Query 017514
Match_columns 370
No_of_seqs 141 out of 519
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 1E-103 2E-108 780.1 37.6 356 1-368 13-385 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 3.8E-96 8E-101 721.0 31.6 322 36-369 1-334 (334)
3 PRK01683 trans-aconitate 2-met 99.5 5.4E-12 1.2E-16 119.5 21.5 251 9-369 1-257 (258)
4 PRK14103 trans-aconitate 2-met 99.5 9.6E-12 2.1E-16 117.9 21.0 225 16-352 5-232 (255)
5 TIGR02072 BioC biotin biosynth 99.2 5E-10 1.1E-14 103.5 14.9 134 15-222 6-139 (240)
6 PRK10258 biotin biosynthesis p 99.1 4E-09 8.8E-14 99.5 18.5 172 16-291 18-189 (251)
7 TIGR00740 methyltransferase, p 98.8 1.1E-07 2.4E-12 89.2 15.4 161 50-282 53-221 (239)
8 TIGR02752 MenG_heptapren 2-hep 98.8 2.8E-08 6.1E-13 92.3 10.3 173 51-289 46-219 (231)
9 PTZ00098 phosphoethanolamine N 98.8 1.1E-06 2.4E-11 84.1 20.2 195 50-349 52-246 (263)
10 PLN02336 phosphoethanolamine N 98.7 8.4E-07 1.8E-11 91.5 19.0 192 50-351 266-460 (475)
11 PLN02233 ubiquinone biosynthes 98.7 4.9E-07 1.1E-11 86.4 14.9 165 50-286 73-246 (261)
12 PRK15068 tRNA mo(5)U34 methylt 98.7 1.3E-07 2.7E-12 93.3 10.8 152 51-289 123-275 (322)
13 PLN02244 tocopherol O-methyltr 98.7 9.4E-07 2E-11 87.7 17.0 157 50-287 118-277 (340)
14 PRK11036 putative S-adenosyl-L 98.7 4E-07 8.7E-12 86.4 13.7 162 50-290 44-209 (255)
15 PRK08317 hypothetical protein; 98.6 4.3E-06 9.4E-11 76.9 19.9 221 50-370 19-241 (241)
16 COG4106 Tam Trans-aconitate me 98.6 1.3E-06 2.8E-11 80.6 15.8 220 50-369 30-256 (257)
17 PRK00216 ubiE ubiquinone/menaq 98.6 7.3E-07 1.6E-11 82.4 13.9 173 51-292 52-229 (239)
18 PF13489 Methyltransf_23: Meth 98.6 5.3E-07 1.1E-11 78.0 11.8 138 49-285 21-160 (161)
19 PLN02396 hexaprenyldihydroxybe 98.5 1.5E-06 3.2E-11 85.7 14.4 157 51-289 132-290 (322)
20 PRK15451 tRNA cmo(5)U34 methyl 98.5 2.5E-06 5.4E-11 80.7 15.4 161 50-281 56-223 (247)
21 PRK06202 hypothetical protein; 98.5 7E-06 1.5E-10 76.7 17.8 168 49-293 59-227 (232)
22 COG2226 UbiE Methylase involve 98.5 1.5E-06 3.2E-11 82.1 13.1 169 50-285 51-221 (238)
23 PF08241 Methyltransf_11: Meth 98.5 7.7E-07 1.7E-11 69.8 9.5 95 55-216 1-95 (95)
24 PRK11705 cyclopropane fatty ac 98.5 1.5E-05 3.3E-10 80.4 19.9 200 51-364 168-370 (383)
25 TIGR00452 methyltransferase, p 98.4 1.6E-06 3.5E-11 85.2 11.7 153 51-289 122-274 (314)
26 PLN02490 MPBQ/MSBQ methyltrans 98.4 4.6E-06 9.9E-11 82.8 15.0 149 50-293 113-261 (340)
27 smart00828 PKS_MT Methyltransf 98.4 7.7E-06 1.7E-10 75.6 15.5 142 53-290 2-146 (224)
28 TIGR01934 MenG_MenH_UbiE ubiqu 98.4 6.8E-06 1.5E-10 75.1 14.5 167 50-290 39-212 (223)
29 PRK11207 tellurite resistance 98.4 3.7E-06 8E-11 77.0 12.7 137 51-287 31-169 (197)
30 PF01209 Ubie_methyltran: ubiE 98.4 2.7E-07 5.8E-12 87.0 4.1 162 50-286 47-218 (233)
31 PRK12335 tellurite resistance 98.3 8.9E-06 1.9E-10 78.7 12.2 135 52-287 122-258 (287)
32 TIGR00477 tehB tellurite resis 98.2 8.4E-06 1.8E-10 74.5 9.3 137 51-287 31-168 (195)
33 TIGR02716 C20_methyl_CrtF C-20 98.2 0.00013 2.7E-09 71.1 18.0 155 49-284 148-302 (306)
34 PF02353 CMAS: Mycolic acid cy 98.1 0.00017 3.6E-09 69.6 17.7 151 51-289 63-218 (273)
35 TIGR02021 BchM-ChlM magnesium 98.1 0.00017 3.6E-09 66.7 15.2 30 260-290 179-208 (219)
36 PRK11873 arsM arsenite S-adeno 98.0 9.7E-05 2.1E-09 70.5 14.0 151 50-288 77-230 (272)
37 PF12847 Methyltransf_18: Meth 98.0 8.4E-05 1.8E-09 60.6 11.6 105 51-218 2-111 (112)
38 PRK06922 hypothetical protein; 98.0 1.9E-05 4.2E-10 83.8 9.2 114 51-217 419-536 (677)
39 PF13847 Methyltransf_31: Meth 98.0 5.9E-05 1.3E-09 65.7 10.4 104 50-220 3-112 (152)
40 TIGR02081 metW methionine bios 98.0 9.7E-05 2.1E-09 67.1 12.2 26 263-289 143-168 (194)
41 PF03848 TehB: Tellurite resis 98.0 4.2E-05 9.1E-10 70.1 9.1 119 30-220 16-135 (192)
42 TIGR03438 probable methyltrans 97.9 8E-05 1.7E-09 72.7 11.4 131 34-224 48-183 (301)
43 PRK07580 Mg-protoporphyrin IX 97.9 0.0004 8.7E-09 64.1 15.5 32 260-292 187-218 (230)
44 smart00138 MeTrc Methyltransfe 97.9 0.00018 3.8E-09 69.1 13.0 43 144-217 199-241 (264)
45 PRK00121 trmB tRNA (guanine-N( 97.9 9E-05 2E-09 68.1 10.4 158 24-251 14-175 (202)
46 PF08242 Methyltransf_12: Meth 97.9 1E-05 2.2E-10 65.1 3.5 95 55-214 1-99 (99)
47 PLN02336 phosphoethanolamine N 97.9 0.00018 3.9E-09 74.3 13.5 102 51-217 38-141 (475)
48 KOG2361 Predicted methyltransf 97.9 0.00027 5.9E-09 66.5 12.8 198 17-289 30-238 (264)
49 KOG3010 Methyltransferase [Gen 97.9 0.0003 6.4E-09 66.2 13.0 104 51-224 34-142 (261)
50 TIGR01983 UbiG ubiquinone bios 97.8 0.00088 1.9E-08 61.7 15.3 159 50-289 45-204 (224)
51 PRK05785 hypothetical protein; 97.8 0.00063 1.4E-08 63.7 13.8 74 51-163 52-125 (226)
52 COG2230 Cfa Cyclopropane fatty 97.7 0.0043 9.3E-08 60.1 19.3 71 195-289 153-224 (283)
53 TIGR00138 gidB 16S rRNA methyl 97.7 0.00028 6.1E-09 63.9 9.9 128 51-262 43-173 (181)
54 KOG1540 Ubiquinone biosynthesi 97.7 0.0004 8.8E-09 65.9 10.8 173 49-285 99-278 (296)
55 PRK11088 rrmA 23S rRNA methylt 97.7 0.00059 1.3E-08 65.4 12.1 76 50-157 85-160 (272)
56 KOG2940 Predicted methyltransf 97.6 0.00023 5E-09 66.6 8.3 93 144-287 133-226 (325)
57 PRK05134 bifunctional 3-demeth 97.6 0.00071 1.5E-08 62.9 11.2 95 145-288 111-205 (233)
58 PRK09489 rsmC 16S ribosomal RN 97.6 0.00029 6.4E-09 70.1 8.8 107 52-219 198-304 (342)
59 PF13649 Methyltransf_25: Meth 97.5 0.00024 5.2E-09 57.4 6.5 98 54-212 1-101 (101)
60 PF08003 Methyltransf_9: Prote 97.5 0.0011 2.3E-08 64.7 11.8 147 51-283 116-262 (315)
61 PRK15001 SAM-dependent 23S rib 97.5 0.00058 1.3E-08 68.8 10.2 111 52-218 230-340 (378)
62 TIGR03840 TMPT_Se_Te thiopurin 97.5 0.0069 1.5E-07 56.3 16.1 145 51-292 35-191 (213)
63 KOG1541 Predicted protein carb 97.5 0.00079 1.7E-08 62.7 9.6 137 16-219 21-161 (270)
64 TIGR03587 Pse_Me-ase pseudamin 97.5 0.002 4.4E-08 59.4 12.4 105 14-161 14-118 (204)
65 TIGR02469 CbiT precorrin-6Y C5 97.4 0.00061 1.3E-08 56.1 7.9 21 199-219 103-123 (124)
66 PLN02585 magnesium protoporphy 97.4 0.0075 1.6E-07 59.5 16.8 27 263-290 275-301 (315)
67 TIGR00091 tRNA (guanine-N(7)-) 97.4 0.0018 3.8E-08 59.0 11.6 112 51-218 17-132 (194)
68 PRK11188 rrmJ 23S rRNA methylt 97.4 0.0014 3.1E-08 60.6 11.1 109 51-221 52-168 (209)
69 TIGR00537 hemK_rel_arch HemK-r 97.4 0.0013 2.8E-08 58.9 10.2 123 51-221 20-143 (179)
70 PF05401 NodS: Nodulation prot 97.4 0.00095 2.1E-08 61.3 8.9 106 48-219 41-147 (201)
71 KOG1270 Methyltransferases [Co 97.3 0.00099 2.2E-08 63.5 9.0 77 195-287 172-248 (282)
72 PRK13255 thiopurine S-methyltr 97.3 0.016 3.4E-07 54.2 16.7 160 32-291 22-193 (218)
73 PF00891 Methyltransf_2: O-met 97.3 0.013 2.9E-07 54.8 16.0 105 49-225 99-206 (241)
74 cd02440 AdoMet_MTases S-adenos 97.3 0.0031 6.7E-08 48.6 9.9 102 53-217 1-103 (107)
75 PF05175 MTS: Methyltransferas 97.2 0.0029 6.3E-08 56.4 9.9 110 50-219 31-141 (170)
76 PRK08287 cobalt-precorrin-6Y C 97.2 0.0014 2.9E-08 59.2 7.6 34 50-98 31-64 (187)
77 PF06080 DUF938: Protein of un 97.2 0.016 3.4E-07 53.7 14.5 180 29-285 7-189 (204)
78 PRK00107 gidB 16S rRNA methylt 97.1 0.0033 7.1E-08 57.4 9.3 101 50-219 45-146 (187)
79 TIGR03533 L3_gln_methyl protei 97.1 0.0064 1.4E-07 59.0 11.7 122 51-219 122-252 (284)
80 PLN02232 ubiquinone biosynthes 97.0 0.002 4.2E-08 57.0 6.9 110 130-284 29-143 (160)
81 COG4123 Predicted O-methyltran 97.0 0.0036 7.7E-08 59.6 8.8 61 144-219 111-171 (248)
82 PRK14121 tRNA (guanine-N(7)-)- 97.0 0.0035 7.6E-08 63.4 9.1 109 52-218 124-235 (390)
83 TIGR03534 RF_mod_PrmC protein- 96.9 0.0054 1.2E-07 57.2 9.7 125 50-218 87-217 (251)
84 TIGR00080 pimt protein-L-isoas 96.9 0.008 1.7E-07 55.5 10.4 77 50-158 77-156 (215)
85 PRK13944 protein-L-isoaspartat 96.9 0.0052 1.1E-07 56.5 9.1 80 51-160 73-154 (205)
86 PRK04266 fibrillarin; Provisio 96.8 0.028 6E-07 52.8 13.5 22 200-221 158-179 (226)
87 PRK14967 putative methyltransf 96.8 0.019 4E-07 53.4 12.2 165 51-279 37-204 (223)
88 PF03141 Methyltransf_29: Puta 96.8 0.0038 8.2E-08 64.4 7.6 49 141-222 173-223 (506)
89 PRK11805 N5-glutamine S-adenos 96.7 0.02 4.4E-07 56.1 12.2 71 52-155 135-208 (307)
90 KOG3178 Hydroxyindole-O-methyl 96.7 0.036 7.8E-07 55.0 13.8 186 9-289 138-331 (342)
91 PF07021 MetW: Methionine bios 96.7 0.011 2.4E-07 54.1 9.3 103 137-293 62-172 (193)
92 PTZ00146 fibrillarin; Provisio 96.6 0.04 8.6E-07 53.8 13.1 45 18-69 107-151 (293)
93 PRK13942 protein-L-isoaspartat 96.6 0.024 5.1E-07 52.5 10.8 20 50-69 76-95 (212)
94 PRK01544 bifunctional N5-gluta 96.6 0.017 3.7E-07 60.5 10.9 125 51-218 139-269 (506)
95 PHA03411 putative methyltransf 96.5 0.018 3.9E-07 55.7 10.0 115 52-221 66-186 (279)
96 PRK00312 pcm protein-L-isoaspa 96.5 0.035 7.7E-07 50.9 11.7 20 50-69 78-97 (212)
97 COG2242 CobL Precorrin-6B meth 96.5 0.043 9.4E-07 50.0 11.5 36 34-69 16-53 (187)
98 COG2227 UbiG 2-polyprenyl-3-me 96.4 0.0076 1.7E-07 56.9 6.4 151 51-287 60-214 (243)
99 PF13659 Methyltransf_26: Meth 96.4 0.024 5.3E-07 46.3 8.7 110 52-219 2-116 (117)
100 PF05891 Methyltransf_PK: AdoM 96.3 0.013 2.7E-07 54.7 7.3 143 49-289 54-202 (218)
101 PRK14968 putative methyltransf 96.3 0.12 2.6E-06 45.7 13.4 24 196-219 126-149 (188)
102 TIGR00438 rrmJ cell division p 96.2 0.028 6.1E-07 50.7 9.1 25 195-219 123-147 (188)
103 PLN03075 nicotianamine synthas 96.2 0.063 1.4E-06 52.5 11.9 108 50-218 123-233 (296)
104 PF05148 Methyltransf_8: Hypot 96.2 0.017 3.6E-07 53.7 7.4 42 144-219 118-159 (219)
105 TIGR00536 hemK_fam HemK family 96.1 0.047 1E-06 52.8 10.6 123 52-219 116-245 (284)
106 PRK09328 N5-glutamine S-adenos 96.1 0.047 1E-06 51.8 10.4 125 50-218 108-238 (275)
107 PF03291 Pox_MCEL: mRNA cappin 96.1 0.044 9.5E-07 54.5 10.4 49 143-220 138-188 (331)
108 PRK14966 unknown domain/N5-glu 96.1 0.039 8.5E-07 56.4 10.1 121 52-218 253-381 (423)
109 TIGR00406 prmA ribosomal prote 96.0 0.021 4.6E-07 55.4 7.7 21 200-220 241-261 (288)
110 KOG2904 Predicted methyltransf 96.0 0.19 4E-06 48.6 13.5 28 197-224 264-291 (328)
111 PRK00377 cbiT cobalt-precorrin 95.9 0.054 1.2E-06 49.3 9.4 35 50-98 40-74 (198)
112 TIGR00563 rsmB ribosomal RNA s 95.9 0.097 2.1E-06 53.6 12.2 128 51-222 239-372 (426)
113 COG2890 HemK Methylase of poly 95.8 0.072 1.6E-06 51.6 10.3 125 53-219 113-239 (280)
114 COG2813 RsmC 16S RNA G1207 met 95.8 0.078 1.7E-06 51.8 10.1 107 52-219 160-267 (300)
115 KOG3045 Predicted RNA methylas 95.7 0.033 7.2E-07 53.2 7.3 25 195-219 241-265 (325)
116 PRK10901 16S rRNA methyltransf 95.7 0.079 1.7E-06 54.3 10.8 125 51-221 245-375 (427)
117 PRK14904 16S rRNA methyltransf 95.6 0.1 2.2E-06 53.8 11.1 125 51-222 251-381 (445)
118 TIGR03704 PrmC_rel_meth putati 95.5 0.17 3.7E-06 48.1 11.5 33 51-98 87-119 (251)
119 KOG4300 Predicted methyltransf 95.4 0.085 1.8E-06 49.0 8.6 157 50-292 76-236 (252)
120 PRK14903 16S rRNA methyltransf 95.2 0.1 2.2E-06 53.7 9.5 125 51-223 238-371 (431)
121 PRK00811 spermidine synthase; 94.6 0.18 3.9E-06 48.8 9.0 22 48-69 74-95 (283)
122 PF02390 Methyltransf_4: Putat 94.6 0.14 3.1E-06 46.9 7.8 113 53-218 20-133 (195)
123 PRK00517 prmA ribosomal protei 94.5 0.11 2.5E-06 49.1 7.1 18 50-67 119-136 (250)
124 PRK14902 16S rRNA methyltransf 94.5 0.39 8.6E-06 49.4 11.5 124 51-221 251-382 (444)
125 PRK01544 bifunctional N5-gluta 94.2 0.25 5.5E-06 51.8 9.7 140 23-218 323-462 (506)
126 TIGR03439 methyl_EasF probable 94.0 0.53 1.2E-05 46.6 11.0 121 49-223 75-202 (319)
127 PRK07402 precorrin-6B methylas 94.0 0.48 1E-05 42.9 9.9 23 197-219 121-143 (196)
128 PF12147 Methyltransf_20: Puta 93.8 4.4 9.5E-05 39.7 16.3 166 32-282 119-292 (311)
129 PRK14901 16S rRNA methyltransf 93.7 0.63 1.4E-05 47.8 11.1 28 194-221 360-387 (434)
130 PRK04457 spermidine synthase; 93.7 0.47 1E-05 45.4 9.6 24 199-222 158-181 (262)
131 TIGR01177 conserved hypothetic 93.1 1.1 2.4E-05 44.2 11.4 24 198-221 274-297 (329)
132 COG2518 Pcm Protein-L-isoaspar 93.0 0.56 1.2E-05 43.6 8.5 24 50-74 72-95 (209)
133 TIGR00446 nop2p NOL1/NOP2/sun 92.7 0.85 1.8E-05 43.6 9.7 30 193-222 174-203 (264)
134 KOG1331 Predicted methyltransf 92.6 0.38 8.2E-06 46.7 7.1 135 17-226 17-151 (293)
135 PRK13943 protein-L-isoaspartat 92.5 0.97 2.1E-05 44.8 10.1 19 51-69 81-99 (322)
136 PF01135 PCMT: Protein-L-isoas 92.0 0.37 7.9E-06 44.8 6.1 19 51-69 73-91 (209)
137 PLN02672 methionine S-methyltr 91.9 0.84 1.8E-05 52.0 9.9 24 198-221 258-281 (1082)
138 TIGR00417 speE spermidine synt 91.4 0.98 2.1E-05 43.3 8.5 19 199-217 167-185 (270)
139 PF05724 TPMT: Thiopurine S-me 91.0 8.4 0.00018 35.9 14.1 162 31-290 21-192 (218)
140 KOG3191 Predicted N6-DNA-methy 90.6 4.8 0.0001 36.9 11.5 143 32-222 28-172 (209)
141 KOG1499 Protein arginine N-met 90.3 0.74 1.6E-05 45.8 6.6 105 50-215 60-164 (346)
142 PF10294 Methyltransf_16: Puta 90.2 0.72 1.6E-05 41.3 6.0 114 50-222 45-160 (173)
143 PHA03412 putative methyltransf 90.1 2.1 4.6E-05 40.7 9.2 36 51-98 50-85 (241)
144 PRK03612 spermidine synthase; 89.6 2.6 5.7E-05 44.4 10.5 21 49-69 296-316 (521)
145 PLN02366 spermidine synthase 89.3 2.3 5E-05 41.8 9.2 21 48-68 89-109 (308)
146 KOG1975 mRNA cap methyltransfe 88.8 1.6 3.5E-05 43.3 7.5 60 130-220 175-239 (389)
147 PRK00274 ksgA 16S ribosomal RN 88.0 0.66 1.4E-05 44.6 4.4 20 51-70 43-62 (272)
148 PRK13256 thiopurine S-methyltr 87.6 12 0.00025 35.3 12.3 35 32-69 28-62 (226)
149 smart00650 rADc Ribosomal RNA 87.2 2.1 4.6E-05 37.7 6.9 19 51-69 14-32 (169)
150 PF01234 NNMT_PNMT_TEMT: NNMT/ 87.2 1 2.2E-05 43.2 5.1 82 147-287 157-238 (256)
151 PLN02781 Probable caffeoyl-CoA 85.1 4.2 9.1E-05 38.2 8.1 35 50-98 68-102 (234)
152 PRK01581 speE spermidine synth 84.9 6.4 0.00014 39.8 9.6 19 199-217 249-267 (374)
153 PRK10611 chemotaxis methyltran 84.4 2.5 5.3E-05 41.3 6.3 42 50-98 115-156 (287)
154 PF01739 CheR: CheR methyltran 84.3 11 0.00024 34.5 10.3 44 49-98 30-73 (196)
155 PRK15128 23S rRNA m(5)C1962 me 84.0 14 0.0003 37.7 11.8 27 193-219 314-340 (396)
156 COG1352 CheR Methylase of chem 83.8 27 0.00058 33.8 13.0 43 50-98 96-138 (268)
157 PF13679 Methyltransf_32: Meth 82.8 2 4.3E-05 37.0 4.4 38 30-69 7-44 (141)
158 COG0220 Predicted S-adenosylme 82.1 7 0.00015 36.8 8.2 146 20-218 13-164 (227)
159 PRK11783 rlmL 23S rRNA m(2)G24 81.6 8 0.00017 42.4 9.6 116 52-219 540-657 (702)
160 KOG2899 Predicted methyltransf 81.0 9.7 0.00021 36.5 8.5 23 195-217 186-208 (288)
161 PRK11727 23S rRNA mA1618 methy 79.5 5.5 0.00012 39.5 6.8 78 50-155 114-196 (321)
162 TIGR00478 tly hemolysin TlyA f 78.1 2.7 5.9E-05 39.5 4.0 20 50-69 75-94 (228)
163 KOG1271 Methyltransferases [Ge 78.0 19 0.00041 33.2 9.1 133 31-219 50-182 (227)
164 PF06325 PrmA: Ribosomal prote 77.0 3.3 7.2E-05 40.5 4.4 18 52-69 163-180 (295)
165 PF05185 PRMT5: PRMT5 arginine 76.9 4.5 9.8E-05 41.9 5.5 22 50-71 186-207 (448)
166 PF05219 DREV: DREV methyltran 76.9 12 0.00026 36.0 8.0 20 50-69 94-113 (265)
167 PRK03522 rumB 23S rRNA methylu 76.8 3.5 7.6E-05 40.4 4.5 19 51-69 174-192 (315)
168 COG2263 Predicted RNA methylas 75.7 1.7 3.7E-05 39.9 1.9 19 51-69 46-64 (198)
169 COG2264 PrmA Ribosomal protein 75.0 1.8 3.8E-05 42.5 1.9 20 50-69 162-181 (300)
170 PTZ00338 dimethyladenosine tra 74.7 7.3 0.00016 38.0 6.1 51 51-102 37-99 (294)
171 PRK04148 hypothetical protein; 72.9 12 0.00026 32.4 6.3 19 50-68 16-35 (134)
172 PRK14896 ksgA 16S ribosomal RN 72.2 6 0.00013 37.6 4.8 20 51-70 30-49 (258)
173 PF07942 N2227: N2227-like pro 72.1 35 0.00076 33.0 10.0 64 195-288 179-242 (270)
174 PRK10909 rsmD 16S rRNA m(2)G96 72.1 4 8.8E-05 37.5 3.4 18 52-69 55-72 (199)
175 PRK11933 yebU rRNA (cytosine-C 71.7 25 0.00055 36.7 9.6 128 51-222 114-246 (470)
176 PF01728 FtsJ: FtsJ-like methy 68.4 5.6 0.00012 35.2 3.5 51 36-100 9-59 (181)
177 TIGR00755 ksgA dimethyladenosi 67.6 6.7 0.00014 37.0 4.0 20 50-69 29-48 (253)
178 KOG1500 Protein arginine N-met 65.0 7.6 0.00017 38.9 3.8 153 50-266 177-343 (517)
179 KOG2798 Putative trehalase [Ca 63.8 1.6E+02 0.0035 29.4 12.6 69 195-292 273-341 (369)
180 COG4976 Predicted methyltransf 62.0 6.5 0.00014 37.4 2.6 67 196-292 203-269 (287)
181 PF02384 N6_Mtase: N-6 DNA Met 61.2 47 0.001 32.0 8.7 136 50-220 46-185 (311)
182 PF08704 GCD14: tRNA methyltra 61.1 54 0.0012 31.3 8.8 19 51-69 41-59 (247)
183 PRK13168 rumA 23S rRNA m(5)U19 60.3 11 0.00024 38.8 4.3 19 51-69 298-316 (443)
184 PF08123 DOT1: Histone methyla 59.0 17 0.00037 33.6 4.9 54 51-104 43-117 (205)
185 PF11968 DUF3321: Putative met 57.2 31 0.00068 32.3 6.3 93 50-220 51-151 (219)
186 TIGR00095 RNA methyltransferas 53.8 14 0.0003 33.5 3.4 18 52-69 51-68 (189)
187 COG1189 Predicted rRNA methyla 53.3 15 0.00032 35.0 3.4 33 35-69 66-98 (245)
188 TIGR02085 meth_trns_rumB 23S r 52.0 20 0.00043 36.1 4.5 18 52-69 235-252 (374)
189 PF09243 Rsm22: Mitochondrial 51.1 1.5E+02 0.0033 28.4 10.2 17 50-66 33-49 (274)
190 TIGR00479 rumA 23S rRNA (uraci 49.1 23 0.00049 36.2 4.4 19 51-69 293-311 (431)
191 PF07091 FmrO: Ribosomal RNA m 48.9 17 0.00036 34.9 3.1 77 33-113 89-185 (251)
192 PF06859 Bin3: Bicoid-interact 48.5 16 0.00034 30.6 2.5 24 195-218 21-44 (110)
193 KOG0451 Predicted 2-oxoglutara 48.0 37 0.0008 36.2 5.6 72 175-259 390-475 (913)
194 PF02268 TFIIA_gamma_N: Transc 46.1 21 0.00045 25.6 2.5 22 234-255 11-32 (49)
195 cd08788 CARD_NOD2_2_CARD15 Cas 45.9 22 0.00047 28.1 2.8 42 234-276 12-53 (81)
196 COG5124 Protein predicted to b 45.2 15 0.00032 33.3 2.0 35 234-268 41-75 (209)
197 PF07757 AdoMet_MTase: Predict 45.0 12 0.00027 31.3 1.4 20 50-69 58-77 (112)
198 PF09851 SHOCT: Short C-termin 43.6 18 0.0004 23.0 1.7 19 240-258 6-24 (31)
199 COG0030 KsgA Dimethyladenosine 43.0 30 0.00065 33.3 3.9 52 51-106 31-94 (259)
200 PRK11760 putative 23S rRNA C24 42.2 29 0.00062 34.9 3.7 38 32-69 188-230 (357)
201 KOG1269 SAM-dependent methyltr 41.9 59 0.0013 32.9 6.0 54 135-221 165-218 (364)
202 TIGR01444 fkbM_fam methyltrans 40.3 17 0.00037 30.5 1.6 17 53-69 1-17 (143)
203 PF03962 Mnd1: Mnd1 family; I 40.3 18 0.0004 33.0 1.9 35 235-269 29-63 (188)
204 KOG3115 Methyltransferase-like 37.5 17 0.00036 34.1 1.2 17 51-67 61-77 (249)
205 PF02167 Cytochrom_C1: Cytochr 35.7 40 0.00087 31.6 3.4 50 135-204 133-182 (219)
206 PHA00457 inhibitor of host bac 35.4 35 0.00075 25.4 2.3 30 257-287 25-58 (63)
207 PF02375 JmjN: jmjN domain; I 34.8 16 0.00034 24.1 0.4 15 262-276 1-15 (34)
208 PRK00050 16S rRNA m(4)C1402 me 34.1 81 0.0018 30.9 5.4 27 193-219 211-237 (296)
209 PRK04338 N(2),N(2)-dimethylgua 33.9 49 0.0011 33.6 4.0 63 12-98 28-90 (382)
210 TIGR02143 trmA_only tRNA (urac 33.8 52 0.0011 32.9 4.1 17 53-69 200-216 (353)
211 KOG3420 Predicted RNA methylas 32.7 29 0.00064 30.8 1.9 17 50-66 48-64 (185)
212 TIGR00730 conserved hypothetic 32.5 62 0.0013 29.2 4.0 42 233-277 136-177 (178)
213 TIGR02987 met_A_Alw26 type II 32.4 53 0.0012 34.5 4.1 42 50-98 31-72 (524)
214 PRK05031 tRNA (uracil-5-)-meth 31.3 58 0.0012 32.6 4.0 18 52-69 208-225 (362)
215 PLN02823 spermine synthase 31.2 4E+02 0.0086 26.5 9.9 22 48-69 101-122 (336)
216 PF03514 GRAS: GRAS domain fam 30.9 5.7E+02 0.012 25.7 16.6 104 49-166 109-218 (374)
217 PF14904 FAM86: Family of unkn 30.5 48 0.001 27.3 2.6 31 317-347 67-99 (100)
218 COG4627 Uncharacterized protei 27.1 23 0.0005 31.8 0.3 25 197-221 65-89 (185)
219 PF09445 Methyltransf_15: RNA 27.1 39 0.00085 30.2 1.8 17 53-69 2-18 (163)
220 PF09597 IGR: IGR protein moti 27.0 60 0.0013 23.9 2.4 27 187-213 13-39 (57)
221 PF03641 Lysine_decarbox: Poss 26.7 80 0.0017 26.8 3.6 39 234-275 95-133 (133)
222 PF10357 Kin17_mid: Domain of 26.2 74 0.0016 27.3 3.2 89 182-273 10-100 (127)
223 PRK00050 16S rRNA m(4)C1402 me 26.2 61 0.0013 31.8 3.0 31 36-69 8-38 (296)
224 PF02636 Methyltransf_28: Puta 25.1 85 0.0018 29.5 3.8 21 50-70 18-38 (252)
225 smart00545 JmjN Small domain f 25.0 47 0.001 22.9 1.4 16 261-276 2-17 (42)
226 PF01596 Methyltransf_3: O-met 24.5 41 0.00089 31.0 1.4 20 50-69 45-64 (205)
227 PF13260 DUF4051: Protein of u 23.5 1.2E+02 0.0026 21.6 3.2 27 186-212 22-48 (54)
228 COG4076 Predicted RNA methylas 23.2 87 0.0019 29.1 3.2 31 35-71 23-53 (252)
229 KOG4589 Cell division protein 23.1 1E+02 0.0023 28.6 3.7 20 50-69 69-88 (232)
230 PRK13699 putative methylase; P 22.6 2E+02 0.0043 26.9 5.6 20 198-217 52-71 (227)
231 PHA02734 coat protein; Provisi 22.3 68 0.0015 27.4 2.2 37 63-99 49-88 (149)
232 KOG3463 Transcription initiati 22.2 77 0.0017 26.4 2.4 54 235-290 13-67 (109)
233 COG1942 Uncharacterized protei 21.7 2.3E+02 0.005 21.6 4.8 41 58-98 7-48 (69)
234 COG2519 GCD14 tRNA(1-methylade 21.6 1.9E+02 0.0041 27.9 5.3 43 200-256 177-219 (256)
235 PRK02289 4-oxalocrotonate taut 20.6 1.1E+02 0.0024 22.1 2.8 36 62-98 11-47 (60)
236 KOG4068 Uncharacterized conser 20.3 1.1E+02 0.0024 27.3 3.2 45 235-279 68-116 (174)
237 PF08044 DUF1707: Domain of un 20.2 89 0.0019 22.5 2.2 41 236-276 9-50 (53)
238 KOG3433 Protein involved in me 20.1 74 0.0016 29.1 2.1 36 233-268 39-74 (203)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=1e-103 Score=780.07 Aligned_cols=356 Identities=38% Similarity=0.621 Sum_probs=324.5
Q ss_pred CcccceeeccCCCCCchhHhhhHHHHHHHHHhHHHHHHHHHhhcccCCC-CceEEEeecCCCCcchHHHHHHHHHHHHHH
Q 017514 1 MEVVQVLHMNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSP-TKVAIADLGCSSGPNTLLVASELIKVVNKI 79 (370)
Q Consensus 1 m~~~~~l~M~gg~G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~-~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~ 79 (370)
|+++++|||+||+|++||++||.+|++++..++|+|+++|++++....+ ++++|||||||+|+||+++++.||++|+++
T Consensus 13 m~~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~ 92 (386)
T PLN02668 13 MKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKR 92 (386)
T ss_pred ceeccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999998654334 789999999999999999999999999999
Q ss_pred HHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHH------HHhhCCCCCCCCceEEeecCCCcccccCCCCceeEEE
Q 017514 80 CDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKIL------RKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFH 153 (370)
Q Consensus 80 ~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~------~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~sv~~~~ 153 (370)
|.+.+.++|+|||||||||+||||+||++||.+.+.+ .+..+. ++||++|||||||+||||++||||+|
T Consensus 93 ~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~-----~~~f~~gvpGSFY~RLfP~~Slh~~~ 167 (386)
T PLN02668 93 YESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGH-----RSYFAAGVPGSFYRRLFPARSIDVFH 167 (386)
T ss_pred hhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCC-----CceEEEecCccccccccCCCceEEEE
Confidence 9877777889999999999999999999999875532 111111 46999999999999999999999999
Q ss_pred eccccccccCCCCCccC------CCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeccCCCCCC
Q 017514 154 SSYSLQWLSQVPDGLES------NKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPS 227 (370)
Q Consensus 154 S~~alhWls~~P~~~~~------nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~~~~ 227 (370)
|++||||||++|+.+.+ |||+||+++++ ++|.+||++||++||..||++||+||+|||+||++++||++.++.
T Consensus 168 Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s-~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~ 246 (386)
T PLN02668 168 SAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGAS-ESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPT 246 (386)
T ss_pred eeccceecccCchhhccCCcccccCCceEecCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcc
Confidence 99999999999998864 99999999887 789999999999999999999999999999999999999988777
Q ss_pred Cch-hhhHHHH-HHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEEEEEeecccccccCcccccc
Q 017514 228 SKE-CCYIWEL-LATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNEA 305 (370)
Q Consensus 228 ~~~-~~~~~~~-l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le~~~~~w~~~~~~~~~~D~ 305 (370)
.++ .+.+|+. +.++|+|||.||+|++||+|+||+|+|+||++|++++|+++|+|+|+++|+++..|+.+.+.. +|
T Consensus 247 ~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~~~~~~--~d- 323 (386)
T PLN02668 247 DQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPLVVNEP--DD- 323 (386)
T ss_pred cCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcccccCc--cc-
Confidence 665 5667877 999999999999999999999999999999999999999999999999999999998755431 23
Q ss_pred ccccccccchhhhhhHhhhhhHHHHhhChhHHHHHHHHHHHHHHhhhhh--cCCcEEEEEEEEEe
Q 017514 306 VDAFNDGGYNVANCMRAVAEPLLVSQFGEAIIDELFKRYREIVADRMSK--EKTKFINVTVSLTK 368 (370)
Q Consensus 306 ~~~~~~~a~~~a~~~RA~~epll~~hfg~~i~Delf~r~~~~v~~~~~~--~~~~~~~~~~~L~r 368 (370)
....++.+++++||++||+|++|||++|+|+||+||+++++++++. +++++++++++|+-
T Consensus 324 ---~~~~g~~~a~~~RA~~E~ll~~HFG~~i~D~lF~r~~~~v~~~~~~~~~~~~~~~~~~sL~~ 385 (386)
T PLN02668 324 ---AAEVGRAMANSCRSVAGVLVDAHIGEELSNELFLRVERRATSHAKELLEKLQFFHIVASLSF 385 (386)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEEEEec
Confidence 4567889999999999999999999999999999999999999998 89999999999873
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=3.8e-96 Score=721.00 Aligned_cols=322 Identities=57% Similarity=0.933 Sum_probs=273.7
Q ss_pred HHHHHHhhcc-cCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcC-CCCCcceEEeCCCCCCchHHHHHhhHHHH
Q 017514 36 TEEAMTKLFC-STSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLG-SQLPEFQVFLNDLPGNDFNTIFRSLASFQ 113 (370)
Q Consensus 36 l~~ai~~~~~-~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~-~~~p~i~v~~nDlp~NDFntLF~~l~~~~ 113 (370)
|++||++++. ...+++++|||||||+|+||+.+++.||++|+++|.+.+ +++|+|||||||||+||||+||++|+.+.
T Consensus 1 ~~~ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~ 80 (334)
T PF03492_consen 1 LEEAIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQ 80 (334)
T ss_dssp -HHHHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHH
T ss_pred ChHHHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhh
Confidence 5889998875 347899999999999999999999999999999998766 67889999999999999999999999998
Q ss_pred HHHHHhhCCCCCCCCceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccC------CCceeeecCCCCHHHHH
Q 017514 114 KILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLES------NKGNIFMASTSPPCVLT 187 (370)
Q Consensus 114 ~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~------nk~~i~~~~~s~~~v~~ 187 (370)
+++.+ . ++||++|||||||+||||++||||+||++||||||++|+.+.+ |||+||++++++++|.+
T Consensus 81 ~~~~~--~------~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ 152 (334)
T PF03492_consen 81 QSLKK--F------RNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAK 152 (334)
T ss_dssp HHHHH--T------TSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHH
T ss_pred hccCC--C------ceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHH
Confidence 88765 1 6899999999999999999999999999999999999999988 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCC
Q 017514 188 AYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPS 267 (370)
Q Consensus 188 ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s 267 (370)
||++||++||.+||++||+||+|||+|||+++||++.++...+.+.+|++|+++|+|||.||+|++||+|+||+|+|+||
T Consensus 153 ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps 232 (334)
T PF03492_consen 153 AYAKQFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPS 232 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---
T ss_pred HHHHHHHHHHHHHHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCC
Confidence 99999999999999999999999999999999999977776666789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEEEEEEeeccccccc-CccccccccccccccchhhhhhHhhhhhHHHHhhChhHHHHHHHHHHH
Q 017514 268 PAEIKSEVIKEGSFTIDHLEVSEVNWNAYQN-GFKFNEAVDAFNDGGYNVANCMRAVAEPLLVSQFGEAIIDELFKRYRE 346 (370)
Q Consensus 268 ~eE~~~~ie~~GsF~i~~le~~~~~w~~~~~-~~~~~D~~~~~~~~a~~~a~~~RA~~epll~~hfg~~i~Delf~r~~~ 346 (370)
.+||+++|+++|+|+|+++|+++.+|..... ....+| ...+|+.+++++|||+||+|++|||++|+|+||+||++
T Consensus 233 ~eEv~~~I~~~gsF~I~~le~~~~~~~~~~~~~~~~~d----~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~ 308 (334)
T PF03492_consen 233 PEEVRAIIEEEGSFEIEKLELFEQPWWSVPDDESWKED----AKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAK 308 (334)
T ss_dssp HHHHHHHHHHHTSEEEEEEEEEEEETCCTCTTT-STTT----HHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEEEEeecccccchhhhcccc----hhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 9999999999999999999999977554332 111123 67889999999999999999999999999999999999
Q ss_pred HHHhhhhhcC---CcEEEEEEEEEec
Q 017514 347 IVADRMSKEK---TKFINVTVSLTKI 369 (370)
Q Consensus 347 ~v~~~~~~~~---~~~~~~~~~L~r~ 369 (370)
+++++++.++ +++++++++|+||
T Consensus 309 ~v~~~~~~~~~~~~~~~~i~~~L~Rk 334 (334)
T PF03492_consen 309 KVAEHLEKEKSRNMKFVNIVVSLTRK 334 (334)
T ss_dssp HHHHHHHHTHTT-BEEEEEEEEEEE-
T ss_pred HHHHHHHHhhccCCCcEEEEEEEeeC
Confidence 9999998766 8899999999997
No 3
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.48 E-value=5.4e-12 Score=119.45 Aligned_cols=251 Identities=14% Similarity=0.183 Sum_probs=148.7
Q ss_pred ccCCCCCchhHhhhHHHHHHHHHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCC
Q 017514 9 MNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLP 88 (370)
Q Consensus 9 M~gg~G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p 88 (370)
|..++. ..|.+++..|.+....++. .+. .....+|+|+|||+|..+..+. +++ |
T Consensus 1 ~~~w~~-~~Y~~~~~~~~~~~~~ll~-------~~~---~~~~~~vLDiGcG~G~~~~~la--------~~~-------~ 54 (258)
T PRK01683 1 MSDWNP-SLYLKFEDERTRPARDLLA-------RVP---LENPRYVVDLGCGPGNSTELLV--------ERW-------P 54 (258)
T ss_pred CCCCCH-HHHHHHHHHhhcHHHHHHh-------hCC---CcCCCEEEEEcccCCHHHHHHH--------HHC-------C
Confidence 555665 7899999888766544332 111 1345799999999999887655 321 3
Q ss_pred cceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCc
Q 017514 89 EFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGL 168 (370)
Q Consensus 89 ~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~ 168 (370)
.-+|+..|+. +.......+... +--|..+ ++ ..+.|++++|+++|+.++||+.. +
T Consensus 55 ~~~v~gvD~s-----------~~~i~~a~~~~~------~~~~~~~---d~-~~~~~~~~fD~v~~~~~l~~~~d-~--- 109 (258)
T PRK01683 55 AARITGIDSS-----------PAMLAEARSRLP------DCQFVEA---DI-ASWQPPQALDLIFANASLQWLPD-H--- 109 (258)
T ss_pred CCEEEEEECC-----------HHHHHHHHHhCC------CCeEEEC---ch-hccCCCCCccEEEEccChhhCCC-H---
Confidence 4688889975 332222222111 1234433 55 35567889999999999999643 1
Q ss_pred cCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhc
Q 017514 169 ESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSE 248 (370)
Q Consensus 169 ~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~e 248 (370)
..+|+.-.+-|+|||.+++.+.+.... + .+. .+.++...
T Consensus 110 -----------------------------~~~l~~~~~~LkpgG~~~~~~~~~~~~-~-------~~~----~~~~~~~~ 148 (258)
T PRK01683 110 -----------------------------LELFPRLVSLLAPGGVLAVQMPDNLDE-P-------SHV----LMREVAEN 148 (258)
T ss_pred -----------------------------HHHHHHHHHhcCCCcEEEEECCCCCCC-H-------HHH----HHHHHHcc
Confidence 125667788999999999986432111 1 111 12222211
Q ss_pred CCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEEEEEeecccccccCccccccccccccccchhhhhhHhh-hhhH
Q 017514 249 GLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNEAVDAFNDGGYNVANCMRAV-AEPL 327 (370)
Q Consensus 249 G~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le~~~~~w~~~~~~~~~~D~~~~~~~~a~~~a~~~RA~-~epl 327 (370)
......-...-..+.+.++++++...+.+.| +.++..+.. +... -...+.+..|+++. +.|+
T Consensus 149 ~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~---~~~~-------------~~~~~~~~~~~~~~~~~~~ 211 (258)
T PRK01683 149 GPWEQNLPDRGARRAPLPPPHAYYDALAPAA-CRVDIWHTT---YYHP-------------MPSAQAIVEWVKGTGLRPF 211 (258)
T ss_pred CchHHHhccccccCcCCCCHHHHHHHHHhCC-Cceeeeeee---eeee-------------cCCchhhhhhhhhccHHHH
Confidence 1111110011122346789999999999999 555443332 1110 01134566677764 3666
Q ss_pred HHHhhChhHHHHHHHHHHHHHHhhhh-hcC----CcEEEEEEEEEec
Q 017514 328 LVSQFGEAIIDELFKRYREIVADRMS-KEK----TKFINVTVSLTKI 369 (370)
Q Consensus 328 l~~hfg~~i~Delf~r~~~~v~~~~~-~~~----~~~~~~~~~L~r~ 369 (370)
+ .+++++..+++.++|.+.+.+... ... ..|.-++++-+|+
T Consensus 212 ~-~~l~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (258)
T PRK01683 212 L-DPLTESEQAAFLAAYLARIAEAYPLQADGKVLLAFPRLFIVARRK 257 (258)
T ss_pred H-hhCCHHHHHHHHHHHHHHHHHHCCCCCCCcEEcccceEEEEEEec
Confidence 6 569999999999999999988753 222 3455556666554
No 4
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.46 E-value=9.6e-12 Score=117.94 Aligned_cols=225 Identities=16% Similarity=0.204 Sum_probs=137.9
Q ss_pred chhHhhhHHHHHHHHHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeC
Q 017514 16 TSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLN 95 (370)
Q Consensus 16 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~n 95 (370)
..|.+++..|.+....++..+. .....+|+|+|||+|..+..+. +++ |..+|+.-
T Consensus 5 ~~y~~~~~~~~~~~~~ll~~l~----------~~~~~~vLDlGcG~G~~~~~l~--------~~~-------p~~~v~gv 59 (255)
T PRK14103 5 DVYLAFADHRGRPFYDLLARVG----------AERARRVVDLGCGPGNLTRYLA--------RRW-------PGAVIEAL 59 (255)
T ss_pred HHHHHHHhHhhCHHHHHHHhCC----------CCCCCEEEEEcCCCCHHHHHHH--------HHC-------CCCEEEEE
Confidence 5799999999876644332221 1245799999999998776544 321 34678888
Q ss_pred CCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCcee
Q 017514 96 DLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNI 175 (370)
Q Consensus 96 Dlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i 175 (370)
|+- +.....-.+ . +-.|.. +++ ..+.|++++|+++|+.+|||+.. |.
T Consensus 60 D~s-----------~~~~~~a~~---~-----~~~~~~---~d~-~~~~~~~~fD~v~~~~~l~~~~d-~~--------- 106 (255)
T PRK14103 60 DSS-----------PEMVAAARE---R-----GVDART---GDV-RDWKPKPDTDVVVSNAALQWVPE-HA--------- 106 (255)
T ss_pred ECC-----------HHHHHHHHh---c-----CCcEEE---cCh-hhCCCCCCceEEEEehhhhhCCC-HH---------
Confidence 874 222111111 1 113433 365 46677889999999999999643 11
Q ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeccCCCCCCCchhhhHHHHHH--HHHHHHHhcCCcch
Q 017514 176 FMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLA--TALNNMVSEGLIEE 253 (370)
Q Consensus 176 ~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~--~al~~mv~eG~i~~ 253 (370)
.+|+.=++-|+|||++++++.+.... + . ......+. ..|.....
T Consensus 107 -----------------------~~l~~~~~~LkpgG~l~~~~~~~~~~-~-~---~~~~~~~~~~~~w~~~~~------ 152 (255)
T PRK14103 107 -----------------------DLLVRWVDELAPGSWIAVQVPGNFDA-P-S---HAAVRALARREPWAKLLR------ 152 (255)
T ss_pred -----------------------HHHHHHHHhCCCCcEEEEEcCCCcCC-h-h---HHHHHHHhccCchhHHhc------
Confidence 14555578899999999987653211 1 0 01111111 12322211
Q ss_pred hhhccCCcCcccCCHHHHHHHHHhcCceEEEEEEEEeecccccccCccccccccccccccchhhhhhHhh-hhhHHHHhh
Q 017514 254 EKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVNWNAYQNGFKFNEAVDAFNDGGYNVANCMRAV-AEPLLVSQF 332 (370)
Q Consensus 254 e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le~~~~~w~~~~~~~~~~D~~~~~~~~a~~~a~~~RA~-~epll~~hf 332 (370)
-..+..+....+++++...+++.| |++...+..... .. .....+..|+++. +.+++. .+
T Consensus 153 --~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~-~l 212 (255)
T PRK14103 153 --DIPFRVGAVVQTPAGYAELLTDAG-CKVDAWETTYVH--QL--------------TGEDPVLDWITGTALRPVRE-RL 212 (255)
T ss_pred --ccccccCcCCCCHHHHHHHHHhCC-CeEEEEeeeeee--eC--------------CCchhhhhhhhccchhhhhh-hC
Confidence 011234556789999999999999 987655542211 11 1123455566654 356666 59
Q ss_pred ChhHHHHHHHHHHHHHHhhh
Q 017514 333 GEAIIDELFKRYREIVADRM 352 (370)
Q Consensus 333 g~~i~Delf~r~~~~v~~~~ 352 (370)
+++..+++-+.+.+.+++.+
T Consensus 213 ~~~~~~~~~~~~~~~l~~~~ 232 (255)
T PRK14103 213 SDDSWEQFRAELIPLLREAY 232 (255)
T ss_pred CHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999998875
No 5
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.19 E-value=5e-10 Score=103.45 Aligned_cols=134 Identities=19% Similarity=0.253 Sum_probs=91.5
Q ss_pred CchhHhhhHHHHHHHHHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEe
Q 017514 15 GTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFL 94 (370)
Q Consensus 15 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~ 94 (370)
..+|.+.+..|+.+...+.+.+.... ..++.+|+|+|||+|..+..+. +. + |..+++.
