv~ 166 (576)
T PRK08611 113 FFQEVNLEKMFEDVAVY-NHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDLP 166 (576)
T ss_pred CccccCHHHHhhcccce-eEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhhh
Confidence 33422235788887554 4456677777777777664 46999998876543
No 86
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=93.73 E-value=1.2 Score=46.68 Aligned_cols=113 Identities=20% Similarity=0.131 Sum_probs=71.7
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCee-EEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYY-GLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp-~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~ 160 (370)
||+.+- .|++++.+|.|.|+. |... ++.|..|. +..++.-+.+.. ..++||+++....... +.+.
T Consensus 50 ~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GPG-~~n~~~gla~A~---------~~~~Pvl~i~G~~~~~~~~~~~ 118 (566)
T PRK07282 50 RHILAR-HEQGALHEAEGYAKSTGKLGVAVVTSGPG-ATNAITGIADAM---------SDSVPLLVFTGQVARAGIGKDA 118 (566)
T ss_pred eEEEec-CHHHHHHHHHHHHHHhCCCeEEEECCCcc-HHHHHHHHHHHh---------hcCCCEEEEecccccccCCCCC
Confidence 777775 999999999999988 6444 34444544 445556554332 3689999986321111 2222
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l 209 (370)
.|..+..++++.+-.+. ....++.++..++..|++. ++||||-.|...
T Consensus 119 ~q~~d~~~~~~~itk~s-~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 171 (566)
T PRK07282 119 FQEADIVGITMPITKYN-YQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV 171 (566)
T ss_pred ccccChhchhcCCCcee-EEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhh
Confidence 23222247888766543 3446778888777777763 589999877653
No 87
>PLN02470 acetolactate synthase
Probab=93.59 E-value=1.5 Score=46.12 Aligned_cols=114 Identities=18% Similarity=0.037 Sum_probs=73.5
Q ss_pred CcEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G 159 (370)
=||+.+ -.|++++.+|-|.|+. |...++ .|..| .+..++.-|.+.. ..++||+++....... +.+
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GP-G~~N~l~gia~A~---------~~~~Pvl~I~G~~~~~~~~~~ 120 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGP-GATNLVTGLADAL---------LDSVPLVAITGQVPRRMIGTD 120 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCc-cHHHHHHHHHHHH---------hcCCcEEEEecCCChhhcCCC
Confidence 467777 6999999999999988 544443 44444 4455666655432 3789999985322222 222
Q ss_pred CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l 209 (370)
..|..+..++++.+-.+ .....+++++..+++.|++. ++||+|-.|...
T Consensus 121 ~~q~~d~~~l~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 174 (585)
T PLN02470 121 AFQETPIVEVTRSITKH-NYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKDI 174 (585)
T ss_pred cCcccchhhhhhhheEE-EEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCch
Confidence 33322224777776543 33456888899888888863 599999877543
No 88
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=93.48 E-value=1.6 Score=41.65 Aligned_cols=145 Identities=17% Similarity=0.116 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccC-CeeEEEcccc
Q 017513 39 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTF 117 (370)
Q Consensus 39 ~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G-~rp~~~t~~~ 117 (370)
.-.++.++|.++....++.+++ .|.|-+. + ...+. .-..+.... -.++.+|.|++++. -+++++...
T Consensus 18 il~al~~al~~l~~~~~~~ivv-sdiGc~~--~--~~~~~----~~~~~~~~~--G~alp~A~GaklA~Pd~~VV~i~G- 85 (279)
T PRK11866 18 ILEALRKALAELGIPPENVVVV-SGIGCSS--N--LPEFL----NTYGIHGIH--GRVLPIATGVKWANPKLTVIGYGG- 85 (279)
T ss_pred HHHHHHHHHHHhcCCCCCEEEE-ECCchhh--h--hhhhc----cCCCccccc--ccHHHHHHHHHHHCCCCcEEEEEC-
Confidence 4577777776665444555544 4665221 1 11121 111222222 45677888888773 466776655
Q ss_pred hH--HHHHHHHHHHHhhhccccCCCCcccCEEEEe-CC---CCCCC-------CCC----c-ch-----HHHHHHHc--c
Q 017513 118 NF--SMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN---GAAAG-------VGA----Q-HS-----HCYAAWYA--S 172 (370)
Q Consensus 118 ~f--~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~---G~~~~-------~G~----t-Hs-----~~~~a~~~--~ 172 (370)
+. .+-.+..+.+ ++ ..++|++++. .. |..++ .|. + +. .++..+.. .
T Consensus 86 DG~~f~ig~~eL~t-A~--------rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G 156 (279)
T PRK11866 86 DGDGYGIGLGHLPH-AA--------RRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAG 156 (279)
T ss_pred ChHHHHccHHHHHH-HH--------HHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCC
Confidence 44 4556666654 33 2577777664 22 22221 010 0 00 02233333 4
Q ss_pred CCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 173 VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 173 iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
.+.+....+.++.|+...++.|++.++|++|-
T Consensus 157 ~~~Va~~~~~~~~~l~~~l~~Al~~~Gps~I~ 188 (279)
T PRK11866 157 ATFVARGFSGDVKHLKEIIKEAIKHKGFSFID 188 (279)
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 55566677799999999999999999999984
No 89
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.45 E-value=1.8 Score=45.48 Aligned_cols=114 Identities=19% Similarity=0.073 Sum_probs=73.2
Q ss_pred CcEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G 159 (370)
=|++.+ -.|++++.||.|.|+. |...++ .+..|.+ ..++.-+.+.. ..++||+++....... +.+
T Consensus 43 i~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~-~n~l~gia~A~---------~~~~Pvl~i~G~~~~~~~~~~ 111 (572)
T PRK08979 43 IEHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGA-TNTITGIATAY---------MDSIPMVVLSGQVPSNLIGND 111 (572)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchH-hHHHHHHHHHh---------hcCCCEEEEecCCCccccCCC
Confidence 367777 4999999999999988 644443 3445544 44555554332 3689999885321111 223
Q ss_pred CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l 209 (370)
..|..+..++++.+-.+ .....+++++...++.|++ .++||||-.|...
T Consensus 112 ~~q~~d~~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (572)
T PRK08979 112 AFQECDMIGISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC 165 (572)
T ss_pred CCcccchhHHhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence 33332335788887554 4445578888888888876 3589999877553
No 90
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=93.42 E-value=0.17 Score=42.92 Aligned_cols=110 Identities=19% Similarity=0.257 Sum_probs=66.2
Q ss_pred Eeechh-hHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEE--eCCCCCCCCCCcc
Q 017513 86 VLDTPI-TEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFR--GPNGAAAGVGAQH 162 (370)
Q Consensus 86 ~~~~GI-aE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~--~~~G~~~~~G~tH 162 (370)
+.+++. .|...+|+|+|+.++|.+|..-+|.+.. ......+. ++-. ..++|+.++ ++ |...++=+.+
T Consensus 43 i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsGl-GNsiNal~-SL~~-------ty~iPl~ml~ShR-G~~~E~i~AQ 112 (172)
T COG4032 43 IPEIPVTREEEGVGICAGAYLAGKKPAILMQNSGL-GNSINALA-SLYV-------TYKIPLLMLASHR-GVLKEGIEAQ 112 (172)
T ss_pred cccccccchhcceeeehhhhhcCCCcEEEEeccCc-chHHHHHH-HHHH-------Hhccchhhhhhcc-chhhcCCccc
Confidence 556554 6889999999999999999999987443 33333221 1111 135555544 44 3322211111
Q ss_pred --hH-HHHHHHccCCCcEEEeeCCHHHHHHHHHHH----HhCCCCEEEEec
Q 017513 163 --SH-CYAAWYASVPGLKVLSPYSSEDARGLLKAA----IRDPDPVVFLEN 206 (370)
Q Consensus 163 --s~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a----~~~~~Pv~i~~~ 206 (370)
-+ ....+++.+ ++.-+.|..|+|+..++..+ ++...||.++.+
T Consensus 113 VpmGr~~~kiLe~~-~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls 162 (172)
T COG4032 113 VPMGRALPKILEGL-ELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLS 162 (172)
T ss_pred cccchhhHHHHhhc-CCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEec
Confidence 00 112455543 45678899999987777654 456899999765
No 91
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.39 E-value=1.7 Score=45.60 Aligned_cols=114 Identities=18% Similarity=0.082 Sum_probs=72.1
Q ss_pred CcEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G 159 (370)
=||+.+ -.|++++.||-|.|+. |...+ +.|..|.+ ..++.-+.+. + ..++||+++....... +.+
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~-~N~l~gl~~A--~-------~~~~Pvl~i~G~~~~~~~~~~ 111 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATGKTGVVLVTSGPGA-TNAITGIATA--Y-------MDSIPMVVLSGQVPSTLIGED 111 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCccH-HHHHHHHHHH--H-------hcCCCEEEEecCCCccccCCC
Confidence 356665 5999999999999987 43333 34444544 4455555432 2 3789999986321211 223
Q ss_pred CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l 209 (370)
..+..+..++++.+-.+ .....++.++..+++.|++. ++|||+-.|...
T Consensus 112 ~~q~~d~~~l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv 165 (574)
T PRK06466 112 AFQETDMVGISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDM 165 (574)
T ss_pred cccccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 33322225788887664 55566788888887777752 599999887653
No 92
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=93.38 E-value=2.7 Score=44.60 Aligned_cols=114 Identities=17% Similarity=0.070 Sum_probs=73.6
Q ss_pred CcEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G 159 (370)
=+++.+ -.|++++.+|.|.|+. |...++ .+..|.+ ..++.-+.+. + ..++||+++....... +.+
T Consensus 70 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~-~N~l~gl~~A--~-------~~~~PllvI~G~~~~~~~~~~ 138 (612)
T PRK07789 70 VRHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGA-TNLVTPIADA--N-------MDSVPVVAITGQVGRGLIGTD 138 (612)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccH-HHHHHHHHHH--h-------hcCCCEEEEecCCCccccCCC
Confidence 366666 5999999999999988 644443 4445544 4455655432 2 3689999986322221 222
Q ss_pred CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l 209 (370)
..|..+..++++.+-.+ .....+++++..+++.|++. ++||+|-.|..+
T Consensus 139 ~~q~~d~~~l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 192 (612)
T PRK07789 139 AFQEADIVGITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDA 192 (612)
T ss_pred cCcccchhhhhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccch
Confidence 33322225788887654 44567888988888888862 589999877654
No 93
>PRK05858 hypothetical protein; Provisional
Probab=93.36 E-value=2.2 Score=44.54 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=72.8
Q ss_pred CcEeechhhHHHHHHHHHHHhccCCeeEE-E-cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYYGLKPVV-E-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp~~-~-t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G 159 (370)
=||+.+- .|++++.||.|.|+...+|-+ . +..|.+ ..++.-|.+. + ..++||+++....... +.|
T Consensus 43 i~~i~~r-hE~~A~~~AdGyar~tg~~gv~~~t~GpG~-~n~~~~i~~A--~-------~~~~Pvl~i~g~~~~~~~~~~ 111 (542)
T PRK05858 43 IRLIDVR-HEQTAAFAAEAWAKLTRVPGVAVLTAGPGV-TNGMSAMAAA--Q-------FNQSPLVVLGGRAPALRWGMG 111 (542)
T ss_pred CCEEeec-cHHHHHHHHHHHHHhcCCCeEEEEcCCchH-HHHHHHHHHH--H-------hcCCCEEEEeCCCCcccCCCC
Confidence 4777775 999999999999999444333 3 334444 4455555432 2 3689999885322222 223
Q ss_pred CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017513 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l 209 (370)
..|..+-.++++.+-.+ .....++.++...+..|++ . ++||+|-.|...
T Consensus 112 ~~q~~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 165 (542)
T PRK05858 112 SLQEIDHVPFVAPVTKF-AATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDH 165 (542)
T ss_pred CCcccchhhhhhhhhce-EEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhh
Confidence 33322224788887654 5556778888888887775 2 589999877653
No 94
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=93.33 E-value=0.72 Score=40.32 Aligned_cols=111 Identities=21% Similarity=0.124 Sum_probs=66.0
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC-
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA- 155 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~- 155 (370)
|.+|+..|. +=-..+++|.|++++. -+++++... +... .....+ ..++ ..++|++++. . .+..
T Consensus 38 p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~G-DG~f~~~~~el-~ta~--------~~~lpv~ivv~NN~~~~~ 107 (172)
T cd02004 38 PRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEG-DGAFGFSGMEL-ETAV--------RYNLPIVVVVGNNGGWYQ 107 (172)
T ss_pred CCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEc-chhhcCCHHHH-HHHH--------HcCCCEEEEEEECccccc
Confidence 889988652 2334667888888875 366766654 4432 223333 3344 4688977765 2 2221
Q ss_pred -CC--C---------CCcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 156 -AG--V---------GAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 156 -~~--~---------G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
.. . +..+.. ++..+.++. |+....-.+.+|+...++.+.+.++|++|-
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 168 (172)
T cd02004 108 GLDGQQLSYGLGLPVTTLLPDTRYDLVAEAF-GGKGELVTTPEELKPALKRALASGKPALIN 168 (172)
T ss_pred chhhhhhhccCCCceeccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHcCCCEEEE
Confidence 10 0 001111 223344443 666777789999999999999888999883
No 95
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=93.23 E-value=2.1 Score=44.98 Aligned_cols=114 Identities=13% Similarity=0.142 Sum_probs=71.9
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~ 160 (370)
||+.+- .|++++.||.|.|+. |.-.++ .|..|.++ .++.-|.+. + ..++||+++...-... +.|.
T Consensus 41 ~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~-N~~~gla~A--~-------~~~~Pvl~I~g~~~~~~~~~~~ 109 (579)
T TIGR03457 41 RFIPVV-HEQGAGHMADGFARVTGRMSMVIGQNGPGVT-NCVTAIAAA--Y-------WAHTPVVIVTPEAGTKTIGLGG 109 (579)
T ss_pred eEEEec-cHHHHHHHHHHHHHHhCCCEEEEECCCchHH-HHHHHHHHH--h-------hcCCCEEEEeCCCccccCCCCC
Confidence 677765 999999999999977 544444 44555444 455555432 2 3689999985321111 2222
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccccc
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY 210 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~ 210 (370)
.+..+..++++.+-.+ .....++.++...++.|++ ..+||||-.|..+.
T Consensus 110 ~Q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~ 162 (579)
T TIGR03457 110 FQEADQLPMFQEFTKY-QGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDYF 162 (579)
T ss_pred CcccchhhhhhcceeE-EEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcchh
Confidence 2222225788876543 4455677887777777765 35899998876543
No 96
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.13 E-value=2.2 Score=44.65 Aligned_cols=113 Identities=19% Similarity=0.087 Sum_probs=73.0
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~ 160 (370)
|++.+- .|++++.||.|.|+. |...+ +.|..|.++ .++.-+.+.. ..++||+++....... +.+.
T Consensus 43 ~~v~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~-n~~~gla~A~---------~~~~Pvl~i~G~~~~~~~~~~~ 111 (563)
T PRK08527 43 KHILTR-HEQAAVHAADGYARASGKVGVAIVTSGPGFT-NAVTGLATAY---------MDSIPLVLISGQVPNSLIGTDA 111 (563)
T ss_pred eEEEec-cHHHHHHHHHHHHhhhCCCEEEEECCCCcHH-HHHHHHHHHh---------hcCCCEEEEecCCCccccCCCC
Confidence 566654 999999999999977 53333 445555544 4556555432 3789999885322211 2222
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l 209 (370)
.|..+..++++.+=.+ .....+++++..+++.|++. ++||||-.|...
T Consensus 112 ~q~~d~~~~~~~~tk~-s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv 164 (563)
T PRK08527 112 FQEIDAVGISRPCVKH-NYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDV 164 (563)
T ss_pred Ccccchhhhhhcccce-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhH
Confidence 3322224788876543 45568899999999988862 489999877543
No 97
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=93.00 E-value=2.1 Score=44.72 Aligned_cols=113 Identities=18% Similarity=0.107 Sum_probs=72.5
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCe-eEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYY-GLK-PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~r-p~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~ 160 (370)
|++.+- .|++++.+|-|.|+. |.- .++.|+.|. +..++.-+.+.. ..++||+++...-... +.+.
T Consensus 41 ~~i~~~-hE~~A~~~Adgyar~tg~~gv~~~t~GpG-~~n~l~~i~~A~---------~~~~Pvl~i~g~~~~~~~~~~~ 109 (558)
T TIGR00118 41 EHILVR-HEQGAAHAADGYARASGKVGVVLVTSGPG-ATNLVTGIATAY---------MDSIPMVVFTGQVPTSLIGSDA 109 (558)
T ss_pred eEEEeC-cHHHHHHHHHHHHHHhCCCEEEEECCCCc-HHHHHHHHHHHH---------hcCCCEEEEecCCCccccCCCC
Confidence 777776 999999999999987 533 334444444 444566555432 3789999986322222 2222
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l 209 (370)
.+..+..++++.+-.+ .....+++++..+++.|++. ++||||-.|..+
T Consensus 110 ~q~~d~~~~~~~~tk~-~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv 162 (558)
T TIGR00118 110 FQEADILGITMPITKH-SFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDV 162 (558)
T ss_pred CcccChhhhhcCccce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhh
Confidence 2222224788876654 34446788888888888762 589999887654
No 98
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=92.98 E-value=0.95 Score=47.49 Aligned_cols=113 Identities=17% Similarity=0.062 Sum_probs=71.8
Q ss_pred cEeechhhHHHHHHHHHHHhccCCeeEEE--cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVE--FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~G~rp~~~--t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~ 160 (370)
|++.+ ..|++++.+|.|.|+.--+|-++ |..|..+ .++.-|.+.. ..++||+++....... +.+.
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~-N~l~gi~~A~---------~~~~Pvl~i~G~~~~~~~~~~~ 113 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARASGVPGVCTATSGPGTT-NLVTGLITAY---------WDSSPVIAITGQVPRSVMGKMA 113 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHH-HHHHHHHHHH---------hhCCCEEEEecCCCccccCCCC
Confidence 46655 48999999999999884344333 5565544 4566655432 3689999985321111 2223
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l 209 (370)
.|..+..++++.+-.+ .....+++++...++.|++ .++||+|-.|...
T Consensus 114 ~q~~d~~~i~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 166 (572)
T PRK06456 114 FQEADAMGVFENVTKY-VIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDI 166 (572)
T ss_pred ccccchhhhhhcccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhH
Confidence 3322225788887655 3444678888888887775 3599999887654
No 99
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=92.82 E-value=2.2 Score=37.68 Aligned_cols=112 Identities=19% Similarity=0.137 Sum_probs=64.9
Q ss_pred CCcEeechh--hHHHHHHHHHHHhcc-CCeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCCC
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYY-GLKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAAA 156 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~~ 156 (370)
|.||+..+- +=-..+..|.|++++ .-++++++.. +... ... |-...+. ..++|++++. . +|..-
T Consensus 38 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~G-DG~f~m~~-~eL~ta~--------~~~l~vi~vV~NN~~~g~ 107 (177)
T cd02010 38 PNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSG-DGGFMMNS-QELETAV--------RLKIPLVVLIWNDNGYGL 107 (177)
T ss_pred CCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEc-chHHHhHH-HHHHHHH--------HHCCCeEEEEEECCcchH
Confidence 788987532 223355677887765 4567766654 4332 222 2222343 3578888775 2 33210
Q ss_pred -C------CCC-cc----hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 157 -G------VGA-QH----SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 157 -~------~G~-tH----s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
. .+. .+ ..++.++-+.. |..-....+++|+...++++++.++|.+|-.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~liev 167 (177)
T cd02010 108 IKWKQEKEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALAADGVHVIDC 167 (177)
T ss_pred HHHHHHHhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence 0 000 01 11223344444 6677788999999999999999999999853
No 100
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=92.77 E-value=3.1 Score=36.96 Aligned_cols=143 Identities=18% Similarity=0.177 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHH-HhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcccch
Q 017513 40 REALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE-KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN 118 (370)
Q Consensus 40 r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~-~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~ 118 (370)
|+++.++|.+.+. +.+++. |.+.+. ..+.. ...|.+|+..|- =-..+..|.|++++--+|+++... +
T Consensus 1 ~~~~~~~l~~~l~--d~iiv~--d~G~~~------~~~~~~~~~~~~~~~~gs-mG~~lpaAiGa~la~~~~Vv~i~G-D 68 (181)
T TIGR03846 1 RIDAIRAIASYLE--DELVVS--NIGVPS------KELYAIRDRPLNFYMLGS-MGLASSIGLGLALATDRTVIVIDG-D 68 (181)
T ss_pred CHHHHHHHHHhCC--CCEEEe--cCCHhH------HHHHhhhcCCCCeeeccc-cccHHHHHHHHHHcCCCcEEEEEc-c
Confidence 4566677777663 444444 444211 12222 123788887542 222356778877764667776654 4
Q ss_pred HHHH-HHHHHHHHhhhccccCCCCcc-cCEEEEe-CCCCCCCCC-----CcchHHHHHHHccCCCcEEEe-eCCHHHHHH
Q 017513 119 FSMQ-AIDHIINSAAKSNYMSSGQIS-VPIVFRG-PNGAAAGVG-----AQHSHCYAAWYASVPGLKVLS-PYSSEDARG 189 (370)
Q Consensus 119 f~~r-a~dqi~~~~a~~~~~~~g~~~-~pvv~~~-~~G~~~~~G-----~tHs~~~~a~~~~iP~~~V~~-P~d~~e~~~ 189 (370)
.... .. |-...++ ..+ +|++++. ..+..+-.+ .++..++.++.++. |+.-.. ..+++|+..
T Consensus 69 G~f~m~~-~el~ta~--------~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~ 138 (181)
T TIGR03846 69 GSLLMNL-GVLPTIA--------AESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAA-GIRNVEKVADEEELRD 138 (181)
T ss_pred hHHHhhh-hHHHHHH--------HhCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHH
Confidence 4332 22 2223333 245 4877765 332211111 11112233444543 444444 789999999
Q ss_pred HHHHHHhCCCCEEEEe
Q 017513 190 LLKAAIRDPDPVVFLE 205 (370)
Q Consensus 190 ~l~~a~~~~~Pv~i~~ 205 (370)
.++ +.+.++|++|-.
T Consensus 139 al~-a~~~~~p~li~v 153 (181)
T TIGR03846 139 ALK-ALAMKGPTFIHV 153 (181)
T ss_pred HHH-HHcCCCCEEEEE
Confidence 997 888889999853
No 101
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=92.77 E-value=1.2 Score=46.69 Aligned_cols=113 Identities=14% Similarity=0.091 Sum_probs=71.4
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeEEE-cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC----CC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA----GV 158 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~-t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~----~~ 158 (370)
|++.+- .|++++.||-|.|+. |...++. |..|.+ ..+..-+.+. + ..++||+++....... +.
T Consensus 42 ~~i~~r-hE~~A~~mAdgyar~tg~~gv~~~t~GPG~-~N~~~gia~A--~-------~~~~Pvl~I~G~~~~~~~~~~~ 110 (554)
T TIGR03254 42 RYIGFR-HEQSAGYAAAAAGFLTQKPGVCLTVSAPGF-LNGLTALANA--T-------TNCFPMIMISGSSERHIVDLQQ 110 (554)
T ss_pred cEEEeC-CHHHHHHHHHHHHHHhCCCEEEEEccCccH-HhHHHHHHHH--H-------hcCCCEEEEEccCCccccccCC
Confidence 677665 999999999999988 5434433 434544 4455555432 2 3689999885221111 11
Q ss_pred CCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513 159 GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (370)
Q Consensus 159 G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l 209 (370)
+..+..+..++++.+-.+ .....++.++..+++.|++ .++||||-.|..+
T Consensus 111 ~~~q~~d~~~~~~~vtk~-~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv 165 (554)
T TIGR03254 111 GDYEEMDQLAAAKPFAKA-AYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAV 165 (554)
T ss_pred CCcchhhHHHHhhhhhee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHH
Confidence 222222335888887654 5566678888777777765 2589999887654
No 102
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=92.66 E-value=1 Score=39.63 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=63.8
Q ss_pred CCCcEe-echhhH-HHHHHHHHHHhccCCeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 82 GPERVL-DTPITE-AGFTGIGVGAAYYGLKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 82 ~p~r~~-~~GIaE-~~~v~~A~GlA~~G~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
.|.||+ +.|..- -..++.|.|++++--||+++... +... .....+ ..+. +.++|++++. ..+..+
T Consensus 40 ~~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~G-DGsf~m~~~eL-~ta~--------~~~l~v~ivVlNN~~~g~ 109 (175)
T cd02009 40 KTVRVFANRGASGIDGTLSTALGIALATDKPTVLLTG-DLSFLHDLNGL-LLGK--------QEPLNLTIVVINNNGGGI 109 (175)
T ss_pred CCceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEe-hHHHHHhHHHH-Hhcc--------ccCCCeEEEEEECCCCch
Confidence 377888 444322 23556777777664577777654 4432 112211 2222 4678887765 222111
Q ss_pred -C---C---C----Cc----chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 157 -G---V---G----AQ----HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 157 -~---~---G----~t----Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
. . + .. |..++.++.+++ |+.-....+++|+...++++++.++|.+|-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 171 (175)
T cd02009 110 FSLLPQASFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALAQDGPHVIE 171 (175)
T ss_pred heeccCCcccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0 0 00 111223444443 556677789999999999999989999883
No 103
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=92.62 E-value=1.5 Score=45.86 Aligned_cols=115 Identities=19% Similarity=0.119 Sum_probs=75.1
Q ss_pred CcEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~ 160 (370)
=||+.+= -||.++.+|.|.|+. |.--+|-..+......++.-|.. |+ +...||+++...-.+. +.+.
T Consensus 40 i~~I~~R-HEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~tgla~--A~-------~d~~Pll~itGqv~~~~~g~~a 109 (550)
T COG0028 40 IRHILVR-HEQGAAFAADGYARATGKPGVCLVTSGPGATNLLTGLAD--AY-------MDSVPLLAITGQVPTSLIGTDA 109 (550)
T ss_pred CcEEEec-cHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHH--HH-------hcCCCEEEEeCCccccccCcch
Confidence 4666664 899999999999998 55444443343444445555432 23 3689999885211222 2233
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l 209 (370)
.|..+..++++.+-.+ .+...+++|+-..++.|++ .++||+|-.|+..
T Consensus 110 fQe~D~~~l~~p~tk~-~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv 162 (550)
T COG0028 110 FQEVDQVGLFRPITKY-NFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDV 162 (550)
T ss_pred hhhcchhhHhhhhhee-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhH
Confidence 3433225788877643 6778888999999999886 2589999887654
No 104
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=92.50 E-value=1.8 Score=38.10 Aligned_cols=111 Identities=17% Similarity=0.218 Sum_probs=64.9
Q ss_pred CCcEeechh-hH-HHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDTPI-TE-AGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~GI-aE-~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.+|+..+. .= -.+++.|.|++++. -++++++.. ..|.+-..+ + ..+. ..++|++++. ..|..+
T Consensus 41 ~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~~~e-l-~t~~--------~~~lp~~~iv~NN~~~~~ 110 (178)
T cd02014 41 KQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAMLMGD-L-ITAV--------KYNLPVIVVVFNNSDLGF 110 (178)
T ss_pred CCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHH-H-HHHH--------HhCCCcEEEEEECCchhH
Confidence 678887543 22 22566777777664 355555543 223333222 2 2343 3678887765 333211
Q ss_pred --------C---CCCc-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 157 --------G---VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 157 --------~---~G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
+ .+.. +..++..+.... |+..+...++.|+...++.+++.++|++|-
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~~l~~a~~~~~p~lie 169 (178)
T cd02014 111 IKWEQEVMGQPEFGVDLPNPDFAKIAEAM-GIKGIRVEDPDELEAALDEALAADGPVVID 169 (178)
T ss_pred HHHHHHHhcCCceeccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1 1111 112333455554 777888899999999999999989999884
No 105
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=92.49 E-value=3.1 Score=43.66 Aligned_cols=113 Identities=12% Similarity=0.043 Sum_probs=69.1
Q ss_pred cEeechhhHHHHHHHHHHHhccCCeeEEEc--ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVEF--MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t--~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~ 160 (370)
|++.+- .|+++..+|-|.|+..-+|-+++ ..|.. ..+..-+.+. + ..++||+++....... +.|.
T Consensus 43 ~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GpG~-~n~~~gi~~A--~-------~~~~Pvl~i~G~~~~~~~~~~~ 111 (574)
T PRK09124 43 EWMHTR-HEEVAAFAAGAEAQLTGELAVCAGSCGPGN-LHLINGLFDC--H-------RNHVPVLAIAAHIPSSEIGSGY 111 (574)
T ss_pred cEEEeC-cHHHHHHHHHHHHHhhCCcEEEEECCCCCH-HHHHHHHHHH--h-------hcCCCEEEEecCCccccCCCCC
Confidence 565554 89999999999999954555443 34433 3445555432 2 3689999885322222 2233
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccc
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELL 209 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l 209 (370)
.+......+++.+-.+ .....+++++...++.|++ .++||+|-.|...
T Consensus 112 ~Q~~d~~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~Dv 163 (574)
T PRK09124 112 FQETHPQELFRECSHY-CELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGDV 163 (574)
T ss_pred ccccChhhhcccceee-eEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhh
Confidence 3322335788876543 3336677776666666554 4689999877654
No 106
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=92.34 E-value=4.4 Score=37.61 Aligned_cols=37 Identities=22% Similarity=0.156 Sum_probs=28.4
Q ss_pred HHHcc--CCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 168 AWYAS--VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 168 a~~~~--iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
.+.++ ++++..+...+++|+..+++.+++.++|++|-
T Consensus 158 ~iA~a~G~~~~~~~~v~~~~el~~al~~a~~~~gP~lIe 196 (235)
T cd03376 158 LIMAAHNIPYVATASVAYPEDLYKKVKKALSIEGPAYIH 196 (235)
T ss_pred HHHHHcCCcEEEEEcCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 34444 33444467899999999999999999999874
No 107
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.25 E-value=1.5 Score=46.31 Aligned_cols=114 Identities=17% Similarity=0.031 Sum_probs=71.5
Q ss_pred CcEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCC--CC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG--VG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~--~G 159 (370)
=|++.+ -.|++++.+|-|.|+. |...+ +.+..|.+ ..++.-+.+. + ..++||+++........ .+
T Consensus 60 i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~-~N~l~gl~~A--~-------~~~~Pvl~i~G~~~~~~~~~~ 128 (587)
T PRK06965 60 IQHVLV-RHEQAAVHAADGYARATGKVGVALVTSGPGV-TNAVTGIATA--Y-------MDSIPMVVISGQVPTAAIGQD 128 (587)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccH-HHHHHHHHHH--h-------hcCCCEEEEecCCCccccCCC
Confidence 467777 5999999999999988 53333 34445444 4455555432 2 37899999863222222 22
Q ss_pred CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017513 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l 209 (370)
..|..+..++++.+-.+ .....+++++..+++.|++ . ++||||-.|...
T Consensus 129 ~~q~~d~~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 182 (587)
T PRK06965 129 AFQECDTVGITRPIVKH-NFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDV 182 (587)
T ss_pred CcccccHHHHhcCCcce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhh
Confidence 22222224788887654 4456677777777777765 3 589999877653
No 108
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=92.16 E-value=0.75 Score=41.49 Aligned_cols=115 Identities=15% Similarity=0.116 Sum_probs=66.8
Q ss_pred CCcEEEEEec-hhHHHHHHHHHHHHhc--CCceeEEEecccc--------C--CCHHHHHHHHhcCCeEEEEecCCCCCC
Q 017513 238 GKDVTITAFS-KIVGLSLKAAEILAKE--GISAEVINLRSIR--------P--LDRSTINASVRKTNRLVTVEEGFPQHG 304 (370)
Q Consensus 238 g~dv~Iia~G-~~~~~al~Aa~~L~~~--Gi~v~Vi~~~~l~--------P--~d~~~i~~~~~~~~~vvvvEe~~~~GG 304 (370)
..||++.+.| ....+++.|++.|++. +++++|||+--|- | ++.+.+.++.-+.+.|++. .-|
T Consensus 34 ePDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVvDLm~L~~~~~hPhglsd~~Fd~lFT~DkPViFa-----fHG 108 (203)
T PF09363_consen 34 EPDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVVDLMKLQPPSEHPHGLSDEEFDALFTKDKPVIFA-----FHG 108 (203)
T ss_dssp T-SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEESBGGGGS-TTT-TTS--HHHHHHHH-SSS-EEEE-----ESS
T ss_pred CCCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEeEccccCCCCCCCCcCCHHHHHHhcCCCCCEEEE-----cCC
Confidence 3689999999 5568899999999999 9999988876552 2 6667888888777777762 245
Q ss_pred hHHHHHHHHHhhccCCCCCCEEEEecCCCCC-CCHHHHHHHhCCCHHHHHHHHHHHH
Q 017513 305 VGAEICASVIEESFGYLDAPVERIAGADVPM-PYAANLERMAVPQVEDIVRAAKRAC 360 (370)
Q Consensus 305 lg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~-~~~~~l~~~~gl~~~~I~~~i~~~l 360 (370)
....|-..+..+.- ..++.--|-.+... ..+-++.-..++|--+++..+.+.+
T Consensus 109 Yp~~i~~L~~~R~n---~~~~hV~GY~EeGttTTPFDM~vlN~~dRfhLa~dai~~~ 162 (203)
T PF09363_consen 109 YPWLIHRLLFGRPN---HDRFHVHGYREEGTTTTPFDMRVLNGMDRFHLAKDAIRRV 162 (203)
T ss_dssp EHHHHHHHTTTSTT---GGGEEEEEE-S---SS-HHHHHHCTT-SHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCC---CCCeEEEeeccCCCcCchHHHHHHhCCCHHHHHHHHHHHh
Confidence 67777777765420 12344344333221 1233444444566666665555544
No 109
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=92.01 E-value=1.6 Score=45.59 Aligned_cols=115 Identities=13% Similarity=0.058 Sum_probs=71.4
Q ss_pred CcEeechhhHHHHHHHHHHHhccCCeeEE--EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYYGLKPVV--EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp~~--~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G 159 (370)
=|++.+ -.|+++..||.|.|+.-.+|-+ .|..|. +..++.-+.+. + ..++||+++...-... +.+
T Consensus 40 i~~v~~-~hE~~A~~mAdgyar~tgkpgv~~~t~GPG-~~N~l~~l~~A--~-------~~~~Pvl~i~G~~~~~~~~~~ 108 (549)
T PRK06457 40 VKYVQV-RHEEGAALAASVEAKITGKPSACMGTSGPG-SIHLLNGLYDA--K-------MDHAPVIALTGQVESDMIGHD 108 (549)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEeCCCCc-hhhhHHHHHHH--H-------hcCCCEEEEecCCCccccCCC
Confidence 345544 5999999999999999544443 344444 44455655432 2 3689999885221221 123
Q ss_pred CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccccc
Q 017513 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY 210 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~ 210 (370)
..+..+...+++.+-.+ .....+++++...++.|++ .++||+|-.|..+.
T Consensus 109 ~~q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv~ 162 (549)
T PRK06457 109 YFQEVNLTKLFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVDIL 162 (549)
T ss_pred cccccchhhhhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhHh
Confidence 33322235788887553 4556677777777777665 46999998886543
No 110
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=91.97 E-value=1.5 Score=45.92 Aligned_cols=114 Identities=18% Similarity=0.073 Sum_probs=71.9
Q ss_pred CcEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G 159 (370)
=+|+.+ -.|++++.+|-|.|+. |...++ .+..|. +..++.-|.+.. ..++||+++....... +.+
T Consensus 46 i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~t~GpG-~~n~~~gl~~A~---------~~~~Pvl~i~G~~~~~~~~~~ 114 (561)
T PRK06048 46 LRHILV-RHEQAAAHAADGYARATGKVGVCVATSGPG-ATNLVTGIATAY---------MDSVPIVALTGQVPRSMIGND 114 (561)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCCc-HHHHHHHHHHHh---------hcCCCEEEEeccCCccccCCC
Confidence 467777 5999999999999988 543333 344444 444566665432 3789999885321211 223
Q ss_pred CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l 209 (370)
..|..+..++++.+-.+ .+.-.++.++..+++.|++ .++||||-.|..+
T Consensus 115 ~~q~~d~~~~~~~itk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~dv 168 (561)
T PRK06048 115 AFQEADITGITMPITKH-NYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDV 168 (561)
T ss_pred CccccchhhhccCcceE-EEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChhh
Confidence 33322224677776543 3335678888888888776 2599999887543
No 111
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.95 E-value=1.7 Score=45.62 Aligned_cols=112 Identities=21% Similarity=0.080 Sum_probs=71.8
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~ 160 (370)
||+.+ -.|++++.||-|.|+. |...++ .|..| .+..++.-+.+.. ..++||+++....... +.+.
T Consensus 44 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~Gp-G~~N~l~~i~~A~---------~~~~Pvlvi~G~~~~~~~~~~~ 112 (574)
T PRK06882 44 EHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGP-GATNAITGIATAY---------TDSVPLVILSGQVPSNLIGTDA 112 (574)
T ss_pred eEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCc-cHHHHHHHHHHHh---------hcCCCEEEEecCCCccccCCCc
Confidence 67777 5999999999999988 533333 34444 4445666655432 3789999885322222 2223
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEeccc
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENEL 208 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~ 208 (370)
.+..+..++++.+-.+ .....+++++..+++.|++ .++||+|-.|..
T Consensus 113 ~q~~d~~~l~~~vtk~-s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 113 FQECDMLGISRPVVKH-SFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred ccccchhhhhhcccce-EEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 2322225788876543 5556788888877877776 259999987754
No 112
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.94 E-value=3 Score=44.11 Aligned_cols=114 Identities=17% Similarity=0.046 Sum_probs=72.4
Q ss_pred CcEeechhhHHHHHHHHHHHhcc-CCeeEEE-cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~-t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G 159 (370)
=||+.+ -.|++++.||-|.|+. |...++. +..|.. ..++.-|.+. + ..++||+++....... +.+
T Consensus 50 i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~-~N~l~gia~A--~-------~~~~Pvl~i~G~~~~~~~~~~ 118 (595)
T PRK09107 50 IQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGA-TNAVTPLQDA--L-------MDSIPLVCITGQVPTHLIGSD 118 (595)
T ss_pred CeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccH-hHHHHHHHHH--h-------hcCCCEEEEEcCCChhhcCCC
Confidence 467777 5999999999999976 6444443 444544 4455555432 2 3789999886322221 223
Q ss_pred CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l 209 (370)
..|..+..++++.+-.+ .+...++.++..+++.|++. ++||||-.|...
T Consensus 119 ~~q~~d~~~l~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 119 AFQECDTVGITRPCTKH-NWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV 172 (595)
T ss_pred CCcccchhhhhhhheEE-EEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCCh
Confidence 33322224777776443 34467888888888888763 589999877654
No 113
>PRK07064 hypothetical protein; Provisional
Probab=91.90 E-value=1.6 Score=45.38 Aligned_cols=113 Identities=16% Similarity=0.108 Sum_probs=71.6
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC-
Q 017513 85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG- 159 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G- 159 (370)
|++.+ ..|+++..+|.|.|+. |...+ +.|..|..+ .++.-+.+.. ..++||+++...-... +.+
T Consensus 43 ~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~-N~~~~i~~A~---------~~~~Pvl~i~g~~~~~~~~~~~ 111 (544)
T PRK07064 43 RFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTGAG-NAAGALVEAL---------TAGTPLLHITGQIETPYLDQDL 111 (544)
T ss_pred cEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHH-HHHHHHHHHH---------hcCCCEEEEeCCCCcccccCCC
Confidence 56655 4999999999999988 54333 345555444 4566665432 2689999885311111 112
Q ss_pred -CcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017513 160 -AQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (370)
Q Consensus 160 -~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l 209 (370)
..|+. +...+++.+-.+ .....+++++..+++.|++ . ++||||-.|...
T Consensus 112 ~~~~~~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (544)
T PRK07064 112 GYIHEAPDQLTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDI 167 (544)
T ss_pred cccccccCHHHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhH
Confidence 23422 335788887654 4555678888777777775 3 699999877653
No 114
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=91.85 E-value=1.3 Score=46.13 Aligned_cols=113 Identities=18% Similarity=0.101 Sum_probs=71.8
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~ 160 (370)
|++.+ ..|++++.+|.|.|+. |...+ +.|..|. +..++.-+.+.. ..++||+++....... +.+.
T Consensus 40 ~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG-~~n~~~~l~~A~---------~~~~Pvl~i~g~~~~~~~~~~~ 108 (548)
T PRK08978 40 EHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPG-ATNLITGLADAL---------LDSVPVVAITGQVSSPLIGTDA 108 (548)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCc-HHHHHHHHHHHh---------hcCCCEEEEecCCCccccCCCC
Confidence 56666 5999999999999999 54333 3344444 444566555432 3789999986322211 2223
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l 209 (370)
.+..+-.++++.+-.+.. ...+++++..+++.|++ .++||+|-.|...
T Consensus 109 ~q~~d~~~~~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (548)
T PRK08978 109 FQEIDVLGLSLACTKHSF-LVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDI 161 (548)
T ss_pred CcccchhccccCceeeEE-EECCHHHHHHHHHHHHHHHhcCCCCcEEEecChhh
Confidence 222222478887765544 34578888888888876 2589999877543
No 115
>PRK08266 hypothetical protein; Provisional
Probab=91.56 E-value=5.1 Score=41.69 Aligned_cols=114 Identities=19% Similarity=0.111 Sum_probs=72.4
Q ss_pred CcEeechhhHHHHHHHHHHHhccCCee-E-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CC-
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYYGLKP-V-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GV- 158 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp-~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~- 158 (370)
=|++.+- .|++++.+|.|.|+.--+| + +.|..|.++ .++.-+.+. + ..++||+++...-... +.
T Consensus 44 i~~v~~~-hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~-N~~~gi~~A--~-------~~~~Pvl~i~g~~~~~~~~~~ 112 (542)
T PRK08266 44 IRVIHTR-HEQAAGYMAFGYARSTGRPGVCSVVPGPGVL-NAGAALLTA--Y-------GCNSPVLCLTGQIPSALIGKG 112 (542)
T ss_pred CeEEeec-cHHHHHHHHHHHHHHhCCCeEEEECCCCcHH-HHHHHHHHH--H-------hhCCCEEEEecCCChhhccCC
Confidence 4666665 9999999999999884443 3 345555444 455655432 2 3789999885321111 12
Q ss_pred -CCcchHHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513 159 -GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (370)
Q Consensus 159 -G~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l 209 (370)
+.+|...+ ..+++.+-.+ .....+++++...++.|++ .++||++-.|...
T Consensus 113 ~~~~~~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~dv 169 (542)
T PRK08266 113 RGHLHEMPDQLATLRSFTKW-AERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDV 169 (542)
T ss_pred CCcceecccHhhHHhhhcce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHhH
Confidence 22343224 5788887654 5556667777777777775 2589999877653
No 116
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=91.21 E-value=2.2 Score=44.91 Aligned_cols=115 Identities=21% Similarity=0.104 Sum_probs=71.3
Q ss_pred CcEeechhhHHHHHHHHHHHhccCCeeEE--EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CCCC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYYGLKPVV--EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp~~--~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~~G 159 (370)
=|++.+= .|++++.||.|.|+.--+|-+ .|..| .+..++.-|.+. + ..++||+++...-.. .+.+
T Consensus 50 i~~v~~r-hE~~A~~~Adgyar~tg~~gv~~~t~Gp-G~~N~~~gl~~A--~-------~~~~Pvl~I~G~~~~~~~~~~ 118 (578)
T PRK06112 50 IRQIAYR-TENAGGAMADGYARVSGKVAVVTAQNGP-AATLLVAPLAEA--L-------KASVPIVALVQDVNRDQTDRN 118 (578)
T ss_pred CcEEEec-cHHHHHHHHHHHHHHhCCCEEEEeCCCC-cHHHHHHHHHHH--h-------hcCCCEEEEecCCccccCCCC
Confidence 4677665 999999999999988434433 34333 444555655442 2 378999988632121 1222
Q ss_pred CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEeccccc
Q 017513 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELLY 210 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l~ 210 (370)
..|..+-..+++.+-.+ .....+++++...++.|++ . ++||+|-.|....
T Consensus 119 ~~Q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~Dv~ 173 (578)
T PRK06112 119 AFQELDHIALFQSCTKW-VRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADLL 173 (578)
T ss_pred CccccChhhhhccccce-EEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHhHh
Confidence 33321225788887654 4456667777777777765 2 5899998876543
No 117
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=91.21 E-value=4.2 Score=36.45 Aligned_cols=26 Identities=12% Similarity=-0.004 Sum_probs=23.5
Q ss_pred EeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 179 LSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 179 ~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
....++.|+...++.+++.++|++|-
T Consensus 155 ~~v~~~~el~~al~~al~~~gp~vIe 180 (193)
T cd03375 155 GFSGDIKQLKEIIKKAIQHKGFSFVE 180 (193)
T ss_pred EecCCHHHHHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999999984
No 118
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=91.17 E-value=2.1 Score=45.06 Aligned_cols=113 Identities=16% Similarity=0.061 Sum_probs=71.2
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~ 160 (370)
||+.+- .|++++.+|-|.|+. |.-.+ +.|..|.++ .++.-|.+.. ..++||+++...-... +.+.
T Consensus 40 ~~i~~~-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~-n~l~~i~~A~---------~~~~Pvl~I~G~~~~~~~~~~~ 108 (586)
T PRK06276 40 IHILTR-HEQAAAHAADGYARASGKVGVCVATSGPGAT-NLVTGIATAY---------ADSSPVIALTGQVPTKLIGNDA 108 (586)
T ss_pred cEEEec-cHHHHHHHHHHHHHHhCCCEEEEECCCccHH-HHHHHHHHHH---------hcCCCEEEEeCCCCccccCCCC
Confidence 677765 999999999999988 53333 334455444 4556555432 3789999885221111 2233
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l 209 (370)
.+..+..++++.+-.+ ...-.+++++...++.|++. ++||||-.|..+
T Consensus 109 ~q~~d~~~l~~~~tk~-s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 161 (586)
T PRK06276 109 FQEIDALGIFMPITKH-NFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDV 161 (586)
T ss_pred CccccHhhHHhhhcce-EEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhH
Confidence 3322224788876554 33446778888888877762 589999887653
No 119
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=91.01 E-value=2.1 Score=44.94 Aligned_cols=115 Identities=12% Similarity=0.037 Sum_probs=72.1
Q ss_pred CcEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC----CC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA----GV 158 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~----~~ 158 (370)
=|++.+- .|++++.||.|.|+. |...++.+.+...+..+..-|.+.. ..++||+++....... +.
T Consensus 48 i~~i~~r-hE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl~~A~---------~~~~Pvl~I~G~~~~~~~~~~~ 117 (569)
T PRK09259 48 IRYIGFR-HEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTALANAT---------TNCFPMIMISGSSEREIVDLQQ 117 (569)
T ss_pred CCEEeeC-CHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHH---------hcCCCEEEEEccCCcccccccC
Confidence 4677765 999999999999998 5444443333334445566655432 3789999885321111 11
Q ss_pred CCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513 159 GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (370)
Q Consensus 159 G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l 209 (370)
+..+..+..++++.+-.+ .+...++.++...++.|++ .++||||-.|..+
T Consensus 118 ~~~q~~d~~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 172 (569)
T PRK09259 118 GDYEELDQLNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKV 172 (569)
T ss_pred CCccccchhhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHH
Confidence 222212224788887654 4555678888888887775 2589999887654
No 120
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=91.01 E-value=5.8 Score=36.82 Aligned_cols=37 Identities=22% Similarity=0.156 Sum_probs=28.5
Q ss_pred HHHcc--CCCcEEEeeCCHHHHHHHHHHHHh-CCCCEEEE
Q 017513 168 AWYAS--VPGLKVLSPYSSEDARGLLKAAIR-DPDPVVFL 204 (370)
Q Consensus 168 a~~~~--iP~~~V~~P~d~~e~~~~l~~a~~-~~~Pv~i~ 204 (370)
.+.++ ++.+....+.++.|+..+++.+++ .++|++|-
T Consensus 160 ~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI~ 199 (237)
T cd02018 160 LIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFIH 199 (237)
T ss_pred HHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 44444 444444469999999999999998 89999984
No 121
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=90.78 E-value=1.7 Score=41.92 Aligned_cols=34 Identities=24% Similarity=-0.002 Sum_probs=30.6
Q ss_pred ccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 171 ASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 171 ~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
..++-+....|+++.++...++.|++.++|.+|-
T Consensus 170 ~g~~yVA~~~~~~~~~~~~~i~~A~~~~Gps~I~ 203 (300)
T PRK11864 170 HKVPYVATASIAYPEDFIRKLKKAKEIRGFKFIH 203 (300)
T ss_pred cCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 3577788899999999999999999999999985
No 122
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=90.77 E-value=7.2 Score=40.98 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=71.5
Q ss_pred cEeechhhHHHHHHHHHHHhccCCe-eE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCC---
Q 017513 85 RVLDTPITEAGFTGIGVGAAYYGLK-PV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVG--- 159 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~G~r-p~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G--- 159 (370)
||+.+= .|++++.+|-|.|+...+ .+ +.|..| .+..++.-|.+. + ..++||+++...-.....+
T Consensus 52 ~~V~~r-hE~~A~~~Adgyar~tgk~gv~~~t~GP-G~~N~~~gla~A--~-------~d~~Pvl~I~G~~~~~~~~~~~ 120 (569)
T PRK08327 52 EFVICP-HEIVAISMAHGYALVTGKPQAVMVHVDV-GTANALGGVHNA--A-------RSRIPVLVFAGRSPYTEEGELG 120 (569)
T ss_pred cEEecC-CHHHHHHHHHHHHHhhCCCeEEEEecCH-HHHHHHHHHHHH--h-------hcCCCEEEEeccCCcccccccc
Confidence 777776 799999999999999443 33 334444 444455555432 2 3789999885321111111
Q ss_pred ----Ccc-hHH--H-HHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513 160 ----AQH-SHC--Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (370)
Q Consensus 160 ----~tH-s~~--~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l 209 (370)
..| .|+ | .++++.+-.+ .....+++++...++.|++ .++||+|..|..+
T Consensus 121 ~~~~~~~~~qe~~d~~~~~~~vtk~-~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~Dv 182 (569)
T PRK08327 121 SRNTRIHWTQEMRDQGGLVREYVKW-DYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREV 182 (569)
T ss_pred ccccCcccchhhhhHHHHHhhhhhh-hcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHHH
Confidence 111 232 4 4788876543 5567788888888888776 2689999887554
No 123
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=90.43 E-value=6.8 Score=41.28 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=71.9
Q ss_pred cEeechhhHHHHHHHHHHHhccCCeeEEE--cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYYGLKPVVE--FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~G~rp~~~--t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~ 160 (370)
||+.+- .|++++.||-|.|+...+|-++ +..|. +..++.-+.+. + ..++||+++....... +.|.
T Consensus 43 ~~i~~r-hE~~A~~mAdgyar~tgk~~v~~v~~GpG-~~N~~~gl~~A--~-------~~~~Pvl~I~G~~~~~~~~~~~ 111 (578)
T PRK06546 43 EWVHVR-HEEAAAFAAAAEAQLTGKLAVCAGSCGPG-NLHLINGLYDA--H-------RSGAPVLAIASHIPSAQIGSGF 111 (578)
T ss_pred eEEEeC-cHHHHHHHHHhHHHhhCCceEEEECCCCc-HHHHHHHHHHH--H-------hcCCCEEEEeCCCCccccCCCC
Confidence 477765 8999999999999995445444 23443 44455555432 2 3689999885322222 2233
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccc
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELL 209 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l 209 (370)
.|..+...+++.+-.+ .....+++++...++.|++ .++||+|-.|...
T Consensus 112 ~Qe~d~~~l~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~Dv 163 (578)
T PRK06546 112 FQETHPDRLFVECSGY-CEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGDI 163 (578)
T ss_pred ccccChhhhcccceee-EeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhh
Confidence 3322225778876443 5666778888877777765 4689999877654
No 124
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=90.36 E-value=2.2 Score=38.25 Aligned_cols=111 Identities=18% Similarity=0.141 Sum_probs=64.3
Q ss_pred CCcEeechh-hH-HHHHHHHHHHhcc-CCeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC-
Q 017513 83 PERVLDTPI-TE-AGFTGIGVGAAYY-GLKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA- 155 (370)
Q Consensus 83 p~r~~~~GI-aE-~~~v~~A~GlA~~-G~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~- 155 (370)
|.+|+..+- .= -..+..|.|++++ .-++++++.. ..|.+. ...+ ..++ ..++|++++. . +|..
T Consensus 43 ~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG~f~m~-~~eL-~Ta~--------~~~lpvi~vV~NN~~yg~ 112 (196)
T cd02013 43 PRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDGAWGMS-MMEI-MTAV--------RHKLPVTAVVFRNRQWGA 112 (196)
T ss_pred CCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhcc-HHHH-HHHH--------HhCCCeEEEEEECchhHH
Confidence 788886531 11 3356688888776 3466666654 223332 2223 2343 3678988876 3 2321
Q ss_pred -C-----CCC-----Cc-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh---CCCCEEEE
Q 017513 156 -A-----GVG-----AQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR---DPDPVVFL 204 (370)
Q Consensus 156 -~-----~~G-----~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~---~~~Pv~i~ 204 (370)
. ..+ .. +..++..+-+++ |+.-..-.++.|+...++++++ .++|++|-
T Consensus 113 ~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lie 175 (196)
T cd02013 113 EKKNQVDFYNNRFVGTELESESFAKIAEAC-GAKGITVDKPEDVGPALQKAIAMMAEGKTTVIE 175 (196)
T ss_pred HHHHHHHHcCCCcccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 0 001 11 111223344443 5667788899999999999998 78999984
No 125
>PRK11269 glyoxylate carboligase; Provisional
Probab=90.27 E-value=8.4 Score=40.66 Aligned_cols=114 Identities=11% Similarity=-0.011 Sum_probs=72.5
Q ss_pred CcEeechhhHHHHHHHHHHHhccC-CeeE--EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYYG-LKPV--VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GV 158 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~G-~rp~--~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~ 158 (370)
=||+.+ ..|++++.||-|.|+.- .+|- +.|..|..+ .++.-+.+. + ..++||+++...-... +.
T Consensus 43 i~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~-N~l~gl~~A--~-------~~~~Pvl~I~G~~~~~~~~~ 111 (591)
T PRK11269 43 IRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGT-DMITGLYSA--S-------ADSIPILCITGQAPRARLHK 111 (591)
T ss_pred CcEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHH-HHHHHHHHH--h-------hcCCCEEEEecCCCccccCC
Confidence 378877 59999999999999875 4343 446565444 345555432 2 3689999885321221 22
Q ss_pred CCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-----CCCEEEEecccc
Q 017513 159 GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-----PDPVVFLENELL 209 (370)
Q Consensus 159 G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-----~~Pv~i~~~~~l 209 (370)
+..+..+..++++.+-.+ .....+++++..+++.|++. ++||+|-.|..+
T Consensus 112 ~~~q~~d~~~l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv 166 (591)
T PRK11269 112 EDFQAVDIESIAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDV 166 (591)
T ss_pred CcccccChhhHhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChhh
Confidence 222222225788876544 44457788888888888762 589999877553
No 126
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=90.22 E-value=3 Score=44.00 Aligned_cols=113 Identities=15% Similarity=0.049 Sum_probs=70.4
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCC--CCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG--VGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~--~G~ 160 (370)
||+.+- .|++++.+|.|.|+. |...++ .+..|..+ .++.-|.+. + ..++||+++........ .+.
