Your job contains 1 sequence.
>017515
MNPESFTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHS
SYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHG
FYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD
LQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVD
GSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHEL
CGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMML
RALRESTYLC
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017515
(370 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2092409 - symbol:RTL2 "RNAse THREE-like protei... 991 7.1e-100 1
TAIR|locus:2153333 - symbol:RTL3 "RNAse THREE-like protei... 503 1.0e-55 2
UNIPROTKB|Q8LMR2 - symbol:DCL1 "Endoribonuclease Dicer ho... 522 1.3e-48 1
TAIR|locus:504955425 - symbol:RTL1 "RNAse II-like 1" spec... 394 1.3e-36 1
TAIR|locus:2149259 - symbol:DCL4 "dicer-like 4" species:3... 295 1.0e-32 2
UNIPROTKB|A7LFZ6 - symbol:DCL4 "Endoribonuclease Dicer ho... 295 2.5e-32 2
TAIR|locus:2097705 - symbol:DCL2 "dicer-like 2" species:3... 311 2.4e-26 1
FB|FBgn0039016 - symbol:Dcr-1 "Dicer-1" species:7227 "Dro... 284 3.3e-23 1
RGD|1309381 - symbol:Dicer1 "dicer 1, ribonuclease type I... 248 2.5e-19 1
UNIPROTKB|B3KRG4 - symbol:DICER1 "Endoribonuclease Dicer"... 253 4.4e-19 1
MGI|MGI:2177178 - symbol:Dicer1 "dicer 1, ribonuclease ty... 256 4.9e-19 2
UNIPROTKB|F1NJX0 - symbol:DICER1 "Endoribonuclease Dicer"... 254 1.0e-18 2
UNIPROTKB|Q25BN1 - symbol:DICER1 "Endoribonuclease Dicer"... 254 1.0e-18 2
UNIPROTKB|F1NP11 - symbol:DICER1 "Endoribonuclease Dicer"... 254 1.0e-18 2
UNIPROTKB|F1MCQ5 - symbol:DICER1 "Endoribonuclease Dicer"... 253 1.5e-18 2
UNIPROTKB|Q9UPY3 - symbol:DICER1 "Endoribonuclease Dicer"... 253 1.5e-18 2
UNIPROTKB|E2RIN4 - symbol:DICER1 "Uncharacterized protein... 253 1.5e-18 2
ZFIN|ZDB-GENE-030131-3445 - symbol:dicer1 "Dicer1, Dcr-1 ... 254 1.5e-18 2
UNIPROTKB|A0MQH0 - symbol:DICER1 "Endoribonuclease Dicer"... 252 2.1e-18 2
TIGR_CMR|ECH_1054 - symbol:ECH_1054 "ribonuclease III" sp... 158 3.8e-18 3
UNIPROTKB|E9PU15 - symbol:Dicer1 "Protein Dicer1" species... 250 4.0e-18 2
FB|FBgn0034246 - symbol:Dcr-2 "Dicer-2" species:7227 "Dro... 191 5.0e-18 2
UNIPROTKB|Q6TUI4 - symbol:DICER1 "Endoribonuclease Dicer"... 248 7.5e-18 2
UNIPROTKB|B3DLA6 - symbol:dicer1 "Endoribonuclease Dicer"... 246 1.1e-17 1
POMBASE|SPCC188.13c - symbol:dcr1 "dicer" species:4896 "S... 226 1.7e-15 1
TIGR_CMR|SO_1348 - symbol:SO_1348 "ribonuclease III" spec... 134 3.0e-15 3
TIGR_CMR|CJE_1807 - symbol:CJE_1807 "ribonuclease III" sp... 176 6.5e-13 1
TIGR_CMR|NSE_0918 - symbol:NSE_0918 "ribonuclease III" sp... 151 1.2e-12 2
TIGR_CMR|CHY_1444 - symbol:CHY_1444 "ribonuclease III" sp... 173 1.4e-12 1
TIGR_CMR|CBU_1503 - symbol:CBU_1503 "ribonuclease III" sp... 139 1.2e-11 3
UNIPROTKB|P0A7Y0 - symbol:rnc "RNase III" species:83333 "... 137 2.6e-11 2
TIGR_CMR|DET_1025 - symbol:DET_1025 "ribonuclease III" sp... 168 4.5e-11 1
TIGR_CMR|BA_3987 - symbol:BA_3987 "ribonuclease III" spec... 164 3.0e-10 1
TIGR_CMR|GSU_2228 - symbol:GSU_2228 "ribonuclease III" sp... 133 3.0e-10 3
UNIPROTKB|Q9KPB2 - symbol:rnc "Ribonuclease 3" species:24... 117 5.1e-09 2
TIGR_CMR|VC_2461 - symbol:VC_2461 "ribonuclease III" spec... 117 5.1e-09 2
TIGR_CMR|APH_1149 - symbol:APH_1149 "ribonuclease III" sp... 133 7.4e-09 2
TIGR_CMR|CPS_4122 - symbol:CPS_4122 "ribonuclease III" sp... 119 9.4e-09 2
UNIPROTKB|Q61XX9 - symbol:drsh-1 "Ribonuclease 3" species... 159 4.1e-08 1
WB|WBGene00000939 - symbol:dcr-1 species:6239 "Caenorhabd... 161 4.9e-08 1
FB|FBgn0026722 - symbol:drosha "drosha" species:7227 "Dro... 159 5.4e-08 1
TIGR_CMR|SPO_3198 - symbol:SPO_3198 "ribonuclease III" sp... 114 2.5e-07 3
ASPGD|ASPL0000041548 - symbol:dclB species:162425 "Emeric... 136 2.8e-07 2
POMBASE|SPBC119.11c - symbol:pac1 "double-strand-specific... 119 3.6e-07 2
UNIPROTKB|P66666 - symbol:rnc "Ribonuclease 3" species:17... 136 8.7e-07 1
CGD|CAL0001312 - symbol:DCR1 species:5476 "Candida albica... 115 4.7e-06 2
UNIPROTKB|Q5A694 - symbol:RNT1 "Probable ribonuclease III... 115 4.7e-06 2
WB|WBGene00009163 - symbol:drsh-1 species:6239 "Caenorhab... 124 2.6e-05 2
UNIPROTKB|O01326 - symbol:drsh-1 "Ribonuclease 3" species... 124 2.6e-05 2
UNIPROTKB|F1M2R2 - symbol:F1M2R2 "Uncharacterized protein... 123 5.0e-05 1
RGD|1307626 - symbol:Drosha "drosha, ribonuclease type II... 123 5.0e-05 1
ZFIN|ZDB-GENE-070209-23 - symbol:rnasen "ribonuclease typ... 127 0.00017 1
UNIPROTKB|F1PJL5 - symbol:DROSHA "Uncharacterized protein... 123 0.00019 1
UNIPROTKB|F1NQC9 - symbol:DROSHA "Uncharacterized protein... 126 0.00023 1
UNIPROTKB|I3L6Y9 - symbol:DICER1 "Uncharacterized protein... 125 0.00035 1
UNIPROTKB|F1LQY5 - symbol:F1LQY5 "Uncharacterized protein... 123 0.00035 1
UNIPROTKB|F1SP38 - symbol:DROSHA "Uncharacterized protein... 124 0.00037 1
UNIPROTKB|E1BGY0 - symbol:DROSHA "Uncharacterized protein... 124 0.00039 1
UNIPROTKB|A7TR32 - symbol:Kpol_455p11 "Putative uncharact... 109 0.00046 2
FB|FBgn0037716 - symbol:CG8273 species:7227 "Drosophila m... 121 0.00049 1
MGI|MGI:1261425 - symbol:Drosha "drosha, ribonuclease typ... 123 0.00050 1
UNIPROTKB|E9PTR3 - symbol:E9PTR3 "Uncharacterized protein... 123 0.00050 1
UNIPROTKB|Q9NRR4 - symbol:DROSHA "Ribonuclease 3" species... 123 0.00050 1
DICTYBASE|DDB_G0268410 - symbol:drnB "putative RNase III"... 122 0.00065 1
>TAIR|locus:2092409 [details] [associations]
symbol:RTL2 "RNAse THREE-like protein 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS;IMP]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005634 GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0016075
GO:GO:0006364 EMBL:AB024036 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 HSSP:O67082
EMBL:AY042815 EMBL:AY081681 IPI:IPI00517285 RefSeq:NP_566661.1
UniGene:At.8183 ProteinModelPortal:Q9LTQ0 SMR:Q9LTQ0 IntAct:Q9LTQ0
EnsemblPlants:AT3G20420.1 GeneID:821587 KEGG:ath:AT3G20420
TAIR:At3g20420 HOGENOM:HOG000237951 InParanoid:Q9LTQ0 OMA:ANISTEK
PhylomeDB:Q9LTQ0 ProtClustDB:CLSN2688595 Genevestigator:Q9LTQ0
Uniprot:Q9LTQ0
Length = 391
Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
Identities = 192/347 (55%), Positives = 268/347 (77%)
Query: 26 SLP-SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALS 84
S+P S EME ++ VE I+NY F NK LL+EA+TH+S TD SY+RLEFIGD+A+GLA+S
Sbjct: 50 SVPVSSEME-SMEAVEKILNYKFSNKSLLKEAITHTSCTDFPSYERLEFIGDSAIGLAIS 108
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS 144
NY++L YP L+P LSLLRAAN+STEKLARV++ HG Y F+R +A +LD+KVKEF+EAV
Sbjct: 109 NYLYLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVG 168
Query: 145 QEDNTAV-YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ED+ +V YGG +KAPKVLAD+ ES+A A+YVD++FDLQ+LW+IFRGLLEPIVTL++LQ+
Sbjct: 169 KEDDLSVSYGGLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQK 228
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
QPQPV++LFKLC K+ K++DIK+W+ +IA +Y+D +AS +E K+IA+L AA+EA
Sbjct: 229 QPQPVSMLFKLCHKHKKRIDIKNWKDGNVSIAVIYLDDELLASGRAENKDIARLIAAKEA 288
Query: 264 LEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDK 323
L KL++ PV + D+ + ++ AK KL+E+C KKKWPKP Y +E+D K
Sbjct: 289 LRKLSEVFPVEM----VIDEDSVEIQLTHAKTKLNEICLKKKWPKPIYSVEEDRSSVQGK 344
Query: 324 KFMSAVQIATTDG-VLFITGDEKSRVKDAENSAASMMLRALRESTYL 369
+F+ + +I T+ L++ GDE+S++K AE+S+A M+RALR+S YL
Sbjct: 345 RFVCSAKIKITEEKTLYMKGDEQSKIKKAESSSAYHMIRALRKSHYL 391
>TAIR|locus:2153333 [details] [associations]
symbol:RTL3 "RNAse THREE-like protein 3" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0006396 GO:GO:0003725 GO:GO:0090305
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 EMBL:AB012240 HSSP:O67082
IPI:IPI00541445 RefSeq:NP_199328.1 UniGene:At.55380
ProteinModelPortal:Q9FKF0 SMR:Q9FKF0 PaxDb:Q9FKF0 PRIDE:Q9FKF0
EnsemblPlants:AT5G45150.1 GeneID:834551 KEGG:ath:AT5G45150
TAIR:At5g45150 HOGENOM:HOG000152519 InParanoid:Q9FKF0 OMA:PHVEPED
PhylomeDB:Q9FKF0 ProtClustDB:CLSN2916859 Genevestigator:Q9FKF0
Uniprot:Q9FKF0
Length = 957
Score = 503 (182.1 bits), Expect = 3.0e-47, P = 3.0e-47
Identities = 107/248 (43%), Positives = 166/248 (66%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVF 88
S EM+ +V VE I+NY+F NK LL+E LTH++ S +Q L F+G++AL LA + +++
Sbjct: 408 SSEMDSSVEAVEKILNYSFVNKTLLKELLTHNN---SPLFQGLMFVGESALSLAFTKHLY 464
Query: 89 LAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN 148
L YP L+P LS+LR AN +K A VAVK G Y+ S + +F E + +ED+
Sbjct: 465 LTYPMLEPKDLSVLRDANTCHDKYACVAVKKGIYQSFIGSVPKPEKMTTDFIELMGKEDD 524
Query: 149 TAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQ-PQP 207
Y +KAPK+L +++ +A A+Y+D+ +++Q+L IFR LLEPI TL++L+ Q QP
Sbjct: 525 P--YR-VVKAPKILVNLLAGVAGAVYIDVKYNVQRLLEIFRVLLEPIYTLDDLRMQLKQP 581
Query: 208 VTLLFKLCQKNGKQVDIKHWRK--NRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+LF+L K+GKQ+D ++ + +RKNIA VY+D F+AS +++ + AKL AA EA++
Sbjct: 582 FLMLFRLADKHGKQIDFRYSKDGGSRKNIAQVYMDDMFIASGCAKRIDTAKLLAAEEAIQ 641
Query: 266 KLAQSMPV 273
KL++ MP+
Sbjct: 642 KLSECMPI 649
Score = 452 (164.2 bits), Expect = 1.0e-55, Sum P(2) = 1.0e-55
Identities = 113/281 (40%), Positives = 160/281 (56%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQ 93
++V VE I+NY+F NK LL+EA+T S + RLEF GD+ L +A +NY+ YP
Sbjct: 2 NSVEAVEKILNYSFVNKTLLKEAITQKS----PLFDRLEFFGDSILEVAFTNYICHTYPN 57
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
L +L LR AN+S EK AR+AV H + F+ +L KVK FAEAV +ED+ YG
Sbjct: 58 LKVKELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAEAVRKEDDPVPYG 117
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQ-PVTLLF 212
G +KAPK+LAD +ESIAA +++D+++D+++LW IFR LLEPI T ++L QP+ P LF
Sbjct: 118 GLVKAPKILADTLESIAATVFIDVNYDVKRLWEIFRSLLEPIYTPDDLLLQPKLPFLTLF 177
Query: 213 KLCQKNGKQVD--IKHWRKNRK----NIASVYVDGSFVASASSE--QKEIAKLNAAREAL 264
+L K+G + I+ + K N + VD V S E E+ L+ E