T Consensus 6 ~~~y~~~~~~q~~~~~~l~~~~~~~~-------~~~~~~vLDlG~G~G~~~~~l~--------~~----~---~~~~~~~ 63 (240)
T TIGR02072 6 AKTYDRHAKIQREMAKRLLALLKEKG-------IFIPASVLDIGCGTGYLTRALL--------KR----F---PQAEFIA 63 (240)
T ss_pred hhchhHHHHHHHHHHHHHHHHhhhhc-------cCCCCeEEEECCCccHHHHHHH--------Hh----C---CCCcEEE
Confidence 36799999999988888777665431 1335789999999999877555 22 1 3467888
Q ss_pred CCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCce
Q 017514 95 NDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGN 174 (370)
Q Consensus 95 nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~ 174 (370)
.|+. +.......+.... +-.|+.+ ++....+|++++|+++++.++||+.. |
T Consensus 64 ~D~~-----------~~~~~~~~~~~~~-----~~~~~~~---d~~~~~~~~~~fD~vi~~~~l~~~~~-~--------- 114 (240)
T TIGR02072 64 LDIS-----------AGMLAQAKTKLSE-----NVQFICG---DAEKLPLEDSSFDLIVSNLALQWCDD-L--------- 114 (240)
T ss_pred EeCh-----------HHHHHHHHHhcCC-----CCeEEec---chhhCCCCCCceeEEEEhhhhhhccC-H---------
Confidence 8875 2222222221111 1234443 66566678899999999999999643 1
Q ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeccC
Q 017514 175 IFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRK 222 (370)
Q Consensus 175 i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~ 222 (370)
..+|+...+-|+|||.+++..++..
T Consensus 115 -----------------------~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 115 -----------------------SQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred -----------------------HHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 2367888999999999999876543
No 6
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.13 E-value=4e-09 Score=99.50 Aligned_cols=172 Identities=15% Similarity=0.163 Sum_probs=107.3
Q ss_pred chhHhhhHHHHHHHHHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeC
Q 017514 16 TSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLN 95 (370)
Q Consensus 16 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~n 95 (370)
.+|.+++.+|+.+...+...+. ....-+|+|+|||+|.++..+. +. ..+|+..
T Consensus 18 ~~Y~~~~~~q~~~a~~l~~~l~----------~~~~~~vLDiGcG~G~~~~~l~--------~~---------~~~v~~~ 70 (251)
T PRK10258 18 AHYEQHAELQRQSADALLAMLP----------QRKFTHVLDAGCGPGWMSRYWR--------ER---------GSQVTAL 70 (251)
T ss_pred HhHhHHHHHHHHHHHHHHHhcC----------ccCCCeEEEeeCCCCHHHHHHH--------Hc---------CCeEEEE
Confidence 4688888888887766554432 1134689999999998776442 21 2578888
Q ss_pred CCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCcee
Q 017514 96 DLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNI 175 (370)
Q Consensus 96 Dlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i 175 (370)
|+- +...+...+. .. ...|+.+ ++-.--+|++++|+++|+.++||....+
T Consensus 71 D~s-----------~~~l~~a~~~-~~-----~~~~~~~---d~~~~~~~~~~fD~V~s~~~l~~~~d~~---------- 120 (251)
T PRK10258 71 DLS-----------PPMLAQARQK-DA-----ADHYLAG---DIESLPLATATFDLAWSNLAVQWCGNLS---------- 120 (251)
T ss_pred ECC-----------HHHHHHHHhh-CC-----CCCEEEc---CcccCcCCCCcEEEEEECchhhhcCCHH----------
Confidence 875 3322222211 11 1234443 5533346788999999999999955421
Q ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhh
Q 017514 176 FMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEK 255 (370)
Q Consensus 176 ~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~ 255 (370)
.+|+.-.+-|+|||.++++.++.++. .-+.++|..+- +
T Consensus 121 -----------------------~~l~~~~~~Lk~gG~l~~~~~~~~~~-----------~el~~~~~~~~--~------ 158 (251)
T PRK10258 121 -----------------------TALRELYRVVRPGGVVAFTTLVQGSL-----------PELHQAWQAVD--E------ 158 (251)
T ss_pred -----------------------HHHHHHHHHcCCCeEEEEEeCCCCch-----------HHHHHHHHHhc--c------
Confidence 25666678999999999999876532 22445554331 1
Q ss_pred hccCCcCcccCCHHHHHHHHHhcCceEEEEEEEEee
Q 017514 256 VNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEV 291 (370)
Q Consensus 256 ~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le~~~~ 291 (370)
-....-+++.+|+...+...+ +++ ..+.+..
T Consensus 159 ---~~~~~~~~~~~~l~~~l~~~~-~~~-~~~~~~~ 189 (251)
T PRK10258 159 ---RPHANRFLPPDAIEQALNGWR-YQH-HIQPITL 189 (251)
T ss_pred ---CCccccCCCHHHHHHHHHhCC-cee-eeeEEEE
Confidence 112233578999999998766 554 3344433
No 7
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.83 E-value=1.1e-07 Score=89.17 Aligned_cols=161 Identities=20% Similarity=0.217 Sum_probs=95.4
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHh---hCCCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQ---LGSASGA 126 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~---~~~~~~~ 126 (370)
...+|+|+|||+|..+..+. +++ ..|..+++.-|+- +......++. .+...
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~--------~~~-----~~p~~~v~gvD~s-----------~~ml~~a~~~~~~~~~~~-- 106 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSAR--------RNI-----NQPNVKIIGIDNS-----------QPMVERCRQHIAAYHSEI-- 106 (239)
T ss_pred CCCEEEEecCCCCHHHHHHH--------Hhc-----CCCCCeEEEEeCC-----------HHHHHHHHHHHHhcCCCC--
Confidence 34689999999999887666 321 1245888888874 2222211111 11110
Q ss_pred CCceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 127 AGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 206 (370)
Q Consensus 127 ~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~ 206 (370)
+-.| +-+++..- |..+.|++++++++||++. .|...+|+.-.+
T Consensus 107 -~v~~---~~~d~~~~--~~~~~d~v~~~~~l~~~~~-------------------------------~~~~~~l~~i~~ 149 (239)
T TIGR00740 107 -PVEI---LCNDIRHV--EIKNASMVILNFTLQFLPP-------------------------------EDRIALLTKIYE 149 (239)
T ss_pred -CeEE---EECChhhC--CCCCCCEEeeecchhhCCH-------------------------------HHHHHHHHHHHH
Confidence 1133 33477432 3335789999999999642 223347888899
Q ss_pred hhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHh-cCCcchhhh----ccCCcCcccCCHHHHHHHHHhcCce
Q 017514 207 ELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVS-EGLIEEEKV----NCFNIPQYTPSPAEIKSEVIKEGSF 281 (370)
Q Consensus 207 EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~-eG~i~~e~~----d~f~~P~y~~s~eE~~~~ie~~GsF 281 (370)
-|+|||++++.-..+.+... ..+.+...+..+.. +|. +++++ +.+.-.....|++|+++.+++.| |
T Consensus 150 ~LkpgG~l~i~d~~~~~~~~-------~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG-F 220 (239)
T TIGR00740 150 GLNPNGVLVLSEKFRFEDTK-------INHLLIDLHHQFKRANGY-SELEISQKRTALENVMRTDSIETHKARLKNVG-F 220 (239)
T ss_pred hcCCCeEEEEeecccCCCHh-------HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC-C
Confidence 99999999998654433211 12233333333333 343 44333 22223344579999999999999 7
Q ss_pred E
Q 017514 282 T 282 (370)
Q Consensus 282 ~ 282 (370)
+
T Consensus 221 ~ 221 (239)
T TIGR00740 221 S 221 (239)
T ss_pred c
Confidence 5
No 8
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.80 E-value=2.8e-08 Score=92.32 Aligned_cols=173 Identities=12% Similarity=0.149 Sum_probs=94.7
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhh-CCCCCCCCc
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ 129 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~ 129 (370)
.-+|+|+|||+|..+..+. +.+ .|..+|+..|+. +......+... .... .+-
T Consensus 46 ~~~vLDiGcG~G~~~~~la--------~~~------~~~~~v~gvD~s-----------~~~~~~a~~~~~~~~~--~~v 98 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALA--------EAV------GPEGHVIGLDFS-----------ENMLSVGRQKVKDAGL--HNV 98 (231)
T ss_pred CCEEEEeCCCcCHHHHHHH--------HHh------CCCCEEEEEECC-----------HHHHHHHHHHHHhcCC--Cce
Confidence 4699999999999877555 321 134678888874 22221111111 1111 012
Q ss_pred eEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017514 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~ 209 (370)
.++. +++..--+|++++|++++..++||++.. ..+|+.-.+-|+
T Consensus 99 ~~~~---~d~~~~~~~~~~fD~V~~~~~l~~~~~~---------------------------------~~~l~~~~~~Lk 142 (231)
T TIGR02752 99 ELVH---GNAMELPFDDNSFDYVTIGFGLRNVPDY---------------------------------MQVLREMYRVVK 142 (231)
T ss_pred EEEE---echhcCCCCCCCccEEEEecccccCCCH---------------------------------HHHHHHHHHHcC
Confidence 3333 3554434678999999999999996431 125666678899
Q ss_pred cCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEEEEE
Q 017514 210 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVS 289 (370)
Q Consensus 210 ~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le~~ 289 (370)
|||++++.-.+.++......-....+..+-..+......+........ ..-..+++.+|+++.+++.| |++.+++.+
T Consensus 143 ~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~ 219 (231)
T TIGR02752 143 PGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ--ESTRDFPGMDELAEMFQEAG-FKDVEVKSY 219 (231)
T ss_pred cCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHH--HHHHHcCCHHHHHHHHHHcC-CCeeEEEEc
Confidence 999999876554332100000000111111112211111110000000 01235789999999999999 988777655
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.76 E-value=1.1e-06 Score=84.11 Aligned_cols=195 Identities=11% Similarity=0.052 Sum_probs=111.7
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCc
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (370)
...+|+|+|||+|..+..+. +. ...+|+..|+. +.......+...... +-
T Consensus 52 ~~~~VLDiGcG~G~~a~~la--------~~--------~~~~v~giD~s-----------~~~~~~a~~~~~~~~---~i 101 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYIN--------EK--------YGAHVHGVDIC-----------EKMVNIAKLRNSDKN---KI 101 (263)
T ss_pred CCCEEEEEcCCCChhhHHHH--------hh--------cCCEEEEEECC-----------HHHHHHHHHHcCcCC---ce
Confidence 45799999999999876554 22 12578888875 332222222111110 22
Q ss_pred eEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017514 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~ 209 (370)
.|.. +++...-+|++++|+++|..+++++ |. .|...+|+.-++-|+
T Consensus 102 ~~~~---~D~~~~~~~~~~FD~V~s~~~l~h~---~~----------------------------~d~~~~l~~i~r~Lk 147 (263)
T PTZ00098 102 EFEA---NDILKKDFPENTFDMIYSRDAILHL---SY----------------------------ADKKKLFEKCYKWLK 147 (263)
T ss_pred EEEE---CCcccCCCCCCCeEEEEEhhhHHhC---CH----------------------------HHHHHHHHHHHHHcC
Confidence 3433 4775555789999999998887663 21 234457788889999
Q ss_pred cCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEEEEE
Q 017514 210 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVS 289 (370)
Q Consensus 210 ~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le~~ 289 (370)
|||+++++-....+.... -+.+...+. .. ....++++++.+.+++.| |+....+-.
T Consensus 148 PGG~lvi~d~~~~~~~~~-------~~~~~~~~~----~~------------~~~~~~~~~~~~~l~~aG-F~~v~~~d~ 203 (263)
T PTZ00098 148 PNGILLITDYCADKIENW-------DEEFKAYIK----KR------------KYTLIPIQEYGDLIKSCN-FQNVVAKDI 203 (263)
T ss_pred CCcEEEEEEeccccccCc-------HHHHHHHHH----hc------------CCCCCCHHHHHHHHHHCC-CCeeeEEeC
Confidence 999999987655432110 111111111 10 113469999999999999 887665533
Q ss_pred eecccccccCccccccccccccccchhhhhhHhhhhhHHHHhhChhHHHHHHHHHHHHHH
Q 017514 290 EVNWNAYQNGFKFNEAVDAFNDGGYNVANCMRAVAEPLLVSQFGEAIIDELFKRYREIVA 349 (370)
Q Consensus 290 ~~~w~~~~~~~~~~D~~~~~~~~a~~~a~~~RA~~epll~~hfg~~i~Delf~r~~~~v~ 349 (370)
...|.. .+. .+...+++- +.-+...+|++..+.+-.-+...+.
T Consensus 204 ~~~~~~---------------~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (263)
T PTZ00098 204 SDYWLE---------------LLQ-VELKKLEEK-KEEFLKLYSEKEYNSLKDGWTRKIK 246 (263)
T ss_pred cHHHHH---------------HHH-HHHHHHHHh-HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 222211 111 222222222 2333445787776666666655554
No 10
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.71 E-value=8.4e-07 Score=91.48 Aligned_cols=192 Identities=15% Similarity=0.191 Sum_probs=115.7
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHh-hCCCCCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQ-LGSASGAAG 128 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~-~~~~~~~~~ 128 (370)
...+|+|+|||+|..++.+. +. ...+|+--|+. +.....-.+. .+... +
T Consensus 266 ~~~~vLDiGcG~G~~~~~la--------~~--------~~~~v~gvDiS-----------~~~l~~A~~~~~~~~~---~ 315 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMA--------EN--------FDVHVVGIDLS-----------VNMISFALERAIGRKC---S 315 (475)
T ss_pred CCCEEEEEeccCCHHHHHHH--------Hh--------cCCEEEEEECC-----------HHHHHHHHHHhhcCCC---c
Confidence 34699999999998766544 22 12578888875 2211111111 11110 2
Q ss_pred ceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017514 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (370)
Q Consensus 129 ~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL 208 (370)
-.|..+ ++....+|++++|+++|..+++|+.. |. .+|+.-++-|
T Consensus 316 v~~~~~---d~~~~~~~~~~fD~I~s~~~l~h~~d-~~--------------------------------~~l~~~~r~L 359 (475)
T PLN02336 316 VEFEVA---DCTKKTYPDNSFDVIYSRDTILHIQD-KP--------------------------------ALFRSFFKWL 359 (475)
T ss_pred eEEEEc---CcccCCCCCCCEEEEEECCcccccCC-HH--------------------------------HHHHHHHHHc
Confidence 234444 77666678899999999999999643 11 2566678899
Q ss_pred ccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEEEE
Q 017514 209 VAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEV 288 (370)
Q Consensus 209 ~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le~ 288 (370)
+|||++++....+....+. . .+...+. ..| ...++.+++...+++.| |++...+.
T Consensus 360 kpgG~l~i~~~~~~~~~~~-~-------~~~~~~~---~~g-------------~~~~~~~~~~~~l~~aG-F~~i~~~d 414 (475)
T PLN02336 360 KPGGKVLISDYCRSPGTPS-P-------EFAEYIK---QRG-------------YDLHDVQAYGQMLKDAG-FDDVIAED 414 (475)
T ss_pred CCCeEEEEEEeccCCCCCc-H-------HHHHHHH---hcC-------------CCCCCHHHHHHHHHHCC-Ceeeeeec
Confidence 9999999998876543221 1 1111111 111 24578999999999999 98875553
Q ss_pred EeecccccccCccccccccccccccchhhhhhHhhhh--hHHHHhhChhHHHHHHHHHHHHHHhh
Q 017514 289 SEVNWNAYQNGFKFNEAVDAFNDGGYNVANCMRAVAE--PLLVSQFGEAIIDELFKRYREIVADR 351 (370)
Q Consensus 289 ~~~~w~~~~~~~~~~D~~~~~~~~a~~~a~~~RA~~e--pll~~hfg~~i~Delf~r~~~~v~~~ 351 (370)
+.. .+...++.+..++.. .-+.+.+|++..+.+...+...+...
T Consensus 415 ~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 460 (475)
T PLN02336 415 RTD-------------------QFLQVLQRELDAVEKEKDEFISDFSEEDYNDIVGGWKAKLVRS 460 (475)
T ss_pred chH-------------------HHHHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHhHHHHHhhh
Confidence 321 122333333333211 12234588888888888887777654
No 11
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.68 E-value=4.9e-07 Score=86.43 Aligned_cols=165 Identities=13% Similarity=0.142 Sum_probs=93.0
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhC----CCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG----SASG 125 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~----~~~~ 125 (370)
..-+|+|+|||+|..+..+. +++ .|.-+|+--|+- +...+...++.. ...
T Consensus 73 ~~~~VLDlGcGtG~~~~~la--------~~~------~~~~~V~gvD~S-----------~~ml~~A~~r~~~~~~~~~- 126 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLS--------EKV------GSDGKVMGLDFS-----------SEQLAVAASRQELKAKSCY- 126 (261)
T ss_pred CCCEEEEECCcCCHHHHHHH--------HHh------CCCCEEEEEECC-----------HHHHHHHHHHhhhhhhccC-
Confidence 35799999999999776544 321 134578888875 333322221110 000
Q ss_pred CCCceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 126 AAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS 205 (370)
Q Consensus 126 ~~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra 205 (370)
.+-.|+.+ +...--+|++|+|++++++++||+.+ | ..+|+.-+
T Consensus 127 -~~i~~~~~---d~~~lp~~~~sfD~V~~~~~l~~~~d-~--------------------------------~~~l~ei~ 169 (261)
T PLN02233 127 -KNIEWIEG---DATDLPFDDCYFDAITMGYGLRNVVD-R--------------------------------LKAMQEMY 169 (261)
T ss_pred -CCeEEEEc---ccccCCCCCCCEeEEEEecccccCCC-H--------------------------------HHHHHHHH
Confidence 01234444 44222358899999999999999643 1 12567778
Q ss_pred HhhccCceEEEEeeccCCCCCCCchhhhHHHHH-HHHHHHHHh-cCCcchhhhccCCcC---cccCCHHHHHHHHHhcCc
Q 017514 206 EELVAEGRMVLTFLGRKSQDPSSKECCYIWELL-ATALNNMVS-EGLIEEEKVNCFNIP---QYTPSPAEIKSEVIKEGS 280 (370)
Q Consensus 206 ~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l-~~al~~mv~-eG~i~~e~~d~f~~P---~y~~s~eE~~~~ie~~Gs 280 (370)
+-|+|||++++.-++.++... . ..++... ...+.-+.. -|. .+++.. ++ -.+++.+|+.+.+++.|
T Consensus 170 rvLkpGG~l~i~d~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~--~~~y~~--l~~s~~~f~s~~el~~ll~~aG- 240 (261)
T PLN02233 170 RVLKPGSRVSILDFNKSTQPF-T---TSMQEWMIDNVVVPVATGYGL--AKEYEY--LKSSINEYLTGEELEKLALEAG- 240 (261)
T ss_pred HHcCcCcEEEEEECCCCCcHH-H---HHHHHHHHhhhhhHHHHHhCC--hHHHHH--HHHHHHhcCCHHHHHHHHHHCC-
Confidence 899999999999887664311 0 1111111 111111100 021 111100 01 12789999999999999
Q ss_pred eEEEEE
Q 017514 281 FTIDHL 286 (370)
Q Consensus 281 F~i~~l 286 (370)
|++.+.
T Consensus 241 F~~~~~ 246 (261)
T PLN02233 241 FSSAKH 246 (261)
T ss_pred CCEEEE
Confidence 876543
No 12
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.67 E-value=1.3e-07 Score=93.26 Aligned_cols=152 Identities=20% Similarity=0.250 Sum_probs=93.1
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCc-
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ- 129 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~- 129 (370)
.-+|+|+|||+|..++.+. +. | + -+|+--| |+-.+..-|+.... ..+.. .+
T Consensus 123 g~~VLDIGCG~G~~~~~la--------~~----g---~-~~V~GiD-~S~~~l~q~~a~~~-------~~~~~----~~i 174 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRML--------GA----G---A-KLVVGID-PSQLFLCQFEAVRK-------LLGND----QRA 174 (322)
T ss_pred CCEEEEeccCCcHHHHHHH--------Hc----C---C-CEEEEEc-CCHHHHHHHHHHHH-------hcCCC----CCe
Confidence 3699999999999988655 22 2 3 2477778 43333322222211 11111 12
Q ss_pred eEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017514 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~ 209 (370)
.| +++++ +.+-.++++|+++|..+|||... | ..+|+.-++-|+
T Consensus 175 ~~---~~~d~-e~lp~~~~FD~V~s~~vl~H~~d-p--------------------------------~~~L~~l~~~Lk 217 (322)
T PRK15068 175 HL---LPLGI-EQLPALKAFDTVFSMGVLYHRRS-P--------------------------------LDHLKQLKDQLV 217 (322)
T ss_pred EE---EeCCH-HHCCCcCCcCEEEECChhhccCC-H--------------------------------HHHHHHHHHhcC
Confidence 33 33455 44444789999999999998543 2 125777788999
Q ss_pred cCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEEEEE
Q 017514 210 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVS 289 (370)
Q Consensus 210 ~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le~~ 289 (370)
|||.+++..+..+..... . . ...+.+..+.-.++.||.+++...+++.| |++.+++-.
T Consensus 218 pGG~lvl~~~~i~~~~~~----~-l----------------~p~~~y~~~~~~~~lps~~~l~~~L~~aG-F~~i~~~~~ 275 (322)
T PRK15068 218 PGGELVLETLVIDGDENT----V-L----------------VPGDRYAKMRNVYFIPSVPALKNWLERAG-FKDVRIVDV 275 (322)
T ss_pred CCcEEEEEEEEecCCCcc----c-c----------------CchhHHhcCccceeCCCHHHHHHHHHHcC-CceEEEEeC
Confidence 999999987655433210 0 0 11111223333456789999999999999 987766643
No 13
>PLN02244 tocopherol O-methyltransferase
Probab=98.67 E-value=9.4e-07 Score=87.65 Aligned_cols=157 Identities=15% Similarity=0.150 Sum_probs=91.2
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHH---HhhCCCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILR---KQLGSASGA 126 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~---~~~~~~~~~ 126 (370)
..-+|+|+|||+|.++..+. +++ ..+|+--|+. +....... ...+...
T Consensus 118 ~~~~VLDiGCG~G~~~~~La--------~~~--------g~~v~gvD~s-----------~~~i~~a~~~~~~~g~~~-- 168 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLA--------RKY--------GANVKGITLS-----------PVQAARANALAAAQGLSD-- 168 (340)
T ss_pred CCCeEEEecCCCCHHHHHHH--------Hhc--------CCEEEEEECC-----------HHHHHHHHHHHHhcCCCC--
Confidence 45789999999999988766 221 1456666653 22111111 1112110
Q ss_pred CCceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 127 AGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 206 (370)
Q Consensus 127 ~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~ 206 (370)
+-.|..+ ++.+--||++++|+++|..++|++.+. ..+|+.-.+
T Consensus 169 -~v~~~~~---D~~~~~~~~~~FD~V~s~~~~~h~~d~---------------------------------~~~l~e~~r 211 (340)
T PLN02244 169 -KVSFQVA---DALNQPFEDGQFDLVWSMESGEHMPDK---------------------------------RKFVQELAR 211 (340)
T ss_pred -ceEEEEc---CcccCCCCCCCccEEEECCchhccCCH---------------------------------HHHHHHHHH
Confidence 2245444 665545789999999999999885321 125666678
Q ss_pred hhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEE
Q 017514 207 ELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHL 286 (370)
Q Consensus 207 EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~l 286 (370)
-|+|||++++......+..+.... +...-...+..+. ..+.+| ...+.+|+...+++.| |...+.
T Consensus 212 vLkpGG~lvi~~~~~~~~~~~~~~---l~~~~~~~~~~i~----------~~~~~p-~~~s~~~~~~~l~~aG-f~~v~~ 276 (340)
T PLN02244 212 VAAPGGRIIIVTWCHRDLEPGETS---LKPDEQKLLDKIC----------AAYYLP-AWCSTSDYVKLAESLG-LQDIKT 276 (340)
T ss_pred HcCCCcEEEEEEeccccccccccc---CCHHHHHHHHHHH----------hhccCC-CCCCHHHHHHHHHHCC-CCeeEe
Confidence 899999999987655433221111 0001111222221 122344 2358999999999999 877554
Q ss_pred E
Q 017514 287 E 287 (370)
Q Consensus 287 e 287 (370)
+
T Consensus 277 ~ 277 (340)
T PLN02244 277 E 277 (340)
T ss_pred e
Confidence 4
No 14
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.66 E-value=4e-07 Score=86.36 Aligned_cols=162 Identities=19% Similarity=0.295 Sum_probs=95.6
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHh---hCCCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQ---LGSASGA 126 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~---~~~~~~~ 126 (370)
...+|+|+|||+|..+..+. +. ..+|+..|+- +......++. .+...
T Consensus 44 ~~~~vLDiGcG~G~~a~~la--------~~---------g~~v~~vD~s-----------~~~l~~a~~~~~~~g~~~-- 93 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLA--------EL---------GHQVILCDLS-----------AEMIQRAKQAAEAKGVSD-- 93 (255)
T ss_pred CCCEEEEeCCCchHHHHHHH--------Hc---------CCEEEEEECC-----------HHHHHHHHHHHHhcCCcc--
Confidence 45799999999999887665 21 1567888874 3332222211 12110
Q ss_pred CCceEEeecCCCcccc-cCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 127 AGQCFFTGVPGSFYGR-LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS 205 (370)
Q Consensus 127 ~~~~f~~~vpgSFy~~-l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra 205 (370)
+-.|+.+ ++.+- -++++++|++++..+|||+.. |. .+|+.-+
T Consensus 94 -~v~~~~~---d~~~l~~~~~~~fD~V~~~~vl~~~~~-~~--------------------------------~~l~~~~ 136 (255)
T PRK11036 94 -NMQFIHC---AAQDIAQHLETPVDLILFHAVLEWVAD-PK--------------------------------SVLQTLW 136 (255)
T ss_pred -ceEEEEc---CHHHHhhhcCCCCCEEEehhHHHhhCC-HH--------------------------------HHHHHHH
Confidence 1134443 44321 146789999999999999764 21 1455557
Q ss_pred HhhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEE
Q 017514 206 EELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDH 285 (370)
Q Consensus 206 ~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~ 285 (370)
+-|+|||++++.+...... .+-.++..-|. .+..|+...+.. . -.|.+..+++++.+.+++.| |++++
T Consensus 137 ~~LkpgG~l~i~~~n~~~~--------~~~~~~~~~~~-~~~~~~~~~~~~-~-~~p~~~~~~~~l~~~l~~aG-f~~~~ 204 (255)
T PRK11036 137 SVLRPGGALSLMFYNANGL--------LMHNMVAGNFD-YVQAGMPKRKKR-T-LSPDYPLDPEQVYQWLEEAG-WQIMG 204 (255)
T ss_pred HHcCCCeEEEEEEECccHH--------HHHHHHccChH-HHHhcCcccccc-C-CCCCCCCCHHHHHHHHHHCC-CeEee
Confidence 7899999999887653211 01111111111 122333222111 1 23667789999999999999 99877
Q ss_pred EEEEe
Q 017514 286 LEVSE 290 (370)
Q Consensus 286 le~~~ 290 (370)
..-+.
T Consensus 205 ~~gi~ 209 (255)
T PRK11036 205 KTGVR 209 (255)
T ss_pred eeeEE
Confidence 66554
No 15
>PRK08317 hypothetical protein; Provisional
Probab=98.65 E-value=4.3e-06 Score=76.87 Aligned_cols=221 Identities=17% Similarity=0.175 Sum_probs=117.6
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHh-hCCCCCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQ-LGSASGAAG 128 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~-~~~~~~~~~ 128 (370)
...+|+|+|||+|..+..+. +.+ + |..+++.-|+. +.......+. ..... .
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a--------~~~---~---~~~~v~~~d~~-----------~~~~~~a~~~~~~~~~---~ 70 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELA--------RRV---G---PEGRVVGIDRS-----------EAMLALAKERAAGLGP---N 70 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHH--------Hhc---C---CCcEEEEEeCC-----------HHHHHHHHHHhhCCCC---c
Confidence 45799999999998777555 221 1 34678888874 2211111111 01110 2
Q ss_pred ceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017514 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (370)
Q Consensus 129 ~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL 208 (370)
-.|..+ ++...-++++++|++++..++||+.+ | ..+|+.-.+-|
T Consensus 71 ~~~~~~---d~~~~~~~~~~~D~v~~~~~~~~~~~-~--------------------------------~~~l~~~~~~L 114 (241)
T PRK08317 71 VEFVRG---DADGLPFPDGSFDAVRSDRVLQHLED-P--------------------------------ARALAEIARVL 114 (241)
T ss_pred eEEEec---ccccCCCCCCCceEEEEechhhccCC-H--------------------------------HHHHHHHHHHh
Confidence 234433 54444467889999999999999754 2 12566778899
Q ss_pred ccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEEEE
Q 017514 209 VAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEV 288 (370)
Q Consensus 209 ~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le~ 288 (370)
+|||.+++....-+...... .....+..+.+.|.. .+.-| .+..++...+++.| |+..+++.
T Consensus 115 ~~gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~---~~~~~~~~~l~~aG-f~~~~~~~ 176 (241)
T PRK08317 115 RPGGRVVVLDTDWDTLVWHS-GDRALMRKILNFWSD-------------HFADP---WLGRRLPGLFREAG-LTDIEVEP 176 (241)
T ss_pred cCCcEEEEEecCCCceeecC-CChHHHHHHHHHHHh-------------cCCCC---cHHHHHHHHHHHcC-CCceeEEE
Confidence 99999998865322111000 011122222233321 11111 24568999999999 98877777
Q ss_pred EeecccccccCccccccccccccccchhhhhhHhhhhhHHHHhhChhHHHHHHHHHHHHHHhhhhhcCC-cEEEEEEEEE
Q 017514 289 SEVNWNAYQNGFKFNEAVDAFNDGGYNVANCMRAVAEPLLVSQFGEAIIDELFKRYREIVADRMSKEKT-KFINVTVSLT 367 (370)
Q Consensus 289 ~~~~w~~~~~~~~~~D~~~~~~~~a~~~a~~~RA~~epll~~hfg~~i~Delf~r~~~~v~~~~~~~~~-~~~~~~~~L~ 367 (370)
....+..... ......+....+.+.+ ..-..++-+++++..+++... .... -++.+++...
T Consensus 177 ~~~~~~~~~~-----------~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~ 238 (241)
T PRK08317 177 YTLIETDLKE-----------ADKGFGLIRAARRAVE---AGGISADEADAWLADLAQLAR----AGEFFFSVTGFLVVG 238 (241)
T ss_pred EEEeccCcch-----------hhHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHHh----cCCEEEEEEEEEEEE
Confidence 6544322111 1112233333333322 122234455666665555432 2222 2367777777
Q ss_pred ecC
Q 017514 368 KIG 370 (370)
Q Consensus 368 r~~ 370 (370)
||+
T Consensus 239 ~kp 241 (241)
T PRK08317 239 RKP 241 (241)
T ss_pred eCC
Confidence 775
No 16
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.64 E-value=1.3e-06 Score=80.64 Aligned_cols=220 Identities=18% Similarity=0.297 Sum_probs=132.0
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCc
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (370)
.+-+|+|+|||.|..|-++. +++ |.-++.--|-. +.+..+-... .. .-
T Consensus 30 ~~~~v~DLGCGpGnsTelL~--------~Rw-------P~A~i~GiDsS-----------~~Mla~Aa~r-lp-----~~ 77 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLA--------RRW-------PDAVITGIDSS-----------PAMLAKAAQR-LP-----DA 77 (257)
T ss_pred ccceeeecCCCCCHHHHHHH--------HhC-------CCCeEeeccCC-----------HHHHHHHHHh-CC-----CC
Confidence 57899999999999998887 665 56777776754 5544433222 11 12
Q ss_pred eEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017514 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~ 209 (370)
.|.-| +- ...-|+...|++||+.+||||.+=|. .|..=-.+|.
T Consensus 78 ~f~~a---Dl-~~w~p~~~~dllfaNAvlqWlpdH~~---------------------------------ll~rL~~~L~ 120 (257)
T COG4106 78 TFEEA---DL-RTWKPEQPTDLLFANAVLQWLPDHPE---------------------------------LLPRLVSQLA 120 (257)
T ss_pred ceecc---cH-hhcCCCCccchhhhhhhhhhccccHH---------------------------------HHHHHHHhhC
Confidence 44333 33 45679999999999999999544332 2334457899
Q ss_pred cCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCc-CcccCCHHHHHHHHHhcCceEEEEEEE
Q 017514 210 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNI-PQYTPSPAEIKSEVIKEGSFTIDHLEV 288 (370)
Q Consensus 210 ~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~-P~y~~s~eE~~~~ie~~GsF~i~~le~ 288 (370)
|||.|.+.+++--++ | -+.++. +.++++=- +.++..+.. =---+|+.-+-.++...+ =+|+--++
T Consensus 121 Pgg~LAVQmPdN~de-p-------sH~~mr----~~A~~~p~-~~~l~~~~~~r~~v~s~a~Yy~lLa~~~-~rvDiW~T 186 (257)
T COG4106 121 PGGVLAVQMPDNLDE-P-------SHRLMR----ETADEAPF-AQELGGRGLTRAPLPSPAAYYELLAPLA-CRVDIWHT 186 (257)
T ss_pred CCceEEEECCCccCc-h-------hHHHHH----HHHhcCch-hhhhCccccccCCCCCHHHHHHHhCccc-ceeeeeee
Confidence 999999999864432 1 122222 22222211 111222111 111346777777776655 23322222
Q ss_pred EeecccccccCccccccccccccccchhhhhhHhhhh-hHHHHhhChhHHHHHHHHHHHHHHhhhhh-cCC----cEEEE
Q 017514 289 SEVNWNAYQNGFKFNEAVDAFNDGGYNVANCMRAVAE-PLLVSQFGEAIIDELFKRYREIVADRMSK-EKT----KFINV 362 (370)
Q Consensus 289 ~~~~w~~~~~~~~~~D~~~~~~~~a~~~a~~~RA~~e-pll~~hfg~~i~Delf~r~~~~v~~~~~~-~~~----~~~~~ 362 (370)
. + ++. -..+..+..|+++..- |.|.. ++++-...+.++|..++.+.+-. ... .|.-+
T Consensus 187 ~---Y--~h~-----------l~~a~aIvdWvkgTgLrP~L~~-L~e~~~~~FL~~Y~~~l~~aYP~~~dGr~ll~FpRl 249 (257)
T COG4106 187 T---Y--YHQ-----------LPGADAIVDWVKGTGLRPYLDR-LDEEERQRFLDRYLALLAEAYPPRADGRVLLAFPRL 249 (257)
T ss_pred e---c--ccc-----------CCCccchhhheeccccceeccc-cCHHHHHHHHHHHHHHHHHhCCCccCCcEEeecceE
Confidence 2 1 111 1235677888876544 77776 89999999999999999987643 222 35566
Q ss_pred EEEEEec
Q 017514 363 TVSLTKI 369 (370)
Q Consensus 363 ~~~L~r~ 369 (370)
+++-+|+
T Consensus 250 FiVA~~~ 256 (257)
T COG4106 250 FIVATRG 256 (257)
T ss_pred EEEEecC
Confidence 6666664
No 17
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.62 E-value=7.3e-07 Score=82.42 Aligned_cols=173 Identities=16% Similarity=0.208 Sum_probs=96.2
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCC-CCCCCCc
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGS-ASGAAGQ 129 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~-~~~~~~~ 129 (370)
..+|+|+|||+|..+..+. +.+ ++..+++..|+. +.......+.... .. ..+-
T Consensus 52 ~~~vldiG~G~G~~~~~l~--------~~~------~~~~~v~~~D~s-----------~~~~~~a~~~~~~~~~-~~~~ 105 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALA--------KAV------GKTGEVVGLDFS-----------EGMLAVGREKLRDLGL-SGNV 105 (239)
T ss_pred CCeEEEeCCCCCHHHHHHH--------HHc------CCCCeEEEEeCC-----------HHHHHHHHHhhccccc-ccCe
Confidence 4799999999999887665 321 124788899985 2221111111110 00 0012
Q ss_pred eEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017514 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~ 209 (370)
.|.. +++.+..++++++|++++++++|++.+.+ .+|+...+-|+
T Consensus 106 ~~~~---~d~~~~~~~~~~~D~I~~~~~l~~~~~~~---------------------------------~~l~~~~~~L~ 149 (239)
T PRK00216 106 EFVQ---GDAEALPFPDNSFDAVTIAFGLRNVPDID---------------------------------KALREMYRVLK 149 (239)
T ss_pred EEEe---cccccCCCCCCCccEEEEecccccCCCHH---------------------------------HHHHHHHHhcc
Confidence 3333 36655556788999999999999865422 25677788899
Q ss_pred cCceEEEEeeccCCCCCCCchhhhHHHHHHH-H---HHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEE
Q 017514 210 AEGRMVLTFLGRKSQDPSSKECCYIWELLAT-A---LNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDH 285 (370)
Q Consensus 210 ~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~-a---l~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~ 285 (370)
|||++++.-...+.... ....++.... . ...+........+.+. +.--.+++.+|+...+++.| |++.+
T Consensus 150 ~gG~li~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aG-f~~~~ 222 (239)
T PRK00216 150 PGGRLVILEFSKPTNPP----LKKAYDFYLFKVLPLIGKLISKNAEAYSYLA--ESIRAFPDQEELAAMLEEAG-FERVR 222 (239)
T ss_pred CCcEEEEEEecCCCchH----HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHH--HHHHhCCCHHHHHHHHHhCC-Cceee
Confidence 99999887665443211 0111111100 0 1111111100000000 00023579999999999999 98877
Q ss_pred EEEEeec
Q 017514 286 LEVSEVN 292 (370)
Q Consensus 286 le~~~~~ 292 (370)
...+...
T Consensus 223 ~~~~~~~ 229 (239)
T PRK00216 223 YRNLTGG 229 (239)
T ss_pred eeeeecC
Confidence 7765433
No 18
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.61 E-value=5.3e-07 Score=78.03 Aligned_cols=138 Identities=23% Similarity=0.253 Sum_probs=88.2
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCC
Q 017514 49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG 128 (370)
Q Consensus 49 ~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~ 128 (370)
+...+|+|+|||.|.++..+. +. + .++...|.- +..... . .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~--------~~--------~-~~~~g~D~~-----------~~~~~~------~-----~ 61 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALA--------KR--------G-FEVTGVDIS-----------PQMIEK------R-----N 61 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHH--------HT--------T-SEEEEEESS-----------HHHHHH------T-----T
T ss_pred CCCCEEEEEcCCCCHHHHHHH--------Hh--------C-CEEEEEECC-----------HHHHhh------h-----h
Confidence 456899999999997755443 22 2 488888874 322111 0 0
Q ss_pred ceEEeecCCCcc--cccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 129 QCFFTGVPGSFY--GRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 206 (370)
Q Consensus 129 ~~f~~~vpgSFy--~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~ 206 (370)
..+. .|. ...+|++++|+++|+.+|||+.. | ..+|+.-.+
T Consensus 62 ~~~~-----~~~~~~~~~~~~~fD~i~~~~~l~~~~d-~--------------------------------~~~l~~l~~ 103 (161)
T PF13489_consen 62 VVFD-----NFDAQDPPFPDGSFDLIICNDVLEHLPD-P--------------------------------EEFLKELSR 103 (161)
T ss_dssp SEEE-----EEECHTHHCHSSSEEEEEEESSGGGSSH-H--------------------------------HHHHHHHHH
T ss_pred hhhh-----hhhhhhhhccccchhhHhhHHHHhhccc-H--------------------------------HHHHHHHHH
Confidence 1111 121 44568899999999999999764 2 236778889
Q ss_pred hhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEE
Q 017514 207 ELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDH 285 (370)
Q Consensus 207 EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~ 285 (370)
=|+|||++++..+.+... ....+..+ ...... . --..+.+.++++..+++.| |+|.+
T Consensus 104 ~LkpgG~l~~~~~~~~~~-------------~~~~~~~~---~~~~~~---~--~~~~~~~~~~~~~ll~~~G-~~iv~ 160 (161)
T PF13489_consen 104 LLKPGGYLVISDPNRDDP-------------SPRSFLKW---RYDRPY---G--GHVHFFSPDELRQLLEQAG-FEIVE 160 (161)
T ss_dssp CEEEEEEEEEEEEBTTSH-------------HHHHHHHC---CGTCHH---T--TTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred hcCCCCEEEEEEcCCcch-------------hhhHHHhc---CCcCcc---C--ceeccCCHHHHHHHHHHCC-CEEEE
Confidence 999999999999987531 11111111 110110 0 1126669999999999999 88754
No 19
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.55 E-value=1.5e-06 Score=85.70 Aligned_cols=157 Identities=14% Similarity=0.090 Sum_probs=91.8
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCce
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (370)
..+|+|+|||.|..+..+. + +..+|+.-|.- +...+.............+-.
T Consensus 132 g~~ILDIGCG~G~~s~~La--------~---------~g~~V~GID~s-----------~~~i~~Ar~~~~~~~~~~~i~ 183 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLA--------R---------MGATVTGVDAV-----------DKNVKIARLHADMDPVTSTIE 183 (322)
T ss_pred CCEEEEeeCCCCHHHHHHH--------H---------cCCEEEEEeCC-----------HHHHHHHHHHHHhcCccccee
Confidence 4699999999999876444 2 12577777875 222221111111000000123
Q ss_pred EEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017514 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 210 (370)
Q Consensus 131 f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~ 210 (370)
|..+ ++.+--++++++|++++..+|||+.+.+ .||+.-++-|+|
T Consensus 184 ~~~~---dae~l~~~~~~FD~Vi~~~vLeHv~d~~---------------------------------~~L~~l~r~LkP 227 (322)
T PLN02396 184 YLCT---TAEKLADEGRKFDAVLSLEVIEHVANPA---------------------------------EFCKSLSALTIP 227 (322)
T ss_pred EEec---CHHHhhhccCCCCEEEEhhHHHhcCCHH---------------------------------HHHHHHHHHcCC
Confidence 4333 5532224678999999999999966521 277777888999
Q ss_pred CceEEEEeeccCCCCCCCchhhhHHHHH--HHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEEEE
Q 017514 211 EGRMVLTFLGRKSQDPSSKECCYIWELL--ATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEV 288 (370)
Q Consensus 211 GG~lvl~~~g~~~~~~~~~~~~~~~~~l--~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le~ 288 (370)
||++++..+.+... ..+..+ ..-+...+..| ......+.+++|+...+++.| |++..+.-
T Consensus 228 GG~liist~nr~~~--------~~~~~i~~~eyi~~~lp~g---------th~~~~f~tp~eL~~lL~~aG-f~i~~~~G 289 (322)
T PLN02396 228 NGATVLSTINRTMR--------AYASTIVGAEYILRWLPKG---------THQWSSFVTPEELSMILQRAS-VDVKEMAG 289 (322)
T ss_pred CcEEEEEECCcCHH--------HHHHhhhhHHHHHhcCCCC---------CcCccCCCCHHHHHHHHHHcC-CeEEEEee
Confidence 99999998754311 011111 11111111122 011224789999999999999 88877764
Q ss_pred E
Q 017514 289 S 289 (370)
Q Consensus 289 ~ 289 (370)
+
T Consensus 290 ~ 290 (322)
T PLN02396 290 F 290 (322)
T ss_pred e
Confidence 4
No 20
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.54 E-value=2.5e-06 Score=80.72 Aligned_cols=161 Identities=19% Similarity=0.218 Sum_probs=95.0
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhh---CCCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL---GSASGA 126 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~---~~~~~~ 126 (370)
..-+|+|+|||+|.+++.+. +.. ..|..+++.-|+- +...+.-++.. +...
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~--------~~~-----~~~~~~v~gvD~S-----------~~ml~~A~~~~~~~~~~~-- 109 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVR--------RNI-----HHDNCKIIAIDNS-----------PAMIERCRRHIDAYKAPT-- 109 (247)
T ss_pred CCCEEEEEcccCCHHHHHHH--------Hhc-----CCCCCeEEEEeCC-----------HHHHHHHHHHHHhcCCCC--
Confidence 45789999999999877655 211 1245788888874 44333222221 1110
Q ss_pred CCceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 127 AGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 206 (370)
Q Consensus 127 ~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~ 206 (370)
+-.| +.+++.+ + |....|+++++.++||++. + +...+|+.-++
T Consensus 110 -~v~~---~~~d~~~-~-~~~~~D~vv~~~~l~~l~~-~------------------------------~~~~~l~~i~~ 152 (247)
T PRK15451 110 -PVDV---IEGDIRD-I-AIENASMVVLNFTLQFLEP-S------------------------------ERQALLDKIYQ 152 (247)
T ss_pred -CeEE---EeCChhh-C-CCCCCCEEehhhHHHhCCH-H------------------------------HHHHHHHHHHH
Confidence 1133 3346633 2 3345899999999999753 1 12236777788
Q ss_pred hhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccC----CcCcccCCHHHHHHHHHhcCce
Q 017514 207 ELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCF----NIPQYTPSPAEIKSEVIKEGSF 281 (370)
Q Consensus 207 EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f----~~P~y~~s~eE~~~~ie~~GsF 281 (370)
-|+|||.+++.-.-..+... ..+.+...|.++....=.+++++..+ .--...-|+++..+.+++.| |
T Consensus 153 ~LkpGG~l~l~e~~~~~~~~-------~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aG-F 223 (247)
T PRK15451 153 GLNPGGALVLSEKFSFEDAK-------VGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAG-F 223 (247)
T ss_pred hcCCCCEEEEEEecCCCcch-------hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcC-c
Confidence 99999999997533322211 12334445555544444555555331 11122258999999999999 6
No 21
>PRK06202 hypothetical protein; Provisional
Probab=98.53 E-value=7e-06 Score=76.66 Aligned_cols=168 Identities=14% Similarity=0.161 Sum_probs=89.9
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCC
Q 017514 49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG 128 (370)
Q Consensus 49 ~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~ 128 (370)
++..+|+|+|||+|.++..+. +..++ ..|..+|+..|+- +.....-.+..... +
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~----~~~~~-------~g~~~~v~gvD~s-----------~~~l~~a~~~~~~~----~ 112 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLA----RWARR-------DGLRLEVTAIDPD-----------PRAVAFARANPRRP----G 112 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHH----HHHHh-------CCCCcEEEEEcCC-----------HHHHHHHHhccccC----C
Confidence 456899999999999877554 11211 1134789999985 33332222211110 1
Q ss_pred ceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017514 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (370)
Q Consensus 129 ~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL 208 (370)
--+..+....+ -++++++|+++|+.+|||+.. | ++..+|+.-++-+
T Consensus 113 ~~~~~~~~~~l---~~~~~~fD~V~~~~~lhh~~d-~------------------------------~~~~~l~~~~r~~ 158 (232)
T PRK06202 113 VTFRQAVSDEL---VAEGERFDVVTSNHFLHHLDD-A------------------------------EVVRLLADSAALA 158 (232)
T ss_pred CeEEEEecccc---cccCCCccEEEECCeeecCCh-H------------------------------HHHHHHHHHHHhc
Confidence 12333322222 126789999999999999754 1 1222444444444
Q ss_pred ccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcC-CcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEEE
Q 017514 209 VAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEG-LIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLE 287 (370)
Q Consensus 209 ~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG-~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le 287 (370)
+ |.+++.-+.++.. .+.... ........| .+..+. ...-.-+++.+|+.+.+++ | |++.+.-
T Consensus 159 ~--~~~~i~dl~~~~~---------~~~~~~-~~~~~~~~~~~~~~d~---~~s~~~~~~~~el~~ll~~-G-f~~~~~~ 221 (232)
T PRK06202 159 R--RLVLHNDLIRSRL---------AYALFW-AGTRLLSRSSFVHTDG---LLSVRRSYTPAELAALAPQ-G-WRVERQW 221 (232)
T ss_pred C--eeEEEeccccCHH---------HHHHHH-HHHHHhccCceeeccc---hHHHHhhcCHHHHHHHhhC-C-CeEEecc
Confidence 4 5555555555421 111111 111111112 222222 2222347899999999998 7 9988776
Q ss_pred EEeecc
Q 017514 288 VSEVNW 293 (370)
Q Consensus 288 ~~~~~w 293 (370)
.+...|
T Consensus 222 ~~~~~~ 227 (232)
T PRK06202 222 PFRYLL 227 (232)
T ss_pred ceeeEE
Confidence 665443
No 22
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.52 E-value=1.5e-06 Score=82.06 Aligned_cols=169 Identities=22% Similarity=0.315 Sum_probs=103.6
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCc
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (370)
+..+|+|+|||+|--++.+. +.. | .-+|+.-|.. +.+..--+++... .+...-
T Consensus 51 ~g~~vLDva~GTGd~a~~~~--------k~~---g----~g~v~~~D~s-----------~~ML~~a~~k~~~-~~~~~i 103 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLA--------KSV---G----TGEVVGLDIS-----------ESMLEVAREKLKK-KGVQNV 103 (238)
T ss_pred CCCEEEEecCCccHHHHHHH--------Hhc---C----CceEEEEECC-----------HHHHHHHHHHhhc-cCccce
Confidence 46999999999999888776 432 1 4788888875 3332222222111 000012
Q ss_pred eEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017514 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~ 209 (370)
.|+.| +.-+=-||++|+|++.+++.||++.+.+. .|+--++=|+
T Consensus 104 ~fv~~---dAe~LPf~D~sFD~vt~~fglrnv~d~~~---------------------------------aL~E~~RVlK 147 (238)
T COG2226 104 EFVVG---DAENLPFPDNSFDAVTISFGLRNVTDIDK---------------------------------ALKEMYRVLK 147 (238)
T ss_pred EEEEe---chhhCCCCCCccCEEEeeehhhcCCCHHH---------------------------------HHHHHHHhhc
Confidence 45665 77555579999999999999999777543 3556678999
Q ss_pred cCceEEEEeeccCCCCCCCchhh-hHHHHHHHHHHHHHhcCCcchhhhc-cCCcCcccCCHHHHHHHHHhcCceEEEE
Q 017514 210 AEGRMVLTFLGRKSQDPSSKECC-YIWELLATALNNMVSEGLIEEEKVN-CFNIPQYTPSPAEIKSEVIKEGSFTIDH 285 (370)
Q Consensus 210 ~GG~lvl~~~g~~~~~~~~~~~~-~~~~~l~~al~~mv~eG~i~~e~~d-~f~~P~y~~s~eE~~~~ie~~GsF~i~~ 285 (370)
|||++++.=++.++..+...... ..+..+--.+-.++.++ .+++. -....--+|+.+++...+++.| |+...