T Consensus 53 ~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~-N~l~gl~~A--~-------~~~~Pvl~I~G~~~~~~~~~~~ 121 (585)
T CHL00099 53 KHILVR-HEQGAAHAADGYARSTGKVGVCFATSGPGAT-NLVTGIATA--Q-------MDSVPLLVITGQVGRAFIGTDA 121 (585)
T ss_pred eEEEec-CHHHHHHHHHHHHHhcCCcEEEEECCCCcHH-HHHHHHHHH--h-------hcCCCEEEEecCCCccccCCCC
Confidence 567754 999999999999988 543333 44455444 455555432 2 37899999863222221 223
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEecccc
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELL 209 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l 209 (370)
.|..+..++++.+-.+ .....+++++..+++.|++ .++||||..|..+
T Consensus 122 ~q~~d~~~~~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv 174 (585)
T CHL00099 122 FQEVDIFGITLPIVKH-SYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDV 174 (585)
T ss_pred ccccchhhhhcCceeE-EEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhh
Confidence 3322224677765433 4455688888888888875 2589999887653
No 127
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=90.11 E-value=4.9 Score=38.31 Aligned_cols=142 Identities=13% Similarity=0.014 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEe-echhhHHHHHHHHHHHhcc-CCeeEEEcccch
Q 017513 41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVL-DTPITEAGFTGIGVGAAYY-GLKPVVEFMTFN 118 (370)
Q Consensus 41 ~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~-~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~ 118 (370)
..+.++|.++....++.+++ .|+|-+ ..+..-+.++++. -.| ..+.+|.|++++ .-+++++... +
T Consensus 29 ~~v~~al~e~~~~~~d~ivv-sdiGc~-------~~~~~~~~~~~~~~~~G----~alPaAiGaklA~Pdr~VV~i~G-D 95 (277)
T PRK09628 29 KSIIRAIDKLGWNMDDVCVV-SGIGCS-------GRFSSYVNCNTVHTTHG----RAVAYATGIKLANPDKHVIVVSG-D 95 (277)
T ss_pred HHHHHHHHHhcCCCCCEEEE-eCcCHH-------HHhhccCCCCceeeccc----cHHHHHHHHHHHCCCCeEEEEEC-c
Confidence 44557777665344565544 466621 1111122245554 344 677888888886 3466666644 5
Q ss_pred HHHHH-HHHHHHHhhhccccCCCCcccCEEEEe-CC---CCCCC-------CCC-c----c-h--H--HHHHHHccCCCc
Q 017513 119 FSMQA-IDHIINSAAKSNYMSSGQISVPIVFRG-PN---GAAAG-------VGA-Q----H-S--H--CYAAWYASVPGL 176 (370)
Q Consensus 119 f~~ra-~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~---G~~~~-------~G~-t----H-s--~--~~~a~~~~iP~~ 176 (370)
..... -.+-...++ +.++|++++. .. |..++ .|. + + . . ++.++-.+. |+
T Consensus 96 G~f~~~g~~el~ta~--------r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~-G~ 166 (277)
T PRK09628 96 GDGLAIGGNHTIHGC--------RRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAA-GA 166 (277)
T ss_pred hHHHHhhHHHHHHHH--------HhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHC-CC
Confidence 43211 122222244 3678887775 22 22111 010 0 0 0 0 112333332 44
Q ss_pred EE---EeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 177 KV---LSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 177 ~V---~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
.- ....+++|+..+++.|++.++|++|-
T Consensus 167 ~~va~~~v~~~~el~~al~~Al~~~Gp~lIe 197 (277)
T PRK09628 167 SFVARESVIDPQKLEKLLVKGFSHKGFSFFD 197 (277)
T ss_pred ceEEEEccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 32 57899999999999999999999984
No 128
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=90.11 E-value=3.5 Score=43.55 Aligned_cols=114 Identities=15% Similarity=0.038 Sum_probs=71.7
Q ss_pred cEeechhhHHHHHHHHHHHhccC-CeeEE--EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYYG-LKPVV--EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~G-~rp~~--~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G 159 (370)
|++.+- .|++++.||-|.|+.. .+|-+ .|..|.++ .++.-+.+. + ..++||+++...-.+. +.+
T Consensus 43 ~~V~~r-hE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~-N~~~gla~A--~-------~~~~Pvl~I~G~~~~~~~~~~ 111 (588)
T TIGR01504 43 RHILAR-HVEGASHMAEGYTRATAGNIGVCIGTSGPAGT-DMITGLYSA--S-------ADSIPILCITGQAPRARLHKE 111 (588)
T ss_pred cEEeeC-CHHHHHHHHHHHHHhcCCCeEEEEECCCccHH-HHHHHHHHH--h-------hcCCCEEEEecCCCccccCCC
Confidence 666654 8999999999999873 44433 34455443 455555432 2 3689999985221211 222
Q ss_pred CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEeccccc
Q 017513 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENELLY 210 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~l~ 210 (370)
..+..+..++++.+-.+ .....+++++...++.|++ .++||+|-.|....
T Consensus 112 ~~q~~D~~~~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~ 166 (588)
T TIGR01504 112 DFQAVDIAAIAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQ 166 (588)
T ss_pred cccccCHHHHhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcchh
Confidence 32322225788887654 3445678888888888886 25899998876543
No 129
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=90.04 E-value=2.9 Score=43.96 Aligned_cols=113 Identities=13% Similarity=0.048 Sum_probs=68.6
Q ss_pred CcEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCC--CC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG--VG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~--~G 159 (370)
=||+.+- .|++++.+|-|.|+. |.-.++ .+..| .+..++.-+.+. + ..++||+++........ .+
T Consensus 39 i~~v~~r-hE~~A~~~Adgyar~tgk~gv~~~t~GP-G~~n~~~~i~~A--~-------~~~~Pvl~I~G~~~~~~~~~~ 107 (575)
T TIGR02720 39 IHYIQVR-HEEVGALAAAADAKLTGKIGVCFGSAGP-GATHLLNGLYDA--K-------EDHVPVLALVGQVPTTGMNMD 107 (575)
T ss_pred CcEEEec-cHHHHHHHHHHHHHhhCCceEEEeCCCC-cHHHHHHHHHHH--h-------hcCCCEEEEecCCccccCCCC
Confidence 3566665 899999999999987 433333 34444 444566665543 2 36899999863222222 22
Q ss_pred CcchHHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHH----hCCCCEEEEecccc
Q 017513 160 AQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAI----RDPDPVVFLENELL 209 (370)
Q Consensus 160 ~tHs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~----~~~~Pv~i~~~~~l 209 (370)
..| ..| .++++.+-.+ .....+++++...++.|+ ..++||||-.|..+
T Consensus 108 ~~q-~id~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 160 (575)
T TIGR02720 108 TFQ-EMNENPIYADVAVY-NRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDF 160 (575)
T ss_pred Ccc-eechhhhhhhcceE-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcch
Confidence 223 223 5788876433 234455666666655555 45799999887654
No 130
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=89.96 E-value=3.5 Score=37.23 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=29.2
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 168 AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 168 a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
++.+.+ |+.-....+++|+...++.+++.++|++|-
T Consensus 145 ~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 180 (205)
T cd02003 145 ANARSL-GARVEKVKTIEELKAALAKAKASDRTTVIV 180 (205)
T ss_pred HHHHhC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 444444 667777799999999999999989999884
No 131
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=89.41 E-value=10 Score=36.53 Aligned_cols=34 Identities=21% Similarity=0.100 Sum_probs=30.6
Q ss_pred ccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 171 ASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 171 ~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
...+-+....|+++.|+...++.|.+.++|.+|.
T Consensus 174 ~g~~YVA~~~~~~~~~l~~~i~~A~~~~Gps~I~ 207 (299)
T PRK11865 174 HGIPYVATASIGYPEDFMEKVKKAKEVEGPAYIQ 207 (299)
T ss_pred cCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 5577788889999999999999999999999985
No 132
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=89.40 E-value=9.3 Score=39.86 Aligned_cols=114 Identities=16% Similarity=0.065 Sum_probs=66.3
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC-
Q 017513 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA- 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~- 160 (370)
|++.+ -.|+++.-+|-|.|+. |...++.+.+......+..-|.. |+ ..++||+++...-... +.+.
T Consensus 40 ~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gia~--A~-------~~~~Pvl~i~g~~~~~~~~~~~~ 109 (535)
T TIGR03394 40 PLHTL-SHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVNAIAG--AY-------AEKSPVVVISGAPGTTEGNAGLL 109 (535)
T ss_pred eEEcc-cCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhhHHHH--Hh-------hcCCCEEEEECCCCcccccCCce
Confidence 67764 5999999999999998 54444433333344455565543 22 3689999985321111 2222
Q ss_pred -cchH--H-H-HHHHccCCCcEEEeeCCHHHHHH----HHHHHHhCCCCEEEEecccc
Q 017513 161 -QHSH--C-Y-AAWYASVPGLKVLSPYSSEDARG----LLKAAIRDPDPVVFLENELL 209 (370)
Q Consensus 161 -tHs~--~-~-~a~~~~iP~~~V~~P~d~~e~~~----~l~~a~~~~~Pv~i~~~~~l 209 (370)
+|+. . + ..+++.+-.+. ....++.++.. +++.|+..++||+|-.|..+
T Consensus 110 ~~~~~~~~~~~~~~~~~vtk~~-~~v~~~~~~~~~~~~A~~~a~~~~gPv~i~iP~Dv 166 (535)
T TIGR03394 110 LHHQGRTLDSQFQVFKEVTCDQ-AVLDDPATAPAEIARVLGSARELSRPVYLEIPRDM 166 (535)
T ss_pred eEeeccchHHHHHhhhhheEEE-EEeCChHHhHHHHHHHHHHHHHCCCCEEEEechhh
Confidence 2422 1 2 36777654332 22344544444 44555556799999887654
No 133
>PRK06163 hypothetical protein; Provisional
Probab=89.12 E-value=16 Score=33.08 Aligned_cols=113 Identities=14% Similarity=0.069 Sum_probs=63.5
Q ss_pred CCcEeechhhHHHHHHHHHHHhccC-CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CC-CCC--CC
Q 017513 83 PERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN-GAA--AG 157 (370)
Q Consensus 83 p~r~~~~GIaE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~-G~~--~~ 157 (370)
|.+|+..| +=-..+.+|.|++++. -+++++... +...-.--|-...++. ..++|++++. .. +.. +.
T Consensus 50 ~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i~G-DG~f~m~~~eL~Ta~~-------~~~lpi~ivV~NN~~yg~~~~ 120 (202)
T PRK06163 50 PQNFYMLG-SMGLAFPIALGVALAQPKRRVIALEG-DGSLLMQLGALGTIAA-------LAPKNLTIIVMDNGVYQITGG 120 (202)
T ss_pred CCCeEeec-ccccHHHHHHHHHHhCCCCeEEEEEc-chHHHHHHHHHHHHHH-------hcCCCeEEEEEcCCchhhcCC
Confidence 77888644 2334455778887763 466676655 4432111122223331 1256776665 32 221 11
Q ss_pred C--CCcchHHHHHHHccCCCcE-EEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 158 V--GAQHSHCYAAWYASVPGLK-VLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 158 ~--G~tHs~~~~a~~~~iP~~~-V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
. ...+..++.++.+++ |+. -+...+.+|+...++.+++.++|++|-.
T Consensus 121 ~~~~~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~al~~a~~~~~p~lIeV 170 (202)
T PRK06163 121 QPTLTSQTVDVVAIARGA-GLENSHWAADEAHFEALVDQALSGPGPSFIAV 170 (202)
T ss_pred ccCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 1 111222334455554 554 4567899999999999999899998753
No 134
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=88.68 E-value=8 Score=40.88 Aligned_cols=115 Identities=18% Similarity=0.134 Sum_probs=69.6
Q ss_pred CcEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G 159 (370)
=||+.+- .|++++.+|-|.|+. |...++ .|..| .+..++.-|.+ |+ ..++||+++...-... +.+
T Consensus 43 i~~i~~r-hE~~A~~~Adgyar~tg~~gv~~~t~GP-G~~n~~~gi~~--A~-------~d~vPvl~I~G~~~~~~~~~~ 111 (597)
T PRK08273 43 PEFVQAR-HEEMAAFMAVAHAKFTGEVGVCLATSGP-GAIHLLNGLYD--AK-------LDHVPVVAIVGQQARAALGGH 111 (597)
T ss_pred CeEEEec-cHHHHHHHHHHHHHHhCCCEEEEECCCc-cHHHHHHHHHH--HH-------hcCCCEEEEecCCchhhcCCC
Confidence 4567665 999999999999988 544444 34444 44455565543 22 3689999885211111 112
Q ss_pred CcchHHHHHHHccCC-CcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccccc
Q 017513 160 AQHSHCYAAWYASVP-GLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELLY 210 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP-~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l~ 210 (370)
..+..+..++++.+- -+ .....+++++...++.|++ ..+||+|..|..+.
T Consensus 112 ~~q~~d~~~l~~~vt~k~-~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv~ 166 (597)
T PRK08273 112 YQQEVDLQSLFKDVAGAF-VQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDVQ 166 (597)
T ss_pred CCCccCHHHHHHHHHHHH-eeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcchh
Confidence 222222246777754 22 4456667777776666654 46899998876543
No 135
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=88.62 E-value=2.4 Score=36.37 Aligned_cols=111 Identities=19% Similarity=0.197 Sum_probs=61.9
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCCC
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG 157 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~~ 157 (370)
|.+++..+. +=-..++.|.|++++. -++++.... +... ..++.+. .+. ..++|++++. ..+..+-
T Consensus 36 ~~~~~~~~~~g~~G~~~~~a~Gaa~a~~~~~vv~~~G-DG~~~~~~~~l~-ta~--------~~~~~~~~iv~nN~~~~~ 105 (168)
T cd00568 36 GRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAG-DGGFMMTGQELA-TAV--------RYGLPVIVVVFNNGGYGT 105 (168)
T ss_pred CCcEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEc-CcHHhccHHHHH-HHH--------HcCCCcEEEEEECCccHH
Confidence 445554322 2234556777777764 244554444 3332 2344332 233 2577877765 2332110
Q ss_pred CC-------------Cc-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 158 VG-------------AQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 158 ~G-------------~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
.+ .. +..++.++.+.. |+......++.|+...++++.+.++|++|-
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~a~~~a~~~~~p~~i~ 165 (168)
T cd00568 106 IRMHQEAFYGGRVSGTDLSNPDFAALAEAY-GAKGVRVEDPEDLEAALAEALAAGGPALIE 165 (168)
T ss_pred HHHHHHHHcCCCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 11 111233555553 677788889999999999999889999884
No 136
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=88.37 E-value=5.8 Score=35.07 Aligned_cols=111 Identities=23% Similarity=0.218 Sum_probs=64.2
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.+|+..+- +=-..+..|.|++++. -+++++... ..|.+.. ..+ ..++ ..++|++++. ..+..+
T Consensus 40 ~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~~~~-~eL-~ta~--------~~~lpi~ivV~nN~~~~~ 109 (186)
T cd02015 40 PRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSFQMNI-QEL-ATAA--------QYNLPVKIVILNNGSLGM 109 (186)
T ss_pred CCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHHhccH-HHH-HHHH--------HhCCCeEEEEEECCccHH
Confidence 788887542 1123567888888764 356665544 2233322 222 2344 3678887775 333211
Q ss_pred ----------C-C-CCcc--hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 157 ----------G-V-GAQH--SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 157 ----------~-~-G~tH--s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
+ . +..+ ..++..+.+++ |+.-....+..|+...++.+++.++|++|-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 170 (186)
T cd02015 110 VRQWQELFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALASDGPVLLD 170 (186)
T ss_pred HHHHHHHHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0 1111 11223444544 566667788999999999999989999984
No 137
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=87.87 E-value=3.7 Score=34.95 Aligned_cols=110 Identities=22% Similarity=0.282 Sum_probs=64.0
Q ss_pred CCcEeec--hhhHHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC-
Q 017513 83 PERVLDT--PITEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA- 155 (370)
Q Consensus 83 p~r~~~~--GIaE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~- 155 (370)
|.||++. .-+=-..+++|.|++++. -++++.... +... .....+. .+. ..++|++++. . .+..
T Consensus 18 p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~G-DG~f~~~~~el~-ta~--------~~~~~v~~vv~nN~~~~~ 87 (153)
T PF02775_consen 18 PRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITG-DGSFLMSLQELA-TAV--------RYGLPVVIVVLNNGGYGM 87 (153)
T ss_dssp TTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEE-HHHHHHHGGGHH-HHH--------HTTSSEEEEEEESSBSHH
T ss_pred CCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecC-CcceeeccchhH-HHh--------hccceEEEEEEeCCcceE
Confidence 7888872 224445677788888873 456666544 4432 1122232 333 3577887775 2 2211
Q ss_pred -C----CCCC----------cchHHHHHHHccCCCcEEEeeCCH--HHHHHHHHHHHhCCCCEEE
Q 017513 156 -A----GVGA----------QHSHCYAAWYASVPGLKVLSPYSS--EDARGLLKAAIRDPDPVVF 203 (370)
Q Consensus 156 -~----~~G~----------tHs~~~~a~~~~iP~~~V~~P~d~--~e~~~~l~~a~~~~~Pv~i 203 (370)
. ..+. .|..++..+.+.. |+..+.-.++ +|+...++++++.++|++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~~~gp~vI 151 (153)
T PF02775_consen 88 TGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALESGGPAVI 151 (153)
T ss_dssp HHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHHSSSEEEE
T ss_pred eccccccCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHhCCCcEEE
Confidence 0 0111 2223344555554 5666665555 9999999999999999987
No 138
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=87.61 E-value=12 Score=35.91 Aligned_cols=143 Identities=19% Similarity=0.113 Sum_probs=78.3
Q ss_pred cHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeech-h--hHHHHHHHHHHHhccC-CeeEEE
Q 017513 38 MVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTP-I--TEAGFTGIGVGAAYYG-LKPVVE 113 (370)
Q Consensus 38 ~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~G-I--aE~~~v~~A~GlA~~G-~rp~~~ 113 (370)
..-.++.++|.++....++.+++ .|+|.+. .+ + +|++.+ . .=-.++.+|.|++++. -+++++
T Consensus 27 ~il~~l~~al~~l~~~p~d~vvv-sdiGc~~-----------~~-~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~ 92 (286)
T PRK11867 27 SILAALQRALAELGLDPENVAVV-SGIGCSG-----------RL-P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIV 92 (286)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEE-eCCcccc-----------cc-C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEE
Confidence 35677778887665555565555 4666221 01 1 344432 1 1234566778877763 466666
Q ss_pred cccchH--HHHHHHHHHHHhhhccccCCCCcccCEEEEe-CC---CCCCC-------CCC----c-c-h----HHHHHHH
Q 017513 114 FMTFNF--SMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN---GAAAG-------VGA----Q-H-S----HCYAAWY 170 (370)
Q Consensus 114 t~~~~f--~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~---G~~~~-------~G~----t-H-s----~~~~a~~ 170 (370)
+.. +. .+-....+.+ ++ +.++|++++. .. |..++ .|. + + . .+..++.
T Consensus 93 i~G-DG~~f~mg~~eL~t-A~--------r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA 162 (286)
T PRK11867 93 VTG-DGDALAIGGNHFIH-AL--------RRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELA 162 (286)
T ss_pred EeC-ccHHHhCCHHHHHH-HH--------HhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHH
Confidence 654 44 3344444543 33 3678877765 22 21111 010 1 0 0 1123344
Q ss_pred ccC--CCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 171 ASV--PGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 171 ~~i--P~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
.+. ..+......+++|+..+++.|++.++|++|-
T Consensus 163 ~a~Ga~~va~~~~~~~~el~~al~~Al~~~Gp~lIe 198 (286)
T PRK11867 163 LGAGATFVARGFDSDVKQLTELIKAAINHKGFSFVE 198 (286)
T ss_pred HHCCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 443 2233335789999999999999999999984
No 139
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=87.47 E-value=12 Score=39.02 Aligned_cols=114 Identities=15% Similarity=0.134 Sum_probs=69.9
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeEEE-cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CC--
Q 017513 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVE-FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GV-- 158 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~-t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~-- 158 (370)
||+.+ -.|++++.||-|.|+. | +.++. +..|.. ..++.-+.+ |+ ..++||+++...-... +.
T Consensus 41 ~~v~~-rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~-~n~~~gla~--A~-------~d~~Pvl~I~G~~~~~~~~~~~ 108 (539)
T TIGR03393 41 CWVGC-ANELNAAYAADGYARCKG-AAALLTTFGVGE-LSAINGIAG--SY-------AEHLPVIHIVGAPGTAAQQRGE 108 (539)
T ss_pred cEecc-CCcccHHHHhhhhhhhcC-ceEEEEecCccH-HHHhhHHHH--Hh-------hccCCEEEEECCCCcchhhcCc
Confidence 55655 4999999999999998 6 56654 545544 445555543 22 3689999885211110 00
Q ss_pred ------CC-cchHHHHHHHccCCCcE-EEeeCC-HHHHHHHHHHHHhCCCCEEEEecccccC
Q 017513 159 ------GA-QHSHCYAAWYASVPGLK-VLSPYS-SEDARGLLKAAIRDPDPVVFLENELLYG 211 (370)
Q Consensus 159 ------G~-tHs~~~~a~~~~iP~~~-V~~P~d-~~e~~~~l~~a~~~~~Pv~i~~~~~l~~ 211 (370)
+. .+ |....+++.+--+. +..|.+ +.++.++++.|+..++||+|-.|..+..
T Consensus 109 ~~~~~~~~~~~-q~~~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~~~gPv~l~iP~Dv~~ 169 (539)
T TIGR03393 109 LLHHTLGDGDF-RHFYRMAAEVTVAQAVLTEQNATAEIDRVITTALRERRPGYLMLPVDVAA 169 (539)
T ss_pred eeeeecCCCch-HHHHHHhhceEEEEEEeChhhhHHHHHHHHHHHHhcCCCEEEEecccccC
Confidence 10 12 22235555543221 224566 6888888888988889999988876543
No 140
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=87.12 E-value=6.4 Score=41.15 Aligned_cols=147 Identities=18% Similarity=0.333 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechh--hHHHHHHHHHHHhccCCeeEEEccc-chH
Q 017513 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYYGLKPVVEFMT-FNF 119 (370)
Q Consensus 43 ~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GI--aE~~~v~~A~GlA~~G~rp~~~t~~-~~f 119 (370)
+-+.|.+.+..+++.++++ |.+. .......+..-..|.+|++.+. +=-..+..|.|++++--|+++.+.. ..|
T Consensus 371 ~~~~l~~~l~~~~~~ivv~-d~~~---~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala~~~~vv~i~GDGsf 446 (554)
T TIGR03254 371 ALEAIRDVLKDNPDIYLVN-EGAN---TLDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVETGKPVVALEGDSAF 446 (554)
T ss_pred HHHHHHHhcCCCCCEEEEe-CCch---HHHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhcCCCcEEEEEcCchh
Confidence 4455666665445666554 3221 1111112222223788887642 2224556777777775577777655 223
Q ss_pred HHHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCCCC-----CC-----Cc--chHHHHHHHccCCCcEEEeeCCHH
Q 017513 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAAAG-----VG-----AQ--HSHCYAAWYASVPGLKVLSPYSSE 185 (370)
Q Consensus 120 ~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~~~-----~G-----~t--Hs~~~~a~~~~iP~~~V~~P~d~~ 185 (370)
.+-+.| ...++ +.++|++++. . +|.... .+ .. +..++.++-+.+ |..-+.-.+++
T Consensus 447 ~m~~~E--L~Ta~--------r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~-G~~~~~v~~~~ 515 (554)
T TIGR03254 447 GFSGME--VETIC--------RYNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAF-GGVGYNVTTPD 515 (554)
T ss_pred cccHHH--HHHHH--------HcCCCEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHHC-CCeEEEeCCHH
Confidence 322222 23455 3678887765 3 332110 01 11 111233444444 55667779999
Q ss_pred HHHHHHHHHHhCCCCEEEE
Q 017513 186 DARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 186 e~~~~l~~a~~~~~Pv~i~ 204 (370)
|+...++++++.++|++|-
T Consensus 516 el~~al~~a~~~~~p~lIe 534 (554)
T TIGR03254 516 ELKAALNEALASGKPTLIN 534 (554)
T ss_pred HHHHHHHHHHhCCCCEEEE
Confidence 9999999999989999884
No 141
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=87.08 E-value=13 Score=32.89 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=58.5
Q ss_pred CCcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcc-cCEEEEe-C-CCCC--CC
Q 017513 83 PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIS-VPIVFRG-P-NGAA--AG 157 (370)
Q Consensus 83 p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~-~pvv~~~-~-~G~~--~~ 157 (370)
|.+|+..|.- -..+..|.|++++-.+++++... +.....--|-...++. .+ .|++++. . ++.. +.
T Consensus 35 ~~~~~~~g~m-G~~lp~AiGaala~~~~vv~i~G-DG~f~m~~~el~ta~~--------~~~~~l~vvV~NN~~~~~~~~ 104 (179)
T cd03372 35 PLNFYMLGSM-GLASSIGLGLALAQPRKVIVIDG-DGSLLMNLGALATIAA--------EKPKNLIIVVLDNGAYGSTGN 104 (179)
T ss_pred ccccccccch-hhHHHHHHHHHhcCCCcEEEEEC-CcHHHhCHHHHHHHHH--------cCCCCEEEEEEcCccccccCC
Confidence 6777754422 24446788888764477777755 4432111122223332 33 3454443 3 3321 11
Q ss_pred --CCCcchHHHHHHHccCCCcEEEeeC-CHHHHHHHHHHHHhCCCCEEEEe
Q 017513 158 --VGAQHSHCYAAWYASVPGLKVLSPY-SSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 158 --~G~tHs~~~~a~~~~iP~~~V~~P~-d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
....+..++..+.++. |+.-.... +++|+...+.++. ++|.+|-.
T Consensus 105 ~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al~~a~--~gp~lIev 152 (179)
T cd03372 105 QPTHAGKKTDLEAVAKAC-GLDNVATVASEEAFEKAVEQAL--DGPSFIHV 152 (179)
T ss_pred CCCCCCCCCCHHHHHHHc-CCCeEEecCCHHHHHHHHHHhc--CCCEEEEE
Confidence 1111222333444443 45555566 9999999999998 78998743
No 142
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=86.96 E-value=15 Score=32.78 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=60.3
Q ss_pred CCcEeechhhHHHHHHHHHHHhccC-CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCccc-CEEEEe-C-CCC--CC
Q 017513 83 PERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRG-P-NGA--AA 156 (370)
Q Consensus 83 p~r~~~~GIaE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~-pvv~~~-~-~G~--~~ 156 (370)
|.+|++.|- =-..++.|.|++++. -+++++... +.....--|-...++ ..++ |++++. . ++. ..
T Consensus 41 ~~~~~~~g~-mG~~lpaAiGaala~p~~~Vv~i~G-DG~f~m~~~eL~ta~--------~~~l~~i~ivV~NN~~yg~~~ 110 (188)
T cd03371 41 AQDFLTVGS-MGHASQIALGIALARPDRKVVCIDG-DGAALMHMGGLATIG--------GLAPANLIHIVLNNGAHDSVG 110 (188)
T ss_pred cCceeecCc-cccHHHHHHHHHHhCCCCcEEEEeC-CcHHHhhccHHHHHH--------HcCCCCcEEEEEeCchhhccC
Confidence 488987542 222467778877653 456666644 443211112222333 2344 454443 3 332 11
Q ss_pred CCCC-cchHHHHHHHccCCCcE-EEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 157 GVGA-QHSHCYAAWYASVPGLK-VLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 157 ~~G~-tHs~~~~a~~~~iP~~~-V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
+... .+..++..+.+.+ |+. +....+++|+..+++++++.++|++|-.
T Consensus 111 ~~~~~~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~~~~p~lIev 160 (188)
T cd03371 111 GQPTVSFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALAADGPAFIEV 160 (188)
T ss_pred CcCCCCCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 1101 1112334455544 454 3456799999999999999889999853
No 143
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=86.96 E-value=16 Score=31.78 Aligned_cols=111 Identities=20% Similarity=0.172 Sum_probs=61.3
Q ss_pred CCcEeechhhH-HHHHHHHHHHhccC-CeeEEEcccchHH-HHHHHHHHHHhhhccccCCCCcccCEEEEe-CCC-CC--
Q 017513 83 PERVLDTPITE-AGFTGIGVGAAYYG-LKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNG-AA-- 155 (370)
Q Consensus 83 p~r~~~~GIaE-~~~v~~A~GlA~~G-~rp~~~t~~~~f~-~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G-~~-- 155 (370)
|.+|+..+-.= -..+..|.|++++- -+++++... +.. +.....+ ..+. ..++|++++. ..+ ..
T Consensus 40 ~~~~~~~~~g~mG~~lp~aiGaala~~~~~vv~i~G-DG~f~~~~~el-~ta~--------~~~~p~~~iV~nN~~~~~~ 109 (178)
T cd02002 40 PGSYFTLRGGGLGWGLPAAVGAALANPDRKVVAIIG-DGSFMYTIQAL-WTAA--------RYGLPVTVVILNNRGYGAL 109 (178)
T ss_pred CCCeeccCCccccchHHHHHHHHhcCCCCeEEEEEc-CchhhccHHHH-HHHH--------HhCCCeEEEEEcCccHHHH
Confidence 78888764311 12355777777663 355555543 322 2222222 2333 3578888775 222 11
Q ss_pred C-------CC--------CC---cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 156 A-------GV--------GA---QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 156 ~-------~~--------G~---tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
. +. +. .+..++..+.+.. |+..+.-.++.|+...++++.+.++|++|-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~vi~ 175 (178)
T cd02002 110 RSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAF-GVEAERVETPEELDEALREALAEGGPALIE 175 (178)
T ss_pred HHHHHHHcCCCcccccccccccCCCCCCHHHHHHHc-CCceEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 00 00 1111223444443 566677788999999999999988999873
No 144
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=86.58 E-value=9.9 Score=36.31 Aligned_cols=147 Identities=17% Similarity=0.090 Sum_probs=79.2
Q ss_pred ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccC-CeeEEEcc
Q 017513 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFM 115 (370)
Q Consensus 37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G-~rp~~~t~ 115 (370)
-+.-.++.+++.++-...++.+++ .|.+.+ .....+ +.+..+.-. =-..+.+|.|++++. -+++++..
T Consensus 17 ~~i~~~~~~a~~~l~~~p~d~ivv-sdiG~~----~~~~~~---~~~~~~~~~---mG~alp~AiGaklA~pd~~VVai~ 85 (280)
T PRK11869 17 FGIRNALMKALSELNLKPRQVVIV-SGIGQA----AKMPHY---INVNGFHTL---HGRAIPAATAVKATNPELTVIAEG 85 (280)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEE-eCchHh----hhHHHH---ccCCCCCcc---cccHHHHHHHHHHHCCCCcEEEEE
Confidence 346688888887765555555544 455521 111111 112222111 123567777777775 47777764
Q ss_pred cchHHHHH--HHHHHHHhhhccccCCCCcccCEEEEe-CC---CCCCC-------C---------CCcch-HHHHHHHcc
Q 017513 116 TFNFSMQA--IDHIINSAAKSNYMSSGQISVPIVFRG-PN---GAAAG-------V---------GAQHS-HCYAAWYAS 172 (370)
Q Consensus 116 ~~~f~~ra--~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~---G~~~~-------~---------G~tHs-~~~~a~~~~ 172 (370)
. +..... +..+.+ ++ ..++|++++. .. |..++ . |.... .++..+..+
T Consensus 86 G-DG~~~~iG~~eL~t-A~--------r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a 155 (280)
T PRK11869 86 G-DGDMYAEGGNHLIH-AI--------RRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIA 155 (280)
T ss_pred C-chHHhhCcHHHHHH-HH--------HhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHH
Confidence 4 555332 455543 44 3577877765 12 21111 0 10011 122233333
Q ss_pred --CCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 173 --VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 173 --iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
.+.+....+.++.|+...++.|++.++|++|-
T Consensus 156 ~G~~~va~~~~~~~~~l~~~i~~Al~~~Gp~lIe 189 (280)
T PRK11869 156 LDASFVARTFSGDIEETKEILKEAIKHKGLAIVD 189 (280)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 44344444999999999999999999999984
No 145
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=86.18 E-value=10 Score=39.75 Aligned_cols=113 Identities=16% Similarity=0.127 Sum_probs=67.8
Q ss_pred cEeechhhHHHHHHHHHHHhccCCee--EEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYYGLKP--VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~G~rp--~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~ 160 (370)
||+.+- .|++++.+|-|.|+...+| ++.|..| .+..++.-|.+. + ..++||+++....... +.|.
T Consensus 49 ~~v~~~-hE~~A~~aAdgyar~tg~~~v~~vt~Gp-G~~N~l~~i~~A--~-------~~~~Pvl~IsG~~~~~~~~~~~ 117 (568)
T PRK07449 49 RLHTHF-DERSAGFLALGLAKASKRPVAVIVTSGT-AVANLYPAVIEA--G-------LTGVPLIVLTADRPPELRDCGA 117 (568)
T ss_pred EEEeec-CcccHHHHHHHHHHhhCCCEEEEECCcc-HHHhhhHHHHHH--h-------hcCCcEEEEECCCCHHHhcCCC
Confidence 566654 9999999999999884443 4555554 445566666532 2 3789999986322211 2344
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHH-----HHHHHHHHHH---h-CCCCEEEEeccc
Q 017513 161 QHSHCYAAWYASVPGLKVLSPYSSE-----DARGLLKAAI---R-DPDPVVFLENEL 208 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~-----e~~~~l~~a~---~-~~~Pv~i~~~~~ 208 (370)
.|..+..++++.+-...+-.|.... .+..+++.+. . .++||+|-.|..
T Consensus 118 ~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~D 174 (568)
T PRK07449 118 NQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFR 174 (568)
T ss_pred CceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCC
Confidence 4433335788776555555565521 1233455433 2 369999987754
No 146
>PLN02573 pyruvate decarboxylase
Probab=85.95 E-value=16 Score=38.48 Aligned_cols=112 Identities=16% Similarity=0.122 Sum_probs=65.8
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeEE-EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC---CCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVV-EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA---AGVG 159 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~---~~~G 159 (370)
||+.+ -.|+++..||-|.|+. | .+++ .|+.|.. ..+..-+.+.. ..++||+++...-.. +..+
T Consensus 56 ~~i~~-rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~-~n~~~gla~A~---------~d~~Pvl~I~G~~~~~~~~~~~ 123 (578)
T PLN02573 56 NLIGC-CNELNAGYAADGYARARG-VGACVVTFTVGG-LSVLNAIAGAY---------SENLPVICIVGGPNSNDYGTNR 123 (578)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhC-CCeEEEecCccH-HHHHHHHHHHH---------HhCCCEEEEECCCChhhhhcCc
Confidence 45544 4899999999999987 7 5554 4444444 44555554332 268999998531111 1122
Q ss_pred CcchH-------HHHHHHccCCCcEEEeeCCHHHHHHHHHHHH----hCCCCEEEEecccc
Q 017513 160 AQHSH-------CYAAWYASVPGLKVLSPYSSEDARGLLKAAI----RDPDPVVFLENELL 209 (370)
Q Consensus 160 ~tHs~-------~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~----~~~~Pv~i~~~~~l 209 (370)
..|+. ...++++.+-.+ .....+++++...++.|+ ..++||||-.|..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~itk~-s~~v~~~~~~~~~l~~A~~~A~~~~gPV~l~iP~Dv 183 (578)
T PLN02573 124 ILHHTIGLPDFSQELRCFQTVTCY-QAVINNLEDAHELIDTAISTALKESKPVYISVSCNL 183 (578)
T ss_pred eeeeecCCCChHHHHHHhhceEEE-EEEeCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhh
Confidence 22311 113677765433 344455666655555555 45789999887654
No 147
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=85.43 E-value=3.6 Score=41.66 Aligned_cols=114 Identities=18% Similarity=0.124 Sum_probs=63.7
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CCCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~~G~ 160 (370)
+++.+ ..|+++.-||-|.|+. |...+ +.|..| ....++.-+.+. + ..++||+++...-.. .+.|.
T Consensus 40 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~Gp-G~~N~l~gl~~A--~-------~~~~Pvl~i~g~~~~~~~~~~~ 108 (432)
T TIGR00173 40 RVHVH-IDERSAGFFALGLAKASGRPVAVVCTSGT-AVANLLPAVIEA--S-------YSGVPLIVLTADRPPELRGCGA 108 (432)
T ss_pred EEEEe-cCCccHHHHHHHHHhccCCCEEEEECCcc-hHhhhhHHHHHh--c-------ccCCcEEEEeCCCCHHHhCCCC
Confidence 55554 5999999999999998 53333 444444 444455555432 2 378999998522111 12233
Q ss_pred cchHHHHHHHccCCCcEE--EeeCC-------HHHHHHHHHHHHh-CCCCEEEEecccc
Q 017513 161 QHSHCYAAWYASVPGLKV--LSPYS-------SEDARGLLKAAIR-DPDPVVFLENELL 209 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V--~~P~d-------~~e~~~~l~~a~~-~~~Pv~i~~~~~l 209 (370)
.+..+..++++.+-.+.. -.|.+ +..+.++++.|.. .++||+|-.|...
T Consensus 109 ~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 109 NQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred CcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 232222467776554333 23443 1233444444444 3589999877543
No 148
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=85.14 E-value=4.9 Score=42.09 Aligned_cols=112 Identities=21% Similarity=0.209 Sum_probs=67.7
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.+|+..+- +=-..+..|.|++++. -+++++... ..|.+.+.| + ..+. ..++|++++. ..|..+
T Consensus 409 ~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~~~~~e-L-~ta~--------~~~lpvi~vV~NN~~~g~ 478 (564)
T PRK08155 409 PRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQE-M-ATAA--------ENQLDVKIILMNNEALGL 478 (564)
T ss_pred CCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccchhhccHHH-H-HHHH--------HhCCCeEEEEEeCCcccc
Confidence 788997643 3334677888888774 355555544 334433333 2 2333 3578887765 333111
Q ss_pred ---------C---CCCc--chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 157 ---------G---VGAQ--HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 157 ---------~---~G~t--Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
+ .+.. +..++.++.+++ |+.-....+.+|+...++.+++.++|++|-.
T Consensus 479 ~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIeV 540 (564)
T PRK08155 479 VHQQQSLFYGQRVFAATYPGKINFMQIAAGF-GLETCDLNNEADPQAALQEAINRPGPALIHV 540 (564)
T ss_pred cHHHHHHhcCCCeeeccCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 0 1111 112334555555 6777889999999999999999899999853
No 149
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=85.08 E-value=9.4 Score=39.89 Aligned_cols=111 Identities=14% Similarity=0.187 Sum_probs=64.0
Q ss_pred CCcEeech-hh-HHHHHHHHHHHhccC--CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC
Q 017513 83 PERVLDTP-IT-EAGFTGIGVGAAYYG--LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA 155 (370)
Q Consensus 83 p~r~~~~G-Ia-E~~~v~~A~GlA~~G--~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~ 155 (370)
|.+|+..+ .. =-..+..|.|++++. -|+++++.. +... .....+ ..+. ..++|++++. . +|..
T Consensus 386 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i~G-DGsf~~~~~eL-~Ta~--------~~~lpi~ivV~NN~~~g 455 (549)
T PRK06457 386 EQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISFVG-DGGFTMTMMEL-ITAK--------KYDLPVKIIIYNNSKLG 455 (549)
T ss_pred CCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEEEc-ccHHhhhHHHH-HHHH--------HHCCCeEEEEEECCccc
Confidence 67777642 11 112455778888774 477777654 4332 222222 3344 3577877765 2 3321
Q ss_pred --------CCC---CCc-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 156 --------AGV---GAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 156 --------~~~---G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
.+. +.. +..++.++-.++ |..-....+++|+...++++++.++|.+|-
T Consensus 456 ~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 515 (549)
T PRK06457 456 MIKFEQEVMGYPEWGVDLYNPDFTKIAESI-GFKGFRLEEPKEAEEIIEEFLNTKGPAVLD 515 (549)
T ss_pred hHHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 000 111 111233444444 667778899999999999999989999984
No 150
>PRK08617 acetolactate synthase; Reviewed
Probab=84.86 E-value=6.7 Score=40.96 Aligned_cols=111 Identities=23% Similarity=0.284 Sum_probs=64.6
Q ss_pred hCCCcEeechhhHHHHHH----HHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCC
Q 017513 81 YGPERVLDTPITEAGFTG----IGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNG 153 (370)
Q Consensus 81 ~~p~r~~~~GIaE~~~v~----~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G 153 (370)
+.|.+|+..+ -...+| .|.|++++. -++++++.. ..|.+.+.| + ..+. ..++|++++. ..|
T Consensus 402 ~~p~~~~~~~--~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~e-L-~Ta~--------~~~lpv~~vV~NN~ 469 (552)
T PRK08617 402 YEPRHLLFSN--GMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLFSAME-L-ETAV--------RLKLNIVHIIWNDG 469 (552)
T ss_pred cCCCeEEecC--ccccccccccHHHhhHhhcCCCcEEEEEechHHhhhHHH-H-HHHH--------HhCCCeEEEEEECC
Confidence 3377887643 123555 888888763 356665544 223333222 2 3344 3678887665 333
Q ss_pred CCCC------------CCCc-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 154 AAAG------------VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 154 ~~~~------------~G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
..+- .|.. +..++.++-+.+ |+.-....+++|+...++++++.++|.+|-
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lie 532 (552)
T PRK08617 470 HYNMVEFQEEMKYGRSSGVDFGPVDFVKYAESF-GAKGLRVTSPDELEPVLREALATDGPVVID 532 (552)
T ss_pred ccchHHHHHHhhcCCcccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCcEEEE
Confidence 2110 0111 112223444444 677788999999999999999888999984
No 151
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=84.72 E-value=8.7 Score=33.74 Aligned_cols=98 Identities=22% Similarity=0.247 Sum_probs=51.2
Q ss_pred HHHHHHHhccC-CeeEEEcccchHHH--HHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCC--CCCC----C-----C
Q 017513 97 TGIGVGAAYYG-LKPVVEFMTFNFSM--QAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGA--AAGV----G-----A 160 (370)
Q Consensus 97 v~~A~GlA~~G-~rp~~~t~~~~f~~--ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~--~~~~----G-----~ 160 (370)
++.|.|++++. -++++.... +... -++..+. .+. ..++|++++. . .+. .+.. + .
T Consensus 57 l~~AiGa~la~p~~~Vv~i~G-DG~f~~~g~~eL~-ta~--------~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~ 126 (178)
T cd02008 57 IGVAIGMAKASEDKKVVAVIG-DSTFFHSGILGLI-NAV--------YNKANITVVILDNRTTAMTGGQPHPGTGKTLTE 126 (178)
T ss_pred HHHHhhHHhhCCCCCEEEEec-ChHHhhccHHHHH-HHH--------HcCCCEEEEEECCcceeccCCCCCCCCcccccC
Confidence 34666666653 456666544 4443 2233333 333 3678887765 2 222 1110 0 0
Q ss_pred cch-HHHHHHHcc--CCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 161 QHS-HCYAAWYAS--VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 161 tHs-~~~~a~~~~--iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
.+. .++..+.++ +....|-.|.+-+++...++.+++.++|.+|.
T Consensus 127 ~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~~~gp~lI~ 173 (178)
T cd02008 127 PTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALAVPGVSVII 173 (178)
T ss_pred CCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHhCCCCEEEE
Confidence 011 223344444 44445555555555568889999889999884
No 152
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=83.84 E-value=4.8 Score=36.16 Aligned_cols=111 Identities=15% Similarity=0.118 Sum_probs=63.2
Q ss_pred CCcEeechh-h-HHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCCC
Q 017513 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG 157 (370)
Q Consensus 83 p~r~~~~GI-a-E~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~~ 157 (370)
|.+|++.+- . =-..+..|.|++++. -|+++++.. +... ... |-...+. ..++|++++. ..+..+-
T Consensus 47 ~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~G-DG~f~m~~-~eL~Ta~--------~~~lpviivV~NN~~yg~ 116 (202)
T cd02006 47 PRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSG-DYDFQFMI-EELAVGA--------QHRIPYIHVLVNNAYLGL 116 (202)
T ss_pred CCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEe-ChHhhccH-HHHHHHH--------HhCCCeEEEEEeCchHHH
Confidence 788998642 2 122556888887763 467776654 3332 222 2222333 3678887775 2321110
Q ss_pred ---------C----CCcc-----------hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEE
Q 017513 158 ---------V----GAQH-----------SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFL 204 (370)
Q Consensus 158 ---------~----G~tH-----------s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~ 204 (370)
. +..+ ..++..+-+++ |+.-+...++.|+...++.+++ .++|++|-
T Consensus 117 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~~p~lie 190 (202)
T cd02006 117 IRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGL-GCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVE 190 (202)
T ss_pred HHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEE
Confidence 0 0001 01122333333 5677888999999999999995 57899884
No 153
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=83.60 E-value=21 Score=34.49 Aligned_cols=143 Identities=18% Similarity=0.089 Sum_probs=75.3
Q ss_pred ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechh---hHHHHHHHHHHHhcc-CCeeEE
Q 017513 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI---TEAGFTGIGVGAAYY-GLKPVV 112 (370)
Q Consensus 37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GI---aE~~~v~~A~GlA~~-G~rp~~ 112 (370)
-..-.++.++|.++.-..++++++ .|+|.+. .. | +|+++.- .=-.++.+|.|++++ .-++++
T Consensus 27 ~~i~~~i~~al~~l~l~p~d~viv-sdiG~s~-----------~~-~-~yl~~~~~~g~mG~alpaAiGaklA~pd~~VV 92 (301)
T PRK05778 27 FGILNAIIQALAELGLDPDKVVVV-SGIGCSS-----------KI-P-GYFLSHGLHTLHGRAIAFATGAKLANPDLEVI 92 (301)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEE-eCCcHhh-----------hh-h-hhcccCccchhhccHHHHHHHHHHHCCCCcEE
Confidence 345567777777663323444444 3666211 11 1 1333211 002356677887776 346666
Q ss_pred EcccchHH--HHHHHHHHHHhhhccccCCCCcccCEEEEe-CC---CCCCCC-------C---------Cc-chHHHHHH
Q 017513 113 EFMTFNFS--MQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN---GAAAGV-------G---------AQ-HSHCYAAW 169 (370)
Q Consensus 113 ~t~~~~f~--~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~---G~~~~~-------G---------~t-Hs~~~~a~ 169 (370)
++.. +.. ......+.+ ++ +.++|++++. .. |..++. | .. +..++..+
T Consensus 93 ~i~G-DG~~~~mg~~eL~t-A~--------r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~l 162 (301)
T PRK05778 93 VVGG-DGDLASIGGGHFIH-AG--------RRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCAL 162 (301)
T ss_pred EEeC-ccHHHhccHHHHHH-HH--------HHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHH
Confidence 6644 443 233444543 34 3678877765 22 211110 1 00 01122233
Q ss_pred HccCCCcEEE---eeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 170 YASVPGLKVL---SPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 170 ~~~iP~~~V~---~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
..+. |..-+ ...++.|+..+++.|++.++|++|-
T Consensus 163 A~a~-G~~~va~~~v~~~~eL~~ai~~A~~~~GpalIe 199 (301)
T PRK05778 163 ALAA-GATFVARSFAGDVKQLVELIKKAISHKGFAFID 199 (301)
T ss_pred HHHC-CCCEEEEeccCCHHHHHHHHHHHHhCCCCEEEE
Confidence 3333 44433 6899999999999999999999984
No 154
>PRK06154 hypothetical protein; Provisional
Probab=82.86 E-value=13 Score=39.11 Aligned_cols=149 Identities=19% Similarity=0.105 Sum_probs=85.7
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-C-CeeEE
Q 017513 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-G-LKPVV 112 (370)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G-~rp~~ 112 (370)
+.++..+++.+.|.++. =+.|+.-+ + . .+.+.+.+ - .=||+.+ -.|++++.+|.|.|+. | .+|-+
T Consensus 18 ~~~~~a~~l~~~L~~~G---V~~vFGip--~----~-~l~dal~~-~-~i~~i~~-rhE~~A~~mAdgyar~t~g~~~gv 84 (565)
T PRK06154 18 KTMKVAEAVAEILKEEG---VELLFGFP--V----N-ELFDAAAA-A-GIRPVIA-RTERVAVHMADGYARATSGERVGV 84 (565)
T ss_pred CcccHHHHHHHHHHHcC---CCEEEeCc--C----H-HHHHHHHh-c-CCeEEee-CcHHHHHHHHHHHHHhcCCCCCEE
Confidence 34445666666665432 23333322 1 1 22344432 2 2467765 4999999999999986 3 34444
Q ss_pred --EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCCcchHHHHHHHccCCCcEEEeeCCHHHHH
Q 017513 113 --EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDAR 188 (370)
Q Consensus 113 --~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~ 188 (370)
.|..|.++ .+..-+.+ |+ ..++||+++....... +.+..+.+ ..+++.+-.+ .....+++++.
T Consensus 85 ~~~t~GPG~~-N~~~gla~--A~-------~~~~Pvl~i~G~~~~~~~~~~~~~d~--~~~~~~vtk~-~~~v~~~~~~~ 151 (565)
T PRK06154 85 FAVQYGPGAE-NAFGGVAQ--AY-------GDSVPVLFLPTGYPRGSTDVAPNFES--LRNYRHITKW-CEQVTLPDEVP 151 (565)
T ss_pred EEECCCccHH-HHHHHHHH--Hh-------hcCCCEEEEeCCCCcccccCCCCcch--hhhHhhccee-EEECCCHHHHH
Confidence 45565554 45555543 22 3789999885211111 11222322 3677776543 55677888888
Q ss_pred HHHHHHHh-----CCCCEEEEecccc
Q 017513 189 GLLKAAIR-----DPDPVVFLENELL 209 (370)
Q Consensus 189 ~~l~~a~~-----~~~Pv~i~~~~~l 209 (370)
..++.|++ .++||||-.|..+
T Consensus 152 ~~i~~A~~~A~s~~~GPV~l~iP~Dv 177 (565)
T PRK06154 152 ELMRRAFTRLRNGRPGPVVLELPVDV 177 (565)
T ss_pred HHHHHHHHHHhcCCCceEEEecchHH
Confidence 77777775 3689999877654
No 155
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=82.51 E-value=3.4 Score=32.07 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=45.7
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHh-c----CCeEEEEecCCCCCChHHH
Q 017513 238 GKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-K----TNRLVTVEEGFPQHGVGAE 308 (370)
Q Consensus 238 g~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~-~----~~~vvvvEe~~~~GGlg~~ 308 (370)
+.+++|++.| +....+.+|.+.|++.|++.+.+|+.. |.+ +.+.+. . +=+.|++... ..||+...
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~----~~~-~~~~l~~~~g~~tvP~vfi~g~-~iGG~~~l 80 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILE----DEE-VRQGLKEYSNWPTFPQLYVNGE-LVGGCDIV 80 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCC----CHH-HHHHHHHHhCCCCCCEEEECCE-EEeCHHHH
Confidence 4679999988 477888899999999999999999753 333 333322 1 2245666654 46888754
Q ss_pred H
Q 017513 309 I 309 (370)
Q Consensus 309 i 309 (370)
.
T Consensus 81 ~ 81 (90)
T cd03028 81 K 81 (90)
T ss_pred H
Confidence 3
No 156
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=81.65 E-value=9.1 Score=40.54 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=65.1
Q ss_pred CCcEeechhhHHHHHHHHHHHhccC-CeeEEEcccchHHHH--HHHHHHHHhhhccccCCCCcccCEEEEe-CCC-C--C
Q 017513 83 PERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQ--AIDHIINSAAKSNYMSSGQISVPIVFRG-PNG-A--A 155 (370)
Q Consensus 83 p~r~~~~GIaE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~r--a~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G-~--~ 155 (370)
|.++++...+=-..++.|.|++++. -+++++... +.... .+..+.. +. ..++|++++. ..+ . .
T Consensus 395 p~~~~~~~~~mG~~~~~AiGa~~a~p~~~Vv~i~G-DG~f~~~g~~eL~t-av--------~~~~~i~~vVlnN~~~g~~ 464 (595)
T TIGR03336 395 PLGTVDTTLCMGASIGVASGLSKAGEKQRIVAFIG-DSTFFHTGIPGLIN-AV--------YNKANITVVILDNRITAMT 464 (595)
T ss_pred CccccceeeccCchHHHHhhhhhcCCCCCEEEEec-cchhhhcCHHHHHH-HH--------HcCCCeEEEEEcCcceecc
Confidence 5566665322233445677777653 567777654 44332 2344433 33 2577877765 222 1 1
Q ss_pred CCC-----CCc------chHHHHHHHc--cCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 156 AGV-----GAQ------HSHCYAAWYA--SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 156 ~~~-----G~t------Hs~~~~a~~~--~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
++. +.+ +..++.++.+ .+....|..|.+.+|+...++++++.++|.+|..
T Consensus 465 ~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~~~gp~li~v 527 (595)
T TIGR03336 465 GHQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALAAEGVSVIIA 527 (595)
T ss_pred CCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 110 100 1122334444 3667788888888999999999999999998854
No 157
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=81.49 E-value=12 Score=39.21 Aligned_cols=111 Identities=19% Similarity=0.155 Sum_probs=65.4
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.+|++.|- +--..++.|.|++++. -++++.+.. ..|.+.+-+ ...++ ..++|++++. ..|..+
T Consensus 402 p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~~GDG~f~~~~~e--L~ta~--------~~~l~~~~vv~NN~~~~~ 471 (558)
T TIGR00118 402 PRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICITGDGSFQMNLQE--LSTAV--------QYDIPVKILILNNRYLGM 471 (558)
T ss_pred CCeEEeCCccccccchhhHHHhhhhhCCCCcEEEEEcchHHhccHHH--HHHHH--------HhCCCeEEEEEeCCchHH
Confidence 788998753 2334667888887773 355555544 223332222 22344 3678877765 333211
Q ss_pred ---------CC---CCc-chHHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 157 ---------GV---GAQ-HSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 157 ---------~~---G~t-Hs~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
+. ... +...+ ..+...+ |+.-+.-.+++|+...+..+++.++|++|-
T Consensus 472 ~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~p~lie 532 (558)
T TIGR00118 472 VRQWQELFYEERYSHTHMGSLPDFVKLAEAY-GIKGIRIEKPEELDEKLKEALSSNEPVLLD 532 (558)
T ss_pred HHHHHHHhcCCceeeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 10 111 11222 3444444 666778888999999999999999999984
No 158
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=81.46 E-value=8.1 Score=29.26 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=38.7
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCC
Q 017513 240 DVTITAFSK-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300 (370)
Q Consensus 240 dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~ 300 (370)
++.|++.+. ....|++.++.|+.+|+++.+ |.+. +.+....-...-.+...++++.+..
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~-d~~~-~~~~~~~~~a~~~g~~~~iiig~~e 62 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEV-DLRN-EKLGKKIREAQLQKIPYILVVGDKE 62 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEE-ECCC-CCHHHHHHHHHHcCCCEEEEECcch
Confidence 566777764 567899999999999999977 4443 4554442222233455677777654
No 159
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=80.67 E-value=4.1 Score=29.96 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=42.3
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcC-CeEEEEecCCCCCChHHH
Q 017513 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT-NRLVTVEEGFPQHGVGAE 308 (370)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~-~~vvvvEe~~~~GGlg~~ 308 (370)
+++|.+. +....+.+|.+.|++.|++.+.+|+..-.+ ..+.+.+..... -+.|++... ..||+.+.
T Consensus 2 ~v~ly~~-~~C~~C~ka~~~L~~~gi~~~~~di~~~~~-~~~el~~~~g~~~vP~v~i~~~-~iGg~~~~ 68 (73)
T cd03027 2 RVTIYSR-LGCEDCTAVRLFLREKGLPYVEINIDIFPE-RKAELEERTGSSVVPQIFFNEK-LVGGLTDL 68 (73)
T ss_pred EEEEEec-CCChhHHHHHHHHHHCCCceEEEECCCCHH-HHHHHHHHhCCCCcCEEEECCE-EEeCHHHH
Confidence 3555554 455778889999999999999999875322 223344443332 256666654 56887653
No 160
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=80.62 E-value=13 Score=38.91 Aligned_cols=112 Identities=19% Similarity=0.169 Sum_probs=66.4
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.+|++.+- +=-..++.|.|++++- -+++++... ..|.+-..| + ..+. ..++|++++. ..|..+
T Consensus 404 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~e-L-~Ta~--------~~~l~i~~vV~NN~~y~~ 473 (561)
T PRK06048 404 PRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDGSFQMNSQE-L-ATAV--------QNDIPVIVAILNNGYLGM 473 (561)
T ss_pred CCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCchhhccHHH-H-HHHH--------HcCCCeEEEEEECCccHH
Confidence 778997542 3344677888888873 366666654 223332222 2 3343 3577877665 333211
Q ss_pred ---------C---CCCc--chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 157 ---------G---VGAQ--HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 157 ---------~---~G~t--Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
+ .+.. +..++.++-+.+ |..-..-.+..|+...+..++..++|++|-.