Sbjct: 178 RLADKHGSESTSGIRKMTTSTKILLRNKDCLDVDLEDVKGKSFEICSTELFSLSTVSE-- 235
Query: 265 EKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKK 305
L M +V + D+ E E K KL E+C +K
Sbjct: 236 NSLTDEMSQE-EV--VIDEDSPNVEPEDVKGKLFEICYTRK 273
Score = 168 (64.2 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 43/140 (30%), Positives = 65/140 (46%)
Query: 229 KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKF 288
+N + V G S S E + + E + M V+ D +
Sbjct: 782 ENSPYVEPVDTKGKLFESCSVESSSLPTTSENPSTYEMTTKQMVVDKDSPHV-------- 833
Query: 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAV--QIATTDGVLFITGDEKS 346
E E K KL E+C K KWP P + +E++ G +++K + +V +I +G I GD K
Sbjct: 834 EPEDEKGKLFEICAKNKWPNPIFSVEEERGQQNEQKIVCSVKIEIPNIEGTFHIKGDAKP 893
Query: 347 RVKDAENSAASMMLRALRES 366
K+AENS+A M+RAL S
Sbjct: 894 TKKEAENSSADHMIRALESS 913
Score = 159 (61.0 bits), Expect = 1.0e-55, Sum P(2) = 1.0e-55
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 296 KLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAV--QIATTDGVLFITGDEKSRVKDAEN 353
+L E+C K KWP+P + +++++GP ++ KF+ +V +I +G + GD KS+ K AEN
Sbjct: 311 ELIEICTKNKWPRPIFSVQEEKGPKNEPKFVCSVKIEIPNIEGTFHMKGDIKSKKKQAEN 370
Query: 354 SAASMMLRALRES 366
S A M+RAL S
Sbjct: 371 SLAYHMIRALESS 383
>UNIPROTKB|Q8LMR2 [details] [associations]
symbol:DCL1 "Endoribonuclease Dicer homolog 1"
species:39947 "Oryza sativa Japonica Group" [GO:0007275
"multicellular organismal development" evidence=IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
Pfam:PF00035 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 Gene3D:3.30.160.20
EMBL:DP000009 EMBL:AP008209 GO:GO:0003725 GO:GO:0090305
GO:GO:0004386 SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM000140 EMBL:AC105363 RefSeq:NP_001048796.2
UniGene:Os.13488 HSSP:P66666 ProteinModelPortal:Q8LMR2 PRIDE:Q8LMR2
EnsemblPlants:LOC_Os03g02970.1 GeneID:4331440
KEGG:dosa:Os03t0121800-00 KEGG:dosa:Os03t0121901-00
KEGG:osa:4331440 Gramene:Q8LMR2 eggNOG:COG1111 HOGENOM:HOG000239675
KO:K11592 OMA:ITHASRP GO:GO:0004525 GO:GO:0035196
Gene3D:1.10.1520.10 SUPFAM:SSF69065 Uniprot:Q8LMR2
Length = 1883
Score = 522 (188.8 bits), Expect = 1.3e-48, P = 1.3e-48
Identities = 127/347 (36%), Positives = 199/347 (57%)
Query: 27 LPSPEMEDAVF-YVENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLAL 83
+P M F ++ ++ F+NK LL EA+TH+S S + YQRLEF+GDA L +
Sbjct: 1528 IPESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLI 1587
Query: 84 SNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV 143
+ ++F Y L PG+L+ LRAA ++ E ARVAVKH + +RH ++AL+ +++EF + V
Sbjct: 1588 TRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDV 1647
Query: 144 SQE---DNTAVYG-GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLE 199
+E +G G KAPKVL DIVESIA AI++D +D +W +F+ LL P+VT E
Sbjct: 1648 QEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPE 1707
Query: 200 ELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNA 259
L P V L + CQ+ + ++ K R V+VDG + A + QK++A+ A
Sbjct: 1708 TLPMHP--VRELQERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLA 1765
Query: 260 AREALEKLAQSMPVNCDVCEIFDDIDEKFEIEA-AKQKLHELCGKKKWPKPSYKIEKDEG 318
AR AL L + E D ++K + +Q L+++C +++WP P Y+ + G
Sbjct: 1766 ARNALVVLKEKETATKKEDE--RDGEKKNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGG 1823
Query: 319 PSHDKKFMSAVQIATTD-GVLF-ITGDEKSRVKDAENSAASMMLRAL 363
P+H K+F+ +V++ T+D G G+ VK A++SAA ++L L
Sbjct: 1824 PAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELL 1870
Score = 127 (49.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+++II+Y ++LE ALT +S ++ Y+R E +GDA L +S ++FL YPQ GQ
Sbjct: 1324 LKDIIDYPVPATKILE-ALTAASCQETLCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1382
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVR 126
L+ +R +S L + A+ +++
Sbjct: 1383 LTRMRQQMVSNMVLYQYALNKTLQSYIQ 1410
Score = 50 (22.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 133 DDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYV 175
DD E E +++ Y + + K LAD+VE++ YV
Sbjct: 1455 DDYADNMQEDGEIEGDSSCY--RVLSSKTLADVVEALIGVYYV 1495
>TAIR|locus:504955425 [details] [associations]
symbol:RTL1 "RNAse II-like 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0004525
"ribonuclease III activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] InterPro:IPR000999 Pfam:PF00636 PROSITE:PS50142
SMART:SM00535 EMBL:CP002687 GO:GO:0003723 GO:GO:0006396
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 IPI:IPI00537607
RefSeq:NP_680697.4 UniGene:At.45352 ProteinModelPortal:F4JK37
SMR:F4JK37 PRIDE:F4JK37 EnsemblPlants:AT4G15417.1 GeneID:827212
KEGG:ath:AT4G15417 OMA:HRFLRHK PhylomeDB:F4JK37 Uniprot:F4JK37
Length = 264
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 92/236 (38%), Positives = 142/236 (60%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD--STSYQRLEFIGDAALGLALSNYVFLA-YPQLD 95
+E I+NY FK+K LL +A T +SY D S SY+ LE +GD+ L + + Y F+ YP+
Sbjct: 32 LEKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGII-YDFIKLYPKEA 90
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
PG L+ LRA N+ TEKLARVAV H Y ++RH L++++ EF EA+ E G
Sbjct: 91 PGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAM--EKYPLHSNGL 148
Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLC 215
+K PKVLADIVES AI++D + + +W + + LLEPI+ L++++ P +T L ++C
Sbjct: 149 LKVPKVLADIVESTIGAIFMDCN-STETVWKVIKPLLEPIIHLDKMKSHP--MTELNEMC 205
Query: 216 QKNGKQVDIKH-WRKNRKNIASVYVDGSFVASASSE-QKEIAKLNAAREALEKLAQ 269
QK ++ K W +N+ +++ FV +KE A+ AA+ A++ A+
Sbjct: 206 QKRNLKLTSKDTWEENQTYC--FHIEDKFVGCGHHPVKKETARNFAAKNAIDNFAK 259
>TAIR|locus:2149259 [details] [associations]
symbol:DCL4 "dicer-like 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006396
"RNA processing" evidence=ISS;RCA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010050 "vegetative phase change"
evidence=RCA;IMP] [GO:0010267 "production of ta-siRNAs involved in
RNA interference" evidence=RCA;IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA;IMP] [GO:0051607
"defense response to virus" evidence=RCA;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IGI;RCA] [GO:0009616 "virus induced gene silencing"
evidence=IGI;RCA] [GO:0010599 "production of lsiRNA involved in RNA
interference" evidence=IMP] [GO:0006353 "DNA-dependent
transcription, termination" evidence=IMP] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00035 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170
Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358
SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010599 GO:GO:0010267 GO:GO:0010050 EMBL:AF296825
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0010216 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ118423 IPI:IPI00521227
RefSeq:NP_197532.3 UniGene:At.31201 PDB:2KOU PDBsum:2KOU
ProteinModelPortal:P84634 SMR:P84634 MINT:MINT-6948367
STRING:P84634 PaxDb:P84634 PRIDE:P84634 EnsemblPlants:AT5G20320.1
GeneID:832154 KEGG:ath:AT5G20320 TAIR:At5g20320
HOGENOM:HOG000083706 InParanoid:P84634 OMA:RNLLHNR PhylomeDB:P84634
ProtClustDB:CLSN2702253 EvolutionaryTrace:P84634
Genevestigator:P84634 GO:GO:0006353 GO:GO:0009616 Uniprot:P84634
Length = 1702
Score = 295 (108.9 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 76/241 (31%), Positives = 122/241 (50%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+EN ++Y F +K LL +A H SY YQRLEF+GDA L +++Y F +P+L P
Sbjct: 1295 LENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKP 1354
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQL+ LR+ +++ E LA VAV +F+ + L + ++++ ++ +
Sbjct: 1355 GQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEGP 1414
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
+ PKVL D+VES A+++D F+L +W + L+P+ L LQ P + L +LCQ
Sbjct: 1415 RCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQISP--IKELIELCQ 1472
Query: 217 KNGKQVDIKHWRKNRKNIASVYV--DGS-FVASASSEQKEIAKLNAAREALEKLAQSMPV 273
+I +K+ + V +G SA+ K RE +K AQ M
Sbjct: 1473 SYKWDREISATKKDGAFTVELKVTKNGCCLTVSATGRNK--------REGTKKAAQLMIT 1524
Query: 274 N 274
N
Sbjct: 1525 N 1525
Score = 125 (49.1 bits), Expect = 9.8e-11, Sum P(3) = 9.8e-11
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 51 RLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTE 110
R+LE ALT + S +RLE +GDA L A+S ++FL + LD G+L+ R+ ++
Sbjct: 1102 RVLE-ALTTEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNS 1160
Query: 111 KLARVAVKHGFYKFVRHSA 129
L R+A+K ++R A
Sbjct: 1161 NLCRLAIKKNLQVYIRDQA 1179
Score = 108 (43.1 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 26/83 (31%), Positives = 39/83 (46%)
Query: 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDG---VLFITGDEKSR 347
+ AK LHE C W P ++ ++EGP H K F+ V + D L G+ ++
Sbjct: 1620 KTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNMTLECYGEARAT 1679
Query: 348 VKDAENSAASMMLRALRESTYLC 370
K A AA + L+ S +LC
Sbjct: 1680 KKGAAEHAAQAAIWCLKHSGFLC 1702
Score = 48 (22.0 bits), Expect = 9.8e-11, Sum P(3) = 9.8e-11
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 160 KVLADIVESIAAAIYVDIDF 179
K +AD+VE++ A VD F
Sbjct: 1233 KTIADVVEALVGAFLVDSGF 1252
Score = 41 (19.5 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 14/70 (20%), Positives = 31/70 (44%)
Query: 295 QKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENS 354
++L ELC KW + +KD F +++ L ++ +++ ++
Sbjct: 1465 KELIELCQSYKWDREISATKKDGA------FTVELKVTKNGCCLTVSATGRNK-REGTKK 1517
Query: 355 AASMMLRALR 364
AA +M+ L+
Sbjct: 1518 AAQLMITNLK 1527
>UNIPROTKB|A7LFZ6 [details] [associations]
symbol:DCL4 "Endoribonuclease Dicer homolog 4"
species:39947 "Oryza sativa Japonica Group" [GO:0009944 "polarity
specification of adaxial/abaxial axis" evidence=IMP] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IDA] [GO:0010492 "maintenance of shoot apical meristem
identity" evidence=IMP] [GO:0048608 "reproductive structure
development" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010492 GO:GO:0010267 EMBL:AL606607 EMBL:AP008210
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009944
GO:GO:0008026 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 HOGENOM:HOG000083706
EMBL:EU009924 EMBL:AB353922 EMBL:AK066586 RefSeq:NP_001053278.1
UniGene:Os.27988 GeneID:4336362 KEGG:osa:4336362 Gramene:A7LFZ6
ProtClustDB:CLSN2694920 GO:GO:0048608 Uniprot:A7LFZ6
Length = 1657
Score = 295 (108.9 bits), Expect = 2.5e-32, Sum P(2) = 2.5e-32
Identities = 76/258 (29%), Positives = 135/258 (52%)
Query: 16 YRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEF 73
YR+L + + +L + D + +E +I Y FK+K LL +A H S++ + YQRLEF
Sbjct: 1196 YRVLDSSSI-NLSLMDYTD-IAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEF 1253
Query: 74 IGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALD 133
+GDA L +++Y++ YP + PGQ++ LR+ + + LA AV+ +K + + L
Sbjct: 1254 LGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLT 1313
Query: 134 DKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLE 193
+ +F V ++ PK L DIVES A+ +D F+L +W + LL+
Sbjct: 1314 SAISKFEMYVKLSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLK 1373
Query: 194 PIVTLEELQQQPQPVTLLFKLCQKNGKQVDI-KHWRKNRKNIASVYVDGS---FVASASS 249
P++T + P + L +LCQ +G ++ + K + + + V V+ + +A++
Sbjct: 1374 PVLTFANMHTNP--MRELRELCQCHGFELGLPKPMKADGEYHVKVEVNIKSKIIICTAAN 1431
Query: 250 EQKEIAKLNAAREALEKL 267
+ A+ AA+E L KL
Sbjct: 1432 RNSKAARKFAAQETLSKL 1449
Score = 104 (41.7 bits), Expect = 2.5e-32, Sum P(2) = 2.5e-32
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMS--AVQIATTDGVLF-ITGDEKSR 347
+ A+ L ELC W P +K+ K+EGPSH +KF V+I L D K +
Sbjct: 1568 KTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQ 1627
Query: 348 VKDAENSAASMMLRALRESTYL 369
K A+ AA L L++ +L
Sbjct: 1628 KKAAQEHAAQGALWCLKQLGHL 1649
Score = 96 (38.9 bits), Expect = 4.6e-07, Sum P(4) = 4.6e-07
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EALT + S +R E +GDA L + + F+ Y LD GQL+ R+ ++ L
Sbjct: 1029 EALTTEKCLERISLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYE 1088
Query: 115 VAVKHGFYKFVR 126
++++ ++R
Sbjct: 1089 LSIRKKLQVYIR 1100
Score = 48 (22.0 bits), Expect = 4.6e-07, Sum P(4) = 4.6e-07
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 160 KVLADIVESIAAAIYVDIDF 179
KV+AD+VES+ A V+ F
Sbjct: 1155 KVIADVVESLIGAFLVEGGF 1174
Score = 38 (18.4 bits), Expect = 4.6e-07, Sum P(4) = 4.6e-07
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 225 KHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270
KH K+ ++ S S+ +K++ + A +AL + +S
Sbjct: 1303 KHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEPACPKALGDIVES 1348
>TAIR|locus:2097705 [details] [associations]
symbol:DCL2 "dicer-like 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010216 "maintenance of DNA methylation"
evidence=IMP] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA;IMP] [GO:0051607 "defense response to
virus" evidence=RCA;IMP] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=IGI;RCA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0007267 "cell-cell signaling"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010050 "vegetative phase change" evidence=RCA] [GO:0010073
"meristem maintenance" evidence=RCA] [GO:0016569 "covalent
chromatin modification" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0051607 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0010267 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC012328 GO:GO:0010216 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ479970
EMBL:DQ479971 IPI:IPI00530074 IPI:IPI00852241 RefSeq:NP_001078101.1
RefSeq:NP_001189798.1 RefSeq:NP_566199.4 UniGene:At.43488
ProteinModelPortal:Q3EBC8 SMR:Q3EBC8 IntAct:Q3EBC8 STRING:Q3EBC8
PaxDb:Q3EBC8 PRIDE:Q3EBC8 EnsemblPlants:AT3G03300.1
EnsemblPlants:AT3G03300.3 GeneID:821300 KEGG:ath:AT3G03300
TAIR:At3g03300 HOGENOM:HOG000006099 InParanoid:Q3EBC8 OMA:TAIVLES
PhylomeDB:Q3EBC8 ProtClustDB:CLSN2694055 Genevestigator:Q3EBC8
Uniprot:Q3EBC8
Length = 1388
Score = 311 (114.5 bits), Expect = 2.4e-26, P = 2.4e-26
Identities = 80/242 (33%), Positives = 133/242 (54%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYP 92
V Y+E+++NY+F++K LL EALTH SY YQRLEF+GD+ L ++ +++ YP
Sbjct: 1149 VGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYP 1208
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
L PG L+ +R+A+++ E A VAVK +K + +++ L + Q + +
Sbjct: 1209 CLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTF 1268
Query: 153 G--GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL 210
G I PKVL D++ES+A AI+VD ++ + ++ + LL ++T E ++ P V
Sbjct: 1269 GWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHP--VRE 1326
Query: 211 LFKLCQKNGKQVDIKHWRKNRKNIASVYV-DGSFVASASSEQKEIAKLNAAREALEKLAQ 269
L +LCQK Q ++ + V + SF +A + K++AK A +E L L
Sbjct: 1327 LTELCQK--WQFELSKAKDFDSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLKN 1384
Query: 270 SM 271
S+
Sbjct: 1385 SL 1386
>FB|FBgn0039016 [details] [associations]
symbol:Dcr-1 "Dicer-1" species:7227 "Drosophila melanogaster"
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0016443 "bidentate ribonuclease III activity" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016246 "RNA interference" evidence=IDA;IMP;TAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP;TAS] [GO:0035087 "siRNA loading
onto RISC involved in RNA interference" evidence=IMP] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0031054
"pre-miRNA processing" evidence=IDA;IMP;TAS] [GO:0035195 "gene
silencing by miRNA" evidence=TAS] [GO:0042078 "germ-line stem cell
division" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0045448 "mitotic cell
cycle, embryonic" evidence=IMP] [GO:0007279 "pole cell formation"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0007367 "segment polarity determination" evidence=IGI]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0070883
"pre-miRNA binding" evidence=IDA] [GO:0003727 "single-stranded RNA
binding" evidence=IDA] [GO:0030727 "germarium-derived female
germ-line cyst formation" evidence=IMP] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE014297 GO:GO:0005524 GO:GO:0005737 GO:GO:0007294
GO:GO:0045448 GO:GO:0046872 GO:GO:0003727 GO:GO:0048813
GO:GO:0003725 GO:GO:0004386 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0033227 GO:GO:0007279 GO:GO:0030422
GO:GO:0007367 GO:GO:0035087 GO:GO:0030727 GO:GO:0042078 KO:K11592
Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:42693
GeneTree:ENSGT00510000046789 EMBL:AY050230 RefSeq:NP_524453.1
UniGene:Dm.1283 ProteinModelPortal:Q9VCU9 SMR:Q9VCU9 DIP:DIP-23028N
IntAct:Q9VCU9 MINT:MINT-923321 STRING:Q9VCU9 PaxDb:Q9VCU9
PRIDE:Q9VCU9 EnsemblMetazoa:FBtr0084324 GeneID:42693
KEGG:dme:Dmel_CG4792 UCSC:CG4792-RA FlyBase:FBgn0039016
eggNOG:COG0571 InParanoid:Q9VCU9 OMA:FLTPRYV OrthoDB:EOG44B8H0
PhylomeDB:Q9VCU9 GenomeRNAi:42693 NextBio:830091 Bgee:Q9VCU9
GermOnline:CG4792 GO:GO:0016443 GO:GO:0070883 Uniprot:Q9VCU9
Length = 2249
Score = 284 (105.0 bits), Expect = 3.3e-23, P = 3.3e-23
Identities = 76/247 (30%), Positives = 124/247 (50%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1997 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2056
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV----Y 152
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F + QE+ + Y
Sbjct: 2057 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR-IQQENGHCISEEYY 2115
Query: 153 ---------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
++ PK L D+ ESIA AI++D + L +W ++ ++ P +
Sbjct: 2116 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSV 2175
Query: 204 QPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
P+ L +L K GK + R+ R + V+ G+F IAK AA
Sbjct: 2176 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTV-DVFCKGTF--RGIGRNYRIAKCTAA 2232
Query: 261 REALEKL 267
+ AL +L
Sbjct: 2233 KCALRQL 2239
>RGD|1309381 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001525 "angiogenesis" evidence=ISO] [GO:0001932 "regulation of
protein phosphorylation" evidence=ISO] [GO:0001942 "hair follicle
development" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004525 "ribonuclease III activity" evidence=ISO]
[GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment"
evidence=IDA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0006915 "apoptotic process" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0009791 "post-embryonic development"
evidence=ISO] [GO:0010070 "zygote asymmetric cell division"
evidence=ISO] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISO] [GO:0010628 "positive regulation of
gene expression" evidence=ISO] [GO:0014040 "positive regulation of
Schwann cell differentiation" evidence=ISO] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0019827 "stem
cell maintenance" evidence=ISO] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=ISO] [GO:0021675 "nerve
development" evidence=ISO] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=ISO] [GO:0021987 "cerebral cortex
development" evidence=ISO] [GO:0030324 "lung development"
evidence=ISO] [GO:0030326 "embryonic limb morphogenesis"
evidence=ISO] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=IDA] [GO:0030425 "dendrite" evidence=IDA]
[GO:0030426 "growth cone" evidence=IDA] [GO:0031054 "pre-miRNA
processing" evidence=ISO] [GO:0031069 "hair follicle morphogenesis"
evidence=ISO] [GO:0031641 "regulation of myelination" evidence=ISO]
[GO:0031643 "positive regulation of myelination" evidence=ISO]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISO] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0035198 "miRNA binding"
evidence=ISO] [GO:0035264 "multicellular organism growth"