T Consensus 148 pgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~---~~~y~yL~eSi~~~p~~~~l~~~~~~~g-f~~i~ 221 (238)
T COG2226 148 PGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKD---AEAYEYLAESIRRFPDQEELKQMIEKAG-FEEVR 221 (238)
T ss_pred CCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecC---hHHHHHHHHHHHhCCCHHHHHHHHHhcC-ceEEe
Confidence 99999999888876543221111 11111111222222111 12222 2234456899999999999999 76544
No 23
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.52 E-value=7.7e-07 Score=69.81 Aligned_cols=95 Identities=28% Similarity=0.338 Sum_probs=63.1
Q ss_pred EeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCceEEee
Q 017514 55 ADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTG 134 (370)
Q Consensus 55 aD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 134 (370)
+|+|||+|.++..+. ++ +..+|+-.|.- +......++..... ...+..+
T Consensus 1 LdiG~G~G~~~~~l~--------~~--------~~~~v~~~D~~-----------~~~~~~~~~~~~~~----~~~~~~~ 49 (95)
T PF08241_consen 1 LDIGCGTGRFAAALA--------KR--------GGASVTGIDIS-----------EEMLEQARKRLKNE----GVSFRQG 49 (95)
T ss_dssp EEET-TTSHHHHHHH--------HT--------TTCEEEEEES------------HHHHHHHHHHTTTS----TEEEEES
T ss_pred CEecCcCCHHHHHHH--------hc--------cCCEEEEEeCC-----------HHHHHHHHhccccc----Cchheee
Confidence 699999999988777 32 23788888875 33333333322221 2235444
Q ss_pred cCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceE
Q 017514 135 VPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRM 214 (370)
Q Consensus 135 vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~l 214 (370)
++..--||++|+|++++..++||+ + |...+|+.-.+-|+|||++
T Consensus 50 ---d~~~l~~~~~sfD~v~~~~~~~~~---~------------------------------~~~~~l~e~~rvLk~gG~l 93 (95)
T PF08241_consen 50 ---DAEDLPFPDNSFDVVFSNSVLHHL---E------------------------------DPEAALREIYRVLKPGGRL 93 (95)
T ss_dssp ---BTTSSSS-TT-EEEEEEESHGGGS---S------------------------------HHHHHHHHHHHHEEEEEEE
T ss_pred ---hHHhCccccccccccccccceeec---c------------------------------CHHHHHHHHHHHcCcCeEE
Confidence 776667799999999999999997 2 2233777889999999999
Q ss_pred EE
Q 017514 215 VL 216 (370)
Q Consensus 215 vl 216 (370)
++
T Consensus 94 ~~ 95 (95)
T PF08241_consen 94 VI 95 (95)
T ss_dssp EE
T ss_pred eC
Confidence 86
No 24
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.48 E-value=1.5e-05 Score=80.42 Aligned_cols=200 Identities=14% Similarity=0.199 Sum_probs=119.5
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCce
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (370)
..+|+|+|||+|..++.+. +.+ ..+|+--|+- +...+...+.. ... .-.
T Consensus 168 g~rVLDIGcG~G~~a~~la--------~~~--------g~~V~giDlS-----------~~~l~~A~~~~-~~l---~v~ 216 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAA--------EHY--------GVSVVGVTIS-----------AEQQKLAQERC-AGL---PVE 216 (383)
T ss_pred CCEEEEeCCCccHHHHHHH--------HHC--------CCEEEEEeCC-----------HHHHHHHHHHh-ccC---eEE
Confidence 4699999999999887664 221 2567777774 32222221211 111 111
Q ss_pred EEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017514 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 210 (370)
Q Consensus 131 f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~ 210 (370)
+ ..+++ ..+ ++++|.++|...++|+ +. +++..+|+.-.+-|+|
T Consensus 217 ~---~~~D~-~~l--~~~fD~Ivs~~~~ehv---g~----------------------------~~~~~~l~~i~r~Lkp 259 (383)
T PRK11705 217 I---RLQDY-RDL--NGQFDRIVSVGMFEHV---GP----------------------------KNYRTYFEVVRRCLKP 259 (383)
T ss_pred E---EECch-hhc--CCCCCEEEEeCchhhC---Ch----------------------------HHHHHHHHHHHHHcCC
Confidence 2 22344 333 5789999999988884 21 2344577778899999
Q ss_pred CceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCc-ccCCHHHHHHHHHhcCceEEEEEEEE
Q 017514 211 EGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQ-YTPSPAEIKSEVIKEGSFTIDHLEVS 289 (370)
Q Consensus 211 GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~-y~~s~eE~~~~ie~~GsF~i~~le~~ 289 (370)
||++++...+.+..... . ..-++.+.+|- +.|+.+++....+ .| |+|..++.+
T Consensus 260 GG~lvl~~i~~~~~~~~--~----------------------~~~i~~yifp~g~lps~~~i~~~~~-~~-~~v~d~~~~ 313 (383)
T PRK11705 260 DGLFLLHTIGSNKTDTN--V----------------------DPWINKYIFPNGCLPSVRQIAQASE-GL-FVMEDWHNF 313 (383)
T ss_pred CcEEEEEEccCCCCCCC--C----------------------CCCceeeecCCCcCCCHHHHHHHHH-CC-cEEEEEecC
Confidence 99999998876643110 0 01133455663 6889999999877 35 888777644
Q ss_pred eecccccccCccccccccccccccchhhhhhHhhhhh--HHHHhhChhHHHHHHHHHHHHHHhhhhhcCCcEEEEEE
Q 017514 290 EVNWNAYQNGFKFNEAVDAFNDGGYNVANCMRAVAEP--LLVSQFGEAIIDELFKRYREIVADRMSKEKTKFINVTV 364 (370)
Q Consensus 290 ~~~w~~~~~~~~~~D~~~~~~~~a~~~a~~~RA~~ep--ll~~hfg~~i~Delf~r~~~~v~~~~~~~~~~~~~~~~ 364 (370)
. ..|++++..|.+.+... -+.+-+|++. -.+|..|-.-.+..+........++++
T Consensus 314 ~-------------------~hy~~TL~~W~~~f~~~~~~~~~~~~~~~-~r~w~~yl~~~~~~F~~~~~~~~q~~~ 370 (383)
T PRK11705 314 G-------------------ADYDRTLMAWHENFEAAWPELADNYSERF-YRMWRYYLLSCAGAFRARDIQLWQVVF 370 (383)
T ss_pred h-------------------hhHHHHHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 2 12344444444433321 1233455544 345777777777777777777666543
No 25
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.45 E-value=1.6e-06 Score=85.16 Aligned_cols=153 Identities=21% Similarity=0.203 Sum_probs=89.7
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCce
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (370)
.-+|+|+|||+|..+..++ .. | + -.|+--|.. -.|-.-|+.+. +..+.. ..+
T Consensus 122 g~~VLDvGCG~G~~~~~~~--------~~----g---~-~~v~GiDpS-~~ml~q~~~~~-------~~~~~~----~~v 173 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRML--------GH----G---A-KSLVGIDPT-VLFLCQFEAVR-------KLLDND----KRA 173 (314)
T ss_pred CCEEEEeccCCcHHHHHHH--------Hc----C---C-CEEEEEcCC-HHHHHHHHHHH-------HHhccC----CCe
Confidence 4699999999999876554 21 1 2 245555642 11211111111 111111 122
Q ss_pred EEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017514 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 210 (370)
Q Consensus 131 f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~ 210 (370)
.+ .++++ +.+.+.+++|.++|+.+|||+.. |. .+|+.-++-|+|
T Consensus 174 ~~--~~~~i-e~lp~~~~FD~V~s~gvL~H~~d-p~--------------------------------~~L~el~r~Lkp 217 (314)
T TIGR00452 174 IL--EPLGI-EQLHELYAFDTVFSMGVLYHRKS-PL--------------------------------EHLKQLKHQLVI 217 (314)
T ss_pred EE--EECCH-HHCCCCCCcCEEEEcchhhccCC-HH--------------------------------HHHHHHHHhcCC
Confidence 11 23344 56666679999999999999533 21 267777899999
Q ss_pred CceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEEEEE
Q 017514 211 EGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVS 289 (370)
Q Consensus 211 GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le~~ 289 (370)
||.|++..+..+..... .+ ...+.+..+.-.++.||.+++...+++.| |+..++...
T Consensus 218 GG~Lvletl~i~g~~~~---------~l------------~p~~ry~k~~nv~flpS~~~L~~~L~~aG-F~~V~i~~~ 274 (314)
T TIGR00452 218 KGELVLETLVIDGDLNT---------VL------------VPKDRYAKMKNVYFIPSVSALKNWLEKVG-FENFRILDV 274 (314)
T ss_pred CCEEEEEEEEecCcccc---------cc------------CchHHHHhccccccCCCHHHHHHHHHHCC-CeEEEEEec
Confidence 99999987654322100 00 01111223333456789999999999999 887665543
No 26
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.45 E-value=4.6e-06 Score=82.79 Aligned_cols=149 Identities=18% Similarity=0.199 Sum_probs=90.1
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCc
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (370)
...+|+|+|||+|..++.+. +.. +..+++..|+. +.......++.... +-
T Consensus 113 ~~~~VLDLGcGtG~~~l~La--------~~~-------~~~~VtgVD~S-----------~~mL~~A~~k~~~~----~i 162 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIV--------KHV-------DAKNVTILDQS-----------PHQLAKAKQKEPLK----EC 162 (340)
T ss_pred CCCEEEEEecCCcHHHHHHH--------HHC-------CCCEEEEEECC-----------HHHHHHHHHhhhcc----CC
Confidence 34799999999999887655 221 22578888874 22222111111110 11
Q ss_pred eEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017514 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~ 209 (370)
-+ +.++...--++++++|+++++.++|++.+ | ...|+.-.+-|+
T Consensus 163 ~~---i~gD~e~lp~~~~sFDvVIs~~~L~~~~d-~--------------------------------~~~L~e~~rvLk 206 (340)
T PLN02490 163 KI---IEGDAEDLPFPTDYADRYVSAGSIEYWPD-P--------------------------------QRGIKEAYRVLK 206 (340)
T ss_pred eE---EeccHHhCCCCCCceeEEEEcChhhhCCC-H--------------------------------HHHHHHHHHhcC
Confidence 23 34466444467889999999999998443 1 114667788999
Q ss_pred cCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEEEEE
Q 017514 210 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVS 289 (370)
Q Consensus 210 ~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le~~ 289 (370)
|||++++.-....+ .| +..-+.++ -..+++.+|+.+.+++.| |+..+++.+
T Consensus 207 PGG~LvIi~~~~p~----------~~--~~r~~~~~----------------~~~~~t~eEl~~lL~~aG-F~~V~i~~i 257 (340)
T PLN02490 207 IGGKACLIGPVHPT----------FW--LSRFFADV----------------WMLFPKEEEYIEWFTKAG-FKDVKLKRI 257 (340)
T ss_pred CCcEEEEEEecCcc----------hh--HHHHhhhh----------------hccCCCHHHHHHHHHHCC-CeEEEEEEc
Confidence 99999886332111 01 11111110 012478999999999999 988777766
Q ss_pred eecc
Q 017514 290 EVNW 293 (370)
Q Consensus 290 ~~~w 293 (370)
...|
T Consensus 258 ~~~~ 261 (340)
T PLN02490 258 GPKW 261 (340)
T ss_pred Chhh
Confidence 4444
No 27
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.44 E-value=7.7e-06 Score=75.59 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=86.3
Q ss_pred EEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHH---hhCCCCCCCCc
Q 017514 53 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASGAAGQ 129 (370)
Q Consensus 53 ~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~---~~~~~~~~~~~ 129 (370)
+|+|+|||+|..+..+. +.+ |..+|+--|+. +........ ..+... +-
T Consensus 2 ~vLDiGcG~G~~~~~la--------~~~-------~~~~v~gid~s-----------~~~~~~a~~~~~~~gl~~---~i 52 (224)
T smart00828 2 RVLDFGCGYGSDLIDLA--------ERH-------PHLQLHGYTIS-----------PEQAEVGRERIRALGLQG---RI 52 (224)
T ss_pred eEEEECCCCCHHHHHHH--------HHC-------CCCEEEEEECC-----------HHHHHHHHHHHHhcCCCc---ce
Confidence 69999999999876554 322 23567777763 111111111 111110 11
Q ss_pred eEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017514 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~ 209 (370)
.|.. +++....+ ++++|+++|..++|++.+ +..+|+.-++-|+
T Consensus 53 ~~~~---~d~~~~~~-~~~fD~I~~~~~l~~~~~---------------------------------~~~~l~~~~~~Lk 95 (224)
T smart00828 53 RIFY---RDSAKDPF-PDTYDLVFGFEVIHHIKD---------------------------------KMDLFSNISRHLK 95 (224)
T ss_pred EEEe---cccccCCC-CCCCCEeehHHHHHhCCC---------------------------------HHHHHHHHHHHcC
Confidence 3333 24433323 468999999999999533 1236777789999
Q ss_pred cCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEEEEE
Q 017514 210 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVS 289 (370)
Q Consensus 210 ~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le~~ 289 (370)
|||++++.-...+...+ +.. -..+.|.++.+|+...+++.| |++.+.+.+
T Consensus 96 pgG~l~i~~~~~~~~~~------------------------~~~-----~~~~~~~~s~~~~~~~l~~~G-f~~~~~~~~ 145 (224)
T smart00828 96 DGGHLVLADFIANLLSA------------------------IEH-----EETTSYLVTREEWAELLARNN-LRVVEGVDA 145 (224)
T ss_pred CCCEEEEEEcccccCcc------------------------ccc-----cccccccCCHHHHHHHHHHCC-CeEEEeEEC
Confidence 99999987653221000 000 123456899999999999999 988777665
Q ss_pred e
Q 017514 290 E 290 (370)
Q Consensus 290 ~ 290 (370)
.
T Consensus 146 ~ 146 (224)
T smart00828 146 S 146 (224)
T ss_pred c
Confidence 3
No 28
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.42 E-value=6.8e-06 Score=75.14 Aligned_cols=167 Identities=16% Similarity=0.194 Sum_probs=95.2
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCc
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (370)
...+|+|+|||.|..+..+. +.. + +..+++.-|+. +............. .+-
T Consensus 39 ~~~~vldiG~G~G~~~~~~~--------~~~-----~-~~~~~~~iD~~-----------~~~~~~~~~~~~~~---~~i 90 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELA--------KSA-----P-DRGKVTGVDFS-----------SEMLEVAKKKSELP---LNI 90 (223)
T ss_pred CCCeEEEeCCCCChhHHHHH--------Hhc-----C-CCceEEEEECC-----------HHHHHHHHHHhccC---CCc
Confidence 45799999999999877665 221 1 12578888874 22211111111100 022
Q ss_pred eEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017514 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~ 209 (370)
.|.. +++.+-.++++++|+++++..+|++.. ...+|+.-.+-|+
T Consensus 91 ~~~~---~d~~~~~~~~~~~D~i~~~~~~~~~~~---------------------------------~~~~l~~~~~~L~ 134 (223)
T TIGR01934 91 EFIQ---ADAEALPFEDNSFDAVTIAFGLRNVTD---------------------------------IQKALREMYRVLK 134 (223)
T ss_pred eEEe---cchhcCCCCCCcEEEEEEeeeeCCccc---------------------------------HHHHHHHHHHHcC
Confidence 3433 366565577889999999999998543 1236788889999
Q ss_pred cCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHh---cCCcchhhhccCC----cCcccCCHHHHHHHHHhcCceE
Q 017514 210 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVS---EGLIEEEKVNCFN----IPQYTPSPAEIKSEVIKEGSFT 282 (370)
Q Consensus 210 ~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~---eG~i~~e~~d~f~----~P~y~~s~eE~~~~ie~~GsF~ 282 (370)
|||++++.-.......+ +..+.+.+..... .+..+.. .+.+. ...-+++.+|++..+++.| |+
T Consensus 135 ~gG~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~ 204 (223)
T TIGR01934 135 PGGRLVILEFSKPANAL--------LKKFYKFYLKNVLPSIGGLISKN-AEAYTYLPESIRAFPSQEELAAMLKEAG-FE 204 (223)
T ss_pred CCcEEEEEEecCCCchh--------hHHHHHHHHHHhhhhhhhhhcCC-chhhHHHHHHHHhCCCHHHHHHHHHHcC-Cc
Confidence 99999986654332211 1122222211100 0111111 11111 0122578999999999999 98
Q ss_pred EEEEEEEe
Q 017514 283 IDHLEVSE 290 (370)
Q Consensus 283 i~~le~~~ 290 (370)
+...+.+.
T Consensus 205 ~~~~~~~~ 212 (223)
T TIGR01934 205 EVRYRSLT 212 (223)
T ss_pred cceeeeee
Confidence 87777653
No 29
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.42 E-value=3.7e-06 Score=76.96 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=81.6
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhh-CCCCCCCCc
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ 129 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~ 129 (370)
..+|+|+|||+|.+++.+. ++ -.+|+.-|+. +...+..++.. .... .+
T Consensus 31 ~~~vLDiGcG~G~~a~~La--------~~---------g~~V~gvD~S-----------~~~i~~a~~~~~~~~~---~~ 79 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLA--------AN---------GFDVTAWDKN-----------PMSIANLERIKAAENL---DN 79 (197)
T ss_pred CCcEEEECCCCCHHHHHHH--------HC---------CCEEEEEeCC-----------HHHHHHHHHHHHHcCC---Cc
Confidence 4699999999999998766 21 1567777874 22222111111 1111 11
Q ss_pred eEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017514 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~ 209 (370)
+..+..++- .+-+++++|+++|+.++||+.. .|...+++.-++-|+
T Consensus 80 --v~~~~~d~~-~~~~~~~fD~I~~~~~~~~~~~-------------------------------~~~~~~l~~i~~~Lk 125 (197)
T PRK11207 80 --LHTAVVDLN-NLTFDGEYDFILSTVVLMFLEA-------------------------------KTIPGLIANMQRCTK 125 (197)
T ss_pred --ceEEecChh-hCCcCCCcCEEEEecchhhCCH-------------------------------HHHHHHHHHHHHHcC
Confidence 122223552 3334578999999999999642 234457788888999
Q ss_pred cCceEEEE-eeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEEE
Q 017514 210 AEGRMVLT-FLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLE 287 (370)
Q Consensus 210 ~GG~lvl~-~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le 287 (370)
|||++++. .+...+ .+.. .| |-+..+.+|+.+.++ | |++.+.+
T Consensus 126 pgG~~~~~~~~~~~~-~~~~-------------------~~------------~~~~~~~~el~~~~~--~-~~~~~~~ 169 (197)
T PRK11207 126 PGGYNLIVAAMDTAD-YPCT-------------------VG------------FPFAFKEGELRRYYE--G-WEMVKYN 169 (197)
T ss_pred CCcEEEEEEEecCCC-CCCC-------------------CC------------CCCccCHHHHHHHhC--C-CeEEEee
Confidence 99996554 333221 1100 01 236678999998887 6 8776553
No 30
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.37 E-value=2.7e-07 Score=86.96 Aligned_cols=162 Identities=20% Similarity=0.293 Sum_probs=66.0
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhC-CCCCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAAG 128 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~-~~~~~~~ 128 (370)
...+|+|+|||+|-.|+.+. ++ -.|..+|+.-|.. +.+...-+++.. ... .+
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~--------~~------~~~~~~v~~vD~s-----------~~ML~~a~~k~~~~~~--~~ 99 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELA--------RR------VGPNGKVVGVDIS-----------PGMLEVARKKLKREGL--QN 99 (233)
T ss_dssp S--EEEEET-TTSHHHHHHG--------GG------SS---EEEEEES------------HHHHHHHHHHHHHTT----S
T ss_pred CCCEEEEeCCChHHHHHHHH--------HH------CCCccEEEEecCC-----------HHHHHHHHHHHHhhCC--CC
Confidence 35799999999998887665 32 1245788888986 544333322211 111 01
Q ss_pred ceEEeecCCCccccc-CCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017514 129 QCFFTGVPGSFYGRL-FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE 207 (370)
Q Consensus 129 ~~f~~~vpgSFy~~l-~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~E 207 (370)
--|+.| +. +.| ||++|+|.+++++.||-+.+.+ ..|+.-.+-
T Consensus 100 i~~v~~---da-~~lp~~d~sfD~v~~~fglrn~~d~~---------------------------------~~l~E~~RV 142 (233)
T PF01209_consen 100 IEFVQG---DA-EDLPFPDNSFDAVTCSFGLRNFPDRE---------------------------------RALREMYRV 142 (233)
T ss_dssp EEEEE----BT-TB--S-TT-EEEEEEES-GGG-SSHH---------------------------------HHHHHHHHH
T ss_pred eeEEEc---CH-HHhcCCCCceeEEEHHhhHHhhCCHH---------------------------------HHHHHHHHH
Confidence 245555 55 344 6899999999999999864411 145666788
Q ss_pred hccCceEEEEeeccCCCCCCCchhhhHHHH----HHHHHHHHHhcCCcchhhhccCC----cCcccCCHHHHHHHHHhcC
Q 017514 208 LVAEGRMVLTFLGRKSQDPSSKECCYIWEL----LATALNNMVSEGLIEEEKVNCFN----IPQYTPSPAEIKSEVIKEG 279 (370)
Q Consensus 208 L~~GG~lvl~~~g~~~~~~~~~~~~~~~~~----l~~al~~mv~eG~i~~e~~d~f~----~P~y~~s~eE~~~~ie~~G 279 (370)
|+|||++++.=++++.... ...+|.. +--.+- ++++.+ .+.+. .-.-+|+.+|+.+.+++.|
T Consensus 143 LkPGG~l~ile~~~p~~~~----~~~~~~~y~~~ilP~~g-----~l~~~~-~~~Y~yL~~Si~~f~~~~~~~~~l~~~G 212 (233)
T PF01209_consen 143 LKPGGRLVILEFSKPRNPL----LRALYKFYFKYILPLIG-----RLLSGD-REAYRYLPESIRRFPSPEELKELLEEAG 212 (233)
T ss_dssp EEEEEEEEEEEEEB-SSHH----HHHHHHH--------------------------------------------------
T ss_pred cCCCeEEEEeeccCCCCch----hhceeeeeecccccccc-----cccccc-cccccccccccccccccccccccccccc
Confidence 9999999999888876421 1112211 111221 223332 22221 2224689999999999999
Q ss_pred ceEEEEE
Q 017514 280 SFTIDHL 286 (370)
Q Consensus 280 sF~i~~l 286 (370)
|+..+.
T Consensus 213 -f~~v~~ 218 (233)
T PF01209_consen 213 -FKNVEY 218 (233)
T ss_dssp -------
T ss_pred -cccccc
Confidence 864333
No 31
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.27 E-value=8.9e-06 Score=78.71 Aligned_cols=135 Identities=18% Similarity=0.199 Sum_probs=82.8
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhC-CCCCCCCce
Q 017514 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAAGQC 130 (370)
Q Consensus 52 ~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~-~~~~~~~~~ 130 (370)
-+|+|+|||+|.|++.+. +. -.+|+.-|.. +...+...+... .. -++
T Consensus 122 ~~vLDlGcG~G~~~~~la--------~~---------g~~V~avD~s-----------~~ai~~~~~~~~~~~----l~v 169 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLA--------LL---------GFDVTAVDIN-----------QQSLENLQEIAEKEN----LNI 169 (287)
T ss_pred CCEEEeCCCCCHHHHHHH--------HC---------CCEEEEEECC-----------HHHHHHHHHHHHHcC----Cce
Confidence 499999999999998776 21 1577777874 222222211111 11 111
Q ss_pred EEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017514 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 210 (370)
Q Consensus 131 f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~ 210 (370)
..+.+++- ...+++++|+++|+.+||+++. .++..+|+.-.+-|+|
T Consensus 170 --~~~~~D~~-~~~~~~~fD~I~~~~vl~~l~~-------------------------------~~~~~~l~~~~~~Lkp 215 (287)
T PRK12335 170 --RTGLYDIN-SASIQEEYDFILSTVVLMFLNR-------------------------------ERIPAIIKNMQEHTNP 215 (287)
T ss_pred --EEEEechh-cccccCCccEEEEcchhhhCCH-------------------------------HHHHHHHHHHHHhcCC
Confidence 11222332 2224789999999999999642 2445578888899999
Q ss_pred CceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcC-cccCCHHHHHHHHHhcCceEEEEEE
Q 017514 211 EGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIP-QYTPSPAEIKSEVIKEGSFTIDHLE 287 (370)
Q Consensus 211 GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P-~y~~s~eE~~~~ie~~GsF~i~~le 287 (370)
||++++......+..+ ...| -+..+.+|+++.+.. |+|.+.+
T Consensus 216 gG~~l~v~~~~~~~~~--------------------------------~~~p~~~~~~~~el~~~~~~---~~i~~~~ 258 (287)
T PRK12335 216 GGYNLIVCAMDTEDYP--------------------------------CPMPFSFTFKEGELKDYYQD---WEIVKYN 258 (287)
T ss_pred CcEEEEEEecccccCC--------------------------------CCCCCCcccCHHHHHHHhCC---CEEEEEe
Confidence 9997775443222111 1123 356789999998863 8877664
No 32
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.18 E-value=8.4e-06 Score=74.45 Aligned_cols=137 Identities=11% Similarity=0.076 Sum_probs=81.0
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhh-CCCCCCCCc
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ 129 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~ 129 (370)
+.+|+|+|||+|.+++.+. ++ -.+|+.-|+. +.......... ..+. .-
T Consensus 31 ~~~vLDiGcG~G~~a~~la--------~~---------g~~V~~iD~s-----------~~~l~~a~~~~~~~~~---~v 79 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLS--------LA---------GYDVRAWDHN-----------PASIASVLDMKARENL---PL 79 (195)
T ss_pred CCcEEEeCCCCCHHHHHHH--------HC---------CCeEEEEECC-----------HHHHHHHHHHHHHhCC---Cc
Confidence 4699999999999998776 21 1577888875 22222111111 0111 11
Q ss_pred eEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017514 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~ 209 (370)
.+.. .+. ....+++++|+++|+.++||++. .++..+++.-++-|+
T Consensus 80 ~~~~---~d~-~~~~~~~~fD~I~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~Lk 124 (195)
T TIGR00477 80 RTDA---YDI-NAAALNEDYDFIFSTVVFMFLQA-------------------------------GRVPEIIANMQAHTR 124 (195)
T ss_pred eeEe---ccc-hhccccCCCCEEEEecccccCCH-------------------------------HHHHHHHHHHHHHhC
Confidence 1111 122 12223568999999999999643 234457788889999
Q ss_pred cCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEEE
Q 017514 210 AEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLE 287 (370)
Q Consensus 210 ~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le 287 (370)
|||++++...-..+..+. | . .|-|-.+++|+++.++ + |++.+.+
T Consensus 125 pgG~lli~~~~~~~~~~~---------------------~---------~-~~~~~~~~~el~~~f~--~-~~~~~~~ 168 (195)
T TIGR00477 125 PGGYNLIVAAMDTADYPC---------------------H---------M-PFSFTFKEDELRQYYA--D-WELLKYN 168 (195)
T ss_pred CCcEEEEEEecccCCCCC---------------------C---------C-CcCccCCHHHHHHHhC--C-CeEEEee
Confidence 999966544322211110 1 0 1236788999999886 3 7776665
No 33
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.18 E-value=0.00013 Score=71.12 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=88.3
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCC
Q 017514 49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG 128 (370)
Q Consensus 49 ~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~ 128 (370)
.+..+|+|+|||+|..++.+. +++ |..+++.-|+|. ....... .. .+.+.. .
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~--------~~~-------p~~~~~~~D~~~-----~~~~a~~---~~-~~~gl~----~ 199 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAML--------KHF-------PELDSTILNLPG-----AIDLVNE---NA-AEKGVA----D 199 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHH--------HHC-------CCCEEEEEecHH-----HHHHHHH---HH-HhCCcc----c
Confidence 345799999999998877666 432 567888889861 1111111 11 111211 1
Q ss_pred ceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017514 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (370)
Q Consensus 129 ~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL 208 (370)
+ +..++|+|++.-+|+ .|+++.+..+|-. ++ ++-..+|+.-++-|
T Consensus 200 r--v~~~~~d~~~~~~~~--~D~v~~~~~lh~~---~~----------------------------~~~~~il~~~~~~L 244 (306)
T TIGR02716 200 R--MRGIAVDIYKESYPE--ADAVLFCRILYSA---NE----------------------------QLSTIMCKKAFDAM 244 (306)
T ss_pred e--EEEEecCccCCCCCC--CCEEEeEhhhhcC---Ch----------------------------HHHHHHHHHHHHhc
Confidence 2 233566998755565 4988888888832 21 11223677778899
Q ss_pred ccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEE
Q 017514 209 VAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTID 284 (370)
Q Consensus 209 ~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~ 284 (370)
+|||++++.=...++... . .+..+...+..+ |+.. .+.-.++.+|+.+++++.| |+..
T Consensus 245 ~pgG~l~i~d~~~~~~~~--~----~~~~~~~~~~~~---~~~~--------~~~~~~~~~e~~~ll~~aG-f~~v 302 (306)
T TIGR02716 245 RSGGRLLILDMVIDDPEN--P----NFDYLSHYILGA---GMPF--------SVLGFKEQARYKEILESLG-YKDV 302 (306)
T ss_pred CCCCEEEEEEeccCCCCC--c----hhhHHHHHHHHc---cccc--------ccccCCCHHHHHHHHHHcC-CCee
Confidence 999999888443332211 1 112222222211 2110 1123556899999999999 8643
No 34
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.14 E-value=0.00017 Score=69.64 Aligned_cols=151 Identities=19% Similarity=0.271 Sum_probs=79.4
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHH----hhCCCCCC
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK----QLGSASGA 126 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~----~~~~~~~~ 126 (370)
-.+|+|+|||-|..++.+. +++ | .+|.--.|. ..+..+.+ +.|..
T Consensus 63 G~~vLDiGcGwG~~~~~~a--------~~~---g-----~~v~gitlS------------~~Q~~~a~~~~~~~gl~--- 111 (273)
T PF02353_consen 63 GDRVLDIGCGWGGLAIYAA--------ERY---G-----CHVTGITLS------------EEQAEYARERIREAGLE--- 111 (273)
T ss_dssp T-EEEEES-TTSHHHHHHH--------HHH----------EEEEEES-------------HHHHHHHHHHHHCSTSS---
T ss_pred CCEEEEeCCCccHHHHHHH--------HHc---C-----cEEEEEECC------------HHHHHHHHHHHHhcCCC---
Confidence 3699999999999988777 443 1 333333331 22222211 11211
Q ss_pred CCceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 127 AGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 206 (370)
Q Consensus 127 ~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~ 206 (370)
..+-+.- .+| ..+ |. +.|-++|.-++.-+ +. +++..|++.-++
T Consensus 112 -~~v~v~~--~D~-~~~-~~-~fD~IvSi~~~Ehv---g~----------------------------~~~~~~f~~~~~ 154 (273)
T PF02353_consen 112 -DRVEVRL--QDY-RDL-PG-KFDRIVSIEMFEHV---GR----------------------------KNYPAFFRKISR 154 (273)
T ss_dssp -STEEEEE--S-G-GG-----S-SEEEEESEGGGT---CG----------------------------GGHHHHHHHHHH
T ss_pred -CceEEEE--eec-ccc-CC-CCCEEEEEechhhc---Ch----------------------------hHHHHHHHHHHH
Confidence 2222211 255 333 22 88998888776553 21 456668999999
Q ss_pred hhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCc-ccCCHHHHHHHHHhcCceEEEE
Q 017514 207 ELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQ-YTPSPAEIKSEVIKEGSFTIDH 285 (370)
Q Consensus 207 EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~-y~~s~eE~~~~ie~~GsF~i~~ 285 (370)
=|+|||++++...+..+.. ... . ...+-+-+....+|- +.|+.+|+...+++.| |+|.+
T Consensus 155 ~LkpgG~~~lq~i~~~~~~---------~~~-~---------~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~-l~v~~ 214 (273)
T PF02353_consen 155 LLKPGGRLVLQTITHRDPP---------YHA-E---------RRSSSDFIRKYIFPGGYLPSLSEILRAAEDAG-LEVED 214 (273)
T ss_dssp HSETTEEEEEEEEEE--HH---------HHH-C---------TTCCCHHHHHHTSTTS---BHHHHHHHHHHTT--EEEE
T ss_pred hcCCCcEEEEEeccccccc---------chh-h---------cCCCceEEEEeeCCCCCCCCHHHHHHHHhcCC-EEEEE
Confidence 9999999999988765431 000 0 000001122233454 6689999999889888 98877
Q ss_pred EEEE
Q 017514 286 LEVS 289 (370)
Q Consensus 286 le~~ 289 (370)
.+.+
T Consensus 215 ~~~~ 218 (273)
T PF02353_consen 215 VENL 218 (273)
T ss_dssp EEE-
T ss_pred EEEc
Confidence 6655
No 35
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.05 E-value=0.00017 Score=66.73 Aligned_cols=30 Identities=10% Similarity=0.168 Sum_probs=25.4
Q ss_pred CcCcccCCHHHHHHHHHhcCceEEEEEEEEe
Q 017514 260 NIPQYTPSPAEIKSEVIKEGSFTIDHLEVSE 290 (370)
Q Consensus 260 ~~P~y~~s~eE~~~~ie~~GsF~i~~le~~~ 290 (370)
..++++++++|+..++++.| |++...+.+.
T Consensus 179 ~~~~~~~~~~~~~~~l~~~G-f~v~~~~~~~ 208 (219)
T TIGR02021 179 ATSAYLHPMTDLERALGELG-WKIVREGLVS 208 (219)
T ss_pred ccceEEecHHHHHHHHHHcC-ceeeeeeccc
Confidence 35678899999999999999 9998887553
No 36
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.04 E-value=9.7e-05 Score=70.55 Aligned_cols=151 Identities=19% Similarity=0.189 Sum_probs=85.5
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHH---hhCCCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASGA 126 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~---~~~~~~~~ 126 (370)
..-+|+|+|||+|..++.+. +.. + +.-+|+.-|.- +...+..++ ..+..
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a--------~~~---g---~~~~v~gvD~s-----------~~~l~~A~~~~~~~g~~--- 128 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAA--------RRV---G---PTGKVIGVDMT-----------PEMLAKARANARKAGYT--- 128 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHH--------HHh---C---CCCEEEEECCC-----------HHHHHHHHHHHHHcCCC---
Confidence 34699999999997766443 221 1 33578888874 222222111 11211
Q ss_pred CCceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 127 AGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 206 (370)
Q Consensus 127 ~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~ 206 (370)
+-.|.. +++..--+|++++|+++|..++||....+ ..|+.-.+
T Consensus 129 -~v~~~~---~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~---------------------------------~~l~~~~r 171 (272)
T PRK11873 129 -NVEFRL---GEIEALPVADNSVDVIISNCVINLSPDKE---------------------------------RVFKEAFR 171 (272)
T ss_pred -CEEEEE---cchhhCCCCCCceeEEEEcCcccCCCCHH---------------------------------HHHHHHHH
Confidence 223433 36533235788999999999999842211 13455577
Q ss_pred hhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEE
Q 017514 207 ELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHL 286 (370)
Q Consensus 207 EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~l 286 (370)
-|+|||++++.-.......+ ..+...+.-. .|. .....+.+|+...+++.| |...++
T Consensus 172 ~LkpGG~l~i~~~~~~~~~~---------~~~~~~~~~~--~~~-----------~~~~~~~~e~~~~l~~aG-f~~v~i 228 (272)
T PRK11873 172 VLKPGGRFAISDVVLRGELP---------EEIRNDAELY--AGC-----------VAGALQEEEYLAMLAEAG-FVDITI 228 (272)
T ss_pred HcCCCcEEEEEEeeccCCCC---------HHHHHhHHHH--hcc-----------ccCCCCHHHHHHHHHHCC-CCceEE
Confidence 89999999997554322111 1111111111 011 112457899999999999 776655
Q ss_pred EE
Q 017514 287 EV 288 (370)
Q Consensus 287 e~ 288 (370)
..
T Consensus 229 ~~ 230 (272)
T PRK11873 229 QP 230 (272)
T ss_pred Ee
Confidence 43
No 37
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.03 E-value=8.4e-05 Score=60.63 Aligned_cols=105 Identities=22% Similarity=0.286 Sum_probs=66.8
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhh---CCCCCCC
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL---GSASGAA 127 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~---~~~~~~~ 127 (370)
.-+|+|+|||+|..++.+. ++. |..+|+--|.- |...+...+.. +...
T Consensus 2 ~~~vLDlGcG~G~~~~~l~--------~~~-------~~~~v~gvD~s-----------~~~~~~a~~~~~~~~~~~--- 52 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALA--------RLF-------PGARVVGVDIS-----------PEMLEIARERAAEEGLSD--- 52 (112)
T ss_dssp TCEEEEETTTTSHHHHHHH--------HHH-------TTSEEEEEESS-----------HHHHHHHHHHHHHTTTTT---
T ss_pred CCEEEEEcCcCCHHHHHHH--------hcC-------CCCEEEEEeCC-----------HHHHHHHHHHHHhcCCCC---
Confidence 3589999999999999877 321 45778888874 43333322222 2110
Q ss_pred CceEEeecCCCcccccC-CCCceeEEEecc-ccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 128 GQCFFTGVPGSFYGRLF-PRNSVHLFHSSY-SLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS 205 (370)
Q Consensus 128 ~~~f~~~vpgSFy~~l~-p~~sv~~~~S~~-alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra 205 (370)
+-.|..+ ++ .... ..+.+|++++.. ++|++-.. .+...+|+.-.
T Consensus 53 ~i~~~~~---d~-~~~~~~~~~~D~v~~~~~~~~~~~~~------------------------------~~~~~~l~~~~ 98 (112)
T PF12847_consen 53 RITFVQG---DA-EFDPDFLEPFDLVICSGFTLHFLLPL------------------------------DERRRVLERIR 98 (112)
T ss_dssp TEEEEES---CC-HGGTTTSSCEEEEEECSGSGGGCCHH------------------------------HHHHHHHHHHH
T ss_pred CeEEEEC---cc-ccCcccCCCCCEEEECCCccccccch------------------------------hHHHHHHHHHH
Confidence 2345444 55 2222 334599999999 77753221 24455788889
Q ss_pred HhhccCceEEEEe
Q 017514 206 EELVAEGRMVLTF 218 (370)
Q Consensus 206 ~EL~~GG~lvl~~ 218 (370)
+-|+|||+|++..
T Consensus 99 ~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 99 RLLKPGGRLVINT 111 (112)
T ss_dssp HHEEEEEEEEEEE
T ss_pred HhcCCCcEEEEEE
Confidence 9999999999874
No 38
>PRK06922 hypothetical protein; Provisional
Probab=98.02 E-value=1.9e-05 Score=83.79 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=73.1
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhC-CCCCCCCc
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAAGQ 129 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~-~~~~~~~~ 129 (370)
..+|+|+|||+|..+..+. +++ |..+|+.-|+. +......+.... ... +.
T Consensus 419 g~rVLDIGCGTG~ls~~LA--------~~~-------P~~kVtGIDIS-----------~~MLe~Ararl~~~g~---~i 469 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIE--------EET-------EDKRIYGIDIS-----------ENVIDTLKKKKQNEGR---SW 469 (677)
T ss_pred CCEEEEeCCCCCHHHHHHH--------HhC-------CCCEEEEEECC-----------HHHHHHHHHHhhhcCC---Ce
Confidence 4799999999997765444 321 45889999987 443333222111 110 22
Q ss_pred eEEeecCCCcc--cccCCCCceeEEEeccccccc-cCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 130 CFFTGVPGSFY--GRLFPRNSVHLFHSSYSLQWL-SQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 206 (370)
Q Consensus 130 ~f~~~vpgSFy--~~l~p~~sv~~~~S~~alhWl-s~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~ 206 (370)
.++.| +.- ...||++++|++++++++||+ +.+|..-. +|. .+|...+|+.-.+
T Consensus 470 e~I~g---Da~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~------------------~f~---~edl~kiLreI~R 525 (677)
T PRK06922 470 NVIKG---DAINLSSSFEKESVDTIVYSSILHELFSYIEYEGK------------------KFN---HEVIKKGLQSAYE 525 (677)
T ss_pred EEEEc---chHhCccccCCCCEEEEEEchHHHhhhhhcccccc------------------ccc---HHHHHHHHHHHHH
Confidence 33333 332 223788999999999999974 55553110 000 1577789999999
Q ss_pred hhccCceEEEE
Q 017514 207 ELVAEGRMVLT 217 (370)
Q Consensus 207 EL~~GG~lvl~ 217 (370)
-|+|||++++.
T Consensus 526 VLKPGGrLII~ 536 (677)
T PRK06922 526 VLKPGGRIIIR 536 (677)
T ss_pred HcCCCcEEEEE
Confidence 99999999996
No 39
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.99 E-value=5.9e-05 Score=65.67 Aligned_cols=104 Identities=21% Similarity=0.300 Sum_probs=69.8
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHH---hhCCCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASGA 126 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~---~~~~~~~~ 126 (370)
+..+|+|+|||+|..+..+.. . .+ |..+++.-|+- +..-+..++ +.+..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~--------~---~~---~~~~i~gvD~s-----------~~~i~~a~~~~~~~~~~--- 54 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAK--------E---LN---PGAKIIGVDIS-----------EEMIEYAKKRAKELGLD--- 54 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHH--------H---ST---TTSEEEEEESS-----------HHHHHHHHHHHHHTTST---
T ss_pred CCCEEEEecCcCcHHHHHHHH--------h---cC---CCCEEEEEECc-----------HHHHHHhhccccccccc---
Confidence 458999999999999887662 2 11 34789999986 444333322 12221
Q ss_pred CCceEEeecCCCccccc---CCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017514 127 AGQCFFTGVPGSFYGRL---FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKC 203 (370)
Q Consensus 127 ~~~~f~~~vpgSFy~~l---~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~ 203 (370)
+-.|..+ ++.+ + ++ +.+|++++..++||+.. ...+|+.
T Consensus 55 -ni~~~~~---d~~~-l~~~~~-~~~D~I~~~~~l~~~~~---------------------------------~~~~l~~ 95 (152)
T PF13847_consen 55 -NIEFIQG---DIED-LPQELE-EKFDIIISNGVLHHFPD---------------------------------PEKVLKN 95 (152)
T ss_dssp -TEEEEES---BTTC-GCGCSS-TTEEEEEEESTGGGTSH---------------------------------HHHHHHH
T ss_pred -ccceEEe---ehhc-cccccC-CCeeEEEEcCchhhccC---------------------------------HHHHHHH
Confidence 2355554 5544 3 33 89999999999999554 1225667
Q ss_pred HHHhhccCceEEEEeec
Q 017514 204 RSEELVAEGRMVLTFLG 220 (370)
Q Consensus 204 Ra~EL~~GG~lvl~~~g 220 (370)
-.+-|++||.+++....
T Consensus 96 ~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 96 IIRLLKPGGILIISDPN 112 (152)
T ss_dssp HHHHEEEEEEEEEEEEE
T ss_pred HHHHcCCCcEEEEEECC
Confidence 78899999999999886
No 40
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.99 E-value=9.7e-05 Score=67.14 Aligned_cols=26 Identities=8% Similarity=-0.175 Sum_probs=23.3
Q ss_pred cccCCHHHHHHHHHhcCceEEEEEEEE
Q 017514 263 QYTPSPAEIKSEVIKEGSFTIDHLEVS 289 (370)
Q Consensus 263 ~y~~s~eE~~~~ie~~GsF~i~~le~~ 289 (370)
..+++.+|+.+.+++.| |++.....+
T Consensus 143 ~~~~s~~~~~~ll~~~G-f~v~~~~~~ 168 (194)
T TIGR02081 143 IHFCTIADFEDLCGELN-LRILDRAAF 168 (194)
T ss_pred cccCcHHHHHHHHHHCC-CEEEEEEEe
Confidence 46789999999999999 999888877
No 41
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.95 E-value=4.2e-05 Score=70.07 Aligned_cols=119 Identities=15% Similarity=0.125 Sum_probs=67.5
Q ss_pred HHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhh
Q 017514 30 SIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSL 109 (370)
Q Consensus 30 ~~~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l 109 (370)
....+.+.+++.. -++-+++|+|||.|+||+.+. ++ | +.|..-|.-
T Consensus 16 ~~~hs~v~~a~~~------~~~g~~LDlgcG~GRNalyLA--------~~----G-----~~VtAvD~s----------- 61 (192)
T PF03848_consen 16 TPTHSEVLEAVPL------LKPGKALDLGCGEGRNALYLA--------SQ----G-----FDVTAVDIS----------- 61 (192)
T ss_dssp ----HHHHHHCTT------S-SSEEEEES-TTSHHHHHHH--------HT----T------EEEEEESS-----------
T ss_pred CCCcHHHHHHHhh------cCCCcEEEcCCCCcHHHHHHH--------HC----C-----CeEEEEECC-----------
Confidence 3445556666421 235799999999999999888 32 2 788888875
Q ss_pred HHHHHHHHHhh-CCCCCCCCceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHH
Q 017514 110 ASFQKILRKQL-GSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTA 188 (370)
Q Consensus 110 ~~~~~~~~~~~-~~~~~~~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~a 188 (370)
+.-.+++.+.. ..+. ++ ...-.++-+. -++...|+++|...+|.|.. +
T Consensus 62 ~~al~~l~~~a~~~~l----~i--~~~~~Dl~~~-~~~~~yD~I~st~v~~fL~~-~----------------------- 110 (192)
T PF03848_consen 62 PVALEKLQRLAEEEGL----DI--RTRVADLNDF-DFPEEYDFIVSTVVFMFLQR-E----------------------- 110 (192)
T ss_dssp HHHHHHHHHHHHHTT-----TE--EEEE-BGCCB-S-TTTEEEEEEESSGGGS-G-G-----------------------
T ss_pred HHHHHHHHHHHhhcCc----ee--EEEEecchhc-cccCCcCEEEEEEEeccCCH-H-----------------------
Confidence 22222221111 0111 11 1111244222 34578999999999999764 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCceEEEEeec
Q 017514 189 YYEQFQRDFSLFLKCRSEELVAEGRMVLTFLG 220 (370)
Q Consensus 189 y~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g 220 (370)
.+..+++...+.++|||.+++..+-
T Consensus 111 -------~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 111 -------LRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp -------GHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred -------HHHHHHHHHHhhcCCcEEEEEEEec
Confidence 1223677778999999998886553
No 42
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.94 E-value=8e-05 Score=72.66 Aligned_cols=131 Identities=19% Similarity=0.189 Sum_probs=77.9
Q ss_pred HHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHH
Q 017514 34 PITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQ 113 (370)
Q Consensus 34 ~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~ 113 (370)
.++++..+++.... +...+|+|+|||+|..|..+++... . ..+++--|+. +.+.
T Consensus 48 ~il~~~~~~ia~~~-~~~~~iLELGcGtG~~t~~Ll~~l~-------------~-~~~~~~iDiS-----------~~mL 101 (301)
T TIGR03438 48 AILERHADEIAAAT-GAGCELVELGSGSSRKTRLLLDALR-------------Q-PARYVPIDIS-----------ADAL 101 (301)
T ss_pred HHHHHHHHHHHHhh-CCCCeEEecCCCcchhHHHHHHhhc-------------c-CCeEEEEECC-----------HHHH
Confidence 34444444443221 2346899999999999998872211 0 2778888986 4332
Q ss_pred HHHHHhhCCCCCCCCceEEeecCCCccccc-CCCC----ceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHH
Q 017514 114 KILRKQLGSASGAAGQCFFTGVPGSFYGRL-FPRN----SVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTA 188 (370)
Q Consensus 114 ~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l-~p~~----sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~a 188 (370)
....++....+ +.+=+.++-|+|.+.+ +|+. ...++++.+++++++ |
T Consensus 102 ~~a~~~l~~~~---p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~--~----------------------- 153 (301)
T TIGR03438 102 KESAAALAADY---PQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFT--P----------------------- 153 (301)
T ss_pred HHHHHHHHhhC---CCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCC--H-----------------------
Confidence 22211111111 1233444556886543 2332 456777778888864 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCceEEEEeeccCCC
Q 017514 189 YYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQ 224 (370)
Q Consensus 189 y~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~ 224 (370)
.|...||+.-++-|+|||+|++.+-...+.