T Consensus 474 i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~t~~el~~al~~a~~~~~p~liev 535 (561)
T PRK06048 474 VRQWQELFYDKRYSHTCIKGSVDFVKLAEAY-GALGLRVEKPSEVRPAIEEAVASDRPVVIDF 535 (561)
T ss_pred HHHHHHHHcCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence 0 0110 112223444444 6677888999999999999999999999843
No 161
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=80.34 E-value=9.5 Score=40.17 Aligned_cols=109 Identities=21% Similarity=0.259 Sum_probs=61.4
Q ss_pred CCcEeechhhHHHH----HHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCC
Q 017513 83 PERVLDTPITEAGF----TGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAA 155 (370)
Q Consensus 83 p~r~~~~GIaE~~~----v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~ 155 (370)
|.+|+..+- ... +..|.|++++- -++++++.. ..|.+-+ ..+ ..++ ..++|++++. ..+..
T Consensus 398 ~~~~~~s~~--~gsmG~~~paAiGa~la~p~~~vv~i~GDGsf~~~~-~el-~Ta~--------~~~lpv~~vV~NN~~~ 465 (578)
T PRK06546 398 RRRVIGSFR--HGSMANALPHAIGAQLADPGRQVISMSGDGGLSMLL-GEL-LTVK--------LYDLPVKVVVFNNSTL 465 (578)
T ss_pred CceEEccCC--cccccchhHHHHHHHHhCCCCcEEEEEcCchHhhhH-HHH-HHHH--------HhCCCeEEEEEECCcc
Confidence 567776432 233 34778877763 345555544 2333322 222 3444 3678887775 22221
Q ss_pred CC-------CC-Cc-----chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 156 AG-------VG-AQ-----HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 156 ~~-------~G-~t-----Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
+- .| .. +..++..+-.++ |..-..-.+++|+..+++++++.++|++|-
T Consensus 466 g~i~~~q~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 526 (578)
T PRK06546 466 GMVKLEMLVDGLPDFGTDHPPVDYAAIAAAL-GIHAVRVEDPKDVRGALREAFAHPGPALVD 526 (578)
T ss_pred ccHHHHHHhcCCCcccccCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 10 11 11 111223344443 455666789999999999999999999984
No 162
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=80.31 E-value=14 Score=38.84 Aligned_cols=147 Identities=18% Similarity=0.284 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechh--hHHHHHHHHHHHhccCCeeEEEccc-chH
Q 017513 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYYGLKPVVEFMT-FNF 119 (370)
Q Consensus 43 ~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GI--aE~~~v~~A~GlA~~G~rp~~~t~~-~~f 119 (370)
+.+.|.+.+...++.++++ |.+ .+......+..-..|.+|++.+- +=-..+..|.|++++--++++.+.. ..|
T Consensus 378 ~~~~l~~~l~~~~d~iv~~-~~~---~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~~~~vv~i~GDG~f 453 (569)
T PRK09259 378 ALGAIRDVLKENPDIYLVN-EGA---NTLDLARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVETGKPVVAIEGDSAF 453 (569)
T ss_pred HHHHHHHHhCCCCCEEEEe-Cch---HHHHHHHHhcccCCCCceEeCCCCccccccHHHHHHHHhcCCCcEEEEecCccc
Confidence 4456666665444666554 322 11111111222222788887642 1112566777877775566666654 222
Q ss_pred HHHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC-C------C-C---CCcc--hHHHHHHHccCCCcEEEeeCCH
Q 017513 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA-A------G-V---GAQH--SHCYAAWYASVPGLKVLSPYSS 184 (370)
Q Consensus 120 ~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~-~------~-~---G~tH--s~~~~a~~~~iP~~~V~~P~d~ 184 (370)
.+-.-| ...++ ..++|++++. . +|.. . + . +... ..++.++-+++ |..-+.-.++
T Consensus 454 ~m~~~E--L~Ta~--------r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~ 522 (569)
T PRK09259 454 GFSGME--VETIC--------RYNLPVTVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAF-GGVGYNVTTP 522 (569)
T ss_pred cccHHH--HHHHH--------HcCCCEEEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHHHHHHC-CCeEEEECCH
Confidence 222222 23444 3678887775 3 3320 0 0 0 1111 11223344444 5667777999
Q ss_pred HHHHHHHHHHHhCCCCEEEE
Q 017513 185 EDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 185 ~e~~~~l~~a~~~~~Pv~i~ 204 (370)
.|+...+++++..++|++|-
T Consensus 523 ~el~~al~~a~~~~~p~lIe 542 (569)
T PRK09259 523 DELRHALTEAIASGKPTLIN 542 (569)
T ss_pred HHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999984
No 163
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=80.22 E-value=16 Score=32.76 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcc----C-CeeEEEcccchHH-H--HHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCCCCCcchH
Q 017513 94 AGFTGIGVGAAYY----G-LKPVVEFMTFNFS-M--QAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSH 164 (370)
Q Consensus 94 ~~~v~~A~GlA~~----G-~rp~~~t~~~~f~-~--ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~~G~tHs~ 164 (370)
-+.+++|+|+|++ | -+.+++... +.. + ..++.+. .++. ...|++++.. .+.. -++++..
T Consensus 78 G~gl~~A~G~Ala~k~~~~~~~vv~~~G-DG~~~eG~~~Eal~-~A~~--------~~~~li~vvdnN~~~-~~~~~~~- 145 (195)
T cd02007 78 STSISAALGMAVARDLKGKKRKVIAVIG-DGALTGGMAFEALN-NAGY--------LKSNMIVILNDNEMS-ISPNVGT- 145 (195)
T ss_pred hhhHHHHHHHHHHHHHhCCCCeEEEEEc-ccccccChHHHHHH-HHHH--------hCCCEEEEEECCCcc-cCCCCCC-
Confidence 3455667777765 2 234444433 433 2 4455553 3442 4678888764 3322 2222221
Q ss_pred HHHHHHccCCCcEE---EeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 165 CYAAWYASVPGLKV---LSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 165 ~~~a~~~~iP~~~V---~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
....++.. |+.+ +...|.+++...++.+.+.++|++|..
T Consensus 146 -~~~~~~a~-G~~~~~~vdG~d~~~l~~a~~~a~~~~~P~~I~~ 187 (195)
T cd02007 146 -PGNLFEEL-GFRYIGPVDGHNIEALIKVLKEVKDLKGPVLLHV 187 (195)
T ss_pred -HHHHHHhc-CCCccceECCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 22344442 3333 466688999999988887788999853
No 164
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=79.92 E-value=17 Score=37.86 Aligned_cols=111 Identities=11% Similarity=0.117 Sum_probs=65.1
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCCC
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAAA 156 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~~ 156 (370)
|.+|+..+- +=-..+..|.|++++. -++++++.. ..|.+-+.| + ..+. ..++|++++. . +|...
T Consensus 391 ~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~~~~~e-L-~ta~--------~~~l~v~ivV~NN~~~~~ 460 (548)
T PRK08978 391 PENFITSSGLGTMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNVQE-L-GTIK--------RKQLPVKIVLLDNQRLGM 460 (548)
T ss_pred CCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEEEccchhhccHHH-H-HHHH--------HhCCCeEEEEEeCCccHH
Confidence 788887532 1122467788888773 567776654 223322222 2 2333 3577877765 2 33210
Q ss_pred ---------C---CCCc--chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 157 ---------G---VGAQ--HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 157 ---------~---~G~t--Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
+ .+.. +..++..+.+.+ |..-....+++|+...++.+++.++|.+|-
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 521 (548)
T PRK08978 461 VRQWQQLFFDERYSETDLSDNPDFVMLASAF-GIPGQTITRKDQVEAALDTLLNSEGPYLLH 521 (548)
T ss_pred HHHHHHHHhCCcceecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0111 111223444444 677788899999999999999989999984
No 165
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=79.84 E-value=15 Score=38.71 Aligned_cols=142 Identities=20% Similarity=0.252 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEccc-c
Q 017513 39 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMT-F 117 (370)
Q Consensus 39 ~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~-~ 117 (370)
...++..+..++.... ..|+| +-++++.. |=+-.|+-++=-+.+++|.|++.+.-+.++++.. +
T Consensus 391 sf~~~k~~~~~~~~~~------~~DIG--Cytlg~~~-------P~~~~d~t~~mGssig~a~g~~~~~~k~~va~iGDs 455 (640)
T COG4231 391 SFYALKKAAAELGGHP------SGDIG--CYTLGILP-------PLNTVDTTTMMGSSIGIAGGLSFASTKKIVAVIGDS 455 (640)
T ss_pred hhHHHHHHHHhhCCCC------CCCcc--eeecccCC-------CcchhhhhhhccchhhhccccccccCCceEEEeccc
Confidence 4456666665544333 77887 33333322 4444555555556688999999665555555544 5
Q ss_pred hHHHHHHHHHHHHhhhccccCCCCcccCEEEEe---C-CCCCCC---C-------C--CcchHHHHHHHcc--CCCcEEE
Q 017513 118 NFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG---P-NGAAAG---V-------G--AQHSHCYAAWYAS--VPGLKVL 179 (370)
Q Consensus 118 ~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~---~-~G~~~~---~-------G--~tHs~~~~a~~~~--iP~~~V~ 179 (370)
+|..-++..|+|.+. ++.+++++. + ..-+|+ . | .++ ...+.+-+. +--+.+.
T Consensus 456 TF~HsGi~~l~nAV~---------n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~-i~iee~~r~~Gv~~v~~v 525 (640)
T COG4231 456 TFFHSGILALINAVY---------NKANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTA-IVIEEVVRAMGVEDVETV 525 (640)
T ss_pred cccccCcHHHHHHHh---------cCCCeEEEEEeccchhccCCCCCCCcccccCCCccce-eEhhHhhhhcCceeeecc
Confidence 666778888887664 455555543 1 111111 1 1 111 111233332 3446677
Q ss_pred eeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 180 SPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 180 ~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
.|-|-.++.+.++.+++.++|.+|..
T Consensus 526 dp~~~~~~~~~~keale~~gpsViia 551 (640)
T COG4231 526 DPYDVKELSEAIKEALEVPGPSVIIA 551 (640)
T ss_pred CCcchHHHHHHHHHHhcCCCceEEEE
Confidence 79999999999999999999999864
No 166
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=79.23 E-value=7.6 Score=38.34 Aligned_cols=107 Identities=19% Similarity=0.136 Sum_probs=63.1
Q ss_pred chhhHHHHHHHHHHHhccCCee-EEEcccchHH--H-HHHHHHHHHhhhccccCCCCcccCEEEEeC-CC--CCCCCCCc
Q 017513 89 TPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFS--M-QAIDHIINSAAKSNYMSSGQISVPIVFRGP-NG--AAAGVGAQ 161 (370)
Q Consensus 89 ~GIaE~~~v~~A~GlA~~G~rp-~~~t~~~~f~--~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G--~~~~~G~t 161 (370)
+|-.=-+++|.|.++-+.|-.. ++.+++.+.. + --++-+ |-++ .+++||||++- .+ .+.+---+
T Consensus 138 Vg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEal-N~A~--------v~klPvvf~ieNN~yAiSvp~~~q 208 (358)
T COG1071 138 VGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEAL-NFAA--------VWKLPVVFVIENNQYAISVPRSRQ 208 (358)
T ss_pred ecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHH-HHHH--------HhcCCEEEEEecCCceeecchhhc
Confidence 3333345666666666668444 5555554543 2 123332 3334 47999999983 33 33221111
Q ss_pred chHHHH---HHHccCCCcEEEeeCCHHHHHHHHHHHHhC----CCCEEEEe
Q 017513 162 HSHCYA---AWYASVPGLKVLSPYSSEDARGLLKAAIRD----PDPVVFLE 205 (370)
Q Consensus 162 Hs~~~~---a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~----~~Pv~i~~ 205 (370)
+..... +.--.||++.| .=.|...++...++|.++ .+|++|-.
T Consensus 209 ~~~~~~~~ra~aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLIE~ 258 (358)
T COG1071 209 TAAEIIAARAAAYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLIEA 258 (358)
T ss_pred ccchhHHhhhhccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 111111 34457999988 899999999999988863 58999953
No 167
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=78.78 E-value=29 Score=32.36 Aligned_cols=98 Identities=14% Similarity=0.121 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcc------CCeeEEEcccchHH-H--HHHHHHHHHhhhccccCCCCcccC-EEEEeC-CCCCCCCCCcc-
Q 017513 95 GFTGIGVGAAYY------GLKPVVEFMTFNFS-M--QAIDHIINSAAKSNYMSSGQISVP-IVFRGP-NGAAAGVGAQH- 162 (370)
Q Consensus 95 ~~v~~A~GlA~~------G~rp~~~t~~~~f~-~--ra~dqi~~~~a~~~~~~~g~~~~p-vv~~~~-~G~~~~~G~tH- 162 (370)
..+++|.|+|++ ..+.++ +.. +.. + ..++.+. .++ ..++| ++++.. .+.. -.+.++
T Consensus 109 ~gl~~avG~Ala~~~~~~~~~v~~-i~G-DG~~~~G~~~eal~-~a~--------~~~l~~li~vvdnN~~~-~~~~~~~ 176 (255)
T cd02012 109 QGLSVAVGMALAEKLLGFDYRVYV-LLG-DGELQEGSVWEAAS-FAG--------HYKLDNLIAIVDSNRIQ-IDGPTDD 176 (255)
T ss_pred hHHHHHHHHHHHHHHhCCCCEEEE-EEC-cccccccHHHHHHH-HHH--------HcCCCcEEEEEECCCcc-ccCcHhh
Confidence 345667777665 344444 333 332 2 2456554 233 25676 555543 3332 223322
Q ss_pred --hHHH-HHHHccCCCcEEEeeC--CHHHHHHHHHHHHhC-CCCEEEEe
Q 017513 163 --SHCY-AAWYASVPGLKVLSPY--SSEDARGLLKAAIRD-PDPVVFLE 205 (370)
Q Consensus 163 --s~~~-~a~~~~iP~~~V~~P~--d~~e~~~~l~~a~~~-~~Pv~i~~ 205 (370)
...+ ..+++++ |+.++.-. |..++...+..+.+. ++|++|..
T Consensus 177 ~~~~~~~~~~~~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~ 224 (255)
T cd02012 177 ILFTEDLAKKFEAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIA 224 (255)
T ss_pred ccCchhHHHHHHHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEE
Confidence 1222 3566665 78888777 999999999999886 78998854
No 168
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=78.77 E-value=72 Score=31.62 Aligned_cols=112 Identities=17% Similarity=0.071 Sum_probs=63.7
Q ss_pred CCcEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCccc-CEEEEe-CCCCCC--C
Q 017513 83 PERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRG-PNGAAA--G 157 (370)
Q Consensus 83 p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~-pvv~~~-~~G~~~--~ 157 (370)
|.+|+.+| +=-+...+|.|+|++ .-+++++... +...-.--+-...++ ..+. |++++. ..|..+ +
T Consensus 214 ~~~f~~~G-sMG~a~p~AlG~ala~p~r~Vv~i~G-DGsflm~~~eL~t~~--------~~~~~nli~VVlNNg~~~~~g 283 (361)
T TIGR03297 214 ARDFLTVG-SMGHASQIALGLALARPDQRVVCLDG-DGAALMHMGGLATIG--------TQGPANLIHVLFNNGAHDSVG 283 (361)
T ss_pred CCceEeec-hhhhHHHHHHHHHHHCCCCCEEEEEC-hHHHHHHHHHHHHHH--------HhCCCCeEEEEEcCccccccC
Confidence 67788765 233455788888876 3366666654 443211112122333 2343 565544 333211 1
Q ss_pred CCCcc--hHHHHHHHccCCCc-EEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 158 VGAQH--SHCYAAWYASVPGL-KVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 158 ~G~tH--s~~~~a~~~~iP~~-~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
.-.++ ..++..+.++. |+ ..+...+..|+..+++++.+.++|++|-.
T Consensus 284 ~q~~~~~~~d~~~iA~a~-G~~~~~~v~~~~eL~~al~~a~~~~gp~lIeV 333 (361)
T TIGR03297 284 GQPTVSQHLDFAQIAKAC-GYAKVYEVSTLEELETALTAASSANGPRLIEV 333 (361)
T ss_pred CcCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 11222 22334555554 43 46788999999999999998899998753
No 169
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=78.40 E-value=6.3 Score=34.25 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=43.1
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEec
Q 017513 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe 298 (370)
++||+-|..-....++++.|++.|+.+=.|-+ ...|.+.|...+.+-++++++++
T Consensus 110 ~vviTdG~s~d~~~~~a~~lr~~gv~i~~vG~---~~~~~~eL~~ias~p~~vf~v~~ 164 (165)
T cd01481 110 LVLITGGKSQDDVERPAVALKRAGIVPFAIGA---RNADLAELQQIAFDPSFVFQVSD 164 (165)
T ss_pred EEEEeCCCCcchHHHHHHHHHHCCcEEEEEeC---CcCCHHHHHHHhCCCccEEEecC
Confidence 55677776667788899999999987766654 35799999988877788888875
No 170
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=78.24 E-value=13 Score=39.22 Aligned_cols=112 Identities=16% Similarity=0.152 Sum_probs=65.4
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC--
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA-- 156 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~-- 156 (370)
|.+|++.+- +=-..++.|.|++++. -++++.... +.....--|-...+. ..++|++++. ..|..+
T Consensus 409 p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i~G-DGsf~m~~~eL~Ta~--------~~~lpv~~vV~NN~~~g~~ 479 (586)
T PRK06276 409 PRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAITG-DGGFLMNSQELATIA--------EYDIPVVICIFDNRTLGMV 479 (586)
T ss_pred CCeEEcCCCccccccchhHHHhhhhhcCCCcEEEEEc-chHhhccHHHHHHHH--------HhCCCeEEEEEeCCchHHH
Confidence 789998642 3344677888888873 345555544 333211112223344 3677877765 333211
Q ss_pred --------C---CCCcc-h-HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 157 --------G---VGAQH-S-HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 157 --------~---~G~tH-s-~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
+ .+..+ . .++.++...+ |..-..-.+++|+...++.+++.++|.+|-
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIe 539 (586)
T PRK06276 480 YQWQNLYYGKRQSEVHLGETPDFVKLAESY-GVKADRVEKPDEIKEALKEAIKSGEPYLLD 539 (586)
T ss_pred HHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 11111 1 1233455554 667778899999999999999888999884
No 171
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=78.08 E-value=5.4 Score=31.55 Aligned_cols=71 Identities=20% Similarity=0.131 Sum_probs=46.1
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc-CCeEEEEecCCCCCChHHHHH
Q 017513 238 GKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVGAEIC 310 (370)
Q Consensus 238 g~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~-~~~vvvvEe~~~~GGlg~~i~ 310 (370)
..+++|++.| +....+.+|.+.|++.|++...+|+..- |-..+.+.+.-.. +=+.|+++.. ..||+.+...
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi~g~-~iGG~ddl~~ 86 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYVKGE-FVGGCDIIME 86 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEECCE-EEeChHHHHH
Confidence 4679999988 5778888999999999999999998531 1111122222111 2245677754 4688876443
No 172
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=76.84 E-value=46 Score=31.05 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=43.3
Q ss_pred EEEEEec-hhHHHHHHHHHHH-HhcCCceeEEEeccccCCCHHH-----HHHHHhcCCeEEEEecCCCCCChHHHHHHH
Q 017513 241 VTITAFS-KIVGLSLKAAEIL-AKEGISAEVINLRSIRPLDRST-----INASVRKTNRLVTVEEGFPQHGVGAEICAS 312 (370)
Q Consensus 241 v~Iia~G-~~~~~al~Aa~~L-~~~Gi~v~Vi~~~~l~P~d~~~-----i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~ 312 (370)
=+|+++| +...+..+|++.+ +..+.++.++++.+-+|-+.+. |...-++++..|-.-+|+. |+...++..
T Consensus 115 PvIlSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~SDHt~--g~~~~~~Av 191 (241)
T PF03102_consen 115 PVILSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGYSDHTD--GIEAPIAAV 191 (241)
T ss_dssp -EEEE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEEEE-SS--SSHHHHHHH
T ss_pred cEEEECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEeCCCCC--CcHHHHHHH
Confidence 4688998 7778899999999 5557899999999999988874 3333335677778888986 444444433
No 173
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=76.69 E-value=31 Score=36.23 Aligned_cols=111 Identities=13% Similarity=0.036 Sum_probs=64.0
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC-
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA- 155 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~- 155 (370)
|.+|++.|- +=-..+..|.|++++- -|++++... ..|.+.+ |-...+. +.++|++++. . +|..
T Consensus 413 p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~--~eL~Ta~--------r~~lpv~ivV~NN~~y~~ 482 (574)
T PRK06466 413 PNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMNI--QELSTCL--------QYGLPVKIINLNNGALGM 482 (574)
T ss_pred CCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEEEcchhhhccH--HHHHHHH--------HhCCCeEEEEEeCCccHH
Confidence 788887642 1223466688888763 466666654 2233222 2222333 4678887775 2 3321
Q ss_pred ---------CC--CCCc--chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-CCCEEEE
Q 017513 156 ---------AG--VGAQ--HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFL 204 (370)
Q Consensus 156 ---------~~--~G~t--Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~i~ 204 (370)
.+ .+.. +..++.++-+++ |..-....+.+|+...++++++. ++|.+|-
T Consensus 483 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~p~lIe 544 (574)
T PRK06466 483 VRQWQDMQYEGRHSHSYMESLPDFVKLAEAY-GHVGIRITDLKDLKPKLEEAFAMKDRLVFID 544 (574)
T ss_pred HHHHHHHhcCCceeecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 00 0110 111223344444 66778889999999999999986 8999884
No 174
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=75.93 E-value=27 Score=36.89 Aligned_cols=112 Identities=15% Similarity=0.104 Sum_probs=67.0
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.+|+..+- +=-..+..|.|++++. -|+++++.. ..|.+.+.| ...+. +.++|++++. ..|..+
T Consensus 420 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~~E--L~Ta~--------r~~lpvi~vV~NN~~y~~ 489 (595)
T PRK09107 420 PNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQE--MSTAV--------QYNLPVKIFILNNQYMGM 489 (595)
T ss_pred CCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhccHHH--HHHHH--------HhCCCeEEEEEeCCccHH
Confidence 789997542 2224567777777774 467776655 223333222 23444 4678887775 333211
Q ss_pred ---------CC--CCcc---hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 157 ---------GV--GAQH---SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 157 ---------~~--G~tH---s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
+. ...+ ..++..+-+.+ |..-+.-.++.|+...++.++..++|.+|-.
T Consensus 490 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lIeV 551 (595)
T PRK09107 490 VRQWQQLLHGNRLSHSYTEAMPDFVKLAEAY-GAVGIRCEKPGDLDDAIQEMIDVDKPVIFDC 551 (595)
T ss_pred HHHHHHHHhCCccccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence 10 1111 11223444454 6777788999999999999999999999854
No 175
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=75.92 E-value=11 Score=36.51 Aligned_cols=65 Identities=15% Similarity=0.097 Sum_probs=50.5
Q ss_pred EEEEEec-hhHHHHHHHHHHHHhcCCc-eeEEEeccccCCCHHH-----HHHHHhcCCeEEEEecCCCCCChH
Q 017513 241 VTITAFS-KIVGLSLKAAEILAKEGIS-AEVINLRSIRPLDRST-----INASVRKTNRLVTVEEGFPQHGVG 306 (370)
Q Consensus 241 v~Iia~G-~~~~~al~Aa~~L~~~Gi~-v~Vi~~~~l~P~d~~~-----i~~~~~~~~~vvvvEe~~~~GGlg 306 (370)
=+|+++| +...+..+|.+.++++|.. +.++++.+.+|-+.+. +.+...+.+..|=+-+|+. |-+.
T Consensus 149 PiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGlSDHT~-g~~a 220 (347)
T COG2089 149 PIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGLSDHTL-GILA 220 (347)
T ss_pred CEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCccccccCcc-chhH
Confidence 5688999 6678899999999999775 8999999999998885 3344445677788889985 5333
No 176
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=75.44 E-value=40 Score=40.31 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=66.2
Q ss_pred cEeechhhHHHHHHHHHHHhccCCeeEE--EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCC
Q 017513 85 RVLDTPITEAGFTGIGVGAAYYGLKPVV--EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~G~rp~~--~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~ 160 (370)
|++ ....|+++.-||-|.|+.-.+|-+ .|.. ......+.-+.+.. ..++||+++..+.+.. +.|.
T Consensus 341 ~~i-~~rhErsAafmAdGyAR~TgkpgV~i~TsG-PG~tN~l~av~eA~---------~d~vPlLvItgd~p~~~~~~ga 409 (1655)
T PLN02980 341 TCI-ACFDERSLAFHALGYARGSLKPAVVITSSG-TAVSNLLPAVVEAS---------QDFVPLLLLTADRPPELQDAGA 409 (1655)
T ss_pred eEE-eccCcchHHHHHHHHHHHhCCCEEEEEeCc-HHHHHHHHHHHHHh---------hcCCCEEEEeCCCCHHHhcCCC
Confidence 455 456999999999999999555544 3433 44555666665432 3689999986433322 2233
Q ss_pred cchHHHHHHHccCCCcEEE--eeCCH-------HHHHHHHHHHHhC-CCCEEEEec
Q 017513 161 QHSHCYAAWYASVPGLKVL--SPYSS-------EDARGLLKAAIRD-PDPVVFLEN 206 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~--~P~d~-------~e~~~~l~~a~~~-~~Pv~i~~~ 206 (370)
.+..+-.++++.+-.+..- .|.+. ..+..+++.|... ++||+|-.|
T Consensus 410 ~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 410 NQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred CcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 3322224788876655444 34441 3344455555544 599999876
No 177
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=74.92 E-value=12 Score=37.26 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=57.9
Q ss_pred EEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcC---CeEEEEecCCCCCChH--H
Q 017513 233 KIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT---NRLVTVEEGFPQHGVG--A 307 (370)
Q Consensus 233 ~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~---~~vvvvEe~~~~GGlg--~ 307 (370)
..+.+|.+++++..|..-+.--+.++ ..|.++.+++..+=.|+|.+.+.+.+++. +.|.++...+.+|=+. .
T Consensus 75 sl~~pgdkVLv~~nG~FG~R~~~ia~---~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~ 151 (383)
T COG0075 75 SLVEPGDKVLVVVNGKFGERFAEIAE---RYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLK 151 (383)
T ss_pred hccCCCCeEEEEeCChHHHHHHHHHH---HhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHH
Confidence 34567889999999998887655554 45999999999999999999999999854 3455555545444322 3
Q ss_pred HHHHHHHhh
Q 017513 308 EICASVIEE 316 (370)
Q Consensus 308 ~i~~~l~~~ 316 (370)
+|+..+.++
T Consensus 152 ~I~~~~k~~ 160 (383)
T COG0075 152 EIAKAAKEH 160 (383)
T ss_pred HHHHHHHHc
Confidence 455555544
No 178
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=74.77 E-value=4.9 Score=32.42 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~ 291 (370)
.....+.+|.+.|+++|+++..+|+.. .|++.+.|.+.++..+
T Consensus 4 ~~C~t~rka~~~L~~~gi~~~~~d~~k-~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 4 PNCSTCRKALKWLEENGIEYEFIDYKK-EPLSREELRELLSKLG 46 (110)
T ss_dssp TT-HHHHHHHHHHHHTT--EEEEETTT-S---HHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCeEeehhhh-CCCCHHHHHHHHHHhc
Confidence 345678889999999999999999885 7899999888777554
No 179
>PLN02470 acetolactate synthase
Probab=74.20 E-value=31 Score=36.34 Aligned_cols=112 Identities=14% Similarity=0.084 Sum_probs=64.4
Q ss_pred CCcEeech--hhHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDTP--ITEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~G--IaE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.+|+..+ =+=-..+..|.|++++. -|+++++.. ..|.+.+ |-...+. ..++|++++. ..+..+
T Consensus 416 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~--~eL~Ta~--------~~~l~v~ivV~NN~~yg~ 485 (585)
T PLN02470 416 PRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMNI--QELATIH--------VENLPVKIMVLNNQHLGM 485 (585)
T ss_pred CCeEEcCCccccccchHHHHHHHHHhCCCCcEEEEEccchhhccH--HHHHHHH--------HhCCCeEEEEEeCCcchH
Confidence 78888642 12223677788877774 356666544 2233222 2223343 3678877765 333211
Q ss_pred ---------C---CCCc---------chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 157 ---------G---VGAQ---------HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 157 ---------~---~G~t---------Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
+ .+.. +..++.++-+++ |..-..-.++.|+...++.+++.++|++|-.
T Consensus 486 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lieV 554 (585)
T PLN02470 486 VVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGC-KIPAARVTRKSDLREAIQKMLDTPGPYLLDV 554 (585)
T ss_pred HHHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence 0 0000 002233444444 6677788999999999999999899998843
No 180
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=73.30 E-value=23 Score=37.10 Aligned_cols=111 Identities=15% Similarity=0.083 Sum_probs=65.6
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.+|+..+- +=-..++.|.|++++. -++++++.. ..|++-..| + ..+. +.++|++++. ..|..+
T Consensus 404 ~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~GDG~f~m~~~e-L-~Ta~--------~~~lpvi~vV~NN~~~~~ 473 (563)
T PRK08527 404 PRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINFTGDGSILMNIQE-L-MTAV--------EYKIPVINIILNNNFLGM 473 (563)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEecCchhcccHHH-H-HHHH--------HhCCCeEEEEEECCcchh
Confidence 788887542 2233667888888774 355655544 233333322 2 3344 3678887765 233111
Q ss_pred ---------C---CCCcc--hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 157 ---------G---VGAQH--SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 157 ---------~---~G~tH--s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
+ .+..+ ..++..+-+++ |..-+.-.+++|+...+++++..++|++|-
T Consensus 474 i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 534 (563)
T PRK08527 474 VRQWQTFFYEERYSETDLSTQPDFVKLAESF-GGIGFRVTTKEEFDKALKEALESDKVALID 534 (563)
T ss_pred HHHHHHhhcCCceeeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 01111 11223455554 566778899999999999999989999984
No 181
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=73.25 E-value=31 Score=36.41 Aligned_cols=112 Identities=14% Similarity=0.030 Sum_probs=67.1
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.+|++.+- +=-..+..|.|++++- -|+++++.. ..|.+-+ |-...+. +.++|++++. ..+..+
T Consensus 427 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDGsf~m~~--~eL~Ta~--------r~~lpviivV~NN~~~~~ 496 (587)
T PRK06965 427 PRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGEGSIQMCI--QELSTCL--------QYDTPVKIISLNNRYLGM 496 (587)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhcCH--HHHHHHH--------HcCCCeEEEEEECCcchH
Confidence 789997643 4455677888888883 356666654 2233222 2223344 4678887775 333211
Q ss_pred --------CCCCc------chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-CCCEEEEe
Q 017513 157 --------GVGAQ------HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFLE 205 (370)
Q Consensus 157 --------~~G~t------Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~i~~ 205 (370)
..+.. +..++..+-+++ |+.-+.-.+.+|+...++.|++. ++|++|-.
T Consensus 497 i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lieV 559 (587)
T PRK06965 497 VRQWQEIEYSKRYSHSYMDALPDFVKLAEAY-GHVGMRIEKTSDVEPALREALRLKDRTVFLDF 559 (587)
T ss_pred HHHHHHHhcCCCccccCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 01111 111222344444 67788889999999999999984 78998843
No 182
>PRK06154 hypothetical protein; Provisional
Probab=73.19 E-value=40 Score=35.45 Aligned_cols=111 Identities=19% Similarity=0.080 Sum_probs=64.7
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEcccchHH-HHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCCC
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG 157 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~~~f~-~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~~ 157 (370)
|.+|+..+- +=-..+..|.|++++- -|++++... +.. +... |=...+. +.++|++++. ..+..+.
T Consensus 421 p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~G-DG~f~m~~-~EL~Ta~--------r~~lpi~~vV~NN~~yg~ 490 (565)
T PRK06154 421 PGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWG-DAAFGMTG-MDFETAV--------RERIPILTILLNNFSMGG 490 (565)
T ss_pred CCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEc-chHHhccH-HHHHHHH--------HhCCCeEEEEEECCccce
Confidence 789997542 1223566777777773 467766655 332 2222 2223444 4688887776 3332210
Q ss_pred --------C----CCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh---CCCCEEEE
Q 017513 158 --------V----GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR---DPDPVVFL 204 (370)
Q Consensus 158 --------~----G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~---~~~Pv~i~ 204 (370)
. +..+..++.++-.++ |..-+.-.+++|+...++.+++ .++|++|-
T Consensus 491 ~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~g~~V~~~~el~~al~~a~~~~~~~~p~lIe 551 (565)
T PRK06154 491 YDKVMPVSTTKYRATDISGDYAAIARAL-GGYGERVEDPEMLVPALLRALRKVKEGTPALLE 551 (565)
T ss_pred eehhhhhhcCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhccCCCeEEEE
Confidence 0 011112223444444 6777778899999999999996 57899884
No 183
>PRK08266 hypothetical protein; Provisional
Probab=73.08 E-value=23 Score=36.86 Aligned_cols=111 Identities=21% Similarity=0.205 Sum_probs=64.6
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCCC
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAAA 156 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~~ 156 (370)
|.+|+..|. +=-..+..|.|++++. -++++.... ..|.+. ...+ ..+. ..++|++++. . +|...
T Consensus 392 ~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v~GDG~f~~~-~~eL-~ta~--------~~~lpv~ivv~NN~~y~~ 461 (542)
T PRK08266 392 PRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMFG-VQEL-ATAV--------QHNIGVVTVVFNNNAYGN 461 (542)
T ss_pred CCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchhhhcc-HHHH-HHHH--------HhCCCeEEEEEeCCcchH
Confidence 788887753 1122446788888774 355555544 223322 2223 2333 3678887765 2 33210
Q ss_pred --------CCC----Cc-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 157 --------GVG----AQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 157 --------~~G----~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
.++ .. |..++..+.+++ |.....-.+.+|+...+.++++.++|++|-
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 521 (542)
T PRK08266 462 VRRDQKRRFGGRVVASDLVNPDFVKLAESF-GVAAFRVDSPEELRAALEAALAHGGPVLIE 521 (542)
T ss_pred HHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCcEEEE
Confidence 011 11 212233444554 777888899999999999999888999874
No 184
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=72.18 E-value=17 Score=29.72 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=38.7
Q ss_pred CcEEEEEec--h-hHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHH-HhcCCeEEEEecCC
Q 017513 239 KDVTITAFS--K-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINAS-VRKTNRLVTVEEGF 300 (370)
Q Consensus 239 ~dv~Iia~G--~-~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~-~~~~~~vvvvEe~~ 300 (370)
.++.|++.+ . ....+++.++.|+++|+++.+-+ . +.+... ++.+ -.+...++++.+..
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~-~--~sl~kq-lk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDD-S--GSIGRR-YARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeC-C--CCHHHH-HHHhHhcCCCEEEEECcCc
Confidence 468888888 4 45678888999999999998843 2 555444 4333 23445677777653
No 185
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=71.83 E-value=24 Score=36.44 Aligned_cols=138 Identities=15% Similarity=0.183 Sum_probs=82.9
Q ss_pred CCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhh
Q 017513 55 PKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAK 133 (370)
Q Consensus 55 ~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~ 133 (370)
+.++.+-.|-. +.+++.+.+.- -=|++.+- .|-|+.-+|=|.|+. |+-.++.||+ ..-.-|++-|--+ |
T Consensus 20 ~~iFGVPGDyN-----L~lLD~i~~~~-~lrWvGn~-NELNaaYAADGYaR~~Gi~alvTTfG-VGELSA~NGIAGS--Y 89 (557)
T COG3961 20 KSIFGVPGDYN-----LSLLDKIYSVP-GLRWVGNA-NELNAAYAADGYARLNGISALVTTFG-VGELSALNGIAGS--Y 89 (557)
T ss_pred ceeeeCCCccc-----HHHHHHhhcCC-Cceeeccc-chhhhhhhhcchhhhcCceEEEEecc-cchhhhhcccchh--h
Confidence 34666655532 22344443331 24666554 799999999999987 8888888875 5556677765433 3
Q ss_pred ccccCCCCcccCEEEEe--CCCCCCCCC--Ccch---HHHHHHHccCCC----cEEEeeCC--HHHHHHHHHHHHhCCCC
Q 017513 134 SNYMSSGQISVPIVFRG--PNGAAAGVG--AQHS---HCYAAWYASVPG----LKVLSPYS--SEDARGLLKAAIRDPDP 200 (370)
Q Consensus 134 ~~~~~~g~~~~pvv~~~--~~G~~~~~G--~tHs---~~~~a~~~~iP~----~~V~~P~d--~~e~~~~l~~a~~~~~P 200 (370)
-.++||+.+. +.-....-| -||+ +++.-+++.--. -..+.+.+ +.|..++++.++..++|
T Consensus 90 -------AE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~~RP 162 (557)
T COG3961 90 -------AEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQRRP 162 (557)
T ss_pred -------hhcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHhcCC
Confidence 2789999885 211111111 2342 222222222111 12344444 78999999999999999
Q ss_pred EEEEecccc
Q 017513 201 VVFLENELL 209 (370)
Q Consensus 201 v~i~~~~~l 209 (370)
+||..|...
T Consensus 163 vYI~lP~dv 171 (557)
T COG3961 163 VYIGLPADV 171 (557)
T ss_pred eEEEcchHH
Confidence 999877543
No 186
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=71.75 E-value=11 Score=31.50 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=36.7
Q ss_pred ec-hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcC
Q 017513 246 FS-KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT 290 (370)
Q Consensus 246 ~G-~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~ 290 (370)
|| .....+.+|.+.|+++|+..+++|+.. .|++.+.|.+.+++.
T Consensus 6 Y~~p~Cst~RKA~~~L~~~gi~~~~~d~~~-~p~t~~eL~~~l~~~ 50 (126)
T TIGR01616 6 YEKPGCANNARQKAALKASGHDVEVQDILK-EPWHADTLRPYFGNK 50 (126)
T ss_pred EeCCCCHHHHHHHHHHHHCCCCcEEEeccC-CCcCHHHHHHHHHHc
Confidence 44 456778889999999999999999886 799999888877754
No 187
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=70.84 E-value=17 Score=38.07 Aligned_cols=98 Identities=20% Similarity=0.285 Sum_probs=56.1
Q ss_pred HHHHHHHHhccCCeeEEEcccchHHHH-HHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC--C-C------------
Q 017513 96 FTGIGVGAAYYGLKPVVEFMTFNFSMQ-AIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA--G-V------------ 158 (370)
Q Consensus 96 ~v~~A~GlA~~G~rp~~~t~~~~f~~r-a~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~--~-~------------ 158 (370)
.++.|.|++++.-+++++... +.... ....+ ..+. +.++|++++. ..|..+ . .
T Consensus 430 ~lpaaiGaala~~~~vv~i~G-DGsf~~~~~eL-~Ta~--------r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~~~~ 499 (568)
T PRK07449 430 LLSTAAGVARASAKPTVALIG-DLSFLHDLNGL-LLLK--------QVPAPLTIVVVNNNGGGIFSLLPQPEEEPVFERF 499 (568)
T ss_pred HHHHHHHHHhcCCCCEEEEec-hHHhhcCcHHH-Hhhc--------ccCCCeEEEEEECCCCccccCCCCCCCcchhhHh
Confidence 578888888874566666654 44322 11111 1222 4678877765 333211 0 0
Q ss_pred -CCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 159 -GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 159 -G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
+..+..++.++-..+ |..-+...+++|+...++++++.++|++|-
T Consensus 500 ~~~~~~~df~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~p~lIe 545 (568)
T PRK07449 500 FGTPHGVDFAHAAAMY-GLEYHRPETWAELEEALADALPTPGLTVIE 545 (568)
T ss_pred hcCCCCCCHHHHHHHc-CCCccCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 001111222233332 455567799999999999999889999984
No 188
>PF04609 MCR_C: Methyl-coenzyme M reductase operon protein C; InterPro: IPR007687 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein C.; GO: 0003824 catalytic activity, 0015948 methanogenesis
Probab=70.61 E-value=44 Score=31.36 Aligned_cols=90 Identities=19% Similarity=0.189 Sum_probs=60.9
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhcCCceeEEEec-----cccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHH
Q 017513 238 GKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLR-----SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAE 308 (370)
Q Consensus 238 g~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~Vi~~~-----~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~ 308 (370)
|.|+++||.. ...+.+++.++.||+.|++.+++-+. .+.-+..+.. +.+.+++-.|+ | .|++-+.
T Consensus 70 g~eV~vVamS~gr~Hl~~pvCdIt~~LRr~G~~tn~i~L~~G~G~~~~gl~~~E~-~~I~~Hd~AV~---~--~Gn~~~~ 143 (268)
T PF04609_consen 70 GTEVAVVAMSPGRRHLPKPVCDITEYLRRAGAKTNMIGLARGSGGRIFGLTPKEI-EQINEHDLAVF---H--LGNFKSC 143 (268)
T ss_pred CCcEEEEeCCcccccCCCcHHHHHHHHHHcCCccceEEEeccCCCCccCCCHHHH-HHHhhcCEEEE---E--eCCHHHH
Confidence 6889999887 45677999999999999999988764 3444555555 45777764443 2 4788888
Q ss_pred HHHHHHhhccCCCCCCEEEEecCCCC
Q 017513 309 ICASVIEESFGYLDAPVERIAGADVP 334 (370)
Q Consensus 309 i~~~l~~~~~~~l~~~~~~ig~~d~~ 334 (370)
|...... -+.+.+.|+.-.+.+..+
T Consensus 144 I~~K~~~-ll~~i~iPiVv~~~P~d~ 168 (268)
T PF04609_consen 144 IIYKKRH-LLRGIDIPIVVCGGPVDF 168 (268)
T ss_pred HHHHHHH-HHhhcCCcEEEecCCccc
Confidence 8763322 112346677777776433
No 189
>PRK05858 hypothetical protein; Provisional
Probab=69.91 E-value=29 Score=36.13 Aligned_cols=112 Identities=15% Similarity=0.047 Sum_probs=64.4
Q ss_pred CCcEeechh--hHHHHHHHHHHHhcc-CCeeEEEcccchHH-HHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCCC
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYY-GLKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG 157 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~-G~rp~~~t~~~~f~-~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~~ 157 (370)
|.+|++.+. +=-..++.|.|++++ .-|++++... +.. +.....+ ..+. ..++|++++. ..+..+-
T Consensus 397 p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i~G-DG~f~~~~~eL-~Ta~--------~~~lpi~ivV~NN~~y~~ 466 (542)
T PRK05858 397 PGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLLQG-DGAFGFSLMDV-DTLV--------RHNLPVVSVIGNNGIWGL 466 (542)
T ss_pred CCCEEeCCCccccccchhHHHHHHHhCCCCcEEEEEc-CchhcCcHHHH-HHHH--------HcCCCEEEEEEeCCchhh
Confidence 788988753 222345566666665 2366666644 332 2222222 2333 3678887775 3332210
Q ss_pred --------CCC-----c-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 158 --------VGA-----Q-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 158 --------~G~-----t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
.|. . +..++..+-+.+ |..-....+++|+...++.+++.++|++|-.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIev 527 (542)
T PRK05858 467 EKHPMEALYGYDVAADLRPGTRYDEVVRAL-GGHGELVTVPAELGPALERAFASGVPYLVNV 527 (542)
T ss_pred HHHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 010 0 111222333443 5678889999999999999999999999853
No 190
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=69.59 E-value=18 Score=26.78 Aligned_cols=56 Identities=27% Similarity=0.301 Sum_probs=35.1
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHh-cCCeEEEEec
Q 017513 240 DVTITAFSK-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEE 298 (370)
Q Consensus 240 dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~-~~~~vvvvEe 298 (370)
++.|++.+. ....|++.+..|+++|+++.+.... +.+ .+.+..+-. +...++++.+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~-~~~~~~a~~~~~~~~i~i~~ 60 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKL-KKQFKYADRSGARFAVILGE 60 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCH-HHHHHHHHHcCCCEEEEEcH
Confidence 678888775 4567899999999999988774422 233 333433322 2345566654
No 191
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=69.57 E-value=13 Score=31.30 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=44.8
Q ss_pred chhHHHHHHHHHHHHhcCCceeEEEeccc-cCC-------------CHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHH
Q 017513 247 SKIVGLSLKAAEILAKEGISAEVINLRSI-RPL-------------DRSTINASVRKTNRLVTVEEGFPQHGVGAEICAS 312 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l-~P~-------------d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~ 312 (370)
|+....+..+++.|++.|+++++||++.. .|+ +.+.+.+.+.+.+.+|++=-- ..|++...+..+
T Consensus 14 ~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~-y~~~~s~~lK~~ 92 (152)
T PF03358_consen 14 SNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPV-YNGSVSGQLKNF 92 (152)
T ss_dssp SHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEE-BTTBE-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecE-EcCcCChhhhHH
Confidence 45566677778888888999999999986 222 123456667777776554433 358888877766
Q ss_pred HH
Q 017513 313 VI 314 (370)
Q Consensus 313 l~ 314 (370)
+.
T Consensus 93 lD 94 (152)
T PF03358_consen 93 LD 94 (152)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 192
>PRK10853 putative reductase; Provisional
Probab=69.53 E-value=11 Score=31.00 Aligned_cols=43 Identities=21% Similarity=0.212 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~ 291 (370)
.....+.+|.+-|+++|+..+++|+.. .|++.+.|.+.+.+.+
T Consensus 8 ~~C~t~rkA~~~L~~~~i~~~~~d~~k-~p~s~~eL~~~l~~~g 50 (118)
T PRK10853 8 KNCDTIKKARRWLEAQGIDYRFHDYRV-DGLDSELLQGFIDELG 50 (118)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEeehcc-CCcCHHHHHHHHHHcC
Confidence 445678888889999999999999886 8999999988887543
No 193
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=69.53 E-value=53 Score=34.74 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=30.0
Q ss_pred HHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 168 AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 168 a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
++-+++ |+.-+.-.+..|+...++.+++.++|++|-
T Consensus 507 ~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 542 (597)
T PRK08273 507 RFAELL-GLKGIRVDDPEQLGAAWDEALAADRPVVLE 542 (597)
T ss_pred HHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 444454 677888899999999999999999999984
No 194
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=68.98 E-value=52 Score=34.57 Aligned_cols=111 Identities=23% Similarity=0.217 Sum_probs=62.5
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.+|+..+- +=-..++.|.|++++. -++++++.. ..|.+-+ |-...+. +.++|++++. ..+..+
T Consensus 420 p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG~f~m~~--~eL~Tav--------r~~lpvi~vV~NN~~yg~ 489 (579)
T TIGR03457 420 PRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMSM--NEIMTAV--------RHDIPVTAVVFRNRQWGA 489 (579)
T ss_pred CCeEEcCCccccccchHHHHHhhhhhCCCCcEEEEEcchHHhccH--HHHHHHH--------HhCCCeEEEEEECcchHH
Confidence 789997532 1112444777777774 366666644 2233322 3233444 4678887765 233211
Q ss_pred ---------C---CCC-cchH-HHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh---CCCCEEEE
Q 017513 157 ---------G---VGA-QHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR---DPDPVVFL 204 (370)
Q Consensus 157 ---------~---~G~-tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~---~~~Pv~i~ 204 (370)
+ .+. .+.. ++..+-+.+ |..-..-.+++|+...++.+++ .++|++|-
T Consensus 490 i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~g~~v~~~~el~~al~~a~~~~~~~~p~lie 553 (579)
T TIGR03457 490 EKKNQVDFYNNRFVGTELESELSFAGIADAM-GAKGVVVDKPEDVGPALKKAIAAQAEGKTTVIE 553 (579)
T ss_pred HHHHHHHhhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhCCCCCcEEEE
Confidence 0 011 1111 223344444 5666777999999999999987 46899884
No 195
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=68.80 E-value=46 Score=29.31 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=60.6
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC-
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA- 155 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~- 155 (370)
|.+|+..+- +=-..++.|.|++++- -++++.... ..|.+-..| +. .++ ..++|++++. . ++..
T Consensus 40 ~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~f~~~~~e-l~-ta~--------~~~~p~~ivV~nN~~~~~ 109 (183)
T cd02005 40 GTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSFQMTVQE-LS-TMI--------RYGLNPIIFLINNDGYTI 109 (183)
T ss_pred CCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCchhhccHHH-HH-HHH--------HhCCCCEEEEEECCCcEE
Confidence 678887521 1223456677776653 355555543 233332222 32 333 3567766664 2 3321
Q ss_pred -C---CCCCcc----hHHHHHHHccC---CCcEEEeeCCHHHHHHHHHHHHh-CCCCEEEE
Q 017513 156 -A---GVGAQH----SHCYAAWYASV---PGLKVLSPYSSEDARGLLKAAIR-DPDPVVFL 204 (370)
Q Consensus 156 -~---~~G~tH----s~~~~a~~~~i---P~~~V~~P~d~~e~~~~l~~a~~-~~~Pv~i~ 204 (370)
. +.+..+ ..++..+.... +++......++.|+...++++++ .++|++|-
T Consensus 110 ~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~~p~lie 170 (183)
T cd02005 110 ERAIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEALKDALFNRDKLSLIE 170 (183)
T ss_pred EEEeccCCcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHHHHHHHhcCCCcEEEE
Confidence 0 111111 11223344433 23667778999999999999998 78999884
No 196
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=68.66 E-value=83 Score=32.76 Aligned_cols=112 Identities=11% Similarity=0.011 Sum_probs=60.9
Q ss_pred CCcEeechhhHHH----HHHHHHHHhccC-CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC
Q 017513 83 PERVLDTPITEAG----FTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA 155 (370)
Q Consensus 83 p~r~~~~GIaE~~----~v~~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~ 155 (370)
|.+|+..+ -.. .+..|.|++++. -|+++++.. +......-|-...+. ..++|++++. . .+..
T Consensus 394 ~~~~~~~~--~~g~mG~glpaaiGa~la~p~~~vv~i~G-DG~f~m~~~EL~Ta~--------~~~lpi~~vV~NN~~y~ 462 (539)
T TIGR03393 394 DVNFIVQP--LWGSIGYTLPAAFGAQTACPNRRVILLIG-DGSAQLTIQELGSML--------RDKQHPIILVLNNEGYT 462 (539)
T ss_pred CCeEEech--hhhhhhhHHHHHHHHHhcCCCCCeEEEEc-CcHHHhHHHHHHHHH--------HcCCCCEEEEEeCCceE
Confidence 56777654 234 344566666663 356666654 433211123233454 4678877765 2 3321
Q ss_pred -----CCCCCc----chHHHHHHHccC--C-CcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 156 -----AGVGAQ----HSHCYAAWYASV--P-GLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 156 -----~~~G~t----Hs~~~~a~~~~i--P-~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
.+.+.. +..++..+-+.+ + ++.-+.-.+..|+...++.+++.++|++|-.
T Consensus 463 ~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v~~~~el~~al~~a~~~~~p~liev 524 (539)
T TIGR03393 463 VERAIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRVSEAEQLADVLEKVAAHERLSLIEV 524 (539)
T ss_pred EEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEeccHHHHHHHHHHHhccCCeEEEEE
Confidence 011111 112222333332 1 1246677999999999999999999999853
No 197
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=68.37 E-value=56 Score=33.93 Aligned_cols=111 Identities=20% Similarity=0.176 Sum_probs=62.5
Q ss_pred CCcEeechh-hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCC-CCC-
Q 017513 83 PERVLDTPI-TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNG-AAA- 156 (370)
Q Consensus 83 p~r~~~~GI-aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G-~~~- 156 (370)
|.+|+..+. +=-..+..|.|++++. -++++++.. ..|++ ....+ ..++ ..++|++++. ..| ...
T Consensus 398 ~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~-~~~eL-~ta~--------~~~lp~~~vv~NN~~~~~~ 467 (530)
T PRK07092 398 QGSFYTMASGGLGYGLPAAVGVALAQPGRRVIGLIGDGSAMY-SIQAL-WSAA--------QLKLPVTFVILNNGRYGAL 467 (530)
T ss_pred CCceEccCCCcccchHHHHHHHHHhCCCCeEEEEEeCchHhh-hHHHH-HHHH--------HhCCCcEEEEEeChHHHHH
Confidence 678886311 1114556888887763 345555544 22332 22222 2333 3578887765 333 210
Q ss_pred -------CCC-Cc----chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 157 -------GVG-AQ----HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 157 -------~~G-~t----Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
+.+ .. +..++..+.+.. |+..+.-.+..|+...++.+.+.++|++|-
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~al~~a~~~~~p~lie 526 (530)
T PRK07092 468 RWFAPVFGVRDVPGLDLPGLDFVALARGY-GCEAVRVSDAAELADALARALAADGPVLVE 526 (530)
T ss_pred HHHHHhhCCCCCCCCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 001 10 112223444444 677778889999999999999888999884
No 198
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=68.13 E-value=37 Score=35.60 Aligned_cols=111 Identities=16% Similarity=0.108 Sum_probs=64.1
Q ss_pred CCcEeechh-h-HHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~GI-a-E~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.+|++.|- . --..++.|.|++++. -++++.+.. ..|.+- ...+ ..++ ..++|++++. ..+..+
T Consensus 411 p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~-~~eL-~ta~--------~~~lpv~~vV~NN~~~~~ 480 (574)
T PRK06882 411 PRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGDGSIQMN-IQEL-STAK--------QYDIPVVIVSLNNRFLGM 480 (574)
T ss_pred CCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEEEcchhhhcc-HHHH-HHHH--------HhCCCeEEEEEECchhHH
Confidence 789998642 3 333577888888774 344554444 223332 2222 2344 3678887776 333111
Q ss_pred --------CCCC---c---chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-CCCEEEE
Q 017513 157 --------GVGA---Q---HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFL 204 (370)
Q Consensus 157 --------~~G~---t---Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~i~ 204 (370)
..+. . +..++..+-+++ |+.-+.-.+.+|+..++.++++. ++|++|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lie 542 (574)
T PRK06882 481 VKQWQDLIYSGRHSQVYMNSLPDFAKLAEAY-GHVGIQIDTPDELEEKLTQAFSIKDKLVFVD 542 (574)
T ss_pred HHHHHHHhcCCcccccCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 0111 1 111222334443 66677889999999999999986 7898884
No 199
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=68.06 E-value=44 Score=35.08 Aligned_cols=112 Identities=16% Similarity=0.120 Sum_probs=64.2
Q ss_pred CCcEeechh-hH-HHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCCC
Q 017513 83 PERVLDTPI-TE-AGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAAA 156 (370)
Q Consensus 83 p~r~~~~GI-aE-~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~~ 156 (370)
|.+|+..+- .= -..++.|.|++++. -++++.... ..|++.+.| ...+. ..++|++++. . +|..-
T Consensus 414 ~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i~GDGsf~m~~~e--L~ta~--------r~~lpi~ivV~NN~~~~~ 483 (571)
T PRK07710 414 PDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAIVGDGGFQMTLQE--LSVIK--------ELSLPVKVVILNNEALGM 483 (571)
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHH--HHHHH--------HhCCCeEEEEEECchHHH
Confidence 778887532 11 22667788887773 355555544 223333222 23343 3577877765 2 33210
Q ss_pred --------CCCCc------chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 157 --------GVGAQ------HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 157 --------~~G~t------Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
..+.+ ...++..+-+.. |+.-....+.+|+...++++++.++|++|-.
T Consensus 484 i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lieV 545 (571)
T PRK07710 484 VRQWQEEFYNQRYSHSLLSCQPDFVKLAEAY-GIKGVRIDDELEAKEQLQHAIELQEPVVIDC 545 (571)
T ss_pred HHHHHHHHhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEEE
Confidence 00110 111222344444 7778888999999999999999899999853
No 200
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=68.06 E-value=40 Score=35.77 Aligned_cols=113 Identities=17% Similarity=0.060 Sum_probs=66.0
Q ss_pred CCcEeechh-hHH-HHHHHHHHHhccC-CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCCC-
Q 017513 83 PERVLDTPI-TEA-GFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAAA- 156 (370)
Q Consensus 83 p~r~~~~GI-aE~-~~v~~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~~- 156 (370)
|.+|++.|- .-. ..++.|.|++++. -++++++.. +.....--|-...+. +.++|++++. . ++..-
T Consensus 437 p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i~G-DG~f~m~~~eL~Ta~--------~~~lpv~ivV~NN~~~g~i 507 (612)
T PRK07789 437 PRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDG-DGCFQMTNQELATCA--------IEGIPIKVALINNGNLGMV 507 (612)
T ss_pred CCeEEcCCCcccccchhhhHHhhhccCCCCcEEEEEc-chhhhccHHHHHHHH--------HcCCCeEEEEEECCchHHH
Confidence 789997653 333 3678888888884 466766644 443211112223334 3577776665 2 32210
Q ss_pred -------CCC---Cc--ch-----HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-CCCEEEEe
Q 017513 157 -------GVG---AQ--HS-----HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFLE 205 (370)
Q Consensus 157 -------~~G---~t--Hs-----~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~i~~ 205 (370)
..+ .+ |. .++.++-+++ |..-+.-.+.+|+...++.+++. ++|++|-.