evidence=ISO] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=ISO] [GO:0042981 "regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0045069 "regulation of
viral genome replication" evidence=ISO] [GO:0045595 "regulation of
cell differentiation" evidence=ISO] [GO:0045664 "regulation of
neuron differentiation" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048536 "spleen development" evidence=ISO]
[GO:0048565 "digestive tract development" evidence=ISO] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=ISO]
[GO:0048730 "epidermis morphogenesis" evidence=ISO] [GO:0048754
"branching morphogenesis of an epithelial tube" evidence=ISO]
[GO:0048812 "neuron projection morphogenesis" evidence=ISO]
[GO:0050767 "regulation of neurogenesis" evidence=ISO] [GO:0051225
"spindle assembly" evidence=ISO] [GO:0051607 "defense response to
virus" evidence=ISO] [GO:0051726 "regulation of cell cycle"
evidence=ISO] [GO:0055013 "cardiac muscle cell development"
evidence=ISO] [GO:0060119 "inner ear receptor cell development"
evidence=ISO] [GO:0060253 "negative regulation of glial cell
proliferation" evidence=ISO] [GO:0060576 "intestinal epithelial
cell development" evidence=ISO] [GO:0070173 "regulation of enamel
mineralization" evidence=ISO] [GO:0071335 "hair follicle cell
proliferation" evidence=ISO] [GO:2000630 "positive regulation of
miRNA metabolic process" evidence=ISO] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
RGD:1309381 GO:GO:0030424 GO:GO:0030425 Gene3D:3.30.160.20
GO:GO:0030426 GO:GO:0003725 GO:GO:0005793 GO:GO:0010626
eggNOG:COG1111 GO:GO:0004525 GO:GO:0035196 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
GO:GO:0031643 GO:GO:0014040 HOVERGEN:HBG092134 IPI:IPI00365891
EMBL:BC098796 UniGene:Rn.205881 STRING:Q4G034 PhosphoSite:Q4G034
UCSC:RGD:1309381 InParanoid:Q4G034 Genevestigator:Q4G034
Uniprot:Q4G034
Length = 401
Score = 248 (92.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 76/251 (30%), Positives = 120/251 (47%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 149 EKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 208
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL----DDKV-----KEFAEAVSQE- 146
G L+ LR+A ++ A +AVK+ ++K+ + + L DD V K + + E
Sbjct: 209 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 268
Query: 147 ---DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ I+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 269 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANV 328
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVD-GSFVASASSEQKEIAKLNAARE 262
PV L ++ + K + + + V G F S + IAK AAR
Sbjct: 329 PRSPVRELLEMEPETAKFSPAERTYDGKVRVTVELVGKGKFKGVGRSYR--IAKSAAARR 386
Query: 263 ALEKLAQSMPV 273
AL L + P+
Sbjct: 387 ALRSLKANQPL 397
>UNIPROTKB|B3KRG4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AL356017
EMBL:AL390254 UniGene:Hs.87889 HGNC:HGNC:17098 ChiTaRS:DICER1
EMBL:AK091513 IPI:IPI01025259 SMR:B3KRG4 STRING:B3KRG4
Ensembl:ENST00000556045 UCSC:uc001ydy.1 HOVERGEN:HBG092134
Uniprot:B3KRG4
Length = 820
Score = 253 (94.1 bits), Expect = 4.4e-19, P = 4.4e-19
Identities = 75/249 (30%), Positives = 118/249 (47%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 568 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 627
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL----DDKV-----KEFAEAVSQE- 146
G L+ LR+A ++ A +AVK+ ++K+ + + L DD V K + + E
Sbjct: 628 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 687
Query: 147 ---DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ I+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 688 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 747
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 748 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 806
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 807 LRSLKANQP 815
Score = 125 (49.1 bits), Expect = 0.00016, P = 0.00016
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 191 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 250
Query: 109 TEKLARVAVKHG 120
L R+ K G
Sbjct: 251 NCNLYRLGKKKG 262
>MGI|MGI:2177178 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10090
"Mus musculus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IMP] [GO:0001932 "regulation of protein phosphorylation"
evidence=IMP] [GO:0001942 "hair follicle development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=ISO;ISA;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005793 "endoplasmic reticulum-Golgi
intermediate compartment" evidence=ISO] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IMP;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0008593 "regulation of Notch signaling pathway" evidence=IC]
[GO:0009791 "post-embryonic development" evidence=IMP] [GO:0010070
"zygote asymmetric cell division" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0010626 "negative
regulation of Schwann cell proliferation" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0014040
"positive regulation of Schwann cell differentiation" evidence=IMP]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IMP] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IMP] [GO:0021675 "nerve development"
evidence=IMP] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IMP] [GO:0021987 "cerebral cortex
development" evidence=IMP] [GO:0030324 "lung development"
evidence=IMP] [GO:0030326 "embryonic limb morphogenesis"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO;IDA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0030426 "growth cone" evidence=ISO] [GO:0031047 "gene silencing
by RNA" evidence=IEA] [GO:0031054 "pre-miRNA processing"
evidence=ISO;IDA] [GO:0031069 "hair follicle morphogenesis"
evidence=IMP] [GO:0031641 "regulation of myelination" evidence=IMP]
[GO:0031643 "positive regulation of myelination" evidence=IMP]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP] [GO:0035198 "miRNA binding"
evidence=IDA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=IMP] [GO:0042981 "regulation of
apoptotic process" evidence=IMP] [GO:0043066 "negative regulation
of apoptotic process" evidence=IMP] [GO:0045069 "regulation of
viral genome replication" evidence=IMP] [GO:0045595 "regulation of
cell differentiation" evidence=IMP] [GO:0045664 "regulation of
neuron differentiation" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048536 "spleen development" evidence=IMP] [GO:0048565
"digestive tract development" evidence=IMP] [GO:0048713 "regulation
of oligodendrocyte differentiation" evidence=IMP] [GO:0048730
"epidermis morphogenesis" evidence=IMP] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IMP] [GO:0048812
"neuron projection morphogenesis" evidence=IMP] [GO:0050767
"regulation of neurogenesis" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0051726 "regulation of cell cycle" evidence=IMP]
[GO:0055013 "cardiac muscle cell development" evidence=IMP]
[GO:0060119 "inner ear receptor cell development" evidence=IMP]
[GO:0060253 "negative regulation of glial cell proliferation"
evidence=IMP] [GO:0060576 "intestinal epithelial cell development"
evidence=IGI] [GO:0070173 "regulation of enamel mineralization"
evidence=IMP] [GO:0071335 "hair follicle cell proliferation"
evidence=IMP] [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 MGI:MGI:2177178 GO:GO:0005524
GO:GO:0010070 GO:GO:0005737 GO:GO:0006915 GO:GO:0021987
GO:GO:0043066 GO:GO:0045664 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 GO:GO:0001932 GO:GO:0016075 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 GO:GO:0010626
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
HOVERGEN:HBG107811 GO:GO:0071335 GO:GO:0060576 GO:GO:0021889
GO:GO:0032290 GO:GO:0031643 GO:GO:0014040 GO:GO:0070173
GO:GO:0048713 EMBL:AF484523 EMBL:AF484524 EMBL:AB081470
EMBL:AF430845 IPI:IPI00227881 UniGene:Mm.21135 PDB:3C4B PDB:3C4T
PDBsum:3C4B PDBsum:3C4T ProteinModelPortal:Q8R418 SMR:Q8R418
DIP:DIP-29721N IntAct:Q8R418 STRING:Q8R418 PhosphoSite:Q8R418
PaxDb:Q8R418 PRIDE:Q8R418 UCSC:uc007oxi.1 InParanoid:Q8R419
EvolutionaryTrace:Q8R418 CleanEx:MM_DICER1 Genevestigator:Q8R418
GermOnline:ENSMUSG00000041415 GO:GO:0060119 GO:GO:2000630
GO:GO:0008593 Uniprot:Q8R418
Length = 1916
Score = 256 (95.2 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 79/251 (31%), Positives = 121/251 (48%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1664 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1723
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL----DDKVK---EFAEAV------ 143
G L+ LR+A ++ A +AVK+ ++K+ + + L DD VK E E
Sbjct: 1724 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSEL 1783
Query: 144 --SQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEEL 201
S+ED I+ PK + DI ES+A AIY+D L+ +W ++ +++P++
Sbjct: 1784 RRSEEDEEKEE--DIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSA 1841
Query: 202 QQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
PV L ++ + K + + + +V V G IAK AAR
Sbjct: 1842 NVPRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAAR 1900
Query: 262 EALEKLAQSMP 272
AL L + P
Sbjct: 1901 RALRSLKANQP 1911
Score = 130 (50.8 bits), Expect = 0.00012, P = 0.00012
Identities = 39/119 (32%), Positives = 62/119 (52%)
Query: 2 NPESFTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSS 61
+P T+P A + + LK+ M S SP +V Y + N L+ +ALT S+
Sbjct: 1255 SPAVSTMP-AMMNAVKALKDRM-DSEQSP----SVGYSSRTLG---PNPGLILQALTLSN 1305
Query: 62 YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHG 120
+D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S L R+ K G
Sbjct: 1306 ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKG 1364
Score = 43 (20.2 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 24 LTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS 65
L+ PSPE E Y + N + N L + L +T S
Sbjct: 957 LSKFPSPEYETFAEYYKTKYNLDLTN---LNQPLLDVDHTSS 995