T Consensus 154 ------~e~~~~L~~i~~~L~pgG~~lig~d~~~~~ 183 (301)
T TIGR03438 154 ------EEAVAFLRRIRQLLGPGGGLLIGVDLVKDP 183 (301)
T ss_pred ------HHHHHHHHHHHHhcCCCCEEEEeccCCCCH
Confidence 234558888889999999999877655443
No 43
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.93 E-value=0.0004 Score=64.13 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=25.5
Q ss_pred CcCcccCCHHHHHHHHHhcCceEEEEEEEEeec
Q 017514 260 NIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEVN 292 (370)
Q Consensus 260 ~~P~y~~s~eE~~~~ie~~GsF~i~~le~~~~~ 292 (370)
..+.+..+.+++...++..| |++.+.+.+...
T Consensus 187 ~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~ 218 (230)
T PRK07580 187 TTRIYPHREKGIRRALAAAG-FKVVRTERISSG 218 (230)
T ss_pred CCCccccCHHHHHHHHHHCC-CceEeeeeccch
Confidence 34567789999999999999 998887766433
No 44
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.91 E-value=0.00018 Score=69.08 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=33.2
Q ss_pred CCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEE
Q 017514 144 FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLT 217 (370)
Q Consensus 144 ~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~ 217 (370)
+|.+++|+++|.+.|||++. | +...+|+.=++-|+|||.|++.
T Consensus 199 ~~~~~fD~I~crnvl~yf~~-~------------------------------~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 199 PPLGDFDLIFCRNVLIYFDE-P------------------------------TQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred CccCCCCEEEechhHHhCCH-H------------------------------HHHHHHHHHHHHhCCCeEEEEE
Confidence 46889999999999999754 2 1223566678899999999874
No 45
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.90 E-value=9e-05 Score=68.08 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=89.6
Q ss_pred HHHHHHHHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchH
Q 017514 24 VQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFN 103 (370)
Q Consensus 24 ~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFn 103 (370)
+|+.+.....|++-.....+.........+|+|+|||+|..+..+. +.+ |..+|+..|.-
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~la--------~~~-------p~~~v~gVD~s----- 73 (202)
T PRK00121 14 GQQRAIEELWPRLSPAPLDWAELFGNDAPIHLEIGFGKGEFLVEMA--------KAN-------PDINFIGIEVH----- 73 (202)
T ss_pred chhhhhcccchhhcCCCCCHHHHcCCCCCeEEEEccCCCHHHHHHH--------HHC-------CCccEEEEEec-----
Confidence 4556666666666333222211112246799999999999988665 321 44678888875
Q ss_pred HHHHhhHHHHHHHHHhhC-CCCCCCCceEEeecCCCc---ccccCCCCceeEEEeccccccccCCCCCccCCCceeeecC
Q 017514 104 TIFRSLASFQKILRKQLG-SASGAAGQCFFTGVPGSF---YGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMAS 179 (370)
Q Consensus 104 tLF~~l~~~~~~~~~~~~-~~~~~~~~~f~~~vpgSF---y~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~ 179 (370)
+.......+... ... .+-.|+.+ +. +.+.++++++|.++++++.+|... +.. +..
T Consensus 74 ------~~~i~~a~~~~~~~~~--~~v~~~~~---d~~~~l~~~~~~~~~D~V~~~~~~p~~~~-~~~----~~~----- 132 (202)
T PRK00121 74 ------EPGVGKALKKIEEEGL--TNLRLLCG---DAVEVLLDMFPDGSLDRIYLNFPDPWPKK-RHH----KRR----- 132 (202)
T ss_pred ------hHHHHHHHHHHHHcCC--CCEEEEec---CHHHHHHHHcCccccceEEEECCCCCCCc-ccc----ccc-----
Confidence 322222221111 011 02233333 44 234578899999999988888553 111 000
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCc
Q 017514 180 TSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLI 251 (370)
Q Consensus 180 ~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i 251 (370)
.+...||+.=++-|+|||.+++.... .+.+...+..|.+.|+-
T Consensus 133 ---------------~~~~~~l~~i~~~LkpgG~l~i~~~~--------------~~~~~~~~~~~~~~g~~ 175 (202)
T PRK00121 133 ---------------LVQPEFLALYARKLKPGGEIHFATDW--------------EGYAEYMLEVLSAEGGF 175 (202)
T ss_pred ---------------cCCHHHHHHHHHHcCCCCEEEEEcCC--------------HHHHHHHHHHHHhCccc
Confidence 11234777778999999999987632 23445566666666653
No 46
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.89 E-value=1e-05 Score=65.06 Aligned_cols=95 Identities=21% Similarity=0.217 Sum_probs=47.4
Q ss_pred EeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHH----HHHHHhhCCCCCCCCce
Q 017514 55 ADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQ----KILRKQLGSASGAAGQC 130 (370)
Q Consensus 55 aD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~----~~~~~~~~~~~~~~~~~ 130 (370)
+|+|||+|..+..++ +.+ |..+++..|.- +... ..+.+ .+.. ...
T Consensus 1 LdiGcG~G~~~~~l~--------~~~-------~~~~~~~~D~s-----------~~~l~~a~~~~~~-~~~~----~~~ 49 (99)
T PF08242_consen 1 LDIGCGTGRLLRALL--------EEL-------PDARYTGVDIS-----------PSMLERARERLAE-LGND----NFE 49 (99)
T ss_dssp -EESTTTS-TTTTHH--------HHC--------EEEEEEEESS-----------SSTTSTTCCCHHH-CT-------EE
T ss_pred CEeCccChHHHHHHH--------HhC-------CCCEEEEEECC-----------HHHHHHHHHHhhh-cCCc----cee
Confidence 699999999999877 432 45888888875 2221 11111 1110 122
Q ss_pred EEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017514 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 210 (370)
Q Consensus 131 f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~ 210 (370)
.+.....+.. ...+++++|+++++.+|||+ + |+..+|+.-++-|+|
T Consensus 50 ~~~~~~~~~~-~~~~~~~fD~V~~~~vl~~l---~------------------------------~~~~~l~~~~~~L~p 95 (99)
T PF08242_consen 50 RLRFDVLDLF-DYDPPESFDLVVASNVLHHL---E------------------------------DIEAVLRNIYRLLKP 95 (99)
T ss_dssp EEE--SSS----CCC----SEEEEE-TTS-----S-------------------------------HHHHHHHHTTT-TS
T ss_pred EEEeecCChh-hcccccccceehhhhhHhhh---h------------------------------hHHHHHHHHHHHcCC
Confidence 3333333332 22233799999999999998 2 223367788899999
Q ss_pred CceE
Q 017514 211 EGRM 214 (370)
Q Consensus 211 GG~l 214 (370)
||+|
T Consensus 96 gG~l 99 (99)
T PF08242_consen 96 GGIL 99 (99)
T ss_dssp S-EE
T ss_pred CCCC
Confidence 9986
No 47
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.88 E-value=0.00018 Score=74.28 Aligned_cols=102 Identities=22% Similarity=0.177 Sum_probs=63.6
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCce
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (370)
..+|+|+|||+|.+|..+. +.+ -+|+..|.- . .+...-....+.. ..-.
T Consensus 38 ~~~vLDlGcG~G~~~~~la--------~~~---------~~v~giD~s-----~------~~l~~a~~~~~~~---~~i~ 86 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELA--------KKA---------GQVIALDFI-----E------SVIKKNESINGHY---KNVK 86 (475)
T ss_pred CCEEEEeCCCcCHHHHHHH--------hhC---------CEEEEEeCC-----H------HHHHHHHHHhccC---CceE
Confidence 3589999999999998766 221 245555642 2 2111111111110 0123
Q ss_pred EEeecCCCccc--ccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017514 131 FFTGVPGSFYG--RLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (370)
Q Consensus 131 f~~~vpgSFy~--~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL 208 (370)
|+.+ ++.. --+|++++|++++..++||++. .++..+|+.-++-|
T Consensus 87 ~~~~---d~~~~~~~~~~~~fD~I~~~~~l~~l~~-------------------------------~~~~~~l~~~~r~L 132 (475)
T PLN02336 87 FMCA---DVTSPDLNISDGSVDLIFSNWLLMYLSD-------------------------------KEVENLAERMVKWL 132 (475)
T ss_pred EEEe---cccccccCCCCCCEEEEehhhhHHhCCH-------------------------------HHHHHHHHHHHHhc
Confidence 4444 4422 1257899999999999999743 23345788888999
Q ss_pred ccCceEEEE
Q 017514 209 VAEGRMVLT 217 (370)
Q Consensus 209 ~~GG~lvl~ 217 (370)
+|||+|++.
T Consensus 133 k~gG~l~~~ 141 (475)
T PLN02336 133 KVGGYIFFR 141 (475)
T ss_pred CCCeEEEEE
Confidence 999999875
No 48
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.86 E-value=0.00027 Score=66.46 Aligned_cols=198 Identities=17% Similarity=0.183 Sum_probs=112.5
Q ss_pred hhHhhhHHHHHHHHH--------hHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCC
Q 017514 17 SYASNSLVQEKVISI--------AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLP 88 (370)
Q Consensus 17 sY~~nS~~Q~~~~~~--------~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p 88 (370)
-|.+++..+...... -..+|.....++..-......+|+++|||.|...+.++ + ..+.|
T Consensus 30 ~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll--------~-----~~~n~ 96 (264)
T KOG2361|consen 30 KYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLL--------K-----TSPNN 96 (264)
T ss_pred hhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhh--------h-----cCCCC
Confidence 355555555444432 34566666666554322234499999999997766665 2 22344
Q ss_pred cceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCc--eEEeecCCCcccccCCCCceeEEEeccccccccCCCC
Q 017514 89 EFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ--CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPD 166 (370)
Q Consensus 89 ~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~--~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~ 166 (370)
.+.||+.|-. |.-.+-+++..+.+. .. .|+.=.-++=-..-++++|+|++.--+. ||-+|+
T Consensus 97 ~l~v~acDfs-----------p~Ai~~vk~~~~~~e---~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv---LSAi~p 159 (264)
T KOG2361|consen 97 RLKVYACDFS-----------PRAIELVKKSSGYDE---SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV---LSAIHP 159 (264)
T ss_pred CeEEEEcCCC-----------hHHHHHHHhccccch---hhhcccceeccchhccCCCCcCccceEEEEEE---EeccCh
Confidence 5999999975 333333332211110 11 2222222222344456677777654443 344443
Q ss_pred CccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHH
Q 017514 167 GLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMV 246 (370)
Q Consensus 167 ~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv 246 (370)
. -+..-+..-.+=|+|||.|++-=.|+.+.. .+. -+
T Consensus 160 e----------------------------k~~~a~~nl~~llKPGG~llfrDYg~~Dla-----------qlR----F~- 195 (264)
T KOG2361|consen 160 E----------------------------KMQSVIKNLRTLLKPGGSLLFRDYGRYDLA-----------QLR----FK- 195 (264)
T ss_pred H----------------------------HHHHHHHHHHHHhCCCcEEEEeecccchHH-----------HHh----cc-
Confidence 2 122235555778999999999877765431 110 00
Q ss_pred hcCCcchhhhc-cCCcCcccCCHHHHHHHHHhcCceEEEEEEEE
Q 017514 247 SEGLIEEEKVN-CFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVS 289 (370)
Q Consensus 247 ~eG~i~~e~~d-~f~~P~y~~s~eE~~~~ie~~GsF~i~~le~~ 289 (370)
++-.|++..+- .=-.+.|+.+.+|++.++.+.| |...++++.
T Consensus 196 ~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag-f~~~~~~~~ 238 (264)
T KOG2361|consen 196 KGQCISENFYVRGDGTRAYFFTEEELDELFTKAG-FEEVQLEVD 238 (264)
T ss_pred CCceeecceEEccCCceeeeccHHHHHHHHHhcc-cchhcccce
Confidence 33334433332 2236889999999999999999 887777654
No 49
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.86 E-value=0.0003 Score=66.21 Aligned_cols=104 Identities=18% Similarity=0.286 Sum_probs=65.5
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCce
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (370)
.-.+.|+|||+|..++.+. +. + =+|+..|+- +...+...+... ..
T Consensus 34 h~~a~DvG~G~Gqa~~~ia--------e~--------~-k~VIatD~s-----------~~mL~~a~k~~~-------~~ 78 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIA--------EH--------Y-KEVIATDVS-----------EAMLKVAKKHPP-------VT 78 (261)
T ss_pred cceEEEeccCCCcchHHHH--------Hh--------h-hhheeecCC-----------HHHHHHhhcCCC-------cc
Confidence 3489999999996665554 22 2 346677764 333222222111 11
Q ss_pred EEeecCCCcc----cccC-CCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 131 FFTGVPGSFY----GRLF-PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS 205 (370)
Q Consensus 131 f~~~vpgSFy----~~l~-p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra 205 (370)
| .=+|-++= ..|. +++|||++.+.-|+||. |+.+|++.-.
T Consensus 79 y-~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF----------------------------------dle~fy~~~~ 123 (261)
T KOG3010|consen 79 Y-CHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF----------------------------------DLERFYKEAY 123 (261)
T ss_pred c-ccCCccccccccccccCCCcceeeehhhhhHHhh----------------------------------chHHHHHHHH
Confidence 1 11233332 2344 69999999999999993 4556888888
Q ss_pred HhhccCceEEEEeeccCCC
Q 017514 206 EELVAEGRMVLTFLGRKSQ 224 (370)
Q Consensus 206 ~EL~~GG~lvl~~~g~~~~ 224 (370)
+-|++.|-++....=+++.
T Consensus 124 rvLRk~Gg~iavW~Y~dd~ 142 (261)
T KOG3010|consen 124 RVLRKDGGLIAVWNYNDDF 142 (261)
T ss_pred HHcCCCCCEEEEEEccCCC
Confidence 9999988777777766543
No 50
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.80 E-value=0.00088 Score=61.66 Aligned_cols=159 Identities=13% Similarity=0.191 Sum_probs=84.4
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCc
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (370)
...+|+|+|||+|..+..+. +. + ..+...|+. +.............. ...-
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~--------~~----~-----~~v~~iD~s-----------~~~~~~a~~~~~~~~-~~~~ 95 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLA--------RL----G-----ANVTGIDAS-----------EENIEVAKLHAKKDP-LLKI 95 (224)
T ss_pred CCCeEEEECCCCCHHHHHHH--------hc----C-----CeEEEEeCC-----------HHHHHHHHHHHHHcC-CCce
Confidence 46799999999998776543 11 1 347777764 222111111111000 0011
Q ss_pred eEEeecCCCcccccCC-CCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017514 130 CFFTGVPGSFYGRLFP-RNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~p-~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL 208 (370)
.|..+ ++-+-..+ ++++|++++..++|+... | ..+|+.-.+-|
T Consensus 96 ~~~~~---d~~~~~~~~~~~~D~i~~~~~l~~~~~-~--------------------------------~~~l~~~~~~L 139 (224)
T TIGR01983 96 EYRCT---SVEDLAEKGAKSFDVVTCMEVLEHVPD-P--------------------------------QAFIRACAQLL 139 (224)
T ss_pred EEEeC---CHHHhhcCCCCCccEEEehhHHHhCCC-H--------------------------------HHHHHHHHHhc
Confidence 23222 33222222 478999999999888533 1 22677777889
Q ss_pred ccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEEEE
Q 017514 209 VAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEV 288 (370)
Q Consensus 209 ~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le~ 288 (370)
+|||.+++....++.. ......+. .++. .+.+... -.....+.+.+++.+.+++.| |+|..+.-
T Consensus 140 ~~gG~l~i~~~~~~~~-------~~~~~~~~---~~~~-~~~~~~~----~~~~~~~~~~~~l~~~l~~~G-~~i~~~~~ 203 (224)
T TIGR01983 140 KPGGILFFSTINRTPK-------SYLLAIVG---AEYI-LRIVPKG----THDWEKFIKPSELTSWLESAG-LRVKDVKG 203 (224)
T ss_pred CCCcEEEEEecCCCch-------HHHHHHHh---hhhh-hhcCCCC----cCChhhcCCHHHHHHHHHHcC-Ceeeeeee
Confidence 9999988776532210 01111111 0111 0111110 001113458899999999998 99987774
Q ss_pred E
Q 017514 289 S 289 (370)
Q Consensus 289 ~ 289 (370)
+
T Consensus 204 ~ 204 (224)
T TIGR01983 204 L 204 (224)
T ss_pred E
Confidence 4
No 51
>PRK05785 hypothetical protein; Provisional
Probab=97.76 E-value=0.00063 Score=63.69 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=47.4
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCce
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (370)
.-+|+|+|||+|.++..+. +++ ..+|+--|+- +.+.+.-.+ ..-
T Consensus 52 ~~~VLDlGcGtG~~~~~l~--------~~~--------~~~v~gvD~S-----------~~Ml~~a~~---------~~~ 95 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFK--------KVF--------KYYVVALDYA-----------ENMLKMNLV---------ADD 95 (226)
T ss_pred CCeEEEEcCCCCHHHHHHH--------Hhc--------CCEEEEECCC-----------HHHHHHHHh---------ccc
Confidence 5799999999998877554 221 1477888874 333221111 112
Q ss_pred EEeecCCCcccccCCCCceeEEEeccccccccC
Q 017514 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQ 163 (370)
Q Consensus 131 f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~ 163 (370)
++. +++-.-=||++|+|+++|+++|||+.+
T Consensus 96 ~~~---~d~~~lp~~d~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 96 KVV---GSFEALPFRDKSFDVVMSSFALHASDN 125 (226)
T ss_pred eEE---echhhCCCCCCCEEEEEecChhhccCC
Confidence 333 355333358999999999999999654
No 52
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.74 E-value=0.0043 Score=60.07 Aligned_cols=71 Identities=23% Similarity=0.276 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcC-cccCCHHHHHH
Q 017514 195 RDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIP-QYTPSPAEIKS 273 (370)
Q Consensus 195 ~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P-~y~~s~eE~~~ 273 (370)
+.+..|++.-.+-|+|||+|++-..+....... ... .-.+.+.+| -+.||..++..
T Consensus 153 ~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~----------~~~-------------~~i~~yiFPgG~lPs~~~i~~ 209 (283)
T COG2230 153 ENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR----------RFP-------------DFIDKYIFPGGELPSISEILE 209 (283)
T ss_pred ccHHHHHHHHHhhcCCCceEEEEEecCCCcccc----------cch-------------HHHHHhCCCCCcCCCHHHHHH
Confidence 456669999999999999999999987764210 001 112233344 36689999999
Q ss_pred HHHhcCceEEEEEEEE
Q 017514 274 EVIKEGSFTIDHLEVS 289 (370)
Q Consensus 274 ~ie~~GsF~i~~le~~ 289 (370)
.+++.| |.+...+.+
T Consensus 210 ~~~~~~-~~v~~~~~~ 224 (283)
T COG2230 210 LASEAG-FVVLDVESL 224 (283)
T ss_pred HHHhcC-cEEehHhhh
Confidence 999998 766544433
No 53
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.69 E-value=0.00028 Score=63.89 Aligned_cols=128 Identities=20% Similarity=0.214 Sum_probs=73.1
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHH---HhhCCCCCCC
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILR---KQLGSASGAA 127 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~---~~~~~~~~~~ 127 (370)
..+|+|+|||+|..++.+. ... |..+|+.-|.- +...+... ++.+.+
T Consensus 43 ~~~vLDiGcGtG~~s~~la--------~~~-------~~~~V~~iD~s-----------~~~~~~a~~~~~~~~~~---- 92 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLA--------IAR-------PELKLTLLESN-----------HKKVAFLREVKAELGLN---- 92 (181)
T ss_pred CCeEEEecCCCCccHHHHH--------HHC-------CCCeEEEEeCc-----------HHHHHHHHHHHHHhCCC----
Confidence 4799999999999888664 211 34678888875 22211111 111211
Q ss_pred CceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017514 128 GQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE 207 (370)
Q Consensus 128 ~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~E 207 (370)
+-.| +.++. ..+.+.+++|+++|.. +|++ | .+++.-.+-
T Consensus 93 ~i~~---i~~d~-~~~~~~~~fD~I~s~~-~~~~---~---------------------------------~~~~~~~~~ 131 (181)
T TIGR00138 93 NVEI---VNGRA-EDFQHEEQFDVITSRA-LASL---N---------------------------------VLLELTLNL 131 (181)
T ss_pred CeEE---Eecch-hhccccCCccEEEehh-hhCH---H---------------------------------HHHHHHHHh
Confidence 1123 33355 3355678999999864 3321 1 133333566
Q ss_pred hccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcC
Q 017514 208 LVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIP 262 (370)
Q Consensus 208 L~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P 262 (370)
|+|||++++.. |... ..-+..+...+..+|+ .+.+.++++.|
T Consensus 132 LkpgG~lvi~~-~~~~-----------~~~~~~~~e~~~~~~~-~~~~~~~~~~~ 173 (181)
T TIGR00138 132 LKVGGYFLAYK-GKKY-----------LDEIEEAKRKCQVLGV-EPLEVPPLTGP 173 (181)
T ss_pred cCCCCEEEEEc-CCCc-----------HHHHHHHHHhhhhcCc-eEeeccccCCC
Confidence 99999999874 2111 1234444466666774 45557788887
No 54
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.67 E-value=0.0004 Score=65.87 Aligned_cols=173 Identities=14% Similarity=0.212 Sum_probs=99.5
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhh-CCCCC-C
Q 017514 49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASG-A 126 (370)
Q Consensus 49 ~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~-~~~~~-~ 126 (370)
.+.++++|++||+|-.+++++..+-..- + . -+-+|...|.- |+....-+++. ...+. +
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~-------~-~-~~~~V~v~Din-----------p~mL~vgkqRa~~~~l~~~ 158 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQF-------G-D-RESKVTVLDIN-----------PHMLAVGKQRAKKRPLKAS 158 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhcccc-------C-C-CCceEEEEeCC-----------HHHHHHHHHHHhhcCCCcC
Confidence 3569999999999999998873322221 1 1 23677778875 55443333222 11110 0
Q ss_pred CCceEEeecCCCccccc-CCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 127 AGQCFFTGVPGSFYGRL-FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS 205 (370)
Q Consensus 127 ~~~~f~~~vpgSFy~~l-~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra 205 (370)
.+-.+ +.|+- +.| ||++|.|...+++.+--..+++. .+.+||
T Consensus 159 ~~~~w---~~~dA-E~LpFdd~s~D~yTiafGIRN~th~~k-----------------~l~EAY---------------- 201 (296)
T KOG1540|consen 159 SRVEW---VEGDA-EDLPFDDDSFDAYTIAFGIRNVTHIQK-----------------ALREAY---------------- 201 (296)
T ss_pred CceEE---EeCCc-ccCCCCCCcceeEEEecceecCCCHHH-----------------HHHHHH----------------
Confidence 01233 33355 444 69999999999999876444332 344555
Q ss_pred HhhccCceEEEEeeccCCCCCCCch-hhhHH---HHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCce
Q 017514 206 EELVAEGRMVLTFLGRKSQDPSSKE-CCYIW---ELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSF 281 (370)
Q Consensus 206 ~EL~~GG~lvl~~~g~~~~~~~~~~-~~~~~---~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF 281 (370)
+-|||||++.+.-+..-+..+...- ..+.+ -.+.+.+....+.+.+=-|-+. -+|+.||+...|+++| |
T Consensus 202 RVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~------rfp~qe~f~~miedaG-F 274 (296)
T KOG1540|consen 202 RVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIR------RFPPQEEFASMIEDAG-F 274 (296)
T ss_pred HhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhh------cCCCHHHHHHHHHHcC-C
Confidence 6799999999888877664221100 01112 2333344333333321111111 2688999999999999 7
Q ss_pred EEEE
Q 017514 282 TIDH 285 (370)
Q Consensus 282 ~i~~ 285 (370)
....
T Consensus 275 ~~~~ 278 (296)
T KOG1540|consen 275 SSVN 278 (296)
T ss_pred cccc
Confidence 6654
No 55
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.65 E-value=0.00059 Score=65.40 Aligned_cols=76 Identities=22% Similarity=0.262 Sum_probs=43.6
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCc
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (370)
...+|+|+|||+|..+..+. +... .....+++-.|+- +.......+. .. .-
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~--------~~~~----~~~~~~v~giD~s-----------~~~l~~A~~~-~~-----~~ 135 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALA--------DALP----EITTMQLFGLDIS-----------KVAIKYAAKR-YP-----QV 135 (272)
T ss_pred CCCeEEEECCcCCHHHHHHH--------Hhcc----cccCCeEEEECCC-----------HHHHHHHHHh-CC-----CC
Confidence 34689999999999887665 2210 0012578888874 2222211111 11 22
Q ss_pred eEEeecCCCcccccCCCCceeEEEeccc
Q 017514 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYS 157 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~p~~sv~~~~S~~a 157 (370)
.|..+ +..+--++++|+|+++|..+
T Consensus 136 ~~~~~---d~~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 136 TFCVA---SSHRLPFADQSLDAIIRIYA 160 (272)
T ss_pred eEEEe---ecccCCCcCCceeEEEEecC
Confidence 44444 44333367899999998653
No 56
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.62 E-value=0.00023 Score=66.58 Aligned_cols=93 Identities=27% Similarity=0.462 Sum_probs=67.1
Q ss_pred CCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeccCC
Q 017514 144 FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKS 223 (370)
Q Consensus 144 ~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~ 223 (370)
|-+||+|+++|+.++||..++|.. .......|||.|.++-.++|-+.
T Consensus 133 f~ens~DLiisSlslHW~NdLPg~---------------------------------m~~ck~~lKPDg~FiasmlggdT 179 (325)
T KOG2940|consen 133 FKENSVDLIISSLSLHWTNDLPGS---------------------------------MIQCKLALKPDGLFIASMLGGDT 179 (325)
T ss_pred ccccchhhhhhhhhhhhhccCchH---------------------------------HHHHHHhcCCCccchhHHhcccc
Confidence 578999999999999999999952 22335789999999999998552
Q ss_pred CCCCCchhhhHHHH-HHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEEE
Q 017514 224 QDPSSKECCYIWEL-LATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLE 287 (370)
Q Consensus 224 ~~~~~~~~~~~~~~-l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le 287 (370)
++++ .+--|.+|..||=||+- .-|+ .-..++-..+...| |....+.
T Consensus 180 ----------LyELR~slqLAelER~GGiSph-----iSPf--~qvrDiG~LL~rAG-F~m~tvD 226 (325)
T KOG2940|consen 180 ----------LYELRCSLQLAELEREGGISPH-----ISPF--TQVRDIGNLLTRAG-FSMLTVD 226 (325)
T ss_pred ----------HHHHHHHhhHHHHHhccCCCCC-----cChh--hhhhhhhhHHhhcC-cccceec
Confidence 3442 45667888888876653 2232 24566777788888 7654443
No 57
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.58 E-value=0.00071 Score=62.88 Aligned_cols=95 Identities=12% Similarity=0.191 Sum_probs=57.2
Q ss_pred CCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeccCCC
Q 017514 145 PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQ 224 (370)
Q Consensus 145 p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~ 224 (370)
+++.+|+++++..+++.... ..+|+.-.+-|+|||+|++...++...
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~~---------------------------------~~~l~~~~~~L~~gG~l~v~~~~~~~~ 157 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPDP---------------------------------ASFVRACAKLVKPGGLVFFSTLNRNLK 157 (233)
T ss_pred cCCCccEEEEhhHhhccCCH---------------------------------HHHHHHHHHHcCCCcEEEEEecCCChH
Confidence 56789999999888874321 125677788899999999887653211
Q ss_pred CCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEEEE
Q 017514 225 DPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEV 288 (370)
Q Consensus 225 ~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le~ 288 (370)
........ .+.+..++ .. .......+.+++|+.+.+++.| |++.+..-
T Consensus 158 -------~~~~~~~~---~~~~~~~~-~~----~~~~~~~~~~~~~~~~~l~~~G-f~~v~~~~ 205 (233)
T PRK05134 158 -------SYLLAIVG---AEYVLRML-PK----GTHDYKKFIKPSELAAWLRQAG-LEVQDITG 205 (233)
T ss_pred -------HHHHHHhh---HHHHhhhc-Cc----ccCchhhcCCHHHHHHHHHHCC-CeEeeeee
Confidence 01111111 11111111 10 0111234678999999999999 98877653
No 58
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=97.56 E-value=0.00029 Score=70.09 Aligned_cols=107 Identities=16% Similarity=0.222 Sum_probs=66.2
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCceE
Q 017514 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF 131 (370)
Q Consensus 52 ~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f 131 (370)
-+|+|+|||+|..++.+. +++ |..+|+..|.. - ..+..-..... ..+ . ...+
T Consensus 198 g~VLDlGCG~G~ls~~la--------~~~-------p~~~v~~vDis---~----~Al~~A~~nl~-~n~--l---~~~~ 249 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLA--------RHS-------PKIRLTLSDVS---A----AALESSRATLA-ANG--L---EGEV 249 (342)
T ss_pred CeEEEeccCcCHHHHHHH--------HhC-------CCCEEEEEECC---H----HHHHHHHHHHH-HcC--C---CCEE
Confidence 489999999998877555 331 55789999985 1 11111111111 111 1 1122
Q ss_pred EeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 017514 132 FTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAE 211 (370)
Q Consensus 132 ~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~G 211 (370)
++++.+.. .++++|+++|+-.+||.-.. . ..+...|++.=++-|+||
T Consensus 250 ---~~~D~~~~--~~~~fDlIvsNPPFH~g~~~----------------~------------~~~~~~~i~~a~~~Lkpg 296 (342)
T PRK09489 250 ---FASNVFSD--IKGRFDMIISNPPFHDGIQT----------------S------------LDAAQTLIRGAVRHLNSG 296 (342)
T ss_pred ---EEcccccc--cCCCccEEEECCCccCCccc----------------c------------HHHHHHHHHHHHHhcCcC
Confidence 23455543 36789999999999973210 0 124456888888999999
Q ss_pred ceEEEEee
Q 017514 212 GRMVLTFL 219 (370)
Q Consensus 212 G~lvl~~~ 219 (370)
|.|+++..
T Consensus 297 G~L~iVan 304 (342)
T PRK09489 297 GELRIVAN 304 (342)
T ss_pred CEEEEEEe
Confidence 99998754
No 59
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.53 E-value=0.00024 Score=57.43 Aligned_cols=98 Identities=22% Similarity=0.291 Sum_probs=59.3
Q ss_pred EEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhC-CCCCCCCceEE
Q 017514 54 IADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAAGQCFF 132 (370)
Q Consensus 54 IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~-~~~~~~~~~f~ 132 (370)
|+|+|||+|.++..+. +.+ ...|+.+++.-|+- +...+..++... ..+ ..-|+
T Consensus 1 ILDlgcG~G~~~~~l~--------~~~----~~~~~~~~~gvD~s-----------~~~l~~~~~~~~~~~~---~~~~~ 54 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALA--------RRF----DAGPSSRVIGVDIS-----------PEMLELAKKRFSEDGP---KVRFV 54 (101)
T ss_dssp -EEET-TTSHHHHHHH--------HHS---------SEEEEEES------------HHHHHHHHHHSHHTTT---TSEEE
T ss_pred CEEeecCCcHHHHHHH--------HHh----hhcccceEEEEECC-----------HHHHHHHHHhchhcCC---ceEEE
Confidence 7999999999988777 222 11145888999985 433332222211 111 23455
Q ss_pred eecCCCcccccC-CCCceeEEEeccc-cccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017514 133 TGVPGSFYGRLF-PRNSVHLFHSSYS-LQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 210 (370)
Q Consensus 133 ~~vpgSFy~~l~-p~~sv~~~~S~~a-lhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~ 210 (370)
.+ ++ ..+- +.+++|+++++.+ +|++++ +++..+|+.-++=|+|
T Consensus 55 ~~---D~-~~l~~~~~~~D~v~~~~~~~~~~~~-------------------------------~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 55 QA---DA-RDLPFSDGKFDLVVCSGLSLHHLSP-------------------------------EELEALLRRIARLLRP 99 (101)
T ss_dssp ES---CT-TCHHHHSSSEEEEEE-TTGGGGSSH-------------------------------HHHHHHHHHHHHTEEE
T ss_pred EC---CH-hHCcccCCCeeEEEEcCCccCCCCH-------------------------------HHHHHHHHHHHHHhCC
Confidence 55 55 3333 6779999999766 998654 4566688888999999
Q ss_pred Cc
Q 017514 211 EG 212 (370)
Q Consensus 211 GG 212 (370)
||
T Consensus 100 gG 101 (101)
T PF13649_consen 100 GG 101 (101)
T ss_dssp EE
T ss_pred CC
Confidence 98
No 60
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.52 E-value=0.0011 Score=64.66 Aligned_cols=147 Identities=22% Similarity=0.262 Sum_probs=100.1
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCce
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (370)
--+|+|+||+.|.-++.+. .+ | | -.|+--| |+=.|..=|+.+..+. +.+ ..+
T Consensus 116 gk~VLDIGC~nGY~~frM~--------~~----G---A-~~ViGiD-P~~lf~~QF~~i~~~l-------g~~----~~~ 167 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRML--------GR----G---A-KSVIGID-PSPLFYLQFEAIKHFL-------GQD----PPV 167 (315)
T ss_pred CCEEEEecCCCcHHHHHHh--------hc----C---C-CEEEEEC-CChHHHHHHHHHHHHh-------CCC----ccE
Confidence 4699999999999998776 22 2 3 3455555 5556666666665431 222 345
Q ss_pred EEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017514 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 210 (370)
Q Consensus 131 f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~ 210 (370)
|.. |-.. +.|.+.+++|.+||.--|=-++. | -. .|+.-..-|+|
T Consensus 168 ~~l--plgv-E~Lp~~~~FDtVF~MGVLYHrr~-P-----------------l~---------------~L~~Lk~~L~~ 211 (315)
T PF08003_consen 168 FEL--PLGV-EDLPNLGAFDTVFSMGVLYHRRS-P-----------------LD---------------HLKQLKDSLRP 211 (315)
T ss_pred EEc--Ccch-hhccccCCcCEEEEeeehhccCC-H-----------------HH---------------HHHHHHHhhCC
Confidence 544 2223 56666789999999866655443 3 22 35555678999
Q ss_pred CceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEE
Q 017514 211 EGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTI 283 (370)
Q Consensus 211 GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i 283 (370)
||.|||..+..+..... -++.++.+..|+-=++.||..-++..+++.| |+-
T Consensus 212 gGeLvLETlvi~g~~~~---------------------~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~~ 262 (315)
T PF08003_consen 212 GGELVLETLVIDGDENT---------------------VLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FKD 262 (315)
T ss_pred CCEEEEEEeeecCCCce---------------------EEccCCcccCCCceEEeCCHHHHHHHHHHcC-Cce
Confidence 99999999876644211 2356666788888889999999999999999 753
No 61
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.51 E-value=0.00058 Score=68.84 Aligned_cols=111 Identities=15% Similarity=0.110 Sum_probs=65.0
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCceE
Q 017514 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF 131 (370)
Q Consensus 52 ~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f 131 (370)
-+|+|+|||+|..++.+. +++ |..+|+..|.. ...+..-..-.. ..+.. +..+-.|
T Consensus 230 ~~VLDLGCGtGvi~i~la--------~~~-------P~~~V~~vD~S-------~~Av~~A~~N~~-~n~~~-~~~~v~~ 285 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLL--------DKN-------PQAKVVFVDES-------PMAVASSRLNVE-TNMPE-ALDRCEF 285 (378)
T ss_pred CeEEEEeccccHHHHHHH--------HhC-------CCCEEEEEECC-------HHHHHHHHHHHH-HcCcc-cCceEEE
Confidence 489999999998877555 332 67899999985 111111111111 11110 0001123
Q ss_pred EeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 017514 132 FTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAE 211 (370)
Q Consensus 132 ~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~G 211 (370)
. .++.+..+ ++.++|+++|+--+|+.-.++. .+ ...+++.=.+-|+||
T Consensus 286 ~---~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~-----------------~i-----------a~~l~~~a~~~LkpG 333 (378)
T PRK15001 286 M---INNALSGV-EPFRFNAVLCNPPFHQQHALTD-----------------NV-----------AWEMFHHARRCLKIN 333 (378)
T ss_pred E---EccccccC-CCCCEEEEEECcCcccCccCCH-----------------HH-----------HHHHHHHHHHhcccC
Confidence 2 33555544 5678999999988887433221 11 123555556789999
Q ss_pred ceEEEEe
Q 017514 212 GRMVLTF 218 (370)
Q Consensus 212 G~lvl~~ 218 (370)
|.|+++.
T Consensus 334 G~L~iV~ 340 (378)
T PRK15001 334 GELYIVA 340 (378)
T ss_pred CEEEEEE
Confidence 9999985
No 62
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.47 E-value=0.0069 Score=56.31 Aligned_cols=145 Identities=18% Similarity=0.187 Sum_probs=85.0
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCC------
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSAS------ 124 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~------ 124 (370)
.-+|+|+|||.|+|++.+. ++ | .+|+--|+. +.-.+...++.+...
T Consensus 35 ~~rvLd~GCG~G~da~~LA--------~~----G-----~~V~gvD~S-----------~~Ai~~~~~~~~~~~~~~~~~ 86 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLA--------EQ----G-----HRVLGVELS-----------EIAVEQFFAENGLTPTVTQQG 86 (213)
T ss_pred CCeEEEeCCCchhHHHHHH--------hC----C-----CeEEEEeCC-----------HHHHHHHHHHcCCCcceeccc
Confidence 4699999999999999877 32 2 677777775 222222111111100
Q ss_pred -----CCCCceEEeecCCCcccccC-CCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHH
Q 017514 125 -----GAAGQCFFTGVPGSFYGRLF-PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFS 198 (370)
Q Consensus 125 -----~~~~~~f~~~vpgSFy~~l~-p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~ 198 (370)
...+--|..+ +|++--. +...+|.++-..++| .+|+ .+..
T Consensus 87 ~~~~~~~~~v~~~~~---D~~~~~~~~~~~fD~i~D~~~~~---~l~~----------------------------~~R~ 132 (213)
T TIGR03840 87 EFTRYRAGNIEIFCG---DFFALTAADLGPVDAVYDRAALI---ALPE----------------------------EMRQ 132 (213)
T ss_pred cceeeecCceEEEEc---cCCCCCcccCCCcCEEEechhhc---cCCH----------------------------HHHH
Confidence 0001122222 5543211 124578888877776 3443 2334
Q ss_pred HHHHHHHHhhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhc
Q 017514 199 LFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKE 278 (370)
Q Consensus 199 ~fL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~ 278 (370)
.+++.-.+-|+|||++++..+..+.... .-|-|.-+++|+++.+..
T Consensus 133 ~~~~~l~~lLkpgG~~ll~~~~~~~~~~---------------------------------~gpp~~~~~~eL~~~f~~- 178 (213)
T TIGR03840 133 RYAAHLLALLPPGARQLLITLDYDQSEM---------------------------------AGPPFSVSPAEVEALYGG- 178 (213)
T ss_pred HHHHHHHHHcCCCCeEEEEEEEcCCCCC---------------------------------CCcCCCCCHHHHHHHhcC-
Confidence 4677788999999987777765432210 114478899999998863
Q ss_pred CceEEEEEEEEeec
Q 017514 279 GSFTIDHLEVSEVN 292 (370)
Q Consensus 279 GsF~i~~le~~~~~ 292 (370)
.|+|+.++-.+.+
T Consensus 179 -~~~i~~~~~~~~~ 191 (213)
T TIGR03840 179 -HYEIELLESRDVL 191 (213)
T ss_pred -CceEEEEeecccc
Confidence 3888877765533
No 63
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.46 E-value=0.00079 Score=62.72 Aligned_cols=137 Identities=22% Similarity=0.252 Sum_probs=84.4
Q ss_pred chhHhhhHH---HHHHHHHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceE
Q 017514 16 TSYASNSLV---QEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQV 92 (370)
Q Consensus 16 ~sY~~nS~~---Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v 92 (370)
.-|.+||.+ |..+.+.++.++ ... .+++--|+|+|||+|--+-.+- .+.-++
T Consensus 21 ~kYt~nsri~~IQ~em~eRaLELL-------alp-~~~~~~iLDIGCGsGLSg~vL~-----------------~~Gh~w 75 (270)
T KOG1541|consen 21 PKYTQNSRIVLIQAEMAERALELL-------ALP-GPKSGLILDIGCGSGLSGSVLS-----------------DSGHQW 75 (270)
T ss_pred hhccccceeeeehHHHHHHHHHHh-------hCC-CCCCcEEEEeccCCCcchheec-----------------cCCceE
Confidence 568889876 555554444433 221 3468899999999996543221 123667
Q ss_pred EeCCCCCCchHHHHHhhHHHHHHHH-HhhCCCCCCCCceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCC
Q 017514 93 FLNDLPGNDFNTIFRSLASFQKILR-KQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESN 171 (370)
Q Consensus 93 ~~nDlp~NDFntLF~~l~~~~~~~~-~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~n 171 (370)
+--|.. |++.+--. .+...++ -.--+|- +==|+++++|-++|-.|+|||=..-+...
T Consensus 76 iGvDiS-----------psML~~a~~~e~egdl----il~DMG~-----GlpfrpGtFDg~ISISAvQWLcnA~~s~~-- 133 (270)
T KOG1541|consen 76 IGVDIS-----------PSMLEQAVERELEGDL----ILCDMGE-----GLPFRPGTFDGVISISAVQWLCNADKSLH-- 133 (270)
T ss_pred EeecCC-----------HHHHHHHHHhhhhcCe----eeeecCC-----CCCCCCCccceEEEeeeeeeecccCcccc--
Confidence 777775 54433221 2211111 0111221 12259999999999999999765432111
Q ss_pred CceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEee
Q 017514 172 KGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFL 219 (370)
Q Consensus 172 k~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~ 219 (370)
.+ ++.+.+|+..-..-|++|++-|+.+-
T Consensus 134 -----------~P---------~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 134 -----------VP---------KKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred -----------Ch---------HHHHHHHhhhhhhhhccCceeEEEec
Confidence 11 26677899999999999999999985
No 64
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.46 E-value=0.002 Score=59.42 Aligned_cols=105 Identities=19% Similarity=0.283 Sum_probs=61.2
Q ss_pred CCchhHhhhHHHHHHHHHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEE
Q 017514 14 GGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVF 93 (370)
Q Consensus 14 G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~ 93 (370)
|.. |-+....+.. ......++.+.+..+ +..-+|+|+|||+|.++..+. +. .|..+++
T Consensus 14 g~~-~~~rn~~~~~-~~~~~~~~~~~l~~~-----~~~~~VLDiGCG~G~~~~~L~--------~~-------~~~~~v~ 71 (204)
T TIGR03587 14 GKE-YIDRNSRQSL-VAAKLAMFARALNRL-----PKIASILELGANIGMNLAALK--------RL-------LPFKHIY 71 (204)
T ss_pred cch-hhhccccHHH-HHHHHHHHHHHHHhc-----CCCCcEEEEecCCCHHHHHHH--------Hh-------CCCCeEE
Confidence 544 4444433322 333455566665433 234689999999998877554 22 1336777
Q ss_pred eCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCceEEeecCCCcccccCCCCceeEEEeccccccc
Q 017514 94 LNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWL 161 (370)
Q Consensus 94 ~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWl 161 (370)
.-|+- +......++... ...+.. ++..+ -+|++++|++++..+||++
T Consensus 72 giDiS-----------~~~l~~A~~~~~------~~~~~~---~d~~~-~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 72 GVEIN-----------EYAVEKAKAYLP------NINIIQ---GSLFD-PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred EEECC-----------HHHHHHHHhhCC------CCcEEE---eeccC-CCCCCCEEEEEECChhhhC
Confidence 77875 333222222111 112333 35555 5789999999999999876
No 65
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.44 E-value=0.00061 Score=56.13 Aligned_cols=21 Identities=29% Similarity=0.361 Sum_probs=18.3
Q ss_pred HHHHHHHHhhccCceEEEEee
Q 017514 199 LFLKCRSEELVAEGRMVLTFL 219 (370)
Q Consensus 199 ~fL~~Ra~EL~~GG~lvl~~~ 219 (370)
.+++.-.+.|+|||.+++.+.
T Consensus 103 ~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 103 EILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred HHHHHHHHHcCCCCEEEEEec
Confidence 578888999999999999863
No 66
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.44 E-value=0.0075 Score=59.46 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=23.0
Q ss_pred cccCCHHHHHHHHHhcCceEEEEEEEEe
Q 017514 263 QYTPSPAEIKSEVIKEGSFTIDHLEVSE 290 (370)
Q Consensus 263 ~y~~s~eE~~~~ie~~GsF~i~~le~~~ 290 (370)
.|+.+.+|++..+++.| |+|.+.+...
T Consensus 275 ~y~~s~eel~~lL~~AG-f~v~~~~~~~ 301 (315)
T PLN02585 275 AYLHAEADVERALKKAG-WKVARREMTA 301 (315)
T ss_pred eeeCCHHHHHHHHHHCC-CEEEEEEEee
Confidence 46779999999999999 9998777654
No 67
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.44 E-value=0.0018 Score=59.04 Aligned_cols=112 Identities=17% Similarity=0.215 Sum_probs=66.8
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhh-CCCCCCCCc
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ 129 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~ 129 (370)
.-+|+|+|||+|..++.+. +++ |..+|+.-|+- +.......+.. ..+. .+
T Consensus 17 ~~~ilDiGcG~G~~~~~la--------~~~-------p~~~v~gvD~~-----------~~~l~~a~~~~~~~~l---~n 67 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMA--------KQN-------PDKNFLGIEIH-----------TPIVLAANNKANKLGL---KN 67 (194)
T ss_pred CceEEEeCCCccHHHHHHH--------HhC-------CCCCEEEEEee-----------HHHHHHHHHHHHHhCC---CC
Confidence 3589999999999887666 321 55778888874 22211111110 1111 23
Q ss_pred eEEeecCCCcc---cccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 130 CFFTGVPGSFY---GRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 206 (370)
Q Consensus 130 ~f~~~vpgSFy---~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~ 206 (370)
+- -+-++.. ..++|++++|.++.++..+|..+ +. .|..+. ...||+.=++
T Consensus 68 i~--~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~-~h----~~~r~~--------------------~~~~l~~~~r 120 (194)
T TIGR00091 68 LH--VLCGDANELLDKFFPDGSLSKVFLNFPDPWPKK-RH----NKRRIT--------------------QPHFLKEYAN 120 (194)
T ss_pred EE--EEccCHHHHHHhhCCCCceeEEEEECCCcCCCC-Cc----cccccC--------------------CHHHHHHHHH
Confidence 22 1333543 34467889999999999999432 11 011110 1237777789
Q ss_pred hhccCceEEEEe
Q 017514 207 ELVAEGRMVLTF 218 (370)
Q Consensus 207 EL~~GG~lvl~~ 218 (370)
-|+|||.+++..
T Consensus 121 ~LkpgG~l~~~t 132 (194)
T TIGR00091 121 VLKKGGVIHFKT 132 (194)
T ss_pred HhCCCCEEEEEe
Confidence 999999998876
No 68
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.43 E-value=0.0014 Score=60.59 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=67.1
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCce
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (370)
.-+|+|+|||+|..|..++ ++. + +.-+|+.-|+-. .+ .++ +-.
T Consensus 52 ~~~VLDlG~GtG~~t~~l~--------~~~---~---~~~~V~aVDi~~--~~----~~~-----------------~v~ 94 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAV--------TQI---G---DKGRVIACDILP--MD----PIV-----------------GVD 94 (209)
T ss_pred CCEEEEEcccCCHHHHHHH--------HHc---C---CCceEEEEeccc--cc----CCC-----------------CcE
Confidence 4589999999999877666 321 1 235677777632 10 000 113
Q ss_pred EEeecCCCcccc--------cCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 017514 131 FFTGVPGSFYGR--------LFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLK 202 (370)
Q Consensus 131 f~~~vpgSFy~~--------l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~ 202 (370)
|+.| ++... -++++++|+++|..+.||... |. .+ . ..+ .......|+
T Consensus 95 ~i~~---D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~d-------------~-----~~~-~~~~~~~L~ 149 (209)
T PRK11188 95 FLQG---DFRDELVLKALLERVGDSKVQVVMSDMAPNMSGT-PA--VD-------------I-----PRA-MYLVELALD 149 (209)
T ss_pred EEec---CCCChHHHHHHHHHhCCCCCCEEecCCCCccCCC-hH--HH-------------H-----HHH-HHHHHHHHH
Confidence 3333 66542 257889999999999999432 21 00 0 000 111346788
Q ss_pred HHHHhhccCceEEEEeecc
Q 017514 203 CRSEELVAEGRMVLTFLGR 221 (370)
Q Consensus 203 ~Ra~EL~~GG~lvl~~~g~ 221 (370)
.=.+-|+|||.|++..+..