T Consensus 508 ~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~p~lIev 573 (612)
T PRK07789 508 RQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAY-GCVGLRCEREEDVDAVIEKARAINDRPVVIDF 573 (612)
T ss_pred HHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEEEE
Confidence 000 00 10 1233444444 66667789999999999999985 89999843
No 201
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=67.89 E-value=14 Score=29.75 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~ 291 (370)
+....+.+|.+.|+++|+..+++|+.. .|++.+.|.+.+++.+
T Consensus 7 ~~C~~crka~~~L~~~~i~~~~~di~~-~p~s~~eL~~~l~~~g 49 (105)
T cd03035 7 KNCDTVKKARKWLEARGVAYTFHDYRK-DGLDAATLERWLAKVG 49 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEeccc-CCCCHHHHHHHHHHhC
Confidence 455678889999999999999999886 7999999998887654
No 202
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=67.73 E-value=33 Score=36.16 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=56.6
Q ss_pred HHHHHHHHHhccC------CeeEEEcccchHHH---HHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCCCCCcc--
Q 017513 95 GFTGIGVGAAYYG------LKPVVEFMTFNFSM---QAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQH-- 162 (370)
Q Consensus 95 ~~v~~A~GlA~~G------~rp~~~t~~~~f~~---ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~~G~tH-- 162 (370)
+.+++|.|+|++- -+++++... +... ..++.+. .++ ..+.|++++.. .+.. -++++.
T Consensus 121 ~gl~~AvG~A~a~~~~~~~~~~v~~i~G-DG~l~eG~~~Eal~-~A~--------~~~~nli~IvdnN~~~-i~~~~~~~ 189 (580)
T PRK05444 121 TSISAALGMAKARDLKGGEDRKVVAVIG-DGALTGGMAFEALN-NAG--------DLKSDLIVILNDNEMS-ISPNVGAL 189 (580)
T ss_pred HHHHHHHHHHHHHHhhCCCCCeEEEEEc-ccccccCHHHHHHH-HHH--------hhCCCEEEEEECCCCc-CCCcchhh
Confidence 3556677776642 345655544 4432 4556553 333 24578877764 3332 222221
Q ss_pred ----hHHH-HHHHccCCCcEEEee---CCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 163 ----SHCY-AAWYASVPGLKVLSP---YSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 163 ----s~~~-~a~~~~iP~~~V~~P---~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
...+ ...+++. ||.++.+ .|..++...+..+.+.++|++|-.
T Consensus 190 ~~~~~~~~~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~ 239 (580)
T PRK05444 190 SNYLARLRSSTLFEEL-GFNYIGPIDGHDLDALIETLKNAKDLKGPVLLHV 239 (580)
T ss_pred hhhhccccHHHHHHHc-CCCeeeeeCCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 1111 2355554 6766644 788999999988887789998854
No 203
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=67.63 E-value=14 Score=30.25 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~ 291 (370)
.....+.+|.+.|+++|+..+++|+.. .|++.+.|.+.+++.+
T Consensus 8 p~C~~crkA~~~L~~~gi~~~~~d~~~-~p~s~~eL~~~l~~~g 50 (113)
T cd03033 8 PGCANNARQKALLEAAGHEVEVRDLLT-EPWTAETLRPFFGDLP 50 (113)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEeehhc-CCCCHHHHHHHHHHcC
Confidence 445667788889999999999999986 8999999988877543
No 204
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=67.53 E-value=16 Score=31.84 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=36.6
Q ss_pred CcEEEEEechhHH----HHHHHHHHHHhcCC---ceeEEEeccccCCCHHHHHHHHhcCCeEEEEec
Q 017513 239 KDVTITAFSKIVG----LSLKAAEILAKEGI---SAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (370)
Q Consensus 239 ~dv~Iia~G~~~~----~al~Aa~~L~~~Gi---~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe 298 (370)
..++|+++|+.+. .-...++.|++.+. +++|+|.-+.-|. +...+..++++++||-
T Consensus 2 ~~ilIlG~GN~L~~DDG~Gv~vae~L~~~~~~~~~v~vid~Gt~~~~----l~~~l~~~d~vIIVDa 64 (160)
T COG0680 2 MRILILGVGNILMGDDGFGVRVAEKLKKRYKPPENVEVIDGGTAGPN----LLGLLAGYDPVIIVDA 64 (160)
T ss_pred CeEEEEeeCCcccccCcccHHHHHHHHHhcCCCCCeEEEEcCCCcHH----HHHHhcCCCcEEEEEe
Confidence 3578888887652 23456667765543 6889999987443 4445566677777775
No 205
>PRK08322 acetolactate synthase; Reviewed
Probab=67.46 E-value=28 Score=36.20 Aligned_cols=113 Identities=16% Similarity=0.139 Sum_probs=63.3
Q ss_pred CCcEeec-hhhH-HHHHHHHHHHhccC-CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC--
Q 017513 83 PERVLDT-PITE-AGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA-- 155 (370)
Q Consensus 83 p~r~~~~-GIaE-~~~v~~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~-- 155 (370)
|.+|+.. |..= -..++.|.|++++. -++++.+.. +...-.--|-...+. ..++|++++. . +|..
T Consensus 396 ~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~G-DGsf~m~~~eL~Ta~--------~~~lpv~iiV~NN~~~g~~ 466 (547)
T PRK08322 396 PNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAVCG-DGGFMMNSQELETAV--------RLGLPLVVLILNDNAYGMI 466 (547)
T ss_pred CCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEEEc-chhHhccHHHHHHHH--------HhCCCeEEEEEeCCCcchH
Confidence 6787753 3221 23556788887773 356665544 333211112222233 3577877765 2 3321
Q ss_pred -------CC--CCCc-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 156 -------AG--VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 156 -------~~--~G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
+. .+.. |..++.++-+.. |+.-....+++|+...++++++.++|++|-.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIev 525 (547)
T PRK08322 467 RWKQENMGFEDFGLDFGNPDFVKYAESY-GAKGYRVESADDLLPTLEEALAQPGVHVIDC 525 (547)
T ss_pred HHHHHhhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 00 1111 222233344443 6777888999999999999999899998843
No 206
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=67.45 E-value=22 Score=37.50 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=63.2
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCCC
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG 157 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~~ 157 (370)
|.+|+..+- +=-..+..|.|++++. -|+++++.. +... ... |-...+. +.++|++++. ..|..+-
T Consensus 408 p~~~~~~~~~gsmG~glpaaiGa~lA~pdr~Vv~i~G-DG~f~m~~-~EL~Ta~--------r~~lpvv~iV~NN~~yg~ 477 (588)
T TIGR01504 408 PRHWINCGQAGPLGWTIPAALGVCAADPKRNVVALSG-DYDFQFMI-EELAVGA--------QHNIPYIHVLVNNAYLGL 477 (588)
T ss_pred CCcEEeCCccccccchHhHHHhhhhhCCCCcEEEEEc-chHhhccH-HHHHHHH--------HhCCCeEEEEEeCCchHH
Confidence 788887641 1223556667766663 466766654 3322 222 2223444 4688887775 3332110
Q ss_pred ---------C----CCc-----------chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEE
Q 017513 158 ---------V----GAQ-----------HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFL 204 (370)
Q Consensus 158 ---------~----G~t-----------Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~ 204 (370)
. +.. +..++.++-+++ |..-..-.+++|+...++.+++ .++|++|-
T Consensus 478 i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~~~~p~lIe 551 (588)
T TIGR01504 478 IRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGL-GCKAIRVFKPEEIAPAFEQAKALMAEHRVPVVVE 551 (588)
T ss_pred HHHHHHHhcccccceeeccccccccccCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhhcccCCCcEEEE
Confidence 0 000 011233444554 5666777999999999999995 68999884
No 207
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=67.33 E-value=42 Score=35.26 Aligned_cols=109 Identities=18% Similarity=0.215 Sum_probs=62.3
Q ss_pred cEeec-hh-hHHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC---
Q 017513 85 RVLDT-PI-TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA--- 156 (370)
Q Consensus 85 r~~~~-GI-aE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~--- 156 (370)
+|+.. |. +=-..+++|.|++++. -++++++.. +... ..... .+.+. ..++|++++. ..+..+
T Consensus 429 ~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i~G-DGsf~~~~~e-l~ta~--------~~~l~~~~vv~NN~~~g~~~ 498 (578)
T PRK06112 429 RFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVG-DGGFAHVWAE-LETAR--------RMGVPVTIVVLNNGILGFQK 498 (578)
T ss_pred eEECCCCccccccHHHHHHHHHhhCCCCcEEEEEc-chHHHhHHHH-HHHHH--------HhCCCeEEEEEeCCccCCEE
Confidence 57753 21 2245677888888774 456666544 3332 12222 23344 3578887765 333111
Q ss_pred --C---CCCcc------hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 157 --G---VGAQH------SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 157 --~---~G~tH------s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
. .+..+ ..++..+.+++ |+.-..-.++.|+...++.+++.++|++|-
T Consensus 499 ~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lIe 556 (578)
T PRK06112 499 HAETVKFGTHTDACHFAAVDHAAIARAC-GCDGVRVEDPAELAQALAAAMAAPGPTLIE 556 (578)
T ss_pred eccccccCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 01111 11223444444 566667789999999999999989999884
No 208
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=67.31 E-value=21 Score=30.34 Aligned_cols=54 Identities=19% Similarity=0.378 Sum_probs=36.7
Q ss_pred EEEEEechhH----HHHHHHHHHHHhc---CCceeEEEeccccCCCHHHHHHHHhcCCeEEEEec
Q 017513 241 VTITAFSKIV----GLSLKAAEILAKE---GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (370)
Q Consensus 241 v~Iia~G~~~----~~al~Aa~~L~~~---Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe 298 (370)
++|+++|+.. .....+++.|++. .-++++++..+. ...+...+.+++++|+||-
T Consensus 1 ilV~GiGN~l~gDDG~G~~va~~L~~~~~~~~~v~vi~~~~~----~~~l~~~l~~~d~viiVDA 61 (146)
T cd06062 1 ILVLGIGNILLADEGIGVHAVERLEENYSFPENVELIDGGTL----GLELLPYIEEADRLIIVDA 61 (146)
T ss_pred CEEEEECccccccCcHHHHHHHHHHHhcCCCCCeEEEECCCC----HHHHHHHHhcCCEEEEEEc
Confidence 3678888776 2355677777665 335888988875 2334455667888888887
No 209
>PRK07524 hypothetical protein; Provisional
Probab=67.13 E-value=55 Score=33.96 Aligned_cols=111 Identities=22% Similarity=0.262 Sum_probs=63.1
Q ss_pred CCcEee-ch-h-hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CC-CCC
Q 017513 83 PERVLD-TP-I-TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN-GAA 155 (370)
Q Consensus 83 p~r~~~-~G-I-aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~-G~~ 155 (370)
|.+|++ .+ . +=-..+..|.|++++. -++++++.. ..|.+.+.| + ..+. +.++|++++. .. +..
T Consensus 396 p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~e-l-~ta~--------~~~lpi~~vV~NN~~~g 465 (535)
T PRK07524 396 PRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPE-L-ASAV--------EADLPLIVLLWNNDGYG 465 (535)
T ss_pred CCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHH-H-HHHH--------HhCCCeEEEEEECCchH
Confidence 788887 21 1 1222567788888873 355555544 334333322 3 2344 3678888765 33 321
Q ss_pred ---------C--CCCCc-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 156 ---------A--GVGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 156 ---------~--~~G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
+ ..|.. |..++.++.+.+ |+.-..-.++.|+...++++++.++|++|-
T Consensus 466 ~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 525 (535)
T PRK07524 466 EIRRYMVARDIEPVGVDPYTPDFIALARAF-GCAAERVADLEQLQAALRAAFARPGPTLIE 525 (535)
T ss_pred HHHHHHHHhcCCccccCCCCCCHHHHHHHC-CCcEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 01111 222233444443 455556689999999999999999999984
No 210
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=66.70 E-value=65 Score=33.85 Aligned_cols=111 Identities=16% Similarity=0.098 Sum_probs=64.5
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.+|+..+- +=-..+..|.|++++. -|+++++.. ..|++-+.| ...+. ..++|++++. ..|..+
T Consensus 411 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~E--L~Ta~--------r~~lpv~~vV~NN~~y~~ 480 (572)
T PRK08979 411 PRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQE--LSTAL--------QYDIPVKIINLNNRFLGM 480 (572)
T ss_pred CCeEEccCCcccccchhhHHHhhhhhCCCCeEEEEEcchHhhccHHH--HHHHH--------HcCCCeEEEEEeCCccHH
Confidence 788987652 2234667777777773 355655544 233333322 23444 4688887775 333211
Q ss_pred --------CCCC-cc-----hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-CCCEEEE
Q 017513 157 --------GVGA-QH-----SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDPVVFL 204 (370)
Q Consensus 157 --------~~G~-tH-----s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~i~ 204 (370)
..+. .+ ..++.++-+++ |..-..-.++.|+...++.+++. ++|++|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lIe 542 (572)
T PRK08979 481 VKQWQDMIYQGRHSHSYMDSVPDFAKIAEAY-GHVGIRISDPDELESGLEKALAMKDRLVFVD 542 (572)
T ss_pred HHHHHHHHhCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEEE
Confidence 0110 01 11223344444 56677889999999999999985 8999874
No 211
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=66.61 E-value=36 Score=26.84 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=44.2
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHh-----cCCeEEEEecCCCCCChHHH
Q 017513 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-----KTNRLVTVEEGFPQHGVGAE 308 (370)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~-----~~~~vvvvEe~~~~GGlg~~ 308 (370)
.+++|.+. +..+.|.+|.+.|.+.|+...++|+.. .|-.. .+.+.+. .+=+.|++... ..||+...
T Consensus 8 ~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdid~-~~~~~-~~~~~l~~~tg~~tvP~Vfi~g~-~iGG~ddl 78 (99)
T TIGR02189 8 KAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEIDK-EPAGK-DIENALSRLGCSPAVPAVFVGGK-LVGGLENV 78 (99)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEcCC-CccHH-HHHHHHHHhcCCCCcCeEEECCE-EEcCHHHH
Confidence 45777776 667888889999999999999999874 22222 2333333 23356777765 45998763
No 212
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=66.38 E-value=18 Score=27.81 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=39.3
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHH-HhcCCeEEEEecC
Q 017513 240 DVTITAFSK----IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINAS-VRKTNRLVTVEEG 299 (370)
Q Consensus 240 dv~Iia~G~----~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~-~~~~~~vvvvEe~ 299 (370)
++.|+..|. ....|.+.++.|++.|+.+.+-+ .-..+... ++.+ ..+..-++++-+.
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~~~k~-~~~a~~~g~p~~iiiG~~ 62 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKSLGKQ-IKYADKLGIPFIIIIGEK 62 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSSTHHHH-HHHHHHTTESEEEEEEHH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCchhHH-HHHHhhcCCeEEEEECch
Confidence 578888888 45678899999999999888876 33455444 4443 3355566777653
No 213
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=66.20 E-value=17 Score=31.84 Aligned_cols=51 Identities=20% Similarity=0.367 Sum_probs=37.3
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEE
Q 017513 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVT 295 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvv 295 (370)
+|++++||+.|.++... +++.|.++|.++.+++-. .+.+.+.+++.+-||+
T Consensus 43 ~gk~vlViG~G~~~G~~--~a~~L~~~g~~V~v~~r~------~~~l~~~l~~aDiVIs 93 (168)
T cd01080 43 AGKKVVVVGRSNIVGKP--LAALLLNRNATVTVCHSK------TKNLKEHTKQADIVIV 93 (168)
T ss_pred CCCEEEEECCcHHHHHH--HHHHHhhCCCEEEEEECC------chhHHHHHhhCCEEEE
Confidence 35689999999887653 456788889988888743 2556777888875554
No 214
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=66.19 E-value=22 Score=29.28 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC
Q 017513 249 IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (370)
Q Consensus 249 ~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~ 291 (370)
....+.+|.+.|+++||...++|... .|.+.+.|.+.++..+
T Consensus 10 ~C~t~rka~~~L~~~gi~~~~~~y~~-~~~s~~eL~~~l~~~g 51 (117)
T COG1393 10 NCSTCRKALAWLEEHGIEYTFIDYLK-TPPSREELKKILSKLG 51 (117)
T ss_pred CChHHHHHHHHHHHcCCCcEEEEeec-CCCCHHHHHHHHHHcC
Confidence 34578889999999999999999875 7999999888887665
No 215
>PRK10026 arsenate reductase; Provisional
Probab=65.97 E-value=18 Score=30.83 Aligned_cols=43 Identities=16% Similarity=0.290 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~ 291 (370)
..+..+.+|.+.|+++|+..+++|+.. .|++.+.|.+.+++.+
T Consensus 10 p~Cst~RKA~~wL~~~gi~~~~~d~~~-~ppt~~eL~~~l~~~g 52 (141)
T PRK10026 10 PACGTSRNTLEMIRNSGTEPTIIHYLE-TPPTRDELVKLIADMG 52 (141)
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEeeeC-CCcCHHHHHHHHHhCC
Confidence 556778889999999999999999987 8999999988887654
No 216
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=65.94 E-value=1e+02 Score=30.18 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=47.3
Q ss_pred EEEEEec-hhHHHHHHHHHHHHhcCCc---eeEEEeccccCCCHHH-----HHHHHhcCCeEEEEecCCCCCChHHHHH
Q 017513 241 VTITAFS-KIVGLSLKAAEILAKEGIS---AEVINLRSIRPLDRST-----INASVRKTNRLVTVEEGFPQHGVGAEIC 310 (370)
Q Consensus 241 v~Iia~G-~~~~~al~Aa~~L~~~Gi~---v~Vi~~~~l~P~d~~~-----i~~~~~~~~~vvvvEe~~~~GGlg~~i~ 310 (370)
=+|+++| +...+..+|++.+++.|-+ +.++++.+-+|-+.+. |...-+.++..|-+-+|.. |....++
T Consensus 135 PvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~SdHt~--G~~~~~a 211 (329)
T TIGR03569 135 PVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYSDHTL--GIEAPIA 211 (329)
T ss_pred cEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEECCCCc--cHHHHHH
Confidence 4678888 7778899999999988874 8899999988877663 3222224554566677863 4443333
No 217
>PRK11269 glyoxylate carboligase; Provisional
Probab=65.82 E-value=48 Score=34.95 Aligned_cols=111 Identities=16% Similarity=0.139 Sum_probs=64.6
Q ss_pred CCcEeechh-h-HHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~GI-a-E~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.+|++.|- . =-..+..|.|++++. -|++++... ..|.+...| + ..+. +.++|++++. ..+..+
T Consensus 409 p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~e-L-~Ta~--------~~~lpv~~vV~NN~~~g~ 478 (591)
T PRK11269 409 PRHWINCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEE-L-AVGA--------QFNLPYIHVLVNNAYLGL 478 (591)
T ss_pred CCcEEeCCccccccchhhhHHhhhhhCCCCcEEEEEccchhhcCHHH-H-HHHH--------HhCCCeEEEEEeCCchhH
Confidence 788998752 2 223667788888774 466666654 223332222 2 2333 3678887775 333111
Q ss_pred ------C--C----CCc-----------chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEE
Q 017513 157 ------G--V----GAQ-----------HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFL 204 (370)
Q Consensus 157 ------~--~----G~t-----------Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~ 204 (370)
. . +.. +..++..+-+++ |..-....+++|+...++++++ .++|++|-
T Consensus 479 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~lie 552 (591)
T PRK11269 479 IRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGL-GCKAIRVFKPEDIAPALEQAKALMAEFRVPVVVE 552 (591)
T ss_pred HHHHHHHhccCccceeeccccccccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEE
Confidence 0 0 000 111223344444 6777788999999999999995 67899884
No 218
>cd06063 H2MP_Cyano-H2up This group of endopeptidases include HupW enzymes that are specific to the cyanobacterial hydrogenase and are involved in the C-terminal cleavage of the hydrogenase large subunit precursor protein. Cyanobacterial nickel-iron (NiFe)-hydrogenases are found exclusively in the N2-fixing strains and are encoded by hup (hydrogen uptake) genes. These uptake hydrogenases are heterodimers with a large (hupL) and small subunit (hupS) and catalyze the consumption of the H2 produced during N2 fixation. Sequence similarity shows that the putative metal-binding resides are well conserved in this group of hydrogen maturation proteases. This group also includes such proteins as the hydrogenase III from Aquifex aeolicus.
Probab=65.79 E-value=20 Score=30.46 Aligned_cols=55 Identities=9% Similarity=0.135 Sum_probs=35.8
Q ss_pred EEEEEechhHH----HHHHHHHHHHhcCC--ceeEEEeccccCCCHHHHHHHHhcCCeEEEEecC
Q 017513 241 VTITAFSKIVG----LSLKAAEILAKEGI--SAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299 (370)
Q Consensus 241 v~Iia~G~~~~----~al~Aa~~L~~~Gi--~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~ 299 (370)
++|+++|+... ....+++.|++... +++++|..+. -..+...+.+++++|+||-.
T Consensus 1 ~lVlGiGN~L~~DDG~G~~v~~~L~~~~~~~~v~~id~gt~----~~~l~~~l~~~d~vIiVDA~ 61 (146)
T cd06063 1 LTIIGCGNLNRGDDGVGPILIRRLQAYLLPPHVRLVDCGTA----GMEVMFRARGAKQLIIIDAS 61 (146)
T ss_pred CEEEEECCcccccCcHHHHHHHHHhhcCCCCCeEEEECCCC----HHHHHHHhcCCCEEEEEEeC
Confidence 36778887662 35567777765533 4788888876 22344456677888888863
No 219
>PRK05899 transketolase; Reviewed
Probab=65.44 E-value=39 Score=36.01 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=31.3
Q ss_pred HHHHccCCCcEEEeeC--CHHHHHHHHHHHHhCCCCEEEEe
Q 017513 167 AAWYASVPGLKVLSPY--SSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 167 ~a~~~~iP~~~V~~P~--d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
...++++ ||.++.-. |..++...++.+.+.++|++|..
T Consensus 206 ~~~~~a~-G~~~~~VdG~d~~~l~~al~~a~~~~~P~vI~v 245 (624)
T PRK05899 206 KKRFEAY-GWHVIEVDGHDVEAIDAAIEEAKASTKPTLIIA 245 (624)
T ss_pred HHHhccC-CCeEEEECCCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 4566776 78888777 89999999999988889998864
No 220
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=65.29 E-value=57 Score=34.31 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=61.0
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.+|+..+. +=-..++.|.|++++- -|+++.... ..|++-. |-...+. ..++|++++. .++..+
T Consensus 398 ~~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDGsf~m~~--~eL~Tav--------r~~lpi~~VV~NN~~yg~ 467 (575)
T TIGR02720 398 KNKWITSNLFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMTM--QDLLTQV--------QYHLPVINIVFSNCTYGF 467 (575)
T ss_pred CCeEEcCCCcchhhchHHHHHHHHHhCCCCcEEEEEcccHHHhhH--HHHHHHH--------HhCCCeEEEEEeCCccHH
Confidence 678887652 1112445555555552 355665544 2233322 2223444 3678887775 333221
Q ss_pred -------CCCCcc-----hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHH--hCCCCEEEE
Q 017513 157 -------GVGAQH-----SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI--RDPDPVVFL 204 (370)
Q Consensus 157 -------~~G~tH-----s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~--~~~~Pv~i~ 204 (370)
..+... ..++.++-+++ |..-..-.+..|+...++.++ +.++|++|-
T Consensus 468 i~~~~~~~~~~~~~~~~~~~df~~iA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~p~lie 528 (575)
T TIGR02720 468 IKDEQEDTNQPLIGVDFNDADFAKIAEGV-GAVGFRVNKIEQLPAVFEQAKAIKQGKPVLID 528 (575)
T ss_pred HHHHHHHhCCCcccccCCCCCHHHHHHHC-CCEEEEeCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 011111 11223344444 555666699999999999999 778999874
No 221
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=65.22 E-value=15 Score=29.86 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~ 291 (370)
+.+..+.+|.+.|+++|+.+.++|+.. .|++.+.|.+.++..+
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~~~t~~el~~~l~~~~ 49 (112)
T cd03034 7 PRCSKSRNALALLEEAGIEPEIVEYLK-TPPTAAELRELLAKLG 49 (112)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccc-CCcCHHHHHHHHHHcC
Confidence 455678889999999999999999875 7999998888877664
No 222
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=65.13 E-value=47 Score=34.70 Aligned_cols=112 Identities=17% Similarity=0.096 Sum_probs=61.2
Q ss_pred CCcEeechh-hHHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC--
Q 017513 83 PERVLDTPI-TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA-- 156 (370)
Q Consensus 83 p~r~~~~GI-aE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~-- 156 (370)
|.+++..+- +=-..++.|.|++++. -++++.+.. +... .....+ ..++ ..++|++++. ..|..+
T Consensus 406 ~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~G-DGsf~~~~~el-~ta~--------~~~l~i~~vv~nN~~~~~~ 475 (557)
T PRK08199 406 YRTQLAPTSGSMGYGLPAAIAAKLLFPERTVVAFAG-DGCFLMNGQEL-ATAV--------QYGLPIIVIVVNNGMYGTI 475 (557)
T ss_pred CCeEECCCCccccchHHHHHHHHHhCCCCcEEEEEc-chHhhccHHHH-HHHH--------HhCCCeEEEEEeCCcchHH
Confidence 556665432 1111345567777764 356665544 4332 122222 2343 3678887776 333211
Q ss_pred -------CCC----Ccc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 157 -------GVG----AQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 157 -------~~G----~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
..+ ... ..++..+.+++ |+.-..-.+++|+...+..+++.++|++|-.
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~li~v 535 (557)
T PRK08199 476 RMHQEREYPGRVSGTDLTNPDFAALARAY-GGHGETVERTEDFAPAFERALASGKPALIEI 535 (557)
T ss_pred HHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 001 111 11223444444 6667777899999999999999899998853
No 223
>PRK07586 hypothetical protein; Validated
Probab=64.86 E-value=61 Score=33.43 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=60.6
Q ss_pred CCcEeechh-hHHHHHHHHHHHhcc-CCeeEEEcccchHH-HHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC--
Q 017513 83 PERVLDTPI-TEAGFTGIGVGAAYY-GLKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA-- 155 (370)
Q Consensus 83 p~r~~~~GI-aE~~~v~~A~GlA~~-G~rp~~~t~~~~f~-~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~-- 155 (370)
|.+|+..+- +=-..+..|.|++++ .-++++++.. +.. +... |-...+. ..++|++++. . +|..
T Consensus 376 ~~~~~~~~~g~mG~~lpaaiGa~lA~p~r~Vv~i~G-DGsf~m~~-~EL~Ta~--------~~~lpv~ivV~NN~~y~~~ 445 (514)
T PRK07586 376 PHDWLTLTGGAIGQGLPLATGAAVACPDRKVLALQG-DGSAMYTI-QALWTQA--------RENLDVTTVIFANRAYAIL 445 (514)
T ss_pred CCCEEccCCcccccHHHHHHHHHHhCCCCeEEEEEe-chHHHhHH-HHHHHHH--------HcCCCCEEEEEeCchhHHH
Confidence 788886431 111244566677776 3456666644 443 2222 3233444 3678876654 2 3321
Q ss_pred -------CC--CCC--------cc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEE
Q 017513 156 -------AG--VGA--------QH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 203 (370)
Q Consensus 156 -------~~--~G~--------tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i 203 (370)
+. .|. .+ ..++..+-+.+ |..-..-.+++|+...++++++.++|.+|
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~el~~al~~a~~~~~p~li 510 (514)
T PRK07586 446 RGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGM-GVPARRVTTAEEFADALAAALAEPGPHLI 510 (514)
T ss_pred HHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHC-CCcEEEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 00 010 01 11223333433 55556668999999999999998899987
No 224
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=64.17 E-value=61 Score=28.91 Aligned_cols=68 Identities=7% Similarity=0.078 Sum_probs=46.4
Q ss_pred echhHHHHHHHHHHHHh-cCCceeEEEeccccCCCHHHH---------------HHHHhcCCeEEEEecCCCCCChHHHH
Q 017513 246 FSKIVGLSLKAAEILAK-EGISAEVINLRSIRPLDRSTI---------------NASVRKTNRLVTVEEGFPQHGVGAEI 309 (370)
Q Consensus 246 ~G~~~~~al~Aa~~L~~-~Gi~v~Vi~~~~l~P~d~~~i---------------~~~~~~~~~vvvvEe~~~~GGlg~~i 309 (370)
+|++...|..+++.+++ .|+++++++++...| .+.. .+.+..++.|++. -....|++...+
T Consensus 12 ~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~g-sPty~g~~~~~l 88 (200)
T PRK03767 12 YGHIETMAEAVAEGAREVAGAEVTIKRVPETVP--EEVAKKAGGKTDQAAPVATPDELADYDAIIFG-TPTRFGNMAGQM 88 (200)
T ss_pred CCHHHHHHHHHHHHHhhcCCcEEEEEeccccCC--HHHHHhcCCCcccCCCccCHHHHHhCCEEEEE-ecccCCCchHHH
Confidence 45677778888888887 899999999875433 2111 3445667765543 344578899888
Q ss_pred HHHHHhh
Q 017513 310 CASVIEE 316 (370)
Q Consensus 310 ~~~l~~~ 316 (370)
..++...
T Consensus 89 k~fld~~ 95 (200)
T PRK03767 89 RNFLDQT 95 (200)
T ss_pred HHHHHHh
Confidence 8887653
No 225
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=64.00 E-value=71 Score=32.00 Aligned_cols=71 Identities=27% Similarity=0.307 Sum_probs=52.3
Q ss_pred cEEEE---EechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHH
Q 017513 240 DVTIT---AFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 240 dv~Ii---a~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
.|+|+ .||++-..|...++-|.++|+++.++++..- |...|.+.+.+++.+++ =.....++..-.+...|.
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~---~~~eI~~~i~~a~~~vv-GsPT~~~~~~p~i~~~l~ 321 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA---DPSEIVEEILDAKGLVV-GSPTINGGAHPPIQTALG 321 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccC---CHHHHHHHHhhcceEEE-ecCcccCCCCchHHHHHH
Confidence 45555 6789999999999999999999999999886 78888888888876554 334444554444444443
No 226
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=63.64 E-value=15 Score=29.97 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~ 291 (370)
..+..+.+|.+.|+++|+++.++|+.. .|+..+.|.+.++..+
T Consensus 7 ~~C~t~rkA~~~L~~~~i~~~~~di~~-~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 7 PRCSKSRNTLALLEDKGIEPEVVKYLK-NPPTKSELEAIFAKLG 49 (114)
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEeccC-CCcCHHHHHHHHHHcC
Confidence 456678889999999999999999886 8999999988887654
No 227
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=63.10 E-value=36 Score=25.87 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=38.0
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHH-HhcCCeEEEEecCC
Q 017513 240 DVTITAFSK----IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINAS-VRKTNRLVTVEEGF 300 (370)
Q Consensus 240 dv~Iia~G~----~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~-~~~~~~vvvvEe~~ 300 (370)
+++|+..+. ....|++.++.|++.|+++.+ |.+. +.+... ++.+ ..+...++++-+..
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~-d~~~-~~l~k~-i~~a~~~g~~~~iiiG~~e 65 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLL-DDRN-ERPGVK-FADADLIGIPYRIVVGKKS 65 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEE-ECCC-CCcccc-hhHHHhcCCCEEEEECCch
Confidence 466777664 456788899999999999976 4442 455544 3332 34566677776543
No 228
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=61.59 E-value=92 Score=32.69 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=63.0
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.+|+..|- +=-..+..|.|++++. -++++++.. ..|.+.+ |-...+. +.++|++++. ..|..+
T Consensus 411 p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~--~eL~Ta~--------r~~l~v~ivV~NN~~yg~ 480 (574)
T PRK07979 411 PRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNI--QELSTAL--------QYELPVLVLNLNNRYLGM 480 (574)
T ss_pred CCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEEEcchhhhccH--HHHHHHH--------HhCCCeEEEEEeCchhhH
Confidence 788887641 1123566777777773 355555544 2233332 2233444 4688887775 333111
Q ss_pred --------CCCCc-c-----hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC---CCCEEEE
Q 017513 157 --------GVGAQ-H-----SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD---PDPVVFL 204 (370)
Q Consensus 157 --------~~G~t-H-----s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~---~~Pv~i~ 204 (370)
..+.. + ..++..+-+++ |..-..-.+++|+...++.+++. ++|.+|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~g~~v~~~~eL~~al~~a~~~~~~~~p~lIe 544 (574)
T PRK07979 481 VKQWQDMIYSGRHSQSYMQSLPDFVRLAEAY-GHVGIQISHPDELESKLSEALEQVRNNRLVFVD 544 (574)
T ss_pred HHHHHHHhcCCccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhccCCCCcEEEE
Confidence 01110 0 01223344444 55566779999999999999985 8899884
No 229
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=60.55 E-value=47 Score=32.36 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=53.4
Q ss_pred EeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC--eEEEEecCCCCCChHHHHHH
Q 017513 234 IEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN--RLVTVEEGFPQHGVGAEICA 311 (370)
Q Consensus 234 vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~--~vvvvEe~~~~GGlg~~i~~ 311 (370)
.+-+|..++++++|..-.. |++.++.-|.+|.++-..+=.-.+.+.|.+.+..++ .+.+....+. .|.-+.+.+
T Consensus 88 ~lePgd~vLv~~~G~wg~r---a~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsS-TgV~q~~~~ 163 (385)
T KOG2862|consen 88 LLEPGDNVLVVSTGTWGQR---AADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSS-TGVLQDLLA 163 (385)
T ss_pred hcCCCCeEEEEEechHHHH---HHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCcc-ccccchHHH
Confidence 4557888999999998876 455666669999999777767789999988888664 3444444444 455555444
Q ss_pred HH
Q 017513 312 SV 313 (370)
Q Consensus 312 ~l 313 (370)
..
T Consensus 164 ~~ 165 (385)
T KOG2862|consen 164 IS 165 (385)
T ss_pred HH
Confidence 33
No 230
>cd00518 H2MP Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.
Probab=59.55 E-value=31 Score=28.90 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=35.4
Q ss_pred EEEechhHH----HHHHHHHHHHhcC--CceeEEEeccccCCCHHHHHHHHhcCCeEEEEecC
Q 017513 243 ITAFSKIVG----LSLKAAEILAKEG--ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299 (370)
Q Consensus 243 Iia~G~~~~----~al~Aa~~L~~~G--i~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~ 299 (370)
|+++|+... ....+++.|+++. -+++++|..+. ...+...+.+++++|+||-.
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~id~gt~----~~~l~~~l~~~d~viiVDA~ 60 (139)
T cd00518 2 VLGIGNPLRGDDGFGPAVAERLEERYLPPGVEVIDGGTL----GLELLDLLEGADRVIIVDAV 60 (139)
T ss_pred EEEECCcccccCcHHHHHHHHHHhcCCCCCeEEEECCCC----HHHHHHHHhcCCeEEEEECc
Confidence 667776652 3556777787663 46888888886 22344556668888888864
No 231
>PRK07064 hypothetical protein; Provisional
Probab=59.32 E-value=32 Score=35.74 Aligned_cols=113 Identities=20% Similarity=0.189 Sum_probs=62.3
Q ss_pred CCcEeechh-hHHHHHHHHHHHhccC-CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC---
Q 017513 83 PERVLDTPI-TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA--- 156 (370)
Q Consensus 83 p~r~~~~GI-aE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~--- 156 (370)
|.+++..+- +=-..++.|.|++++. -++++.... +.....--|-...+. +.++|++++. ..|..+
T Consensus 396 p~~~~~~~~g~mG~~lpaAiGa~lA~p~~~vv~i~G-DGsf~m~~~eL~Ta~--------~~~lpv~ivV~NN~~yg~~~ 466 (544)
T PRK07064 396 PRANVHALGGGIGQGLAMAIGAALAGPGRKTVGLVG-DGGLMLNLGELATAV--------QENANMVIVLMNDGGYGVIR 466 (544)
T ss_pred CCceeccCCCccccccchhhhhhhhCcCCcEEEEEc-chHhhhhHHHHHHHH--------HhCCCeEEEEEeCChhHHHH
Confidence 666665421 1122456677777664 456665544 433211112222333 3578887765 233111
Q ss_pred -------C---CCC-cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 157 -------G---VGA-QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 157 -------~---~G~-tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
+ .+. .|..++..+-+.. |..-....+++|+...++.+++.++|++|-.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV 525 (544)
T PRK07064 467 NIQDAQYGGRRYYVELHTPDFALLAASL-GLPHWRVTSADDFEAVLREALAKEGPVLVEV 525 (544)
T ss_pred HHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHcCCCCEEEEE
Confidence 1 011 1222233344443 6667788999999999999999889998843
No 232
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=59.27 E-value=43 Score=29.06 Aligned_cols=56 Identities=9% Similarity=0.160 Sum_probs=39.1
Q ss_pred cEEEEEechhHH----HHHHHHHHHHhc-C--CceeEEEeccccCCCHHHHHHHHhcCCeEEEEecC
Q 017513 240 DVTITAFSKIVG----LSLKAAEILAKE-G--ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299 (370)
Q Consensus 240 dv~Iia~G~~~~----~al~Aa~~L~~~-G--i~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~ 299 (370)
+++|+++|+... ....+++.|+++ . -+++++|..+. -..+...+..++++|+||-.
T Consensus 2 ~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~~v~vid~gt~----~~~ll~~l~~~d~vIiVDA~ 64 (164)
T PRK10466 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTA----GMELLGDMANRDHLIIADAI 64 (164)
T ss_pred ceEEEEECchhhccCcHHHHHHHHHHHhcCCCCCeEEEecccc----HHHHHHHHhCCCEEEEEEec
Confidence 478999998773 356778888654 3 35889998885 23344556678888888864
No 233
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=58.98 E-value=40 Score=25.44 Aligned_cols=57 Identities=23% Similarity=0.288 Sum_probs=36.8
Q ss_pred cEEEEEech----hHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHH-HhcCCeEEEEecC
Q 017513 240 DVTITAFSK----IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINAS-VRKTNRLVTVEEG 299 (370)
Q Consensus 240 dv~Iia~G~----~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~-~~~~~~vvvvEe~ 299 (370)
++.|+..+. ....|++.++.|+..|+.+.+-+ .. +.+... +..+ ..+...++++.+.
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~-~~-~~~~k~-~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD-RE-RKIGKK-FREADLRGVPFAVVVGED 64 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC-CC-cCHhHH-HHHHHhCCCCEEEEECCC
Confidence 567777764 56778888999999999888643 22 455444 3332 2234567777763
No 234
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=58.46 E-value=57 Score=34.22 Aligned_cols=112 Identities=18% Similarity=0.174 Sum_probs=64.0
Q ss_pred CCcEeechh-h-HHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCCC
Q 017513 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAAA 156 (370)
Q Consensus 83 p~r~~~~GI-a-E~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~~ 156 (370)
|.||+..+- . =-..+..|.|++++. -++++.+.. +... .....+ ..+. ..++|++++. . +|...
T Consensus 398 ~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~G-DGsf~m~~~eL-~Ta~--------~~~lpv~ivV~NN~~~g~ 467 (574)
T PRK09124 398 KRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALSG-DGGFSMLMGDF-LSLV--------QLKLPVKIVVFNNSVLGF 467 (574)
T ss_pred CCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEec-CcHHhccHHHH-HHHH--------HhCCCeEEEEEeCCcccc
Confidence 678886421 1 123677888888763 466666654 4332 222222 2333 3578877665 2 32210
Q ss_pred --------C---CCCc-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 157 --------G---VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 157 --------~---~G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
+ .+.. +..++..+-.++ |+.-+...++.|+...++++++.++|++|-.
T Consensus 468 i~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIev 527 (574)
T PRK09124 468 VAMEMKAGGYLTDGTDLHNPDFAAIAEAC-GITGIRVEKASELDGALQRAFAHDGPALVDV 527 (574)
T ss_pred HHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 0 0110 111222333443 6777888999999999999999899999843
No 235
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=58.04 E-value=45 Score=30.04 Aligned_cols=56 Identities=14% Similarity=0.274 Sum_probs=39.6
Q ss_pred CcEEEEEechhH----HHHHHHHHHHHhc---CCceeEEEeccccCCCHHHHHHHHhcCCeEEEEec
Q 017513 239 KDVTITAFSKIV----GLSLKAAEILAKE---GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (370)
Q Consensus 239 ~dv~Iia~G~~~----~~al~Aa~~L~~~---Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe 298 (370)
.+++|+++|+.. .....+++.|++. .-+++++|.-+.-+ .+...+.+++++|+||-
T Consensus 4 ~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~~~~V~vid~Gt~g~----~ll~~i~~~d~vIiVDA 66 (195)
T PRK10264 4 QRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQGL----NLLGYVESASHLLILDA 66 (195)
T ss_pred CCEEEEEeCccccccCcHHHHHHHHHHhhcCCCCCeEEEECCCCHH----HHHHHHcCCCEEEEEEC
Confidence 468899999877 2456778888654 23488999888632 34456677888888885
No 236
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=57.95 E-value=95 Score=32.85 Aligned_cols=109 Identities=15% Similarity=0.081 Sum_probs=60.9
Q ss_pred EeechhhHHHHHHHHHHHhcc----CC-eeEEEcccchHH--H-HHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC--
Q 017513 86 VLDTPITEAGFTGIGVGAAYY----GL-KPVVEFMTFNFS--M-QAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-- 154 (370)
Q Consensus 86 ~~~~GIaE~~~v~~A~GlA~~----G~-rp~~~t~~~~f~--~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-- 154 (370)
++.+|+.= +.+++|.|+|.+ |. ..+++.+. +.. . .++|.+. .++. +++|++++.. .+.
T Consensus 109 ~~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~iG-DG~~~eG~~~EAln-~A~~--------~k~~li~Ii~dN~~si 177 (581)
T PRK12315 109 FFTVGHTS-TSIALATGLAKARDLKGEKGNIIAVIG-DGSLSGGLALEGLN-NAAE--------LKSNLIIIVNDNQMSI 177 (581)
T ss_pred CcCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEEEC-chhhhcchHHHHHH-HHHh--------hCCCEEEEEECCCCcC
Confidence 35667643 577888888776 32 23333333 332 2 5677764 3553 4689999874 332
Q ss_pred CCCCC-CcchHH---------HHHHHcc--CCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 155 AAGVG-AQHSHC---------YAAWYAS--VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 155 ~~~~G-~tHs~~---------~~a~~~~--iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
++.-+ .++... ....+.+ ++.+.++...|..++..+++.+-+.++|++|-.
T Consensus 178 ~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~~~~gP~~i~~ 240 (581)
T PRK12315 178 AENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVKDIDHPIVLHI 240 (581)
T ss_pred CCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 22211 111111 1235555 444444455677788888887766689999853
No 237
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=57.82 E-value=55 Score=29.37 Aligned_cols=69 Identities=17% Similarity=0.144 Sum_probs=51.9
Q ss_pred echhHHHHHHHHHHHHhcCCceeEEEeccc--cC----------------CC-HHHHHHHHhcCCeEEEEecCCCCCChH
Q 017513 246 FSKIVGLSLKAAEILAKEGISAEVINLRSI--RP----------------LD-RSTINASVRKTNRLVTVEEGFPQHGVG 306 (370)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l--~P----------------~d-~~~i~~~~~~~~~vvvvEe~~~~GGlg 306 (370)
+|++...+..+++.+++.|.++++++++-. +| -| .+.|.+.+..++.||+.= -...|+++
T Consensus 13 ~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gs-Pvy~g~vs 91 (207)
T COG0655 13 NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGS-PVYFGNVS 91 (207)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeC-CeecCCch
Confidence 588888888999999999999999998854 22 12 355666677777666544 45679999
Q ss_pred HHHHHHHHh
Q 017513 307 AEICASVIE 315 (370)
Q Consensus 307 ~~i~~~l~~ 315 (370)
+.+..++-.
T Consensus 92 a~~K~fiDR 100 (207)
T COG0655 92 AQMKAFIDR 100 (207)
T ss_pred HHHHHHHhh
Confidence 999888755
No 238
>PRK12474 hypothetical protein; Provisional
Probab=57.59 E-value=82 Score=32.59 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=62.5
Q ss_pred CCcEeechhh-HHHHHHHHHHHhccC-CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCCC--
Q 017513 83 PERVLDTPIT-EAGFTGIGVGAAYYG-LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAAA-- 156 (370)
Q Consensus 83 p~r~~~~GIa-E~~~v~~A~GlA~~G-~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~~-- 156 (370)
|.+|+..+-. =-..+..|.|++++- -|+++++.. +.....--|-...+. ..++|++++. . +|..-
T Consensus 380 p~~~~~~~~gsmG~glpaAiGa~lA~p~r~vv~i~G-DG~f~m~~qEL~Ta~--------r~~lpv~iiV~NN~~y~~i~ 450 (518)
T PRK12474 380 PHTHLPLTGGSIGQGLPLAAGAAVAAPDRKVVCPQG-DGGAAYTMQALWTMA--------RENLDVTVVIFANRSYAILN 450 (518)
T ss_pred CCCEEccCCCccCccHHHHHHHHHHCCCCcEEEEEc-CchhcchHHHHHHHH--------HHCCCcEEEEEcCCcchHHH
Confidence 7888865321 112456677777762 355555544 433211123334444 3678877765 3 33210
Q ss_pred -------C--CCCc-------ch--HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 157 -------G--VGAQ-------HS--HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 157 -------~--~G~t-------Hs--~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
. .+.. +. .++..+-+.+ |..-..-.+++|+...++.+++.++|++|-
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~rv~~~~eL~~al~~a~~~~~p~lie 515 (518)
T PRK12474 451 GELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGL-GVEASRATTAEEFSAQYAAAMAQRGPRLIE 515 (518)
T ss_pred HHHHhhcCCCCCccccccccCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHcCCCCEEEE
Confidence 0 0100 11 1223344443 566777889999999999999989999873
No 239
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=56.63 E-value=55 Score=24.35 Aligned_cols=71 Identities=20% Similarity=0.114 Sum_probs=42.6
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc-CCeEEEEecCCCCCChHHHHHHHH
Q 017513 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVGAEICASV 313 (370)
Q Consensus 238 g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~-~~~vvvvEe~~~~GGlg~~i~~~l 313 (370)
..+++|.+ -+....+.+|.+.|++.|++.+.+|+..- -+.+.+.+.... +=++|+++. ...||+. +|.++|
T Consensus 7 ~~~V~ly~-~~~Cp~C~~ak~~L~~~gi~y~~idi~~~--~~~~~~~~~~g~~~vP~i~i~g-~~igG~~-~l~~~l 78 (79)
T TIGR02190 7 PESVVVFT-KPGCPFCAKAKATLKEKGYDFEEIPLGND--ARGRSLRAVTGATTVPQVFIGG-KLIGGSD-ELEAYL 78 (79)
T ss_pred CCCEEEEE-CCCCHhHHHHHHHHHHcCCCcEEEECCCC--hHHHHHHHHHCCCCcCeEEECC-EEEcCHH-HHHHHh
Confidence 34565554 47778888899999999999999997541 122233332221 224466654 4568874 444443
No 240
>TIGR00072 hydrog_prot hydrogenase maturation protease. HycI and HoxM are well-characterized as responsible for C-terminal protease activity on their respective hydrogenase large chains. A large number of homologous proteins appear responsible for the maturation of various forms of hydrogenase.
Probab=56.47 E-value=41 Score=28.46 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=34.9
Q ss_pred EEEEechhHH----HHHHHHHHHHhcC---CceeEEEeccccCCCHHHHHHHHhcCCeEEEEecC
Q 017513 242 TITAFSKIVG----LSLKAAEILAKEG---ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299 (370)
Q Consensus 242 ~Iia~G~~~~----~al~Aa~~L~~~G---i~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~ 299 (370)
+|+++|+... .-..+++.|+++. -+++++|..+. ...+...+.+++++|+||--
T Consensus 1 lViGiGN~l~~DDg~G~~v~~~L~~~~~~~~~v~~id~g~~----~~~l~~~l~~~d~viiVDA~ 61 (145)
T TIGR00072 1 LVLGIGNILRGDDGFGPRVAERLEERYEFPPGVEVLDGGTL----GLELLDAIEGADRVIVVDAV 61 (145)
T ss_pred CEEEECchhcccCcHHHHHHHHHHHhcCCCCCeEEEECCCC----HHHHHHHHhCCCEEEEEEcc
Confidence 3677776652 3456777776652 35888888876 23344556678888888863
No 241
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=56.12 E-value=62 Score=33.64 Aligned_cols=112 Identities=21% Similarity=0.207 Sum_probs=64.8
Q ss_pred CCCcEeech-hh-HHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC
Q 017513 82 GPERVLDTP-IT-EAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA 155 (370)
Q Consensus 82 ~p~r~~~~G-Ia-E~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~ 155 (370)
.|.+|+..+ .. =-..+..|.|++++. -++++.+.. ..|.+.+-| + ..+. +.++|++++. . ++..
T Consensus 397 ~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~m~~~e-L-~Ta~--------~~~lpi~ivV~NN~~y~ 466 (539)
T TIGR02418 397 RARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSSME-L-ETAV--------RLKLNIVHIIWNDNGYN 466 (539)
T ss_pred CCCceecCCCccccccHHHHHHHHHHhCCCCcEEEEEcchhhhchHHH-H-HHHH--------HhCCCeEEEEEECCcch
Confidence 378887643 11 123556778877663 356666654 223332222 2 3344 3578887775 2 3321
Q ss_pred C---------C--CCCc-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 156 A---------G--VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 156 ~---------~--~G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
. + .+.. +..++..+-+.+ |+.-....+++|+...++++++.++|.+|-
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~p~lIe 526 (539)
T TIGR02418 467 MVEFQEEMKYQRSSGVDFGPIDFVKYAESF-GAKGLRVESPDQLEPTLRQAMEVEGPVVVD 526 (539)
T ss_pred HHHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0 0110 112233444444 677788999999999999999989999984
No 242
>PRK06756 flavodoxin; Provisional
Probab=55.94 E-value=78 Score=26.53 Aligned_cols=81 Identities=6% Similarity=0.034 Sum_probs=44.3
Q ss_pred echhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhc-cCCCCCC
Q 017513 246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEES-FGYLDAP 324 (370)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~-~~~l~~~ 324 (370)
+|++-..|...++.|++.|+++.++|+....+ . ..+.+++.|++.=-.+-.|-+...+..++.+.. ....+.+
T Consensus 12 tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~--~----~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~ 85 (148)
T PRK06756 12 SGNTEEMADHIAGVIRETENEIEVIDIMDSPE--A----SILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKK 85 (148)
T ss_pred CchHHHHHHHHHHHHhhcCCeEEEeehhccCC--H----HHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCE
Confidence 46666667777777888899999988765321 1 224456665554322222445555666654421 1111345
Q ss_pred EEEEecCC
Q 017513 325 VERIAGAD 332 (370)
Q Consensus 325 ~~~ig~~d 332 (370)
+..+|..+
T Consensus 86 ~~~fgt~~ 93 (148)
T PRK06756 86 AAVFGSCD 93 (148)
T ss_pred EEEEeCCC
Confidence 55666544
No 243
>PLN02790 transketolase
Probab=55.94 E-value=68 Score=34.47 Aligned_cols=74 Identities=11% Similarity=0.102 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhhccccCCCCcccC-EEEEe-CCCC--CCCCCCcchHHHHHHHccCCCcEEEee----CCHHHHHHHHHH
Q 017513 122 QAIDHIINSAAKSNYMSSGQISVP-IVFRG-PNGA--AAGVGAQHSHCYAAWYASVPGLKVLSP----YSSEDARGLLKA 193 (370)
Q Consensus 122 ra~dqi~~~~a~~~~~~~g~~~~p-vv~~~-~~G~--~~~~G~tHs~~~~a~~~~iP~~~V~~P----~d~~e~~~~l~~ 193 (370)
.++|.+.. ++ .+++| ++++. ..+. ++..+..........+++. ||.++.+ .|..++..+++.
T Consensus 153 ~~~EAl~~-A~--------~~~L~nli~i~d~N~~~i~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l~~a~~~ 222 (654)
T PLN02790 153 ISNEAASL-AG--------HWGLGKLIVLYDDNHISIDGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEIRAAIKE 222 (654)
T ss_pred HHHHHHHH-HH--------HhCCCCEEEEEecCCccccCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHHHHHHHH
Confidence 56666543 44 36776 56554 3332 2222222222223567776 9999998 467788888888
Q ss_pred HHh-CCCCEEEEe
Q 017513 194 AIR-DPDPVVFLE 205 (370)
Q Consensus 194 a~~-~~~Pv~i~~ 205 (370)
+.+ .++|++|..
T Consensus 223 a~~~~~~P~lI~~ 235 (654)
T PLN02790 223 AKAVTDKPTLIKV 235 (654)
T ss_pred HHhcCCCeEEEEE
Confidence 876 578999854
No 244
>PRK08611 pyruvate oxidase; Provisional
Probab=55.70 E-value=70 Score=33.66 Aligned_cols=112 Identities=17% Similarity=0.128 Sum_probs=62.4
Q ss_pred CCcEeec-hhhH-HHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDT-PITE-AGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~-GIaE-~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.+|+.. +..- -..+..|.|++++- -++++.+.. ..|++-+ ..+ ..+. ..++|++++. ..+..+
T Consensus 398 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDGsf~m~~-~eL-~Ta~--------r~~l~~iivV~NN~~~g~ 467 (576)
T PRK08611 398 NQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMVM-QDF-VTAV--------KYKLPIVVVVLNNQQLAF 467 (576)
T ss_pred CCeEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcccHHhhhH-HHH-HHHH--------HhCCCeEEEEEeCCcchH
Confidence 6777752 2111 12456667777763 466666654 2233322 222 3444 3678876665 322211
Q ss_pred ------CCC-C---cc--hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 157 ------GVG-A---QH--SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 157 ------~~G-~---tH--s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
..+ . +. ..++.++-+++ |..-....+++|+...++++++.++|++|-.
T Consensus 468 i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIeV 527 (576)
T PRK08611 468 IKYEQQAAGELEYAIDLSDMDYAKFAEAC-GGKGYRVEKAEELDPAFEEALAQDKPVIIDV 527 (576)
T ss_pred HHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 001 0 11 11223344443 6677788999999999999999999999853
No 245
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=55.63 E-value=65 Score=33.74 Aligned_cols=111 Identities=20% Similarity=0.114 Sum_probs=63.4
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC-
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA- 155 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~- 155 (370)
|.+|+..+- +=-..+..|.|++++. -++++++.. ..|.+.+ |-...+. +.++|++++. . +|..
T Consensus 411 p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~m~~--~eL~Ta~--------~~~l~i~ivV~NN~~yg~ 480 (572)
T PRK06456 411 PRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTG--TNLATAV--------DEHIPVISVIFDNRTLGL 480 (572)
T ss_pred CCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEEEccchHhcch--HHHHHHH--------HhCCCeEEEEEECCchHH
Confidence 788887432 1112457777877774 355555544 2233322 2223344 3578877765 2 3321
Q ss_pred -C------CCCC---c---chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 156 -A------GVGA---Q---HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 156 -~------~~G~---t---Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
. ..+. + +..++.++-+++ |..-+...++.|+...+.+++..++|.+|-
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lIe 541 (572)
T PRK06456 481 VRQVQDLFFGKRIVGVDYGPSPDFVKLAEAF-GALGFNVTTYEDIEKSLKSAIKEDIPAVIR 541 (572)
T ss_pred HHHHHHHhhCCCcccccCCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0110 0 111233444444 666778899999999999999989999874
No 246
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=55.55 E-value=46 Score=35.02 Aligned_cols=112 Identities=19% Similarity=0.139 Sum_probs=62.7
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCCC
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAG 157 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~~ 157 (370)
|.+|+..+- +=-..+..|.|++++. -++++++.. ..|.+.+.| + ..+. ..++|++++. ..|..+-
T Consensus 412 p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~e-l-~Ta~--------~~~lpi~~vV~NN~~~~~ 481 (570)
T PRK06725 412 PRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDASFQMNIQE-L-QTIA--------ENNIPVKVFIINNKFLGM 481 (570)
T ss_pred CCeEEccCCcccccchhhHHHhhHhhcCCCeEEEEEecchhhccHHH-H-HHHH--------HhCCCeEEEEEECCccHH
Confidence 778886531 1224567777777774 356666654 233333322 2 3444 3688887776 2332110
Q ss_pred ---------C----CCcc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 158 ---------V----GAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 158 ---------~----G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
. +... ..++..+-+++ |..-..-.++.|+..+++.+.+.++|++|-.