>UNIPROTKB|F1NJX0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0005524
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00818350 EMBL:AADN02003674
Ensembl:ENSGALT00000037569 ArrayExpress:F1NJX0 Uniprot:F1NJX0
Length = 1921
Score = 254 (94.5 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 75/249 (30%), Positives = 119/249 (47%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY+FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1669 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1728
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL----DDKV-----KEFAEAVSQE- 146
G L+ LR+A ++ A +AVK+ ++K+ + + L DD V K + + E
Sbjct: 1729 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1788
Query: 147 ---DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ I+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1789 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1848
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1849 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1907
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1908 LRSLKANQP 1916
Score = 125 (49.1 bits), Expect = 0.00044, P = 0.00044
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1294 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1353
Query: 109 TEKLARVAVKHG 120
L R+ K G
Sbjct: 1354 NCNLYRLGKKKG 1365
Score = 43 (20.2 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 24 LTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS 65
L+ PSPE E Y + N + N L + L +T S
Sbjct: 957 LSKFPSPEYETFAEYYKTKYNLDLTN---LNQPLLDVDHTSS 995
>UNIPROTKB|Q25BN1 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0030423 "targeting of mRNA
for destruction involved in RNA interference" evidence=ISS]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=ISS] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 CTD:23405 HOGENOM:HOG000001567 EMBL:AB253768
IPI:IPI00818350 RefSeq:NP_001035555.1 UniGene:Gga.33735
ProteinModelPortal:Q25BN1 SMR:Q25BN1 STRING:Q25BN1 GeneID:423437
KEGG:gga:423437 NextBio:20825910 Uniprot:Q25BN1
Length = 1921
Score = 254 (94.5 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 75/249 (30%), Positives = 119/249 (47%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY+FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1669 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1728
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL----DDKV-----KEFAEAVSQE- 146
G L+ LR+A ++ A +AVK+ ++K+ + + L DD V K + + E
Sbjct: 1729 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1788
Query: 147 ---DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ I+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1789 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1848
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1849 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1907
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1908 LRSLKANQP 1916
Score = 125 (49.1 bits), Expect = 0.00044, P = 0.00044
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1294 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1353
Query: 109 TEKLARVAVKHG 120
L R+ K G
Sbjct: 1354 NCNLYRLGKKKG 1365
Score = 43 (20.2 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 24 LTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS 65
L+ PSPE E Y + N + N L + L +T S
Sbjct: 957 LSKFPSPEYETFAEYYKTKYNLDLTN---LNQPLLDVDHTSS 995
>UNIPROTKB|F1NP11 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0010070 "zygote asymmetric cell division"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0043066 GO:GO:0051225 GO:GO:0045595
Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0000122 GO:GO:0051726
GO:GO:0003725 GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0008026
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 OMA:FLEYDQE GO:GO:0071335
GO:GO:0031643 GO:GO:0070173 EMBL:AADN02003674 IPI:IPI00603674
Ensembl:ENSGALT00000017910 ArrayExpress:F1NP11 Uniprot:F1NP11
Length = 1925
Score = 254 (94.5 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 75/249 (30%), Positives = 119/249 (47%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY+FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1673 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1732
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL----DDKV-----KEFAEAVSQE- 146
G L+ LR+A ++ A +AVK+ ++K+ + + L DD V K + + E
Sbjct: 1733 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1792
Query: 147 ---DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ I+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1793 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1852
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1853 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1911
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1912 LRSLKANQP 1920
Score = 125 (49.1 bits), Expect = 0.00044, P = 0.00044
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1298 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1357
Query: 109 TEKLARVAVKHG 120
L R+ K G
Sbjct: 1358 NCNLYRLGKKKG 1369
Score = 43 (20.2 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 24 LTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS 65
L+ PSPE E Y + N + N L + L +T S
Sbjct: 961 LSKFPSPEYETFAEYYKTKYNLDLTN---LNQPLLDVDHTSS 999
>UNIPROTKB|F1MCQ5 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00715122 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:DAAA02053090
Ensembl:ENSBTAT00000017080 ArrayExpress:F1MCQ5 Uniprot:F1MCQ5
Length = 1920
Score = 253 (94.1 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 75/249 (30%), Positives = 118/249 (47%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1668 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1727
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL----DDKV-----KEFAEAVSQE- 146
G L+ LR+A ++ A +AVK+ ++K+ + + L DD V K + + E
Sbjct: 1728 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1787
Query: 147 ---DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ I+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1788 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1847
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1848 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1906
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1907 LRSLKANQP 1915
Score = 43 (20.2 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 24 LTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS 65
L+ PSPE E Y + N + N L + L +T S
Sbjct: 956 LSKFPSPEYETFAEYYKTKYNLDLTN---LNQPLLDVDHTSS 994
>UNIPROTKB|Q9UPY3 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IEA] [GO:0010070
"zygote asymmetric cell division" evidence=IEA] [GO:0019827 "stem
cell maintenance" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0021889 "olfactory bulb
interneuron differentiation" evidence=IEA] [GO:0021987 "cerebral
cortex development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035264
"multicellular organism growth" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045069
"regulation of viral genome replication" evidence=IEA] [GO:0045664
"regulation of neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048536 "spleen development"
evidence=IEA] [GO:0048713 "regulation of oligodendrocyte
differentiation" evidence=IEA] [GO:0048754 "branching morphogenesis
of an epithelial tube" evidence=IEA] [GO:0051225 "spindle assembly"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IEA] [GO:0055013
"cardiac muscle cell development" evidence=IEA] [GO:0060119 "inner
ear receptor cell development" evidence=IEA] [GO:0060576
"intestinal epithelial cell development" evidence=IEA] [GO:0070173
"regulation of enamel mineralization" evidence=IEA] [GO:0071335
"hair follicle cell proliferation" evidence=IEA] [GO:2000630
"positive regulation of miRNA metabolic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031054 "pre-miRNA processing"
evidence=IDA] [GO:0030423 "targeting of mRNA for destruction
involved in RNA interference" evidence=IMP] [GO:0030422 "production
of siRNA involved in RNA interference" evidence=IDA] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0048812 "neuron projection morphogenesis" evidence=ISS]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISS] [GO:0031643 "positive regulation of myelination"
evidence=ISS] [GO:0021675 "nerve development" evidence=ISS]
[GO:0014040 "positive regulation of Schwann cell differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=ISS] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISS] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005829 GO:GO:0005524
GO:GO:0010070 GO:GO:0006915 GO:GO:0021987 GO:GO:0043066
GO:GO:0045664 EMBL:CH471061 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0010626 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:23405
HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W EMBL:AB028449 EMBL:HM595745
EMBL:AJ132261 EMBL:AB023145 EMBL:AL356017 EMBL:AL390254
EMBL:BC150287 IPI:IPI00219036 IPI:IPI00977554 RefSeq:NP_001182502.1
RefSeq:NP_001258211.1 RefSeq:NP_085124.2 RefSeq:NP_803187.1
UniGene:Hs.87889 PDB:2EB1 PDBsum:2EB1 ProteinModelPortal:Q9UPY3
SMR:Q9UPY3 DIP:DIP-29664N IntAct:Q9UPY3 MINT:MINT-1957525
STRING:Q9UPY3 PhosphoSite:Q9UPY3 DMDM:257051056 PaxDb:Q9UPY3
PRIDE:Q9UPY3 Ensembl:ENST00000343455 Ensembl:ENST00000393063
Ensembl:ENST00000526495 Ensembl:ENST00000527414
Ensembl:ENST00000541352 GeneID:23405 KEGG:hsa:23405 UCSC:uc001ydv.2
GeneCards:GC14M095552 HGNC:HGNC:17098 HPA:HPA000694 MIM:138800
MIM:601200 MIM:606241 neXtProt:NX_Q9UPY3 Orphanet:276399
Orphanet:99916 Orphanet:284343 PharmGKB:PA38437 HOVERGEN:HBG107811
InParanoid:Q9UPY3 OMA:FLEYDQE PhylomeDB:Q9UPY3 BRENDA:3.1.26.3
ChiTaRS:DICER1 EvolutionaryTrace:Q9UPY3 GenomeRNAi:23405