T Consensus 150 ~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 150 MCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred HHHHHcCCCCEEEEEEecC
Confidence 8889999999999976543
No 69
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.40 E-value=0.0013 Score=58.85 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=68.5
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhC-CCCCCCCc
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAAGQ 129 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~-~~~~~~~~ 129 (370)
.-+|+|+|||+|..++.+. +. + + +|+..|+- +.......+... .+. ..
T Consensus 20 ~~~vLdlG~G~G~~~~~l~--------~~----~---~--~v~~vD~s-----------~~~~~~a~~~~~~~~~---~~ 68 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLK--------GK----G---K--CILTTDIN-----------PFAVKELRENAKLNNV---GL 68 (179)
T ss_pred CCeEEEeCCChhHHHHHHH--------hc----C---C--EEEEEECC-----------HHHHHHHHHHHHHcCC---ce
Confidence 3579999999999877655 22 1 2 78888875 433332222111 111 11
Q ss_pred eEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017514 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~ 209 (370)
.+ +.+++++. +.+++|+++|+..+|.....+.. ++..++-.. ..+ .-...+..||+.=.+-|+
T Consensus 69 ~~---~~~d~~~~--~~~~fD~Vi~n~p~~~~~~~~~~--~~~~~~~~~-~~~---------~~~~~~~~~l~~~~~~Lk 131 (179)
T TIGR00537 69 DV---VMTDLFKG--VRGKFDVILFNPPYLPLEDDLRR--GDWLDVAID-GGK---------DGRKVIDRFLDELPEILK 131 (179)
T ss_pred EE---EEcccccc--cCCcccEEEECCCCCCCcchhcc--cchhhhhhh-cCC---------chHHHHHHHHHhHHHhhC
Confidence 22 33466553 34599999999888765432210 000000000 000 001224568888889999
Q ss_pred cCceEEEEeecc
Q 017514 210 AEGRMVLTFLGR 221 (370)
Q Consensus 210 ~GG~lvl~~~g~ 221 (370)
|||++++...+.
T Consensus 132 ~gG~~~~~~~~~ 143 (179)
T TIGR00537 132 EGGRVQLIQSSL 143 (179)
T ss_pred CCCEEEEEEecc
Confidence 999999987543
No 70
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.38 E-value=0.00095 Score=61.25 Aligned_cols=106 Identities=21% Similarity=0.289 Sum_probs=60.9
Q ss_pred CCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCC
Q 017514 48 SPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAA 127 (370)
Q Consensus 48 ~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~ 127 (370)
.+..-+++|+|||.|..|..+. .+| -.+.-.|.. +.-...-.+......
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA--------~rC---------d~LlavDis-----------~~Al~~Ar~Rl~~~~--- 89 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLA--------PRC---------DRLLAVDIS-----------PRALARARERLAGLP--- 89 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHG--------GGE---------EEEEEEES------------HHHHHHHHHHTTT-S---
T ss_pred ccccceeEecCCCccHHHHHHH--------Hhh---------CceEEEeCC-----------HHHHHHHHHhcCCCC---
Confidence 3567889999999999998776 333 233344442 111111111111100
Q ss_pred CceEEee-cCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 128 GQCFFTG-VPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 206 (370)
Q Consensus 128 ~~~f~~~-vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~ 206 (370)
+-.|..+ +| +..|++++|+++-+-.+++|+.. .|+..++..-.+
T Consensus 90 ~V~~~~~dvp-----~~~P~~~FDLIV~SEVlYYL~~~------------------------------~~L~~~l~~l~~ 134 (201)
T PF05401_consen 90 HVEWIQADVP-----EFWPEGRFDLIVLSEVLYYLDDA------------------------------EDLRAALDRLVA 134 (201)
T ss_dssp SEEEEES-TT-----T---SS-EEEEEEES-GGGSSSH------------------------------HHHHHHHHHHHH
T ss_pred CeEEEECcCC-----CCCCCCCeeEEEEehHhHcCCCH------------------------------HHHHHHHHHHHH
Confidence 1122222 44 23589999999999999998752 356667888889
Q ss_pred hhccCceEEEEee
Q 017514 207 ELVAEGRMVLTFL 219 (370)
Q Consensus 207 EL~~GG~lvl~~~ 219 (370)
-|.|||.||+.-.
T Consensus 135 ~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 135 ALAPGGHLVFGHA 147 (201)
T ss_dssp TEEEEEEEEEEEE
T ss_pred HhCCCCEEEEEEe
Confidence 9999999999654
No 71
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.35 E-value=0.00099 Score=63.47 Aligned_cols=77 Identities=25% Similarity=0.337 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHH
Q 017514 195 RDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSE 274 (370)
Q Consensus 195 ~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ 274 (370)
+|...||.+-.+-|+|||+++++..-|.-.-... .+ .+.+.....|-.|.- .+--+.+++|+..+
T Consensus 172 ~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~----~i--~~~E~vl~ivp~Gth---------~~ekfi~p~e~~~~ 236 (282)
T KOG1270|consen 172 KDPQEFLNCLSALLKPNGRLFITTINRTILSFAG----TI--FLAEIVLRIVPKGTH---------TWEKFINPEELTSI 236 (282)
T ss_pred hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhc----cc--cHHHHHHHhcCCCCc---------CHHHcCCHHHHHHH
Confidence 4666799999999999999999998664221000 01 223333336666643 34457889999999
Q ss_pred HHhcCceEEEEEE
Q 017514 275 VIKEGSFTIDHLE 287 (370)
Q Consensus 275 ie~~GsF~i~~le 287 (370)
++.++ +.++.+.
T Consensus 237 l~~~~-~~v~~v~ 248 (282)
T KOG1270|consen 237 LNANG-AQVNDVV 248 (282)
T ss_pred HHhcC-cchhhhh
Confidence 99987 6665554
No 72
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.32 E-value=0.016 Score=54.16 Aligned_cols=160 Identities=19% Similarity=0.247 Sum_probs=88.4
Q ss_pred hHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHH
Q 017514 32 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLAS 111 (370)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~ 111 (370)
.-|.|.+.+..+.. +..-||+|.|||.|+|++.+. ++ | .+|+--|+. +.
T Consensus 22 p~~~L~~~~~~~~~---~~~~rvL~~gCG~G~da~~LA--------~~----G-----~~V~avD~s-----------~~ 70 (218)
T PRK13255 22 VNPLLQKYWPALAL---PAGSRVLVPLCGKSLDMLWLA--------EQ----G-----HEVLGVELS-----------EL 70 (218)
T ss_pred CCHHHHHHHHhhCC---CCCCeEEEeCCCChHhHHHHH--------hC----C-----CeEEEEccC-----------HH
Confidence 44555555543322 234699999999999999877 22 2 667777765 22
Q ss_pred HHHHHHHhhCCCC-----C------CCCceEEeecCCCcccccC-CCCceeEEEeccccccccCCCCCccCCCceeeecC
Q 017514 112 FQKILRKQLGSAS-----G------AAGQCFFTGVPGSFYGRLF-PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMAS 179 (370)
Q Consensus 112 ~~~~~~~~~~~~~-----~------~~~~~f~~~vpgSFy~~l~-p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~ 179 (370)
-.+...++.+..+ + ...-.+..+ +++.--. +...+|+++...++|= +|+
T Consensus 71 Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~---D~~~l~~~~~~~fd~v~D~~~~~~---l~~------------- 131 (218)
T PRK13255 71 AVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCG---DFFALTAADLADVDAVYDRAALIA---LPE------------- 131 (218)
T ss_pred HHHHHHHHcCCCccccccccccccccCceEEEEC---cccCCCcccCCCeeEEEehHhHhh---CCH-------------
Confidence 1111111111100 0 000112222 4433211 1136778887777773 332
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccC
Q 017514 180 TSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCF 259 (370)
Q Consensus 180 ~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f 259 (370)
.+...+++.-++-|+|||++++......+...
T Consensus 132 ---------------~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~--------------------------------- 163 (218)
T PRK13255 132 ---------------EMRERYVQQLAALLPAGCRGLLVTLDYPQEEL--------------------------------- 163 (218)
T ss_pred ---------------HHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC---------------------------------
Confidence 23344666778999999986665554332110
Q ss_pred CcCcccCCHHHHHHHHHhcCceEEEEEEEEee
Q 017514 260 NIPQYTPSPAEIKSEVIKEGSFTIDHLEVSEV 291 (370)
Q Consensus 260 ~~P~y~~s~eE~~~~ie~~GsF~i~~le~~~~ 291 (370)
.-|-|..+.+|+++.+. +.|+|+.++....
T Consensus 164 ~gPp~~~~~~el~~~~~--~~~~i~~~~~~~~ 193 (218)
T PRK13255 164 AGPPFSVSDEEVEALYA--GCFEIELLERQDV 193 (218)
T ss_pred CCCCCCCCHHHHHHHhc--CCceEEEeeeccc
Confidence 12447889999999885 2388888886543
No 73
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.29 E-value=0.013 Score=54.79 Aligned_cols=105 Identities=22% Similarity=0.441 Sum_probs=71.6
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCC
Q 017514 49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG 128 (370)
Q Consensus 49 ~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~ 128 (370)
++.-+|+|+|+|+|..+..++ +++ |.++++.=|||. + ++. ... .. +
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~--------~~~-------P~l~~~v~Dlp~-----v---~~~----~~~--~~-----r 144 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALA--------RAY-------PNLRATVFDLPE-----V---IEQ----AKE--AD-----R 144 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHH--------HHS-------TTSEEEEEE-HH-----H---HCC----HHH--TT-----T
T ss_pred cCccEEEeccCcchHHHHHHH--------HHC-------CCCcceeeccHh-----h---hhc----ccc--cc-----c
Confidence 455689999999999887766 543 779999999981 1 111 111 11 2
Q ss_pred ceEEeecCCCcccccCCCCceeEEEeccccc-cccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017514 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQ-WLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE 207 (370)
Q Consensus 129 ~~f~~~vpgSFy~~l~p~~sv~~~~S~~alh-Wls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~E 207 (370)
-.| +||+|+ .=+|. .|+++-.+.|| | |+ +|-..+|+.-++-
T Consensus 145 v~~---~~gd~f-~~~P~--~D~~~l~~vLh~~----~d----------------------------~~~~~iL~~~~~a 186 (241)
T PF00891_consen 145 VEF---VPGDFF-DPLPV--ADVYLLRHVLHDW----SD----------------------------EDCVKILRNAAAA 186 (241)
T ss_dssp EEE---EES-TT-TCCSS--ESEEEEESSGGGS-----H----------------------------HHHHHHHHHHHHH
T ss_pred ccc---ccccHH-hhhcc--ccceeeehhhhhc----ch----------------------------HHHHHHHHHHHHH
Confidence 233 778999 55666 99999999997 6 32 3445589999999
Q ss_pred hccC--ceEEEEeeccCCCC
Q 017514 208 LVAE--GRMVLTFLGRKSQD 225 (370)
Q Consensus 208 L~~G--G~lvl~~~g~~~~~ 225 (370)
|+|| |++++.=.-.++..
T Consensus 187 l~pg~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 187 LKPGKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp SEECTTEEEEEEEEEECSSS
T ss_pred hCCCCCCeEEEEeeccCCCC
Confidence 9999 99999877665543
No 74
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.28 E-value=0.0031 Score=48.60 Aligned_cols=102 Identities=25% Similarity=0.247 Sum_probs=60.2
Q ss_pred EEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCceEE
Q 017514 53 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFF 132 (370)
Q Consensus 53 ~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~ 132 (370)
+|+|+|||.|.++..+.. .+..+++..|+..+-....-+ ........ ...|.
T Consensus 1 ~ildig~G~G~~~~~~~~----------------~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~----~~~~~ 52 (107)
T cd02440 1 RVLDLGCGTGALALALAS----------------GPGARVTGVDISPVALELARK--------AAAALLAD----NVEVL 52 (107)
T ss_pred CeEEEcCCccHHHHHHhc----------------CCCCEEEEEeCCHHHHHHHHH--------HHhccccc----ceEEE
Confidence 589999999998776651 123678888875211111110 00000110 22333
Q ss_pred eecCCCcccccC-CCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 017514 133 TGVPGSFYGRLF-PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAE 211 (370)
Q Consensus 133 ~~vpgSFy~~l~-p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~G 211 (370)
.+ ++..... +.+++|+++....+++. + .+...+++.-.+-|+||
T Consensus 53 ~~---~~~~~~~~~~~~~d~i~~~~~~~~~---~-----------------------------~~~~~~l~~~~~~l~~~ 97 (107)
T cd02440 53 KG---DAEELPPEADESFDVIISDPPLHHL---V-----------------------------EDLARFLEEARRLLKPG 97 (107)
T ss_pred Ec---ChhhhccccCCceEEEEEccceeeh---h-----------------------------hHHHHHHHHHHHHcCCC
Confidence 32 4433333 67789999999998886 1 23334666667778999
Q ss_pred ceEEEE
Q 017514 212 GRMVLT 217 (370)
Q Consensus 212 G~lvl~ 217 (370)
|.+++.
T Consensus 98 g~~~~~ 103 (107)
T cd02440 98 GVLVLT 103 (107)
T ss_pred CEEEEE
Confidence 999886
No 75
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.19 E-value=0.0029 Score=56.39 Aligned_cols=110 Identities=20% Similarity=0.222 Sum_probs=65.4
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhh-CCCCCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG 128 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~ 128 (370)
..-+|+|+|||+|..++.+. +++ |...|+..|.- +......+... .... .
T Consensus 31 ~~~~vLDlG~G~G~i~~~la--------~~~-------~~~~v~~vDi~-----------~~a~~~a~~n~~~n~~---~ 81 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALA--------KRG-------PDAKVTAVDIN-----------PDALELAKRNAERNGL---E 81 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHH--------HTS-------TCEEEEEEESB-----------HHHHHHHHHHHHHTTC---T
T ss_pred cCCeEEEecCChHHHHHHHH--------HhC-------CCCEEEEEcCC-----------HHHHHHHHHHHHhcCc---c
Confidence 34689999999999988776 332 55778888875 22212111111 1111 2
Q ss_pred ceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017514 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (370)
Q Consensus 129 ~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL 208 (370)
. +..+..+.++.+. +.++|+++|+-=+|+-. .... .-+..|++.=.+-|
T Consensus 82 ~--v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~--------------------~~~~--------~~~~~~i~~a~~~L 130 (170)
T PF05175_consen 82 N--VEVVQSDLFEALP-DGKFDLIVSNPPFHAGG--------------------DDGL--------DLLRDFIEQARRYL 130 (170)
T ss_dssp T--EEEEESSTTTTCC-TTCEEEEEE---SBTTS--------------------HCHH--------HHHHHHHHHHHHHE
T ss_pred c--ccccccccccccc-ccceeEEEEccchhccc--------------------ccch--------hhHHHHHHHHHHhc
Confidence 2 3334567777655 88999999974333311 1111 12344677778999
Q ss_pred ccCceEEEEee
Q 017514 209 VAEGRMVLTFL 219 (370)
Q Consensus 209 ~~GG~lvl~~~ 219 (370)
+|||.+++..-
T Consensus 131 k~~G~l~lv~~ 141 (170)
T PF05175_consen 131 KPGGRLFLVIN 141 (170)
T ss_dssp EEEEEEEEEEE
T ss_pred cCCCEEEEEee
Confidence 99999998664
No 76
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.17 E-value=0.0014 Score=59.16 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=25.6
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLP 98 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp 98 (370)
...+|+|+|||+|..++.+. +++ |..+|+.-|.-
T Consensus 31 ~~~~vLDiG~G~G~~~~~la--------~~~-------~~~~v~~vD~s 64 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAA--------LQF-------PSLQVTAIERN 64 (187)
T ss_pred CCCEEEEECCcCCHHHHHHH--------HHC-------CCCEEEEEECC
Confidence 45689999999999888766 321 44778888874
No 77
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.15 E-value=0.016 Score=53.66 Aligned_cols=180 Identities=12% Similarity=0.063 Sum_probs=108.3
Q ss_pred HHHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHh
Q 017514 29 ISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRS 108 (370)
Q Consensus 29 ~~~~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~ 108 (370)
.++-++-|.++++.+... .+. +|+++|||+|--..... +. .|.+++-=+|+..+-+.++-.-
T Consensus 7 aeRNk~pIl~vL~~~l~~--~~~-~vLEiaSGtGqHa~~FA--------~~-------lP~l~WqPSD~~~~~~~sI~a~ 68 (204)
T PF06080_consen 7 AERNKDPILEVLKQYLPD--SGT-RVLEIASGTGQHAVYFA--------QA-------LPHLTWQPSDPDDNLRPSIRAW 68 (204)
T ss_pred hhhCHhHHHHHHHHHhCc--cCc-eEEEEcCCccHHHHHHH--------HH-------CCCCEEcCCCCChHHHhhHHHH
Confidence 344444455566654332 122 79999999997766555 32 3678999999997776666554
Q ss_pred hHHHHHHHHHhhCCCCCCCCceEEee-cCCCccc--ccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHH
Q 017514 109 LASFQKILRKQLGSASGAAGQCFFTG-VPGSFYG--RLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCV 185 (370)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~~f~~~-vpgSFy~--~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v 185 (370)
+... .+.+ . -.+..+=. -+..=.. --++..++|.++|.+.+|-.+- + .+
T Consensus 69 ~~~~--~~~N-----v--~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~-~------------------~~ 120 (204)
T PF06080_consen 69 IAEA--GLPN-----V--RPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPW-S------------------AV 120 (204)
T ss_pred HHhc--CCcc-----c--CCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCH-H------------------HH
Confidence 4321 0000 0 02222211 1100001 0126789999999999998433 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCccc
Q 017514 186 LTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYT 265 (370)
Q Consensus 186 ~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ 265 (370)
..+++.=++-|++||.|++.-+=..++..++.. + ..+.+.|++. +.-|=.
T Consensus 121 ------------~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~S-N---~~FD~sLr~r--------------dp~~Gi 170 (204)
T PF06080_consen 121 ------------EGLFAGAARLLKPGGLLFLYGPFNRDGKFTSES-N---AAFDASLRSR--------------DPEWGI 170 (204)
T ss_pred ------------HHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcH-H---HHHHHHHhcC--------------CCCcCc
Confidence 125666689999999999988766665444433 2 2344555432 444678
Q ss_pred CCHHHHHHHHHhcCceEEEE
Q 017514 266 PSPAEIKSEVIKEGSFTIDH 285 (370)
Q Consensus 266 ~s~eE~~~~ie~~GsF~i~~ 285 (370)
|..+++.+.-+++| ++++.
T Consensus 171 RD~e~v~~lA~~~G-L~l~~ 189 (204)
T PF06080_consen 171 RDIEDVEALAAAHG-LELEE 189 (204)
T ss_pred cCHHHHHHHHHHCC-CccCc
Confidence 99999999999999 65433
No 78
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.08 E-value=0.0033 Score=57.38 Aligned_cols=101 Identities=19% Similarity=0.108 Sum_probs=60.8
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhh-CCCCCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAG 128 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~ 128 (370)
...+|+|+|||+|..++.+. ... |..+|+.-|.- +......++.. .... .
T Consensus 45 ~g~~VLDiGcGtG~~al~la--------~~~-------~~~~V~giD~s-----------~~~l~~A~~~~~~~~l---~ 95 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLA--------IAR-------PELKVTLVDSL-----------GKKIAFLREVAAELGL---K 95 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHH--------HHC-------CCCeEEEEeCc-----------HHHHHHHHHHHHHcCC---C
Confidence 36899999999998888666 221 34678888874 33222221111 1111 1
Q ss_pred ceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017514 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (370)
Q Consensus 129 ~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL 208 (370)
+ +.-+.++..+ +.+++++|++++... .++..|++..++-|
T Consensus 96 ~--i~~~~~d~~~-~~~~~~fDlV~~~~~-------------------------------------~~~~~~l~~~~~~L 135 (187)
T PRK00107 96 N--VTVVHGRAEE-FGQEEKFDVVTSRAV-------------------------------------ASLSDLVELCLPLL 135 (187)
T ss_pred C--EEEEeccHhh-CCCCCCccEEEEccc-------------------------------------cCHHHHHHHHHHhc
Confidence 2 2223334422 334678999998520 12334788889999
Q ss_pred ccCceEEEEee
Q 017514 209 VAEGRMVLTFL 219 (370)
Q Consensus 209 ~~GG~lvl~~~ 219 (370)
+|||++++...
T Consensus 136 kpGG~lv~~~~ 146 (187)
T PRK00107 136 KPGGRFLALKG 146 (187)
T ss_pred CCCeEEEEEeC
Confidence 99999998853
No 79
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.07 E-value=0.0064 Score=58.95 Aligned_cols=122 Identities=20% Similarity=0.190 Sum_probs=66.2
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHH---hhCCCCCCC
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASGAA 127 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~---~~~~~~~~~ 127 (370)
..+|+|+|||+|..++.+. +++ |..+|+..|.- +.......+ ..+.. .
T Consensus 122 ~~~vLDlG~GsG~i~~~la--------~~~-------~~~~v~avDis-----------~~al~~A~~n~~~~~~~---~ 172 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACA--------YAF-------PEAEVDAVDIS-----------PDALAVAEINIERHGLE---D 172 (284)
T ss_pred CCEEEEEeCchhHHHHHHH--------HHC-------CCCEEEEEECC-----------HHHHHHHHHHHHHcCCC---C
Confidence 4689999999999888766 321 44788888874 222111111 11210 0
Q ss_pred CceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHH----HHHH--HHHHHHHHHHH
Q 017514 128 GQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVL----TAYY--EQFQRDFSLFL 201 (370)
Q Consensus 128 ~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~----~ay~--~Q~~~D~~~fL 201 (370)
+-.|.. +++++.+ |++++|+++|+ |+.+..+. + . ..++++. .|.. ..--.....|+
T Consensus 173 ~i~~~~---~D~~~~~-~~~~fD~Iv~N---------PPy~~~~~--~--~-~l~~~~~~ep~~al~gg~dGl~~~~~il 234 (284)
T TIGR03533 173 RVTLIQ---SDLFAAL-PGRKYDLIVSN---------PPYVDAED--M--A-DLPAEYHHEPELALASGEDGLDLVRRIL 234 (284)
T ss_pred cEEEEE---Cchhhcc-CCCCccEEEEC---------CCCCCccc--h--h-hCCHhhhcCHHHHhcCCCcHHHHHHHHH
Confidence 113333 4665543 66789999987 44332110 0 0 0011110 0000 00112345688
Q ss_pred HHHHHhhccCceEEEEee
Q 017514 202 KCRSEELVAEGRMVLTFL 219 (370)
Q Consensus 202 ~~Ra~EL~~GG~lvl~~~ 219 (370)
+.-.+-|+|||++++.+.
T Consensus 235 ~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 235 AEAADHLNENGVLVVEVG 252 (284)
T ss_pred HHHHHhcCCCCEEEEEEC
Confidence 888889999999998764
No 80
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.01 E-value=0.002 Score=57.03 Aligned_cols=110 Identities=11% Similarity=0.132 Sum_probs=63.3
Q ss_pred eEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017514 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~ 209 (370)
-|+.| +...=-++++++|++++.+++||+.+ ...+|+.-.+-|+
T Consensus 29 ~~~~~---d~~~lp~~~~~fD~v~~~~~l~~~~d---------------------------------~~~~l~ei~rvLk 72 (160)
T PLN02232 29 EWIEG---DAIDLPFDDCEFDAVTMGYGLRNVVD---------------------------------RLRAMKEMYRVLK 72 (160)
T ss_pred EEEEe---chhhCCCCCCCeeEEEecchhhcCCC---------------------------------HHHHHHHHHHHcC
Confidence 35444 55322357889999999999999643 1226777788999
Q ss_pred cCceEEEEeeccCCCCCCCchhhhHHHHH-HHHHHHHHhcCCcchhhhccCCcC----cccCCHHHHHHHHHhcCceEEE
Q 017514 210 AEGRMVLTFLGRKSQDPSSKECCYIWELL-ATALNNMVSEGLIEEEKVNCFNIP----QYTPSPAEIKSEVIKEGSFTID 284 (370)
Q Consensus 210 ~GG~lvl~~~g~~~~~~~~~~~~~~~~~l-~~al~~mv~eG~i~~e~~d~f~~P----~y~~s~eE~~~~ie~~GsF~i~ 284 (370)
|||++++.-++.++.... ...+... ... +..-|.+... ...+..- ..+++++|+.+.+++.| |+-.
T Consensus 73 pGG~l~i~d~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~-~~~y~yl~~si~~f~~~~el~~ll~~aG-F~~~ 143 (160)
T PLN02232 73 PGSRVSILDFNKSNQSVT----TFMQGWMIDNV---VVPVATVYDL-AKEYEYLKYSINGYLTGEELETLALEAG-FSSA 143 (160)
T ss_pred cCeEEEEEECCCCChHHH----HHHHHHHccch---HhhhhHHhCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcC-CCcc
Confidence 999999987775443110 0111100 000 0000111111 1122111 24689999999999999 8643
No 81
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=96.99 E-value=0.0036 Score=59.56 Aligned_cols=61 Identities=11% Similarity=0.143 Sum_probs=45.5
Q ss_pred CCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEee
Q 017514 144 FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFL 219 (370)
Q Consensus 144 ~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~ 219 (370)
.+..++|+++|+ |+.-..++. ..+.+.++-.+.+..-++..+++.=++=|+|||.+.++..
T Consensus 111 ~~~~~fD~Ii~N---------PPyf~~~~~------~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 111 LVFASFDLIICN---------PPYFKQGSR------LNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred ccccccCEEEeC---------CCCCCCccc------cCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 344478999986 765544322 1244566777778888999999999999999999999874
No 82
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.96 E-value=0.0035 Score=63.38 Aligned_cols=109 Identities=19% Similarity=0.195 Sum_probs=67.4
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhh-CCCCCCCCce
Q 017514 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQC 130 (370)
Q Consensus 52 ~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~~ 130 (370)
-.++|+|||+|..++.+. ++ .|+..++--|+- +..-....+.. ..+. .++
T Consensus 124 p~vLEIGcGsG~~ll~lA--------~~-------~P~~~~iGIEI~-----------~~~i~~a~~ka~~~gL---~NV 174 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQA--------KN-------NPNKLFIGIEIH-----------TPSIEQVLKQIELLNL---KNL 174 (390)
T ss_pred CeEEEEcCcccHHHHHHH--------Hh-------CCCCCEEEEECC-----------HHHHHHHHHHHHHcCC---CcE
Confidence 489999999998887665 32 266888888874 22111111111 1111 343
Q ss_pred EEeecCCCc--ccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017514 131 FFTGVPGSF--YGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEEL 208 (370)
Q Consensus 131 f~~~vpgSF--y~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL 208 (370)
.+. .++. .-..+|++|+|.++.++...|..+ +. .++ -...||+.-++-|
T Consensus 175 ~~i--~~DA~~ll~~~~~~s~D~I~lnFPdPW~Kk-rH------RRl--------------------v~~~fL~e~~RvL 225 (390)
T PRK14121 175 LII--NYDARLLLELLPSNSVEKIFVHFPVPWDKK-PH------RRV--------------------ISEDFLNEALRVL 225 (390)
T ss_pred EEE--ECCHHHhhhhCCCCceeEEEEeCCCCcccc-ch------hhc--------------------cHHHHHHHHHHHc
Confidence 322 2333 124689999999999888888222 10 011 1234888889999
Q ss_pred ccCceEEEEe
Q 017514 209 VAEGRMVLTF 218 (370)
Q Consensus 209 ~~GG~lvl~~ 218 (370)
+|||.+.+..
T Consensus 226 kpGG~l~l~T 235 (390)
T PRK14121 226 KPGGTLELRT 235 (390)
T ss_pred CCCcEEEEEE
Confidence 9999998876
No 83
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.94 E-value=0.0054 Score=57.24 Aligned_cols=125 Identities=20% Similarity=0.241 Sum_probs=67.8
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHH---hhCCCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASGA 126 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~---~~~~~~~~ 126 (370)
...+|+|+|||+|..++.+. +.+ |..+++..|.- +........ ..+.+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~--------~~~-------~~~~v~~iD~~-----------~~~~~~a~~~~~~~~~~--- 137 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALA--------KER-------PDARVTAVDIS-----------PEALAVARKNAARLGLD--- 137 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHH--------HHC-------CCCEEEEEECC-----------HHHHHHHHHHHHHcCCC---
Confidence 34689999999998887665 221 34678888864 222111111 11211
Q ss_pred CCceEEeecCCCcccccCCCCceeEEEeccccccccCC---CCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017514 127 AGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQV---PDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKC 203 (370)
Q Consensus 127 ~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~---P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~ 203 (370)
+--+ +.+++.. .+|++++|+++++--.+..+.. +..+... .|..... -......++..|++.
T Consensus 138 -~~~~---~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~---------e~~~~~~-~~~~~~~~~~~~i~~ 202 (251)
T TIGR03534 138 -NVTF---LQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFH---------EPRLALF-GGEDGLDFYRRIIAQ 202 (251)
T ss_pred -eEEE---EECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhhc---------CCHHHHc-CCCcHHHHHHHHHHH
Confidence 1123 3346655 4578899999996443332221 1110000 0000000 001123456778888
Q ss_pred HHHhhccCceEEEEe
Q 017514 204 RSEELVAEGRMVLTF 218 (370)
Q Consensus 204 Ra~EL~~GG~lvl~~ 218 (370)
=.+-|+|||.+++..
T Consensus 203 ~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 203 APRLLKPGGWLLLEI 217 (251)
T ss_pred HHHhcccCCEEEEEE
Confidence 899999999999854
No 84
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=96.91 E-value=0.008 Score=55.51 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=43.5
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHH---HhhCCCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILR---KQLGSASGA 126 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~---~~~~~~~~~ 126 (370)
..-+|+|+|||+|.+|..+. +.+ .++.+|+-.|.- +......+ ++.+.+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la--------~~~------~~~g~V~~vD~~-----------~~~~~~A~~~~~~~g~~--- 128 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLA--------EIV------GRDGLVVSIERI-----------PELAEKAERRLRKLGLD--- 128 (215)
T ss_pred CcCEEEEECCCccHHHHHHH--------HHh------CCCCEEEEEeCC-----------HHHHHHHHHHHHHCCCC---
Confidence 34699999999999998655 321 123567777763 22221111 111211
Q ss_pred CCceEEeecCCCcccccCCCCceeEEEecccc
Q 017514 127 AGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSL 158 (370)
Q Consensus 127 ~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~al 158 (370)
+-.|+.+ +...-+.+.+++|++++..+.
T Consensus 129 -~v~~~~~---d~~~~~~~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 129 -NVIVIVG---DGTQGWEPLAPYDRIYVTAAG 156 (215)
T ss_pred -CeEEEEC---CcccCCcccCCCCEEEEcCCc
Confidence 2234433 654444455689998876553
No 85
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.91 E-value=0.0052 Score=56.49 Aligned_cols=80 Identities=11% Similarity=0.081 Sum_probs=44.5
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhh-CCCCCCCCc
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ 129 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~ 129 (370)
..+|+|+|||+|..|..+. +.. + +.-+|+--|.- +.....-.+.. ..++ ..+
T Consensus 73 ~~~VLDiG~GsG~~~~~la--------~~~---~---~~g~V~~iD~~-----------~~~~~~a~~~l~~~~~--~~~ 125 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCA--------EAI---E---RRGKVYTVEIV-----------KELAIYAAQNIERLGY--WGV 125 (205)
T ss_pred CCEEEEECcCccHHHHHHH--------Hhc---C---CCCEEEEEeCC-----------HHHHHHHHHHHHHcCC--CCc
Confidence 4689999999999987665 221 1 12467777764 22221111111 0111 011
Q ss_pred -eEEeecCCCcccccCCCCceeEEEecccccc
Q 017514 130 -CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQW 160 (370)
Q Consensus 130 -~f~~~vpgSFy~~l~p~~sv~~~~S~~alhW 160 (370)
.+.. +++.+-+.+..++|.+++..++++
T Consensus 126 v~~~~---~d~~~~~~~~~~fD~Ii~~~~~~~ 154 (205)
T PRK13944 126 VEVYH---GDGKRGLEKHAPFDAIIVTAAAST 154 (205)
T ss_pred EEEEE---CCcccCCccCCCccEEEEccCcch
Confidence 2333 365444445578999999988765
No 86
>PRK04266 fibrillarin; Provisional
Probab=96.84 E-value=0.028 Score=52.83 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=17.6
Q ss_pred HHHHHHHhhccCceEEEEeecc
Q 017514 200 FLKCRSEELVAEGRMVLTFLGR 221 (370)
Q Consensus 200 fL~~Ra~EL~~GG~lvl~~~g~ 221 (370)
+|+.-.+-|+|||++++++..+
T Consensus 158 ~L~~~~r~LKpGG~lvI~v~~~ 179 (226)
T PRK04266 158 AIDNAEFFLKDGGYLLLAIKAR 179 (226)
T ss_pred HHHHHHHhcCCCcEEEEEEecc
Confidence 4556677899999999987764
No 87
>PRK14967 putative methyltransferase; Provisional
Probab=96.83 E-value=0.019 Score=53.39 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=82.0
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhh-CCCCCCCCc
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQ 129 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~ 129 (370)
.-+|+|+|||+|..++.+. +. +.-+++..|+. +.......... ..+. ..
T Consensus 37 ~~~vLDlGcG~G~~~~~la--------~~--------~~~~v~~vD~s-----------~~~l~~a~~n~~~~~~---~~ 86 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAA--------AA--------GAGSVTAVDIS-----------RRAVRSARLNALLAGV---DV 86 (223)
T ss_pred CCeEEEecCCHHHHHHHHH--------Hc--------CCCeEEEEECC-----------HHHHHHHHHHHHHhCC---ee
Confidence 3699999999999877554 11 11366777764 21111111100 0011 11
Q ss_pred eEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHH--HHHHHHHHHHHHHHHh
Q 017514 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYE--QFQRDFSLFLKCRSEE 207 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~--Q~~~D~~~fL~~Ra~E 207 (370)
.+ +-+++.. .++++++|+++++--.+.-+... ..+ ++ ...+|.. --..++..|++.=.+-
T Consensus 87 ~~---~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~--~~~-~~-----------~~~~~~~~~~~~~~~~~~l~~a~~~ 148 (223)
T PRK14967 87 DV---RRGDWAR-AVEFRPFDVVVSNPPYVPAPPDA--PPS-RG-----------PARAWDAGPDGRAVLDRLCDAAPAL 148 (223)
T ss_pred EE---EECchhh-hccCCCeeEEEECCCCCCCCccc--ccc-cC-----------hhHhhhCCCcHHHHHHHHHHHHHHh
Confidence 22 2347755 45788999999874322211110 000 00 0011110 0123466788877889
Q ss_pred hccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcC
Q 017514 208 LVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEG 279 (370)
Q Consensus 208 L~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~G 279 (370)
|+|||++++......+ +.+++..+...|+ .-+.+.+..+|+ .+..-.....+++.|
T Consensus 149 Lk~gG~l~~~~~~~~~--------------~~~~~~~l~~~g~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 204 (223)
T PRK14967 149 LAPGGSLLLVQSELSG--------------VERTLTRLSEAGL-DAEVVASQWIPF-GPVLRARAAWLERRG 204 (223)
T ss_pred cCCCcEEEEEEecccC--------------HHHHHHHHHHCCC-CeEEEEeeccCc-cHHHHHHHHHHHHcC
Confidence 9999999977654321 1233333333342 344445555663 332223445567777
No 88
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.77 E-value=0.0038 Score=64.40 Aligned_cols=49 Identities=29% Similarity=0.319 Sum_probs=34.8
Q ss_pred cccC-CCCceeEEEeccccc-cccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEe
Q 017514 141 GRLF-PRNSVHLFHSSYSLQ-WLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTF 218 (370)
Q Consensus 141 ~~l~-p~~sv~~~~S~~alh-Wls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~ 218 (370)
+||. |++++|++||+-|+. |.+.- | ++ |----+-|+|||.++++-
T Consensus 173 ~rLPfp~~~fDmvHcsrc~i~W~~~~--------g-~~------------------------l~evdRvLRpGGyfv~S~ 219 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCSRCLIPWHPND--------G-FL------------------------LFEVDRVLRPGGYFVLSG 219 (506)
T ss_pred ccccCCccchhhhhcccccccchhcc--------c-ce------------------------eehhhhhhccCceEEecC
Confidence 3665 999999999999985 74442 1 11 222267799999999987
Q ss_pred eccC
Q 017514 219 LGRK 222 (370)
Q Consensus 219 ~g~~ 222 (370)
+-..
T Consensus 220 ppv~ 223 (506)
T PF03141_consen 220 PPVY 223 (506)
T ss_pred Cccc
Confidence 7544
No 89
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.73 E-value=0.02 Score=56.12 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=42.3
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHH---hhCCCCCCCC
Q 017514 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASGAAG 128 (370)
Q Consensus 52 ~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~---~~~~~~~~~~ 128 (370)
.+|+|+|||+|..++.+. +.+ |..+|+..|+- +.......+ ..+... +
T Consensus 135 ~~VLDlG~GsG~iai~la--------~~~-------p~~~V~avDis-----------~~al~~A~~n~~~~~l~~---~ 185 (307)
T PRK11805 135 TRILDLCTGSGCIAIACA--------YAF-------PDAEVDAVDIS-----------PDALAVAEINIERHGLED---R 185 (307)
T ss_pred CEEEEEechhhHHHHHHH--------HHC-------CCCEEEEEeCC-----------HHHHHHHHHHHHHhCCCC---c
Confidence 689999999999887665 221 45788888884 222111111 112110 1
Q ss_pred ceEEeecCCCcccccCCCCceeEEEec
Q 017514 129 QCFFTGVPGSFYGRLFPRNSVHLFHSS 155 (370)
Q Consensus 129 ~~f~~~vpgSFy~~l~p~~sv~~~~S~ 155 (370)
-.|+. +++.+.+ |++++|+++|+
T Consensus 186 i~~~~---~D~~~~l-~~~~fDlIvsN 208 (307)
T PRK11805 186 VTLIE---SDLFAAL-PGRRYDLIVSN 208 (307)
T ss_pred EEEEE---CchhhhC-CCCCccEEEEC
Confidence 23433 4665543 66789999996
No 90
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.73 E-value=0.036 Score=54.95 Aligned_cols=186 Identities=17% Similarity=0.263 Sum_probs=114.1
Q ss_pred ccCCCCCchhHhhhHHHHHHHHHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCC
Q 017514 9 MNGGVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLP 88 (370)
Q Consensus 9 M~gg~G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p 88 (370)
|-||-|..+|.-+-.+|+.+-.. ..++.+.+...+.. ....-..+|.|-|.|+.+-.++ ..+ |
T Consensus 138 ~l~~~~~~~~~~~~~~~~sm~~l-~~~~~~~il~~~~G-f~~v~~avDvGgGiG~v~k~ll--------~~f-------p 200 (342)
T KOG3178|consen 138 MLGGYGGADERFSKDFNGSMSFL-STLVMKKILEVYTG-FKGVNVAVDVGGGIGRVLKNLL--------SKY-------P 200 (342)
T ss_pred hhhhhcccccccHHHHHHHHHHH-HHHHHHhhhhhhcc-cccCceEEEcCCcHhHHHHHHH--------HhC-------C
Confidence 56777766666556666554333 33333333333322 4567889999999999877666 333 5
Q ss_pred cceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCceE---EeecCCCcccccCCCCceeEEEeccccc-cccCC
Q 017514 89 EFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF---FTGVPGSFYGRLFPRNSVHLFHSSYSLQ-WLSQV 164 (370)
Q Consensus 89 ~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f---~~~vpgSFy~~l~p~~sv~~~~S~~alh-Wls~~ 164 (370)
.+..+==||| . -... .+++ +-=|.|.+++. .|+.- ++|--|+|| |
T Consensus 201 ~ik~infdlp------------~---v~~~---------a~~~~~gV~~v~gdmfq~-~P~~d--aI~mkWiLhdw---- 249 (342)
T KOG3178|consen 201 HIKGINFDLP------------F---VLAA---------APYLAPGVEHVAGDMFQD-TPKGD--AIWMKWILHDW---- 249 (342)
T ss_pred CCceeecCHH------------H---HHhh---------hhhhcCCcceeccccccc-CCCcC--eEEEEeecccC----
Confidence 6777666776 1 0100 1111 22266788988 77776 888888887 5
Q ss_pred CCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeccCCCCCCC---chhhhHHHHHHHH
Q 017514 165 PDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSS---KECCYIWELLATA 241 (370)
Q Consensus 165 P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~~~~~---~~~~~~~~~l~~a 241 (370)
++ +|...||+...+-|.|||.+++.=.-.+.+...+ ....-..+++..+
T Consensus 250 tD----------------------------edcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~ 301 (342)
T KOG3178|consen 250 TD----------------------------EDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLT 301 (342)
T ss_pred Ch----------------------------HHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHH
Confidence 32 6888999999999999999998755333321111 1111123333333
Q ss_pred HHHHHhc-CCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEEEEE
Q 017514 242 LNNMVSE-GLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLEVS 289 (370)
Q Consensus 242 l~~mv~e-G~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le~~ 289 (370)
. .+ | -.|+.+|++..+.++| |.+-..-..
T Consensus 302 ~----~~~G--------------kert~~e~q~l~~~~g-F~~~~~~~~ 331 (342)
T KOG3178|consen 302 Q----TSGG--------------KERTLKEFQALLPEEG-FPVCMVALT 331 (342)
T ss_pred H----hccc--------------eeccHHHHHhcchhhc-CceeEEEec
Confidence 2 22 3 3578999999999999 876544443
No 91
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=96.69 E-value=0.011 Score=54.05 Aligned_cols=103 Identities=19% Similarity=0.231 Sum_probs=69.7
Q ss_pred CCccccc--CCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceE
Q 017514 137 GSFYGRL--FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRM 214 (370)
Q Consensus 137 gSFy~~l--~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~l 214 (370)
++--+-| ||++|+|.++-+-+|+=+.+ |..+. .+-|+.|...
T Consensus 62 ~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~-P~~vL-----------------------------------~EmlRVgr~~ 105 (193)
T PF07021_consen 62 GDLDEGLADFPDQSFDYVILSQTLQAVRR-PDEVL-----------------------------------EEMLRVGRRA 105 (193)
T ss_pred CCHHHhHhhCCCCCccEEehHhHHHhHhH-HHHHH-----------------------------------HHHHHhcCeE
Confidence 3444444 79999999999999998766 64322 3457889999
Q ss_pred EEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcc------cCCHHHHHHHHHhcCceEEEEEEE
Q 017514 215 VLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQY------TPSPAEIKSEVIKEGSFTIDHLEV 288 (370)
Q Consensus 215 vl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y------~~s~eE~~~~ie~~GsF~i~~le~ 288 (370)
+++|+.- ..|..- ..+.-.|..+..+. +..+|| +-|..++++..++.| ++|++-..
T Consensus 106 IVsFPNF-----------g~W~~R----~~l~~~GrmPvt~~--lPy~WYdTPNih~~Ti~DFe~lc~~~~-i~I~~~~~ 167 (193)
T PF07021_consen 106 IVSFPNF-----------GHWRNR----LQLLLRGRMPVTKA--LPYEWYDTPNIHLCTIKDFEDLCRELG-IRIEERVF 167 (193)
T ss_pred EEEecCh-----------HHHHHH----HHHHhcCCCCCCCC--CCCcccCCCCcccccHHHHHHHHHHCC-CEEEEEEE
Confidence 9999631 134322 23334477776633 334444 569999999999998 88888777
Q ss_pred Eeecc
Q 017514 289 SEVNW 293 (370)
Q Consensus 289 ~~~~w 293 (370)
+...|
T Consensus 168 ~~~~~ 172 (193)
T PF07021_consen 168 LDGGR 172 (193)
T ss_pred EcCCC
Confidence 75443
No 92
>PTZ00146 fibrillarin; Provisional
Probab=96.61 E-value=0.04 Score=53.77 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=26.6
Q ss_pred hHhhhHHHHHHHHHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHH
Q 017514 18 YASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 18 Y~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~ 69 (370)
|..=++.+.+....+ ..-+..+.. .+ -.+|+|+|||+|..|..+.
T Consensus 107 yR~w~p~rSKlaa~i----~~g~~~l~I--kp-G~~VLDLGaG~G~~t~~lA 151 (293)
T PTZ00146 107 YRVWNPFRSKLAAAI----IGGVANIPI--KP-GSKVLYLGAASGTTVSHVS 151 (293)
T ss_pred eeeeCCcccHHHHHH----HCCcceecc--CC-CCEEEEeCCcCCHHHHHHH
Confidence 665566665554332 112222221 22 3689999999999887665
No 93
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.56 E-value=0.024 Score=52.49 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=16.8
Q ss_pred CceEEEeecCCCCcchHHHH
Q 017514 50 TKVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~ 69 (370)
...+|+|+|||+|..|..+.
T Consensus 76 ~g~~VLdIG~GsG~~t~~la 95 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVA 95 (212)
T ss_pred CcCEEEEECCcccHHHHHHH
Confidence 34799999999999987665
No 94
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.55 E-value=0.017 Score=60.49 Aligned_cols=125 Identities=13% Similarity=0.168 Sum_probs=65.4
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHH---hhCCCCCCC
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASGAA 127 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~---~~~~~~~~~ 127 (370)
..+|+|+|||+|..++.+. ... |..+|+.-|+. +........ ..+.. .
T Consensus 139 ~~~VLDlG~GsG~iai~la--------~~~-------p~~~v~avDis-----------~~al~~A~~N~~~~~l~---~ 189 (506)
T PRK01544 139 FLNILELGTGSGCIAISLL--------CEL-------PNANVIATDIS-----------LDAIEVAKSNAIKYEVT---D 189 (506)
T ss_pred CCEEEEccCchhHHHHHHH--------HHC-------CCCeEEEEECC-----------HHHHHHHHHHHHHcCCc---c
Confidence 4689999999999888665 221 45788999984 222111111 11210 0
Q ss_pred CceEEeecCCCcccccCCCCceeEEEeccccccccCCCC---CccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017514 128 GQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPD---GLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR 204 (370)
Q Consensus 128 ~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~---~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~R 204 (370)
+-.+ +-+++++. ++++++|+++|+--....+..+. .+.+..-.+ +--+.+...+ .+..+++.-
T Consensus 190 ~v~~---~~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~--AL~gg~dGl~--------~~~~il~~a 255 (506)
T PRK01544 190 RIQI---IHSNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSI--ALFAEEDGLQ--------AYFIIAENA 255 (506)
T ss_pred ceee---eecchhhh-CcCCCccEEEECCCCCCchhhhhcCchhhccCcHH--HhcCCccHHH--------HHHHHHHHH
Confidence 1123 33476554 36678999999743332222111 000000000 0000111122 344588877
Q ss_pred HHhhccCceEEEEe
Q 017514 205 SEELVAEGRMVLTF 218 (370)
Q Consensus 205 a~EL~~GG~lvl~~ 218 (370)
.+-|+|||.+++.+
T Consensus 256 ~~~L~~gG~l~lEi 269 (506)
T PRK01544 256 KQFLKPNGKIILEI 269 (506)
T ss_pred HHhccCCCEEEEEE
Confidence 88999999999864
No 95
>PHA03411 putative methyltransferase; Provisional
Probab=96.54 E-value=0.018 Score=55.71 Aligned_cols=115 Identities=13% Similarity=0.168 Sum_probs=68.0
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCceE
Q 017514 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCF 131 (370)
Q Consensus 52 ~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f 131 (370)
-+|+|+|||+|..++.+. ++. +..+|+..|+- +......++... +..+
T Consensus 66 grVLDLGcGsGilsl~la--------~r~-------~~~~V~gVDis-----------p~al~~Ar~n~~------~v~~ 113 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCML--------HRC-------KPEKIVCVELN-----------PEFARIGKRLLP------EAEW 113 (279)
T ss_pred CeEEEcCCCCCHHHHHHH--------HhC-------CCCEEEEEECC-----------HHHHHHHHHhCc------CCEE
Confidence 589999999998776554 221 23678888875 222221111111 1233
Q ss_pred EeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHH----HHH--HHHHHHHHHH
Q 017514 132 FTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQ----FQR--DFSLFLKCRS 205 (370)
Q Consensus 132 ~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q----~~~--D~~~fL~~Ra 205 (370)
.. +++.+ +.++.++|+++|+-.++++.. .+. .+.|+.+ -.+ .+..||+..+
T Consensus 114 v~---~D~~e-~~~~~kFDlIIsNPPF~~l~~-~d~------------------~~~~~~~GG~~g~~~l~~~~~l~~v~ 170 (279)
T PHA03411 114 IT---SDVFE-FESNEKFDVVISNPPFGKINT-TDT------------------KDVFEYTGGEFEFKVMTLGQKFADVG 170 (279)
T ss_pred EE---Cchhh-hcccCCCcEEEEcCCccccCc-hhh------------------hhhhhhccCccccccccHHHHHhhhH
Confidence 33 36643 345678999999999998543 110 0111111 001 1567999999
Q ss_pred HhhccCceEEEEeecc
Q 017514 206 EELVAEGRMVLTFLGR 221 (370)
Q Consensus 206 ~EL~~GG~lvl~~~g~ 221 (370)
.=|+|+|...+...|+
T Consensus 171 ~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 171 YFIVPTGSAGFAYSGR 186 (279)
T ss_pred heecCCceEEEEEecc
Confidence 9999999877775443
No 96
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=96.53 E-value=0.035 Score=50.93 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=16.3
Q ss_pred CceEEEeecCCCCcchHHHH
Q 017514 50 TKVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~ 69 (370)
...+|+|+|||+|..|..+.