T Consensus 482 ~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~p~liev 542 (570)
T PRK06725 482 VRQWQEMFYENRLSESKIGSPDFVKVAEAY-GVKGLRATNSTEAKQVMLEAFAHEGPVVVDF 542 (570)
T ss_pred HHHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 0 0011 11222344433 4444555899999999999999999998843
No 247
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=55.14 E-value=23 Score=29.36 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=31.6
Q ss_pred echhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEec
Q 017513 246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (370)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe 298 (370)
+|+.-..|.+.++.|+++|+++.++++... +.. + ..+...+.++++=-
T Consensus 7 tG~te~~A~~ia~~l~~~g~~~~~~~~~~~---~~~-~-~~~~~~~~~i~~~s 54 (143)
T PF00258_consen 7 TGNTEKMAEAIAEGLRERGVEVRVVDLDDF---DDS-P-SDLSEYDLLIFGVS 54 (143)
T ss_dssp SSHHHHHHHHHHHHHHHTTSEEEEEEGGGS---CHH-H-HHHCTTSEEEEEEE
T ss_pred chhHHHHHHHHHHHHHHcCCceeeechhhh---hhh-h-hhhhhhceeeEeec
Confidence 456666777777888889999999987765 433 3 33445555554443
No 248
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=55.02 E-value=7.6 Score=31.46 Aligned_cols=38 Identities=26% Similarity=0.278 Sum_probs=26.0
Q ss_pred eCCcEEEEEechhHHH-HHHHHHHHHhcCCceeEEEecc
Q 017513 237 EGKDVTITAFSKIVGL-SLKAAEILAKEGISAEVINLRS 274 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~-al~Aa~~L~~~Gi~v~Vi~~~~ 274 (370)
+.-|++||++|..... -.+..+.|+++||.+++.|-+.
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~~ 90 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTPA 90 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HHH
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHHH
Confidence 4679999999966433 4456778899999999997543
No 249
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=55.00 E-value=78 Score=28.92 Aligned_cols=72 Identities=24% Similarity=0.203 Sum_probs=46.2
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhcc
Q 017513 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESF 318 (370)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~ 318 (370)
.++.||--=|.+.. |+.+| |....=+.+.|+.+-+.+.++..+....+++++-+.. ++ -++|+..|.++|+
T Consensus 95 ~~v~iIPgiSS~q~---a~ARl---g~~~~~~~~islHgr~~~~l~~~~~~~~~~vil~~~~-~~--P~~IA~~L~~~G~ 165 (210)
T COG2241 95 EEVEIIPGISSVQL---AAARL---GWPLQDTEVISLHGRPVELLRPLLENGRRLVILTPDD-FG--PAEIAKLLTENGI 165 (210)
T ss_pred cceEEecChhHHHH---HHHHh---CCChHHeEEEEecCCCHHHHHHHHhCCceEEEeCCCC-CC--HHHHHHHHHhCCC
Confidence 45666653344443 33345 5555544455566888888888886666777777654 22 5789999999886
Q ss_pred C
Q 017513 319 G 319 (370)
Q Consensus 319 ~ 319 (370)
.
T Consensus 166 ~ 166 (210)
T COG2241 166 G 166 (210)
T ss_pred C
Confidence 4
No 250
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=54.69 E-value=78 Score=32.82 Aligned_cols=146 Identities=17% Similarity=0.148 Sum_probs=81.0
Q ss_pred HHHHHHHHHhc--CCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechh-hHHHHHHHHHHHhcc-CCeeEEEcccch
Q 017513 43 LNSALDEEMSA--DPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI-TEAGFTGIGVGAAYY-GLKPVVEFMTFN 118 (370)
Q Consensus 43 ~~~~L~~l~~~--~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GI-aE~~~v~~A~GlA~~-G~rp~~~t~~~~ 118 (370)
+++-|-+.+.+ -+.++.+-.|-. ..+++.+ ++. |+ +-.+|- .|-|+.-.|=|.|+. |+-.++.||. .
T Consensus 6 ~G~YLf~RL~q~gvksvfgVPGDFN-----L~LLD~l-~~~-~~-lrwvGn~NELNaAYAADGYAR~~Gi~a~VtTfg-V 76 (561)
T KOG1184|consen 6 LGEYLFRRLVQAGVKTVFGVPGDFN-----LSLLDKL-YAV-PG-LRWVGNCNELNAAYAADGYARSKGIGACVTTFG-V 76 (561)
T ss_pred HHHHHHHHHHHcCCceeEECCCccc-----HHHHHHh-hhc-CC-ceeecccchhhhhhhhcchhhhcCceEEEEEec-c
Confidence 45555544433 345666666643 2234333 333 33 444443 699999999999988 8888888875 5
Q ss_pred HHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCC-CCC----cch---HHHH---HHHccCCCcEEEeeCCHHHH
Q 017513 119 FSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAG-VGA----QHS---HCYA---AWYASVPGLKVLSPYSSEDA 187 (370)
Q Consensus 119 f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~-~G~----tHs---~~~~---a~~~~iP~~~V~~P~d~~e~ 187 (370)
.-.-|++-|-- +| -.++||+.+. +.++.. .+. ||. .++. .++..+- ....+-.|.+++
T Consensus 77 GeLSAlNGIAG--sY-------AE~vpVihIV-G~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vs-c~~a~I~~~e~A 145 (561)
T KOG1184|consen 77 GELSALNGIAG--AY-------AENVPVIHIV-GVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVT-CYTAMINDIEDA 145 (561)
T ss_pred chhhhhcccch--hh-------hhcCCEEEEE-CCCCcccccccchheeecCCCchHHHHHHHHhhh-hHHhhhcCHhhh
Confidence 55667776543 33 2799999885 233221 111 331 2222 2222222 122333455555
Q ss_pred HH----HHHHHHhCCCCEEEEeccc
Q 017513 188 RG----LLKAAIRDPDPVVFLENEL 208 (370)
Q Consensus 188 ~~----~l~~a~~~~~Pv~i~~~~~ 208 (370)
-+ +++.++...+||||-.|..
T Consensus 146 ~~~ID~aI~~~~~~~rPVYi~iP~n 170 (561)
T KOG1184|consen 146 PEQIDKAIRTALKESKPVYIGVPAN 170 (561)
T ss_pred HHHHHHHHHHHHHhcCCeEEEeecc
Confidence 44 5555555789999987654
No 251
>cd06070 H2MP_like-2 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=54.63 E-value=38 Score=28.51 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=35.1
Q ss_pred EEEEechhH----HHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecC
Q 017513 242 TITAFSKIV----GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299 (370)
Q Consensus 242 ~Iia~G~~~----~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~ 299 (370)
+|+++|+.. .....+++.|+++ ++++++..+. -..+...+.+++++|+||-.
T Consensus 1 lVlGiGN~l~~DDg~G~~v~~~L~~~--~v~vi~~g~~----~~~ll~~i~~~d~viiVDA~ 56 (140)
T cd06070 1 LIIGVGNRLYGDDGFGSCLAEALEQC--GAPVFDGGLD----GFGLLSHLENYDIVIFIDVA 56 (140)
T ss_pred CEEEECchhcccCcHHHHHHHHHhhC--CCEEEECCCc----HHHHHHHHcCCCEEEEEEee
Confidence 367777766 3456677778764 5778988773 23344556678888888874
No 252
>PRK10824 glutaredoxin-4; Provisional
Probab=54.43 E-value=53 Score=26.95 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=44.2
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc-----CCeEEEEecCCCCCChHHH
Q 017513 238 GKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-----TNRLVTVEEGFPQHGVGAE 308 (370)
Q Consensus 238 g~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~-----~~~vvvvEe~~~~GGlg~~ 308 (370)
..+|+|++-| +....+..|.+.|.+.|++..++|+-. |.+ +++.+.+ |=+-|++.... .||....
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~----d~~-~~~~l~~~sg~~TVPQIFI~G~~-IGG~ddl 87 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQ----NPD-IRAELPKYANWPTFPQLWVDGEL-VGGCDIV 87 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecC----CHH-HHHHHHHHhCCCCCCeEEECCEE-EcChHHH
Confidence 4579999998 468888889999999999999998853 222 3333332 21335566544 4887654
Q ss_pred H
Q 017513 309 I 309 (370)
Q Consensus 309 i 309 (370)
.
T Consensus 88 ~ 88 (115)
T PRK10824 88 I 88 (115)
T ss_pred H
Confidence 3
No 253
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=54.37 E-value=70 Score=29.37 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhcCCceeEEEeccccCCCH--------HHHHHHHhcCCeEEEEecCCCCCChHHHHHHHH
Q 017513 250 VGLSLKAAEILAKEGISAEVINLRSIRPLDR--------STINASVRKTNRLVTVEEGFPQHGVGAEICASV 313 (370)
Q Consensus 250 ~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~--------~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l 313 (370)
...+..+++.+.++|.+++++|++-+-.++. ..+++.+...+.+|++- .-.++|+...+.+.+
T Consensus 43 ~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~T-PEYn~sipg~LKNai 113 (219)
T TIGR02690 43 RLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCS-PERHGAITGSQKDQI 113 (219)
T ss_pred HHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeC-CccccCcCHHHHHHH
Confidence 3345556667776799999999876532221 23667777777665543 334588887777665
No 254
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=53.91 E-value=31 Score=24.96 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc--CCeEEEEecCCCCCChHHH
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK--TNRLVTVEEGFPQHGVGAE 308 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~--~~~vvvvEe~~~~GGlg~~ 308 (370)
+....+.+|.+.|++.|+..+.+|+..- |-..+.+.+.... +=+.|+++.. ..||+.+.
T Consensus 8 ~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i~g~-~igg~~~~ 68 (75)
T cd03418 8 PNCPYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFIGDV-HIGGCDDL 68 (75)
T ss_pred CCChHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEECCE-EEeChHHH
Confidence 5567888899999999999999998753 1111223222222 2255777765 45887653
No 255
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=53.84 E-value=37 Score=26.86 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~ 291 (370)
.....+.+|.+.|+++|++.+.+|+.. .|.+.+.+.+.+.+.+
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~~l~~~~~~~~ 49 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLK-EPPTKEELKELLAKLG 49 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeecc-CCCCHHHHHHHHHhcC
Confidence 456778889999999999999999874 7888888888776654
No 256
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=53.66 E-value=71 Score=23.02 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=41.2
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc-CCeEEEEecCCCCCChHHHHHHHH
Q 017513 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVGAEICASV 313 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~-~~~vvvvEe~~~~GGlg~~i~~~l 313 (370)
++|.+ -+..+.+.+|.+.|++.|+..+.+|+.. .+ +.+.+.+.... +=+.|+++.. ..||.. +|.++|
T Consensus 3 v~lys-~~~Cp~C~~ak~~L~~~~i~~~~~~v~~-~~-~~~~~~~~~g~~~vP~ifi~g~-~igg~~-~l~~~l 71 (72)
T cd03029 3 VSLFT-KPGCPFCARAKAALQENGISYEEIPLGK-DI-TGRSLRAVTGAMTVPQVFIDGE-LIGGSD-DLEKYF 71 (72)
T ss_pred EEEEE-CCCCHHHHHHHHHHHHcCCCcEEEECCC-Ch-hHHHHHHHhCCCCcCeEEECCE-EEeCHH-HHHHHh
Confidence 44444 3667788889999999999999998764 22 33334332222 2245666654 458854 444443
No 257
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=53.58 E-value=38 Score=28.40 Aligned_cols=43 Identities=28% Similarity=0.241 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~ 291 (370)
.....+.+|.+-|+++|+..+++|+.. .|++.+.|.+.+++.+
T Consensus 8 ~~C~~crkA~~~L~~~~i~~~~~d~~~-~~~s~~eL~~~l~~~~ 50 (132)
T PRK13344 8 SSCTSCKKAKTWLNAHQLSYKEQNLGK-EPLTKEEILAILTKTE 50 (132)
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEECCC-CCCCHHHHHHHHHHhC
Confidence 556678888889999999999999875 7999998888887653
No 258
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=53.34 E-value=26 Score=25.85 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc-CCeEEEEecCCCCCChHHHH
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVGAEI 309 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~-~~~vvvvEe~~~~GGlg~~i 309 (370)
+....+.+|.+.|++.|+..+.+|+..- |-..+.+.+.... +=+.|+++.. ..||+.+..
T Consensus 7 ~~Cp~C~~a~~~L~~~~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~i~g~-~igg~~~~~ 67 (79)
T TIGR02181 7 PYCPYCTRAKALLSSKGVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIFIGDV-HVGGCDDLY 67 (79)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEEECCE-EEcChHHHH
Confidence 5667788899999999999999998742 2112223222221 2256777765 468887643
No 259
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=52.92 E-value=9.5 Score=30.93 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=27.0
Q ss_pred CcEEEEEechhH-HHHHHHHHHHHhcCCceeEEEec
Q 017513 239 KDVTITAFSKIV-GLSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 239 ~dv~Iia~G~~~-~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
-|++||++|... ..--+..+.|+++||.+++.|-.
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 689999999644 23345667899999999999755
No 260
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=52.60 E-value=11 Score=31.04 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=28.7
Q ss_pred eeCCcEEEEEechhH-HHHHHHHHHHHhcCCceeEEEecc
Q 017513 236 REGKDVTITAFSKIV-GLSLKAAEILAKEGISAEVINLRS 274 (370)
Q Consensus 236 ~~g~dv~Iia~G~~~-~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (370)
.+.-|++||++|... ..--+..+.|+++||.+++.+...
T Consensus 52 ~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~~ 91 (114)
T cd05125 52 EPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTRN 91 (114)
T ss_pred cCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHHH
Confidence 456789999999753 333456678899999999987543
No 261
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=52.56 E-value=53 Score=32.20 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=30.9
Q ss_pred CcccCEEEEeC-CCCCCCCCCcch---HHHH-HHHc--cCCCcEEEeeCCHHHH----HHHHHHHHhCCCCEEEEe
Q 017513 141 QISVPIVFRGP-NGAAAGVGAQHS---HCYA-AWYA--SVPGLKVLSPYSSEDA----RGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 141 ~~~~pvv~~~~-~G~~~~~G~tHs---~~~~-a~~~--~iP~~~V~~P~d~~e~----~~~l~~a~~~~~Pv~i~~ 205 (370)
..++|+++++. .+... ..+++. ..+. .... .+|++.| .-.|..++ ..+++.+.+.++|++|-.
T Consensus 170 ~~~LPvi~Vv~NN~~~~-~~~~~~~~~~~d~~~~a~a~G~~~~~V-dg~d~~av~~a~~~A~~~a~~~~gP~lIev 243 (341)
T TIGR03181 170 VFKAPVVFFVQNNQWAI-SVPRSKQTAAPTLAQKAIAYGIPGVQV-DGNDVLAVYAVTKEAVERARSGGGPTLIEA 243 (341)
T ss_pred ccCCCEEEEEECCCCcc-ccchhhhhCCcCHHHHHhhCCCCEEEE-CCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 47899999874 34211 111111 1112 2222 3555443 33344333 445555555689999853
No 262
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=52.56 E-value=95 Score=32.96 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=62.7
Q ss_pred CCcEeechh-h-HHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~GI-a-E~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.+|+..+- . =-..+..|.|++++- -|+++++.. ..|++...| ...+. ..++|++++. ..+..+
T Consensus 424 p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m~~~e--L~Ta~--------r~~lpvi~vV~NN~~~g~ 493 (616)
T PRK07418 424 PRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDASFLMNIQE--LGTLA--------QYGINVKTVIINNGWQGM 493 (616)
T ss_pred CCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEEEcchHhhhhHHH--HHHHH--------HhCCCeEEEEEECCcchH
Confidence 888886421 1 112455677777663 467776654 223332222 23344 3678887775 222111
Q ss_pred ---------C---CCCc---chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 157 ---------G---VGAQ---HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 157 ---------~---~G~t---Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
+ .+.. +..++..+-.++ |..-+.-.+++|+...++.+++.++|++|-
T Consensus 494 i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~g~~V~~~~el~~al~~a~~~~~p~lIe 555 (616)
T PRK07418 494 VRQWQESFYGERYSASNMEPGMPDFVKLAEAF-GVKGMVISERDQLKDAIAEALAHDGPVLID 555 (616)
T ss_pred HHHHHHHhcCCCceeecCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0000 111222344444 666677789999999999999988999984
No 263
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=52.29 E-value=1.1e+02 Score=32.11 Aligned_cols=112 Identities=21% Similarity=0.185 Sum_probs=64.3
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.+|+..+- +=-..+..|.|++++- -+++++... ..|++.+ |-...+. ..++|++++. ..+..+
T Consensus 420 ~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i~GDG~f~m~~--~eL~Ta~--------~~~l~~~~vV~NN~~y~~ 489 (585)
T CHL00099 420 PRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMNL--QELGTIA--------QYNLPIKIIIINNKWQGM 489 (585)
T ss_pred CCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEEEcchhhhhhH--HHHHHHH--------HhCCCeEEEEEECCcchH
Confidence 788886421 1122566778877773 355555544 2233322 2223444 3678887765 333111
Q ss_pred ---------C---CCC--c-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017513 157 ---------G---VGA--Q-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 157 ---------~---~G~--t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
+ .+. . |..++..+-+.+ |..-..-.+++|+...+..+++.++|.+|-.
T Consensus 490 i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~liev 552 (585)
T CHL00099 490 VRQWQQAFYGERYSHSNMEEGAPDFVKLAEAY-GIKGLRIKSRKDLKSSLKEALDYDGPVLIDC 552 (585)
T ss_pred HHHHHHHhcCCCcccccCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 0 010 0 111233455554 6667788999999999999999899998853
No 264
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=52.02 E-value=1.4e+02 Score=24.74 Aligned_cols=74 Identities=7% Similarity=-0.058 Sum_probs=48.1
Q ss_pred EEEEEechhHHHHHHHHHHH----HhcCCceeEEEeccc--------------cCCCHHHHHHHHh-cCCeEEEEecCCC
Q 017513 241 VTITAFSKIVGLSLKAAEIL----AKEGISAEVINLRSI--------------RPLDRSTINASVR-KTNRLVTVEEGFP 301 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L----~~~Gi~v~Vi~~~~l--------------~P~d~~~i~~~~~-~~~~vvvvEe~~~ 301 (370)
+++++.|+....+.+..+.+ ++.--+..|- ..++ .|-..+.|.+... ++++|+|+.=|..
T Consensus 3 illv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~-~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~ 81 (127)
T cd03412 3 ILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVR-WAFTSRMIRKKLKKRGIEVDTPEEALAKLAADGYTEVIVQSLHII 81 (127)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEE-EEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCEEEEEeCeeE
Confidence 78999999887766654443 3332122222 2222 5777788877766 5689999999887
Q ss_pred CCChHHHHHHHHHh
Q 017513 302 QHGVGAEICASVIE 315 (370)
Q Consensus 302 ~GGlg~~i~~~l~~ 315 (370)
.|.-...|.+.+.+
T Consensus 82 ~G~e~~di~~~v~~ 95 (127)
T cd03412 82 PGEEYEKLKREVDA 95 (127)
T ss_pred CcHHHHHHHHHHHH
Confidence 77666666666654
No 265
>cd06068 H2MP_like-1 Putative [NiFe] hydrogenase-specific C-terminal protease. Sequence comparison shows similarity to hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE (the large subunit of hydrogenases 3). This cleavage is nickel dependent.
Probab=51.72 E-value=46 Score=28.10 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=32.4
Q ss_pred EEEechhH----HHHHHHHHHHHhcCC--ceeEEEeccccCCCHHHHHHHHhcCCeEEEEecC
Q 017513 243 ITAFSKIV----GLSLKAAEILAKEGI--SAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299 (370)
Q Consensus 243 Iia~G~~~----~~al~Aa~~L~~~Gi--~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~ 299 (370)
|+++|+.. .....+++.|+++.. .++++|.-+. + .+.+.+.++.++++|+||-.
T Consensus 2 ViGiGN~l~~DDGvG~~v~~~L~~~~~~~~v~~~d~g~~-~--~~l~~~~~~~~d~viiVDA~ 61 (144)
T cd06068 2 VAGVGNIFLGDDGFGVEVARRLRPRQLPPGVRVADFGIR-G--IHLAYELLDGYDTLILVDAV 61 (144)
T ss_pred EEEECccccccCcHHHHHHHHHhccCCCCCeEEEECCCC-H--HHHHHHHHhcCCEEEEEEec
Confidence 56666655 235567777766543 3778877664 2 23233445567788888763
No 266
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=51.30 E-value=1.7e+02 Score=25.79 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=46.3
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccC--CCHHHHHHHHhcC--Ce-EEEEecCCCCC-ChHHHHHHHH
Q 017513 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRP--LDRSTINASVRKT--NR-LVTVEEGFPQH-GVGAEICASV 313 (370)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P--~d~~~i~~~~~~~--~~-vvvvEe~~~~G-Glg~~i~~~l 313 (370)
++.||+-|..+ |.+|+|...+ .+-.+-|+.+.=+| +.-+.|.+.++++ ++ +|.+|+.-..| |.|+....++
T Consensus 1 kVIlvTDGD~~--A~ravE~aa~-~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v 77 (180)
T PF14097_consen 1 KVILVTDGDEY--AKRAVEIAAK-NIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYV 77 (180)
T ss_pred CEEEEECChHH--HHHHHHHHHH-HhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHH
Confidence 36788888543 3445554432 34566666665554 6667788888765 34 46666644344 8898888888
Q ss_pred Hhh
Q 017513 314 IEE 316 (370)
Q Consensus 314 ~~~ 316 (370)
..+
T Consensus 78 ~~h 80 (180)
T PF14097_consen 78 ANH 80 (180)
T ss_pred HcC
Confidence 754
No 267
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=50.84 E-value=73 Score=26.10 Aligned_cols=63 Identities=11% Similarity=0.046 Sum_probs=45.4
Q ss_pred EEEEEechhHHH-----HHHHHHHHHhcCCceeEEEec-cccCCCHHHHHHHHhcCC-eEEEEecCCCCCC
Q 017513 241 VTITAFSKIVGL-----SLKAAEILAKEGISAEVINLR-SIRPLDRSTINASVRKTN-RLVTVEEGFPQHG 304 (370)
Q Consensus 241 v~Iia~G~~~~~-----al~Aa~~L~~~Gi~v~Vi~~~-~l~P~d~~~i~~~~~~~~-~vvvvEe~~~~GG 304 (370)
-.++++|..... ..+-.+.|.+.|...=+|... .+..+|.+.+ +.+.+.+ .++.+..+....-
T Consensus 44 Elvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i-~~A~~~~lPli~ip~~~~f~~ 113 (123)
T PF07905_consen 44 ELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEII-ELADELGLPLIEIPWEVPFSD 113 (123)
T ss_pred eEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHH-HHHHHcCCCEEEeCCCCCHHH
Confidence 456677755433 566788899999999899876 8889998865 5566665 7888888766433
No 268
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=50.32 E-value=43 Score=27.10 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcC
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT 290 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~ 290 (370)
.....+.+|.+.|+++|+..+++|+.. .|++.+.+.+.++..
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~~-~~~~~~el~~~~~~~ 49 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLFK-QPLTKEELKEILSLT 49 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecCC-CcchHHHHHHHHHHh
Confidence 556778888899999999999999864 788898888887754
No 269
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=50.21 E-value=68 Score=24.10 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHh-----cCCceeEEEeccccCCCHHHHHHHHhc---CCeEEEEecCCCCCChHHHHHHHHHh
Q 017513 248 KIVGLSLKAAEILAK-----EGISAEVINLRSIRPLDRSTINASVRK---TNRLVTVEEGFPQHGVGAEICASVIE 315 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~-----~Gi~v~Vi~~~~l~P~d~~~i~~~~~~---~~~vvvvEe~~~~GGlg~~i~~~l~~ 315 (370)
+....+.+|.+.|++ +|+....+|+.. .+...+.+.+.... +=+.|+++.. ..||+.+ +.+++.+
T Consensus 9 ~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~-~~~~~~el~~~~~~~~~~vP~ifi~g~-~igg~~~-~~~~~~~ 81 (85)
T PRK11200 9 PGCPYCVRAKELAEKLSEERDDFDYRYVDIHA-EGISKADLEKTVGKPVETVPQIFVDQK-HIGGCTD-FEAYVKE 81 (85)
T ss_pred CCChhHHHHHHHHHhhcccccCCcEEEEECCC-ChHHHHHHHHHHCCCCCcCCEEEECCE-EEcCHHH-HHHHHHH
Confidence 445566667777766 799999999885 33334456555442 2255667654 4688764 5555544
No 270
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=50.11 E-value=31 Score=25.17 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc-CCeEEEEecCCCCCChHH
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVGA 307 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~-~~~vvvvEe~~~~GGlg~ 307 (370)
.....+.+|.+.|++.|+..+.+|+.. .|-..+.+.+ ... +=++++++.....+|+..
T Consensus 7 ~~Cp~C~~ak~~L~~~~i~~~~~di~~-~~~~~~~~~~-~g~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 7 NNCVQCKMTKKALEEHGIAFEEINIDE-QPEAIDYVKA-QGFRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEECCC-CHHHHHHHHH-cCCcccCEEEECCCcEEeccCH
Confidence 445677888888999999999999875 2222222322 121 225677754434566653
No 271
>PRK12559 transcriptional regulator Spx; Provisional
Probab=49.25 E-value=54 Score=27.41 Aligned_cols=42 Identities=19% Similarity=0.155 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcC
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT 290 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~ 290 (370)
..+..+.+|.+.|+++|+..+.+|+.. .|++.+.|.+.++.+
T Consensus 8 ~~C~~crkA~~~L~~~gi~~~~~di~~-~~~s~~el~~~l~~~ 49 (131)
T PRK12559 8 ASCASCRKAKAWLEENQIDYTEKNIVS-NSMTVDELKSILRLT 49 (131)
T ss_pred CCChHHHHHHHHHHHcCCCeEEEEeeC-CcCCHHHHHHHHHHc
Confidence 445677888889999999999999875 799999888888763
No 272
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=49.21 E-value=31 Score=27.82 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~ 291 (370)
.....+.+|.+.|+++|+..+.+|+.. .|...+.|.+.+++.+
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~~~~~~~ 49 (111)
T cd03036 7 PKCSTCRKAKKWLDEHGVDYTAIDIVE-EPPSKEELKKWLEKSG 49 (111)
T ss_pred CCCHHHHHHHHHHHHcCCceEEecccC-CcccHHHHHHHHHHcC
Confidence 455678888889999999999999875 6888888877776543
No 273
>PTZ00089 transketolase; Provisional
Probab=49.19 E-value=1.7e+02 Score=31.51 Aligned_cols=73 Identities=12% Similarity=0.164 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhccccCCCCcccC-EEEEe-CCCCCCCCCCcc---hHHHHHHHccCCCcEEEeeC----CHHHHHHHHH
Q 017513 122 QAIDHIINSAAKSNYMSSGQISVP-IVFRG-PNGAAAGVGAQH---SHCYAAWYASVPGLKVLSPY----SSEDARGLLK 192 (370)
Q Consensus 122 ra~dqi~~~~a~~~~~~~g~~~~p-vv~~~-~~G~~~~~G~tH---s~~~~a~~~~iP~~~V~~P~----d~~e~~~~l~ 192 (370)
.+||.+. .++ ..++| ++++. ..+.+ -+|+++ .......++++ ||.++.+. |..++..++.
T Consensus 164 ~~~EAl~-~A~--------~~~L~nLi~i~d~N~~~-i~~~~~~~~~~~~~~~f~a~-G~~~i~v~dG~~D~~~l~~a~~ 232 (661)
T PTZ00089 164 VSQEALS-LAG--------HLGLEKLIVLYDDNKIT-IDGNTDLSFTEDVEKKYEAY-GWHVIEVDNGNTDFDGLRKAIE 232 (661)
T ss_pred HHHHHHH-HHH--------HhCCCCEEEEEECCCcc-cccCcccccCccHHHHHHhc-CCcEEEeCCCCCCHHHHHHHHH
Confidence 5666654 344 35776 55554 33321 123333 22224677777 99999984 6777777787
Q ss_pred HHHhC-CCCEEEEe
Q 017513 193 AAIRD-PDPVVFLE 205 (370)
Q Consensus 193 ~a~~~-~~Pv~i~~ 205 (370)
.+.+. ++|++|..
T Consensus 233 ~a~~~~~~P~~I~~ 246 (661)
T PTZ00089 233 EAKKSKGKPKLIIV 246 (661)
T ss_pred HHHhcCCCcEEEEE
Confidence 77765 68999864
No 274
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=48.98 E-value=27 Score=28.90 Aligned_cols=76 Identities=14% Similarity=0.103 Sum_probs=45.9
Q ss_pred EEEeeCCHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCcccccCCCcccc---cCceEEeeeCCcEEEEEechhHHHH
Q 017513 177 KVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLP---IGKAKIEREGKDVTITAFSKIVGLS 253 (370)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~---~Gk~~vl~~g~dv~Iia~G~~~~~a 253 (370)
.|+.|.+.+|+..++++|.+++.|+.++-...-+. . .....+..-+. +.+...+.+....+.+..|......
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~-~----~~~~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l 77 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWT-G----QSSDEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDL 77 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSS-S----TTSSTTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc-c----ccccCCcEEEeeccccccccccccceeEEEeccccchhc
Confidence 58999999999999999999999999974311000 0 00001111111 2222233445677778888887765
Q ss_pred HHHH
Q 017513 254 LKAA 257 (370)
Q Consensus 254 l~Aa 257 (370)
.+..
T Consensus 78 ~~~l 81 (139)
T PF01565_consen 78 YEAL 81 (139)
T ss_dssp HHHH
T ss_pred cccc
Confidence 5533
No 275
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=48.73 E-value=1.2e+02 Score=30.15 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=18.6
Q ss_pred CeEEEEecCCCCCChHHHHHHHHHhhcc
Q 017513 291 NRLVTVEEGFPQHGVGAEICASVIEESF 318 (370)
Q Consensus 291 ~~vvvvEe~~~~GGlg~~i~~~l~~~~~ 318 (370)
.+|+++ + .||+|+.++..|...|+
T Consensus 136 ~~Vlvv--G--~GG~Gs~ia~~La~~Gv 159 (376)
T PRK08762 136 ARVLLI--G--AGGLGSPAALYLAAAGV 159 (376)
T ss_pred CcEEEE--C--CCHHHHHHHHHHHHcCC
Confidence 367666 3 49999999999987664
No 276
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=48.68 E-value=45 Score=28.74 Aligned_cols=55 Identities=24% Similarity=0.251 Sum_probs=34.8
Q ss_pred cEEEEEechhH----HHHHHHHHHHHhcCC-ceeEEEeccccCCCHHHHHHHHh--cCCeEEEEec
Q 017513 240 DVTITAFSKIV----GLSLKAAEILAKEGI-SAEVINLRSIRPLDRSTINASVR--KTNRLVTVEE 298 (370)
Q Consensus 240 dv~Iia~G~~~----~~al~Aa~~L~~~Gi-~v~Vi~~~~l~P~d~~~i~~~~~--~~~~vvvvEe 298 (370)
+++|+++|+.. .....+++.|++... +++++|..+ -|++.-. .+. +.+++|+||-
T Consensus 2 ~~lVlGiGN~L~gDDGvG~~v~~~L~~~~~~~v~vid~gt-~~~~~~~---~i~~~~~d~vIiVDA 63 (156)
T PRK11544 2 TDVVLTVGNSMMGDDGAGPLLAEKLAAAPKGGWVVIDGGS-APENDIV---AIRELRPERLLIVDA 63 (156)
T ss_pred cEEEEEeCccccccCcHHHHHHHHHhccCCCCeEEEECCC-CHHHHHH---HHHhcCCCEEEEEEC
Confidence 36788888776 335567777765422 578888888 3443332 233 3577888885
No 277
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=47.67 E-value=1.4e+02 Score=31.47 Aligned_cols=111 Identities=19% Similarity=0.181 Sum_probs=61.7
Q ss_pred CCcEeechh-hH-HHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDTPI-TE-AGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~GI-aE-~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
|.+|+..+- .= -..+..|.|++++. -|+++.+.. ..|.+- ...+. .+. ..++|++++. ..+..+
T Consensus 425 p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i~GDG~f~~~-~~el~-Ta~--------~~~lpv~ivV~NN~~y~~ 494 (588)
T PRK07525 425 GRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWGIS-MNEVM-TAV--------RHNWPVTAVVFRNYQWGA 494 (588)
T ss_pred CCeEEccccccccccHHHHHHHHHHhCCCCcEEEEEcCchHhcc-HHHHH-HHH--------HhCCCeEEEEEeCchhHH
Confidence 788886531 11 12566777877774 467766654 223332 22232 343 4688887776 332211
Q ss_pred ---------C---CCCcchH--HHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC---CCCEEEE
Q 017513 157 ---------G---VGAQHSH--CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD---PDPVVFL 204 (370)
Q Consensus 157 ---------~---~G~tHs~--~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~---~~Pv~i~ 204 (370)
+ .+..... ++.++-+.+ |..-..-.++.|+...++.+++. ++|++|-
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lIe 558 (588)
T PRK07525 495 EKKNQVDFYNNRFVGTELDNNVSYAGIAEAM-GAEGVVVDTQEELGPALKRAIDAQNEGKTTVIE 558 (588)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 1 1111111 222333333 45555668999999999999975 4899874
No 278
>PRK07308 flavodoxin; Validated
Probab=47.54 E-value=1.7e+02 Score=24.45 Aligned_cols=81 Identities=10% Similarity=0.076 Sum_probs=44.6
Q ss_pred echhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhc-cCCCCCC
Q 017513 246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEES-FGYLDAP 324 (370)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~-~~~l~~~ 324 (370)
+|++-..|...++.|++.|+.+.+.++....+ + .+.+.+.|++.=-.+-.|-+-..+..++.... ...-+.+
T Consensus 12 tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~---~----~l~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~~l~~k~ 84 (146)
T PRK07308 12 TGNTEEIADIVADKLRELGHDVDVDECTTVDA---S----DFEDADIAIVATYTYGDGELPDEIVDFYEDLADLDLSGKI 84 (146)
T ss_pred CchHHHHHHHHHHHHHhCCCceEEEecccCCH---h----HhccCCEEEEEeCccCCCCCCHHHHHHHHHHhcCCCCCCE
Confidence 34555556666667778899999988775432 2 24456666554333322445555666554321 1101345
Q ss_pred EEEEecCCC
Q 017513 325 VERIAGADV 333 (370)
Q Consensus 325 ~~~ig~~d~ 333 (370)
+.-+|.-|.
T Consensus 85 ~~vfG~Gd~ 93 (146)
T PRK07308 85 YGVVGSGDT 93 (146)
T ss_pred EEEEeeCCC
Confidence 666777654
No 279
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=47.30 E-value=38 Score=27.48 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=36.1
Q ss_pred chhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC
Q 017513 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~ 291 (370)
-.....+.+|.+.|+++|+..+++|+.. .|...+.+.+.++..+
T Consensus 6 ~~~C~~c~ka~~~L~~~~i~~~~idi~~-~~~~~~el~~l~~~~~ 49 (117)
T TIGR01617 6 SPNCTTCKKARRWLEANGIEYQFIDIGE-DGPTREELLDILSLLE 49 (117)
T ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCC-ChhhHHHHHHHHHHcC
Confidence 3566778889999999999999999864 7888888888877665
No 280
>PLN02409 serine--glyoxylate aminotransaminase
Probab=46.87 E-value=62 Score=32.20 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=27.5
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHh
Q 017513 236 REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR 288 (370)
Q Consensus 236 ~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~ 288 (370)
++|.++++...|....... +.++..|.++.++....=..+|.+.|.+.+.
T Consensus 82 ~~Gd~Vlv~~~~~~~~~~~---~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~ 131 (401)
T PLN02409 82 SPGDKVVSFRIGQFSLLWI---DQMQRLNFDVDVVESPWGQGADLDILKSKLR 131 (401)
T ss_pred CCCCEEEEeCCCchhHHHH---HHHHHcCCceEEEECCCCCCCCHHHHHHHHh
Confidence 4555666666666543322 2334447777766654323456666766665
No 281
>TIGR00130 frhD coenzyme F420-reducing hydrogenase delta subunit (putative coenzyme F420 hydrogenase processing subunit). FrhD is not part of the active FRH heterotrimer, but is probably a protease required for maturation. Alternative name: 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) subunit delta.
Probab=46.81 E-value=44 Score=28.65 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=37.1
Q ss_pred CcEEEEEechhHH----HHHHHHHHHHhcC----CceeEEEeccccCCCHHHHHHHHhcCCeEEEEecC
Q 017513 239 KDVTITAFSKIVG----LSLKAAEILAKEG----ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299 (370)
Q Consensus 239 ~dv~Iia~G~~~~----~al~Aa~~L~~~G----i~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~ 299 (370)
.+++|+++|+... ....+++.|++.+ -+++++|..+.-|-....+. .+.+.+++|+||--
T Consensus 3 ~~ilVlGiGN~l~gDDGvG~~v~~~L~~~~~~~~~~v~vid~gt~~~~~l~~~~-~~~~~d~vIivDA~ 70 (153)
T TIGR00130 3 HEILVVGCGNILFGDDGFGPAVIEYLKENGVEKPDNVCLIDAGTGAPHFVFTLI-PQSKWKKIIVVDIA 70 (153)
T ss_pred ceEEEEEeCccccccCcHhHHHHHHHHHhCCCCCCCeEEEECCCcHHHHHHHHh-hhcCCCEEEEEEcc
Confidence 4688999998773 3567788886432 24888887764332111111 24567888888863
No 282
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=46.00 E-value=26 Score=30.70 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEe
Q 017513 253 SLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVE 297 (370)
Q Consensus 253 al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvE 297 (370)
..++++.|+++|+.+-.|-+ ..++.+.|++...+.++++.+.
T Consensus 123 ~~~~a~~l~~~gv~i~~vgv---~~~~~~~L~~iA~~~~~~f~~~ 164 (185)
T cd01474 123 PEHEAKLSRKLGAIVYCVGV---TDFLKSQLINIADSKEYVFPVT 164 (185)
T ss_pred hHHHHHHHHHcCCEEEEEee---chhhHHHHHHHhCCCCeeEecC
Confidence 44567788889987777765 5678888888777767766343
No 283
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=45.67 E-value=17 Score=29.53 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=26.5
Q ss_pred CCcEEEEEechhH-HHHHHHHHHHHhcCCceeEEEec
Q 017513 238 GKDVTITAFSKIV-GLSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 238 g~dv~Iia~G~~~-~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
..+++||++|... ..--+..+.|+++||.+++.|-.
T Consensus 52 ~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T~ 88 (109)
T cd05560 52 QPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDTQ 88 (109)
T ss_pred CCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECHH
Confidence 4689999999543 22344556799999999998754
No 284
>TIGR00142 hycI hydrogenase maturation protease HycI. Hydrogenase maturation protease is a protease that is involved in the C-terminal processing of HycE,the large subunit of hydrogenase 3 from E.Coli. This protein seems to be found in E.Coli and in Archaea.
Probab=45.27 E-value=51 Score=27.95 Aligned_cols=55 Identities=15% Similarity=0.095 Sum_probs=29.5
Q ss_pred EEEEechhHH----HHHHHHHHHHhcCC--ceeEEEeccccCCCHHHHHHHHhcCCeEEEEec
Q 017513 242 TITAFSKIVG----LSLKAAEILAKEGI--SAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (370)
Q Consensus 242 ~Iia~G~~~~----~al~Aa~~L~~~Gi--~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe 298 (370)
+|+++|+... ....+++.|++... ++.++|.-+. |++...+.+. .+++++++||-
T Consensus 2 lVlGiGN~l~~DDG~G~~v~~~L~~~~~~~~v~v~d~gt~-~~~~~~~~~~-~~~d~viivDA 62 (146)
T TIGR00142 2 VLLCVGNELMGDDGAGPYLAEKCAAAPKEENWVVINAGTV-PENFTVAIRE-LRPTHILIVDA 62 (146)
T ss_pred EEEEeCccccccCcHHHHHHHHHHhccCCCCEEEEECCCC-hHHHHHHHHh-cCCCEEEEEEC
Confidence 5677776652 24556666765432 4667777765 4333221111 13567777775
No 285
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=44.95 E-value=1.3e+02 Score=24.85 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCC
Q 017513 254 LKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300 (370)
Q Consensus 254 l~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~ 300 (370)
-.|++.|++.||+++ +..+ ++..+.+ ...+.||++++..
T Consensus 44 ~~a~~~l~~~Gid~~--~~~~--~l~~~~~----~~~DlIv~m~~~~ 82 (140)
T smart00226 44 PRAVEVLKEHGIALS--HHAS--QLTSSDF----KNADLVLAMDHSH 82 (140)
T ss_pred HHHHHHHHHcCcCcc--ceec--cCCHHHH----HhCCEEEEeCHHH
Confidence 357777888899876 3222 6766544 4578899998754
No 286
>PRK06703 flavodoxin; Provisional
Probab=44.94 E-value=73 Score=26.83 Aligned_cols=80 Identities=5% Similarity=-0.045 Sum_probs=41.5
Q ss_pred chhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhc-cCCCCCCE
Q 017513 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEES-FGYLDAPV 325 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~-~~~l~~~~ 325 (370)
|++-..|...++.|++.|+++.+.++....+ + .+.+++.|++.=-.+..|-+...+..++.... ...-+.++
T Consensus 13 GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~---~----~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~ 85 (151)
T PRK06703 13 GNTEDIADLIKVSLDAFDHEVVLQEMDGMDA---E----ELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKV 85 (151)
T ss_pred chHHHHHHHHHHHHHhcCCceEEEehhhCCH---H----HHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEE
Confidence 3444455555666777799999998876432 1 24556666654422223445544554443211 01112355
Q ss_pred EEEecCCC
Q 017513 326 ERIAGADV 333 (370)
Q Consensus 326 ~~ig~~d~ 333 (370)
.-+|.-+.
T Consensus 86 ~vfg~g~~ 93 (151)
T PRK06703 86 AVFGSGDT 93 (151)
T ss_pred EEEccCCC
Confidence 56665443
No 287
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=44.47 E-value=81 Score=33.17 Aligned_cols=112 Identities=19% Similarity=0.203 Sum_probs=63.3
Q ss_pred CCCcEeechhh-H-HHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC
Q 017513 82 GPERVLDTPIT-E-AGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA 156 (370)
Q Consensus 82 ~p~r~~~~GIa-E-~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~ 156 (370)
.|.+|+..|-- - -..+..|+|++++- -|+++++.. ..|++...| ...+. +.++|++++. ..|..+
T Consensus 397 ~p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i~GDG~F~m~~qE--L~Ta~--------r~~lpv~ivv~nN~~~g 466 (550)
T COG0028 397 RPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQE--LETAV--------RYGLPVKIVVLNNGGYG 466 (550)
T ss_pred CCCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEEEcccHHhccHHH--HHHHH--------HhCCCEEEEEEECCccc
Confidence 37888886321 1 12344556666653 367777754 234333222 23344 3567887775 333221
Q ss_pred ---------CCCC-c--c-hHH-HHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 157 ---------GVGA-Q--H-SHC-YAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 157 ---------~~G~-t--H-s~~-~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
..+. + + ... +..+-.+ -|+.-+.-.+++|+...++.|+..++|++|-
T Consensus 467 ~v~~~q~~~~~~~~~~~~~~~~~f~klAea-~G~~g~~v~~~~el~~al~~al~~~~p~lid 527 (550)
T COG0028 467 MVRQWQELFYGGRYSGTDLGNPDFVKLAEA-YGAKGIRVETPEELEEALEEALASDGPVLID 527 (550)
T ss_pred cchHHHHHhcCCCcceeecCCccHHHHHHH-cCCeeEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0111 1 1 111 2222233 3677778889999999999999999998884
No 288
>PRK10638 glutaredoxin 3; Provisional
Probab=44.02 E-value=54 Score=24.56 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=37.5
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc-CCeEEEEecCCCCCChHH
Q 017513 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVGA 307 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~-~~~vvvvEe~~~~GGlg~ 307 (370)
++|.+. .....+.+|.+.|+++|+..+++|+..-... .+.+.+.-.. +=+.|+++. ...||+.+
T Consensus 4 v~ly~~-~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~-~~~l~~~~g~~~vP~i~~~g-~~igG~~~ 68 (83)
T PRK10638 4 VEIYTK-ATCPFCHRAKALLNSKGVSFQEIPIDGDAAK-REEMIKRSGRTTVPQIFIDA-QHIGGCDD 68 (83)
T ss_pred EEEEEC-CCChhHHHHHHHHHHcCCCcEEEECCCCHHH-HHHHHHHhCCCCcCEEEECC-EEEeCHHH
Confidence 444442 4456788888899999999999988531111 1223322221 124566654 55688854
No 289
>PLN02573 pyruvate decarboxylase
Probab=43.79 E-value=1.6e+02 Score=31.11 Aligned_cols=112 Identities=12% Similarity=-0.010 Sum_probs=61.2
Q ss_pred CCcEeechh-h-HHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC-
Q 017513 83 PERVLDTPI-T-EAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA- 156 (370)
Q Consensus 83 p~r~~~~GI-a-E~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~- 156 (370)
+.+|+..+- . =-..+..|+|++++- -|+++.... ..|.+-+ |-...++ +.++|++++. ..|..+
T Consensus 418 ~~~~~~~~~~gsmG~glpaaiGa~lA~p~r~vv~i~GDG~f~m~~--~EL~Ta~--------r~~lpvv~vV~NN~~yg~ 487 (578)
T PLN02573 418 GCGYEFQMQYGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTA--QDVSTMI--------RCGQKSIIFLINNGGYTI 487 (578)
T ss_pred CCeEEeecchhhhhhhhhHHHHHHHhCCCCceEEEEeccHHHhHH--HHHHHHH--------HcCCCCEEEEEeCCceeE
Confidence 456665442 1 122455666766662 355555544 2233332 2223455 4688887776 333221
Q ss_pred ----CC---CCcchHHHHHHHccCC---C-cEEEeeCCHHHHHHHHHHHHh--CCCCEEEE
Q 017513 157 ----GV---GAQHSHCYAAWYASVP---G-LKVLSPYSSEDARGLLKAAIR--DPDPVVFL 204 (370)
Q Consensus 157 ----~~---G~tHs~~~~a~~~~iP---~-~~V~~P~d~~e~~~~l~~a~~--~~~Pv~i~ 204 (370)
.. +..+..++.++-+.+- | ..-..-.+..|+...++.++. .++|.+|-
T Consensus 488 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p~lie 548 (578)
T PLN02573 488 EVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKDCLCFIE 548 (578)
T ss_pred EEeecccCccccCCCCHHHHHHHhcCcCCceeEEEecCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 00 1111112334444442 3 677788899999999999985 58899884
No 290
>PRK09004 FMN-binding protein MioC; Provisional
Probab=43.74 E-value=1.9e+02 Score=24.38 Aligned_cols=82 Identities=11% Similarity=0.056 Sum_probs=45.6
Q ss_pred EEEechhHHHHHHHHHHH----HhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHH---HHHHHHh
Q 017513 243 ITAFSKIVGLSLKAAEIL----AKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAE---ICASVIE 315 (370)
Q Consensus 243 Iia~G~~~~~al~Aa~~L----~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~---i~~~l~~ 315 (370)
.|-||+....+.+.|+.| ++.|+++.++++.. .+ .+.+.+.++++=-.+-.|-+-.. +.+.|.+
T Consensus 5 ~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~-----~~----~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~ 75 (146)
T PRK09004 5 TLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPL-----LD----DLSASGLWLIVTSTHGAGDLPDNLQPFFEELQE 75 (146)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCC-----HH----HhccCCeEEEEECCCCCCCCChhHHHHHHHHHh
Confidence 445788877777766555 56699999887532 22 24456677776655545544333 3333333
Q ss_pred hccCCCCCCEEEEecCCC
Q 017513 316 ESFGYLDAPVERIAGADV 333 (370)
Q Consensus 316 ~~~~~l~~~~~~ig~~d~ 333 (370)
.....-+.++--+|+-|.
T Consensus 76 ~~~~l~g~~~aVfGlGds 93 (146)
T PRK09004 76 QKPDLSQVRFAAIGIGSS 93 (146)
T ss_pred cCCCCCCCEEEEEeecCC
Confidence 211111245666776665
No 291
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=43.11 E-value=2.4e+02 Score=26.56 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=50.9
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEE-----EecCCCCCChHHHHHHHHHh
Q 017513 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVT-----VEEGFPQHGVGAEICASVIE 315 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvv-----vEe~~~~GGlg~~i~~~l~~ 315 (370)
-++++-+....+-..-++.|.+.||++.+|--. .+...+.+.++|++ +.++....-.|+.....++.
T Consensus 111 ~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~Ds--------a~~~~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~ 182 (253)
T PRK06372 111 SVYILESRPMLEGIDMAKLLVKSGIDVVLLTDA--------SMCEAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCAR 182 (253)
T ss_pred EEEEecCCCchHHHHHHHHHHHCCCCEEEEehh--------HHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHH
Confidence 445566666666667888899999999888433 23344666777665 33333333356665655554
Q ss_pred hccCCCCCCEEEEecCCCCC
Q 017513 316 ESFGYLDAPVERIAGADVPM 335 (370)
Q Consensus 316 ~~~~~l~~~~~~ig~~d~~~ 335 (370)
+ .+.|+.-++....+.
T Consensus 183 ~----~~vPv~V~~~s~Kf~ 198 (253)
T PRK06372 183 Y----LKKPFYSLTISMKIE 198 (253)
T ss_pred H----cCCCEEEEeeccccC
Confidence 3 256887666655554
No 292
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=42.89 E-value=56 Score=34.34 Aligned_cols=112 Identities=16% Similarity=0.083 Sum_probs=62.1
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEcccchHH--HHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCC
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFS--MQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAA 156 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~~~f~--~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~ 156 (370)
|.+|+..+- +=-..+++|.|++++. -++++.+.. +.. +-+.++..+.+. ..++|++++. ..+..+
T Consensus 420 ~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~i~G-DG~f~~~~~e~~l~ta~--------~~~l~~~ivv~NN~~yg 490 (569)
T PRK08327 420 PGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVG-DGSFIFGVPEAAHWVAE--------RYGLPVLVVVFNNGGWL 490 (569)
T ss_pred CCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEEEec-CcceeecCcHHHHHHHH--------HhCCCEEEEEEeCcccc
Confidence 677887542 3345567777777763 466666644 332 223344333444 3578887775 332111
Q ss_pred ----------CCC------Cc----c-hHHH-HHHHccCCCcEEEeeCCHHHHHHHHHHHHhC----CCCEEEE
Q 017513 157 ----------GVG------AQ----H-SHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRD----PDPVVFL 204 (370)
Q Consensus 157 ----------~~G------~t----H-s~~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~----~~Pv~i~ 204 (370)
+.| .. . ...+ .++..++ |.....-.+++|+...++.+++. ++|++|-
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~gp~lie 563 (569)
T PRK08327 491 AVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAF-GGYGERVEDPEELKGALRRALAAVRKGRRSAVLD 563 (569)
T ss_pred cchhHHhhhCcccccccccccccccCCCCCCHHHHHHhC-CCCceEeCCHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 111 01 0 1122 2344443 33445557999999999999875 6799884
No 293
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=42.87 E-value=99 Score=27.57 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhcCCceeEEEeccccCC----------CHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHH
Q 017513 251 GLSLKAAEILAKEGISAEVINLRSIRPL----------DRSTINASVRKTNRLVTVEEGFPQHGVGAEICASV 313 (370)
Q Consensus 251 ~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~----------d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l 313 (370)
..+..+++.|+++|.+++++|+..+.+- +.+.+.+.+...+.+|++=-- ..|++...+..++
T Consensus 18 ~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~-Y~~s~pg~LKn~i 89 (191)
T PRK10569 18 ALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPV-YKASFSGALKTLL 89 (191)
T ss_pred HHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCc-cCCCCCHHHHHHH
Confidence 3445566778888999999998865431 222455667777776665433 3588888777666
No 294
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=41.85 E-value=1.1e+02 Score=26.94 Aligned_cols=88 Identities=16% Similarity=0.079 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhCCCCEEEEecccccC---CCCCCcccccCC-CcccccCceEEeeeCCcEEEEEechhHHHHHHHHHH
Q 017513 184 SEDARGLLKAAIRDPDPVVFLENELLYG---ESFPVSAEVLDS-SFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEI 259 (370)
Q Consensus 184 ~~e~~~~l~~a~~~~~Pv~i~~~~~l~~---~~~~~~~~~~~~-~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~ 259 (370)
-+|+.+++-+|+-.++-|||---..+.. ........++.. .+.-..++...+.+-..|+|++-.+.-..+.+.+++
T Consensus 24 iedaARlLAQA~vgeG~IYi~G~~Em~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~~a~~ 103 (172)
T PF10740_consen 24 IEDAARLLAQAIVGEGTIYIYGFGEMEAVEAEALYGAEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAVALAKQ 103 (172)
T ss_dssp HHHHHHHHHHHHHTT--EEEEE-GGGGGGHHHHHCSTT--TTEEE--TT--------TT-EEEEEES-S--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEEecChHHHHHHHHHcCCCCCchhhcCcccccccccccccceEEEEeCCCCCHHHHHHHHH
Confidence 4688889999999999999952211100 000000000000 000011122334555679999999999999999999
Q ss_pred HHhcCCceeEEE
Q 017513 260 LAKEGISAEVIN 271 (370)
Q Consensus 260 L~~~Gi~v~Vi~ 271 (370)
|.++|+.+-+|.
T Consensus 104 L~~~gi~~v~Vs 115 (172)
T PF10740_consen 104 LIEQGIPFVGVS 115 (172)
T ss_dssp HHHHT--EEEEE
T ss_pred HHHCCCCEEEEE
Confidence 999999998887
No 295
>PRK08105 flavodoxin; Provisional
Probab=41.11 E-value=97 Score=26.36 Aligned_cols=84 Identities=13% Similarity=0.042 Sum_probs=45.2
Q ss_pred EEEechhHHHHHHHHHHH----HhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHH---HHHh
Q 017513 243 ITAFSKIVGLSLKAAEIL----AKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICA---SVIE 315 (370)
Q Consensus 243 Iia~G~~~~~al~Aa~~L----~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~---~l~~ 315 (370)
.|-||+....+.+.|+.| ++.|+++.|+++..+.++. ..+.+.+|++=..+-.|-+-..... .+.+
T Consensus 5 ~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~~~~-------~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~ 77 (149)
T PRK08105 5 GIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSDWQ-------PYQDELVLVVTSTTGQGDLPDSIVPLFQALKD 77 (149)
T ss_pred EEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCCchh-------cccCCeEEEEECCCCCCCCChhHHHHHHHHHh
Confidence 455777777777666554 5669999999876543221 1234566666655544544443333 3332
Q ss_pred hccCCCCCCEEEEecCCC
Q 017513 316 ESFGYLDAPVERIAGADV 333 (370)
Q Consensus 316 ~~~~~l~~~~~~ig~~d~ 333 (370)
....--+.++--+|+-|.