NextBio:45577 ArrayExpress:Q9UPY3 Bgee:Q9UPY3 CleanEx:HS_DICER1
Genevestigator:Q9UPY3 GermOnline:ENSG00000100697 GO:GO:0071335
GO:GO:0060576 GO:GO:0021889 GO:GO:0032290 GO:GO:0031643
GO:GO:0014040 GO:GO:0070173 GO:GO:0048713 Uniprot:Q9UPY3
Length = 1922
Score = 253 (94.1 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 75/249 (30%), Positives = 118/249 (47%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL----DDKV-----KEFAEAVSQE- 146
G L+ LR+A ++ A +AVK+ ++K+ + + L DD V K + + E
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1789
Query: 147 ---DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ I+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1790 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1849
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1850 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1908
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1909 LRSLKANQP 1917
Score = 125 (49.1 bits), Expect = 0.00044, P = 0.00044
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHG 120
L R+ K G
Sbjct: 1353 NCNLYRLGKKKG 1364
Score = 43 (20.2 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 24 LTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS 65
L+ PSPE E Y + N + N L + L +T S
Sbjct: 957 LSKFPSPEYETFAEYYKTKYNLDLTN---LNQPLLDVDHTSS 995
>UNIPROTKB|E2RIN4 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000630 "positive regulation of miRNA
metabolic process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 CTD:23405 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:AAEX03005955 RefSeq:XP_868526.2
Ensembl:ENSCAFT00000028082 GeneID:480426 KEGG:cfa:480426
Uniprot:E2RIN4
Length = 1923
Score = 253 (94.1 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 75/249 (30%), Positives = 118/249 (47%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1671 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1730
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL----DDKV-----KEFAEAVSQE- 146
G L+ LR+A ++ A +AVK+ ++K+ + + L DD V K + + E
Sbjct: 1731 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1790
Query: 147 ---DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ I+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1791 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1850
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1851 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1909
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1910 LRSLKANQP 1918
Score = 125 (49.1 bits), Expect = 0.00044, P = 0.00044
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1294 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1353
Query: 109 TEKLARVAVKHG 120
L R+ K G
Sbjct: 1354 NCNLYRLGKKKG 1365
Score = 43 (20.2 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 24 LTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS 65
L+ PSPE E Y + N + N L + L +T S
Sbjct: 957 LSKFPSPEYETFAEYYKTKYNLDLTN---LNQPLLDVDHTSS 995
>ZFIN|ZDB-GENE-030131-3445 [details] [associations]
symbol:dicer1 "Dicer1, Dcr-1 homolog (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=ISS;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0070883 "pre-miRNA binding" evidence=IDA] [GO:0021591
"ventricular system development" evidence=IGI;IMP] [GO:0035279
"mRNA cleavage involved in gene silencing by miRNA" evidence=IGI]
[GO:0035195 "gene silencing by miRNA" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720
ZFIN:ZDB-GENE-030131-3445 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0035279 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
GO:GO:0021591 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HSSP:P66666 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
eggNOG:COG0571 GO:GO:0070883 CTD:23405 HOGENOM:HOG000001567
EMBL:AL772219 EMBL:AY386319 IPI:IPI00933004 RefSeq:NP_001154925.1
UniGene:Dr.78137 STRING:Q6TV19 Ensembl:ENSDART00000045881
Ensembl:ENSDART00000109826 GeneID:324724 KEGG:dre:324724
InParanoid:Q6TV19 OrthoDB:EOG4JDH5W NextBio:20808937
ArrayExpress:Q6TV19 Bgee:Q6TV19 Uniprot:Q6TV19
Length = 1865
Score = 254 (94.5 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 75/249 (30%), Positives = 119/249 (47%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E+ INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1613 ESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1672
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL----DDKV-----KEFAEAVSQE- 146
G L+ LR+A ++ A +AVK+ ++K+ + + L DD V K + + E
Sbjct: 1673 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1732
Query: 147 ---DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ I+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1733 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1792
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1793 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1851
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1852 LRSLKANQP 1860
Score = 41 (19.5 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 24 LTSLPSPEMEDAVFYVENIINYNFKN 49
L+ PSPE E Y + N + N
Sbjct: 943 LSKFPSPEYETFAEYYKTKYNLDLSN 968
>UNIPROTKB|A0MQH0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:10029
"Cricetulus griseus" [GO:0016442 "RNA-induced silencing complex"
evidence=ISS] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EF031271 RefSeq:NP_001231198.1
ProteinModelPortal:A0MQH0 SMR:A0MQH0 GeneID:100689239
Uniprot:A0MQH0
Length = 1917
Score = 252 (93.8 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 75/249 (30%), Positives = 118/249 (47%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1665 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1724
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL----DDKV-----KEFAEAVSQE- 146
G L+ LR+A ++ A +AVK+ ++K+ + + L DD V K + + E
Sbjct: 1725 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1784
Query: 147 ---DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ I+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1785 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANV 1844
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1845 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1903
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1904 LRSLKANQP 1912
Score = 129 (50.5 bits), Expect = 0.00016, P = 0.00016
Identities = 39/119 (32%), Positives = 62/119 (52%)
Query: 2 NPESFTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSS 61
+P T+P A ++ R LK+ M S SP + Y + N L+ +ALT S+
Sbjct: 1255 SPAVSTMP-AVMSAGRALKDRM-DSEQSP----SAGYSSRTLG---PNPGLILQALTLSN 1305
Query: 62 YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHG 120
+D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S L R+ K G
Sbjct: 1306 ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKG 1364
Score = 43 (20.2 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 24 LTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS 65
L+ PSPE E Y + N + N L + L +T S
Sbjct: 957 LSKFPSPEYETFAEYYKTKYNLDLTN---LNQPLLDVDHTSS 995
>TIGR_CMR|ECH_1054 [details] [associations]
symbol:ECH_1054 "ribonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003725 "double-stranded
RNA binding" evidence=ISS] [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HSSP:Q9X0I6 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_507839.1
ProteinModelPortal:Q2GFE4 STRING:Q2GFE4 GeneID:3927257
KEGG:ech:ECH_1054 PATRIC:20577460
BioCyc:ECHA205920:GJNR-1057-MONOMER Uniprot:Q2GFE4
Length = 226
Score = 158 (60.7 bits), Expect = 3.8e-18, Sum P(3) = 3.8e-18
Identities = 36/94 (38%), Positives = 51/94 (54%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQL 94
+ II YNFKN +LL EALTH S + Y+RLEF+GDA L + +S +F +P+
Sbjct: 5 ISKIIKYNFKNPQLLNEALTHPSLVSKDTLKFNYERLEFLGDAVLNIVISEMLFNIFPKD 64
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHS 128
G L+ + A + KL VA +F+ S
Sbjct: 65 TEGNLAKKKTALVCGNKLVEVAQSINLGQFIMMS 98
Score = 93 (37.8 bits), Expect = 3.8e-18, Sum P(3) = 3.8e-18
Identities = 27/75 (36%), Positives = 35/75 (46%)
Query: 293 AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAE 352
AK L EL K+ P P+Y GP H+ F V+I + + TG K K AE
Sbjct: 155 AKTILQELVQGKRLPAPAYHTIDKSGPDHNPTFTVEVRIPSYQAIQ-ATGHNK---KLAE 210
Query: 353 NSAASMMLRALREST 367
AAS+ML + T
Sbjct: 211 QKAASLMLNQIHNKT 225
Score = 39 (18.8 bits), Expect = 3.8e-18, Sum P(3) = 3.8e-18
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 234 IASVYVDGSFVAS 246
I ++Y+DG F A+
Sbjct: 121 IGAIYLDGGFTAA 133
>UNIPROTKB|E9PU15 [details] [associations]
symbol:Dicer1 "Protein Dicer1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 RGD:1309381 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 IPI:IPI00365891
Ensembl:ENSRNOT00000014405 Uniprot:E9PU15
Length = 1908
Score = 250 (93.1 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
Identities = 75/250 (30%), Positives = 119/250 (47%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1656 EKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1715
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL----DDKV-----KEFAEAVSQE- 146
G L+ LR+A ++ A +AVK+ ++K+ + + L DD V K + + E
Sbjct: 1716 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1775
Query: 147 ---DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ I+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1776 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANV 1835
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1836 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1894
Query: 264 LEKLAQSMPV 273
L L + P+
Sbjct: 1895 LRSLKANQPL 1904
Score = 126 (49.4 bits), Expect = 0.00034, P = 0.00034
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1283 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1342
Query: 109 TEKLARVAVKHG 120
L R+ K G
Sbjct: 1343 NCNLYRLGKKQG 1354