T Consensus 78 ~~~~VLeiG~GsG~~t~~la 97 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLA 97 (212)
T ss_pred CCCEEEEECCCccHHHHHHH
Confidence 45799999999999887433
No 97
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.47 E-value=0.043 Score=49.98 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=23.7
Q ss_pred HHHHHHHHhhcccC--CCCceEEEeecCCCCcchHHHH
Q 017514 34 PITEEAMTKLFCST--SPTKVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 34 ~~l~~ai~~~~~~~--~~~~~~IaD~Gcs~G~Ns~~~~ 69 (370)
|+-.+.|+.+..+. ..+--++.|+|||+|.-|+..+
T Consensus 16 p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a 53 (187)
T COG2242 16 PMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA 53 (187)
T ss_pred CCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH
Confidence 44555566543322 2234599999999999988655
No 98
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=96.40 E-value=0.0076 Score=56.87 Aligned_cols=151 Identities=19% Similarity=0.210 Sum_probs=86.2
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHH---hhCCCCCCC
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASGAA 127 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~---~~~~~~~~~ 127 (370)
-.+|+|+|||-|-.|..+. + .| ..|+-.|+- +...+--+. +.+-.
T Consensus 60 g~~vLDvGCGgG~Lse~mA--------r----~G-----a~VtgiD~s-----------e~~I~~Ak~ha~e~gv~---- 107 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLA--------R----LG-----ASVTGIDAS-----------EKPIEVAKLHALESGVN---- 107 (243)
T ss_pred CCeEEEecCCccHhhHHHH--------H----CC-----CeeEEecCC-----------hHHHHHHHHhhhhcccc----
Confidence 4899999999996666544 2 23 889999985 333221111 11111
Q ss_pred CceEEeecCCCcccccC-CCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 128 GQCFFTGVPGSFYGRLF-PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 206 (370)
Q Consensus 128 ~~~f~~~vpgSFy~~l~-p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~ 206 (370)
--|..+ .- +.|. ..+++|+|.|.--|+- +|.. + .|+++-++
T Consensus 108 -i~y~~~---~~-edl~~~~~~FDvV~cmEVlEH---v~dp----------------~--------------~~~~~c~~ 149 (243)
T COG2227 108 -IDYRQA---TV-EDLASAGGQFDVVTCMEVLEH---VPDP----------------E--------------SFLRACAK 149 (243)
T ss_pred -ccchhh---hH-HHHHhcCCCccEEEEhhHHHc---cCCH----------------H--------------HHHHHHHH
Confidence 002111 11 3444 4478999987655554 6641 1 28999999
Q ss_pred hhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEE
Q 017514 207 ELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHL 286 (370)
Q Consensus 207 EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~l 286 (370)
=++|||.|+++..-|.-. +. ....-..+-+++ ++-.|.-+-++ +..++|+...+...+ |++...
T Consensus 150 lvkP~G~lf~STinrt~k---a~--~~~i~~ae~vl~-~vP~gTH~~~k---------~irp~El~~~~~~~~-~~~~~~ 213 (243)
T COG2227 150 LVKPGGILFLSTINRTLK---AY--LLAIIGAEYVLR-IVPKGTHDYRK---------FIKPAELIRWLLGAN-LKIIDR 213 (243)
T ss_pred HcCCCcEEEEeccccCHH---HH--HHHHHHHHHHHH-hcCCcchhHHH---------hcCHHHHHHhcccCC-ceEEee
Confidence 999999999998865421 10 001122333443 54444222221 345788888888766 555444
Q ss_pred E
Q 017514 287 E 287 (370)
Q Consensus 287 e 287 (370)
.
T Consensus 214 ~ 214 (243)
T COG2227 214 K 214 (243)
T ss_pred c
Confidence 4
No 99
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.37 E-value=0.024 Score=46.35 Aligned_cols=110 Identities=20% Similarity=0.208 Sum_probs=62.9
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHh---hCCCCCCCC
Q 017514 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQ---LGSASGAAG 128 (370)
Q Consensus 52 ~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~---~~~~~~~~~ 128 (370)
.+|+|.|||+|..++.+. +. + ..+++..|+- |......... .+.. .+
T Consensus 2 ~~vlD~~~G~G~~~~~~~--------~~----~----~~~~~gvdi~-----------~~~~~~a~~~~~~~~~~---~~ 51 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAAL--------RR----G----AARVTGVDID-----------PEAVELARRNLPRNGLD---DR 51 (117)
T ss_dssp EEEEEETSTTCHHHHHHH--------HH----C----TCEEEEEESS-----------HHHHHHHHHHCHHCTTT---TT
T ss_pred CEEEEcCcchHHHHHHHH--------HH----C----CCeEEEEEEC-----------HHHHHHHHHHHHHccCC---ce
Confidence 589999999998877666 22 1 2677787774 2221111111 1111 02
Q ss_pred ceEEeecCCCccccc--CCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 129 QCFFTGVPGSFYGRL--FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 206 (370)
Q Consensus 129 ~~f~~~vpgSFy~~l--~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~ 206 (370)
..+..+ ++..-. ++++++|+++++-=.+.....+. . -.++...|++.=.+
T Consensus 52 ~~~~~~---D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~-----------------~--------~~~~~~~~~~~~~~ 103 (117)
T PF13659_consen 52 VEVIVG---DARDLPEPLPDGKFDLIVTNPPYGPRSGDKA-----------------A--------LRRLYSRFLEAAAR 103 (117)
T ss_dssp EEEEES---HHHHHHHTCTTT-EEEEEE--STTSBTT-----------------------------GGCHHHHHHHHHHH
T ss_pred EEEEEC---chhhchhhccCceeEEEEECCCCccccccch-----------------h--------hHHHHHHHHHHHHH
Confidence 344444 554433 78899999998743322111110 0 01155678999999
Q ss_pred hhccCceEEEEee
Q 017514 207 ELVAEGRMVLTFL 219 (370)
Q Consensus 207 EL~~GG~lvl~~~ 219 (370)
=|+|||.+++.+.
T Consensus 104 ~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 104 LLKPGGVLVFITP 116 (117)
T ss_dssp HEEEEEEEEEEEE
T ss_pred HcCCCeEEEEEeC
Confidence 9999999999875
No 100
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.32 E-value=0.013 Score=54.73 Aligned_cols=143 Identities=22% Similarity=0.292 Sum_probs=83.2
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcce-EEeCCCCCCchHHHHHhhHHHHHHHHHhhCC---CC
Q 017514 49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQ-VFLNDLPGNDFNTIFRSLASFQKILRKQLGS---AS 124 (370)
Q Consensus 49 ~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~-v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~---~~ 124 (370)
.+..+.+|.|||.|+-|-.++ .|.++ |=+.|.. +.|.+..++..+. ..
T Consensus 54 ~~~~~alDcGAGIGRVTk~lL-----------------l~~f~~VDlVEp~-----------~~Fl~~a~~~l~~~~~~v 105 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLL-----------------LPVFDEVDLVEPV-----------EKFLEQAKEYLGKDNPRV 105 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTC-----------------CCC-SEEEEEES------------HHHHHHHHHHTCCGGCCE
T ss_pred CCcceEEecccccchhHHHHH-----------------HHhcCEeEEeccC-----------HHHHHHHHHHhcccCCCc
Confidence 468999999999999887554 12222 3333332 4444443332222 22
Q ss_pred CCCCceEEeecCCCcccccCCC-CceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHH
Q 017514 125 GAAGQCFFTGVPGSFYGRLFPR-NSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKC 203 (370)
Q Consensus 125 ~~~~~~f~~~vpgSFy~~l~p~-~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~ 203 (370)
..+|..|.- +| -|+ ++.|++|.-||+-.|.+ +||..||+.
T Consensus 106 ---~~~~~~gLQ-~f----~P~~~~YDlIW~QW~lghLTD-------------------------------~dlv~fL~R 146 (218)
T PF05891_consen 106 ---GEFYCVGLQ-DF----TPEEGKYDLIWIQWCLGHLTD-------------------------------EDLVAFLKR 146 (218)
T ss_dssp ---EEEEES-GG-G--------TT-EEEEEEES-GGGS-H-------------------------------HHHHHHHHH
T ss_pred ---ceEEecCHh-hc----cCCCCcEeEEEehHhhccCCH-------------------------------HHHHHHHHH
Confidence 467877744 33 365 79999999998887665 789999999
Q ss_pred HHHhhccCceEEEEe-eccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceE
Q 017514 204 RSEELVAEGRMVLTF-LGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFT 282 (370)
Q Consensus 204 Ra~EL~~GG~lvl~~-~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~ 282 (370)
..+-|+|||.+++== .+.... ..+|.= =-...||.+.++.+++++| ++
T Consensus 147 Ck~~L~~~G~IvvKEN~~~~~~-----------------------------~~~D~~-DsSvTRs~~~~~~lF~~AG-l~ 195 (218)
T PF05891_consen 147 CKQALKPNGVIVVKENVSSSGF-----------------------------DEFDEE-DSSVTRSDEHFRELFKQAG-LR 195 (218)
T ss_dssp HHHHEEEEEEEEEEEEEESSSE-----------------------------EEEETT-TTEEEEEHHHHHHHHHHCT--E
T ss_pred HHHhCcCCcEEEEEecCCCCCC-----------------------------cccCCc-cCeeecCHHHHHHHHHHcC-CE
Confidence 999999999888731 111100 011111 1246789999999999999 77
Q ss_pred EEEEEEE
Q 017514 283 IDHLEVS 289 (370)
Q Consensus 283 i~~le~~ 289 (370)
|.+.+.-
T Consensus 196 ~v~~~~Q 202 (218)
T PF05891_consen 196 LVKEEKQ 202 (218)
T ss_dssp EEEEEE-
T ss_pred EEEeccc
Confidence 7666543
No 101
>PRK14968 putative methyltransferase; Provisional
Probab=96.28 E-value=0.12 Score=45.74 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhccCceEEEEee
Q 017514 196 DFSLFLKCRSEELVAEGRMVLTFL 219 (370)
Q Consensus 196 D~~~fL~~Ra~EL~~GG~lvl~~~ 219 (370)
.+..|++.-.+-|+|||.+++...
T Consensus 126 ~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 126 VIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEEc
Confidence 356788888999999999988763
No 102
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=96.23 E-value=0.028 Score=50.67 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhccCceEEEEee
Q 017514 195 RDFSLFLKCRSEELVAEGRMVLTFL 219 (370)
Q Consensus 195 ~D~~~fL~~Ra~EL~~GG~lvl~~~ 219 (370)
++...+|+.-.+-|+|||++++...
T Consensus 123 ~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 123 DLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEc
Confidence 3566788888999999999999753
No 103
>PLN03075 nicotianamine synthase; Provisional
Probab=96.21 E-value=0.063 Score=52.50 Aligned_cols=108 Identities=13% Similarity=0.151 Sum_probs=62.0
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhC--CCCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG--SASGAA 127 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~--~~~~~~ 127 (370)
.+-+|||+|||.|+.|.+++. +.. .|.-++.--|.- +...+.-++... .++ ..
T Consensus 123 ~p~~VldIGcGpgpltaiila------a~~-------~p~~~~~giD~d-----------~~ai~~Ar~~~~~~~gL-~~ 177 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLA------KHH-------LPTTSFHNFDID-----------PSANDVARRLVSSDPDL-SK 177 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHH------Hhc-------CCCCEEEEEeCC-----------HHHHHHHHHHhhhccCc-cC
Confidence 568999999999998776661 111 144566666664 222111111110 111 00
Q ss_pred CceEEeecCCCcccccCC-CCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 128 GQCFFTGVPGSFYGRLFP-RNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 206 (370)
Q Consensus 128 ~~~f~~~vpgSFy~~l~p-~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~ 206 (370)
+-.|..+ +--+ +.+ .+.+|++|+. ++|-+++.++ . ..|+.=++
T Consensus 178 rV~F~~~---Da~~-~~~~l~~FDlVF~~-ALi~~dk~~k----------------~---------------~vL~~l~~ 221 (296)
T PLN03075 178 RMFFHTA---DVMD-VTESLKEYDVVFLA-ALVGMDKEEK----------------V---------------KVIEHLGK 221 (296)
T ss_pred CcEEEEC---chhh-cccccCCcCEEEEe-cccccccccH----------------H---------------HHHHHHHH
Confidence 2356555 2212 332 3689999999 7665544111 1 14666688
Q ss_pred hhccCceEEEEe
Q 017514 207 ELVAEGRMVLTF 218 (370)
Q Consensus 207 EL~~GG~lvl~~ 218 (370)
-|+|||.+++-+
T Consensus 222 ~LkPGG~Lvlr~ 233 (296)
T PLN03075 222 HMAPGALLMLRS 233 (296)
T ss_pred hcCCCcEEEEec
Confidence 999999999877
No 104
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.20 E-value=0.017 Score=53.69 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=28.9
Q ss_pred CCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEee
Q 017514 144 FPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFL 219 (370)
Q Consensus 144 ~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~ 219 (370)
++++|+|+++..-||.= .||..||+-=.+-|+|||.|.+.=.
T Consensus 118 L~~~svDv~VfcLSLMG----------------------------------Tn~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 118 LEDESVDVAVFCLSLMG----------------------------------TNWPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp --TT-EEEEEEES---S----------------------------------S-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCceeEEEEEhhhhC----------------------------------CCcHHHHHHHHheeccCcEEEEEEe
Confidence 48999999988766542 3667788888899999999988643
No 105
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.13 E-value=0.047 Score=52.77 Aligned_cols=123 Identities=17% Similarity=0.217 Sum_probs=63.8
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHH---hhCCCCCCCC
Q 017514 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASGAAG 128 (370)
Q Consensus 52 ~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~---~~~~~~~~~~ 128 (370)
.+|+|+|||+|..++.+. ..+ |..+|+..|.- +.......+ ..+.. .+
T Consensus 116 ~~vLDlG~GsG~i~l~la--------~~~-------~~~~v~avDis-----------~~al~~a~~n~~~~~~~---~~ 166 (284)
T TIGR00536 116 LHILDLGTGSGCIALALA--------YEF-------PNAEVIAVDIS-----------PDALAVAEENAEKNQLE---HR 166 (284)
T ss_pred CEEEEEeccHhHHHHHHH--------HHC-------CCCEEEEEECC-----------HHHHHHHHHHHHHcCCC---Cc
Confidence 689999999998877665 221 34788888874 221111111 11111 01
Q ss_pred ceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCC----ceeeecCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017514 129 QCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNK----GNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR 204 (370)
Q Consensus 129 ~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk----~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~R 204 (370)
-.|+. |++++.+ |++++|+++|+ |+.+..+. ..+. .-.|..+.-. -.---.+...|++.-
T Consensus 167 v~~~~---~d~~~~~-~~~~fDlIvsN---------PPyi~~~~~~~~~~~~--~~eP~~AL~g-g~dgl~~~~~ii~~a 230 (284)
T TIGR00536 167 VEFIQ---SNLFEPL-AGQKIDIIVSN---------PPYIDEEDLADLPNVV--RFEPLLALVG-GDDGLNILRQIIELA 230 (284)
T ss_pred EEEEE---CchhccC-cCCCccEEEEC---------CCCCCcchhhcCCccc--ccCcHHHhcC-CCcHHHHHHHHHHHH
Confidence 23433 4666543 55689999986 22221100 0000 0001000000 000113556688888
Q ss_pred HHhhccCceEEEEee
Q 017514 205 SEELVAEGRMVLTFL 219 (370)
Q Consensus 205 a~EL~~GG~lvl~~~ 219 (370)
.+-|+|||.+++.+.
T Consensus 231 ~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 231 PDYLKPNGFLVCEIG 245 (284)
T ss_pred HHhccCCCEEEEEEC
Confidence 889999999988774
No 106
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.12 E-value=0.047 Score=51.81 Aligned_cols=125 Identities=18% Similarity=0.274 Sum_probs=63.7
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhh--CCCCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL--GSASGAA 127 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~--~~~~~~~ 127 (370)
+..+|+|+|||+|..++.+. ... |..+++..|.- +......+... ....
T Consensus 108 ~~~~vLDiG~GsG~~~~~la--------~~~-------~~~~v~~iDis-----------~~~l~~a~~n~~~~~~~--- 158 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALA--------KER-------PDAEVTAVDIS-----------PEALAVARRNAKHGLGA--- 158 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHH--------HHC-------CCCEEEEEECC-----------HHHHHHHHHHHHhCCCC---
Confidence 45789999999998887665 221 34788888874 22111111111 1100
Q ss_pred CceEEeecCCCcccccCCCCceeEEEeccccc---cccCCCCCccCCCceeeecCCCCHHHHHHHH-HHHHHHHHHHHHH
Q 017514 128 GQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQ---WLSQVPDGLESNKGNIFMASTSPPCVLTAYY-EQFQRDFSLFLKC 203 (370)
Q Consensus 128 ~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alh---Wls~~P~~~~~nk~~i~~~~~s~~~v~~ay~-~Q~~~D~~~fL~~ 203 (370)
+-.|+.+ +++.. ++++++|+++|+--.. -+..+++.+... .|.. +.+. ...-+++..|++.
T Consensus 159 ~i~~~~~---d~~~~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~---------ep~~--al~~g~~g~~~~~~~~~~ 223 (275)
T PRK09328 159 RVEFLQG---DWFEP-LPGGRFDLIVSNPPYIPEADIHLLQPEVRDH---------EPHL--ALFGGEDGLDFYRRIIEQ 223 (275)
T ss_pred cEEEEEc---cccCc-CCCCceeEEEECCCcCCcchhhhCCchhhhc---------CCch--hhcCCCCHHHHHHHHHHH
Confidence 2233333 55433 3467999999852110 000011111100 0000 0000 0112455668888
Q ss_pred HHHhhccCceEEEEe
Q 017514 204 RSEELVAEGRMVLTF 218 (370)
Q Consensus 204 Ra~EL~~GG~lvl~~ 218 (370)
-.+-|+|||.+++..
T Consensus 224 ~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 224 APRYLKPGGWLLLEI 238 (275)
T ss_pred HHHhcccCCEEEEEE
Confidence 889999999999854
No 107
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.10 E-value=0.044 Score=54.45 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=36.6
Q ss_pred cCCCC--ceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeec
Q 017514 143 LFPRN--SVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLG 220 (370)
Q Consensus 143 l~p~~--sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g 220 (370)
.+++. .+|++-+-+|||..=... +-..+||+.-++-|+|||.++.+++.
T Consensus 138 ~~~~~~~~FDvVScQFalHY~Fese-----------------------------~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 138 KLPPRSRKFDVVSCQFALHYAFESE-----------------------------EKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TSSSTTS-EEEEEEES-GGGGGSSH-----------------------------HHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred hccccCCCcceeehHHHHHHhcCCH-----------------------------HHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 45544 999999999999954411 23456999999999999999999983
No 108
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.08 E-value=0.039 Score=56.37 Aligned_cols=121 Identities=19% Similarity=0.213 Sum_probs=64.5
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhh-CCCCCCCCce
Q 017514 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQC 130 (370)
Q Consensus 52 ~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~~ 130 (370)
.+|+|+|||+|..++.+. +. .|..+|+..|+- +...+..++.. .... +-.
T Consensus 253 ~rVLDLGcGSG~IaiaLA--------~~-------~p~a~VtAVDiS-----------~~ALe~AreNa~~~g~---rV~ 303 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVA--------LE-------RPDAFVRASDIS-----------PPALETARKNAADLGA---RVE 303 (423)
T ss_pred CEEEEEeChhhHHHHHHH--------Hh-------CCCCEEEEEECC-----------HHHHHHHHHHHHHcCC---cEE
Confidence 489999999999887665 22 145788888884 32222221111 1110 223
Q ss_pred EEeecCCCcccccCC-CCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHH----HHHHHH--HHHHHHHHHHHH
Q 017514 131 FFTGVPGSFYGRLFP-RNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCV----LTAYYE--QFQRDFSLFLKC 203 (370)
Q Consensus 131 f~~~vpgSFy~~l~p-~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v----~~ay~~--Q~~~D~~~fL~~ 203 (370)
|. -+++.+..+| .+++|+++|+ |+.+...+..+ .++.+ ..|... ---..+..+++.
T Consensus 304 fi---~gDl~e~~l~~~~~FDLIVSN---------PPYI~~~e~~l-----~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~ 366 (423)
T PRK14966 304 FA---HGSWFDTDMPSEGKWDIIVSN---------PPYIENGDKHL-----LQGDLRFEPQIALTDFSDGLSCIRTLAQG 366 (423)
T ss_pred EE---EcchhccccccCCCccEEEEC---------CCCCCcchhhh-----cchhhhcCHHHHhhCCCchHHHHHHHHHH
Confidence 43 3477665554 4689999996 44332211000 00000 011100 001124567777
Q ss_pred HHHhhccCceEEEEe
Q 017514 204 RSEELVAEGRMVLTF 218 (370)
Q Consensus 204 Ra~EL~~GG~lvl~~ 218 (370)
=.+-|+|||.+++..
T Consensus 367 a~~~LkpgG~lilEi 381 (423)
T PRK14966 367 APDRLAEGGFLLLEH 381 (423)
T ss_pred HHHhcCCCcEEEEEE
Confidence 778899999988755
No 109
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.05 E-value=0.021 Score=55.36 Aligned_cols=21 Identities=14% Similarity=0.078 Sum_probs=16.1
Q ss_pred HHHHHHHhhccCceEEEEeec
Q 017514 200 FLKCRSEELVAEGRMVLTFLG 220 (370)
Q Consensus 200 fL~~Ra~EL~~GG~lvl~~~g 220 (370)
++..-.+-|+|||.+++....
T Consensus 241 ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 241 LYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred HHHHHHHHcCCCcEEEEEeCc
Confidence 455556789999999987654
No 110
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=95.98 E-value=0.19 Score=48.63 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhccCceEEEEeeccCCC
Q 017514 197 FSLFLKCRSEELVAEGRMVLTFLGRKSQ 224 (370)
Q Consensus 197 ~~~fL~~Ra~EL~~GG~lvl~~~g~~~~ 224 (370)
+..|+..-.+-|+|||.+.+...+++..
T Consensus 264 ~~~~~~~a~R~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904|consen 264 LVHYWLLATRMLQPGGFEQLELVERKEH 291 (328)
T ss_pred HHHHHHhhHhhcccCCeEEEEecccccC
Confidence 5567888889999999999999988543
No 111
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.90 E-value=0.054 Score=49.31 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=24.8
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLP 98 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp 98 (370)
..-+|+|+|||+|..++.+. +. .+ +.-+|+.-|.-
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a--------~~---~~---~~~~v~avD~~ 74 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEAS--------LL---VG---ETGKVYAVDKD 74 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHH--------HH---hC---CCCEEEEEECC
Confidence 34699999999998887655 21 11 34678888874
No 112
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=95.89 E-value=0.097 Score=53.59 Aligned_cols=128 Identities=16% Similarity=0.055 Sum_probs=71.5
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhC-CCCCCCCc
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAAGQ 129 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~-~~~~~~~~ 129 (370)
.-+|+|+|||.|.-|+.+. +.. +.-+|+..|.- +.......+... .+. .
T Consensus 239 g~~VLDlcag~G~kt~~la--------~~~-------~~~~v~a~D~~-----------~~~l~~~~~n~~r~g~---~- 288 (426)
T TIGR00563 239 EETILDACAAPGGKTTHIL--------ELA-------PQAQVVALDIH-----------EHRLKRVYENLKRLGL---T- 288 (426)
T ss_pred CCeEEEeCCCccHHHHHHH--------HHc-------CCCeEEEEeCC-----------HHHHHHHHHHHHHcCC---C-
Confidence 3699999999999998766 321 13578888874 222222211111 111 1
Q ss_pred eEEeecCCCcccc--cCCCCceeEEEe---ccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017514 130 CFFTGVPGSFYGR--LFPRNSVHLFHS---SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR 204 (370)
Q Consensus 130 ~f~~~vpgSFy~~--l~p~~sv~~~~S---~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~R 204 (370)
+-+..+.++...- ..+.+++|.++. .+++.-+.+.|+... ..++..+. +..+.-..+|..=
T Consensus 289 ~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~---------~~~~~~~~-----~l~~lQ~~lL~~a 354 (426)
T TIGR00563 289 IKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKW---------LRKPRDIA-----ELAELQSEILDAI 354 (426)
T ss_pred eEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhh---------cCCHHHHH-----HHHHHHHHHHHHH
Confidence 2222223333221 125678999985 345555556665321 01222232 2233445578877
Q ss_pred HHhhccCceEEEEeeccC
Q 017514 205 SEELVAEGRMVLTFLGRK 222 (370)
Q Consensus 205 a~EL~~GG~lvl~~~g~~ 222 (370)
++-|+|||+|+.+.+.-.
T Consensus 355 ~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 355 WPLLKTGGTLVYATCSVL 372 (426)
T ss_pred HHhcCCCcEEEEEeCCCC
Confidence 888999999999988654
No 113
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.82 E-value=0.072 Score=51.63 Aligned_cols=125 Identities=17% Similarity=0.165 Sum_probs=68.1
Q ss_pred EEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHH-HhhCCCCCCCCceE
Q 017514 53 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILR-KQLGSASGAAGQCF 131 (370)
Q Consensus 53 ~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~-~~~~~~~~~~~~~f 131 (370)
+|+|+|||||.-++.+. ..+ |...|+..|+- +.-...-. +....+. .+..+
T Consensus 113 ~ilDlGTGSG~iai~la--------~~~-------~~~~V~a~Dis-----------~~Al~~A~~Na~~~~l--~~~~~ 164 (280)
T COG2890 113 RILDLGTGSGAIAIALA--------KEG-------PDAEVIAVDIS-----------PDALALARENAERNGL--VRVLV 164 (280)
T ss_pred cEEEecCChHHHHHHHH--------hhC-------cCCeEEEEECC-----------HHHHHHHHHHHHHcCC--ccEEE
Confidence 89999999999888776 432 55799999985 32211111 1111111 02233
Q ss_pred EeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHH-HHHHHHHHHHHHHHhhcc
Q 017514 132 FTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQ-FQRDFSLFLKCRSEELVA 210 (370)
Q Consensus 132 ~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q-~~~D~~~fL~~Ra~EL~~ 210 (370)
+.+ +.+..+-. .+|+++|+ |+.+..+.-..-...-.-++....+..- --....+|+..=..-|+|
T Consensus 165 ~~~---dlf~~~~~--~fDlIVsN---------PPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~ 230 (280)
T COG2890 165 VQS---DLFEPLRG--KFDLIVSN---------PPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP 230 (280)
T ss_pred Eee---ecccccCC--ceeEEEeC---------CCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC
Confidence 222 66666655 89999996 7766643000000000000001111111 112345588888888999
Q ss_pred CceEEEEee
Q 017514 211 EGRMVLTFL 219 (370)
Q Consensus 211 GG~lvl~~~ 219 (370)
||.+++...
T Consensus 231 ~g~l~le~g 239 (280)
T COG2890 231 GGVLILEIG 239 (280)
T ss_pred CcEEEEEEC
Confidence 999888764
No 114
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=95.75 E-value=0.078 Score=51.77 Aligned_cols=107 Identities=20% Similarity=0.252 Sum_probs=64.0
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCc-e
Q 017514 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ-C 130 (370)
Q Consensus 52 ~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~-~ 130 (370)
.+|+|+|||-|..++.+. +. .|..++.+.|.- ++.+..-+.-+. .+.. .+ +
T Consensus 160 ~~vlDlGCG~Gvlg~~la--------~~-------~p~~~vtmvDvn-------~~Av~~ar~Nl~---~N~~---~~~~ 211 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLA--------KK-------SPQAKLTLVDVN-------ARAVESARKNLA---ANGV---ENTE 211 (300)
T ss_pred CcEEEeCCCccHHHHHHH--------Hh-------CCCCeEEEEecC-------HHHHHHHHHhHH---HcCC---CccE
Confidence 499999999999888766 43 267999999974 333332111111 1111 22 3
Q ss_pred EEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 017514 131 FFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVA 210 (370)
Q Consensus 131 f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~ 210 (370)
.... +-|..+.. ++|+++|+ |+-.. .......+. ..++..=++-|++
T Consensus 212 v~~s---~~~~~v~~--kfd~IisN---------PPfh~--------G~~v~~~~~-----------~~~i~~A~~~L~~ 258 (300)
T COG2813 212 VWAS---NLYEPVEG--KFDLIISN---------PPFHA--------GKAVVHSLA-----------QEIIAAAARHLKP 258 (300)
T ss_pred EEEe---cccccccc--cccEEEeC---------CCccC--------CcchhHHHH-----------HHHHHHHHHhhcc
Confidence 3333 56677666 89999986 43111 110011111 1266666788999
Q ss_pred CceEEEEee
Q 017514 211 EGRMVLTFL 219 (370)
Q Consensus 211 GG~lvl~~~ 219 (370)
||.|.++.-
T Consensus 259 gGeL~iVan 267 (300)
T COG2813 259 GGELWIVAN 267 (300)
T ss_pred CCEEEEEEc
Confidence 999999886
No 115
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=95.75 E-value=0.033 Score=53.25 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhccCceEEEEee
Q 017514 195 RDFSLFLKCRSEELVAEGRMVLTFL 219 (370)
Q Consensus 195 ~D~~~fL~~Ra~EL~~GG~lvl~~~ 219 (370)
.||..|++--.+-|++||.+.+.=.
T Consensus 241 tn~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 241 TNLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred ccHHHHHHHHHHHhccCceEEEEeh
Confidence 4677799999999999999998754
No 116
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=95.73 E-value=0.079 Score=54.28 Aligned_cols=125 Identities=14% Similarity=0.084 Sum_probs=66.9
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhC-CCCCCCCc
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAAGQ 129 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~-~~~~~~~~ 129 (370)
.-+|+|+|||+|.-|+.+. +.. +...|+..|+- +......++... .+. ..
T Consensus 245 g~~VLDlgaG~G~~t~~la--------~~~-------~~~~v~a~D~s-----------~~~l~~~~~n~~~~g~---~~ 295 (427)
T PRK10901 245 GERVLDACAAPGGKTAHIL--------ELA-------PQAQVVALDID-----------AQRLERVRENLQRLGL---KA 295 (427)
T ss_pred CCEEEEeCCCCChHHHHHH--------HHc-------CCCEEEEEeCC-----------HHHHHHHHHHHHHcCC---Ce
Confidence 4689999999999988666 321 12567888874 222222211111 111 12
Q ss_pred eEEeecCCCccc--ccCCCCceeEEEec---cccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017514 130 CFFTGVPGSFYG--RLFPRNSVHLFHSS---YSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR 204 (370)
Q Consensus 130 ~f~~~vpgSFy~--~l~p~~sv~~~~S~---~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~R 204 (370)
.++.+ +..+ ..++++++|.+++. +...-+.+-|+... . ..++- ...+......+|..=
T Consensus 296 ~~~~~---D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~--------~--~~~~~----l~~l~~~q~~iL~~a 358 (427)
T PRK10901 296 TVIVG---DARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKW--------L--RRPED----IAALAALQSEILDAL 358 (427)
T ss_pred EEEEc---CcccchhhcccCCCCEEEECCCCCcccccccCccccc--------c--CCHHH----HHHHHHHHHHHHHHH
Confidence 23332 4422 23456789999842 22222233343211 0 01111 122334556688888
Q ss_pred HHhhccCceEEEEeecc
Q 017514 205 SEELVAEGRMVLTFLGR 221 (370)
Q Consensus 205 a~EL~~GG~lvl~~~g~ 221 (370)
.+-|+|||+|+.+.+..
T Consensus 359 ~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 359 WPLLKPGGTLLYATCSI 375 (427)
T ss_pred HHhcCCCCEEEEEeCCC
Confidence 89999999999887643
No 117
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=95.63 E-value=0.1 Score=53.76 Aligned_cols=125 Identities=11% Similarity=0.014 Sum_probs=70.2
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhC-CCCCCCCc
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAAGQ 129 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~-~~~~~~~~ 129 (370)
.-+|+|+|||+|..|+.+. +.. + +.-+|+..|+- +......++... .+. .+
T Consensus 251 g~~VLDlgaG~G~kt~~la--------~~~---~---~~~~V~avD~s-----------~~~l~~~~~~~~~~g~---~~ 302 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMA--------ELM---Q---NRGQITAVDRY-----------PQKLEKIRSHASALGI---TI 302 (445)
T ss_pred CCEEEEECCCCCHHHHHHH--------HHh---C---CCcEEEEEECC-----------HHHHHHHHHHHHHhCC---Ce
Confidence 3689999999999998666 221 1 12578888886 333222222111 011 12
Q ss_pred -eEEeecCCCcccccCCCCceeEEEe----ccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017514 130 -CFFTGVPGSFYGRLFPRNSVHLFHS----SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR 204 (370)
Q Consensus 130 -~f~~~vpgSFy~~l~p~~sv~~~~S----~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~R 204 (370)
.++.+ +. ..+.|++++|.++. +.+-+|-. -|+... ..++..+ .+..+.-..+|..=
T Consensus 303 v~~~~~---Da-~~~~~~~~fD~Vl~D~Pcsg~g~~~r-~p~~~~---------~~~~~~~-----~~l~~~q~~iL~~a 363 (445)
T PRK14904 303 IETIEG---DA-RSFSPEEQPDAILLDAPCTGTGVLGR-RAELRW---------KLTPEKL-----AELVGLQAELLDHA 363 (445)
T ss_pred EEEEeC---cc-cccccCCCCCEEEEcCCCCCcchhhc-Ccchhh---------cCCHHHH-----HHHHHHHHHHHHHH
Confidence 33333 44 23447778999883 33333332 243211 0112222 22334556689988
Q ss_pred HHhhccCceEEEEeeccC
Q 017514 205 SEELVAEGRMVLTFLGRK 222 (370)
Q Consensus 205 a~EL~~GG~lvl~~~g~~ 222 (370)
++-|+|||+|+...+...
T Consensus 364 ~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 364 ASLLKPGGVLVYATCSIE 381 (445)
T ss_pred HHhcCCCcEEEEEeCCCC
Confidence 999999999999887654
No 118
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=95.51 E-value=0.17 Score=48.09 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=24.8
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCC
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLP 98 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp 98 (370)
..+|+|+|||+|..++.+. +.+ |..+|+..|.-
T Consensus 87 ~~~vLDlg~GsG~i~l~la--------~~~-------~~~~v~~vDis 119 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALA--------AAL-------DGIELHAADID 119 (251)
T ss_pred CCEEEEecCchHHHHHHHH--------HhC-------CCCEEEEEECC
Confidence 4689999999999988766 221 34678888874
No 119
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=95.43 E-value=0.085 Score=49.02 Aligned_cols=157 Identities=16% Similarity=0.116 Sum_probs=87.8
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHH----HHhhCCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKIL----RKQLGSASG 125 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~----~~~~~~~~~ 125 (370)
.-.-++++|||+|+|=- +. .-.|--.|.+-|=- +.+.+-. .++....+
T Consensus 76 ~K~~vLEvgcGtG~Nfk-------------fy---~~~p~~svt~lDpn-----------~~mee~~~ks~~E~k~~~~- 127 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFK-------------FY---PWKPINSVTCLDPN-----------EKMEEIADKSAAEKKPLQV- 127 (252)
T ss_pred CccceEEecccCCCCcc-------------cc---cCCCCceEEEeCCc-----------HHHHHHHHHHHhhccCcce-
Confidence 34678999999999921 11 11244566666643 3332222 22222222
Q ss_pred CCCceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 126 AAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS 205 (370)
Q Consensus 126 ~~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra 205 (370)
..|+.|-+.+. -| +|+.|+|.+++..+|-= ..++.. -|+.-.
T Consensus 128 ---~~fvva~ge~l-~~-l~d~s~DtVV~TlvLCS------------------ve~~~k---------------~L~e~~ 169 (252)
T KOG4300|consen 128 ---ERFVVADGENL-PQ-LADGSYDTVVCTLVLCS------------------VEDPVK---------------QLNEVR 169 (252)
T ss_pred ---EEEEeechhcC-cc-cccCCeeeEEEEEEEec------------------cCCHHH---------------HHHHHH
Confidence 35777766433 12 29999999998876632 111222 355557
Q ss_pred HhhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEE
Q 017514 206 EELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDH 285 (370)
Q Consensus 206 ~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~ 285 (370)
+-|+|||++++.=-|+..-+ ....+|+...+-+-.+..+| +.=..|.-+.++++. |++.+
T Consensus 170 rlLRpgG~iifiEHva~~y~----~~n~i~q~v~ep~~~~~~dG---------------C~ltrd~~e~Leda~-f~~~~ 229 (252)
T KOG4300|consen 170 RLLRPGGRIIFIEHVAGEYG----FWNRILQQVAEPLWHLESDG---------------CVLTRDTGELLEDAE-FSIDS 229 (252)
T ss_pred HhcCCCcEEEEEecccccch----HHHHHHHHHhchhhheeccc---------------eEEehhHHHHhhhcc-cccch
Confidence 78999999999877665431 12234443333333343334 222345556677664 88887
Q ss_pred EEEEeec
Q 017514 286 LEVSEVN 292 (370)
Q Consensus 286 le~~~~~ 292 (370)
++.+..+
T Consensus 230 ~kr~~~~ 236 (252)
T KOG4300|consen 230 CKRFNFG 236 (252)
T ss_pred hhcccCC
Confidence 7766543
No 120
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=95.24 E-value=0.1 Score=53.68 Aligned_cols=125 Identities=12% Similarity=0.110 Sum_probs=72.9
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHH---hhCCCCCCC
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASGAA 127 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~---~~~~~~~~~ 127 (370)
.-+|+|+|||+|.-|+.+. +.. + +.-+|+..|+- +.......+ ..|.
T Consensus 238 g~~VLD~cagpGgkt~~la--------~~~---~---~~g~V~a~Dis-----------~~rl~~~~~n~~r~g~----- 287 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIA--------ELM---K---DQGKILAVDIS-----------REKIQLVEKHAKRLKL----- 287 (431)
T ss_pred CCEEEEeCCCccHHHHHHH--------HHc---C---CCCEEEEEECC-----------HHHHHHHHHHHHHcCC-----
Confidence 3589999999999998766 321 1 24689999985 222111111 1121
Q ss_pred Cc-eEEeecCCCccccc--CCCCceeEEEe---ccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHH
Q 017514 128 GQ-CFFTGVPGSFYGRL--FPRNSVHLFHS---SYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFL 201 (370)
Q Consensus 128 ~~-~f~~~vpgSFy~~l--~p~~sv~~~~S---~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL 201 (370)
.+ .+..+ +.. .+ +.++++|.++. .+.+..+.+-|+... ..++.. ..+..+.-..+|
T Consensus 288 ~~v~~~~~---Da~-~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~---------~~~~~~-----~~~l~~~Q~~iL 349 (431)
T PRK14903 288 SSIEIKIA---DAE-RLTEYVQDTFDRILVDAPCTSLGTARNHPEVLR---------RVNKED-----FKKLSEIQLRIV 349 (431)
T ss_pred CeEEEEEC---chh-hhhhhhhccCCEEEECCCCCCCccccCChHHHH---------hCCHHH-----HHHHHHHHHHHH
Confidence 12 23332 321 11 23567899885 355666666664321 011111 233444556788
Q ss_pred HHHHHhhccCceEEEEeeccCC
Q 017514 202 KCRSEELVAEGRMVLTFLGRKS 223 (370)
Q Consensus 202 ~~Ra~EL~~GG~lvl~~~g~~~ 223 (370)
..=++-|+|||+|+.+.+....
T Consensus 350 ~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 350 SQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred HHHHHhcCCCCEEEEEECCCCh
Confidence 8889999999999999887543
No 121
>PRK00811 spermidine synthase; Provisional
Probab=94.64 E-value=0.18 Score=48.80 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=17.8
Q ss_pred CCCceEEEeecCCCCcchHHHH
Q 017514 48 SPTKVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 48 ~~~~~~IaD~Gcs~G~Ns~~~~ 69 (370)
.+++-+|+|+|||+|..+..++
T Consensus 74 ~~~p~~VL~iG~G~G~~~~~~l 95 (283)
T PRK00811 74 HPNPKRVLIIGGGDGGTLREVL 95 (283)
T ss_pred CCCCCEEEEEecCchHHHHHHH
Confidence 3567899999999998877655
No 122
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=94.62 E-value=0.14 Score=46.88 Aligned_cols=113 Identities=23% Similarity=0.405 Sum_probs=66.1
Q ss_pred EEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCc-eE
Q 017514 53 AIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ-CF 131 (370)
Q Consensus 53 ~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~-~f 131 (370)
.++|+|||.|...+... .. .|+..++--|.- .+.+.+.+.. ... .+. .+ .+
T Consensus 20 l~lEIG~G~G~~l~~~A--------~~-------~Pd~n~iGiE~~---~~~v~~a~~~----~~~-~~l-----~Nv~~ 71 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELA--------KR-------NPDINFIGIEIR---KKRVAKALRK----AEK-RGL-----KNVRF 71 (195)
T ss_dssp EEEEET-TTSHHHHHHH--------HH-------STTSEEEEEES----HHHHHHHHHH----HHH-HTT-----SSEEE
T ss_pred eEEEecCCCCHHHHHHH--------HH-------CCCCCEEEEecc---hHHHHHHHHH----HHh-hcc-----cceEE
Confidence 89999999998876554 32 267888888874 2233333221 111 122 34 44
Q ss_pred EeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 017514 132 FTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAE 211 (370)
Q Consensus 132 ~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~G 211 (370)
+.+=...+...++|++||+-++=.+-=-| |..-- .|.++. ++ .||..=++-|+||
T Consensus 72 ~~~da~~~l~~~~~~~~v~~i~i~FPDPW----pK~rH-~krRl~----~~----------------~fl~~~~~~L~~g 126 (195)
T PF02390_consen 72 LRGDARELLRRLFPPGSVDRIYINFPDPW----PKKRH-HKRRLV----NP----------------EFLELLARVLKPG 126 (195)
T ss_dssp EES-CTTHHHHHSTTTSEEEEEEES---------SGGG-GGGSTT----SH----------------HHHHHHHHHEEEE
T ss_pred EEccHHHHHhhcccCCchheEEEeCCCCC----cccch-hhhhcC----Cc----------------hHHHHHHHHcCCC
Confidence 44445566788999999999998887777 43110 122221 11 2788889999999
Q ss_pred ceEEEEe
Q 017514 212 GRMVLTF 218 (370)
Q Consensus 212 G~lvl~~ 218 (370)
|.+.+..
T Consensus 127 G~l~~~T 133 (195)
T PF02390_consen 127 GELYFAT 133 (195)
T ss_dssp EEEEEEE
T ss_pred CEEEEEe
Confidence 9887664
No 123
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=94.49 E-value=0.11 Score=49.06 Aligned_cols=18 Identities=28% Similarity=0.560 Sum_probs=14.4
Q ss_pred CceEEEeecCCCCcchHH
Q 017514 50 TKVAIADLGCSSGPNTLL 67 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~ 67 (370)
..-+|+|+|||+|..++.
T Consensus 119 ~~~~VLDiGcGsG~l~i~ 136 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIA 136 (250)
T ss_pred CCCEEEEeCCcHHHHHHH
Confidence 347999999999976654
No 124
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=94.45 E-value=0.39 Score=49.36 Aligned_cols=124 Identities=15% Similarity=0.093 Sum_probs=65.7
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHH---hhCCCCCCC
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRK---QLGSASGAA 127 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~---~~~~~~~~~ 127 (370)
.-+|+|+|||+|..|+.+. +.. + +.-+|+..|+- +.......+ ..|-
T Consensus 251 g~~VLDlgaG~G~~t~~la--------~~~---~---~~~~v~avDi~-----------~~~l~~~~~n~~~~g~----- 300 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIA--------ELL---K---NTGKVVALDIH-----------EHKLKLIEENAKRLGL----- 300 (444)
T ss_pred CCEEEEeCCCCCHHHHHHH--------HHh---C---CCCEEEEEeCC-----------HHHHHHHHHHHHHcCC-----
Confidence 3689999999999998766 221 1 23578888874 221111111 1121
Q ss_pred CceEEeecCCCcccc--cCCCCceeEEEec---cccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 017514 128 GQCFFTGVPGSFYGR--LFPRNSVHLFHSS---YSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLK 202 (370)
Q Consensus 128 ~~~f~~~vpgSFy~~--l~p~~sv~~~~S~---~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~ 202 (370)
.+ +.-+-+++..- -++ +++|++++. +.+..+++.|+.... .++..+ ....+--..+|+
T Consensus 301 ~~--v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~---------~~~~~~-----~~l~~~q~~iL~ 363 (444)
T PRK14902 301 TN--IETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYN---------KTKEDI-----ESLQEIQLEILE 363 (444)
T ss_pred Ce--EEEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhc---------CCHHHH-----HHHHHHHHHHHH
Confidence 12 11222344221 123 789999863 334444444542110 111111 112223345788
Q ss_pred HHHHhhccCceEEEEeecc
Q 017514 203 CRSEELVAEGRMVLTFLGR 221 (370)
Q Consensus 203 ~Ra~EL~~GG~lvl~~~g~ 221 (370)
.=.+-|+|||+|+.+.+..
T Consensus 364 ~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 364 SVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred HHHHHcCCCCEEEEEcCCC
Confidence 8888999999999766543
No 125
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=94.24 E-value=0.25 Score=51.82 Aligned_cols=140 Identities=17% Similarity=0.154 Sum_probs=85.8
Q ss_pred HHHHHHHHHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCch
Q 017514 23 LVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDF 102 (370)
Q Consensus 23 ~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDF 102 (370)
..|++.++...|.+.-....+.. .+.-.++|+|||.|..++... +. .|+.-++--|.-.
T Consensus 323 ~~q~~~~e~~~p~~~i~~eklf~---~~~p~~lEIG~G~G~~~~~~A--------~~-------~p~~~~iGiE~~~--- 381 (506)
T PRK01544 323 GVQQNLLDNELPKYLFSKEKLVN---EKRKVFLEIGFGMGEHFINQA--------KM-------NPDALFIGVEVYL--- 381 (506)
T ss_pred HHHHHHHHhhhhhhCCCHHHhCC---CCCceEEEECCCchHHHHHHH--------Hh-------CCCCCEEEEEeeH---
Confidence 37888888888876644333322 345789999999998877555 32 2556666666542
Q ss_pred HHHHHhhHHHHHHHHHhhCCCCCCCCceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCC
Q 017514 103 NTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSP 182 (370)
Q Consensus 103 ntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~ 182 (370)
+.+-+.+.. . .+.+ . .++.+..--..+....||++|||-++-++.=-| |+.-- .|.++. ++
T Consensus 382 ~~~~~~~~~----~-~~~~--l---~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPW----pKkrh-~krRl~----~~ 442 (506)
T PRK01544 382 NGVANVLKL----A-GEQN--I---TNFLLFPNNLDLILNDLPNNSLDGIYILFPDPW----IKNKQ-KKKRIF----NK 442 (506)
T ss_pred HHHHHHHHH----H-HHcC--C---CeEEEEcCCHHHHHHhcCcccccEEEEECCCCC----CCCCC-cccccc----CH
Confidence 233333321 1 1112 2 344443222233567789999999999998888 54211 233331 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEe
Q 017514 183 PCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTF 218 (370)
Q Consensus 183 ~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~ 218 (370)
.||+.=++-|+|||.+.+..
T Consensus 443 ----------------~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 443 ----------------ERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred ----------------HHHHHHHHhcCCCCEEEEEc
Confidence 27888899999999998764
No 126
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=94.05 E-value=0.53 Score=46.55 Aligned_cols=121 Identities=18% Similarity=0.278 Sum_probs=66.1
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhC-CCCCCC
Q 017514 49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLG-SASGAA 127 (370)
Q Consensus 49 ~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~-~~~~~~ 127 (370)
+...+|+|||||+|.-|..+++.+. +. . ..+.++--|+. .+.......... ..+
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~----~~------~-~~~~Y~plDIS-----------~~~L~~a~~~L~~~~~--- 129 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALE----RQ------K-KSVDYYALDVS-----------RSELQRTLAELPLGNF--- 129 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH----hc------C-CCceEEEEECC-----------HHHHHHHHHhhhhccC---
Confidence 3456899999999999998885553 11 1 13788888885 222111111112 223
Q ss_pred CceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCC-----CCHHHHHHHHHHHHHHHHHHHH
Q 017514 128 GQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMAST-----SPPCVLTAYYEQFQRDFSLFLK 202 (370)
Q Consensus 128 ~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~-----s~~~v~~ay~~Q~~~D~~~fL~ 202 (370)
+.+=+.|+-|+|.. .++||.+ |.. ..++..++.-.+ .|++ -..||+
T Consensus 130 p~l~v~~l~gdy~~---------------~l~~l~~-~~~-~~~~r~~~flGSsiGNf~~~e------------a~~fL~ 180 (319)
T TIGR03439 130 SHVRCAGLLGTYDD---------------GLAWLKR-PEN-RSRPTTILWLGSSIGNFSRPE------------AAAFLA 180 (319)
T ss_pred CCeEEEEEEecHHH---------------HHhhccc-ccc-cCCccEEEEeCccccCCCHHH------------HHHHHH
Confidence 44666777788843 3445433 100 011111221111 2222 234776
Q ss_pred HHHH-hhccCceEEEEeeccCC
Q 017514 203 CRSE-ELVAEGRMVLTFLGRKS 223 (370)
Q Consensus 203 ~Ra~-EL~~GG~lvl~~~g~~~ 223 (370)
.-++ -|.|||.|++.+=+.++
T Consensus 181 ~~~~~~l~~~d~lLiG~D~~k~ 202 (319)
T TIGR03439 181 GFLATALSPSDSFLIGLDGCKD 202 (319)
T ss_pred HHHHhhCCCCCEEEEecCCCCC
Confidence 6667 89999999997755443
No 127
>PRK07402 precorrin-6B methylase; Provisional
Probab=93.99 E-value=0.48 Score=42.89 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhccCceEEEEee
Q 017514 197 FSLFLKCRSEELVAEGRMVLTFL 219 (370)
Q Consensus 197 ~~~fL~~Ra~EL~~GG~lvl~~~ 219 (370)
+..+|+.-.+-|+|||++++...