T Consensus 78 ~~~~l~~~~~avfGlGds 95 (149)
T PRK08105 78 TAGYQPNLRYGVIALGDS 95 (149)
T ss_pred cCcccCCCEEEEEeeecC
Confidence 200001234556666664
No 296
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=40.40 E-value=1e+02 Score=26.81 Aligned_cols=51 Identities=20% Similarity=0.150 Sum_probs=36.4
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHH--HHHHhcCC
Q 017513 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTI--NASVRKTN 291 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i--~~~~~~~~ 291 (370)
+++++.|+.-..++-++..|.++|++|.|+-+.-..+++.+.- .+.+++.+
T Consensus 29 ~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g 81 (169)
T PF03853_consen 29 LILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMG 81 (169)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT
T ss_pred EEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcC
Confidence 5677888999999999999999999999966655556666532 23344444
No 297
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=39.64 E-value=73 Score=30.60 Aligned_cols=99 Identities=21% Similarity=0.183 Sum_probs=54.6
Q ss_pred HHHHHHHhcc----CCeeEEEcccchHH---HHHHHHHHHHhhhccccCCCCcccCEEEEeC-C--CCCCCCCCcch---
Q 017513 97 TGIGVGAAYY----GLKPVVEFMTFNFS---MQAIDHIINSAAKSNYMSSGQISVPIVFRGP-N--GAAAGVGAQHS--- 163 (370)
Q Consensus 97 v~~A~GlA~~----G~rp~~~t~~~~f~---~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~--G~~~~~G~tHs--- 163 (370)
+..|+|.|++ |.+.++..++.+.. ...+|-+ |-++ ..++||++++. . |.++....+.+
T Consensus 107 ~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~Eal-N~A~--------~~~lPvifvveNN~~aist~~~~~~~~~~ 177 (300)
T PF00676_consen 107 VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEAL-NLAA--------LWKLPVIFVVENNQYAISTPTEEQTASPD 177 (300)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHH-HHHH--------HTTTSEEEEEEEESEETTEEHHHHCSSST
T ss_pred CccccchhHhhhhcCCceeEEEEecCcccccCccHHHH-HHHh--------hccCCeEEEEecCCcccccCccccccccc
Confidence 3444454444 66666666555554 2334544 3333 36899999983 2 33322100011
Q ss_pred HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC----CCCEEEEe
Q 017513 164 HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD----PDPVVFLE 205 (370)
Q Consensus 164 ~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~----~~Pv~i~~ 205 (370)
..+.+..-.+|++ .+.=.|+.++...++.|+++ .+|++|-.
T Consensus 178 ~~~~a~~~gip~~-~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~ 222 (300)
T PF00676_consen 178 IADRAKGYGIPGI-RVDGNDVEAVYEAAKEAVEYARAGKGPVLIEA 222 (300)
T ss_dssp SGGGGGGTTSEEE-EEETTSHHHHHHHHHHHHHHHHTTT--EEEEE
T ss_pred hhhhhhccCCcEE-EECCEeHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1111233357765 45788999999999988863 68999853
No 298
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=39.46 E-value=67 Score=26.77 Aligned_cols=43 Identities=28% Similarity=0.209 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcC
Q 017513 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT 290 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~ 290 (370)
-.....+.+|.+.|+++||..+.+|+.. .|.+.+.+.+.++..
T Consensus 7 ~~~C~~C~ka~~~L~~~gi~~~~idi~~-~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 7 SPSCTSCRKAKAWLEEHDIPFTERNIFS-SPLTIDEIKQILRMT 49 (131)
T ss_pred CCCChHHHHHHHHHHHcCCCcEEeeccC-ChhhHHHHHHHHHHh
Confidence 3566778889999999999999999864 788888888777765
No 299
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=39.18 E-value=90 Score=31.58 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=38.2
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHh-cCCeEEEEec
Q 017513 239 KDVTITAFSK-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEE 298 (370)
Q Consensus 239 ~dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~-~~~~vvvvEe 298 (370)
.|+.|+..+. ....|++.++.|+++|+++++ +... +++ .+.++.+-+ +...++++-+
T Consensus 326 ~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~vei-d~~~-~~l-~k~~k~A~~~~~~~viiiG~ 384 (430)
T CHL00201 326 IDVYIATQGLKAQKKGWEIIQFLEKQNIKFEL-DLSS-SNF-HKQIKQAGKKRAKACIILGD 384 (430)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEE-eeCC-CCH-HHHHHHHHHcCCCEEEEEec
Confidence 4688888775 456789999999999999887 4432 344 333543332 3456777776
No 300
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=39.07 E-value=4.7e+02 Score=27.23 Aligned_cols=118 Identities=17% Similarity=0.158 Sum_probs=70.5
Q ss_pred HHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--
Q 017513 79 EKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA-- 155 (370)
Q Consensus 79 ~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~-- 155 (370)
++- -=||+++= .||+++-.|-.++.- |..-++..-+...+.-++--+.|.- ++.-|+++++.+...
T Consensus 48 qal-GIk~I~~R-nEqaA~yAA~A~gyLt~kpGV~lVvsGPGl~hal~gv~NA~---------~n~wPll~IgGsa~~~~ 116 (571)
T KOG1185|consen 48 QAL-GIKFIGTR-NEQAAVYAASAYGYLTGKPGVLLVVSGPGLTHALAGVANAQ---------MNCWPLLLIGGSASTLL 116 (571)
T ss_pred HHc-CCeEeecc-cHHHHHHHHHHhhhhcCCCeEEEEecCChHHHHHHHhhhhh---------hccCcEEEEecccchhh
Confidence 344 47889887 899998888877765 4433433334445555555555432 245598888522111
Q ss_pred CCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEeccc
Q 017513 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENEL 208 (370)
Q Consensus 156 ~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~ 208 (370)
-+-|..+..+-..++|..-. -+..|.+..+.-..++.|++ .++|+|+-.|-.
T Consensus 117 ~~rGafQe~dQvel~rp~~K-~~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~P~d 173 (571)
T KOG1185|consen 117 ENRGAFQELDQVELFRPLCK-FVARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDLPAD 173 (571)
T ss_pred hcccccccccHHhhhhhhhh-hccCCCChhhccHHHHHHHHHHhcCCCCceEEecccc
Confidence 12345442111356665432 36678888887777777776 379999976654
No 301
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=38.97 E-value=91 Score=29.86 Aligned_cols=67 Identities=21% Similarity=0.294 Sum_probs=40.0
Q ss_pred ccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHH
Q 017513 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDI 352 (370)
Q Consensus 273 ~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I 352 (370)
|+++-|-.+..++ +.++ +|+++ + .||+|.+++..|.-.|+ .++.+.|.-.-....|.+.+.++.++|
T Consensus 4 RQl~~~G~eaq~k-L~~s-~VLIv--G--~gGLG~EiaKnLalaGV-------g~itI~D~d~ve~snL~rqf~~~~~dI 70 (286)
T cd01491 4 RQLYVLGHEAMKK-LQKS-NVLIS--G--LGGLGVEIAKNLILAGV-------KSVTLHDTKPCSWSDLSSQFYLREEDI 70 (286)
T ss_pred cceeccCHHHHHH-HhcC-cEEEE--c--CCHHHHHHHHHHHHcCC-------CeEEEEcCCccchhhcccCccCChHHh
Confidence 4555567776655 4455 45553 3 48999999999987553 455555543222234444555666655
No 302
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=38.14 E-value=1.4e+02 Score=26.72 Aligned_cols=59 Identities=24% Similarity=0.220 Sum_probs=37.5
Q ss_pred EEEEEechhH--HHHHHHHHHHHhcCCceeEEEeccccCCCHHH---HHHHHhc--CCeEEEEecCC
Q 017513 241 VTITAFSKIV--GLSLKAAEILAKEGISAEVINLRSIRPLDRST---INASVRK--TNRLVTVEEGF 300 (370)
Q Consensus 241 v~Iia~G~~~--~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~---i~~~~~~--~~~vvvvEe~~ 300 (370)
+++++.+... ....++++.|+++||.+.+|.+-...+= .+. +.+.+.+ ..+++++..+.
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~-~~~l~~~~~~~~~~~~s~~~~~~~~~ 176 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDN-TEKLTAFIDAVNGKDGSHLVSVPPGE 176 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCC-HHHHHHHHHHhcCCCCceEEEeCCCC
Confidence 5566666333 3466889999999999999999876322 222 3344432 24677777653
No 303
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=37.65 E-value=92 Score=23.49 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=38.5
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHh--cCCeEEEEecCCCCCC
Q 017513 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR--KTNRLVTVEEGFPQHG 304 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~--~~~~vvvvEe~~~~GG 304 (370)
++|.+. +....+..|.+.|.++|+....+++..-.+-..+...+... .+=+.|++.+... ||
T Consensus 3 v~iyt~-~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~i-gg 66 (80)
T COG0695 3 VTIYTK-PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHV-GG 66 (80)
T ss_pred EEEEEC-CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEE-eC
Confidence 344433 33677888888999999999999988765522222222332 2336788887543 44
No 304
>TIGR03586 PseI pseudaminic acid synthase.
Probab=37.28 E-value=2e+02 Score=28.14 Aligned_cols=70 Identities=16% Similarity=0.108 Sum_probs=45.6
Q ss_pred cEEEEEec-hhHHHHHHHHHHHHhcCC-ceeEEEeccccCCCHHHH----HHHHh-cCCeEEEEecCCCCCChHHHHHH
Q 017513 240 DVTITAFS-KIVGLSLKAAEILAKEGI-SAEVINLRSIRPLDRSTI----NASVR-KTNRLVTVEEGFPQHGVGAEICA 311 (370)
Q Consensus 240 dv~Iia~G-~~~~~al~Aa~~L~~~Gi-~v~Vi~~~~l~P~d~~~i----~~~~~-~~~~vvvvEe~~~~GGlg~~i~~ 311 (370)
.=+|+++| +...+...|++.+++.|. ++.++++.+-+|-+.+.+ ...++ .++..|-+-+|. .|..-.++.
T Consensus 135 kPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~SDHt--~G~~~~~aA 211 (327)
T TIGR03586 135 KPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGLSDHT--LGILAPVAA 211 (327)
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEeeCCC--CchHHHHHH
Confidence 35578888 777889999999998887 688888888888666532 12233 354334345686 344433333
No 305
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=37.16 E-value=94 Score=26.42 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=34.9
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC--eEEEEe
Q 017513 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN--RLVTVE 297 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~--~vvvvE 297 (370)
++|++=|..-....++++.|++.|+.+-+|-+.. .+.+.|.+...+.. ++..+.
T Consensus 107 iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g~---~~~~~L~~ia~~~~~~~~~~~~ 162 (164)
T cd01482 107 VILITDGKSQDDVELPARVLRNLGVNVFAVGVKD---ADESELKMIASKPSETHVFNVA 162 (164)
T ss_pred EEEEcCCCCCchHHHHHHHHHHCCCEEEEEecCc---CCHHHHHHHhCCCchheEEEcC
Confidence 4455555443455678899999999887776643 56777877766543 444443
No 306
>PHA03050 glutaredoxin; Provisional
Probab=37.02 E-value=2e+02 Score=23.09 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=41.5
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCC---ceeEEEeccccCCCH---HHHHHHHhcC-CeEEEEecCCCCCChHHHHH
Q 017513 239 KDVTITAFSKIVGLSLKAAEILAKEGI---SAEVINLRSIRPLDR---STINASVRKT-NRLVTVEEGFPQHGVGAEIC 310 (370)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi---~v~Vi~~~~l~P~d~---~~i~~~~~~~-~~vvvvEe~~~~GGlg~~i~ 310 (370)
.+++|++.- ..+.+..|.+.|++.|+ ..+++|+....+ +. +.+.+.-.+. =+.|++... ..||+....+
T Consensus 13 ~~V~vys~~-~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~-~~~~~~~l~~~tG~~tVP~IfI~g~-~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKF-TCPFCRNALDILNKFSFKRGAYEIVDIKEFKP-ENELRDYFEQITGGRTVPRIFFGKT-SIGGYSDLLE 88 (108)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHcCCCcCCcEEEECCCCCC-CHHHHHHHHHHcCCCCcCEEEECCE-EEeChHHHHH
Confidence 457776654 46667788888988898 788998874211 22 2333332222 245666654 4688866443
No 307
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=36.78 E-value=1.5e+02 Score=25.63 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHhcCCceeEEEeccccC--C--------CHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHH
Q 017513 249 IVGLSLKAAEILAKEGISAEVINLRSIRP--L--------DRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 249 ~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P--~--------d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
....+..+++.++++|.+++++|++-+.. + +.+.+.+.+...+.+|++=- ...+++.+.+..++-
T Consensus 15 t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP-~Y~~sip~~LK~~iD 89 (171)
T TIGR03567 15 SSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATP-VYKASYSGVLKALLD 89 (171)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECC-cccCCCCHHHHHHHH
Confidence 34455566677888899999999875421 1 11245566777776655443 335888888887773
No 308
>PRK05568 flavodoxin; Provisional
Probab=36.66 E-value=85 Score=25.94 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=26.4
Q ss_pred chhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEE
Q 017513 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTV 296 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvv 296 (370)
|++-..|...++.+++.|++++++++....+ . .+..++.|++.
T Consensus 13 GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~---~----~~~~~d~iilg 55 (142)
T PRK05568 13 GNTEAMANLIAEGAKENGAEVKLLNVSEASV---D----DVKGADVVALG 55 (142)
T ss_pred chHHHHHHHHHHHHHHCCCeEEEEECCCCCH---H----HHHhCCEEEEE
Confidence 4444555555566667799999998876432 1 24456655543
No 309
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=36.51 E-value=2.3e+02 Score=22.94 Aligned_cols=112 Identities=22% Similarity=0.284 Sum_probs=56.8
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCC--HHHHHHHHhc---CCeEEEEecCCCCCChHHHHHHHHH
Q 017513 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLD--RSTINASVRK---TNRLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d--~~~i~~~~~~---~~~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
+++|++-|....-..++++.+-.+.-++..+++.-=..++ .+.+.+.+.+ .+.++++=| ..||---.++..+.
T Consensus 2 ~ili~sHG~~A~gi~~~~~~i~G~~~~i~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~viil~D--l~GGSp~n~~~~~~ 79 (122)
T cd00006 2 GIIIATHGGFASGLLNSAEMILGEQENVEAIDFPPGESPDDLLEKIKAALAELDSGEGVLILTD--LFGGSPNNAAARLS 79 (122)
T ss_pred eEEEEcCHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCcEEEEEe--CCCCCHHHHHHHHH
Confidence 4789999988888999999885443466666654211111 1234455544 244554443 23554444444443
Q ss_pred hhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 017513 315 EESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 358 (370)
Q Consensus 315 ~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~ 358 (370)
.+ ...+..++.-+.|.--........+.+.+++++.+.+
T Consensus 80 ~~-----~~~~~visG~nlpmlle~~~~~~~~~~~~e~~~~~~~ 118 (122)
T cd00006 80 ME-----HPPVEVIAGVNLPMLLEAARARELGLSLDELVENALE 118 (122)
T ss_pred hc-----CCCEEEEEccCHHHHHHHHHccccCCCHHHHHHHHHH
Confidence 32 1245556555443211111111123566666666543
No 310
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=36.31 E-value=1.8e+02 Score=28.59 Aligned_cols=99 Identities=20% Similarity=0.247 Sum_probs=53.7
Q ss_pred HHHHHHHhcc--CCeeEEEcccchHH---HHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchH--HH-HH
Q 017513 97 TGIGVGAAYY--GLKPVVEFMTFNFS---MQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH--CY-AA 168 (370)
Q Consensus 97 v~~A~GlA~~--G~rp~~~t~~~~f~---~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~--~~-~a 168 (370)
+|..+++|.. +-..++.+++.+.. ...||.+ ++|+ ..++|+||++-. --+|.|++|.- .+ +=
T Consensus 173 LGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~--NMA~-------LW~LP~IFvCEN-N~yGMGTs~~Rasa~tey 242 (394)
T KOG0225|consen 173 LGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAF--NMAA-------LWKLPVIFVCEN-NHYGMGTSAERASASTEY 242 (394)
T ss_pred ccccHHHHHHhccCCceEEEEeccccccchhHHHHh--hHHH-------HhCCCEEEEEcc-CCCccCcchhhhhcChHH
Confidence 3444444443 44455544444443 1344544 2333 368999999842 12356666622 22 22
Q ss_pred HHcc--CCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEec
Q 017513 169 WYAS--VPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLEN 206 (370)
Q Consensus 169 ~~~~--iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~ 206 (370)
+.|. |||+.| .-.|.--++.+.++|.+ ..+|+++-..
T Consensus 243 ykRG~yiPGl~V-dGmdvlaVr~a~KfA~~~~~~g~GPilmE~~ 285 (394)
T KOG0225|consen 243 YKRGDYIPGLKV-DGMDVLAVREATKFAKKYALEGKGPILMEMD 285 (394)
T ss_pred HhccCCCCceEE-CCcchhhHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 4454 898754 44555555666666554 4799998544
No 311
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=36.08 E-value=3.3e+02 Score=26.85 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=54.3
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEE-EeccccCCCHHH-HHHHHhcCCeEEEEecCCCCCChHHHHHHHHH
Q 017513 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI-NLRSIRPLDRST-INASVRKTNRLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi-~~~~l~P~d~~~-i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
.|.|++=+|.=. ..+-+|...+++ ++++-+| |+++ |... +....+..+++=+ --++. |+ -+.+...+.
T Consensus 46 aGceiVRvavp~--~~~A~al~~I~~-~~~iPlVADIHF----d~~lAl~a~~~g~dkiRI-NPGNi-g~-~e~v~~vv~ 115 (346)
T TIGR00612 46 AGCDIVRVTVPD--RESAAAFEAIKE-GTNVPLVADIHF----DYRLAALAMAKGVAKVRI-NPGNI-GF-RERVRDVVE 115 (346)
T ss_pred cCCCEEEEcCCC--HHHHHhHHHHHh-CCCCCEEEeeCC----CcHHHHHHHHhccCeEEE-CCCCC-CC-HHHHHHHHH
Confidence 466766666432 233344445543 5555433 4443 3332 2222233444432 22332 33 233333332
Q ss_pred hhccCCCCCCEEEEecCCCCCCCHHHHHHHhC-CCHHHHHHHHHHHHh
Q 017513 315 EESFGYLDAPVERIAGADVPMPYAANLERMAV-PQVEDIVRAAKRACY 361 (370)
Q Consensus 315 ~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~g-l~~~~I~~~i~~~l~ 361 (370)
.-. ..+ ...|+|++.-.. ...+.+.|| ++++.+++.+.+.++
T Consensus 116 ~ak--~~~-ipIRIGVN~GSL--~~~~~~kyg~~t~eamveSAl~~v~ 158 (346)
T TIGR00612 116 KAR--DHG-KAMRIGVNHGSL--ERRLLEKYGDATAEAMVQSALEEAA 158 (346)
T ss_pred HHH--HCC-CCEEEecCCCCC--cHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 111 012 345899864333 356666676 899999999988664
No 312
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=35.95 E-value=2.5e+02 Score=23.17 Aligned_cols=58 Identities=9% Similarity=0.019 Sum_probs=38.2
Q ss_pred EEEEEechhHHHHHHHHHHHHhc-CCceeEEEeccccCCCHHHHHHHHhc-CCeEEEEec
Q 017513 241 VTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEE 298 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~l~P~d~~~i~~~~~~-~~~vvvvEe 298 (370)
++.+++=.....+.+.+-..+.+ -=++.+|.++|.--+|.+.|.+.+.+ .+-|+++--
T Consensus 2 Il~F~C~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC 61 (124)
T PF02662_consen 2 ILAFCCNWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEKGADGVLVAGC 61 (124)
T ss_pred EEEEEeCCCcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHcCCCEEEEeCC
Confidence 44555444444444444333322 34699999999999999999888864 577777543
No 313
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=35.80 E-value=1.7e+02 Score=28.67 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=33.7
Q ss_pred CcccCEEEEeC-CC--CCCCC-CCcchHHH--HHHHccCCCcEEEeeCCHHHHHHHHHHHH----hCCCCEEEEe
Q 017513 141 QISVPIVFRGP-NG--AAAGV-GAQHSHCY--AAWYASVPGLKVLSPYSSEDARGLLKAAI----RDPDPVVFLE 205 (370)
Q Consensus 141 ~~~~pvv~~~~-~G--~~~~~-G~tHs~~~--~a~~~~iP~~~V~~P~d~~e~~~~l~~a~----~~~~Pv~i~~ 205 (370)
..++|+++++. .+ .+... ..+...++ .+---.+|++.| .=.|..++...+..|+ +.++|++|-.
T Consensus 183 ~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~V-dg~d~~av~~a~~~A~~~ar~~~gP~lIev 256 (341)
T CHL00149 183 LWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEV-DGMDVLAVREVAKEAVERARQGDGPTLIEA 256 (341)
T ss_pred hcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 47899999873 44 22211 01111111 122235787765 4456655555555444 4578999853
No 314
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=35.23 E-value=79 Score=31.07 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=35.7
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHH----HHHhcCCeEEE
Q 017513 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTIN----ASVRKTNRLVT 295 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~----~~~~~~~~vvv 295 (370)
++..++||+.|.|...+ ++.|.++|++--.|--|+..+.+.+.+. +...+++-|++
T Consensus 173 ~~k~vLvIGaGem~~l~---a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 173 KKASLLFIGYSEINRKV---AYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFF 232 (338)
T ss_pred cCCEEEEEcccHHHHHH---HHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEE
Confidence 46789999999998874 5577788976444445665554444332 33456665554
No 315
>PRK09739 hypothetical protein; Provisional
Probab=35.14 E-value=1.4e+02 Score=26.39 Aligned_cols=64 Identities=13% Similarity=0.055 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCCceeEEEecccc--C------------------CCHHHHHHHHhcCCeEEEEecCCCCCChHHHH
Q 017513 250 VGLSLKAAEILAKEGISAEVINLRSIR--P------------------LDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309 (370)
Q Consensus 250 ~~~al~Aa~~L~~~Gi~v~Vi~~~~l~--P------------------~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i 309 (370)
...+...++.++++|.+++++|+.... | -+.+.+.+.+...+.||+.= -...+++.+.+
T Consensus 20 ~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~-P~y~~~~Pa~L 98 (199)
T PRK09739 20 AKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVF-PLWWYSFPAML 98 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEEC-chhhhcchHHH
Confidence 344555677788889999999987542 1 11234556677777765543 33458888888
Q ss_pred HHHHH
Q 017513 310 CASVI 314 (370)
Q Consensus 310 ~~~l~ 314 (370)
..++-
T Consensus 99 K~~iD 103 (199)
T PRK09739 99 KGYID 103 (199)
T ss_pred HHHHH
Confidence 87764
No 316
>PRK05569 flavodoxin; Provisional
Probab=34.89 E-value=95 Score=25.63 Aligned_cols=44 Identities=9% Similarity=0.039 Sum_probs=26.3
Q ss_pred echhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEE
Q 017513 246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTV 296 (370)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvv 296 (370)
+|++-..|...++.+++.|++++++++... +.+ .+.+++.|++.
T Consensus 12 tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~---~~~----~~~~~d~iilg 55 (141)
T PRK05569 12 GGNVEVLANTIADGAKEAGAEVTIKHVADA---KVE----DVLEADAVAFG 55 (141)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEECCcC---CHH----HHhhCCEEEEE
Confidence 345555566666667677888888776543 222 24456665553
No 317
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=34.62 E-value=3.6e+02 Score=28.00 Aligned_cols=112 Identities=25% Similarity=0.288 Sum_probs=58.7
Q ss_pred HHhCCCcEeechhhHHHHHHH----HHHHhcc-CCeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--
Q 017513 79 EKYGPERVLDTPITEAGFTGI----GVGAAYY-GLKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-- 150 (370)
Q Consensus 79 ~~~~p~r~~~~GIaE~~~v~~----A~GlA~~-G~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-- 150 (370)
....|-|..|.|-- .-+|+ |.|++.. -.+.+++.+. +.|-.-++| ...++ ..++||+++.
T Consensus 416 ~~~~Pr~rLDaGtf--gTMGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME--~ET~v--------R~~Lpvv~vV~N 483 (571)
T KOG1185|consen 416 PPRGPRRRLDAGTF--GTMGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAME--LETFV--------RYKLPVVIVVGN 483 (571)
T ss_pred cCCCcccccCCccc--cccccchhHHHHHHhhCCCCeEEEEecCcccCcchhh--HHHHH--------HhcCCeEEEEec
Confidence 33349999998742 23333 3333333 2344444433 122222333 13445 3689988876
Q ss_pred CCCCCCCC--CCcc-h-H------H---------HHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCC-CCEEE
Q 017513 151 PNGAAAGV--GAQH-S-H------C---------YAAWYASVPGLKVLSPYSSEDARGLLKAAIRDP-DPVVF 203 (370)
Q Consensus 151 ~~G~~~~~--G~tH-s-~------~---------~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~-~Pv~i 203 (370)
..|.+|.| |.+. + | + ++-++..+ |.+=+.-.++.|+...++++++.. +|++|
T Consensus 484 N~Giyg~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~-G~kG~~v~t~~el~~~l~~a~q~~~~psvI 555 (571)
T KOG1185|consen 484 NNGIYGLDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAF-GGKGYFVSTVEELLAALQQACQDTDKPSVI 555 (571)
T ss_pred CCcccccCcccHHHHhhcCcccCCCcccccccccHHHHHHHc-CCCceeeCCHHHHHHHHHHHHhcCCCCeEE
Confidence 35665432 2221 0 0 0 01122222 223344459999999999999874 89987
No 318
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=34.40 E-value=2.2e+02 Score=29.83 Aligned_cols=110 Identities=17% Similarity=0.109 Sum_probs=61.5
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCC-CCC
Q 017513 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNG-AAA 156 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G-~~~ 156 (370)
|.+|++.+- +=-..+..|.|++++. -|+++.+.. ..|.+.+ |-...+. ..++|++++. ..| ..-
T Consensus 408 ~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i~GDG~f~m~~--~eL~Ta~--------~~~l~i~~vV~NN~~y~~ 477 (566)
T PRK07282 408 ERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTN--QELAILN--------IYKVPIKVVMLNNHSLGM 477 (566)
T ss_pred CCcEecCCccccccchhhHhheeheecCCCcEEEEEcchhhhccH--HHHHHHH--------HhCCCeEEEEEeCCCchH
Confidence 788897642 2233566777777774 356665544 2233322 2223344 3678877765 333 210
Q ss_pred ----------CCCC-c---chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 157 ----------GVGA-Q---HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 157 ----------~~G~-t---Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
+.+. . +..++..+-+.+ |..-..-.+++|+..++. ++..++|++|-
T Consensus 478 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~-~~~~~~p~lIe 537 (566)
T PRK07282 478 VRQWQESFYEGRTSESVFDTLPDFQLMAQAY-GIKHYKFDNPETLAQDLE-VITEDVPMLIE 537 (566)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHH-HhcCCCCEEEE
Confidence 1111 0 111223344444 677788899999999997 45668999984
No 319
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=34.39 E-value=68 Score=27.87 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=28.7
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeE
Q 017513 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~V 269 (370)
.+.+++++++|-.+...+..++.|+++|.+|.+
T Consensus 56 ~~~~vLVLGTgEfMy~Pl~lA~~Le~~g~~V~~ 88 (155)
T PF12500_consen 56 PGERVLVLGTGEFMYLPLLLAEELEQAGADVRY 88 (155)
T ss_pred CCCcEEEEccchHHHHHHHHHHHHHhcCCceEE
Confidence 578999999999999999999999999865443
No 320
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=34.17 E-value=1.6e+02 Score=29.53 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=42.1
Q ss_pred CCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCE-EEEecCCCC--------CCCHHHHHHHhCCCHHHHHHHH
Q 017513 290 TNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPV-ERIAGADVP--------MPYAANLERMAVPQVEDIVRAA 356 (370)
Q Consensus 290 ~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~-~~ig~~d~~--------~~~~~~l~~~~gl~~~~I~~~i 356 (370)
.|+||+|||+...|--.+.|...+.+.|- ..+ .+++.+..- .|..++|-. +.++.++|.+.|
T Consensus 356 GKrvvlVDDSIVRGtTs~~IVkmlreaGA----keVh~riAsPpi~~pc~yGIdipt~keLIA-~~~t~deiae~i 426 (474)
T KOG0572|consen 356 GKRVVLVDDSIVRGTTSSPIVKMLREAGA----KEVHIRIASPPIKYPCYYGIDIPTSKELIA-NKLTVDEIAEHI 426 (474)
T ss_pred CceEEEEecceeccCchHHHHHHHHHcCC----cEEEEEecCCcccccceeecCCCCHHHHHh-cCCCHHHHHHHh
Confidence 46899999999999999999999988752 122 355555421 123345443 567888777765
No 321
>PRK08114 cystathionine beta-lyase; Provisional
Probab=34.12 E-value=97 Score=31.09 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=22.2
Q ss_pred HHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEec
Q 017513 259 ILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (370)
Q Consensus 259 ~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe 298 (370)
.|++.|+++..+| +.|.+.+.+.++...++|.+|-
T Consensus 121 ~l~~~Gi~v~~vd-----~~d~~~l~~~l~~~TrlV~~Et 155 (395)
T PRK08114 121 ILSKLGVTTTWFD-----PLIGADIAKLIQPNTKVVFLES 155 (395)
T ss_pred HHHhcCcEEEEEC-----CCCHHHHHHhcCCCceEEEEEC
Confidence 4556677777766 3456667766654446777775
No 322
>PTZ00062 glutaredoxin; Provisional
Probab=33.93 E-value=1.5e+02 Score=26.93 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=42.6
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc-----CCeEEEEecCCCCCChHHH
Q 017513 238 GKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-----TNRLVTVEEGFPQHGVGAE 308 (370)
Q Consensus 238 g~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~-----~~~vvvvEe~~~~GGlg~~ 308 (370)
...++|++-| +....+.++.+.|++.|++...+|+.. | +.+++.+.+ +=+.|.+.... .||+...
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~----d-~~~~~~l~~~sg~~TvPqVfI~G~~-IGG~d~l 185 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFE----D-PDLREELKVYSNWPTYPQLYVNGEL-IGGHDII 185 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCC----C-HHHHHHHHHHhCCCCCCeEEECCEE-EcChHHH
Confidence 3456777666 357788889999999999999999873 3 334444432 21346666543 5887643
No 323
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=33.56 E-value=2.4e+02 Score=25.13 Aligned_cols=67 Identities=9% Similarity=0.070 Sum_probs=42.5
Q ss_pred echhHHHHHHHHHHHHhc-CCceeEEEeccccCCCHHHH---------------HHHHhcCCeEEEEecCCCCCChHHHH
Q 017513 246 FSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTI---------------NASVRKTNRLVTVEEGFPQHGVGAEI 309 (370)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~l~P~d~~~i---------------~~~~~~~~~vvvvEe~~~~GGlg~~i 309 (370)
+|++...|...++.+++. |.++++++++...| .+.+ .+.+..++.|++.= ....|.+...+
T Consensus 11 ~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GS-Pty~g~~~~~l 87 (197)
T TIGR01755 11 YGHIETMARAVAEGAREVDGAEVVVKRVPETVP--EEVAEKSHGKTDQTAPVATPQELADYDAIIFGT-PTRFGNMASQM 87 (197)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeccccCc--HHHHHhccCCcccCCccCCHHHHHHCCEEEEEe-cccccCccHHH
Confidence 456777777777788775 99999999865422 1211 13345666655433 33467888888
Q ss_pred HHHHHh
Q 017513 310 CASVIE 315 (370)
Q Consensus 310 ~~~l~~ 315 (370)
..++..
T Consensus 88 k~fld~ 93 (197)
T TIGR01755 88 RNFLDQ 93 (197)
T ss_pred HHHHHh
Confidence 777765
No 324
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=33.38 E-value=1.2e+02 Score=30.22 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=36.9
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHH-hcCCeEEEEec
Q 017513 239 KDVTITAFSK-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASV-RKTNRLVTVEE 298 (370)
Q Consensus 239 ~dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~-~~~~~vvvvEe 298 (370)
.+++|+..|. ....|++.++.|+++|+++.+ +... +.+ .+.+..+- .+...++++.+
T Consensus 319 ~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i-~~~~-~~~-~~~~~~a~~~gi~~~viig~ 377 (412)
T PRK00037 319 VDVYVVPLGEDAELAALKLAEKLRAAGIRVEL-DYGG-RKL-KKQFKYADKSGARFVLILGE 377 (412)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHCCCeEEE-eCCC-CCH-HHHHHHHHHcCCCEEEEECh
Confidence 5888988774 345688899999999999876 4332 233 33343322 23456677665
No 325
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=33.36 E-value=2.3e+02 Score=22.07 Aligned_cols=56 Identities=23% Similarity=0.204 Sum_probs=36.1
Q ss_pred EEEEEechhHHHHHHHHHHH----HhcCCceeEEEecc---ccCCCHHHHHHHHhcCCeEEEEecCC
Q 017513 241 VTITAFSKIVGLSLKAAEIL----AKEGISAEVINLRS---IRPLDRSTINASVRKTNRLVTVEEGF 300 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L----~~~Gi~v~Vi~~~~---l~P~d~~~i~~~~~~~~~vvvvEe~~ 300 (370)
+.|+++|+..-.+.-|++.| ++.|+++.|---.. ..+++.+.+. ..+.|+++=+..
T Consensus 2 ~~i~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~----~Ad~vi~~~~~~ 64 (96)
T cd05569 2 VAVTACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIA----EADAVILAADVP 64 (96)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHh----hCCEEEEecCCC
Confidence 46788887776666565555 46699888664444 5677766553 456666665543
No 326
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=33.35 E-value=1.4e+02 Score=26.30 Aligned_cols=62 Identities=11% Similarity=0.157 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhh
Q 017513 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEE 316 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~ 316 (370)
|.+-..|...+..|+|.|+.|++.|+..+.-. .+..+++||+ =.+...|-+.+.+-+++..+
T Consensus 12 GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~-------~l~~ydavVI-gAsI~~~h~~~~~~~Fv~k~ 73 (175)
T COG4635 12 GQTRKIAEYIASHLRESGIQVDIQDLHAVEEP-------ALEDYDAVVI-GASIRYGHFHEAVQSFVKKH 73 (175)
T ss_pred CcHHHHHHHHHHHhhhcCCeeeeeehhhhhcc-------ChhhCceEEE-ecchhhhhhHHHHHHHHHHH
Confidence 56667777778889999999999998875432 2456777665 44455577777777766543
No 327
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=33.32 E-value=3.2e+02 Score=26.40 Aligned_cols=75 Identities=19% Similarity=0.195 Sum_probs=44.5
Q ss_pred EEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEE-----EecCCCCCChHHHHHHHHHhhc
Q 017513 243 ITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVT-----VEEGFPQHGVGAEICASVIEES 317 (370)
Q Consensus 243 Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvv-----vEe~~~~GGlg~~i~~~l~~~~ 317 (370)
+++-+....+....++.|.+.||++.+|--. .+-..+.+.++|++ ++++....-.|+.....++.+
T Consensus 150 ~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Ds--------av~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~- 220 (310)
T PRK08535 150 IATETRPRNQGHITAKELAEYGIPVTLIVDS--------AVRYFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHE- 220 (310)
T ss_pred EEecCCchhhHHHHHHHHHHCCCCEEEEehh--------HHHHHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHH-
Confidence 3444444555566778899999999998533 34445666777655 233333333566666666654
Q ss_pred cCCCCCCEEEEe
Q 017513 318 FGYLDAPVERIA 329 (370)
Q Consensus 318 ~~~l~~~~~~ig 329 (370)
.+.|+.-++
T Consensus 221 ---~~vPv~V~a 229 (310)
T PRK08535 221 ---ARVPFMVAA 229 (310)
T ss_pred ---hCCCEEEec
Confidence 246776554
No 328
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=33.31 E-value=1.7e+02 Score=23.69 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=25.9
Q ss_pred chhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEe
Q 017513 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVE 297 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvE 297 (370)
|++-..|...++.|++.|+++.++++....| +. +.+++.|++.=
T Consensus 10 GnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~---~~----l~~~d~iilgs 53 (140)
T TIGR01753 10 GNTEEMANIIAEGLKEAGAEVDLLEVADADA---ED----LLSYDAVLLGC 53 (140)
T ss_pred cHHHHHHHHHHHHHHhcCCeEEEEEcccCCH---HH----HhcCCEEEEEc
Confidence 3444444444555667799999998876533 22 33466665544
No 329
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=33.20 E-value=2.9e+02 Score=24.33 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=20.0
Q ss_pred CeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHH
Q 017513 56 KVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGF 96 (370)
Q Consensus 56 ~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~ 96 (370)
+||+++.-.+ +|+ ..+...|++.+ |+-|+..+++...-
T Consensus 2 ~iI~LNG~sS-SGK-Ssia~~Lq~~~-~~p~~~l~~D~f~~ 39 (174)
T PF07931_consen 2 QIIILNGPSS-SGK-SSIARALQERL-PEPWLHLSVDTFVD 39 (174)
T ss_dssp -EEEEEE-TT-SSH-HHHHHHHHHHS-SS-EEEEEHHHHHH
T ss_pred eEEEEeCCCC-CCH-HHHHHHHHHhC-cCCeEEEecChHHh
Confidence 3555654432 233 23455667777 77777777775544
No 330
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=33.14 E-value=1e+02 Score=27.89 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=38.4
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcC--CeEEEEec
Q 017513 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT--NRLVTVEE 298 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~--~~vvvvEe 298 (370)
++|++-|..-....++++.|++.|+.+-.|-+-. .|.+.|.+.+... ++++.+++
T Consensus 112 villTDG~s~~~~~~~a~~lk~~gv~i~~VgvG~---~~~~~L~~ias~~~~~~~f~~~~ 168 (224)
T cd01475 112 GIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGR---ADEEELREIASEPLADHVFYVED 168 (224)
T ss_pred EEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCCc---CCHHHHHHHhCCCcHhcEEEeCC
Confidence 4566666544556678888999999888887654 6788888877543 35666665
No 331
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=33.06 E-value=2.8e+02 Score=24.20 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=38.1
Q ss_pred chhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhh
Q 017513 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEE 316 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~ 316 (370)
|++-..|...++.|+. |+.++++++....+. .+..++.||+ =-....|.+...+..++..+
T Consensus 12 G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~-------~l~~yD~vIl-Gspi~~G~~~~~~~~fl~~~ 72 (177)
T PRK11104 12 GQTRKIASYIASELKE-GIQCDVVNLHRIEEP-------DLSDYDRVVI-GASIRYGHFHSALYKFVKKH 72 (177)
T ss_pred ChHHHHHHHHHHHhCC-CCeEEEEEhhhcCcc-------CHHHCCEEEE-ECccccCCcCHHHHHHHHHH
Confidence 5555666666677766 888988887654321 2445776554 33444577777777776543
No 332
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=32.83 E-value=93 Score=31.15 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=52.4
Q ss_pred EEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEe-cCCCCCCh--HHHHHHHHHhhc
Q 017513 243 ITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVE-EGFPQHGV--GAEICASVIEES 317 (370)
Q Consensus 243 Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvE-e~~~~GGl--g~~i~~~l~~~~ 317 (370)
||++-..=+..++..+.|+.+|++|+.+.+..=--+|.+.|++.+.....+|.+= -|+.+|-+ =.+|++.+.+++
T Consensus 94 IIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~ 171 (386)
T COG1104 94 IITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERG 171 (386)
T ss_pred EEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcC
Confidence 5566666677888999998889999999888766788999999997554444443 34554533 235566665553
No 333
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=32.82 E-value=2e+02 Score=34.65 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=27.0
Q ss_pred CcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017513 175 GLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 175 ~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
|+.-....+++|+..++.++...++|++|-
T Consensus 856 G~~~~rV~~~~eL~~aL~~a~~~~~p~lIE 885 (1655)
T PLN02980 856 GVRHLHVGTKSELEDALFTSQVEQMDCVVE 885 (1655)
T ss_pred CCceeecCCHHHHHHHHHHhhccCCCEEEE
Confidence 677888899999999999999989999984
No 334
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=32.73 E-value=2.9e+02 Score=23.82 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=37.1
Q ss_pred cEEEEEec-hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC----eEEEEecCCCCCChHHHHHH
Q 017513 240 DVTITAFS-KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN----RLVTVEEGFPQHGVGAEICA 311 (370)
Q Consensus 240 dv~Iia~G-~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~----~vvvvEe~~~~GGlg~~i~~ 311 (370)
++.||+-+ +-...+.++.+.|++-|+..++ .+.+..--+.+ +.+.+++.. ++++.=-+. .++|...++.
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~-~V~saHR~p~~-l~~~~~~~~~~~~~viIa~AG~-~a~Lpgvva~ 75 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFGIPYEV-RVASAHRTPER-LLEFVKEYEARGADVIIAVAGM-SAALPGVVAS 75 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-EEEE-EE--TTTSHHH-HHHHHHHTTTTTESEEEEEEES-S--HHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcCCCEEE-EEEeccCCHHH-HHHHHHHhccCCCEEEEEECCC-cccchhhhee
Confidence 34555433 6778899999999999987764 45555444444 444554331 344443333 3566555543
No 335
>PRK12753 transketolase; Reviewed
Probab=32.61 E-value=3.4e+02 Score=29.30 Aligned_cols=63 Identities=10% Similarity=0.090 Sum_probs=35.7
Q ss_pred cccC-EEEEe-CCCC--CCCCCCcchHHHHHHHccCCCcEEEeeC---CHHHHHHHHHHHHhC-CCCEEEEe
Q 017513 142 ISVP-IVFRG-PNGA--AAGVGAQHSHCYAAWYASVPGLKVLSPY---SSEDARGLLKAAIRD-PDPVVFLE 205 (370)
Q Consensus 142 ~~~p-vv~~~-~~G~--~~~~G~tHs~~~~a~~~~iP~~~V~~P~---d~~e~~~~l~~a~~~-~~Pv~i~~ 205 (370)
+++| ++++. ..+. ++..+.....+....++.. ||.++.+- |..++..++..+... ++|++|..
T Consensus 173 ~kL~nLi~ivd~N~~~i~~~~~~~~~~~~~~~f~a~-Gw~~~~~vDGhD~~~i~~a~~~a~~~~~~P~~I~~ 243 (663)
T PRK12753 173 LGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAY-HWHVIHEIDGHDPQAIKEAILEAQSVKDKPSLIIC 243 (663)
T ss_pred HCCCCEEEEEECCCCcCCCChhhhcChhHHHHHHHc-CCeEEceeCCCCHHHHHHHHHHHHHCCCCeEEEEE
Confidence 6786 55444 3332 2222222223334677776 88888544 455666666666654 68999864
No 336
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=32.24 E-value=4.2e+02 Score=24.64 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=43.2
Q ss_pred cccCCCHHHHHHHHhcCCeEEEEecCC----CCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHH-hC--
Q 017513 274 SIRPLDRSTINASVRKTNRLVTVEEGF----PQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERM-AV-- 346 (370)
Q Consensus 274 ~l~P~d~~~i~~~~~~~~~vvvvEe~~----~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~-~g-- 346 (370)
.+-+++.+.+.+.++..+- ++.-... ..-|++..+.+.++- +.|+... +.. ...+.+... .|
T Consensus 240 ~~g~~~~~~l~~~~~~adi-~l~~s~~~~~~~~e~~~~~~~Ea~a~------G~Pvi~~---~~~-~~~~~i~~~~~g~~ 308 (355)
T cd03799 240 LLGAKSQEEVRELLRAADL-FVLPSVTAADGDREGLPVVLMEAMAM------GLPVIST---DVS-GIPELVEDGETGLL 308 (355)
T ss_pred ECCcCChHHHHHHHHhCCE-EEecceecCCCCccCccHHHHHHHHc------CCCEEec---CCC-CcchhhhCCCceEE
Confidence 4455667778888887764 4332211 014667778888763 4566432 111 111222211 11
Q ss_pred ---CCHHHHHHHHHHHHhcc
Q 017513 347 ---PQVEDIVRAAKRACYRS 363 (370)
Q Consensus 347 ---l~~~~I~~~i~~~l~~~ 363 (370)
-|++++++++.++++..
T Consensus 309 ~~~~~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 309 VPPGDPEALADAIERLLDDP 328 (355)
T ss_pred eCCCCHHHHHHHHHHHHhCH
Confidence 27888999998887543
No 337
>cd06064 H2MP_F420-Reduc Endopeptidases belonging to F420-reducing hydrogenases group. These hydrogenases from methanogens are encoded by the fru, frc, or frh genes. Sequence comparison indicates that fruD and frcD gene products from Methanococcus voltae are similar to HycI protease of Escherichia coli and are putatively involved in the C-terminal processing of large subunits (FruA and FrcA respectively). FrhD (F420 reducing hydrogenase delta subunit) enzyme belongs to the gene cluster of 8-hydroxy-5-deazaflavin (F420) reducing hydrogenase (FRH) from the thermophilic methanogen Methanobacterium thermoautotrophicum delta H. FrhD subunit is putatively involved in the processing of the coenzyme F420 hydrogenase-processing. It is similar to those frhD genes found in Methanomicrobia and Methanobacteria. It is different from the FrhD conserved domain found in methyl viologen-reducing hydrogenase and F420-non-reducing hydrogenase iron-sulfur subunit D.
Probab=32.20 E-value=65 Score=27.38 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=16.1
Q ss_pred EEEechhHH----HHHHHHHHHHhcCC---ceeEEEecc
Q 017513 243 ITAFSKIVG----LSLKAAEILAKEGI---SAEVINLRS 274 (370)
Q Consensus 243 Iia~G~~~~----~al~Aa~~L~~~Gi---~v~Vi~~~~ 274 (370)
|+++|+... ....+++.|++... .++++|..+
T Consensus 2 ViGiGN~l~gDDgvG~~va~~l~~~~~~~~~v~vid~g~ 40 (150)
T cd06064 2 VVGCGNILFGDDGFGPAVIEELEKLELLPDNVQVIDAGT 40 (150)
T ss_pred EEEECCcccccCcHHHHHHHHHHhccCCCCCEEEEECCC
Confidence 455555441 24455556654432 356666555
No 338
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=31.98 E-value=1.3e+02 Score=28.77 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=36.7
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEecc----------ccCCCHHHHHHHHhcCCeEE
Q 017513 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS----------IRPLDRSTINASVRKTNRLV 294 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~----------l~P~d~~~i~~~~~~~~~vv 294 (370)
.|+.++|+++|.+-.. +++.|+..|.++.|.+-.. ..+++.+.+.+.+++.+-|+
T Consensus 150 ~gk~v~IiG~G~iG~a---vA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVi 214 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMT---IARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVI 214 (287)
T ss_pred CCCEEEEEcChHHHHH---HHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEE
Confidence 3678999999985543 5666777788888887532 23445555666677766443
No 339
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=31.92 E-value=4e+02 Score=24.35 Aligned_cols=78 Identities=14% Similarity=0.102 Sum_probs=44.0
Q ss_pred cccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHh------CC
Q 017513 274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMA------VP 347 (370)
Q Consensus 274 ~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~------gl 347 (370)
.+-+++.+.+.+.+.+.+-++ .-.. ..|++..+.++++- +.|+.. . +.. ...+.+.+.. --
T Consensus 263 ~~g~~~~~~~~~~~~~ad~~i-~~~~--~~~~~~~~~Ea~~~------G~pvI~--~-~~~-~~~~~~~~~~~g~~~~~~ 329 (377)
T cd03798 263 FLGAVPHEEVPAYYAAADVFV-LPSL--REGFGLVLLEAMAC------GLPVVA--T-DVG-GIPEIITDGENGLLVPPG 329 (377)
T ss_pred EeCCCCHHHHHHHHHhcCeee-cchh--hccCChHHHHHHhc------CCCEEE--e-cCC-ChHHHhcCCcceeEECCC
Confidence 344667777888888776433 3322 26677777777753 456642 1 111 1112222111 13
Q ss_pred CHHHHHHHHHHHHhccc
Q 017513 348 QVEDIVRAAKRACYRSV 364 (370)
Q Consensus 348 ~~~~I~~~i~~~l~~~~ 364 (370)
+++++++++.+++...+
T Consensus 330 ~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 330 DPEALAEAILRLLADPW 346 (377)
T ss_pred CHHHHHHHHHHHhcCcH
Confidence 78899999999886543
No 340
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=31.91 E-value=1.2e+02 Score=25.69 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=33.8
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcC--CeEEEEe
Q 017513 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT--NRLVTVE 297 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~--~~vvvvE 297 (370)
+++++-|..-....+++..|++.|+.+-.|-+.. -|.+.|+...... +.+..++
T Consensus 107 iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g~---~~~~~L~~ia~~~~~~~~~~~~ 162 (164)
T cd01472 107 LVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKN---ADEEELKQIASDPKELYVFNVA 162 (164)
T ss_pred EEEEcCCCCCchHHHHHHHHHHCCCEEEEEECCc---CCHHHHHHHHCCCchheEEecc
Confidence 4455555443334456667888898877776544 3888888777655 3555544
No 341
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=31.54 E-value=1.9e+02 Score=27.44 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=34.0
Q ss_pred CcccCEEEEeC-CCCCCCCCCcch---HHHH-HHHc--cCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEe
Q 017513 141 QISVPIVFRGP-NGAAAGVGAQHS---HCYA-AWYA--SVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (370)
Q Consensus 141 ~~~~pvv~~~~-~G~~~~~G~tHs---~~~~-a~~~--~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~ 205 (370)
..++|++++.. .+..- ..+++. ..+. .+.. .+|++.| .-.|+.++...++.|++ .++|++|-.
T Consensus 152 ~~~lPvi~vv~NN~~~i-~~~~~~~~~~~~~~~~a~a~G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~~P~lIev 225 (293)
T cd02000 152 LWKLPVIFVCENNGYAI-STPTSRQTAGTSIADRAAAYGIPGIRV-DGNDVLAVYEAAKEAVERARAGGGPTLIEA 225 (293)
T ss_pred hhCCCEEEEEeeCCeec-cCCHHHHhCCccHHHHHHhCCCCEEEE-CCCCHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 46899999874 34211 111111 1122 2222 3554432 33467788887877774 478999854
No 342
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=31.39 E-value=2.9e+02 Score=28.22 Aligned_cols=109 Identities=19% Similarity=0.153 Sum_probs=68.5
Q ss_pred chhhHHHHHHHHHHHhccCCeeEE--EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcch-HH
Q 017513 89 TPITEAGFTGIGVGAAYYGLKPVV--EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHS-HC 165 (370)
Q Consensus 89 ~GIaE~~~v~~A~GlA~~G~rp~~--~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs-~~ 165 (370)
.+--||.+.-+|-|.|..-.+|=+ .|..|... .....+...++ -.+|+|+...--+....|+-.- ..
T Consensus 134 LPrHEQgaghaAegYaR~sgKPGvvlvTSGPGAT-Nvvtp~ADAla---------Dg~PlVvftGQVptsaIGtDAFQEa 203 (675)
T KOG4166|consen 134 LPRHEQGAGHAAEGYARSSGKPGVVLVTSGPGAT-NVVTPLADALA---------DGVPLVVFTGQVPTSAIGTDAFQEA 203 (675)
T ss_pred ccccccccchhhhhhhhhcCCCcEEEEecCCCcc-cccchhhHHhh---------cCCcEEEEecccchhhcccchhccC
Confidence 677899999999999999555532 34344332 23334433333 5688877631011112232221 22
Q ss_pred H-HHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEeccc
Q 017513 166 Y-AAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENEL 208 (370)
Q Consensus 166 ~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~ 208 (370)
| ..+-|++-.|.|+. .|.+|+-.-++.|++ .++||.+-.||.
T Consensus 204 diVgisRScTKwNvmV-kdVedlPrrI~EAFeiATSGRPGPVLVDlPKD 251 (675)
T KOG4166|consen 204 DIVGISRSCTKWNVMV-KDVEDLPRRIEEAFEIATSGRPGPVLVDLPKD 251 (675)
T ss_pred Ceeeeeeccceeheee-ecHHHhhHHHHHHhhhhccCCCCCeEeeCcHH
Confidence 3 36778888887654 688999999999987 379999987764
No 343
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=31.21 E-value=1.3e+02 Score=29.84 Aligned_cols=57 Identities=28% Similarity=0.338 Sum_probs=38.2
Q ss_pred CcEEEEEech-hHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHh-cCCeEEEEec
Q 017513 239 KDVTITAFSK-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEE 298 (370)
Q Consensus 239 ~dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~-~~~~vvvvEe 298 (370)
.++.|++.+. ....+++.+..|+++|+++++ +... +++ .+.+..+-+ +...++++.+
T Consensus 323 ~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~-~~~~-~~l-~k~~~~a~~~g~~~~i~ig~ 381 (397)
T TIGR00442 323 PDVYVVPLGEEAELEALKLAQKLRKAGIRVEV-DLGG-RKL-KKQLKYADKLGARFAVILGE 381 (397)
T ss_pred CcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEE-eCCC-CCH-HHHHHHHHHcCCCEEEEECh
Confidence 4788888774 567789999999999999976 3332 344 334443322 4567788765
No 344
>cd06067 H2MP_MemB-H2evol Endopeptidases belonging to membrane-bound hydrogen evolving hydrogenase group. In hydrogenase 3 from E coli, the maturation of the large subunit (HycE) requires the cleavage of a C-terminal peptide by the endopeptidase HycI, before the final formation of the [NiFe] metallocenter. HycI protease is a monomer and lacks characteristic signature motifs of serine, zinc, cysteine, or acid proteases and thus its cleavage reaction is not inhibited by conventional inhibitors of serine and metalloproteases. Such hydrogenases as those from Methanosarcina barkeri (EchCE) and Rhodospirillum rubrum (CooLH) also belong to this group of membrane-bound hydrogen evolving hydrogenase. Sequence comparison of the large subunits from related hydrogenase indicates that in contrast to EchE (358 amino acids) and CooH (361 amino acids), the large subunit HycE (569 amino acids) contains an extra carboxy-terminal stretch of 32 amino acids that is cleaved during the maturation process. In
Probab=31.01 E-value=1.8e+02 Score=24.26 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=28.5
Q ss_pred EEEechhHH----HHHHHHHHHHhc-CCceeEEEeccccCCCHHHHHHHHh--cCCeEEEEec
Q 017513 243 ITAFSKIVG----LSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVR--KTNRLVTVEE 298 (370)
Q Consensus 243 Iia~G~~~~----~al~Aa~~L~~~-Gi~v~Vi~~~~l~P~d~~~i~~~~~--~~~~vvvvEe 298 (370)
|+++|+... ....+++.|++. .-+++++|..+ -|++ +...+. +++++|+||-
T Consensus 2 VlGiGN~L~~DDgvG~~v~~~L~~~~~~~v~vid~gt-~~~~---~~~~l~~~~~d~vIiVDA 60 (136)
T cd06067 2 LLGVGNELRGDDGAGPLLAEKLEDLPNPNWLVIDGGT-VPEN---FTGKIREEKPDLIVIVDA 60 (136)
T ss_pred EEEeCccccccCcHHHHHHHHHHhcCCCCEEEEECCC-CHHH---HHHHHHhcCCCEEEEEEC
Confidence 566665542 344566666554 23477787766 2322 222232 5677777775
No 345
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=30.85 E-value=1.2e+02 Score=25.82 Aligned_cols=52 Identities=21% Similarity=0.359 Sum_probs=35.2
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEE
Q 017513 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTV 296 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvv 296 (370)
+|++++|++-+..+... .+..|.++|..+.+.+-++ ..+.+.+++.+-|++.
T Consensus 27 ~gk~v~VvGrs~~vG~p--la~lL~~~gatV~~~~~~t------~~l~~~v~~ADIVvsA 78 (140)
T cd05212 27 DGKKVLVVGRSGIVGAP--LQCLLQRDGATVYSCDWKT------IQLQSKVHDADVVVVG 78 (140)
T ss_pred CCCEEEEECCCchHHHH--HHHHHHHCCCEEEEeCCCC------cCHHHHHhhCCEEEEe
Confidence 45678887777776665 4566778898888887655 2355667777655443
No 346
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=30.72 E-value=4.2e+02 Score=24.64 Aligned_cols=110 Identities=12% Similarity=0.042 Sum_probs=59.7
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhc
Q 017513 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEES 317 (370)
Q Consensus 238 g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~ 317 (370)
.-++.|++.|.......+.+ ++.+..-.|. .+-.++.+.+.+.++..+- +++-......|++..+.++++-
T Consensus 218 ~~~l~i~G~g~~~~~~~~~~---~~~~~~~~V~---~~g~v~~~~~~~~~~~ad~-~i~ps~~~~e~~g~~~~Ea~~~-- 288 (357)
T cd03795 218 DAPLVIVGEGPLEAELEALA---AALGLLDRVR---FLGRLDDEEKAALLAACDV-FVFPSVERSEAFGIVLLEAMAF-- 288 (357)
T ss_pred CcEEEEEeCChhHHHHHHHH---HhcCCcceEE---EcCCCCHHHHHHHHHhCCE-EEeCCcccccccchHHHHHHHc--
Confidence 45677777776544333333 2334444443 3445567777788877764 4444333335667677777753
Q ss_pred cCCCCCCEEEEecCCCCCCCHHHHHH--HhC-----CCHHHHHHHHHHHHhccc
Q 017513 318 FGYLDAPVERIAGADVPMPYAANLER--MAV-----PQVEDIVRAAKRACYRSV 364 (370)
Q Consensus 318 ~~~l~~~~~~ig~~d~~~~~~~~l~~--~~g-----l~~~~I~~~i~~~l~~~~ 364 (370)
+.|+..- |... ..+.+.. ..| -|++++++++.+++...+
T Consensus 289 ----g~Pvi~~---~~~~-~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~ 334 (357)
T cd03795 289 ----GKPVIST---EIGT-GGSYVNLHGVTGLVVPPGDPAALAEAIRRLLEDPE 334 (357)
T ss_pred ----CCCEEec---CCCC-chhHHhhCCCceEEeCCCCHHHHHHHHHHHHHCHH
Confidence 3566432 2111 1122221 112 268999999999986543
No 347
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=30.33 E-value=1.3e+02 Score=28.67 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=36.0
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccc----------cCCCHHHHHHHHhcCCeEE
Q 017513 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI----------RPLDRSTINASVRKTNRLV 294 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l----------~P~d~~~i~~~~~~~~~vv 294 (370)
.+++++|+++|..-.. ++..|+..|.++.++|-+.- ++.+.+.+.+.+.+.+-|+
T Consensus 151 ~g~kvlViG~G~iG~~---~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI 215 (296)
T PRK08306 151 HGSNVLVLGFGRTGMT---LARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIF 215 (296)
T ss_pred CCCEEEEECCcHHHHH---HHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEE
Confidence 4678999999985544 55566677888988877631 2233445556666665444
No 348
>PRK11761 cysM cysteine synthase B; Provisional
Probab=30.17 E-value=3.8e+02 Score=25.50 Aligned_cols=160 Identities=11% Similarity=0.095 Sum_probs=85.8
Q ss_pred CCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEe-eeCCcEEEEEechhHH
Q 017513 173 VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIE-REGKDVTITAFSKIVG 251 (370)
Q Consensus 173 iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl-~~g~dv~Iia~G~~~~ 251 (370)
.|+..|+..++-+-...+-..+-...-|+.|..|... + . .|.+.+ .-|+++.++..+....