Score = 43 (20.2 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 24 LTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS 65
L+ PSPE E Y + N + N L + L +T S
Sbjct: 947 LSKFPSPEYETFAEYYKTKYNLDLTN---LNQPLLDVDHTSS 985
>FB|FBgn0034246 [details] [associations]
symbol:Dcr-2 "Dicer-2" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS;NAS] [GO:0003725
"double-stranded RNA binding" evidence=IEA;ISS;NAS] [GO:0016246
"RNA interference" evidence=IMP;NAS;IDA;TAS] [GO:0030422
"production of siRNA involved in RNA interference"
evidence=IMP;IDA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0035087 "siRNA
loading onto RISC involved in RNA interference" evidence=IMP]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006342 "chromatin
silencing" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0006379 "mRNA cleavage" evidence=IMP] [GO:0009597 "detection of
virus" evidence=IMP] [GO:0016442 "RNA-induced silencing complex"
evidence=IDA] [GO:0070868 "heterochromatin organization involved in
chromatin silencing" evidence=IMP] [GO:0007626 "locomotory
behavior" evidence=IMP] [GO:0035197 "siRNA binding" evidence=IDA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270
Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE013599 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0007626 GO:GO:0016887 GO:GO:0051607 GO:GO:0003725
GO:GO:0004386 GO:GO:0035197 GO:GO:0016442 GO:GO:0033227
GO:GO:0070868 GO:GO:0030422 GO:GO:0035087 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0006379 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 GO:GO:0009597
EMBL:BT128787 RefSeq:NP_523778.2 UniGene:Dm.7764 SMR:A1ZAW0
DIP:DIP-54444N IntAct:A1ZAW0 STRING:A1ZAW0
EnsemblMetazoa:FBtr0086904 GeneID:36993 KEGG:dme:Dmel_CG6493
UCSC:CG6493-RA CTD:36993 FlyBase:FBgn0034246 InParanoid:A1ZAW0
OrthoDB:EOG4DJHB9 GenomeRNAi:36993 NextBio:801402 Uniprot:A1ZAW0
Length = 1722
Score = 191 (72.3 bits), Expect = 5.0e-18, Sum P(2) = 5.0e-18
Identities = 41/106 (38%), Positives = 64/106 (60%)
Query: 37 FYVENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQ 93
+Y+E + Y FK++R L +ALTH SY + SYQ LEFIGDA L +S Y+F +
Sbjct: 1434 YYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTK 1493
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
++PG L+ LR+A ++ LA + V+H + F+ A L + + +F
Sbjct: 1494 MNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKF 1539
Score = 111 (44.1 bits), Expect = 5.0e-18, Sum P(2) = 5.0e-18
Identities = 33/119 (27%), Positives = 63/119 (52%)
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL 214
++ PK L D++E++ AA+Y+D DLQ+ W + L EP L+E ++ P+ + +L
Sbjct: 1605 NVDVPKALGDVLEALIAAVYLDCR-DLQRTWEVIFNLFEP--ELQEFTRKV-PINHIRQL 1660
Query: 215 CQ-KNGKQVDIKHWRKNRKNIASVY---VDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
+ K+ K V + + S ++ + K+ AKL+AA+ AL++L++
Sbjct: 1661 VEHKHAKPVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK 1719
Score = 74 (31.1 bits), Expect = 6.8e-05, Sum P(3) = 6.8e-05
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 56 ALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKL 112
A+T SS D +RLE +GD+ L L+ + Y+ Y + G L+ +++ +S L
Sbjct: 1197 AITASSAADVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNL 1253
Score = 39 (18.8 bits), Expect = 6.8e-05, Sum P(3) = 6.8e-05
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 33 EDAVFYVENIINYNFKNKRLLEEAL 57
E FYV N +N K+K ++ L
Sbjct: 947 EQLTFYVHNRGKFNAKSKAKMKVIL 971
Score = 37 (18.1 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 25/99 (25%), Positives = 44/99 (44%)
Query: 196 VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRK--NRKNIASVYVDGSFVASASSEQKE 253
+ LEE QP P+ L +L ++ H K +++ V G F S + +
Sbjct: 1556 ILLEEADVQPTPLDLDDEL-----DMTELPHANKCISQEAEKGVPPKGEFNMSTNVD--- 1607
Query: 254 IAKLNAAREALEKLAQSMPVNC-DVCEIFDDIDEKFEIE 291
+ K A + LE L ++ ++C D+ ++ I FE E
Sbjct: 1608 VPK--ALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPE 1644
>UNIPROTKB|Q6TUI4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0016442 "RNA-induced
silencing complex" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HSSP:P66666 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AY386968 IPI:IPI00715122
RefSeq:NP_976235.1 UniGene:Bt.45343 UniGene:Bt.89150
ProteinModelPortal:Q6TUI4 SMR:Q6TUI4 STRING:Q6TUI4 PRIDE:Q6TUI4
GeneID:337871 KEGG:bta:337871 CTD:23405 HOGENOM:HOG000001567
NextBio:20812451 Uniprot:Q6TUI4
Length = 1923
Score = 248 (92.4 bits), Expect = 7.5e-18, Sum P(2) = 7.5e-18
Identities = 75/249 (30%), Positives = 118/249 (47%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1671 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1730
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL----DDKV-----KEFAEAVSQE- 146
G L+ LR+A ++ A +AVK+ ++K+ + + L DD V K + + E
Sbjct: 1731 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1790
Query: 147 ---DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ I+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1791 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1850
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1851 PRSPVRELLEMEPEITKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1909
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1910 LRSLKANQP 1918
Score = 43 (20.2 bits), Expect = 7.5e-18, Sum P(2) = 7.5e-18
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 24 LTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS 65
L+ PSPE E Y + N + N L + L +T S
Sbjct: 956 LSKFPSPEYETFAEYYKTKYNLDLTN---LNQPLLDVDHTSS 994
>UNIPROTKB|B3DLA6 [details] [associations]
symbol:dicer1 "Endoribonuclease Dicer" species:8364
"Xenopus (Silurana) tropicalis" [GO:0016442 "RNA-induced silencing
complex" evidence=ISS] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EU338242 EMBL:BC167373 RefSeq:NP_001123390.2
UniGene:Str.39540 STRING:B3DLA6 GeneID:100170154 KEGG:xtr:100170154
Xenbase:XB-GENE-491114 Uniprot:B3DLA6
Length = 1893
Score = 246 (91.7 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 81/276 (29%), Positives = 128/276 (46%)
Query: 15 DYRLLKEAMLTSLPSPEMEDAVFYV----ENI---INYNFKNKRLLEEALTHSSY---TD 64
DY LK P+ E + ++ EN INY FKNK L +A TH+SY T
Sbjct: 1609 DYGYLKIPPRCMFEHPDAEKTLDHLISGFENFEKKINYPFKNKAYLLQAFTHASYHYNTI 1668
Query: 65 STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKF 124
+ YQRLEF+GDA L ++ +++ Q PG L+ LR+A ++ A +AVK+ ++K+
Sbjct: 1669 TDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKY 1728
Query: 125 VRHSAAAL----DDKV-----KEFAEAVSQE----DNTAVYGGSIKAPKVLADIVESIAA 171
+ + L DD V K + + E + I+ PK + DI ES+A
Sbjct: 1729 FKAISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAG 1788
Query: 172 AIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNR 231
AIY+D L+ +W ++ +++P++ PV L ++ + K + +
Sbjct: 1789 AIYMDSGMSLETVWHVYYPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGK 1848
Query: 232 KNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+ +V V G IAK AAR AL L
Sbjct: 1849 VRV-TVEVVGKGKFKGVGRSYRIAKSAAARRALRSL 1883
Score = 125 (49.1 bits), Expect = 0.00043, P = 0.00043
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1270 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1329
Query: 109 TEKLARVAVKHG 120
L R+ K G
Sbjct: 1330 NCNLYRLGKKKG 1341
>POMBASE|SPCC188.13c [details] [associations]
symbol:dcr1 "dicer" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005720 "nuclear heterochromatin"
evidence=IC] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006396 "RNA processing" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0031048 "chromatin silencing by small RNA"
evidence=TAS] [GO:0034613 "cellular protein localization"
evidence=IMP] [GO:0035389 "establishment of chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051570 "regulation of histone H3-K9
methylation" evidence=IMP] [GO:0051983 "regulation of chromosome
segregation" evidence=IMP] [GO:0090052 "regulation of chromatin
silencing at centromere" evidence=IMP] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR006935
Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 Pfam:PF04851 PROSITE:PS00517
PROSITE:PS50142 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490
SMART:SM00535 PomBase:SPCC188.13c GO:GO:0005829 GO:GO:0005524
GO:GO:0007059 GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 GO:GO:0003723
GO:GO:0007049 GO:GO:0004386 GO:GO:0031048 GO:GO:0090052
GO:GO:0051570 GO:GO:0030422 GO:GO:0004540 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0051983 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PIR:T39130 RefSeq:NP_588215.2 PDB:2L6M PDBsum:2L6M
ProteinModelPortal:Q09884 STRING:Q09884 EnsemblFungi:SPCC188.13c.1
GeneID:2538930 KEGG:spo:SPCC188.13c OMA:RMCLICN OrthoDB:EOG4PRWZS
NextBio:20800107 GO:GO:0035389 Uniprot:Q09884
Length = 1374
Score = 226 (84.6 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 49/158 (31%), Positives = 85/158 (53%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQ 93
Y+E I Y+FKNK+LL A H S +YQ+LEF+GDA L + Y++ YP
Sbjct: 1085 YIEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYPN 1144
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV-- 151
G+L+ ++ + + L+ + +K+++H +AA+ D + E+ E + TA
Sbjct: 1145 ATSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASEN 1204
Query: 152 --YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI 187
+ I +PK ++D +E++ AI++D F LQ L +
Sbjct: 1205 PWFWFEIDSPKFISDTLEAMICAIFLDSGFSLQSLQFV 1242
>TIGR_CMR|SO_1348 [details] [associations]
symbol:SO_1348 "ribonuclease III" species:211586
"Shewanella oneidensis MR-1" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 RefSeq:NP_716968.1 ProteinModelPortal:Q8EH81
GeneID:1169169 KEGG:son:SO_1348 PATRIC:23522350 Uniprot:Q8EH81
Length = 226
Score = 134 (52.2 bits), Expect = 3.0e-15, Sum P(3) = 3.0e-15