T Consensus 121 ~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 121 IKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHHHHHHHHHhcCCCeEEEEEee
Confidence 34567776777999999999875
No 128
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=93.79 E-value=4.4 Score=39.70 Aligned_cols=166 Identities=19% Similarity=0.226 Sum_probs=91.2
Q ss_pred hHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHH
Q 017514 32 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLAS 111 (370)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~ 111 (370)
+..+|+++|..+.. ...+++|+|+-||+|+- +++++.+. ...| .+|.++|.- +.
T Consensus 119 l~~~i~~ai~~L~~--~g~pvrIlDIAaG~GRY-------vlDal~~~-----~~~~-~~i~LrDys-----------~~ 172 (311)
T PF12147_consen 119 LEELIRQAIARLRE--QGRPVRILDIAAGHGRY-------VLDALEKH-----PERP-DSILLRDYS-----------PI 172 (311)
T ss_pred HHHHHHHHHHHHHh--cCCceEEEEeccCCcHH-------HHHHHHhC-----CCCC-ceEEEEeCC-----------HH
Confidence 55666777766643 36789999999999986 55666543 1124 688999875 43
Q ss_pred HHHH---HHHhhCCCCCCCCceEEeecCCCc--ccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHH
Q 017514 112 FQKI---LRKQLGSASGAAGQCFFTGVPGSF--YGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVL 186 (370)
Q Consensus 112 ~~~~---~~~~~~~~~~~~~~~f~~~vpgSF--y~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~ 186 (370)
+-.. +..+.|-.- -.-|.-+=.-+. |..|-|.-.+ +.++. +.
T Consensus 173 Nv~~g~~li~~~gL~~---i~~f~~~dAfd~~~l~~l~p~P~l-------------------------~iVsG-----L~ 219 (311)
T PF12147_consen 173 NVEKGRALIAERGLED---IARFEQGDAFDRDSLAALDPAPTL-------------------------AIVSG-----LY 219 (311)
T ss_pred HHHHHHHHHHHcCCcc---ceEEEecCCCCHhHhhccCCCCCE-------------------------EEEec-----ch
Confidence 3222 122223210 113444411111 2222222111 12221 22
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCccc
Q 017514 187 TAYYEQFQRDF-SLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYT 265 (370)
Q Consensus 187 ~ay~~Q~~~D~-~~fL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ 265 (370)
+-|.+ .|+ .+=|+--+.-+.|||.|+.+.- + -.| -.+.+..+|...- +| -||.+
T Consensus 220 ElF~D---n~lv~~sl~gl~~al~pgG~lIyTgQ--P-wHP-------Qle~IAr~LtsHr-~g-----------~~WvM 274 (311)
T PF12147_consen 220 ELFPD---NDLVRRSLAGLARALEPGGYLIYTGQ--P-WHP-------QLEMIARVLTSHR-DG-----------KAWVM 274 (311)
T ss_pred hhCCc---HHHHHHHHHHHHHHhCCCcEEEEcCC--C-CCc-------chHHHHHHHhccc-CC-----------CceEE
Confidence 22221 222 2245666888999999988742 1 111 1356777775441 23 57765
Q ss_pred --CCHHHHHHHHHhcCceE
Q 017514 266 --PSPAEIKSEVIKEGSFT 282 (370)
Q Consensus 266 --~s~eE~~~~ie~~GsF~ 282 (370)
||..|+..+++.+| |+
T Consensus 275 RrRsq~EmD~Lv~~aG-F~ 292 (311)
T PF12147_consen 275 RRRSQAEMDQLVEAAG-FE 292 (311)
T ss_pred EecCHHHHHHHHHHcC-Cc
Confidence 79999999999999 64
No 129
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=93.66 E-value=0.63 Score=47.81 Aligned_cols=28 Identities=14% Similarity=0.020 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhhccCceEEEEeecc
Q 017514 194 QRDFSLFLKCRSEELVAEGRMVLTFLGR 221 (370)
Q Consensus 194 ~~D~~~fL~~Ra~EL~~GG~lvl~~~g~ 221 (370)
.+.-..+|..=++-|+|||+||.+.+..
T Consensus 360 ~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 360 APLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3444678888899999999999877654
No 130
>PRK04457 spermidine synthase; Provisional
Probab=93.65 E-value=0.47 Score=45.42 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=19.2
Q ss_pred HHHHHHHHhhccCceEEEEeeccC
Q 017514 199 LFLKCRSEELVAEGRMVLTFLGRK 222 (370)
Q Consensus 199 ~fL~~Ra~EL~~GG~lvl~~~g~~ 222 (370)
.|++.-.+-|+|||+++++..+++
T Consensus 158 efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 158 PFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred HHHHHHHHhcCCCcEEEEEcCCCc
Confidence 377777788999999999877543
No 131
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=93.10 E-value=1.1 Score=44.21 Aligned_cols=24 Identities=29% Similarity=0.219 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhccCceEEEEeecc
Q 017514 198 SLFLKCRSEELVAEGRMVLTFLGR 221 (370)
Q Consensus 198 ~~fL~~Ra~EL~~GG~lvl~~~g~ 221 (370)
..+|+.=++-|+|||++++.++..
T Consensus 274 ~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 274 ERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred HHHHHHHHHHccCCcEEEEEEcCC
Confidence 457777788999999999998754
No 132
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=0.56 Score=43.61 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=18.4
Q ss_pred CceEEEeecCCCCcchHHHHHHHHH
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIK 74 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~ 74 (370)
...+|+|+|||||.+|.. +++++.
T Consensus 72 ~g~~VLEIGtGsGY~aAv-la~l~~ 95 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAV-LARLVG 95 (209)
T ss_pred CCCeEEEECCCchHHHHH-HHHHhC
Confidence 458999999999999874 444443
No 133
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=92.67 E-value=0.85 Score=43.60 Aligned_cols=30 Identities=10% Similarity=0.067 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhhccCceEEEEeeccC
Q 017514 193 FQRDFSLFLKCRSEELVAEGRMVLTFLGRK 222 (370)
Q Consensus 193 ~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~ 222 (370)
..+.-..+|+.=++-|+|||+|+.......
T Consensus 174 l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 174 ISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 334445688888899999999998876543
No 134
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=92.65 E-value=0.38 Score=46.65 Aligned_cols=135 Identities=18% Similarity=0.164 Sum_probs=82.8
Q ss_pred hhHhhhHHHHHHHHHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCC
Q 017514 17 SYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLND 96 (370)
Q Consensus 17 sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nD 96 (370)
-|.+.+..=...-....|++.+.+... +.-..+.|.|||.|.-. +.. |-..++-.|
T Consensus 17 IYd~ia~~fs~tr~~~Wp~v~qfl~~~-----~~gsv~~d~gCGngky~------------------~~~-p~~~~ig~D 72 (293)
T KOG1331|consen 17 IYDKIATHFSATRAAPWPMVRQFLDSQ-----PTGSVGLDVGCGNGKYL------------------GVN-PLCLIIGCD 72 (293)
T ss_pred HHHHhhhhccccccCccHHHHHHHhcc-----CCcceeeecccCCcccC------------------cCC-Ccceeeecc
Confidence 355555542333344567777776543 33578999999999542 223 447788888
Q ss_pred CCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceee
Q 017514 97 LPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIF 176 (370)
Q Consensus 97 lp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~ 176 (370)
+. +.++.. .+..|. ...++.-+ -.-.+++.|+|...|.+.+||||.--.
T Consensus 73 ~c-------~~l~~~-----ak~~~~----~~~~~ad~-----l~~p~~~~s~d~~lsiavihhlsT~~R---------- 121 (293)
T KOG1331|consen 73 LC-------TGLLGG-----AKRSGG----DNVCRADA-----LKLPFREESFDAALSIAVIHHLSTRER---------- 121 (293)
T ss_pred hh-------hhhccc-----cccCCC----ceeehhhh-----hcCCCCCCccccchhhhhhhhhhhHHH----------
Confidence 75 111111 111111 01233222 234568899999999999999987221
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeccCCCCC
Q 017514 177 MASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDP 226 (370)
Q Consensus 177 ~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~~~ 226 (370)
+.. .|+.-.+.|+|||.+.+..-+.....+
T Consensus 122 -----R~~---------------~l~e~~r~lrpgg~~lvyvwa~~q~~~ 151 (293)
T KOG1331|consen 122 -----RER---------------ALEELLRVLRPGGNALVYVWALEQHQS 151 (293)
T ss_pred -----HHH---------------HHHHHHHHhcCCCceEEEEehhhccCc
Confidence 111 355567899999999999998876654
No 135
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.54 E-value=0.97 Score=44.75 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=16.6
Q ss_pred ceEEEeecCCCCcchHHHH
Q 017514 51 KVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~ 69 (370)
.-+|+|+|||+|.+++.+.
T Consensus 81 g~~VLDIG~GtG~~a~~LA 99 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMS 99 (322)
T ss_pred CCEEEEEeCCccHHHHHHH
Confidence 4699999999999988766
No 136
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=91.99 E-value=0.37 Score=44.77 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=14.8
Q ss_pred ceEEEeecCCCCcchHHHH
Q 017514 51 KVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~ 69 (370)
-.+++|+|||+|.+|.++.
T Consensus 73 g~~VLeIGtGsGY~aAlla 91 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALLA 91 (209)
T ss_dssp T-EEEEES-TTSHHHHHHH
T ss_pred CCEEEEecCCCcHHHHHHH
Confidence 4799999999999988665
No 137
>PLN02672 methionine S-methyltransferase
Probab=91.94 E-value=0.84 Score=52.00 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhccCceEEEEeecc
Q 017514 198 SLFLKCRSEELVAEGRMVLTFLGR 221 (370)
Q Consensus 198 ~~fL~~Ra~EL~~GG~lvl~~~g~ 221 (370)
.+++..-.+-|+|||.|++.+..+
T Consensus 258 r~i~~~a~~~L~pgG~l~lEiG~~ 281 (1082)
T PLN02672 258 ARAVEEGISVIKPMGIMIFNMGGR 281 (1082)
T ss_pred HHHHHHHHHhccCCCEEEEEECcc
Confidence 457777788999999999998643
No 138
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=91.37 E-value=0.98 Score=43.27 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=16.0
Q ss_pred HHHHHHHHhhccCceEEEE
Q 017514 199 LFLKCRSEELVAEGRMVLT 217 (370)
Q Consensus 199 ~fL~~Ra~EL~~GG~lvl~ 217 (370)
.|++.-++-|+|||++++.
T Consensus 167 ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 167 EFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred HHHHHHHHHhCCCcEEEEc
Confidence 3677777889999999987
No 139
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=90.99 E-value=8.4 Score=35.92 Aligned_cols=162 Identities=22% Similarity=0.245 Sum_probs=91.2
Q ss_pred HhHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhH
Q 017514 31 IAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLA 110 (370)
Q Consensus 31 ~~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~ 110 (370)
...|.|.+.+..+. .+..-+|++-|||.|...+.+. ++ | .+|+--|+. +
T Consensus 21 ~~~p~L~~~~~~l~---~~~~~rvLvPgCG~g~D~~~La--------~~----G-----~~VvGvDls-----------~ 69 (218)
T PF05724_consen 21 EPNPALVEYLDSLA---LKPGGRVLVPGCGKGYDMLWLA--------EQ----G-----HDVVGVDLS-----------P 69 (218)
T ss_dssp TSTHHHHHHHHHHT---TSTSEEEEETTTTTSCHHHHHH--------HT----T-----EEEEEEES------------H
T ss_pred CCCHHHHHHHHhcC---CCCCCeEEEeCCCChHHHHHHH--------HC----C-----CeEEEEecC-----------H
Confidence 35667777766532 2345799999999999977666 32 2 677777764 2
Q ss_pred HHHHHHHHhhCCC--CCCCCceE------EeecCCCcccccCCCC--ceeEEEeccccccccCCCCCccCCCceeeecCC
Q 017514 111 SFQKILRKQLGSA--SGAAGQCF------FTGVPGSFYGRLFPRN--SVHLFHSSYSLQWLSQVPDGLESNKGNIFMAST 180 (370)
Q Consensus 111 ~~~~~~~~~~~~~--~~~~~~~f------~~~vpgSFy~~l~p~~--sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~ 180 (370)
.--....++.+.. ........ +.-+-|+||. +-|.. ++|+++=.++|+=| |+
T Consensus 70 ~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~-l~~~~~g~fD~iyDr~~l~Al---pp-------------- 131 (218)
T PF05724_consen 70 TAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFE-LPPEDVGKFDLIYDRTFLCAL---PP-------------- 131 (218)
T ss_dssp HHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTT-GGGSCHHSEEEEEECSSTTTS----G--------------
T ss_pred HHHHHHHHHhccCCCcccccceeeecCCceEEEEccccc-CChhhcCCceEEEEecccccC---CH--------------
Confidence 2111111111110 00000111 1223348877 33333 48999999988763 43
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCC
Q 017514 181 SPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFN 260 (370)
Q Consensus 181 s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~ 260 (370)
+..++|++ .-++=|+|||++++..+-.+... ..
T Consensus 132 ---~~R~~Ya~-----------~l~~ll~p~g~~lLi~l~~~~~~---------------------------------~~ 164 (218)
T PF05724_consen 132 ---EMRERYAQ-----------QLASLLKPGGRGLLITLEYPQGE---------------------------------ME 164 (218)
T ss_dssp ---GGHHHHHH-----------HHHHCEEEEEEEEEEEEES-CSC---------------------------------SS
T ss_pred ---HHHHHHHH-----------HHHHHhCCCCcEEEEEEEcCCcC---------------------------------CC
Confidence 34566666 44688999999666555322110 11
Q ss_pred cCcccCCHHHHHHHHHhcCceEEEEEEEEe
Q 017514 261 IPQYTPSPAEIKSEVIKEGSFTIDHLEVSE 290 (370)
Q Consensus 261 ~P~y~~s~eE~~~~ie~~GsF~i~~le~~~ 290 (370)
-|=|.-+.+||++.+. .+ |+|+.++..+
T Consensus 165 GPPf~v~~~ev~~l~~-~~-f~i~~l~~~~ 192 (218)
T PF05724_consen 165 GPPFSVTEEEVRELFG-PG-FEIEELEEED 192 (218)
T ss_dssp SSS----HHHHHHHHT-TT-EEEEEEEEEE
T ss_pred CcCCCCCHHHHHHHhc-CC-cEEEEEeccc
Confidence 3556678999999999 44 9999999854
No 140
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.59 E-value=4.8 Score=36.89 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=85.7
Q ss_pred hHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHH
Q 017514 32 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLAS 111 (370)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~ 111 (370)
+++.||+...++... .+.-.+|+|||||--|-.+.+.+. |...++..|+- |.
T Consensus 28 LlDaLekd~~eL~~~---~~~i~lEIG~GSGvvstfL~~~i~--------------~~~~~latDiN-----------p~ 79 (209)
T KOG3191|consen 28 LLDALEKDAAELKGH---NPEICLEIGCGSGVVSTFLASVIG--------------PQALYLATDIN-----------PE 79 (209)
T ss_pred HHHHHHHHHHHHhhc---CceeEEEecCCcchHHHHHHHhcC--------------CCceEEEecCC-----------HH
Confidence 567777777766432 267789999999977666653322 34777888874 33
Q ss_pred HHHHHHHhhCCCCCCCCceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHH-
Q 017514 112 FQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYY- 190 (370)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~- 190 (370)
-...-+..... +.+-+--|--|+..-|-+ +|+|+..= .|+.+....+.|- ......||+
T Consensus 80 A~~~Tl~TA~~-----n~~~~~~V~tdl~~~l~~-~~VDvLvf---------NPPYVpt~~~~i~-----~~~i~~a~aG 139 (209)
T KOG3191|consen 80 ALEATLETARC-----NRVHIDVVRTDLLSGLRN-ESVDVLVF---------NPPYVPTSDEEIG-----DEGIASAWAG 139 (209)
T ss_pred HHHHHHHHHHh-----cCCccceeehhHHhhhcc-CCccEEEE---------CCCcCcCCcccch-----hHHHHHHHhc
Confidence 22221111000 112233355577666667 88887542 3665553222221 123445565
Q ss_pred -HHHHHHHHHHHHHHHHhhccCceEEEEeeccC
Q 017514 191 -EQFQRDFSLFLKCRSEELVAEGRMVLTFLGRK 222 (370)
Q Consensus 191 -~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~ 222 (370)
+--++=..+||..--.-|.|-|.+.+...-++
T Consensus 140 G~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 140 GKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred CcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 44555577888888888999999999887654
No 141
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=90.28 E-value=0.74 Score=45.82 Aligned_cols=105 Identities=21% Similarity=0.313 Sum_probs=67.3
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCc
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (370)
+.-+|+|.|||+|-.|+... +. |. -.|+.-| ++.+. ....++.+.++- .
T Consensus 60 ~dK~VlDVGcGtGILS~F~a--------kA----GA----~~V~aVe-----~S~ia----~~a~~iv~~N~~------~ 108 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAA--------KA----GA----RKVYAVE-----ASSIA----DFARKIVKDNGL------E 108 (346)
T ss_pred CCCEEEEcCCCccHHHHHHH--------Hh----Cc----ceEEEEe-----chHHH----HHHHHHHHhcCc------c
Confidence 45789999999999998777 32 31 2333332 23333 222333332232 1
Q ss_pred eEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017514 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~ 209 (370)
--+--+.|.-.+-.+|...||+++|=|-=+||-. +.=|...|-+|-+=|+
T Consensus 109 ~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~------------------------------EsMldsVl~ARdkwL~ 158 (346)
T KOG1499|consen 109 DVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLY------------------------------ESMLDSVLYARDKWLK 158 (346)
T ss_pred ceEEEeecceEEEecCccceeEEeehhhhHHHHH------------------------------hhhhhhhhhhhhhccC
Confidence 2344466677677778899999999887777543 2234457889999999
Q ss_pred cCceEE
Q 017514 210 AEGRMV 215 (370)
Q Consensus 210 ~GG~lv 215 (370)
|||.++
T Consensus 159 ~~G~i~ 164 (346)
T KOG1499|consen 159 EGGLIY 164 (346)
T ss_pred CCceEc
Confidence 999985
No 142
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=90.17 E-value=0.72 Score=41.26 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=54.8
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCc
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (370)
...+|+|+|||+|--++.+... . ..-.|+++|++. +...+..+-. .++... ...
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~--------~-------~~~~Vv~TD~~~-----~l~~l~~Ni~----~N~~~~--~~~ 98 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKL--------F-------GAARVVLTDYNE-----VLELLRRNIE----LNGSLL--DGR 98 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT----------------T-SEEEEEE-S------HHHHHHHHHH----TT---------
T ss_pred CCceEEEECCccchhHHHHHhc--------c-------CCceEEEeccch-----hhHHHHHHHH----hccccc--ccc
Confidence 4579999999999888766621 1 237899999873 3333332211 111000 012
Q ss_pred eEEee--cCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017514 130 CFFTG--VPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEE 207 (370)
Q Consensus 130 ~f~~~--vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~E 207 (370)
+-+.. .+.......+.++++|+++.+=++.+ + +.+..+++.-..=
T Consensus 99 v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~----~-----------------------------~~~~~L~~tl~~l 145 (173)
T PF10294_consen 99 VSVRPLDWGDELDSDLLEPHSFDVILASDVLYD----E-----------------------------ELFEPLVRTLKRL 145 (173)
T ss_dssp -EEEE--TTS-HHHHHHS-SSBSEEEEES--S-----G-----------------------------GGHHHHHHHHHHH
T ss_pred ccCcEEEecCcccccccccccCCEEEEecccch----H-----------------------------HHHHHHHHHHHHH
Confidence 22221 22222233345566777776666654 1 1222355556778
Q ss_pred hccCceEEEEeeccC
Q 017514 208 LVAEGRMVLTFLGRK 222 (370)
Q Consensus 208 L~~GG~lvl~~~g~~ 222 (370)
|.++|.+++...-|.
T Consensus 146 l~~~~~vl~~~~~R~ 160 (173)
T PF10294_consen 146 LKPNGKVLLAYKRRR 160 (173)
T ss_dssp BTT-TTEEEEEE-S-
T ss_pred hCCCCEEEEEeCEec
Confidence 899999777776663
No 143
>PHA03412 putative methyltransferase; Provisional
Probab=90.08 E-value=2.1 Score=40.67 Aligned_cols=36 Identities=11% Similarity=0.112 Sum_probs=24.4
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCC
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLP 98 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp 98 (370)
..+|+|+|||+|..++.+. ++.. ..+..+|+.-|+-
T Consensus 50 ~grVLDlG~GSG~Lalala--------~~~~----~~~~~~V~aVEID 85 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMV--------HMMM----YAKPREIVCVELN 85 (241)
T ss_pred CCEEEEccChHHHHHHHHH--------Hhcc----cCCCcEEEEEECC
Confidence 4699999999998877655 2210 1124678877874
No 144
>PRK03612 spermidine synthase; Provisional
Probab=89.61 E-value=2.6 Score=44.43 Aligned_cols=21 Identities=19% Similarity=0.086 Sum_probs=16.4
Q ss_pred CCceEEEeecCCCCcchHHHH
Q 017514 49 PTKVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 49 ~~~~~IaD~Gcs~G~Ns~~~~ 69 (370)
+++-+|+|+|||+|..+..++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll 316 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVL 316 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHH
Confidence 456799999999998665444
No 145
>PLN02366 spermidine synthase
Probab=89.28 E-value=2.3 Score=41.83 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=16.1
Q ss_pred CCCceEEEeecCCCCcchHHH
Q 017514 48 SPTKVAIADLGCSSGPNTLLV 68 (370)
Q Consensus 48 ~~~~~~IaD~Gcs~G~Ns~~~ 68 (370)
.+++-+|+++|||.|.....+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rel 109 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREI 109 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHH
Confidence 356789999999999864433
No 146
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=88.85 E-value=1.6 Score=43.29 Aligned_cols=60 Identities=13% Similarity=0.260 Sum_probs=41.5
Q ss_pred eEEeecCCCcccccC-----CCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017514 130 CFFTGVPGSFYGRLF-----PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR 204 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~-----p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~R 204 (370)
.|++| -+|+++|. ++-++|++=|=+|+|+-=. +. +-...+|+.-
T Consensus 175 ~f~~~--Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFe-----------------te------------e~ar~~l~Nv 223 (389)
T KOG1975|consen 175 VFIAA--DCFKERLMDLLEFKDPRFDIVSCQFAFHYAFE-----------------TE------------ESARIALRNV 223 (389)
T ss_pred EEEEe--ccchhHHHHhccCCCCCcceeeeeeeEeeeec-----------------cH------------HHHHHHHHHH
Confidence 45444 56665542 3445999999999998221 11 1123478889
Q ss_pred HHhhccCceEEEEeec
Q 017514 205 SEELVAEGRMVLTFLG 220 (370)
Q Consensus 205 a~EL~~GG~lvl~~~g 220 (370)
++-|+|||.|+-+++.
T Consensus 224 a~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 224 AKCLKPGGVFIGTIPD 239 (389)
T ss_pred HhhcCCCcEEEEecCc
Confidence 9999999999999874
No 147
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=88.03 E-value=0.66 Score=44.56 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=17.6
Q ss_pred ceEEEeecCCCCcchHHHHH
Q 017514 51 KVAIADLGCSSGPNTLLVAS 70 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~ 70 (370)
.-+|+|+|||+|..|..+..
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~ 62 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLE 62 (272)
T ss_pred cCeEEEeCCCccHHHHHHHH
Confidence 46899999999999998875
No 148
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=87.57 E-value=12 Score=35.31 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=24.5
Q ss_pred hHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHH
Q 017514 32 AKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 32 ~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~ 69 (370)
.-|.|.+.+..+.. +..-||++.|||.|.+...+.
T Consensus 28 pnp~L~~~~~~l~~---~~~~rvLvPgCGkg~D~~~LA 62 (226)
T PRK13256 28 PNEFLVKHFSKLNI---NDSSVCLIPMCGCSIDMLFFL 62 (226)
T ss_pred CCHHHHHHHHhcCC---CCCCeEEEeCCCChHHHHHHH
Confidence 34556555554332 234699999999999988777
No 149
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=87.20 E-value=2.1 Score=37.68 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=16.7
Q ss_pred ceEEEeecCCCCcchHHHH
Q 017514 51 KVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~ 69 (370)
.-+|+|+|||+|..|..++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~ 32 (169)
T smart00650 14 GDTVLEIGPGKGALTEELL 32 (169)
T ss_pred cCEEEEECCCccHHHHHHH
Confidence 3589999999999998776
No 150
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=87.15 E-value=1 Score=43.18 Aligned_cols=82 Identities=22% Similarity=0.261 Sum_probs=56.3
Q ss_pred CceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeccCCCCC
Q 017514 147 NSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQDP 226 (370)
Q Consensus 147 ~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~~~ 226 (370)
...|.+.|++||.=.++-+ +.|. +=|+.-+.-|||||.|++...-..+.
T Consensus 157 ~~~D~v~s~fcLE~a~~d~---------------------~~y~--------~al~ni~~lLkpGG~Lil~~~l~~t~-- 205 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDL---------------------DEYR--------RALRNISSLLKPGGHLILAGVLGSTY-- 205 (256)
T ss_dssp SSEEEEEEESSHHHH-SSH---------------------HHHH--------HHHHHHHTTEEEEEEEEEEEESS-SE--
T ss_pred cchhhhhhhHHHHHHcCCH---------------------HHHH--------HHHHHHHHHcCCCcEEEEEEEcCcee--
Confidence 3599999999998866632 2233 35667788999999999988743321
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHhcCceEEEEEE
Q 017514 227 SSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIKEGSFTIDHLE 287 (370)
Q Consensus 227 ~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~~GsF~i~~le 287 (370)
+ || | .-.+|.+.-+.+.++++|+++| |.|+..+
T Consensus 206 Y-----------------~v--G--------~~~F~~l~l~ee~v~~al~~aG-~~i~~~~ 238 (256)
T PF01234_consen 206 Y-----------------MV--G--------GHKFPCLPLNEEFVREALEEAG-FDIEDLE 238 (256)
T ss_dssp E-----------------EE--T--------TEEEE---B-HHHHHHHHHHTT-EEEEEEE
T ss_pred E-----------------EE--C--------CEecccccCCHHHHHHHHHHcC-CEEEecc
Confidence 1 11 1 1237888899999999999999 9998888
No 151
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=85.13 E-value=4.2 Score=38.18 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=25.3
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLP 98 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp 98 (370)
++-+|+|+||++|.-++.+. ... ++.-+|+.-|..
T Consensus 68 ~~~~vLEiGt~~G~s~l~la--------~~~------~~~g~v~tiD~d 102 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTA--------LAL------PEDGRITAIDID 102 (234)
T ss_pred CCCEEEEecCcccHHHHHHH--------HhC------CCCCEEEEEECC
Confidence 46799999999999888665 221 134678887775
No 152
>PRK01581 speE spermidine synthase; Validated
Probab=84.90 E-value=6.4 Score=39.79 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=15.6
Q ss_pred HHHHHHHHhhccCceEEEE
Q 017514 199 LFLKCRSEELVAEGRMVLT 217 (370)
Q Consensus 199 ~fL~~Ra~EL~~GG~lvl~ 217 (370)
.|++.-.+-|+|||+|++.
T Consensus 249 EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 249 ELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHHHHHHHhcCCCcEEEEe
Confidence 3667777889999999887
No 153
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=84.35 E-value=2.5 Score=41.27 Aligned_cols=42 Identities=17% Similarity=0.292 Sum_probs=25.0
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLP 98 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp 98 (370)
+++||-.-|||+|-=.-.+.--+.+.+. ...-.++|+-.|+-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~-------~~~~~~~I~atDIs 156 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLG-------TAPGRWKVFASDID 156 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhc-------ccCCCcEEEEEECC
Confidence 4699999999999433222211222221 11125899999985
No 154
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=84.33 E-value=11 Score=34.54 Aligned_cols=44 Identities=23% Similarity=0.427 Sum_probs=23.2
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCC
Q 017514 49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLP 98 (370)
Q Consensus 49 ~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp 98 (370)
.+++||-..|||+|-=.-.+.--+-+... +...-.++++-+|+-
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~------~~~~~~~~I~atDi~ 73 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLP------GALGWDFRILATDIS 73 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-------S-TT-SEEEEEEES-
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhc------ccCCCceEEEEEECC
Confidence 46899999999999543322211222111 111225999999984
No 155
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=83.99 E-value=14 Score=37.71 Aligned_cols=27 Identities=11% Similarity=-0.057 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhhccCceEEEEee
Q 017514 193 FQRDFSLFLKCRSEELVAEGRMVLTFL 219 (370)
Q Consensus 193 ~~~D~~~fL~~Ra~EL~~GG~lvl~~~ 219 (370)
..+++..++..=.+=|+|||.+++...
T Consensus 314 ~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 314 ACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 455677777777788999999987653
No 156
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=83.80 E-value=27 Score=33.78 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=28.3
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLP 98 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp 98 (370)
+++||--.|||+|-=.-.+.-.+.+.... ..+..++|+.+|+-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~------~~~~~~~I~AtDId 138 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGK------LAGFRVKILATDID 138 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhcc------ccCCceEEEEEECC
Confidence 68999999999996544333333333321 12335999999984
No 157
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=82.79 E-value=2 Score=36.95 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=26.2
Q ss_pred HHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHH
Q 017514 30 SIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 30 ~~~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~ 69 (370)
+.+..++...++... ....+.+|+|+|||.|..|+.+.
T Consensus 7 ~~~~~~i~~~~~~~~--~~~~~~~vvD~GsG~GyLs~~La 44 (141)
T PF13679_consen 7 ERMAELIDSLCDSVG--ESKRCITVVDLGSGKGYLSRALA 44 (141)
T ss_pred HHHHHHHHHHHHHhh--ccCCCCEEEEeCCChhHHHHHHH
Confidence 344555555554331 23467999999999999999777
No 158
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=82.12 E-value=7 Score=36.80 Aligned_cols=146 Identities=16% Similarity=0.174 Sum_probs=79.4
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHhhcc---cCCCC--ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEe
Q 017514 20 SNSLVQEKVISIAKPITEEAMTKLFC---STSPT--KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFL 94 (370)
Q Consensus 20 ~nS~~Q~~~~~~~~~~l~~ai~~~~~---~~~~~--~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~ 94 (370)
+....|+..+..-.|.+-.--..... ...+. .-.++|+|||.|.-.+... ++ .|+.-++-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A--------~~-------nP~~nfiG 77 (227)
T COG0220 13 RLTKAQKNALEDNWPRLGLDPQEEPGDWSALFGNNNAPIVLEIGFGMGEFLVEMA--------KK-------NPEKNFLG 77 (227)
T ss_pred cccHHHHHHHHhcccccCCChhhccchHHHHhCCCCCcEEEEECCCCCHHHHHHH--------HH-------CCCCCEEE
Confidence 45566666665544433222111000 00122 2589999999998766444 32 25555555
Q ss_pred CCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCceEEeec-CCCcccccCCCCceeEEEeccccccccCCCCCccCCCc
Q 017514 95 NDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQCFFTGV-PGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKG 173 (370)
Q Consensus 95 nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~f~~~v-pgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~ 173 (370)
-+.- .+.+-+.+.. . .+.+. .++.+.=. ..-+...++|++|||=++=++.=-| |+.-- +|.
T Consensus 78 iEi~---~~~v~~~l~k----~-~~~~l-----~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPW----pKkRH-~KR 139 (227)
T COG0220 78 IEIR---VPGVAKALKK----I-KELGL-----KNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPW----PKKRH-HKR 139 (227)
T ss_pred EEEe---hHHHHHHHHH----H-HHcCC-----CcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCC----CCccc-ccc
Confidence 5543 1222222221 1 11122 13333321 1234466778889999999988888 54211 444
Q ss_pred eeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEe
Q 017514 174 NIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLTF 218 (370)
Q Consensus 174 ~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~ 218 (370)
+|- .+ .||+.=++-|+|||.+.+..
T Consensus 140 Rl~----~~----------------~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 140 RLT----QP----------------EFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred ccC----CH----------------HHHHHHHHHccCCCEEEEEe
Confidence 442 22 28888899999999998875
No 159
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=81.63 E-value=8 Score=42.35 Aligned_cols=116 Identities=14% Similarity=0.128 Sum_probs=61.5
Q ss_pred eEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhh-CCCCCCCCce
Q 017514 52 VAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GSASGAAGQC 130 (370)
Q Consensus 52 ~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~-~~~~~~~~~~ 130 (370)
-+|+|+||++|..|+.+. .. | .-+|+.-|+- +...+..++.. .+++...+--
T Consensus 540 ~rVLDlf~gtG~~sl~aa--------~~----G----a~~V~~vD~s-----------~~al~~a~~N~~~ng~~~~~v~ 592 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAA--------LG----G----AKSTTTVDMS-----------NTYLEWAERNFALNGLSGRQHR 592 (702)
T ss_pred CeEEEcCCCCCHHHHHHH--------HC----C----CCEEEEEeCC-----------HHHHHHHHHHHHHhCCCccceE
Confidence 589999999999998766 21 1 1357778875 22222111111 0111000123
Q ss_pred EEeecCCCcccccC-CCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017514 131 FFTGVPGSFYGRLF-PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (370)
Q Consensus 131 f~~~vpgSFy~~l~-p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~ 209 (370)
|+.+ +.++-+- ..+++|++++. |+.....+. ...+ ....+|+..++..=.+-|+
T Consensus 593 ~i~~---D~~~~l~~~~~~fDlIilD---------PP~f~~~~~--------~~~~-----~~~~~~y~~l~~~a~~lL~ 647 (702)
T PRK11783 593 LIQA---DCLAWLKEAREQFDLIFID---------PPTFSNSKR--------MEDS-----FDVQRDHVALIKDAKRLLR 647 (702)
T ss_pred EEEc---cHHHHHHHcCCCcCEEEEC---------CCCCCCCCc--------cchh-----hhHHHHHHHHHHHHHHHcC
Confidence 4333 5433110 15678988875 554332110 0011 1234566667777678899
Q ss_pred cCceEEEEee
Q 017514 210 AEGRMVLTFL 219 (370)
Q Consensus 210 ~GG~lvl~~~ 219 (370)
|||.+++...
T Consensus 648 ~gG~l~~~~~ 657 (702)
T PRK11783 648 PGGTLYFSNN 657 (702)
T ss_pred CCCEEEEEeC
Confidence 9999887653
No 160
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=80.97 E-value=9.7 Score=36.51 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhccCceEEEE
Q 017514 195 RDFSLFLKCRSEELVAEGRMVLT 217 (370)
Q Consensus 195 ~D~~~fL~~Ra~EL~~GG~lvl~ 217 (370)
+.+.+||+.-++-|.|||+||+.
T Consensus 186 ~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 186 DGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred HHHHHHHHHHHHhhCcCcEEEEc
Confidence 46888999999999999999984
No 161
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=79.46 E-value=5.5 Score=39.49 Aligned_cols=78 Identities=8% Similarity=0.071 Sum_probs=42.2
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhh-CC-CCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQL-GS-ASGAA 127 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~-~~-~~~~~ 127 (370)
...+|+|+|||+|....++. .+ .+..+++..|+- +.....-.... .+ .+ .
T Consensus 114 ~~~~vLDIGtGag~I~~lLa--------~~-------~~~~~~~atDId-----------~~Al~~A~~Nv~~Np~l--~ 165 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIG--------VH-------EYGWRFVGSDID-----------PQALASAQAIISANPGL--N 165 (321)
T ss_pred CCceEEEecCCccHHHHHHH--------hh-------CCCCEEEEEeCC-----------HHHHHHHHHHHHhccCC--c
Confidence 46899999999995544433 22 134678888874 21111111100 11 11 0
Q ss_pred Cce--EEeecCCCccccc-CCCCceeEEEec
Q 017514 128 GQC--FFTGVPGSFYGRL-FPRNSVHLFHSS 155 (370)
Q Consensus 128 ~~~--f~~~vpgSFy~~l-~p~~sv~~~~S~ 155 (370)
..+ .....++.++..+ .|.+.+|+++|+
T Consensus 166 ~~I~~~~~~~~~~i~~~i~~~~~~fDlivcN 196 (321)
T PRK11727 166 GAIRLRLQKDSKAIFKGIIHKNERFDATLCN 196 (321)
T ss_pred CcEEEEEccchhhhhhcccccCCceEEEEeC
Confidence 122 2234455555555 367899999996
No 162
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=78.13 E-value=2.7 Score=39.55 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=17.2
Q ss_pred CceEEEeecCCCCcchHHHH
Q 017514 50 TKVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~ 69 (370)
+.-+++|+|||+|..|..++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~ 94 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCAL 94 (228)
T ss_pred CCCEEEEcccCCCHHHHHHH
Confidence 34689999999999998776
No 163
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=78.04 E-value=19 Score=33.23 Aligned_cols=133 Identities=22% Similarity=0.199 Sum_probs=64.1
Q ss_pred HhHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhH
Q 017514 31 IAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLA 110 (370)
Q Consensus 31 ~~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~ 110 (370)
++..++...+..... +...-+|+|||||.|..-..+. +. | |-.+|.+-|++.=.=.|.
T Consensus 50 riv~wl~d~~~~~rv--~~~A~~VlDLGtGNG~~L~~L~--------~e----g--------f~~~L~GvDYs~~AV~LA 107 (227)
T KOG1271|consen 50 RIVDWLKDLIVISRV--SKQADRVLDLGTGNGHLLFQLA--------KE----G--------FQSKLTGVDYSEKAVELA 107 (227)
T ss_pred HHHHHHHhhhhhhhh--cccccceeeccCCchHHHHHHH--------Hh----c--------CCCCccccccCHHHHHHH
Confidence 344555555441111 2223399999999996433222 22 1 234588888886555553
Q ss_pred HHHHHHHHhhCCCCCCCCceEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHH
Q 017514 111 SFQKILRKQLGSASGAAGQCFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYY 190 (370)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~ 190 (370)
.+.. +..+-.- .--|-.. +....=+-++..|+++-=-++.=+|=-|..... |-.+ |
T Consensus 108 ~niA---e~~~~~n---~I~f~q~---DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~-r~~~-------------Y- 163 (227)
T KOG1271|consen 108 QNIA---ERDGFSN---EIRFQQL---DITDPDFLSGQFDLVLDKGTLDAISLSPDGPVG-RLVV-------------Y- 163 (227)
T ss_pred HHHH---HhcCCCc---ceeEEEe---eccCCcccccceeEEeecCceeeeecCCCCccc-ceee-------------e-
Confidence 3211 1111100 0122222 222222334456666555555444444543321 1122 2
Q ss_pred HHHHHHHHHHHHHHHHhhccCceEEEEee
Q 017514 191 EQFQRDFSLFLKCRSEELVAEGRMVLTFL 219 (370)
Q Consensus 191 ~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~ 219 (370)
+-.-.+-|+|||+|+++-+
T Consensus 164 ----------~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 164 ----------LDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred ----------hhhHhhccCCCcEEEEEec
Confidence 2233678999999999864
No 164
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=76.99 E-value=3.3 Score=40.52 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=14.7
Q ss_pred eEEEeecCCCCcchHHHH
Q 017514 52 VAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 52 ~~IaD~Gcs~G~Ns~~~~ 69 (370)
-+|+|+|||||-.++...
T Consensus 163 ~~vLDvG~GSGILaiaA~ 180 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAA 180 (295)
T ss_dssp SEEEEES-TTSHHHHHHH
T ss_pred CEEEEeCCcHHHHHHHHH
Confidence 599999999998888665
No 165
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=76.87 E-value=4.5 Score=41.92 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=16.5
Q ss_pred CceEEEeecCCCCcchHHHHHH
Q 017514 50 TKVAIADLGCSSGPNTLLVASE 71 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ 71 (370)
+..+|+|+|||+|+.+...++.
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A 207 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQA 207 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHT
T ss_pred cceEEEEeCCCccHHHHHHHHH
Confidence 3589999999999998877643
No 166
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=76.85 E-value=12 Score=36.01 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=16.9
Q ss_pred CceEEEeecCCCCcchHHHH
Q 017514 50 TKVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~ 69 (370)
+..+++|+|+|+|.-|..+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~ 113 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA 113 (265)
T ss_pred cCCceEEecCCCcHHHHHHH
Confidence 56889999999998887654
No 167
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=76.79 E-value=3.5 Score=40.40 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=16.5
Q ss_pred ceEEEeecCCCCcchHHHH
Q 017514 51 KVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~ 69 (370)
.-+|+|+|||+|..++.+.
T Consensus 174 ~~~VLDl~cG~G~~sl~la 192 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCA 192 (315)
T ss_pred CCEEEEccCCCCHHHHHHH
Confidence 3689999999999988766
No 168
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=75.74 E-value=1.7 Score=39.89 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=15.9
Q ss_pred ceEEEeecCCCCcchHHHH
Q 017514 51 KVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~ 69 (370)
.-+|+|+|||+|..++...
T Consensus 46 g~~V~DlG~GTG~La~ga~ 64 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAA 64 (198)
T ss_pred CCEEEEcCCCcCHHHHHHH
Confidence 4579999999999988654
No 169
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=75.00 E-value=1.8 Score=42.54 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=17.2
Q ss_pred CceEEEeecCCCCcchHHHH
Q 017514 50 TKVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~ 69 (370)
+..+++|+|||||-.|+...
T Consensus 162 ~g~~vlDvGcGSGILaIAa~ 181 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAA 181 (300)
T ss_pred CCCEEEEecCChhHHHHHHH
Confidence 56899999999998888665
No 170
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=74.74 E-value=7.3 Score=38.04 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=33.7
Q ss_pred ceEEEeecCCCCcchHHHHHH------------HHHHHHHHHHhcCCCCCcceEEeCCCCCCch
Q 017514 51 KVAIADLGCSSGPNTLLVASE------------LIKVVNKICDKLGSQLPEFQVFLNDLPGNDF 102 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~------------ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDF 102 (370)
.-+|+|+|||.|..|..++.. .++.+++++...+. .+.++++..|....|+
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~-~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL-ASKLEVIEGDALKTEF 99 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC-CCcEEEEECCHhhhcc
Confidence 468999999999999988753 45666655432221 2347788877654443
No 171
>PRK04148 hypothetical protein; Provisional
Probab=72.92 E-value=12 Score=32.42 Aligned_cols=19 Identities=16% Similarity=0.018 Sum_probs=14.1
Q ss_pred CceEEEeecCCCCc-chHHH
Q 017514 50 TKVAIADLGCSSGP-NTLLV 68 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~-Ns~~~ 68 (370)
+..+|+|+|||.|. .+..+
T Consensus 16 ~~~kileIG~GfG~~vA~~L 35 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKL 35 (134)
T ss_pred cCCEEEEEEecCCHHHHHHH
Confidence 34789999999997 44333
No 172
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=72.20 E-value=6 Score=37.57 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=17.6
Q ss_pred ceEEEeecCCCCcchHHHHH
Q 017514 51 KVAIADLGCSSGPNTLLVAS 70 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~ 70 (370)
.-+|+|+|||.|..|..+..
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~ 49 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAK 49 (258)
T ss_pred cCeEEEEeCccCHHHHHHHH
Confidence 46899999999999998874
No 173
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=72.07 E-value=35 Score=33.04 Aligned_cols=64 Identities=28% Similarity=0.335 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHH
Q 017514 195 RDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSE 274 (370)
Q Consensus 195 ~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ 274 (370)
+++..+|..-.+=|||||. .++ +| |.. +-+. ++ + + -+-.....|.||++.+
T Consensus 179 ~Ni~~Yi~tI~~lLkpgG~-WIN-~G-----PLl----yh~~-------~~---~-~-------~~~~sveLs~eEi~~l 229 (270)
T PF07942_consen 179 ENIIEYIETIEHLLKPGGY-WIN-FG-----PLL----YHFE-------PM---S-I-------PNEMSVELSLEEIKEL 229 (270)
T ss_pred HHHHHHHHHHHHHhccCCE-EEe-cC-----Ccc----ccCC-------CC---C-C-------CCCcccCCCHHHHHHH
Confidence 4566689999999999993 333 32 210 0011 00 0 0 0011266789999999
Q ss_pred HHhcCceEEEEEEE
Q 017514 275 VIKEGSFTIDHLEV 288 (370)
Q Consensus 275 ie~~GsF~i~~le~ 288 (370)
+++-| |++++-+.
T Consensus 230 ~~~~G-F~~~~~~~ 242 (270)
T PF07942_consen 230 IEKLG-FEIEKEES 242 (270)
T ss_pred HHHCC-CEEEEEEE
Confidence 99999 99988776
No 174
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=72.06 E-value=4 Score=37.51 Aligned_cols=18 Identities=22% Similarity=0.025 Sum_probs=15.3
Q ss_pred eEEEeecCCCCcchHHHH
Q 017514 52 VAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 52 ~~IaD~Gcs~G~Ns~~~~ 69 (370)
.+++|+|||+|..++.++
T Consensus 55 ~~vLDl~~GsG~l~l~~l 72 (199)
T PRK10909 55 ARCLDCFAGSGALGLEAL 72 (199)
T ss_pred CEEEEcCCCccHHHHHHH
Confidence 589999999998887544
No 175
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=71.74 E-value=25 Score=36.70 Aligned_cols=128 Identities=16% Similarity=0.215 Sum_probs=64.8
Q ss_pred ceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCce
Q 017514 51 KVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQC 130 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~~ 130 (370)
..+|+|++||.|.-|..+. ... + ..-.|+.||.-.+=...|-+.+. ..|- .++
T Consensus 114 g~~VLD~CAAPGgKTt~la--------~~l---~---~~g~lvA~D~~~~R~~~L~~nl~--------r~G~-----~nv 166 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIA--------ALM---N---NQGAIVANEYSASRVKVLHANIS--------RCGV-----SNV 166 (470)
T ss_pred CCEEEEeCCCccHHHHHHH--------HHc---C---CCCEEEEEeCCHHHHHHHHHHHH--------HcCC-----CeE
Confidence 4699999999999998765 221 1 12478888875333333333322 1232 233
Q ss_pred EEee-cCCCcccccCCCCceeEEE----eccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 131 FFTG-VPGSFYGRLFPRNSVHLFH----SSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS 205 (370)
Q Consensus 131 f~~~-vpgSFy~~l~p~~sv~~~~----S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra 205 (370)
-+.- =+..+ ...+| +++|.|. ||-.=.|- +-|+... ..++..+.+--..| ..+|..=+
T Consensus 167 ~v~~~D~~~~-~~~~~-~~fD~ILvDaPCSG~G~~r-k~p~~~~---------~~s~~~v~~l~~lQ-----~~iL~~A~ 229 (470)
T PRK11933 167 ALTHFDGRVF-GAALP-ETFDAILLDAPCSGEGTVR-KDPDALK---------NWSPESNLEIAATQ-----RELIESAF 229 (470)
T ss_pred EEEeCchhhh-hhhch-hhcCeEEEcCCCCCCcccc-cCHHHhh---------hCCHHHHHHHHHHH-----HHHHHHHH
Confidence 2221 11111 22222 3455554 33222222 1232111 12333343333333 34788888
Q ss_pred HhhccCceEEEEeeccC
Q 017514 206 EELVAEGRMVLTFLGRK 222 (370)
Q Consensus 206 ~EL~~GG~lvl~~~g~~ 222 (370)
+-|+|||+||-+.+.-.
T Consensus 230 ~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 230 HALKPGGTLVYSTCTLN 246 (470)
T ss_pred HHcCCCcEEEEECCCCC
Confidence 89999999988877543
No 176
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=68.39 E-value=5.6 Score=35.25 Aligned_cols=51 Identities=20% Similarity=0.102 Sum_probs=31.9
Q ss_pred HHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCC
Q 017514 36 TEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGN 100 (370)
Q Consensus 36 l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~N 100 (370)
|.++..+...-...+..+++|+|||.|.-|-.++ ++. .+.-.|+--|+...