T Consensus 61 ~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~-----------~--~-----~k~~~~~~~GA~v~~~~~~~~~~ 122 (296)
T PRK11761 61 KPGDTLIEATSGNTGIALAMIAAIKGYRMKLIMPENM-----------S--Q-----ERRAAMRAYGAELILVPKEQGME 122 (296)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCC-----------C--H-----HHHHHHHHcCCEEEEeCCCCChH
Confidence 3677899999999998888878778889988754321 0 0 011111 2356666665433456
Q ss_pred HHHHHHHHHHhcCCceeEEEeccccCCCHH------------HHHHHHh-cCCeEEEEecCCCCCChHHHHHHHHHhhcc
Q 017513 252 LSLKAAEILAKEGISAEVINLRSIRPLDRS------------TINASVR-KTNRLVTVEEGFPQHGVGAEICASVIEESF 318 (370)
Q Consensus 252 ~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~------------~i~~~~~-~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~ 318 (370)
.+.+.+++|.+++ ..- .+.||+.. .|.+.+. +.+ .|++--+ .||+-.-++..+.+..
T Consensus 123 ~~~~~a~~l~~~~-~~~-----~~~~~~n~~~~~~~~~t~~~Ei~eq~~~~~d-~iv~~vG--~Gg~~~Gi~~~lk~~~- 192 (296)
T PRK11761 123 GARDLALQMQAEG-EGK-----VLDQFANPDNPLAHYETTGPEIWRQTEGRIT-HFVSSMG--TTGTIMGVSRYLKEQN- 192 (296)
T ss_pred HHHHHHHHHHhcc-CCE-----ecCCCCChhhHHHHhhchHHHHHHhcCCCCC-EEEecCC--cHHHHHHHHHHHHHhC-
Confidence 6777777776552 111 22334321 1223232 222 3444433 4777777777776532
Q ss_pred CCCCCCEEEEecCCCCC---C---------CHHH-----HHHHhCCCHHHHHHHHHHHHhccc
Q 017513 319 GYLDAPVERIAGADVPM---P---------YAAN-----LERMAVPQVEDIVRAAKRACYRSV 364 (370)
Q Consensus 319 ~~l~~~~~~ig~~d~~~---~---------~~~~-----l~~~~gl~~~~I~~~i~~~l~~~~ 364 (370)
..++-+++..... + .... +.+....+-+++.++++.++.+..
T Consensus 193 ----~~~kvigVep~~~~~i~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g 251 (296)
T PRK11761 193 ----PAVQIVGLQPEEGSSIPGIRRWPEEYLPKIFDASRVDRVLDVSQQEAENTMRRLAREEG 251 (296)
T ss_pred ----CCCEEEEEecCCCCcCcCCCCCCCCcCCcccChhhCCEEEEECHHHHHHHHHHHHHHhC
Confidence 2334455544211 0 0011 112234677888888888886544
No 349
>PRK00170 azoreductase; Reviewed
Probab=30.06 E-value=2.3e+02 Score=24.78 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhc--CCceeEEEecccc-C-CCH------------------------HHHHHHHhcCCeEEEEecCCC
Q 017513 250 VGLSLKAAEILAKE--GISAEVINLRSIR-P-LDR------------------------STINASVRKTNRLVTVEEGFP 301 (370)
Q Consensus 250 ~~~al~Aa~~L~~~--Gi~v~Vi~~~~l~-P-~d~------------------------~~i~~~~~~~~~vvvvEe~~~ 301 (370)
...+...++.|+++ |.+++++|+.... | ++. +.+.+.+...+.||++= -..
T Consensus 19 ~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~i~~AD~iV~~s-P~y 97 (201)
T PRK00170 19 MQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDELLEEFLAADKIVIAA-PMY 97 (201)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHCCEEEEee-ccc
Confidence 34455567778887 8999999997543 3 221 22345566677665543 334
Q ss_pred CCChHHHHHHHHH
Q 017513 302 QHGVGAEICASVI 314 (370)
Q Consensus 302 ~GGlg~~i~~~l~ 314 (370)
.+++.+.+..++-
T Consensus 98 ~~~~pa~LK~~iD 110 (201)
T PRK00170 98 NFSIPTQLKAYID 110 (201)
T ss_pred ccCCcHHHHHHHH
Confidence 5888888887764
No 350
>PRK13018 cell division protein FtsZ; Provisional
Probab=29.78 E-value=1.8e+02 Score=29.08 Aligned_cols=61 Identities=16% Similarity=0.298 Sum_probs=42.6
Q ss_pred eCCcEEEEEec----hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHH----------HHHHHHhcCCeEEEEecCC
Q 017513 237 EGKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRS----------TINASVRKTNRLVTVEEGF 300 (370)
Q Consensus 237 ~g~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~----------~i~~~~~~~~~vvvvEe~~ 300 (370)
++.|.++|+.| .....+--.++.+++.|+. ++.+ ...||..+ .|.++.+..+.++++++..
T Consensus 111 e~~D~vfI~aGLGGGTGSGaapvIa~iake~g~l--tv~v-Vt~Pf~~EG~~r~~nA~~gL~~L~e~~D~vividNd~ 185 (378)
T PRK13018 111 KGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGAL--VVGV-VTKPFKFEGRARMQKAEEGIERLREAADTVIVIDNNR 185 (378)
T ss_pred cCCCEEEEEeeccCcchhhHHHHHHHHHHHcCCC--eEEE-EEcCcccccHhHHHHHHHHHHHHHHhCCEEEEEecHH
Confidence 57888888765 4456666677777777743 4444 46899866 5667667778899999864
No 351
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=29.60 E-value=2.3e+02 Score=22.87 Aligned_cols=49 Identities=20% Similarity=0.290 Sum_probs=28.8
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEe
Q 017513 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVE 297 (370)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvE 297 (370)
+++|+.-|.. |.++.+.+++.|++.-+|+-. | +.........++++.++
T Consensus 4 kvLIanrGei---a~r~~ra~r~~Gi~tv~v~s~---~---d~~s~~~~~ad~~~~~~ 52 (110)
T PF00289_consen 4 KVLIANRGEI---AVRIIRALRELGIETVAVNSN---P---DTVSTHVDMADEAYFEP 52 (110)
T ss_dssp EEEESS-HHH---HHHHHHHHHHTTSEEEEEEEG---G---GTTGHHHHHSSEEEEEE
T ss_pred EEEEECCCHH---HHHHHHHHHHhCCcceeccCc---h---hcccccccccccceecC
Confidence 5777777776 555666677779988877643 2 22222233455666655
No 352
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=29.44 E-value=3.4e+02 Score=22.68 Aligned_cols=42 Identities=10% Similarity=0.145 Sum_probs=32.4
Q ss_pred CCceeEEEeccccCCCHHHHHHHHhc-CCeEEEE-----ecCCCCCCh
Q 017513 264 GISAEVINLRSIRPLDRSTINASVRK-TNRLVTV-----EEGFPQHGV 305 (370)
Q Consensus 264 Gi~v~Vi~~~~l~P~d~~~i~~~~~~-~~~vvvv-----Ee~~~~GGl 305 (370)
--++++|.+.|.--++.+.+++++++ .+-|+++ |=|+..|..
T Consensus 27 p~~vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~GC~~geCHy~~GN~ 74 (132)
T COG1908 27 PPNVRIIRVMCSGRVNPEFVLKALRKGADGVLVAGCKIGECHYISGNY 74 (132)
T ss_pred CCceEEEEeeccCccCHHHHHHHHHcCCCeEEEecccccceeeeccch
Confidence 34899999999999999998888775 4677765 446666654
No 353
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=29.21 E-value=2.5e+02 Score=23.23 Aligned_cols=80 Identities=8% Similarity=0.090 Sum_probs=39.9
Q ss_pred chhHHHHHHHHHHHHhcCCcee-EEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCE
Q 017513 247 SKIVGLSLKAAEILAKEGISAE-VINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPV 325 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~-Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~ 325 (370)
|++-..|...++.|+++|++++ +.++..+...+. .+.+++.+++.=-.+..|-+...+..++..... .+.++
T Consensus 12 GnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~-----~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~--~~k~~ 84 (140)
T TIGR01754 12 GNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPL-----DPENYDLVFLGTWTWERGRTPDEMKDFIAELGY--KPSNV 84 (140)
T ss_pred ChHHHHHHHHHHHHhhCCeeEEecccccccccCcC-----ChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcc--cCCEE
Confidence 4444445555566666788776 444443221111 123466655543222334455567766654321 13456
Q ss_pred EEEecCCC
Q 017513 326 ERIAGADV 333 (370)
Q Consensus 326 ~~ig~~d~ 333 (370)
..+|..|.
T Consensus 85 avfgtgd~ 92 (140)
T TIGR01754 85 AIFGTGET 92 (140)
T ss_pred EEEEcCCC
Confidence 66776653
No 354
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=29.15 E-value=34 Score=28.14 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=26.4
Q ss_pred eeeCCcEEEEEechhHH--HHHHHHHHHHhcCCceeEEE
Q 017513 235 EREGKDVTITAFSKIVG--LSLKAAEILAKEGISAEVIN 271 (370)
Q Consensus 235 l~~g~dv~Iia~G~~~~--~al~Aa~~L~~~Gi~v~Vi~ 271 (370)
+..+.+++||++|.... .--+..+.|++.||.+.+.|
T Consensus 55 l~~~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~ 93 (117)
T cd05126 55 LEEGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLP 93 (117)
T ss_pred HhcCCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcC
Confidence 34567899999997633 34455668888888877665
No 355
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=29.11 E-value=66 Score=26.29 Aligned_cols=38 Identities=34% Similarity=0.526 Sum_probs=26.7
Q ss_pred eeeCCcEEEEEech--hHHHHHHHHHHHHhcCCceeEEEecc
Q 017513 235 EREGKDVTITAFSK--IVGLSLKAAEILAKEGISAEVINLRS 274 (370)
Q Consensus 235 l~~g~dv~Iia~G~--~~~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (370)
+-++.+++||++|. ++...-+|.+.++++| ++|+-.++
T Consensus 58 lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~--~~vi~~pT 97 (121)
T COG1504 58 LEEGPEVIVVGTGQSGMLELSEEAREFFRKKG--CEVIELPT 97 (121)
T ss_pred HhcCCcEEEEecCceeEEEeCHHHHHHHHhcC--CeEEEeCC
Confidence 34788999999993 4555667777788876 55665454
No 356
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=28.77 E-value=3e+02 Score=27.32 Aligned_cols=62 Identities=23% Similarity=0.251 Sum_probs=36.6
Q ss_pred CcccCEEEEeC-CCCCCCCCCc-chH---HHH-HHHccCCCcEEEeeCCHHHHHHHHHHHHhC---CCCEEEEe
Q 017513 141 QISVPIVFRGP-NGAAAGVGAQ-HSH---CYA-AWYASVPGLKVLSPYSSEDARGLLKAAIRD---PDPVVFLE 205 (370)
Q Consensus 141 ~~~~pvv~~~~-~G~~~~~G~t-Hs~---~~~-a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~---~~Pv~i~~ 205 (370)
..++|+++++. .+. +.++. ..+ ..+ .-...+|++. +.=.|..++...+..|.++ .+|++|-.
T Consensus 186 ~~~lPvvfvveNN~~--aist~~~~~~~~~~~~~~~~~~p~~~-VDG~D~~av~~a~~~A~~~aR~~gP~lIe~ 256 (362)
T PLN02269 186 LWDLPVIFVCENNHY--GMGTAEWRAAKSPAYYKRGDYVPGLK-VDGMDVLAVKQACKFAKEHALSNGPIVLEM 256 (362)
T ss_pred ccCcCEEEEEeCCCE--eccCchhhhccchHHHHhhcCCCeEE-ECCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 47899999884 332 12221 111 111 1123477764 4777888888888877642 78999854
No 357
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=28.28 E-value=1e+02 Score=21.23 Aligned_cols=28 Identities=25% Similarity=0.251 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccc
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSI 275 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l 275 (370)
.....+..|.+.|++.|++.+++|+..-
T Consensus 7 ~~C~~C~~~~~~L~~~~i~y~~~dv~~~ 34 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEKGIPYEEVDVDED 34 (60)
T ss_dssp TTSHHHHHHHHHHHHTTBEEEEEEGGGS
T ss_pred CCCcCHHHHHHHHHHcCCeeeEcccccc
Confidence 5567788899999999999999999874
No 358
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=27.91 E-value=2.4e+02 Score=24.36 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHH-hcCCceeEEEecccc-CC---------CH--HHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHH
Q 017513 250 VGLSLKAAEILA-KEGISAEVINLRSIR-PL---------DR--STINASVRKTNRLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 250 ~~~al~Aa~~L~-~~Gi~v~Vi~~~~l~-P~---------d~--~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
...+..+++.+. +.|.+++++|+.-+. |+ +. +.+.+.+...+.+|++=- ...|++.+.+..++-
T Consensus 16 ~~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP-~Y~~s~~~~LKn~lD 92 (174)
T TIGR03566 16 LALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSP-VYRGSYTGLFKHLFD 92 (174)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECC-cCcCcCcHHHHHHHH
Confidence 334444555555 458999999987652 11 11 246666777776654432 345888888887764
No 359
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=27.80 E-value=1.3e+02 Score=28.57 Aligned_cols=43 Identities=9% Similarity=0.061 Sum_probs=27.3
Q ss_pred EEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHH
Q 017513 242 TITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTIN 284 (370)
Q Consensus 242 ~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~ 284 (370)
+|++.|+.+..+++.++..++.|.++-++-+++..+.+.+.+.
T Consensus 77 vi~gv~~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~ 119 (296)
T TIGR03249 77 VYTGVGGNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLY 119 (296)
T ss_pred EEEecCccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHH
Confidence 4555565566777777666666777777666666665555543
No 360
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=27.75 E-value=3.1e+02 Score=21.72 Aligned_cols=76 Identities=16% Similarity=0.058 Sum_probs=47.2
Q ss_pred cEEEEEechhHHHHHHH----HHHHHhc-C-CceeEEEeccccCCCHHHHHHHHh-cCCeEEEEecCCCCCChHHHHHHH
Q 017513 240 DVTITAFSKIVGLSLKA----AEILAKE-G-ISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEEGFPQHGVGAEICAS 312 (370)
Q Consensus 240 dv~Iia~G~~~~~al~A----a~~L~~~-G-i~v~Vi~~~~l~P~d~~~i~~~~~-~~~~vvvvEe~~~~GGlg~~i~~~ 312 (370)
-++|++-|+.-..+.+. ++.|+++ + ..+.+--+..-.|--.+.+.+..+ +.++++++.=....|.....|...
T Consensus 2 a~llv~HGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle~~~P~~~~~l~~l~~~g~~~i~vvP~fL~~G~h~~~i~~~ 81 (117)
T cd03414 2 AVVLVGRGSSDPDANADVAKIARLLEEGTGFARVETAFAAATRPSLPEALERLRALGARRVVVLPYLLFTGVLMDRIEEQ 81 (117)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCHHHHHHHHHHcCCCEEEEEechhcCCchHHHHHHH
Confidence 36789999775544444 3444444 2 345544444446766777776654 467899998776667766666665
Q ss_pred HHh
Q 017513 313 VIE 315 (370)
Q Consensus 313 l~~ 315 (370)
+.+
T Consensus 82 ~~~ 84 (117)
T cd03414 82 VAE 84 (117)
T ss_pred HHH
Confidence 543
No 361
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=27.50 E-value=4.5e+02 Score=28.27 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=25.1
Q ss_pred HHHHccCCCcEEEee---CCHHHHHHHHHHHHhC-CCCEEEEe
Q 017513 167 AAWYASVPGLKVLSP---YSSEDARGLLKAAIRD-PDPVVFLE 205 (370)
Q Consensus 167 ~a~~~~iP~~~V~~P---~d~~e~~~~l~~a~~~-~~Pv~i~~ 205 (370)
...+++. ||.++.- .|..++..++..+-+. ++|++|..
T Consensus 198 ~~~~~a~-Gw~~~~v~DG~D~~ai~~A~~~a~~~~~~P~~I~~ 239 (653)
T TIGR00232 198 AKRFEAY-GWEVLEVEDGHDLAAIDAAIEEAKASKDKPTLIEV 239 (653)
T ss_pred HHHHHhc-CCcEEEeCCCCCHHHHHHHHHHHHhCCCCCEEEEE
Confidence 4567776 7888765 3555666666666554 48999864
No 362
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=27.46 E-value=1.6e+02 Score=26.73 Aligned_cols=46 Identities=22% Similarity=0.208 Sum_probs=38.5
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHH
Q 017513 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINAS 286 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~ 286 (370)
+++++.|+.-...+-|+..|...|+.|+|+-+..-++...+..+..
T Consensus 53 ~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~ 98 (203)
T COG0062 53 LVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARAN 98 (203)
T ss_pred EEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHH
Confidence 4566788999999999999999999999999888888888766554
No 363
>PRK14012 cysteine desulfurase; Provisional
Probab=26.73 E-value=3.2e+02 Score=26.92 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=14.2
Q ss_pred cCCCHHHHHHHHhcCCeEEEEecCC
Q 017513 276 RPLDRSTINASVRKTNRLVTVEEGF 300 (370)
Q Consensus 276 ~P~d~~~i~~~~~~~~~vvvvEe~~ 300 (370)
.+.|.+.|.+.+++++.++++|+..
T Consensus 159 ~~~~~~~I~~la~~~g~~vivD~a~ 183 (404)
T PRK14012 159 VIQDIAAIGEICRERGIIFHVDAAQ 183 (404)
T ss_pred chhhHHHHHHHHHHcCCEEEEEcch
Confidence 3455666666666665555555543
No 364
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=26.70 E-value=3.7e+02 Score=22.19 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCC
Q 017513 254 LKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300 (370)
Q Consensus 254 l~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~ 300 (370)
..|.+.|++.|++.+ -++-++++...+ .+.+.||++++..
T Consensus 48 ~~a~~~l~~~Gid~s---~h~s~~l~~~~~----~~aDlIi~m~~~~ 87 (141)
T cd00115 48 PRAIAVLAEHGIDIS---GHRARQLTEDDF----DEFDLIITMDESN 87 (141)
T ss_pred HHHHHHHHHcCCCcc---cCeeeeCCHHHH----HhCCEEEEECHHH
Confidence 346677888899864 355566766543 4578899998754
No 365
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=26.60 E-value=77 Score=26.09 Aligned_cols=35 Identities=11% Similarity=0.042 Sum_probs=25.3
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhcCCceeEEEecc
Q 017513 240 DVTITAFSK-IVGLSLKAAEILAKEGISAEVINLRS 274 (370)
Q Consensus 240 dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (370)
++++..+|+ ....+.+.++.|+++|.++.|+==++
T Consensus 2 ~i~l~vtGs~~~~~~~~~l~~L~~~g~~v~vv~S~~ 37 (129)
T PF02441_consen 2 RILLGVTGSIAAYKAPDLLRRLKRAGWEVRVVLSPS 37 (129)
T ss_dssp EEEEEE-SSGGGGGHHHHHHHHHTTTSEEEEEESHH
T ss_pred EEEEEEECHHHHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 467777774 44558889999999999999885443
No 366
>PRK10329 glutaredoxin-like protein; Provisional
Probab=26.45 E-value=2.8e+02 Score=20.79 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=36.8
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHh-cCC--eEEEEecCCCCCChHH
Q 017513 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-KTN--RLVTVEEGFPQHGVGA 307 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~-~~~--~vvvvEe~~~~GGlg~ 307 (370)
++|.+. .....+..+.+.|+++||..+.+|+.. |.+....... ... +++++++.. ..||..
T Consensus 3 v~lYt~-~~Cp~C~~ak~~L~~~gI~~~~idi~~----~~~~~~~~~~~g~~~vPvv~i~~~~-~~Gf~~ 66 (81)
T PRK10329 3 ITIYTR-NDCVQCHATKRAMESRGFDFEMINVDR----VPEAAETLRAQGFRQLPVVIAGDLS-WSGFRP 66 (81)
T ss_pred EEEEeC-CCCHhHHHHHHHHHHCCCceEEEECCC----CHHHHHHHHHcCCCCcCEEEECCEE-EecCCH
Confidence 444443 555778888889999999999999975 3333222211 222 456666543 456553
No 367
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=26.30 E-value=1.9e+02 Score=29.48 Aligned_cols=64 Identities=23% Similarity=0.160 Sum_probs=32.7
Q ss_pred CcccCEEEEeC-CCC--CCCCCCcchHHHH---HHHccCCCcEEEeeCCHHHHHHHHHHHH----hCCCCEEEEe
Q 017513 141 QISVPIVFRGP-NGA--AAGVGAQHSHCYA---AWYASVPGLKVLSPYSSEDARGLLKAAI----RDPDPVVFLE 205 (370)
Q Consensus 141 ~~~~pvv~~~~-~G~--~~~~G~tHs~~~~---a~~~~iP~~~V~~P~d~~e~~~~l~~a~----~~~~Pv~i~~ 205 (370)
..++||++++. .+. +.....+....++ +---.+|++.| .=.|..++...+..|+ +.++|++|-.
T Consensus 249 ~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~V-DG~D~~av~~a~~~A~~~Ar~g~gP~LIe~ 322 (433)
T PLN02374 249 LWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC 322 (433)
T ss_pred HhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEE-CCCCHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 47899999873 332 1111001111122 22224776644 4456666665444444 4578999853
No 368
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=25.95 E-value=1.2e+02 Score=27.09 Aligned_cols=40 Identities=28% Similarity=0.504 Sum_probs=25.2
Q ss_pred ccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhcc
Q 017513 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESF 318 (370)
Q Consensus 273 ~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~ 318 (370)
|+++-|-.+.- +.+++. +|+++ + .||+|++++..|...|+
T Consensus 6 Rqi~l~G~e~Q-~~L~~s-~VlIi--G--~gglG~evak~La~~GV 45 (197)
T cd01492 6 RQIRLWGLEAQ-KRLRSA-RILLI--G--LKGLGAEIAKNLVLSGI 45 (197)
T ss_pred HHHHHhCHHHH-HHHHhC-cEEEE--c--CCHHHHHHHHHHHHcCC
Confidence 33434445533 345554 56665 4 48999999999987653
No 369
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=25.78 E-value=83 Score=24.84 Aligned_cols=35 Identities=20% Similarity=0.055 Sum_probs=22.1
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEE
Q 017513 236 REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270 (370)
Q Consensus 236 ~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi 270 (370)
..+..+++++.+.....+..++..|++.|+++.++
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l 96 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEM 96 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEe
Confidence 34556777765443235666788898889875443
No 370
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=25.75 E-value=4.3e+02 Score=22.64 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=44.2
Q ss_pred EEEechhHHHHHHHHHHHHhc--CCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhc-cC
Q 017513 243 ITAFSKIVGLSLKAAEILAKE--GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEES-FG 319 (370)
Q Consensus 243 Iia~G~~~~~al~Aa~~L~~~--Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~-~~ 319 (370)
+|-|+|+.....+.|+.+.+. +..+.++++....+ . .+.+++.+++.=-.+-.|.+...+..++.... ..
T Consensus 3 ~IiY~S~tGnTe~vA~~Ia~~l~~~~~~i~~~~~~~~---~----~l~~~d~ii~gspty~~g~~p~~~~~fl~~l~~~~ 75 (167)
T TIGR01752 3 GIFYGTDTGNTEGIAEKIQKELGEDDVDVFNIAKASK---E----DLNAYDKLILGTPTWGVGELQEDWEDFLPTLEELD 75 (167)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCceEEEEcccCCH---h----HHhhCCEEEEEecCCCCCcCcHHHHHHHHHhhcCC
Confidence 455677777777777766543 23467777655432 2 24467666654433334556555555544311 00
Q ss_pred CCCCCEEEEecCCC
Q 017513 320 YLDAPVERIAGADV 333 (370)
Q Consensus 320 ~l~~~~~~ig~~d~ 333 (370)
.-+.++.-+|.-|.
T Consensus 76 l~gk~v~~fg~g~~ 89 (167)
T TIGR01752 76 FTGKTVALFGLGDQ 89 (167)
T ss_pred CCCCEEEEEecCCC
Confidence 11346666776543
No 371
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=25.66 E-value=4e+02 Score=25.56 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEE-EecCCCCCC----hHHHHHHHHHhhccCCCC
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVT-VEEGFPQHG----VGAEICASVIEESFGYLD 322 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvv-vEe~~~~GG----lg~~i~~~l~~~~~~~l~ 322 (370)
....+-..-++.|.+.||++++|--. .+-..+++.++|++ .|-=..+|| .|+.....++.+ .+
T Consensus 150 rP~~~G~~~a~~L~~~gI~vtlI~Ds--------a~~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~----~~ 217 (301)
T TIGR00511 150 RPRKQGHITAKELRDYGIPVTLIVDS--------AVRYFMKEVDHVVVGADAITANGALINKIGTSQLALAARE----AR 217 (301)
T ss_pred CCcchHHHHHHHHHHCCCCEEEEehh--------HHHHHHHhCCEEEECccEEecCCCEEEHHhHHHHHHHHHH----hC
Confidence 33334445677888899999988432 34445666777655 232223343 566666666553 24
Q ss_pred CCEEEEe
Q 017513 323 APVERIA 329 (370)
Q Consensus 323 ~~~~~ig 329 (370)
.|+.-++
T Consensus 218 vPv~V~a 224 (301)
T TIGR00511 218 VPFMVAA 224 (301)
T ss_pred CCEEEEc
Confidence 6765544
No 372
>PRK10307 putative glycosyl transferase; Provisional
Probab=25.47 E-value=4.2e+02 Score=25.90 Aligned_cols=107 Identities=11% Similarity=0.016 Sum_probs=53.9
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCC--hHHHHHHHHHhh
Q 017513 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHG--VGAEICASVIEE 316 (370)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GG--lg~~i~~~l~~~ 316 (370)
..++|++.|.......+.+ ++.|++ . +.++-..+.+.+.+.++..+-.+ +-.....++ +.+.+.++++-
T Consensus 260 ~~l~ivG~g~~~~~l~~~~---~~~~l~-~---v~f~G~~~~~~~~~~~~~aDi~v-~ps~~e~~~~~~p~kl~eama~- 330 (412)
T PRK10307 260 LIFVICGQGGGKARLEKMA---QCRGLP-N---VHFLPLQPYDRLPALLKMADCHL-LPQKAGAADLVLPSKLTNMLAS- 330 (412)
T ss_pred eEEEEECCChhHHHHHHHH---HHcCCC-c---eEEeCCCCHHHHHHHHHhcCEeE-EeeccCcccccCcHHHHHHHHc-
Confidence 3566666666544333222 334654 3 33555667888888888776433 332221111 44555666542
Q ss_pred ccCCCCCCEEEEecCCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHhc
Q 017513 317 SFGYLDAPVERIAGADVPMPYAANLERMAV-----PQVEDIVRAAKRACYR 362 (370)
Q Consensus 317 ~~~~l~~~~~~ig~~d~~~~~~~~l~~~~g-----l~~~~I~~~i~~~l~~ 362 (370)
+.|+..-.... ....+... ..| -|++++++++.+++..
T Consensus 331 -----G~PVi~s~~~g--~~~~~~i~-~~G~~~~~~d~~~la~~i~~l~~~ 373 (412)
T PRK10307 331 -----GRNVVATAEPG--TELGQLVE-GIGVCVEPESVEALVAAIAALARQ 373 (412)
T ss_pred -----CCCEEEEeCCC--chHHHHHh-CCcEEeCCCCHHHHHHHHHHHHhC
Confidence 35664321111 11112221 122 2688899999888753
No 373
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=25.46 E-value=4.7e+02 Score=23.04 Aligned_cols=52 Identities=15% Similarity=0.008 Sum_probs=31.2
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcC--CceeEE-Eecccc-CCCHHHHHHHHhc
Q 017513 238 GKDVTITAFSKIVGLSLKAAEILAKEG--ISAEVI-NLRSIR-PLDRSTINASVRK 289 (370)
Q Consensus 238 g~dv~Iia~G~~~~~al~Aa~~L~~~G--i~v~Vi-~~~~l~-P~d~~~i~~~~~~ 289 (370)
...+++||.|+.+...+..++.+.+++ -++.++ ..++-. .+-.+.|.+..++
T Consensus 95 ~~~~vlia~GtGiap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~~~~~~l~~l~~~ 150 (216)
T cd06198 95 RARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDELRALAAA 150 (216)
T ss_pred CceEEEEccccCHHHHHHHHHHHHhcCCCceEEEEEEECCHHHhhhHHHHHHHHHh
Confidence 457999999998888777777765554 356655 333321 1223445554443
No 374
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=25.41 E-value=3.5e+02 Score=25.09 Aligned_cols=71 Identities=17% Similarity=0.203 Sum_probs=44.0
Q ss_pred cCceEEee-eCCcEEEEEechhHHHHHHHHHHHHhcC--CceeEEE-eccc-cCCCHHHHHHHHhcCCeEEEEecCC
Q 017513 229 IGKAKIER-EGKDVTITAFSKIVGLSLKAAEILAKEG--ISAEVIN-LRSI-RPLDRSTINASVRKTNRLVTVEEGF 300 (370)
Q Consensus 229 ~Gk~~vl~-~g~dv~Iia~G~~~~~al~Aa~~L~~~G--i~v~Vi~-~~~l-~P~d~~~i~~~~~~~~~vvvvEe~~ 300 (370)
+|++.... .+..+++|+-|..+...+..++.+.++| -++.++- .++- ..+..+.+.+...+ ....++++++
T Consensus 97 ~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~el~~~~~~-~~~~~~~~~~ 172 (252)
T COG0543 97 LGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDELEELAEK-EVHPVTDDGW 172 (252)
T ss_pred CCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcCCCceEEEEEeccChhhcccHHHHHHhhcC-cEEEEECCCC
Confidence 44433332 3445999999999999999999999888 5666554 2222 12344455554433 4556666554
No 375
>PRK02948 cysteine desulfurase; Provisional
Probab=25.33 E-value=2.6e+02 Score=27.14 Aligned_cols=26 Identities=19% Similarity=0.019 Sum_probs=16.9
Q ss_pred CCHHHHHHHHhcCCeEEEEecCCCCC
Q 017513 278 LDRSTINASVRKTNRLVTVEEGFPQH 303 (370)
Q Consensus 278 ~d~~~i~~~~~~~~~vvvvEe~~~~G 303 (370)
+|.+.|.+.+++++.++++|+-...|
T Consensus 155 ~~~~~I~~l~~~~~~~vivD~~~~~g 180 (381)
T PRK02948 155 QPIAEIGALLKKYNVLFHSDCVQTFG 180 (381)
T ss_pred hhHHHHHHHHHHcCCEEEEEChhhcc
Confidence 56667777777777677777543334
No 376
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=25.25 E-value=2.4e+02 Score=28.58 Aligned_cols=121 Identities=12% Similarity=0.125 Sum_probs=63.3
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEecccc------------CCCHHHHHHHHhcCCeEEEE--ecCCCC
Q 017513 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIR------------PLDRSTINASVRKTNRLVTV--EEGFPQ 302 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~------------P~d~~~i~~~~~~~~~vvvv--Ee~~~~ 302 (370)
.++.++||+.|-|... +++.|.++|++.-.|--|++. .++.+.+.+.+..++-|++. .-|.+
T Consensus 177 ~~~~vlvIGAGem~~l---va~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~i- 252 (414)
T COG0373 177 KDKKVLVIGAGEMGEL---VAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPI- 252 (414)
T ss_pred ccCeEEEEcccHHHHH---HHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccc-
Confidence 3567999999988876 455677888765555555542 33345566677777755554 22222
Q ss_pred CChHH-HHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcccccc
Q 017513 303 HGVGA-EICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPMA 367 (370)
Q Consensus 303 GGlg~-~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~l~~~~~~~ 367 (370)
+.. .+-+.+..+. ..-+.-+++|...-+....+...+.+|.|++..-+.+-++.+++.+
T Consensus 253 --i~~~~ve~a~~~r~----~~livDiavPRdie~~v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~ 312 (414)
T COG0373 253 --ITREMVERALKIRK----RLLIVDIAVPRDVEPEVGELPNVFLYTIDDLEEIVEENLEARKEEA 312 (414)
T ss_pred --cCHHHHHHHHhccc----CeEEEEecCCCCCCccccCcCCeEEEehhhHHHHHHHhHHHHHHHH
Confidence 221 2222222211 0123456665433222122333345677777666666555444443
No 377
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=25.22 E-value=3.2e+02 Score=21.02 Aligned_cols=74 Identities=19% Similarity=0.142 Sum_probs=43.4
Q ss_pred EEEEEechhHHHHHHH----HHHHHhc--CCceeEEEeccccCCCHHHHHHHHh-cCCeEEEEecCCCCCChH-HHHHHH
Q 017513 241 VTITAFSKIVGLSLKA----AEILAKE--GISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEEGFPQHGVG-AEICAS 312 (370)
Q Consensus 241 v~Iia~G~~~~~al~A----a~~L~~~--Gi~v~Vi~~~~l~P~d~~~i~~~~~-~~~~vvvvEe~~~~GGlg-~~i~~~ 312 (370)
++|++-|+....+.+. ++.|++. +..+.+--+..-.|--.+.+.+..+ ..++|+++.-....|... ..|.+.
T Consensus 2 ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle~~~p~~~~~l~~l~~~g~~~v~vvPlfl~~G~h~~~dip~~ 81 (101)
T cd03416 2 LLLVGHGSRDPRAAEALEALAERLRERLPGDEVELAFLELAEPSLAEALDELAAQGATRIVVVPLFLLAGGHVKEDIPAA 81 (101)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEEEEcCCCCHHHHHHHHHHcCCCEEEEEeeEeCCCccccccHHHH
Confidence 6788999877655444 4445444 2344443333336766777776555 357888888766555533 245544
Q ss_pred HH
Q 017513 313 VI 314 (370)
Q Consensus 313 l~ 314 (370)
+.
T Consensus 82 ~~ 83 (101)
T cd03416 82 LA 83 (101)
T ss_pred HH
Confidence 43
No 378
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=25.16 E-value=2.1e+02 Score=20.55 Aligned_cols=36 Identities=14% Similarity=0.374 Sum_probs=22.0
Q ss_pred HHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCC
Q 017513 256 AAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300 (370)
Q Consensus 256 Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~ 300 (370)
..+.|++.|++++.++- |++ .+. .+...+|+++...
T Consensus 10 ~~~~L~~~g~~v~~~~~----~~~--~l~---~~~~tll~i~~~~ 45 (70)
T PF14258_consen 10 LYQLLEEQGVKVERWRK----PYE--ALE---ADDGTLLVIGPDL 45 (70)
T ss_pred HHHHHHHCCCeeEEecc----cHH--HhC---CCCCEEEEEeCCC
Confidence 45678888988876643 433 342 1444677777763
No 379
>PLN02530 histidine-tRNA ligase
Probab=25.15 E-value=1.7e+02 Score=30.14 Aligned_cols=57 Identities=25% Similarity=0.324 Sum_probs=37.0
Q ss_pred CcEEEEEechh-HHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHh-cCCeEEEEec
Q 017513 239 KDVTITAFSKI-VGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEE 298 (370)
Q Consensus 239 ~dv~Iia~G~~-~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~-~~~~vvvvEe 298 (370)
.|+.|+..+.. ...|++.++.|+++|+++++. +.. +.+ .+.++.+-+ +.+.++++.+
T Consensus 402 ~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd-~~~-~~l-~k~ik~A~k~g~~~iviiG~ 460 (487)
T PLN02530 402 VDDVVFALDEDLQGAAAGVASRLREKGRSVDLV-LEP-KKL-KWVFKHAERIGAKRLVLVGA 460 (487)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEe-cCC-CCH-HHHHHHHHHCCCCEEEEEch
Confidence 47888886644 567999999999999999763 332 334 333543332 3456777765
No 380
>PRK10537 voltage-gated potassium channel; Provisional
Probab=25.03 E-value=2e+02 Score=28.82 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=35.5
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec-------------cccCCCHHHHHHH-HhcCCeEEEE
Q 017513 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR-------------SIRPLDRSTINAS-VRKTNRLVTV 296 (370)
Q Consensus 238 g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~-------------~l~P~d~~~i~~~-~~~~~~vvvv 296 (370)
...++|+++|..... .+++|+++|+++.||+.. .=.|-|.+.++++ +++.+.+++.
T Consensus 240 k~HvII~G~g~lg~~---v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 240 KDHFIICGHSPLAIN---TYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CCeEEEECCChHHHH---HHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEc
Confidence 356889999987654 566788889999888742 1123455555433 4455655553
No 381
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=25.01 E-value=3.4e+02 Score=22.18 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=38.4
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcC-CceeEEEeccccCCCHHHHHHHHhcCCeEEEEe
Q 017513 237 EGKDVTITAFSKIVGLSLKAAEILAKEG-ISAEVINLRSIRPLDRSTINASVRKTNRLVTVE 297 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~G-i~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvE 297 (370)
+-..+.++++|.....|++++-.|.+.+ +.+..++..-..--+.. .+.+...++++.
T Consensus 12 ~~~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~----~~~~~~~vi~is 69 (153)
T cd05009 12 EAKSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIA----LVDEGTPVIFLA 69 (153)
T ss_pred ccCcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhh----hccCCCcEEEEe
Confidence 3457899999999999999888887664 77777765544433333 234444555555
No 382
>PLN02463 lycopene beta cyclase
Probab=24.99 E-value=82 Score=32.15 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=26.4
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCC
Q 017513 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPL 278 (370)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~ 278 (370)
.|++||+.|..-- .+|..|.++|++|.||+.....++
T Consensus 29 ~DVvIVGaGpAGL---alA~~La~~Gl~V~liE~~~~~~~ 65 (447)
T PLN02463 29 VDLVVVGGGPAGL---AVAQQVSEAGLSVCCIDPSPLSIW 65 (447)
T ss_pred ceEEEECCCHHHH---HHHHHHHHCCCeEEEeccCccchh
Confidence 5899999996332 244557778999999998654433
No 383
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=24.82 E-value=2.9e+02 Score=24.77 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=35.0
Q ss_pred cEEEEEech-------hHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEec
Q 017513 240 DVTITAFSK-------IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (370)
Q Consensus 240 dv~Iia~G~-------~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe 298 (370)
+++||..+. ....+.+.++.|++.|+.+.+ |.+.-+.+....-..-..+..-+|++-+
T Consensus 12 qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~-D~r~~~s~g~K~~~ae~~GvP~~I~IG~ 76 (202)
T cd00862 12 QVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHV-DDRDNYTPGWKFNDWELKGVPLRIEIGP 76 (202)
T ss_pred eEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEE-ECCCCCCHhHHHHHHHhCCCCEEEEECc
Confidence 567777653 456788888999999999877 6654324444422222344544444443
No 384
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=24.78 E-value=1.6e+02 Score=26.76 Aligned_cols=55 Identities=25% Similarity=0.202 Sum_probs=34.9
Q ss_pred EEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCe--EEEEecCC
Q 017513 242 TITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNR--LVTVEEGF 300 (370)
Q Consensus 242 ~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~--vvvvEe~~ 300 (370)
-|+++|+.+. +|++.|+|.|+.-+.|-+.+|.--|.. .+..+.++.. |++-|-|.
T Consensus 197 Pi~stGnTV~---~Av~VL~EhgVp~s~IiL~sLF~tP~g-ak~i~~~fP~itiltseihp 253 (267)
T KOG1017|consen 197 PIISTGNTVC---KAVEVLKEHGVPDSNIILVSLFITPTG-AKNITRKFPYITILTSEIHP 253 (267)
T ss_pred eeecCCccHH---HHHHHHHHcCCCcccEEEEEeeecchh-hHHHHHhCCeEEEEeeccee
Confidence 3678888776 566778899998777777666444433 3344555553 45555553
No 385
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=24.70 E-value=2.7e+02 Score=27.45 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=19.9
Q ss_pred CCHHHHHHHHhcCCeEEEEecCCCCCCh
Q 017513 278 LDRSTINASVRKTNRLVTVEEGFPQHGV 305 (370)
Q Consensus 278 ~d~~~i~~~~~~~~~vvvvEe~~~~GGl 305 (370)
.|.+.|.+.+++++.++++|+....|.+
T Consensus 159 ~~~~~I~~l~~~~g~~livD~a~a~g~~ 186 (402)
T TIGR02006 159 QDIAAIGEICRERKVFFHVDAAQSVGKI 186 (402)
T ss_pred ccHHHHHHHHHHcCCEEEEEcchhcCCc
Confidence 5677888888888777778876544433
No 386
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=24.66 E-value=2.4e+02 Score=19.29 Aligned_cols=58 Identities=17% Similarity=0.102 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc-CCeEEEEecCCCCCChHH
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVGA 307 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~-~~~vvvvEe~~~~GGlg~ 307 (370)
.....+.++...|++.|++...+|+..-.. -.+.+.+.... +-.+++++ +...||+..
T Consensus 8 ~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~-~~~~l~~~~~~~~~P~~~~~-~~~igg~~~ 66 (72)
T cd02066 8 STCPYCKRAKRLLESLGIEFEEIDILEDGE-LREELKELSGWPTVPQIFIN-GEFIGGYDD 66 (72)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCCCHH-HHHHHHHHhCCCCcCEEEEC-CEEEecHHH
Confidence 335678888888999999999998865221 11223332221 22345554 445688753
No 387
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=24.65 E-value=3e+02 Score=26.48 Aligned_cols=27 Identities=7% Similarity=0.067 Sum_probs=14.2
Q ss_pred CCHHHHHHHHhcCCeEEEEecCCCCCC
Q 017513 278 LDRSTINASVRKTNRLVTVEEGFPQHG 304 (370)
Q Consensus 278 ~d~~~i~~~~~~~~~vvvvEe~~~~GG 304 (370)
+|.+.|.+.+++++..+++|.-...|+
T Consensus 146 ~~i~~I~~l~~~~g~~livD~~~~~g~ 172 (363)
T TIGR02326 146 NPIEAVAKLAHRHGKVTIVDAMSSFGG 172 (363)
T ss_pred CcHHHHHHHHHHcCCEEEEEccccccC
Confidence 344556666666655555555333333
No 388
>PRK04148 hypothetical protein; Provisional
Probab=24.61 E-value=3.5e+02 Score=22.85 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=24.2
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017513 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 238 g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
+.+++.|++|.....| +.|.+.|.+|..+|+.
T Consensus 17 ~~kileIG~GfG~~vA----~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 17 NKKIVELGIGFYFKVA----KKLKESGFDVIVIDIN 48 (134)
T ss_pred CCEEEEEEecCCHHHH----HHHHHCCCEEEEEECC
Confidence 3569999999655544 3566779999999965
No 389
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.59 E-value=1.9e+02 Score=27.69 Aligned_cols=51 Identities=24% Similarity=0.473 Sum_probs=36.6
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEE
Q 017513 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVT 295 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvv 295 (370)
+|++++||+.|..++.-+ +..|..+|-.+.+.+-++ ..+.+.+++.+-||+
T Consensus 157 ~Gk~vvVIGrs~~VG~pl--a~lL~~~gatVtv~~s~t------~~l~~~~~~ADIVIs 207 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPV--SKLLLQKNASVTILHSRS------KDMASYLKDADVIVS 207 (286)
T ss_pred CCCEEEEECCCchhHHHH--HHHHHHCCCeEEEEeCCc------hhHHHHHhhCCEEEE
Confidence 578899999999887764 556777888888888654 346666777764443
No 390
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=24.54 E-value=5.1e+02 Score=25.32 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=28.2
Q ss_pred HHHHccCCCcEEEee---CCHHHHHHHHHHHHhC-CCCEEEEec
Q 017513 167 AAWYASVPGLKVLSP---YSSEDARGLLKAAIRD-PDPVVFLEN 206 (370)
Q Consensus 167 ~a~~~~iP~~~V~~P---~d~~e~~~~l~~a~~~-~~Pv~i~~~ 206 (370)
..-+++. ||.|+.- .|.+++..++.+|-.. +.|++|...
T Consensus 199 ~~k~~a~-Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~ 241 (332)
T PF00456_consen 199 AKKFEAF-GWNVIEVCDGHDVEAIYAAIEEAKASKGKPTVIIAR 241 (332)
T ss_dssp HHHHHHT-T-EEEEEEETTBHHHHHHHHHHHHHSTSS-EEEEEE
T ss_pred HHHHHHh-hhhhcccccCcHHHHHHHHHHHHHhcCCCCceeecc
Confidence 4567776 8998887 6778888888888776 789999643
No 391
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=24.33 E-value=3.5e+02 Score=21.49 Aligned_cols=37 Identities=5% Similarity=-0.010 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEE
Q 017513 253 SLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVT 295 (370)
Q Consensus 253 al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvv 295 (370)
+.+..+.++++|+++++.-.+ ...+.+.+.+.+-+++
T Consensus 17 a~km~~~a~~~gi~~~i~a~~------~~e~~~~~~~~Dvill 53 (99)
T cd05565 17 ANALNKGAKERGVPLEAAAGA------YGSHYDMIPDYDLVIL 53 (99)
T ss_pred HHHHHHHHHHCCCcEEEEEee------HHHHHHhccCCCEEEE
Confidence 444555677889998866433 4556666777775444
No 392
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=24.31 E-value=4.4e+02 Score=25.53 Aligned_cols=77 Identities=23% Similarity=0.285 Sum_probs=46.5
Q ss_pred EEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEE-----EecCCCCCChHHHHHHHHHhh
Q 017513 242 TITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVT-----VEEGFPQHGVGAEICASVIEE 316 (370)
Q Consensus 242 ~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvv-----vEe~~~~GGlg~~i~~~l~~~ 316 (370)
++|+=+..-.+....++.|++.||.+.+|- .......+++.++|++ ++++....-.|......++.+
T Consensus 148 V~VtESRP~~eG~~~ak~L~~~gI~~~~I~--------Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e 219 (301)
T COG1184 148 VIVTESRPRGEGRIMAKELRQSGIPVTVIV--------DSAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALAARE 219 (301)
T ss_pred EEEEcCCCcchHHHHHHHHHHcCCceEEEe--------chHHHHHHHhCCEEEECccceecCCcEEeccchHHHHHHHHH
Confidence 445555566667788899999999999882 3446667888887654 233222233455444444443
Q ss_pred ccCCCCCCEEEEec
Q 017513 317 SFGYLDAPVERIAG 330 (370)
Q Consensus 317 ~~~~l~~~~~~ig~ 330 (370)
+..|+.-++-
T Consensus 220 ----~~~Pf~v~ae 229 (301)
T COG1184 220 ----LRVPFYVVAE 229 (301)
T ss_pred ----hCCCEEEEee
Confidence 2456655443
No 393
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=24.25 E-value=1.2e+02 Score=23.89 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=16.5
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017513 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
++|+++|.... +.++.|++.++++.+|+..
T Consensus 1 vvI~G~g~~~~---~i~~~L~~~~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGR---EIAEQLKEGGIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHH---HHHHHHHHTTSEEEEEESS
T ss_pred eEEEcCCHHHH---HHHHHHHhCCCEEEEEECC
Confidence 45667765444 3455566666666666643
No 394
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=24.18 E-value=4.6e+02 Score=26.82 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHH------HHHHhcCCeEEEEecCCCCCChHHHHHHHHHhh-cc--
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTI------NASVRKTNRLVTVEEGFPQHGVGAEICASVIEE-SF-- 318 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i------~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~-~~-- 318 (370)
..+..|.+|.+.++++++++-+||-.==--.|++.+ .+.+..+..++|+|.- .|.-+...+....+. ++
T Consensus 166 ~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam--~GQdA~~~A~aF~e~l~itG 243 (451)
T COG0541 166 DPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAM--IGQDAVNTAKAFNEALGITG 243 (451)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecc--cchHHHHHHHHHhhhcCCce
Confidence 355677777777777777877777654445566543 3334444456666643 355555555544432 10
Q ss_pred -------------------CCCCCCEEEEecCCCCC---C-CHHH-HHHH--hCCCHHHHHHHHHHHHh
Q 017513 319 -------------------GYLDAPVERIAGADVPM---P-YAAN-LERM--AVPQVEDIVRAAKRACY 361 (370)
Q Consensus 319 -------------------~~l~~~~~~ig~~d~~~---~-~~~~-l~~~--~gl~~~~I~~~i~~~l~ 361 (370)
.-.+.|+..+|.-...- + +++- ..+. .| |..+++|++.+.+.
T Consensus 244 vIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGMG-Dv~sLvEk~~~~~d 311 (451)
T COG0541 244 VILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGMG-DVLSLIEKAEEVVD 311 (451)
T ss_pred EEEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcCcc-cHHHHHHHHHHhhh
Confidence 01246777777654311 1 1211 1121 24 67777777777774
No 395
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=24.13 E-value=3.9e+02 Score=24.25 Aligned_cols=75 Identities=12% Similarity=0.065 Sum_probs=41.3
Q ss_pred ccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHH-HHh-----CCC
Q 017513 275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLE-RMA-----VPQ 348 (370)
Q Consensus 275 l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~-~~~-----gl~ 348 (370)
+.+++.+.+.+.+..++- ++.-... .|++..+.+.++- +.|+..... ....+.+. ... .-+
T Consensus 261 ~g~~~~~~~~~~~~~~di-~i~~~~~--~~~~~~~~Ea~~~------g~pvI~~~~----~~~~~~~~~~~~g~~~~~~~ 327 (374)
T cd03801 261 LGFVPDEDLPALYAAADV-FVLPSLY--EGFGLVLLEAMAA------GLPVVASDV----GGIPEVVEDGETGLLVPPGD 327 (374)
T ss_pred EeccChhhHHHHHHhcCE-EEecchh--ccccchHHHHHHc------CCcEEEeCC----CChhHHhcCCcceEEeCCCC
Confidence 345556667778877764 4433322 6777778887753 456643221 11112221 011 134
Q ss_pred HHHHHHHHHHHHhc
Q 017513 349 VEDIVRAAKRACYR 362 (370)
Q Consensus 349 ~~~I~~~i~~~l~~ 362 (370)
++++++++.+++..
T Consensus 328 ~~~l~~~i~~~~~~ 341 (374)
T cd03801 328 PEALAEAILRLLDD 341 (374)
T ss_pred HHHHHHHHHHHHcC
Confidence 78899999888754
No 396
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=23.95 E-value=3.1e+02 Score=22.11 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCC
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~ 300 (370)
+.-..+.+|+-+|.++|. ...+.+.-+.- +.+.+.+.+++.+++|++|-..
T Consensus 11 ~~Gqla~~aA~~l~~~~~-~~~~Cla~v~~-~~~~~~~~a~~~~~iIaIDGC~ 61 (110)
T PF08859_consen 11 NVGQLANQAAVELTREGP-GEMSCLAGVGA-GVEGLVKSARSARPIIAIDGCP 61 (110)
T ss_pred hHhHHHHHHHHHHHHcCC-eeEEechhhhc-CcHHHHHHHhcCCceEEECCCH
Confidence 444567888889988885 55555544433 4556778888888999998543
No 397
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.79 E-value=1.1e+02 Score=31.07 Aligned_cols=60 Identities=25% Similarity=0.226 Sum_probs=41.5
Q ss_pred eCCcEEEEEechhH-HHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHh-cCCeEEEEecC
Q 017513 237 EGKDVTITAFSKIV-GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEEG 299 (370)
Q Consensus 237 ~g~dv~Iia~G~~~-~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~-~~~~vvvvEe~ 299 (370)
...|+.|++.|... ..|++.++.||++|+++++--.. +.+ ...++.+-+ ..+.+|++-+.
T Consensus 334 ~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~--r~~-k~q~k~A~~~g~~~~viiGe~ 395 (429)
T COG0124 334 TRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSG--RKL-KKQFKYADKLGARFAVILGED 395 (429)
T ss_pred CCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEecc--ccH-HHHHHHHHHCCCCEEEEEcch
Confidence 35799999999876 88999999999999999876433 333 333443322 23456666654
No 398
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=23.71 E-value=1.3e+02 Score=22.24 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=29.6
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceeEEEeccc--cCCCHHH---HHHHHhcC
Q 017513 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI--RPLDRST---INASVRKT 290 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l--~P~d~~~---i~~~~~~~ 290 (370)
++||+-|. .++|.+..|.+.|.++.+|+..-- .-+|.+. +.+.+++.
T Consensus 2 vvViGgG~---ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~ 53 (80)
T PF00070_consen 2 VVVIGGGF---IGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKR 53 (80)
T ss_dssp EEEESSSH---HHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHT
T ss_pred EEEECcCH---HHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHC
Confidence 56777665 455677788888999999986532 1245543 34445444
No 399
>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B.
Probab=23.68 E-value=1.5e+02 Score=25.36 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=24.4
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhc-CCceeE
Q 017513 238 GKDVTITAFSKIVGLSLKAAEILAKE-GISAEV 269 (370)
Q Consensus 238 g~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~V 269 (370)
...|+|.++|.....|+..+..++++ +++++|
T Consensus 61 ~~~V~v~gtGkAIeKal~la~~Fq~~~~~~V~V 93 (144)
T PF12328_consen 61 SEEVTVKGTGKAIEKALSLALWFQRKKGYKVEV 93 (144)
T ss_dssp -SEEEEEEEGGGHHHHHHHHHHHHHTT---EEE
T ss_pred ccEEEEEeccHHHHHHHHHHHHHhhcCCeEEEE
Confidence 46799999999999999999999765 676654
No 400
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=23.62 E-value=5.5e+02 Score=23.20 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=25.1
Q ss_pred CCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEec
Q 017513 174 PGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN 206 (370)
Q Consensus 174 P~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~ 206 (370)
|+..|+.+++.+-...+-..+-...-|+++..|
T Consensus 49 ~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p 81 (244)
T cd00640 49 PKGVIIESTGGNTGIALAAAAARLGLKCTIVMP 81 (244)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEEC
Confidence 578899998877777777666666778888654
No 401
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=23.59 E-value=2.7e+02 Score=24.55 Aligned_cols=45 Identities=4% Similarity=0.003 Sum_probs=31.8
Q ss_pred EEEEEechhH----HHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHh
Q 017513 241 VTITAFSKIV----GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR 288 (370)
Q Consensus 241 v~Iia~G~~~----~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~ 288 (370)
++|++-|..- ....++++.|+++||++-+|-+-.. +.+.++....
T Consensus 112 ~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~---~~~el~~ia~ 160 (192)
T cd01473 112 TMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAA---SENKLKLLAG 160 (192)
T ss_pred EEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEeccc---cHHHHHHhcC
Confidence 5566667432 3466788899999999999988763 5666765543
No 402
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=23.54 E-value=2.6e+02 Score=27.47 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=35.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCH--------HHHHHHHhcCCeEE
Q 017513 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDR--------STINASVRKTNRLV 294 (370)
Q Consensus 238 g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~--------~~i~~~~~~~~~vv 294 (370)
|+.+.||++|++-.. .+..|+..|+++.+.+-+ -+..+. ..+.+++++.+-|+
T Consensus 16 gKtVGIIG~GsIG~a---mA~nL~d~G~~ViV~~r~-~~s~~~A~~~G~~v~sl~Eaak~ADVV~ 76 (335)
T PRK13403 16 GKTVAVIGYGSQGHA---QAQNLRDSGVEVVVGVRP-GKSFEVAKADGFEVMSVSEAVRTAQVVQ 76 (335)
T ss_pred cCEEEEEeEcHHHHH---HHHHHHHCcCEEEEEECc-chhhHHHHHcCCEECCHHHHHhcCCEEE
Confidence 567999999998764 455688889999887633 222211 13667777776543
No 403
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=23.53 E-value=2.3e+02 Score=24.22 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc-----CCeEEEEecCCCCCChHH
Q 017513 249 IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-----TNRLVTVEEGFPQHGVGA 307 (370)
Q Consensus 249 ~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~-----~~~vvvvEe~~~~GGlg~ 307 (370)
..+.+..|.+.|++.||+...+|+..-..+ .+.|.+.+.. +-+.|+|...+ .||..+
T Consensus 15 t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~-~~EL~~~~g~~~~~~tvPqVFI~G~~-IGG~de 76 (147)
T cd03031 15 TFEDCNNVRAILESFRVKFDERDVSMDSGF-REELRELLGAELKAVSLPRVFVDGRY-LGGAEE 76 (147)
T ss_pred cChhHHHHHHHHHHCCCcEEEEECCCCHHH-HHHHHHHhCCCCCCCCCCEEEECCEE-EecHHH
Confidence 567788888899999999999998742112 3345554432 22457777654 487654
No 404
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=23.33 E-value=2.1e+02 Score=30.62 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=10.2
Q ss_pred CCHHHHHHHHHHHHhcc
Q 017513 347 PQVEDIVRAAKRACYRS 363 (370)
Q Consensus 347 l~~~~I~~~i~~~l~~~ 363 (370)
++-+++.+.+.+.++..
T Consensus 622 i~l~el~~~l~~~~~~~ 638 (639)
T PRK12444 622 IELDMFVESIKEEIKNR 638 (639)
T ss_pred eeHHHHHHHHHHHhhcC
Confidence 45566666666665543
No 405
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=23.27 E-value=3.8e+02 Score=26.49 Aligned_cols=112 Identities=21% Similarity=0.233 Sum_probs=66.3
Q ss_pred EEEechhHHHHHHHHHHHHhc-CCceeEEEeccccCCCHHH-----------HHHHHhcCCeEEEEecCCCCCChHHHHH
Q 017513 243 ITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRST-----------INASVRKTNRLVTVEEGFPQHGVGAEIC 310 (370)
Q Consensus 243 Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~l~P~d~~~-----------i~~~~~~~~~vvvvEe~~~~GGlg~~i~ 310 (370)
++=+|.....+.+++++|.++ |.. .+-|||... +.+.+...-..|+|.=+ -|||.+-|+
T Consensus 123 Vil~g~~~dda~~~a~~~a~~~G~~-------~i~pfD~p~viAGQGTi~lEileq~~~~~d~v~vpvG--GGGLisGia 193 (347)
T COG1171 123 VILHGDNFDDAYAAAEELAEEEGLT-------FVPPFDDPDVIAGQGTIALEILEQLPDLPDAVFVPVG--GGGLISGIA 193 (347)
T ss_pred EEEECCCHHHHHHHHHHHHHHcCCE-------EeCCCCCcceeecccHHHHHHHHhccccCCEEEEecC--ccHHHHHHH
Confidence 445688889999999988644 643 578998752 22333333134555654 388888888
Q ss_pred HHHHhhccCCCCCCEEEEecCCCCCC--------------------------------CH-HHHHH----HhCCCHHHHH
Q 017513 311 ASVIEESFGYLDAPVERIAGADVPMP--------------------------------YA-ANLER----MAVPQVEDIV 353 (370)
Q Consensus 311 ~~l~~~~~~~l~~~~~~ig~~d~~~~--------------------------------~~-~~l~~----~~gl~~~~I~ 353 (370)
.++.... +.++-||++..-.+ .. +.+++ ....+.+.|.
T Consensus 194 ~~~k~~~-----p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~tf~i~~~~vd~~v~V~e~ei~ 268 (347)
T COG1171 194 TALKALS-----PEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEILRELVDDIVLVDEDEIC 268 (347)
T ss_pred HHHHHhC-----CCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCCCHHHHHHHHHcCCcEEEECHHHHH
Confidence 8876532 23444555432110 00 11222 1236788888
Q ss_pred HHHHHHHhccccccc
Q 017513 354 RAAKRACYRSVPMAA 368 (370)
Q Consensus 354 ~~i~~~l~~~~~~~~ 368 (370)
++++.++.+.+-|+.
T Consensus 269 ~am~~l~~~~~iI~E 283 (347)
T COG1171 269 AAMRDLFERTKIIAE 283 (347)
T ss_pred HHHHHHHhcCCeecc
Confidence 888888887776653
No 406
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=23.09 E-value=1.8e+02 Score=25.32 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=33.5
Q ss_pred EEEEEechh----HHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEe
Q 017513 241 VTITAFSKI----VGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVE 297 (370)
Q Consensus 241 v~Iia~G~~----~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvE 297 (370)
+++++=|.. .....++++.++++||.+-.|-+. +.+.+.|.+.....+..+.++
T Consensus 113 iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig---~~~~~~L~~IA~~~~~~~~~~ 170 (186)
T cd01480 113 LLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVG---SQNEEPLSRIACDGKSALYRE 170 (186)
T ss_pred EEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecC---ccchHHHHHHHcCCcchhhhc
Confidence 445555532 223456778888999998888654 478888777655444333333
No 407
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.05 E-value=6.6e+02 Score=24.14 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=43.0
Q ss_pred CCcEEEEEech-----hHHHHHHHHHHHHhcCC-ceeEEEecccc-----------CCCHHHHHHHHhc--CCeEEEEec
Q 017513 238 GKDVTITAFSK-----IVGLSLKAAEILAKEGI-SAEVINLRSIR-----------PLDRSTINASVRK--TNRLVTVEE 298 (370)
Q Consensus 238 g~dv~Iia~G~-----~~~~al~Aa~~L~~~Gi-~v~Vi~~~~l~-----------P~d~~~i~~~~~~--~~~vvvvEe 298 (370)
|.|+.||.+.. .+-+.+-.++.|++.|- ++.+|=+..-+ |+....+.+.+.. .++|+++|-
T Consensus 36 g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~va~lL~~~g~d~vitvD~ 115 (304)
T PRK03092 36 GCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPFYPYARQDKKHRGREPISARLVADLFKTAGADRIMTVDL 115 (304)
T ss_pred CCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEecccccccccccCCCCCccHHHHHHHHHhcCCCeEEEEec
Confidence 68898888742 23344556777877776 46666443322 6777777777765 589999999
Q ss_pred CC
Q 017513 299 GF 300 (370)
Q Consensus 299 ~~ 300 (370)
|.
T Consensus 116 H~ 117 (304)
T PRK03092 116 HT 117 (304)
T ss_pred Ch
Confidence 96
No 408
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=23.02 E-value=5e+02 Score=24.41 Aligned_cols=12 Identities=25% Similarity=0.246 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhc
Q 017513 252 LSLKAAEILAKE 263 (370)
Q Consensus 252 ~al~Aa~~L~~~ 263 (370)
.|+|++-+|+++
T Consensus 40 ~AlE~Alrlke~ 51 (256)
T PRK03359 40 NAIEAACQLKQQ 51 (256)
T ss_pred HHHHHHHHHhhh
Confidence 344444455444
No 409
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=23.01 E-value=6e+02 Score=23.39 Aligned_cols=80 Identities=9% Similarity=-0.040 Sum_probs=41.0
Q ss_pred eccccCCCHHHHHHHHhcCCeEEEEecCCC---CCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHH---Hh
Q 017513 272 LRSIRPLDRSTINASVRKTNRLVTVEEGFP---QHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLER---MA 345 (370)
Q Consensus 272 ~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~---~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~---~~ 345 (370)
+..+-.++.+.+.+.+...+-++ +-.... .+++...+.+.++- +.|+..... .. ..+.+.+ .+
T Consensus 277 v~~~g~~~~~~~~~~~~~~di~i-~~~~~~~~~~~~~p~~~~Ea~~~------G~pvi~~~~---~~-~~~~~~~~~~g~ 345 (394)
T cd03794 277 VTFLGRVPKEELPELLAAADVGL-VPLKPGPAFEGVSPSKLFEYMAA------GKPVLASVD---GE-SAELVEEAGAGL 345 (394)
T ss_pred EEEeCCCChHHHHHHHHhhCeeE-EeccCcccccccCchHHHHHHHC------CCcEEEecC---CC-chhhhccCCcce
Confidence 33444677777888888776444 332221 23344456666652 456643211 11 1111111 11
Q ss_pred --C-CCHHHHHHHHHHHHhc
Q 017513 346 --V-PQVEDIVRAAKRACYR 362 (370)
Q Consensus 346 --g-l~~~~I~~~i~~~l~~ 362 (370)
- -|++++++++.+++..
T Consensus 346 ~~~~~~~~~l~~~i~~~~~~ 365 (394)
T cd03794 346 VVPPGDPEALAAAILELLDD 365 (394)
T ss_pred EeCCCCHHHHHHHHHHHHhC
Confidence 1 2788999999998843
No 410
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=22.89 E-value=98 Score=27.17 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=22.2
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017513 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
+++.++||.||+.- .+ -+.-|++.|++|.|-.-.
T Consensus 3 ~~k~IAViGyGsQG-~a--~AlNLrDSG~~V~Vglr~ 36 (165)
T PF07991_consen 3 KGKTIAVIGYGSQG-HA--HALNLRDSGVNVIVGLRE 36 (165)
T ss_dssp CTSEEEEES-SHHH-HH--HHHHHHHCC-EEEEEE-T
T ss_pred CCCEEEEECCChHH-HH--HHHHHHhCCCCEEEEecC
Confidence 35789999999883 33 345689999988765433
No 411
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.83 E-value=1e+02 Score=22.71 Aligned_cols=55 Identities=24% Similarity=0.236 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhc
Q 017513 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEES 317 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~ 317 (370)
...+.|+++-+.|+++|++++++ |.|.+ | -..++-.+-++... -+.+.+.+.+++
T Consensus 9 ~st~~a~~~ek~lk~~gi~~~li------P~P~~-i---~~~CG~al~~~~~d-----~~~i~~~l~~~~ 63 (73)
T PF11823_consen 9 PSTHDAMKAEKLLKKNGIPVRLI------PTPRE-I---SAGCGLALRFEPED-----LEKIKEILEENG 63 (73)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEe------CCChh-c---cCCCCEEEEEChhh-----HHHHHHHHHHCC
Confidence 34567888999999999999988 56655 2 23466556665533 245666666654
No 412
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=22.63 E-value=2.3e+02 Score=29.66 Aligned_cols=11 Identities=0% Similarity=0.283 Sum_probs=5.6
Q ss_pred CCHHHHHHHHH
Q 017513 347 PQVEDIVRAAK 357 (370)
Q Consensus 347 l~~~~I~~~i~ 357 (370)
++.+++++.++
T Consensus 550 v~~~el~~~i~ 560 (563)
T TIGR00418 550 MSLDEFLEKLR 560 (563)
T ss_pred eeHHHHHHHHH
Confidence 34555555543
No 413
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=22.62 E-value=1.4e+02 Score=26.41 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=25.4
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCcee
Q 017513 240 DVTITAFSKIVGLSLKAAEILAKEGISAE 268 (370)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~ 268 (370)
...|++|......|.|.|.+|+++|..+.
T Consensus 67 p~~L~G~S~Gg~lA~E~A~~Le~~G~~v~ 95 (229)
T PF00975_consen 67 PYVLAGWSFGGILAFEMARQLEEAGEEVS 95 (229)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTT-SES
T ss_pred CeeehccCccHHHHHHHHHHHHHhhhccC
Confidence 68899999999999999999999999775
No 414
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=22.59 E-value=2.3e+02 Score=24.80 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC-eEEEEec
Q 017513 253 SLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEE 298 (370)
Q Consensus 253 al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~-~vvvvEe 298 (370)
..++++.++++||.+.+|-+-. +.+.|++..+.++ +-..+++
T Consensus 125 ~~~~~~~l~~~~I~v~~IgiG~----~~~~L~~ia~~tgG~~~~~~~ 167 (183)
T cd01453 125 IYETIDKLKKENIRVSVIGLSA----EMHICKEICKATNGTYKVILD 167 (183)
T ss_pred HHHHHHHHHHcCcEEEEEEech----HHHHHHHHHHHhCCeeEeeCC
Confidence 3467888989999999998753 3456777777665 5555544
No 415
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=22.40 E-value=6.3e+02 Score=23.70 Aligned_cols=107 Identities=10% Similarity=0.049 Sum_probs=57.2
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCC----CCCChHHHHHHHHH
Q 017513 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF----PQHGVGAEICASVI 314 (370)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~----~~GGlg~~i~~~l~ 314 (370)
..++|++.|.......+. .++.|+.-.| ..+-+.+.+.+.+.++..+- +++-.-. ..-|++..+.+.++
T Consensus 220 ~~l~ivG~g~~~~~~~~~---~~~~~~~~~v---~~~g~~~~~~l~~~~~~ad~-~v~ps~~~~~~~~E~~~~~~~EA~a 292 (367)
T cd05844 220 VRLVIIGDGPLLAALEAL---ARALGLGGRV---TFLGAQPHAEVRELMRRARI-FLQPSVTAPSGDAEGLPVVLLEAQA 292 (367)
T ss_pred eEEEEEeCchHHHHHHHH---HHHcCCCCeE---EECCCCCHHHHHHHHHhCCE-EEECcccCCCCCccCCchHHHHHHH
Confidence 345555555444333322 2333555443 36667888888888888764 3332111 12467777888876
Q ss_pred hhccCCCCCCEEEEecCCCCCCCHHHHHH-Hh-----CCCHHHHHHHHHHHHhc
Q 017513 315 EESFGYLDAPVERIAGADVPMPYAANLER-MA-----VPQVEDIVRAAKRACYR 362 (370)
Q Consensus 315 ~~~~~~l~~~~~~ig~~d~~~~~~~~l~~-~~-----gl~~~~I~~~i~~~l~~ 362 (370)
- +.|+..- |... ..+.+.+ .. --|++++++++.++++.
T Consensus 293 ~------G~PvI~s---~~~~-~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 293 S------GVPVVAT---RHGG-IPEAVEDGETGLLVPEGDVAALAAALGRLLAD 336 (367)
T ss_pred c------CCCEEEe---CCCC-chhheecCCeeEEECCCCHHHHHHHHHHHHcC
Confidence 3 4566421 1111 1111111 11 13788999999988864
No 416
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=22.28 E-value=2.9e+02 Score=27.42 Aligned_cols=105 Identities=8% Similarity=-0.028 Sum_probs=57.2
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCC----CCCChHHHHHHHHHh
Q 017513 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF----PQHGVGAEICASVIE 315 (370)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~----~~GGlg~~i~~~l~~ 315 (370)
.++|++.|..-....+.++ +.|++-.|. .+-..+.+.+.+.++..+- +++-... ..-|++..+.+.++-
T Consensus 255 ~l~ivG~G~~~~~l~~~~~---~~~l~~~V~---~~G~~~~~el~~~l~~aDv-~v~pS~~~~~g~~Eg~p~~llEAma~ 327 (406)
T PRK15427 255 RYRILGIGPWERRLRTLIE---QYQLEDVVE---MPGFKPSHEVKAMLDDADV-FLLPSVTGADGDMEGIPVALMEAMAV 327 (406)
T ss_pred EEEEEECchhHHHHHHHHH---HcCCCCeEE---EeCCCCHHHHHHHHHhCCE-EEECCccCCCCCccCccHHHHHHHhC
Confidence 4677777765444333333 335543222 4456678888888888764 4443221 124677778888763
Q ss_pred hccCCCCCCEEEEecCCCCCCCHHHHHH-HhC-----CCHHHHHHHHHHHHh
Q 017513 316 ESFGYLDAPVERIAGADVPMPYAANLER-MAV-----PQVEDIVRAAKRACY 361 (370)
Q Consensus 316 ~~~~~l~~~~~~ig~~d~~~~~~~~l~~-~~g-----l~~~~I~~~i~~~l~ 361 (370)
+.|+..-.. .+ ..+.+.. ..| -|++++++++.+++.
T Consensus 328 ------G~PVI~t~~---~g-~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 328 ------GIPVVSTLH---SG-IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred ------CCCEEEeCC---CC-chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 456643211 11 1111211 011 278889999998886
No 417
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=22.22 E-value=1.2e+02 Score=30.87 Aligned_cols=34 Identities=29% Similarity=0.266 Sum_probs=27.3
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017513 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
.+.+++||+.| ...+.|+..|++.|.++.|++-.
T Consensus 132 ~~~~V~IIG~G---~aGl~aA~~l~~~G~~V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAG---PAGLACASELAKAGHSVTVFEAL 165 (449)
T ss_pred CCCEEEEECcC---HHHHHHHHHHHHCCCcEEEEecC
Confidence 35689999998 34556788888899999999853
No 418
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=22.09 E-value=3e+02 Score=26.36 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=18.0
Q ss_pred CCHHHHHHHHhcCCeEEEEecCCCCC
Q 017513 278 LDRSTINASVRKTNRLVTVEEGFPQH 303 (370)
Q Consensus 278 ~d~~~i~~~~~~~~~vvvvEe~~~~G 303 (370)
+|.+.|.+.+++.+..+++|+....|
T Consensus 155 ~~~~~I~~l~~~~~~~~ivD~a~~~g 180 (353)
T TIGR03235 155 QPIREIAEVLEAHEAFFHVDAAQVVG 180 (353)
T ss_pred cCHHHHHHHHHHcCCEEEEEchhhcC
Confidence 56677878787777777777754434
No 419
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=22.04 E-value=1.2e+02 Score=29.42 Aligned_cols=34 Identities=32% Similarity=0.283 Sum_probs=27.5
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017513 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
.+.+++||..| ...++++..|.+.|.++.+++..
T Consensus 17 ~~~~VvIIG~G---~aGl~aA~~l~~~g~~v~lie~~ 50 (352)
T PRK12770 17 TGKKVAIIGAG---PAGLAAAGYLACLGYEVHVYDKL 50 (352)
T ss_pred CCCEEEEECcC---HHHHHHHHHHHHCCCcEEEEeCC
Confidence 34689999999 45567888888899999999963
No 420
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.00 E-value=1.7e+02 Score=28.22 Aligned_cols=52 Identities=29% Similarity=0.399 Sum_probs=36.9
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEE
Q 017513 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTV 296 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvv 296 (370)
+|+++++|+.|..++..+ +..|.++|..+.+.|-++- .+.+.+++.+-|++.
T Consensus 158 ~Gk~V~vIG~s~ivG~Pm--A~~L~~~gatVtv~~~~t~------~l~e~~~~ADIVIsa 209 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPM--AALLLQAHCSVTVVHSRST------DAKALCRQADIVVAA 209 (301)
T ss_pred CCCEEEEECCCCccHHHH--HHHHHHCCCEEEEECCCCC------CHHHHHhcCCEEEEe
Confidence 578999999987777665 4457788999999876552 356666677655543
No 421
>PRK08639 threonine dehydratase; Validated
Probab=21.82 E-value=7.2e+02 Score=24.93 Aligned_cols=113 Identities=22% Similarity=0.170 Sum_probs=63.8
Q ss_pred cEEEeeCCHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEe-eeCCcE-EEEEechhHHHH
Q 017513 176 LKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIE-REGKDV-TITAFSKIVGLS 253 (370)
Q Consensus 176 ~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl-~~g~dv-~Iia~G~~~~~a 253 (370)
-.|+..++-+-...+-..|-...-|+.|..|... + ..|...+ .-|+++ .++-.|.....+
T Consensus 74 ~~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~~-----------~-------~~k~~~~r~~GA~vv~v~~~g~~~~~a 135 (420)
T PRK08639 74 AGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTT-----------P-------QQKIDQVRFFGGEFVEIVLVGDTFDDS 135 (420)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEECCCC-----------h-------HHHHHHHHHcCCCeeEEEEeCcCHHHH
Confidence 3588888888888777777777778877644210 0 0010111 225553 234457778888
Q ss_pred HHHHHHHHhc-CCceeEEEeccccCCCHHH-----------HHHHHhc---CCeEEEEecCCCCCChHHHHHHHHHhh
Q 017513 254 LKAAEILAKE-GISAEVINLRSIRPLDRST-----------INASVRK---TNRLVTVEEGFPQHGVGAEICASVIEE 316 (370)
Q Consensus 254 l~Aa~~L~~~-Gi~v~Vi~~~~l~P~d~~~-----------i~~~~~~---~~~vvvvEe~~~~GGlg~~i~~~l~~~ 316 (370)
.+.+.++.++ | ..++.|||... |.+.+.. -+. |++--+ .||+-+-++..+.+.
T Consensus 136 ~~~a~~~a~~~g-------~~~~~~~~~~~~~~G~~tig~EI~eq~~~~~~~D~-vv~~vG--~GG~~aGva~~~k~~ 203 (420)
T PRK08639 136 AAAAQEYAEETG-------ATFIPPFDDPDVIAGQGTVAVEILEQLEKEGSPDY-VFVPVG--GGGLISGVTTYLKER 203 (420)
T ss_pred HHHHHHHHHhcC-------CcccCCCCChhHhcchhHHHHHHHHhccccCCCCE-EEEecC--hhHHHHHHHHHHHHh
Confidence 8777776544 3 34567886431 2222322 233 444544 377777777777653
No 422
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=21.81 E-value=2.6e+02 Score=29.35 Aligned_cols=18 Identities=6% Similarity=0.100 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHHHhccc
Q 017513 347 PQVEDIVRAAKRACYRSV 364 (370)
Q Consensus 347 l~~~~I~~~i~~~l~~~~ 364 (370)
++.+++++.+++.++.+|
T Consensus 556 v~~~~l~~~l~~~~~~~~ 573 (575)
T PRK12305 556 MPLDEFIELIKEKIAERE 573 (575)
T ss_pred eeHHHHHHHHHHHHhccc
Confidence 567788888888876543
No 423
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=21.64 E-value=1.6e+02 Score=29.04 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=26.6
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017513 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
.+.+++||+.|. .++|.+..|++.|.++++|+..
T Consensus 143 ~~~~vvViGgG~---ig~E~A~~l~~~g~~Vtlv~~~ 176 (396)
T PRK09754 143 PERSVVIVGAGT---IGLELAASATQRRCKVTVIELA 176 (396)
T ss_pred cCCeEEEECCCH---HHHHHHHHHHHcCCeEEEEecC
Confidence 467799998884 4667788888889999998753
No 424
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=21.61 E-value=3.7e+02 Score=23.91 Aligned_cols=60 Identities=15% Similarity=0.042 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCceeEEEeccccC---CCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHH
Q 017513 253 SLKAAEILAKEGISAEVINLRSIRP---LDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASV 313 (370)
Q Consensus 253 al~Aa~~L~~~Gi~v~Vi~~~~l~P---~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l 313 (370)
+.++.....+++.++++.|+....| +|.+.=.+.+..++.||+.= -.-..|.-+.+..++
T Consensus 22 ~n~~l~~~~~~~~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~f-Pl~w~~~Pa~LK~wi 84 (184)
T PRK04930 22 ANRVLLKPAQQLEHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQH-PLYTYSCPALLKEWL 84 (184)
T ss_pred HHHHHHHHHHcCCceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEc-CccccCCcHHHHHHH
Confidence 3444444445567899999999877 66666566677888765533 333466677776555
No 425
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=21.58 E-value=1.8e+02 Score=22.64 Aligned_cols=17 Identities=6% Similarity=-0.085 Sum_probs=13.9
Q ss_pred hCCCHHHHHHHHHHHHh
Q 017513 345 AVPQVEDIVRAAKRACY 361 (370)
Q Consensus 345 ~gl~~~~I~~~i~~~l~ 361 (370)
.+++.+.+.+++.+.++
T Consensus 77 t~~~~~~~~e~i~~~l~ 93 (94)
T PRK10310 77 SGVGIEALQNKILTILQ 93 (94)
T ss_pred cccCHHHHHHHHHHHHc
Confidence 36788999999998875
No 426
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=21.56 E-value=1.2e+02 Score=28.16 Aligned_cols=34 Identities=3% Similarity=0.050 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhcc
Q 017513 281 STINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESF 318 (370)
Q Consensus 281 ~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~ 318 (370)
+.+.+.++....++++.... . -..+++.|.+.++
T Consensus 155 ~~l~~~~~~~~t~vi~~~~~---~-~~~i~~~L~~~g~ 188 (257)
T PRK15473 155 EQLESFASHQTSMAIFLSVQ---R-IHRVAERLIAGGY 188 (257)
T ss_pred hhHHHHhcCCCeEEEECCch---h-HHHHHHHHHHcCC
Confidence 45666555555677776432 2 4667777776653
No 427
>cd06066 H2MP_NAD-link-bidir Endopeptidases that belong to the bidirectional NAD-linked hydrogenase group. This group of endopeptidases are highly specific carboxyl-terminal protease (HoxW protease) which releases a 24-amino-acid peptide from HoxH prior to progression of subunit assembly. These bidirectional hydrogenases are heteropentamers encoded by the hox (hydrogen oxidation) genes, in which complex HoxEFU shows the diaphorase activity, and HoxYH constitutes the NiFe-hydrogenase.
Probab=21.56 E-value=2.6e+02 Score=23.32 Aligned_cols=42 Identities=14% Similarity=0.289 Sum_probs=21.1
Q ss_pred HHHHHHHHHhc-CCceeEEEeccccCCCHHHHHHHHhcCCeEEEEec
Q 017513 253 SLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (370)
Q Consensus 253 al~Aa~~L~~~-Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe 298 (370)
...+++.|+++ .-++.++|.-+.-+ + +...+.+++++|++|-
T Consensus 16 G~~v~~~L~~~~~~~v~~id~g~~g~---~-l~~~l~~~d~vIivDA 58 (139)
T cd06066 16 GPAVAERIEEWLLPGVEVLAVHQLTP---E-LAEDLAGADRVIFIDA 58 (139)
T ss_pred hHHHHHHHHhhCCCCeEEEEcCCCCH---H-HHHHhcCCCEEEEEEc
Confidence 33455555443 23466677665311 1 2234456667777765
No 428
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=21.49 E-value=5.1e+02 Score=26.93 Aligned_cols=143 Identities=9% Similarity=0.103 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechh--hHHHHHHHHHHHhcc-CCeeEEEcccchH
Q 017513 43 LNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYY-GLKPVVEFMTFNF 119 (370)
Q Consensus 43 ~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GI--aE~~~v~~A~GlA~~-G~rp~~~t~~~~f 119 (370)
+-+.|.+.+.++...+ +..|.+. ..+.. ..+.|.+|+..+- +=-..+..|.|++++ +.|+++ ... +.
T Consensus 361 ~~~~l~~~l~~~~~~i-i~~D~G~--~~~~~-----~~~~~~~~~~~~~~g~mG~glpaaiGa~lA~~~r~v~-i~G-DG 430 (535)
T TIGR03394 361 IARAVNDRFARHGQMP-LAADIGD--CLFTA-----MDMDDAGLMAPGYYAGMGFGVPAGIGAQCTSGKRILT-LVG-DG 430 (535)
T ss_pred HHHHHHHHhCCCCCEE-EEEccCH--HHHHH-----HhcCCCcEECcCccchhhhHHHHHHHHHhCCCCCeEE-EEe-Ch
Confidence 5556766666554432 3335442 11111 1122667776531 222344556666666 456654 433 44
Q ss_pred HHHHHHHHHHHhhhccccCCCCcccCEEEEe-CC-CCCC----C-CC---CcchHHHHHHHccCCCcEEEeeCCHHHHHH
Q 017513 120 SMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PN-GAAA----G-VG---AQHSHCYAAWYASVPGLKVLSPYSSEDARG 189 (370)
Q Consensus 120 ~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~-G~~~----~-~G---~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~ 189 (370)
..-..-|-...+. ..++|++++. .+ +... . .. ..+..++.++-+.+ |..-..-.++.|+..
T Consensus 431 ~f~m~~~EL~Ta~--------r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~ 501 (535)
T TIGR03394 431 AFQMTGWELGNCR--------RLGIDPIVILFNNASWEMLRVFQPESAFNDLDDWRFADMAAGM-GGDGVRVRTRAELAA 501 (535)
T ss_pred HHHhHHHHHHHHH--------HcCCCcEEEEEECCccceeehhccCCCcccCCCCCHHHHHHHc-CCCceEeCCHHHHHH
Confidence 3221222233444 4678887775 33 3211 0 00 01112222333333 455567788999999
Q ss_pred HHHHHHhCCC-CEEEE
Q 017513 190 LLKAAIRDPD-PVVFL 204 (370)
Q Consensus 190 ~l~~a~~~~~-Pv~i~ 204 (370)
.++.+++.++ |.+|-
T Consensus 502 al~~a~~~~~~p~lIe 517 (535)
T TIGR03394 502 ALDKAFATRGRFQLIE 517 (535)
T ss_pred HHHHHHhcCCCeEEEE
Confidence 9999998755 66663
No 429
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=21.39 E-value=1.7e+02 Score=30.67 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=35.1
Q ss_pred cccCEEEEeCCCCCCCCCCcchHHHH--------HHHccCCCcEEEeeC---CHHHHHHHH--HHHHhCC
Q 017513 142 ISVPIVFRGPNGAAAGVGAQHSHCYA--------AWYASVPGLKVLSPY---SSEDARGLL--KAAIRDP 198 (370)
Q Consensus 142 ~~~pvv~~~~~G~~~~~G~tHs~~~~--------a~~~~iP~~~V~~P~---d~~e~~~~l--~~a~~~~ 198 (370)
-+.|+++-..+|.. |.|||-+|. +-+|+.+|+.++.=+ ++.++...+ +|+-.+.
T Consensus 175 P~~pIilq~egGra---GGHHSweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g 241 (717)
T COG4981 175 PTFPIILQWEGGRA---GGHHSWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYG 241 (717)
T ss_pred CCCceEEEEecCcc---CCccchhhcccHHHHHHHHHhcCCCEEEEecCCcCChhhcccccccchhhhcC
Confidence 67899887766654 457876552 456889999887643 566666555 4555543
No 430
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=21.33 E-value=2.8e+02 Score=23.85 Aligned_cols=46 Identities=33% Similarity=0.377 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC-eEEEEecCC
Q 017513 254 LKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEEGF 300 (370)
Q Consensus 254 l~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~-~vvvvEe~~ 300 (370)
.++++.|++.|+.+-+|+... .+++.+.+.++...++ +...+++..
T Consensus 122 ~~~~~~l~~~gi~v~~I~~~~-~~~~~~~l~~iA~~tgG~~~~~~d~~ 168 (178)
T cd01451 122 LAAARKLRARGISALVIDTEG-RPVRRGLAKDLARALGGQYVRLPDLS 168 (178)
T ss_pred HHHHHHHHhcCCcEEEEeCCC-CccCccHHHHHHHHcCCeEEEcCcCC
Confidence 677888999999998887653 3456777777777664 566666643
No 431
>PRK12483 threonine dehydratase; Reviewed
Probab=21.21 E-value=6e+02 Score=26.59 Aligned_cols=109 Identities=25% Similarity=0.267 Sum_probs=58.4
Q ss_pred EEeeCCHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHH
Q 017513 178 VLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAA 257 (370)
Q Consensus 178 V~~P~d~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa 257 (370)
|++.|.-+-...+-..|-...-|+.|..|... | .... ..+..-|++|.+ +|.....+.+.+
T Consensus 88 VV~aSaGNha~gvA~aA~~lGi~~~IvmP~~t-----p--------~~Kv----~~~r~~GAeVil--~g~~~d~a~~~A 148 (521)
T PRK12483 88 VITASAGNHAQGVALAAARLGVKAVIVMPRTT-----P--------QLKV----DGVRAHGGEVVL--HGESFPDALAHA 148 (521)
T ss_pred EEEECCCHHHHHHHHHHHHhCCCEEEEECCCC-----C--------HHHH----HHHHHCCCEEEE--ECCCHHHHHHHH
Confidence 67777777777776666666777777544210 0 0000 001112445544 366677777777
Q ss_pred HHHHh-cCCceeEEEeccccCCCHHH-----------HHHHHhc-CCeEEEEecCCCCCChHHHHHHHHHh
Q 017513 258 EILAK-EGISAEVINLRSIRPLDRST-----------INASVRK-TNRLVTVEEGFPQHGVGAEICASVIE 315 (370)
Q Consensus 258 ~~L~~-~Gi~v~Vi~~~~l~P~d~~~-----------i~~~~~~-~~~vvvvEe~~~~GGlg~~i~~~l~~ 315 (370)
.++.+ +| ..++.|||... |.+.+.. .+. |++--+ .||+-+-++..+.+
T Consensus 149 ~~la~e~g-------~~~v~pfdd~~viaGqgTig~EI~eQ~~~~~D~-VvvpvG--gGGliaGia~~~K~ 209 (521)
T PRK12483 149 LKLAEEEG-------LTFVPPFDDPDVIAGQGTVAMEILRQHPGPLDA-IFVPVG--GGGLIAGIAAYVKY 209 (521)
T ss_pred HHHHHhcC-------CeeeCCCCChHHHHHHHHHHHHHHHHhCCCCCE-EEEecC--ccHHHHHHHHHHHH
Confidence 76654 34 23567886542 2233332 333 455544 37777777777654
No 432
>PLN02275 transferase, transferring glycosyl groups
Probab=21.13 E-value=7.6e+02 Score=23.89 Aligned_cols=106 Identities=7% Similarity=-0.063 Sum_probs=58.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEecccc-CCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhh
Q 017513 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIR-PLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEE 316 (370)
Q Consensus 238 g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~-P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~ 316 (370)
+..++|++.|.......+.+ ++.|++ .++ .+- .++.+.+.+.++..+-.++.-.....-|++..+.++++.
T Consensus 261 ~i~l~ivG~G~~~~~l~~~~---~~~~l~-~v~---~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~- 332 (371)
T PLN02275 261 RLLFIITGKGPQKAMYEEKI---SRLNLR-HVA---FRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGC- 332 (371)
T ss_pred CeEEEEEeCCCCHHHHHHHH---HHcCCC-ceE---EEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHC-
Confidence 34578888887765444333 344654 222 222 356788888888887554322222223688888888864
Q ss_pred ccCCCCCCEEEEecCCCCCCCHHHHHHH----hCCCHHHHHHHHHHHH
Q 017513 317 SFGYLDAPVERIAGADVPMPYAANLERM----AVPQVEDIVRAAKRAC 360 (370)
Q Consensus 317 ~~~~l~~~~~~ig~~d~~~~~~~~l~~~----~gl~~~~I~~~i~~~l 360 (370)
+.|+..... +...+.+++. ...+++++++++.+++
T Consensus 333 -----G~PVVa~~~----gg~~eiv~~g~~G~lv~~~~~la~~i~~l~ 371 (371)
T PLN02275 333 -----GLPVCAVSY----SCIGELVKDGKNGLLFSSSSELADQLLELL 371 (371)
T ss_pred -----CCCEEEecC----CChHHHccCCCCeEEECCHHHHHHHHHHhC
Confidence 457743211 1111222211 1136888888888764
No 433
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=21.08 E-value=3.1e+02 Score=21.75 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=27.7
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCceeEE
Q 017513 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270 (370)
Q Consensus 238 g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi 270 (370)
-.++.++++|.....|.+.+..|+.-|..+..+
T Consensus 13 ~~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~ 45 (139)
T cd05013 13 ARRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLL 45 (139)
T ss_pred CCEEEEEEcCchHHHHHHHHHHHHHcCCceEEe
Confidence 357999999999999999999998888765555
No 434
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=21.03 E-value=4.3e+02 Score=21.94 Aligned_cols=46 Identities=7% Similarity=0.110 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcC-CeEEEEec
Q 017513 251 GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT-NRLVTVEE 298 (370)
Q Consensus 251 ~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~-~~vvvvEe 298 (370)
..+.++++.++++|+.+-+|.+- .+.+.+.+++.+... +....+++
T Consensus 116 ~~~~~~~~~~~~~~v~i~~i~~g--~~~~~~~l~~ia~~~~g~~~~~~~ 162 (170)
T cd01465 116 DELARLVAQKRESGITLSTLGFG--DNYNEDLMEAIADAGNGNTAYIDN 162 (170)
T ss_pred HHHHHHHHHhhcCCeEEEEEEeC--CCcCHHHHHHHHhcCCceEEEeCC
Confidence 45556666677789998888887 578888887776543 45555554
No 435
>PLN02972 Histidyl-tRNA synthetase
Probab=20.98 E-value=2.8e+02 Score=30.49 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=37.1
Q ss_pred CcEEEEEechh-HHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc--CCeEEEEec
Q 017513 239 KDVTITAFSKI-VGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK--TNRLVTVEE 298 (370)
Q Consensus 239 ~dv~Iia~G~~-~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~--~~~vvvvEe 298 (370)
.|+.|++.|.. ...+++.++.|+++||++++... .++ .+.+. .+.+ ...++++.+
T Consensus 669 ~dVlV~s~g~~~l~~alkia~~LR~aGI~aE~~~~---~kl-~kq~~-~A~k~gi~~vVIIGe 726 (763)
T PLN02972 669 TEVLVSIIGDDKLALAAELVSELWNAGIKAEYKVS---TRK-AKHLK-RAKESGIPWMVLVGE 726 (763)
T ss_pred CcEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEeCC---CCH-HHHHH-HHHHCCCCEEEEECc
Confidence 57888887754 67899999999999999995321 222 33443 4443 356777765
No 436
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=20.91 E-value=9.1e+02 Score=24.78 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=22.0
Q ss_pred CCcEEEEEechhH----HHHHHHHHHHHhcCCce
Q 017513 238 GKDVTITAFSKIV----GLSLKAAEILAKEGISA 267 (370)
Q Consensus 238 g~dv~Iia~G~~~----~~al~Aa~~L~~~Gi~v 267 (370)
...++.|+.|+.+ ....+.++-|++.|..+
T Consensus 282 ~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~f 315 (477)
T PLN02863 282 DHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHF 315 (477)
T ss_pred CCceEEEEeeceecCCHHHHHHHHHHHHhCCCcE
Confidence 4579999999985 34566677777777765
No 437
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=20.79 E-value=5.2e+02 Score=26.62 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=40.6
Q ss_pred HHHHHhcC-CceeEEEeccccCCCHHHHHHHHhcCC-eEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecC
Q 017513 257 AEILAKEG-ISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGA 331 (370)
Q Consensus 257 a~~L~~~G-i~v~Vi~~~~l~P~d~~~i~~~~~~~~-~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~ 331 (370)
+..|+++| .+|+++|.. ..+++.+.+.+.+.+.+ .+|.+--.+..-....++++.+.+.. +.-..-+|+.
T Consensus 29 Aa~L~~~G~~~V~iiD~~-~~~~~~~~~~~~l~~~~pdvVgis~~t~~~~~a~~~~~~~k~~~----P~~~iV~GG~ 100 (497)
T TIGR02026 29 GGALLDAGYHDVTFLDAM-TGPLTDEKLVERLRAHCPDLVLITAITPAIYIACETLKFARERL----PNAIIVLGGI 100 (497)
T ss_pred HHHHHhcCCcceEEeccc-ccCCCHHHHHHHHHhcCcCEEEEecCcccHHHHHHHHHHHHHHC----CCCEEEEcCC
Confidence 33588889 799999986 57888888877776543 45555332211112234444444432 2234456655
No 438
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.78 E-value=84 Score=30.62 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhcCCCeEEecC
Q 017513 41 EALNSALDEEMSADPKVFLMGE 62 (370)
Q Consensus 41 ~a~~~~L~~l~~~~~~ivvi~~ 62 (370)
..|.++|...+++||+|+++|+
T Consensus 185 ~sF~~aLraALReDPDVIlvGE 206 (353)
T COG2805 185 LSFANALRAALREDPDVILVGE 206 (353)
T ss_pred HHHHHHHHHHhhcCCCEEEEec
Confidence 5689999999999999999985
No 439
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=20.76 E-value=8.4e+02 Score=24.23 Aligned_cols=111 Identities=15% Similarity=0.127 Sum_probs=55.9
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeE-EEeccccCCCHHHHHHHHhc-CCeEEEEecCCCCCChHHHHHHHHH
Q 017513 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEV-INLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~V-i~~~~l~P~d~~~i~~~~~~-~~~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
.|.|++=+|.=.+ .+-+|...++++ +++-+ -|++ ||...-.+++.. .+++ =+--++. |.+-+.+...+.
T Consensus 54 aGceiVRvav~~~--~~a~al~~I~~~-~~iPlvADIH----Fd~~lAl~a~~~G~~~i-RINPGNi-g~~~~~v~~vv~ 124 (360)
T PRK00366 54 AGCEIVRVAVPDM--EAAAALPEIKKQ-LPVPLVADIH----FDYRLALAAAEAGADAL-RINPGNI-GKRDERVREVVE 124 (360)
T ss_pred cCCCEEEEccCCH--HHHHhHHHHHHc-CCCCEEEecC----CCHHHHHHHHHhCCCEE-EECCCCC-CchHHHHHHHHH
Confidence 4666665554322 233344444433 33332 2332 466655555554 4554 2233332 444445554443
Q ss_pred hhccCCCCCCEEEEecCCCCCCCHHHHHHHhC-CCHHHHHHHHHHHHh
Q 017513 315 EESFGYLDAPVERIAGADVPMPYAANLERMAV-PQVEDIVRAAKRACY 361 (370)
Q Consensus 315 ~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~g-l~~~~I~~~i~~~l~ 361 (370)
.-.- .+ ...|+|++.-. ....+.+.|| ++++.+++.+.+.++
T Consensus 125 ~ak~--~~-ipIRIGvN~GS--L~~~~~~~yg~~t~eamveSAl~~~~ 167 (360)
T PRK00366 125 AAKD--YG-IPIRIGVNAGS--LEKDLLEKYGEPTPEALVESALRHAK 167 (360)
T ss_pred HHHH--CC-CCEEEecCCcc--ChHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 2110 12 34689986433 3345555565 699999999887654
No 440
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=20.71 E-value=6.8e+02 Score=23.99 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=41.5
Q ss_pred CCcEEEEEechh----HHHHHHHHHHHHhcCC-ceeEEEeccc-----------cCCCHHHHHHHHhc-CCeEEEEecCC
Q 017513 238 GKDVTITAFSKI----VGLSLKAAEILAKEGI-SAEVINLRSI-----------RPLDRSTINASVRK-TNRLVTVEEGF 300 (370)
Q Consensus 238 g~dv~Iia~G~~----~~~al~Aa~~L~~~Gi-~v~Vi~~~~l-----------~P~d~~~i~~~~~~-~~~vvvvEe~~ 300 (370)
|.|+.||.+.+. .-+.+-.++.|++.|- ++.++=+..- .|+....+.+.+.. .++|+++|-|.
T Consensus 49 g~~V~ivqs~~~~n~~l~elll~~~alr~~~a~~i~~ViPY~~YaRqDr~~~~ge~isak~vA~ll~~~~d~vit~DlH~ 128 (301)
T PRK07199 49 GRTVVLVCSLDRPDEKLLPLLFAAEAARELGARRVGLVAPYLAYMRQDIAFHPGEAISQRHFARLLSGSFDRLVTVDPHL 128 (301)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccCCCCCccHHHHHHHHHhhcCeEEEEeccc
Confidence 678999988643 3344456777777776 4666633221 26666666666653 68999999985
No 441
>TIGR00140 hupD hydrogenase expression/formation protein. C at 64 and 67 are believed to be metal binding. Postulated to be involved in processing or hydrogenase. Superfamily suggests that it is a peptidase/protease.
Probab=20.59 E-value=2.5e+02 Score=23.07 Aligned_cols=39 Identities=10% Similarity=0.182 Sum_probs=20.6
Q ss_pred HHHHHHhc-C--CceeEEEeccccCCCHHHHHHHHhcCCeEEEEec
Q 017513 256 AAEILAKE-G--ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEE 298 (370)
Q Consensus 256 Aa~~L~~~-G--i~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe 298 (370)
+++.|+++ + -+++++|..+. -..+...+.+++++|+||-
T Consensus 3 v~~~L~~~~~~~~~v~vid~gt~----~~~l~~~l~~~d~viiVDA 44 (134)
T TIGR00140 3 LVEALQQRYAFPDNVTLLDGGTQ----GLYLLPLIESADRLIILDA 44 (134)
T ss_pred HHHHHHHhCCCCCCeEEEecCcc----HHHHHHHHhcCCeEEEEec
Confidence 44555433 2 24667776664 2223344456666777764
No 442
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=20.54 E-value=1.4e+02 Score=27.65 Aligned_cols=30 Identities=27% Similarity=0.253 Sum_probs=23.3
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceeEEEe
Q 017513 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (370)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~ 272 (370)
|++||+-|.. .+.||..|++.|.++.||+-
T Consensus 2 dvvIIG~G~a---Gl~aA~~l~~~g~~v~lie~ 31 (300)
T TIGR01292 2 DVIIIGAGPA---GLTAAIYAARANLKTLIIEG 31 (300)
T ss_pred cEEEECCCHH---HHHHHHHHHHCCCCEEEEec
Confidence 7889998843 33466678888999999995
No 443
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=20.52 E-value=1.5e+02 Score=27.62 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=8.3
Q ss_pred eeCCcEEEEEec
Q 017513 236 REGKDVTITAFS 247 (370)
Q Consensus 236 ~~g~dv~Iia~G 247 (370)
++|.+|.+|+.|
T Consensus 70 ~~G~~ValVSsG 81 (249)
T COG1010 70 AEGRDVALVSSG 81 (249)
T ss_pred hcCCeEEEEeCC
Confidence 456677777777
No 444
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=20.44 E-value=4.5e+02 Score=21.71 Aligned_cols=76 Identities=12% Similarity=0.072 Sum_probs=44.0
Q ss_pred cEEEEEechhHHHHHHHHHH----HHhc-CCceeEEEeccccCCCHHHHHHHHh-cCCeEEEEecCCCCC-ChHHHHHHH
Q 017513 240 DVTITAFSKIVGLSLKAAEI----LAKE-GISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEEGFPQH-GVGAEICAS 312 (370)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~----L~~~-Gi~v~Vi~~~~l~P~d~~~i~~~~~-~~~~vvvvEe~~~~G-Glg~~i~~~ 312 (370)
-++|++-||--..+.+..+. +++. ++.+.+--+-.-.|--.+.+.+..+ .+++|+++.--...| -....|-+.
T Consensus 2 ~lllvgHGSR~~~~~~~~~~la~~l~~~~~~~v~~afle~~~P~l~~~l~~l~~~G~~~ivVvPlFL~~G~Hv~~DiP~~ 81 (125)
T cd03415 2 AIIIITHGSRRNTFNEDMEEWAAYLERKLGVPVYLTYNEYAEPNWRDLLNELLSEGYGHIIIALAFLGRGNHVARDIMGE 81 (125)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHhccCCceEEEEeecCCCCHHHHHHHHHHCCCCEEEEehhhccCCcchHHHHHHH
Confidence 37899999887777655444 4433 4455444444446766677777655 457888886432222 133445555
Q ss_pred HHh
Q 017513 313 VIE 315 (370)
Q Consensus 313 l~~ 315 (370)
+.+
T Consensus 82 l~~ 84 (125)
T cd03415 82 LGV 84 (125)
T ss_pred HHh
Confidence 543
No 445
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=20.44 E-value=1.8e+02 Score=21.37 Aligned_cols=23 Identities=26% Similarity=0.279 Sum_probs=17.3
Q ss_pred chhHHHHHHHHHHHHhcCCceeEE
Q 017513 247 SKIVGLSLKAAEILAKEGISAEVI 270 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi 270 (370)
|.. ....+|.+.|+++|+.++|+
T Consensus 54 g~~-~~~~~a~~~L~~~~v~vEvl 76 (76)
T PF09383_consen 54 GDD-EEIEKAIAYLREQGVEVEVL 76 (76)
T ss_dssp S-H-HHHHHHHHHHHHTTEEEEEE
T ss_pred CCH-HHHHHHHHHHHHCCCeEEEC
Confidence 443 34667888999999999986
No 446
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=20.34 E-value=5.1e+02 Score=27.63 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=21.7
Q ss_pred HccCCCcEEEeeCCHHHHH---HHHHHHHhCCCCEEEEe
Q 017513 170 YASVPGLKVLSPYSSEDAR---GLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 170 ~~~iP~~~V~~P~d~~e~~---~~l~~a~~~~~Pv~i~~ 205 (370)
|+.+ ||.++.|.|-.|.. .+++.+-+.++|++|..
T Consensus 234 f~~~-G~~~~~~vDGhd~~~l~~al~~ak~~~~P~~i~~ 271 (617)
T TIGR00204 234 FEEL-GFNYIGPVDGHDLLELIETLKNAKKLKGPVFLHI 271 (617)
T ss_pred HHHc-CCcEEcccCCCCHHHHHHHHHHHhcCCCCEEEEE
Confidence 3334 77777676666544 44554444578999864
No 447
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=20.31 E-value=2.8e+02 Score=20.11 Aligned_cols=61 Identities=11% Similarity=0.010 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCceeEEEeccccCCC--HHHHHHHHhcCCeE-EEEecC-CCCCChHHHHHHHHHh
Q 017513 251 GLSLKAAEILAKEGISAEVINLRSIRPLD--RSTINASVRKTNRL-VTVEEG-FPQHGVGAEICASVIE 315 (370)
Q Consensus 251 ~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d--~~~i~~~~~~~~~v-vvvEe~-~~~GGlg~~i~~~l~~ 315 (370)
..+.++...|+++|+..+++++. +-+ .+.+++ +...++| ++++++ -..-.=++.|.++|.+
T Consensus 11 p~~~kv~~~L~~~gi~y~~~~v~---~~~~~~~~~~~-~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~ 75 (77)
T cd03041 11 PFCRLVREVLTELELDVILYPCP---KGSPKRDKFLE-KGGKVQVPYLVDPNTGVQMFESADIVKYLFK 75 (77)
T ss_pred chHHHHHHHHHHcCCcEEEEECC---CChHHHHHHHH-hCCCCcccEEEeCCCCeEEEcHHHHHHHHHH
Confidence 45666777788899999998873 221 223433 3333344 223321 1112225667777764
No 448
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=20.30 E-value=3.4e+02 Score=24.03 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=11.6
Q ss_pred HHHHhcCCceeEEEec-cccCCCH
Q 017513 258 EILAKEGISAEVINLR-SIRPLDR 280 (370)
Q Consensus 258 ~~L~~~Gi~v~Vi~~~-~l~P~d~ 280 (370)
+.|+++|++.=++|+- ||-|+|.
T Consensus 21 ~~L~~~Gikgvi~DlDNTLv~wd~ 44 (175)
T COG2179 21 DILKAHGIKGVILDLDNTLVPWDN 44 (175)
T ss_pred HHHHHcCCcEEEEeccCceecccC
Confidence 3455555555555553 4444443
No 449
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=20.15 E-value=1.8e+02 Score=25.56 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=22.9
Q ss_pred cEEEEEec-hhHHHHHHHHHHHHhcCCceeEEE
Q 017513 240 DVTITAFS-KIVGLSLKAAEILAKEGISAEVIN 271 (370)
Q Consensus 240 dv~Iia~G-~~~~~al~Aa~~L~~~Gi~v~Vi~ 271 (370)
+++|.-+| +.+..+.+..+.|++.|.++.||=
T Consensus 2 ~I~lgvtGs~~a~~~~~ll~~L~~~g~~V~vi~ 34 (177)
T TIGR02113 2 KILLAVTGSIAAYKAADLTSQLTKLGYDVTVLM 34 (177)
T ss_pred EEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 35666666 445667788888888888887764
No 450
>PRK13984 putative oxidoreductase; Provisional
Probab=20.08 E-value=1.2e+02 Score=31.90 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=27.7
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEe
Q 017513 236 REGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (370)
Q Consensus 236 ~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~ 272 (370)
+.+.+++||+.| ...+.|+..|++.|+++.|++-
T Consensus 281 ~~~~~v~IIGaG---~aGl~aA~~L~~~G~~v~vie~ 314 (604)
T PRK13984 281 KKNKKVAIVGSG---PAGLSAAYFLATMGYEVTVYES 314 (604)
T ss_pred cCCCeEEEECCC---HHHHHHHHHHHHCCCeEEEEec
Confidence 356789999988 4566788889999999999964
No 451
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=20.06 E-value=2.2e+02 Score=32.85 Aligned_cols=113 Identities=17% Similarity=0.125 Sum_probs=61.4
Q ss_pred CcEeechhhHHHHHHHHHHHhccC-CeeEEEccc-chHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCC---CCC
Q 017513 84 ERVLDTPITEAGFTGIGVGAAYYG-LKPVVEFMT-FNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGA---AAG 157 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~G-~rp~~~t~~-~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~---~~~ 157 (370)
.|..++-++=-+.++++.|+|... -++++.+.. ++|..-++-.|++.++ ++.++++.. .... +|+
T Consensus 461 ~~~~~~~~~MG~~g~~~~G~a~~~~~~~v~a~iGDgTf~HSG~~al~~AV~---------~~~nit~~IL~N~~tAMTGg 531 (1159)
T PRK13030 461 DRDTTGLTQMGGEGVDWIGHAPFTETKHVFQNLGDGTYFHSGSLAIRQAVA---------AGANITYKILYNDAVAMTGG 531 (1159)
T ss_pred ccccceeeccCccchhhceeccccCCCCEEEEeccchhhhcCHHHHHHHHh---------cCCCeEEEEEeCCcccccCC
Confidence 344443333334456777777762 356665554 5677788889998776 466666654 2222 222
Q ss_pred CCCcchHHHHH---HHcc--CCCcEEE--eeCC-----HH--------HHHHHHHHHH-hCCCCEEEEe
Q 017513 158 VGAQHSHCYAA---WYAS--VPGLKVL--SPYS-----SE--------DARGLLKAAI-RDPDPVVFLE 205 (370)
Q Consensus 158 ~G~tHs~~~~a---~~~~--iP~~~V~--~P~d-----~~--------e~~~~l~~a~-~~~~Pv~i~~ 205 (370)
...-...+... .++. +..+.|+ .|.+ -. +....++.++ +.+++.+|..
T Consensus 532 Qp~~g~i~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~~~~GvsViI~ 600 (1159)
T PRK13030 532 QPVDGSISVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELRETPGVTVLIY 600 (1159)
T ss_pred CCCCCCCCHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 11001122233 4443 5556666 4544 22 5566777777 5678887764
No 452
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=20.03 E-value=1.6e+02 Score=24.15 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=31.2
Q ss_pred EEEEEechhHH--HHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcC
Q 017513 241 VTITAFSKIVG--LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT 290 (370)
Q Consensus 241 v~Iia~G~~~~--~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~ 290 (370)
+++++-|.... ...++++.|+++|+.+-+|.+.. .+.+.+.+....+
T Consensus 107 iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g~---~~~~~l~~la~~~ 155 (161)
T cd01450 107 IIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVGP---ADEEELREIASCP 155 (161)
T ss_pred EEEECCCCCCCCcchHHHHHHHHHCCCEEEEEeccc---cCHHHHHHHhCCC
Confidence 55555553322 36677888988888888886544 6777777665554
No 453
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=20.02 E-value=3.3e+02 Score=26.37 Aligned_cols=28 Identities=7% Similarity=0.007 Sum_probs=19.5
Q ss_pred cCCCHHHHHHHHhcCCeEEEEecCCCCC
Q 017513 276 RPLDRSTINASVRKTNRLVTVEEGFPQH 303 (370)
Q Consensus 276 ~P~d~~~i~~~~~~~~~vvvvEe~~~~G 303 (370)
..+|.+.|.+.+++++.++++|+....|
T Consensus 151 ~~~~~~~I~~l~~~~g~~vivD~~~~~g 178 (379)
T TIGR03402 151 TIFPIEEIGEIAKERGALFHTDAVQAVG 178 (379)
T ss_pred ecccHHHHHHHHHHcCCEEEEECccccc
Confidence 3466778888888887777777755434
Done!