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~--------~~~------~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLL--------QRG------GPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHH--------TST------TTEEEEEEEESSST
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeee--------ecc------cccceEEEEecccc
Confidence 4444444331112367999999999999988777 221 13477888888644
No 177
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=67.63 E-value=6.7 Score=37.03 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=17.2
Q ss_pred CceEEEeecCCCCcchHHHH
Q 017514 50 TKVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~ 69 (370)
+.-+|+|+|||.|..|..+.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~ 48 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLL 48 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHH
Confidence 34689999999999888776
No 178
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=64.96 E-value=7.6 Score=38.86 Aligned_cols=153 Identities=22% Similarity=0.326 Sum_probs=83.1
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCc
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (370)
.--.++|.|||+|..|+...+. |. -.||.-.- .++...-.++.. ++.+ .
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA------------GA----~~vYAvEA---------S~MAqyA~~Lv~--~N~~----~ 225 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA------------GA----KKVYAVEA---------SEMAQYARKLVA--SNNL----A 225 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh------------Cc----ceEEEEeh---------hHHHHHHHHHHh--cCCc----c
Confidence 3467899999999999987721 21 22222221 011221122221 2221 2
Q ss_pred eEEeecCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017514 130 CFFTGVPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELV 209 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~ 209 (370)
--+..+||-. +.+=-|+.+|+++|- |-+- +-+ -++=+.++|.+| +=|+
T Consensus 226 ~rItVI~GKi-EdieLPEk~DviISE---------PMG~------mL~---------------NERMLEsYl~Ar-k~l~ 273 (517)
T KOG1500|consen 226 DRITVIPGKI-EDIELPEKVDVIISE---------PMGY------MLV---------------NERMLESYLHAR-KWLK 273 (517)
T ss_pred ceEEEccCcc-ccccCchhccEEEec---------cchh------hhh---------------hHHHHHHHHHHH-hhcC
Confidence 3456688888 666666778887762 4321 111 125577889999 9999
Q ss_pred cCceEEEEeeccCCCCCCCchhh--------hHHH------HHHHHHHHHHhcCCcchhhhccCCcCcccC
Q 017514 210 AEGRMVLTFLGRKSQDPSSKECC--------YIWE------LLATALNNMVSEGLIEEEKVNCFNIPQYTP 266 (370)
Q Consensus 210 ~GG~lvl~~~g~~~~~~~~~~~~--------~~~~------~l~~al~~mv~eG~i~~e~~d~f~~P~y~~ 266 (370)
|.|.|+=++ |+=..-|.+.|.- ++|- .=-..|.--+-+|..++--+|.|.+-+...
T Consensus 274 P~GkMfPT~-gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~RilmA 343 (517)
T KOG1500|consen 274 PNGKMFPTV-GDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILMA 343 (517)
T ss_pred CCCcccCcc-cceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceeec
Confidence 999997665 3333334443311 1111 001123333345677777788887766553
No 179
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=63.77 E-value=1.6e+02 Score=29.44 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHH
Q 017514 195 RDFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSE 274 (370)
Q Consensus 195 ~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ 274 (370)
+....+|..-.+-|||||..+=. | |.. |. + +++-..-+-+....|.|++..+
T Consensus 273 ~NileYi~tI~~iLk~GGvWiNl--G-----PLl------YH-F--------------~d~~g~~~~~siEls~edl~~v 324 (369)
T KOG2798|consen 273 HNILEYIDTIYKILKPGGVWINL--G-----PLL------YH-F--------------EDTHGVENEMSIELSLEDLKRV 324 (369)
T ss_pred HHHHHHHHHHHHhccCCcEEEec--c-----cee------ee-c--------------cCCCCCcccccccccHHHHHHH
Confidence 44556899999999999986522 2 210 00 0 0000112567788899999999
Q ss_pred HHhcCceEEEEEEEEeec
Q 017514 275 VIKEGSFTIDHLEVSEVN 292 (370)
Q Consensus 275 ie~~GsF~i~~le~~~~~ 292 (370)
.+.-| |++++-+.++..
T Consensus 325 ~~~~G-F~~~ke~~Idt~ 341 (369)
T KOG2798|consen 325 ASHRG-FEVEKERGIDTT 341 (369)
T ss_pred HHhcC-cEEEEeeeeecc
Confidence 99889 999988877543
No 180
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=61.96 E-value=6.5 Score=37.41 Aligned_cols=67 Identities=10% Similarity=0.199 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHH
Q 017514 196 DFSLFLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEV 275 (370)
Q Consensus 196 D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~i 275 (370)
++..++-.-+.-|+|||.|.++.=..+..+. | .+.. .--|..+..=|++.+
T Consensus 203 ~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~--------f-~l~p--------------------s~RyAH~~~YVr~~l 253 (287)
T COG4976 203 ALEGLFAGAAGLLAPGGLFAFSVETLPDDGG--------F-VLGP--------------------SQRYAHSESYVRALL 253 (287)
T ss_pred chhhHHHHHHHhcCCCceEEEEecccCCCCC--------e-ecch--------------------hhhhccchHHHHHHH
Confidence 3445677779999999999998754333210 0 0111 112677788889999
Q ss_pred HhcCceEEEEEEEEeec
Q 017514 276 IKEGSFTIDHLEVSEVN 292 (370)
Q Consensus 276 e~~GsF~i~~le~~~~~ 292 (370)
+..| |+|..++-..+.
T Consensus 254 ~~~G-l~~i~~~~ttiR 269 (287)
T COG4976 254 AASG-LEVIAIEDTTIR 269 (287)
T ss_pred HhcC-ceEEEeecccch
Confidence 9999 998888865444
No 181
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=61.17 E-value=47 Score=32.03 Aligned_cols=136 Identities=15% Similarity=0.234 Sum_probs=62.5
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCc
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (370)
...+|+|-.||+|..-+..+..+.+.-.+ .+..+++-.|+- ........+.- +.. +.. ..
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~--------~~~~~i~G~ei~--~~~~~la~~nl----~l~--~~~----~~ 105 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNK--------IKEINIYGIEID--PEAVALAKLNL----LLH--GID----NS 105 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHH--------HCCEEEEEEES---HHHHHHHHHHH----HHT--THH----CB
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccc--------cccceeEeecCc--HHHHHHHHhhh----hhh--ccc----cc
Confidence 45789999999998766555444333111 145888877772 22211111110 111 110 11
Q ss_pred eEEeecCCCcccccCC-CCceeEEEec--cccc-cccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 130 CFFTGVPGSFYGRLFP-RNSVHLFHSS--YSLQ-WLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRS 205 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~p-~~sv~~~~S~--~alh-Wls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra 205 (370)
..-...+-+|-..... ...+|+++++ +... |-.. ....+. -|.....+.. ..|+ .|+..--
T Consensus 106 ~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~---~~~~~~--~~~~~~~~~~---------~~~~-~Fi~~~l 170 (311)
T PF02384_consen 106 NINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDE---ELEKDE--RFKKYFPPKS---------NAEY-AFIEHAL 170 (311)
T ss_dssp GCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STG---GGCTTC--CCTTCSSSTT---------EHHH-HHHHHHH
T ss_pred cccccccccccccccccccccccccCCCCccccccccc---cccccc--cccccCCCcc---------chhh-hhHHHHH
Confidence 1111122334344443 5789999886 2222 4111 111100 0100000100 0122 2888888
Q ss_pred HhhccCceEEEEeec
Q 017514 206 EELVAEGRMVLTFLG 220 (370)
Q Consensus 206 ~EL~~GG~lvl~~~g 220 (370)
+-|++||+++++++.
T Consensus 171 ~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 171 SLLKPGGRAAIILPN 185 (311)
T ss_dssp HTEEEEEEEEEEEEH
T ss_pred hhcccccceeEEecc
Confidence 999999999999873
No 182
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=61.06 E-value=54 Score=31.29 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=14.4
Q ss_pred ceEEEeecCCCCcchHHHH
Q 017514 51 KVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~ 69 (370)
--+|+|-|.|||..|..+.
T Consensus 41 G~~VlEaGtGSG~lt~~l~ 59 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALA 59 (247)
T ss_dssp T-EEEEE--TTSHHHHHHH
T ss_pred CCEEEEecCCcHHHHHHHH
Confidence 4799999999999999777
No 183
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=60.32 E-value=11 Score=38.79 Aligned_cols=19 Identities=37% Similarity=0.380 Sum_probs=16.3
Q ss_pred ceEEEeecCCCCcchHHHH
Q 017514 51 KVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~ 69 (370)
..+|+|+|||+|..|+.+.
T Consensus 298 ~~~VLDlgcGtG~~sl~la 316 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLA 316 (443)
T ss_pred CCEEEEEeccCCHHHHHHH
Confidence 3689999999999888765
No 184
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=59.02 E-value=17 Score=33.56 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=28.4
Q ss_pred ceEEEeecCCCCcchHHHH---------------------HHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHH
Q 017514 51 KVAIADLGCSSGPNTLLVA---------------------SELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNT 104 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~---------------------~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFnt 104 (370)
.-++.|+|||.|.-.+.+. ....+.+++++...|..+..+++..-|.-.+||..
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~ 117 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVK 117 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHh
Confidence 4699999999998755322 12233333444444544456777777776555443
No 185
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=57.20 E-value=31 Score=32.33 Aligned_cols=93 Identities=22% Similarity=0.226 Sum_probs=61.7
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCCc
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAGQ 129 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~~ 129 (370)
..++++|+||=+..|.+.. + +.|.|..-||- +. +..+ ..
T Consensus 51 ~~lrlLEVGals~~N~~s~-----------~-------~~fdvt~IDLn-----------s~---------~~~I---~q 89 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACST-----------S-------GWFDVTRIDLN-----------SQ---------HPGI---LQ 89 (219)
T ss_pred ccceEEeecccCCCCcccc-----------c-------CceeeEEeecC-----------CC---------CCCc---ee
Confidence 5699999999999886621 1 34778888884 21 1000 01
Q ss_pred eEEeecCCCcccccC---CCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017514 130 CFFTGVPGSFYGRLF---PRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSE 206 (370)
Q Consensus 130 ~f~~~vpgSFy~~l~---p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~ 206 (370)
-+|.++=+ +++++|++..|--|.+ ||.... + -.-|+.-.+
T Consensus 90 -------qDFm~rplp~~~~e~FdvIs~SLVLNf---VP~p~~------------R---------------G~Ml~r~~~ 132 (219)
T PF11968_consen 90 -------QDFMERPLPKNESEKFDVISLSLVLNF---VPDPKQ------------R---------------GEMLRRAHK 132 (219)
T ss_pred -------eccccCCCCCCcccceeEEEEEEEEee---CCCHHH------------H---------------HHHHHHHHH
Confidence 16666644 4778999999999888 674211 0 113555567
Q ss_pred hhccCce-----EEEEeec
Q 017514 207 ELVAEGR-----MVLTFLG 220 (370)
Q Consensus 207 EL~~GG~-----lvl~~~g 220 (370)
=|+|+|. |+++++-
T Consensus 133 fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 133 FLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred HhCCCCccCcceEEEEeCc
Confidence 7899999 8888874
No 186
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=53.79 E-value=14 Score=33.48 Aligned_cols=18 Identities=17% Similarity=-0.020 Sum_probs=16.2
Q ss_pred eEEEeecCCCCcchHHHH
Q 017514 52 VAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 52 ~~IaD~Gcs~G~Ns~~~~ 69 (370)
-+++|++||+|..++.++
T Consensus 51 ~~vLDLfaGsG~lglea~ 68 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEAL 68 (189)
T ss_pred CEEEEecCCCcHHHHHHH
Confidence 689999999999988777
No 187
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=53.30 E-value=15 Score=35.04 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=24.5
Q ss_pred HHHHHHHhhcccCCCCceEEEeecCCCCcchHHHH
Q 017514 35 ITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 35 ~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~ 69 (370)
-|+.|+..... ..+-.+++|+|+|+|..|.-++
T Consensus 66 KL~~ale~F~l--~~k~kv~LDiGsSTGGFTd~lL 98 (245)
T COG1189 66 KLEKALEEFEL--DVKGKVVLDIGSSTGGFTDVLL 98 (245)
T ss_pred HHHHHHHhcCc--CCCCCEEEEecCCCccHHHHHH
Confidence 35556655433 3566899999999999998777
No 188
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=51.98 E-value=20 Score=36.08 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=15.9
Q ss_pred eEEEeecCCCCcchHHHH
Q 017514 52 VAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 52 ~~IaD~Gcs~G~Ns~~~~ 69 (370)
-+|+|+|||+|..|+.+.
T Consensus 235 ~~vLDL~cG~G~~~l~la 252 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCA 252 (374)
T ss_pred CEEEEccCCccHHHHHHh
Confidence 489999999999988766
No 189
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=51.13 E-value=1.5e+02 Score=28.40 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=13.7
Q ss_pred CceEEEeecCCCCcchH
Q 017514 50 TKVAIADLGCSSGPNTL 66 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~ 66 (370)
.+.+|+|+|||.|.-+.
T Consensus 33 ~P~~vLD~GsGpGta~w 49 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALW 49 (274)
T ss_pred CCceEEEecCChHHHHH
Confidence 56799999999996443
No 190
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=49.09 E-value=23 Score=36.20 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=16.6
Q ss_pred ceEEEeecCCCCcchHHHH
Q 017514 51 KVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~ 69 (370)
.-+|+|+|||+|..|+.+.
T Consensus 293 ~~~vLDl~cG~G~~sl~la 311 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLA 311 (431)
T ss_pred CCEEEEcCCCcCHHHHHHH
Confidence 3689999999999998765
No 191
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=48.88 E-value=17 Score=34.87 Aligned_cols=77 Identities=23% Similarity=0.441 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHH--------------HHHHHHHHHHHHhcCCCCCcceEEeCCCC
Q 017514 33 KPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVA--------------SELIKVVNKICDKLGSQLPEFQVFLNDLP 98 (370)
Q Consensus 33 ~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~--------------~~ii~~i~~~~~~~~~~~p~i~v~~nDlp 98 (370)
+|.|++....+... .+.+-+|+|+|||-=|.++..+ +.+++.+.......+ +...+-+-|+-
T Consensus 89 l~~Ld~fY~~if~~-~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~---~~~~~~v~Dl~ 164 (251)
T PF07091_consen 89 LPNLDEFYDEIFGR-IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG---VPHDARVRDLL 164 (251)
T ss_dssp GGGHHHHHHHHCCC-S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT----CEEEEEE-TT
T ss_pred hhhHHHHHHHHHhc-CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC---CCcceeEeeee
Confidence 34444444444332 3458999999999988888443 345555554433333 45777777887
Q ss_pred CC------chHHHHHhhHHHH
Q 017514 99 GN------DFNTIFRSLASFQ 113 (370)
Q Consensus 99 ~N------DFntLF~~l~~~~ 113 (370)
++ |=..|||.+|-..
T Consensus 165 ~~~~~~~~DlaLllK~lp~le 185 (251)
T PF07091_consen 165 SDPPKEPADLALLLKTLPCLE 185 (251)
T ss_dssp TSHTTSEESEEEEET-HHHHH
T ss_pred ccCCCCCcchhhHHHHHHHHH
Confidence 76 7888999998754
No 192
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=48.47 E-value=16 Score=30.65 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhccCceEEEEe
Q 017514 195 RDFSLFLKCRSEELVAEGRMVLTF 218 (370)
Q Consensus 195 ~D~~~fL~~Ra~EL~~GG~lvl~~ 218 (370)
..+.+||+.-++-|+|||+|+|.-
T Consensus 21 ~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 21 EGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred HHHHHHHHHHHHhhCCCCEEEEeC
Confidence 568889999999999999999974
No 193
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=48.02 E-value=37 Score=36.21 Aligned_cols=72 Identities=25% Similarity=0.453 Sum_probs=43.2
Q ss_pred eeecCCCCHHHHHH------HHHHHHHHHHHHHHHHHHhhccCceEEEEeeccCCCC-CCCchhhhHHHHHH-------H
Q 017514 175 IFMASTSPPCVLTA------YYEQFQRDFSLFLKCRSEELVAEGRMVLTFLGRKSQD-PSSKECCYIWELLA-------T 240 (370)
Q Consensus 175 i~~~~~s~~~v~~a------y~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~~~g~~~~~-~~~~~~~~~~~~l~-------~ 240 (370)
||+...+|++|.+| |++||++|.-.=|.|-.+ -|..+-+ |.- ++-.||.-+. .
T Consensus 390 iHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRr------------wgHnelddp~f-tspvmyk~v~aReSvPdl 456 (913)
T KOG0451|consen 390 IHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRR------------WGHNELDDPTF-TSPVMYKEVEARESVPDL 456 (913)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHH------------hccccccCccc-cChhHHHHHHhhhcccHH
Confidence 77888889988774 899999984333332211 2333222 321 1112443332 2
Q ss_pred HHHHHHhcCCcchhhhccC
Q 017514 241 ALNNMVSEGLIEEEKVNCF 259 (370)
Q Consensus 241 al~~mv~eG~i~~e~~d~f 259 (370)
-...|++||++++|++-.+
T Consensus 457 ya~~L~~eg~~tee~vkE~ 475 (913)
T KOG0451|consen 457 YAQQLAKEGVLTEEKVKEM 475 (913)
T ss_pred HHHHHHhcccccHHHHHHH
Confidence 3567899999999988654
No 194
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=46.09 E-value=21 Score=25.56 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhcCCcchhh
Q 017514 234 IWELLATALNNMVSEGLIEEEK 255 (370)
Q Consensus 234 ~~~~l~~al~~mv~eG~i~~e~ 255 (370)
+=..|.++|.+|+.+|.|+++-
T Consensus 11 lG~aL~dtLDeli~~~~I~p~L 32 (49)
T PF02268_consen 11 LGIALTDTLDELIQEGKITPQL 32 (49)
T ss_dssp HHHHHHHHHHHHHHTTSS-HHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHH
Confidence 4467999999999999999873
No 195
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=45.85 E-value=22 Score=28.07 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHH
Q 017514 234 IWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVI 276 (370)
Q Consensus 234 ~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie 276 (370)
+...+..+|+.|-..|.|+++|-|....|.+.|+. ..+.+|+
T Consensus 12 l~~~V~~~Ld~ll~~G~is~~Ecd~Ir~p~~T~sq-qARrLLD 53 (81)
T cd08788 12 LQHHVDGALELLLTRGFFSSYDCDEIRLPIFTPSQ-QARRLLD 53 (81)
T ss_pred HHHHHHHHHHHHHHcCCccHhhcchhhcCCCChHH-HHHHHHH
Confidence 45678899999999999999999999999998864 4555554
No 196
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=45.20 E-value=15 Score=33.33 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCH
Q 017514 234 IWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSP 268 (370)
Q Consensus 234 ~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~ 268 (370)
+...+.+.|.+||++|+|+-|+.-+-|+=|-|+|.
T Consensus 41 Vl~tVKd~lQqlVDDgvV~~EK~GtsN~YWsF~s~ 75 (209)
T COG5124 41 VLMTVKDLLQQLVDDGVVSVEKCGTSNIYWSFKSQ 75 (209)
T ss_pred HHHHHHHHHHHHhhcCceeeeeeccceeEEecchH
Confidence 55678999999999999999999999999998864
No 197
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=45.02 E-value=12 Score=31.27 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=14.8
Q ss_pred CceEEEeecCCCCcchHHHH
Q 017514 50 TKVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~ 69 (370)
+....+|+|||.|-..-++.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~ 77 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILN 77 (112)
T ss_pred CCCceEEccCCchHHHHHHH
Confidence 56789999999995544333
No 198
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=43.58 E-value=18 Score=23.03 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCcchhhhcc
Q 017514 240 TALNNMVSEGLIEEEKVNC 258 (370)
Q Consensus 240 ~al~~mv~eG~i~~e~~d~ 258 (370)
..|.+|-+.|.||++|+..
T Consensus 6 ~~L~~l~~~G~IseeEy~~ 24 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQ 24 (31)
T ss_pred HHHHHHHHcCCCCHHHHHH
Confidence 4578888999999999863
No 199
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=43.02 E-value=30 Score=33.29 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=39.9
Q ss_pred ceEEEeecCCCCcchHHHHHH------------HHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHH
Q 017514 51 KVAIADLGCSSGPNTLLVASE------------LIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIF 106 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~~~~~------------ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF 106 (370)
.-+|+++|+|.|..|..+++. ++..++++. .....++|++.|--.=||..|+
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~----~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERF----APYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhc----ccccceEEEeCchhcCcchhhc
Confidence 579999999999999988864 445555542 1234699999999888888764
No 200
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=42.17 E-value=29 Score=34.95 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhhccc-----CCCCceEEEeecCCCCcchHHHH
Q 017514 32 AKPITEEAMTKLFCS-----TSPTKVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 32 ~~~~l~~ai~~~~~~-----~~~~~~~IaD~Gcs~G~Ns~~~~ 69 (370)
+.=.|++++...... ....-.+++|+|||.|.-|-.++
T Consensus 188 s~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~ 230 (357)
T PRK11760 188 STLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLV 230 (357)
T ss_pred HHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHH
Confidence 444567776655422 12345799999999999998776
No 201
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=41.90 E-value=59 Score=32.88 Aligned_cols=54 Identities=15% Similarity=0.072 Sum_probs=38.9
Q ss_pred cCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCceE
Q 017514 135 VPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRM 214 (370)
Q Consensus 135 vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~l 214 (370)
+-+.|-+..|++++.|++.+.-+.+.+.+ + .++|++++ +.++|||+.
T Consensus 165 ~~~~~~~~~fedn~fd~v~~ld~~~~~~~-~--------------------~~~y~Ei~------------rv~kpGG~~ 211 (364)
T KOG1269|consen 165 VVADFGKMPFEDNTFDGVRFLEVVCHAPD-L--------------------EKVYAEIY------------RVLKPGGLF 211 (364)
T ss_pred ehhhhhcCCCCccccCcEEEEeecccCCc-H--------------------HHHHHHHh------------cccCCCceE
Confidence 44588888999999999998888777443 1 24444433 449999999
Q ss_pred EEEeecc
Q 017514 215 VLTFLGR 221 (370)
Q Consensus 215 vl~~~g~ 221 (370)
+..-..+
T Consensus 212 i~~e~i~ 218 (364)
T KOG1269|consen 212 IVKEWIK 218 (364)
T ss_pred EeHHHHH
Confidence 9875544
No 202
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=40.28 E-value=17 Score=30.46 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=14.4
Q ss_pred EEEeecCCCCcchHHHH
Q 017514 53 AIADLGCSSGPNTLLVA 69 (370)
Q Consensus 53 ~IaD~Gcs~G~Ns~~~~ 69 (370)
+|+|+||+.|..|+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~ 17 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFA 17 (143)
T ss_pred CEEEccCCccHHHHHHH
Confidence 48999999998887665
No 203
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.26 E-value=18 Score=32.95 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHH
Q 017514 235 WELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPA 269 (370)
Q Consensus 235 ~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~e 269 (370)
--.+++++..||+||+|..|++-+-|+=|-||+.+
T Consensus 29 ~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~ 63 (188)
T PF03962_consen 29 SMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQA 63 (188)
T ss_pred hhhHHHHHHHHhccccchhhhccCeeEEEecChHH
Confidence 34689999999999999999999999999999754
No 204
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=37.52 E-value=17 Score=34.07 Aligned_cols=17 Identities=41% Similarity=0.696 Sum_probs=13.9
Q ss_pred ceEEEeecCCCCcchHH
Q 017514 51 KVAIADLGCSSGPNTLL 67 (370)
Q Consensus 51 ~~~IaD~Gcs~G~Ns~~ 67 (370)
-.-+||+|||=|...+.
T Consensus 61 kvefaDIGCGyGGLlv~ 77 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMK 77 (249)
T ss_pred cceEEeeccCccchhhh
Confidence 37899999999977553
No 205
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=35.70 E-value=40 Score=31.64 Aligned_cols=50 Identities=28% Similarity=0.582 Sum_probs=30.1
Q ss_pred cCCCcccccCCCCceeEEEeccccccccCCCCCccCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 017514 135 VPGSFYGRLFPRNSVHLFHSSYSLQWLSQVPDGLESNKGNIFMASTSPPCVLTAYYEQFQRDFSLFLKCR 204 (370)
Q Consensus 135 vpgSFy~~l~p~~sv~~~~S~~alhWls~~P~~~~~nk~~i~~~~~s~~~v~~ay~~Q~~~D~~~fL~~R 204 (370)
-||.+|+..||.+-+- +|+.|.+ +-|-+...++ +-.+|..+|..+||.=-
T Consensus 133 ~~~~~~N~~fpg~~ia-------------MP~~L~~--~~v~y~dGt~-----at~~q~a~DVv~FL~w~ 182 (219)
T PF02167_consen 133 RPGGYYNPYFPGGAIA-------------MPPPLSD--GQVEYDDGTP-----ATVDQMAKDVVNFLAWA 182 (219)
T ss_dssp STTSEEETTSTTSEES-------------S--TSST--TSS-BTTTB--------HHHHHHHHHHHHHHH
T ss_pred CCCCccccccCCCccc-------------chhhhhh--hcccccCCCc-----chHHHHHHHHHHHHHHH
Confidence 5788889999876543 3666654 2333333333 34689999999999743
No 206
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=35.35 E-value=35 Score=25.39 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=23.8
Q ss_pred ccCCcCcccCCHHHHHHHHH----hcCceEEEEEE
Q 017514 257 NCFNIPQYTPSPAEIKSEVI----KEGSFTIDHLE 287 (370)
Q Consensus 257 d~f~~P~y~~s~eE~~~~ie----~~GsF~i~~le 287 (370)
.+|-+|+|..|.||-...-+ +.| |.|.++.
T Consensus 25 ~sfEVPV~A~SLeeA~e~AE~~Y~~aG-f~VtRiR 58 (63)
T PHA00457 25 QSFEVPVYAKSLEEATELAEWQYVPAG-FVVTRIR 58 (63)
T ss_pred ceEEeeeecccHHHHHHHHHHhhhccC-cEEEEec
Confidence 47889999999999887766 346 8887764
No 207
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=34.81 E-value=16 Score=24.06 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=8.9
Q ss_pred CcccCCHHHHHHHHH
Q 017514 262 PQYTPSPAEIKSEVI 276 (370)
Q Consensus 262 P~y~~s~eE~~~~ie 276 (370)
|.+.||.+|++.++.
T Consensus 1 Pvf~Pt~eEF~dp~~ 15 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIK 15 (34)
T ss_dssp EEE---HHHHS-HHH
T ss_pred CcccCCHHHHhCHHH
Confidence 788999999988753
No 208
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=34.06 E-value=81 Score=30.93 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHhhccCceEEEEee
Q 017514 193 FQRDFSLFLKCRSEELVAEGRMVLTFL 219 (370)
Q Consensus 193 ~~~D~~~fL~~Ra~EL~~GG~lvl~~~ 219 (370)
==.-+..+|..=.+-|+|||+|++..+
T Consensus 211 El~~L~~~L~~~~~~L~~gGrl~visf 237 (296)
T PRK00050 211 ELEELERALEAALDLLKPGGRLAVISF 237 (296)
T ss_pred hHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 334588999999999999999999887
No 209
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=33.93 E-value=49 Score=33.58 Aligned_cols=63 Identities=14% Similarity=0.060 Sum_probs=40.7
Q ss_pred CCCCchhHhhhHHHHHHHHHhHHHHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcce
Q 017514 12 GVGGTSYASNSLVQEKVISIAKPITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQ 91 (370)
Q Consensus 12 g~G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~ 91 (370)
..++-.|+-|...-+.+...+...+.. ..+..+|+|++||+|.-++.+. ... +.-+
T Consensus 28 ~~~~vFyqp~~~~nrdl~~~v~~~~~~---------~~~~~~vLDl~aGsG~~~l~~a--------~~~-------~~~~ 83 (382)
T PRK04338 28 SWAPVFYNPRMELNRDISVLVLRAFGP---------KLPRESVLDALSASGIRGIRYA--------LET-------GVEK 83 (382)
T ss_pred CCCCeeeCccccchhhHHHHHHHHHHh---------hcCCCEEEECCCcccHHHHHHH--------HHC-------CCCE
Confidence 335678988887776655544443321 1123689999999999998775 211 1246
Q ss_pred EEeCCCC
Q 017514 92 VFLNDLP 98 (370)
Q Consensus 92 v~~nDlp 98 (370)
|+.+|.-
T Consensus 84 V~a~Din 90 (382)
T PRK04338 84 VTLNDIN 90 (382)
T ss_pred EEEEeCC
Confidence 8899984
No 210
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=33.79 E-value=52 Score=32.87 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=15.1
Q ss_pred EEEeecCCCCcchHHHH
Q 017514 53 AIADLGCSSGPNTLLVA 69 (370)
Q Consensus 53 ~IaD~Gcs~G~Ns~~~~ 69 (370)
+++|+|||+|..|+.+.
T Consensus 200 ~vlDl~~G~G~~sl~la 216 (353)
T TIGR02143 200 DLLELYCGNGNFSLALA 216 (353)
T ss_pred cEEEEeccccHHHHHHH
Confidence 69999999999999555
No 211
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=32.67 E-value=29 Score=30.85 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=14.3
Q ss_pred CceEEEeecCCCCcchH
Q 017514 50 TKVAIADLGCSSGPNTL 66 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~ 66 (370)
+-.+++|+||+.|-.++
T Consensus 48 Egkkl~DLgcgcGmLs~ 64 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSI 64 (185)
T ss_pred cCcchhhhcCchhhhHH
Confidence 45789999999998774
No 212
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=32.54 E-value=62 Score=29.21 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHHHh
Q 017514 233 YIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEVIK 277 (370)
Q Consensus 233 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~ie~ 277 (370)
..|+-|-+-++.|+++|.|+++..+ +.....+++|+-+.|++
T Consensus 136 g~~~~l~~~l~~~~~~gfi~~~~~~---~~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 136 GHFDGLVEWLKYSIQEGFISESHLK---LIHVVSRPDELIEQVQN 177 (178)
T ss_pred chHHHHHHHHHHHHHCCCCCHHHcC---cEEEcCCHHHHHHHHHh
Confidence 3689999999999999999998776 44568899999888764
No 213
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=32.36 E-value=53 Score=34.47 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=26.6
Q ss_pred CceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCC
Q 017514 50 TKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLP 98 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp 98 (370)
...+|+|.|||+|...+.++..+.. . .+...-+..++.-|.-
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~----~---~~~~~~~~~i~g~DId 72 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEE----I---NYFKEVELNIYFADID 72 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHh----c---CCcccceeeeeeechh
Confidence 5689999999999987766644321 1 0111124677777764
No 214
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=31.34 E-value=58 Score=32.64 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=15.5
Q ss_pred eEEEeecCCCCcchHHHH
Q 017514 52 VAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 52 ~~IaD~Gcs~G~Ns~~~~ 69 (370)
-+++|++||+|..|+.+.
T Consensus 208 ~~vLDl~~G~G~~sl~la 225 (362)
T PRK05031 208 GDLLELYCGNGNFTLALA 225 (362)
T ss_pred CeEEEEeccccHHHHHHH
Confidence 469999999999999555
No 215
>PLN02823 spermine synthase
Probab=31.23 E-value=4e+02 Score=26.54 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=16.6
Q ss_pred CCCceEEEeecCCCCcchHHHH
Q 017514 48 SPTKVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 48 ~~~~~~IaD~Gcs~G~Ns~~~~ 69 (370)
.+++-+|+.+|+|.|.....++
T Consensus 101 ~~~pk~VLiiGgG~G~~~re~l 122 (336)
T PLN02823 101 HPNPKTVFIMGGGEGSTAREVL 122 (336)
T ss_pred CCCCCEEEEECCCchHHHHHHH
Confidence 3456799999999997665444
No 216
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=30.90 E-value=5.7e+02 Score=25.75 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=58.5
Q ss_pred CCceEEEeecCCCCcchHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCCCCCchHHHHHhhHHHHHHHHHhhCCCCCCCC
Q 017514 49 PTKVAIADLGCSSGPNTLLVASELIKVVNKICDKLGSQLPEFQVFLNDLPGNDFNTIFRSLASFQKILRKQLGSASGAAG 128 (370)
Q Consensus 49 ~~~~~IaD~Gcs~G~Ns~~~~~~ii~~i~~~~~~~~~~~p~i~v~~nDlp~NDFntLF~~l~~~~~~~~~~~~~~~~~~~ 128 (370)
.+.+.|+|||.+.|. -+..+|+++.++. ..+|.+.+.--+.|...-..-.+........+.+..|-.+
T Consensus 109 ~~~vHIID~~i~~G~----QW~~LiqaLa~R~----~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~f---- 176 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGV----QWPSLIQALASRP----GGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPF---- 176 (374)
T ss_pred CcceEEEeccCCcch----HHHHHHHHHhcCC----CCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccE----
Confidence 468999999999994 5667788887652 3467899999999766522222222221222223334321
Q ss_pred ceEEeecCCCccccc------CCCCceeEEEeccccccccCCCC
Q 017514 129 QCFFTGVPGSFYGRL------FPRNSVHLFHSSYSLQWLSQVPD 166 (370)
Q Consensus 129 ~~f~~~vpgSFy~~l------~p~~sv~~~~S~~alhWls~~P~ 166 (370)
-|-.-+-.+. +.+ .-++..=.|-|...||.|...|.
T Consensus 177 -ef~~v~~~~~-e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~ 218 (374)
T PF03514_consen 177 -EFHPVVVESL-EDLDPSMLRLRPGEALAVNCMFQLHHLLDESG 218 (374)
T ss_pred -EEEecccCch-hhCCHHHhCccCCcEEEEEeehhhhhhccccc
Confidence 2322112122 222 12255667778888888875443
No 217
>PF14904 FAM86: Family of unknown function
Probab=30.50 E-value=48 Score=27.30 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=25.5
Q ss_pred hhhhHhhhhhHHHHh--hChhHHHHHHHHHHHH
Q 017514 317 ANCMRAVAEPLLVSQ--FGEAIIDELFKRYREI 347 (370)
Q Consensus 317 a~~~RA~~epll~~h--fg~~i~Delf~r~~~~ 347 (370)
.++.|.|...+|..| .+.++.|+||+.|+..
T Consensus 67 ~kY~~~FLk~lI~k~Ea~~~EplDeLYealae~ 99 (100)
T PF14904_consen 67 VKYRRCFLKELIKKHEAVHCEPLDELYEALAEV 99 (100)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 467889999988854 5689999999999875
No 218
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.14 E-value=23 Score=31.78 Aligned_cols=25 Identities=16% Similarity=0.014 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhccCceEEEEeecc
Q 017514 197 FSLFLKCRSEELVAEGRMVLTFLGR 221 (370)
Q Consensus 197 ~~~fL~~Ra~EL~~GG~lvl~~~g~ 221 (370)
...+|+...+-|+|||.|-+.++..
T Consensus 65 g~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 65 GTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred HHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 4557888899999999999998743
No 219
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=27.14 E-value=39 Score=30.17 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=14.8
Q ss_pred EEEeecCCCCcchHHHH
Q 017514 53 AIADLGCSSGPNTLLVA 69 (370)
Q Consensus 53 ~IaD~Gcs~G~Ns~~~~ 69 (370)
+|+|.-||.|.||+.+.
T Consensus 2 ~vlD~fcG~GGNtIqFA 18 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFA 18 (163)
T ss_dssp EEEETT-TTSHHHHHHH
T ss_pred EEEEeccCcCHHHHHHH
Confidence 68999999999999877
No 220
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=27.00 E-value=60 Score=23.94 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCce
Q 017514 187 TAYYEQFQRDFSLFLKCRSEELVAEGR 213 (370)
Q Consensus 187 ~ay~~Q~~~D~~~fL~~Ra~EL~~GG~ 213 (370)
+.++.-|..||..++..+..+|+.-|+
T Consensus 13 ~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 13 EEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 567788889999999999999998775
No 221
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=26.70 E-value=80 Score=26.82 Aligned_cols=39 Identities=23% Similarity=0.588 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHH
Q 017514 234 IWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEV 275 (370)
Q Consensus 234 ~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~i 275 (370)
.|+-+-+-++.|+++|.|+++..+ +.....+++|+-+.|
T Consensus 95 ~w~~l~~~l~~~~~~g~i~~~~~~---~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 95 FWDPLLEFLDRMIEEGFISPDDLD---LLHFVDDPEEALEYI 133 (133)
T ss_dssp CCHHHHHHHHHHHHTTSSSHHHHC---CEEEESSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCCHHHCC---eEEEeCCHHHHHhhC
Confidence 577778888899999999999776 666788888887653
No 222
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=26.16 E-value=74 Score=27.34 Aligned_cols=89 Identities=19% Similarity=0.315 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEE-eeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhhc-cC
Q 017514 182 PPCVLTAYYEQFQRDFSLFLKCRSEELVAEGRMVLT-FLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKVN-CF 259 (370)
Q Consensus 182 ~~~v~~ay~~Q~~~D~~~fL~~Ra~EL~~GG~lvl~-~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d-~f 259 (370)
|..+.+.|.+||++||...|+.|..+=+..---|=. ...-.+... =.+.-|.-|..=..-|..+|++.-++-+ ..
T Consensus 10 ~~k~i~~yS~eFe~~Fl~lLr~~hg~krV~AN~vYnEyI~Dk~HvH---MNaT~W~sLT~FvkyLgr~G~~~Vdetekg~ 86 (127)
T PF10357_consen 10 PGKFIDEYSEEFEKDFLRLLRRRHGTKRVNANKVYNEYIQDKDHVH---MNATRWTSLTEFVKYLGREGKCKVDETEKGW 86 (127)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHTSS-EEEHHHHHHHHTTSS-------GGGSS-SSHHHHHHHHTTTTSEEEEEETTEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCeechhHHHHHHhcCcccee---ecccccchHHHHHHHHhhCCeeEeecCCCce
Confidence 446789999999999999999886543221000000 001111100 0112356666666677777777666655 44
Q ss_pred CcCcccCCHHHHHH
Q 017514 260 NIPQYTPSPAEIKS 273 (370)
Q Consensus 260 ~~P~y~~s~eE~~~ 273 (370)
.+-+.-++++.+..
T Consensus 87 ~I~yID~~pe~l~r 100 (127)
T PF10357_consen 87 FISYIDRSPETLAR 100 (127)
T ss_dssp EEEE--SSHHHHHH
T ss_pred EEEeeCCCHHHHHH
Confidence 55555566665543
No 223
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=26.15 E-value=61 Score=31.81 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=22.2
Q ss_pred HHHHHHhhcccCCCCceEEEeecCCCCcchHHHH
Q 017514 36 TEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 36 l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~ 69 (370)
+++.+..+.. .+ ..+++|.+||.|.-|..++
T Consensus 8 l~Evl~~L~~--~p-g~~vlD~TlG~GGhS~~il 38 (296)
T PRK00050 8 LDEVVDALAI--KP-DGIYVDGTFGGGGHSRAIL 38 (296)
T ss_pred HHHHHHhhCC--CC-CCEEEEeCcCChHHHHHHH
Confidence 4555554432 12 3589999999999999888
No 224
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=25.09 E-value=85 Score=29.49 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=14.9
Q ss_pred CceEEEeecCCCCcchHHHHH
Q 017514 50 TKVAIADLGCSSGPNTLLVAS 70 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~~ 70 (370)
.+++|+++|.|+|.++.-++.
T Consensus 18 ~~~~ivE~GaG~G~La~diL~ 38 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILR 38 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHH
T ss_pred cCcEEEEECCCchHHHHHHHH
Confidence 469999999999987654443
No 225
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=24.96 E-value=47 Score=22.89 Aligned_cols=16 Identities=31% Similarity=0.600 Sum_probs=13.9
Q ss_pred cCcccCCHHHHHHHHH
Q 017514 261 IPQYTPSPAEIKSEVI 276 (370)
Q Consensus 261 ~P~y~~s~eE~~~~ie 276 (370)
+|.+.||.+|++..+.
T Consensus 2 iPvf~Pt~eEF~Dp~~ 17 (42)
T smart00545 2 IPVFYPTMEEFKDPLA 17 (42)
T ss_pred CCeEcCCHHHHHCHHH
Confidence 6999999999998864
No 226
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=24.48 E-value=41 Score=31.04 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=17.3
Q ss_pred CceEEEeecCCCCcchHHHH
Q 017514 50 TKVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~ 69 (370)
++-+|+++||+.|.-|+.+.
T Consensus 45 ~~k~vLEIGt~~GySal~la 64 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLA 64 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHH
T ss_pred CCceEEEeccccccHHHHHH
Confidence 46799999999999999877
No 227
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=23.52 E-value=1.2e+02 Score=21.61 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCc
Q 017514 186 LTAYYEQFQRDFSLFLKCRSEELVAEG 212 (370)
Q Consensus 186 ~~ay~~Q~~~D~~~fL~~Ra~EL~~GG 212 (370)
.|.|-+.|++|-...|.+|.+-++..|
T Consensus 22 mkrycrafrqdrdallear~kl~~r~~ 48 (54)
T PF13260_consen 22 MKRYCRAFRQDRDALLEARNKLFRRSG 48 (54)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 478999999999999999999876544
No 228
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=23.22 E-value=87 Score=29.15 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=21.3
Q ss_pred HHHHHHHhhcccCCCCceEEEeecCCCCcchHHHHHH
Q 017514 35 ITEEAMTKLFCSTSPTKVAIADLGCSSGPNTLLVASE 71 (370)
Q Consensus 35 ~l~~ai~~~~~~~~~~~~~IaD~Gcs~G~Ns~~~~~~ 71 (370)
++.+||.+... -+.+|+|.|+|..|+.....
T Consensus 23 vF~~ai~~va~------d~~~DLGaGsGiLs~~Aa~~ 53 (252)
T COG4076 23 VFTSAIAEVAE------DTFADLGAGSGILSVVAAHA 53 (252)
T ss_pred HHHHHHHHHhh------hceeeccCCcchHHHHHHhh
Confidence 44555544332 46899999999999876643
No 229
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=23.13 E-value=1e+02 Score=28.59 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=16.9
Q ss_pred CceEEEeecCCCCcchHHHH
Q 017514 50 TKVAIADLGCSSGPNTLLVA 69 (370)
Q Consensus 50 ~~~~IaD~Gcs~G~Ns~~~~ 69 (370)
+--+|+|+||+-|.=|...+
T Consensus 69 p~~~VlD~G~APGsWsQVav 88 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAV 88 (232)
T ss_pred CCCEEEEccCCCChHHHHHH
Confidence 45899999999998887666
No 230
>PRK13699 putative methylase; Provisional
Probab=22.57 E-value=2e+02 Score=26.86 Aligned_cols=20 Identities=15% Similarity=-0.112 Sum_probs=15.6
Q ss_pred HHHHHHHHHhhccCceEEEE
Q 017514 198 SLFLKCRSEELVAEGRMVLT 217 (370)
Q Consensus 198 ~~fL~~Ra~EL~~GG~lvl~ 217 (370)
..+|+.-++-|+|||.|++.
T Consensus 52 ~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEE
Confidence 46677777899999988764
No 231
>PHA02734 coat protein; Provisional
Probab=22.30 E-value=68 Score=27.44 Aligned_cols=37 Identities=19% Similarity=0.360 Sum_probs=24.2
Q ss_pred cchHHHHHHHHHHHHHHH---HhcCCCCCcceEEeCCCCC
Q 017514 63 PNTLLVASELIKVVNKIC---DKLGSQLPEFQVFLNDLPG 99 (370)
Q Consensus 63 ~Ns~~~~~~ii~~i~~~~---~~~~~~~p~i~v~~nDlp~ 99 (370)
.|+-.++-.||++|++.. +..|..-.+..|||+..|.
T Consensus 49 e~~k~aIHeiIK~IreA~kp~rn~g~gfkeawvyfsqvpe 88 (149)
T PHA02734 49 ANAKAAIHAIIKMIKDAMKPLRNKGKGFKEAWVYFSQVPE 88 (149)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCchhHHHHhhhcCcc
Confidence 356788999999999874 2233333455677777663
No 232
>KOG3463 consensus Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=22.15 E-value=77 Score=26.36 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHH-HHHHHhcCceEEEEEEEEe
Q 017514 235 WELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEI-KSEVIKEGSFTIDHLEVSE 290 (370)
Q Consensus 235 ~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~-~~~ie~~GsF~i~~le~~~ 290 (370)
=..|.++|.||+.+|.|+++-.-. .+-.|--|+.|. ..-+++.=+|+ .++.++.
T Consensus 13 G~~L~~tLDe~v~~g~itp~la~~-VL~~FDKSi~~al~~~vk~kmsfk-g~L~tYr 67 (109)
T KOG3463|consen 13 GNALQKTLDELVSDGVITPSLAKK-VLEQFDKSINEALNDKVKNKMSFK-GKLDTYR 67 (109)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHHHHHHHHHhcccceeee-eccceee
Confidence 357999999999999999873221 111122222222 22223333588 7777764
No 233
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=21.73 E-value=2.3e+02 Score=21.56 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=27.1
Q ss_pred cCCCCcchHHHHHHHHHHHHHHH-HhcCCCCCcceEEeCCCC
Q 017514 58 GCSSGPNTLLVASELIKVVNKIC-DKLGSQLPEFQVFLNDLP 98 (370)
Q Consensus 58 Gcs~G~Ns~~~~~~ii~~i~~~~-~~~~~~~p~i~v~~nDlp 98 (370)
=|.-|+.+-..-..+++.+.+.. ...|.++..+.|+++|.|
T Consensus 7 k~~~g~~~~~~K~~la~~vT~~~~~~lg~~~~~i~Viieev~ 48 (69)
T COG1942 7 KLFEGRLDEEQKAELAAEVTEVTVETLGKDPSAIHVIIEEVP 48 (69)
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEecC
Confidence 34457777765555555555542 235666667999999998
No 234
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=21.63 E-value=1.9e+02 Score=27.90 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=29.1
Q ss_pred HHHHHHHhhccCceEEEEeeccCCCCCCCchhhhHHHHHHHHHHHHHhcCCcchhhh
Q 017514 200 FLKCRSEELVAEGRMVLTFLGRKSQDPSSKECCYIWELLATALNNMVSEGLIEEEKV 256 (370)
Q Consensus 200 fL~~Ra~EL~~GG~lvl~~~g~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~ 256 (370)
.|..-++.|+|||.+++..+. .+.+...+..|-+.|.+..+.+
T Consensus 177 ~le~~~~~Lkpgg~~~~y~P~--------------veQv~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 177 VLEHVSDALKPGGVVVVYSPT--------------VEQVEKTVEALRERGFVDIEAV 219 (256)
T ss_pred HHHHHHHHhCCCcEEEEEcCC--------------HHHHHHHHHHHHhcCccchhhh
Confidence 477779999999999988753 3455666655555565554433
No 235
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=20.58 E-value=1.1e+02 Score=22.11 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=22.7
Q ss_pred CcchHHHHHHHHHHHHHHHH-hcCCCCCcceEEeCCCC
Q 017514 62 GPNTLLVASELIKVVNKICD-KLGSQLPEFQVFLNDLP 98 (370)
Q Consensus 62 G~Ns~~~~~~ii~~i~~~~~-~~~~~~p~i~v~~nDlp 98 (370)
|+ |-.-...+++.|.+... ..+.++..+.|+++|.|
T Consensus 11 Gr-s~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~ 47 (60)
T PRK02289 11 GR-SQEQKNALAREVTEVVSRIAKAPKEAIHVFINDMP 47 (60)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeC
Confidence 54 45455555555555432 24556667999999998
No 236
>KOG4068 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.28 E-value=1.1e+02 Score=27.30 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhcCCcchhhhccCCcCcccCCHHHHHHHH----HhcC
Q 017514 235 WELLATALNNMVSEGLIEEEKVNCFNIPQYTPSPAEIKSEV----IKEG 279 (370)
Q Consensus 235 ~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~eE~~~~i----e~~G 279 (370)
-+.+..+|.+|.++|++..=+-..-.+-+|.++++|.-..| .+.|
T Consensus 68 ~~~i~~Il~~l~k~g~~e~~Dk~rt~f~I~Wrs~dewgnmIyqW~~dsg 116 (174)
T KOG4068|consen 68 QEFIDEILEELEKKGLAEPTDKRRTRFFIYWRSLDEWGNMIYQWVSDSG 116 (174)
T ss_pred HHHHHHHHHHHHHccCCcccccCceEEEEEEcCHHHHHHHHHHHHHHcC
Confidence 46788999999999998775444566788999999998775 5566
No 237
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=20.22 E-value=89 Score=22.50 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCCcchhhhc-cCCcCcccCCHHHHHHHHH
Q 017514 236 ELLATALNNMVSEGLIEEEKVN-CFNIPQYTPSPAEIKSEVI 276 (370)
Q Consensus 236 ~~l~~al~~mv~eG~i~~e~~d-~f~~P~y~~s~eE~~~~ie 276 (370)
+...+.|.+-..+|.|+.+|++ ....-+-..+..|+..++.
T Consensus 9 ~~~~~~L~~a~a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 9 ERAVDLLRAAFAEGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 3456677777799999999999 5556666778888877664
No 238
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=20.11 E-value=74 Score=29.10 Aligned_cols=36 Identities=28% Similarity=0.512 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHhcCCcchhhhccCCcCcccCCH
Q 017514 233 YIWELLATALNNMVSEGLIEEEKVNCFNIPQYTPSP 268 (370)
Q Consensus 233 ~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~~s~ 268 (370)
.+|....++|..||++|++..|++-.-|.=|-|||.
T Consensus 39 Iv~~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~ 74 (203)
T KOG3433|consen 39 IVWQTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSE 74 (203)
T ss_pred eehhHHHHHHHHHhccchHHHHHhcccccccccchH
Confidence 357788999999999999999999999988888874
Done!