Identities = 31/85 (36%), Positives = 50/85 (58%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
+ Y FKN LL +ALTH S + + +RLEF+GD+ L + +S+ ++ +P+ G LS +
Sbjct: 14 LGYEFKNLDLLTQALTHRSAANKHN-ERLEFLGDSILSIVISDALYHQFPKATEGDLSRM 72
Query: 103 RAANISTEKLARVA--VKHGFYKFV 125
RA + + L +A K G Y F+
Sbjct: 73 RATLVRGDTLTLIAQAFKLGDYLFL 97
Score = 80 (33.2 bits), Expect = 3.0e-15, Sum P(3) = 3.0e-15
Identities = 28/74 (37%), Positives = 38/74 (51%)
Query: 293 AKQKLHE-LCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDA 351
AK L E L G KK P P Y++ EG +HD+ F V+ D + G SR K A
Sbjct: 157 AKTLLQEYLQGLKK-PLPDYQVINIEGDAHDQTF--TVECRIDDLSQSVIGVASSRRK-A 212
Query: 352 ENSAASMMLRALRE 365
E AA+ +L L++
Sbjct: 213 EQIAAAQVLELLKK 226
Score = 67 (28.6 bits), Expect = 3.0e-15, Sum P(3) = 3.0e-15
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
G + +LAD VE+I AIY+D D ++ + ++ E + ++ Q TLL +
Sbjct: 105 GGFRRESILADAVEAIIGAIYLDSDLEVCRQ-LLLNWYAERLAEIQPGINQKDAKTLLQE 163
Query: 214 LCQ 216
Q
Sbjct: 164 YLQ 166
>TIGR_CMR|CJE_1807 [details] [associations]
symbol:CJE_1807 "ribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_179777.1 ProteinModelPortal:Q5HSF8
STRING:Q5HSF8 GeneID:3232434 KEGG:cjr:CJE1807 PATRIC:20045436
BioCyc:CJEJ195099:GJC0-1841-MONOMER Uniprot:Q5HSF8
Length = 224
Score = 176 (67.0 bits), Expect = 6.5e-13, P = 6.5e-13
Identities = 68/232 (29%), Positives = 115/232 (49%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G
Sbjct: 7 LERSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ S A ++ +E +S + G+I
Sbjct: 67 LSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENNGGREKPSILSDALEAII--GAIHL 124
Query: 159 PKVLADIVESIAAAIYVDIDF---DLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLC 215
+ ++IA + ++ +F D + L ++ L+ I T ++ Q PQ T+
Sbjct: 125 EAGF-EFTKTIALRL-IEKNFPQIDAKILIKDYKTKLQEI-TQGKIGQTPQYETVR-AFG 180
Query: 216 QKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+ KQ +I ++ +DG +A A + K+ A+ AA+ ALEKL
Sbjct: 181 PDHLKQFEI-----------ALMLDGKELARAIAGSKKEAQQMAAKIALEKL 221
>TIGR_CMR|NSE_0918 [details] [associations]
symbol:NSE_0918 "ribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0004525 "ribonuclease
III activity" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685 HOGENOM:HOG000246809
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_506782.1
ProteinModelPortal:Q2GCL4 STRING:Q2GCL4 GeneID:3931585
KEGG:nse:NSE_0918 PATRIC:22681823 ProtClustDB:CLSK2528151
BioCyc:NSEN222891:GHFU-920-MONOMER Uniprot:Q2GCL4
Length = 222
Score = 151 (58.2 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 36/93 (38%), Positives = 58/93 (62%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP-G 97
+++++ FKNK LL EALTH S SY+RLEF+GDA L L +++ ++ +P DP G
Sbjct: 6 LQSLLGVYFKNKDLLVEALTHPSVEKCPSYERLEFLGDAVLNLVIASMLYDLFPG-DPEG 64
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAA 130
+LS ++A I LA +A + ++R S++
Sbjct: 65 RLSHRQSALICKNTLAMLARQMNLGDYIRLSSS 97
Score = 66 (28.3 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 25/75 (33%), Positives = 32/75 (42%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLF-ITGDEKSRVKDAE 352
K L EL K P Y + GP+H F +++ DG TG K K E
Sbjct: 153 KSTLQELLQAKGMKPPIYNVINRSGPAHLPIFEIEIRV---DGKKRRATGKSK---KLGE 206
Query: 353 NSAASMMLRALREST 367
+AA MML L+ T
Sbjct: 207 ENAARMMLEELKAET 221
Score = 64 (27.6 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 35/127 (27%), Positives = 58/127 (45%)
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWMIFRGLLEPIVTLEELQQQPQP 207
GG K L +++E++ AI++D + ++K W GL ++E P P
Sbjct: 102 GGRDKTSN-LENVLEALVGAIFLDAGLETVTCFIKKRWY---GLAVQSDSIE-----PNP 152
Query: 208 VTLLFKLCQKNGKQVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAA 260
+ L +L Q G + I + NR A + VDG A+ + K++ + NAA
Sbjct: 153 KSTLQELLQAKGMKPPIYNVI-NRSGPAHLPIFEIEIRVDGK-KRRATGKSKKLGEENAA 210
Query: 261 REALEKL 267
R LE+L
Sbjct: 211 RMMLEEL 217
>TIGR_CMR|CHY_1444 [details] [associations]
symbol:CHY_1444 "ribonuclease III" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004525
"ribonuclease III activity" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_360276.1 ProteinModelPortal:Q3AC58
STRING:Q3AC58 GeneID:3727428 KEGG:chy:CHY_1444 PATRIC:21276019
BioCyc:CHYD246194:GJCN-1443-MONOMER Uniprot:Q3AC58
Length = 235
Score = 173 (66.0 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 65/245 (26%), Positives = 111/245 (45%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT-----DSTSY-QRLEFIGDAALGLALSNYVFLAYP 92
+E I+ +NF N +L A+TH SY + + +RLEF+GDA L L +S+Y+F +P
Sbjct: 9 LEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFISDYLFRTFP 68
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR----HSAAALDDKVKEFAEAVSQEDN 148
Q G L+ LR+ + E L +A K KF+R A + ++ A AV
Sbjct: 69 QKSEGDLTKLRSRLVCAESLYELAFKINLDKFLRLGKGEFKAGGNQRMSNLANAVEAVIG 128
Query: 149 TAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPV 208
+ I+A S +Y + + L + + + TL+EL Q+ +
Sbjct: 129 AVYFDCGIEA-------AFSFITRLYGE-KLKPENLEQLPK---DEKTTLQELLQKEKNN 177
Query: 209 TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268
L +++ + G H + A V ++ +A+ + K+ A+ AA++ALE L
Sbjct: 178 VLRYEILLEEGPP----H---QKIFTAGVIINDKLIATGRGKSKKEAEQEAAKKALELLK 230
Query: 269 QSMPV 273
V
Sbjct: 231 NEKEV 235
>TIGR_CMR|CBU_1503 [details] [associations]
symbol:CBU_1503 "ribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 EMBL:L27436
KO:K03685 HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 PIR:S60767 RefSeq:NP_820486.1
ProteinModelPortal:P51837 GeneID:1209413 KEGG:cbu:CBU_1503
PATRIC:17931771 BioCyc:CBUR227377:GJ7S-1488-MONOMER Uniprot:P51837
Length = 233
Score = 139 (54.0 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 28/84 (33%), Positives = 55/84 (65%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
+ + F N LL+ ALTH S + + + +RLEF+GD+ LG +++ ++ PQ G LS +
Sbjct: 11 LGHQFNNLELLKIALTHCS-SGADNNERLEFLGDSVLGFIIASELYQRRPQAREGDLSRM 69
Query: 103 RAANISTEKLARVAVKHGFYKFVR 126
RA+ ++ ++LA+++ K G ++++
Sbjct: 70 RASMVNGDELAQMSTKLGINEYLQ 93
Score = 53 (23.7 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 154 GSIKAPKVLADIVESIAAAIYVD 176
G + +LAD +E+I AIY+D
Sbjct: 102 GGKRRRSILADALEAIVGAIYID 124
Score = 53 (23.7 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 279 EIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKF 325
E DD+ + + AK L E ++ P P+Y++ K G +H + F
Sbjct: 140 ERVDDLSKLSPKKDAKSLLQEWLQARRLPLPTYEV-KITGEAHAQTF 185
>UNIPROTKB|P0A7Y0 [details] [associations]
symbol:rnc "RNase III" species:83333 "Escherichia coli
K-12" [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IEA;IDA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA;IDA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0006396 EMBL:D64044 EMBL:U36841
GO:GO:0003725 GO:GO:0008033 GO:GO:0016075 GO:GO:0019843
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207 EMBL:M14658
EMBL:X02673 KO:K03685 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK EMBL:X02946 EMBL:M26415 PIR:F65034
RefSeq:NP_417062.1 RefSeq:YP_490795.1 ProteinModelPortal:P0A7Y0
SMR:P0A7Y0 DIP:DIP-48223N IntAct:P0A7Y0 MINT:MINT-1227120
PhosSite:P010446 PaxDb:P0A7Y0 PRIDE:P0A7Y0
EnsemblBacteria:EBESCT00000001804 EnsemblBacteria:EBESCT00000001805
EnsemblBacteria:EBESCT00000015272 GeneID:12931603 GeneID:947033
KEGG:ecj:Y75_p2520 KEGG:eco:b2567 PATRIC:32120533 EchoBASE:EB0850
EcoGene:EG10857 BioCyc:EcoCyc:EG10857-MONOMER
BioCyc:ECOL316407:JW2551-MONOMER BioCyc:MetaCyc:EG10857-MONOMER
Genevestigator:P0A7Y0 Uniprot:P0A7Y0
Length = 226
Score = 137 (53.3 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
+ Y F ++ LL++ALTH S S +RLEF+GD+ L ++N ++ +P++D G +S +
Sbjct: 13 LGYTFNHQELLQQALTHRS-ASSKHNERLEFLGDSILSYVIANALYHRFPRVDEGDMSRM 71
Query: 103 RAANISTEKLARVA 116
RA + LA +A
Sbjct: 72 RATLVRGNTLAELA 85
Score = 75 (31.5 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 282 DDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFIT 341
D+I + + K +L E + P P+Y + + G +HD++F Q++ + T
Sbjct: 145 DEISPGDKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGT 204
Query: 342 GDEKSRVKDAENSAASMMLRAL 363
G SR K AE +AA L+ L
Sbjct: 205 GS--SRRK-AEQAAAEQALKKL 223
Score = 54 (24.1 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 30/124 (24%), Positives = 53/124 (42%)
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFD-LQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G + +LAD VE++ +++D D ++KL I + + +Q P T L
Sbjct: 104 GGFRRESILADTVEALIGGVFLDSDIQTVEKL--ILNWYQTRLDEISPGDKQKDPKTRLQ 161
Query: 213 KLCQKNGKQ------VDIKHWRKNRKNIASVYVDG---SFVASASSEQKEIAKLNAAREA 263
+ Q V ++ +++ V G V + SS +K A+ AA +A
Sbjct: 162 EYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRK--AEQAAAEQA 219
Query: 264 LEKL 267
L+KL
Sbjct: 220 LKKL 223
>TIGR_CMR|DET_1025 [details] [associations]
symbol:DET_1025 "ribonuclease III" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
TIGRFAMs:TIGR02191 HOGENOM:HOG000246808 OMA:LTHKSCK
RefSeq:YP_181741.1 ProteinModelPortal:Q3Z7Q8 STRING:Q3Z7Q8
GeneID:3229696 KEGG:det:DET1025 PATRIC:21609095
ProtClustDB:CLSK837151 BioCyc:DETH243164:GJNF-1026-MONOMER
Uniprot:Q3Z7Q8
Length = 237
Score = 168 (64.2 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 60/238 (25%), Positives = 113/238 (47%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYP 92
+E + F+N LLE+AL H+S+ + S S +R+EF+GDA LG+ ++ ++ +P
Sbjct: 7 LEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRLYHDFP 66
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ G L+ R+ + E L RVA+ K++ + D F A N A
Sbjct: 67 DIQEGDLTRFRSLLVRRESLVRVALGINLGKYL-YLGRGEDASKGRFKPA-----NLAGA 120
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
++ A L +++ I+ +++++ + + + L+EL Q +T +
Sbjct: 121 FEAVLAAIYLDKGIDATREVIFRLFKTEMERVQTLSSNI-DYKSRLQELVQAQFQLTPRY 179
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270
++ +G + H N IA VY + +A S K+ A+ +AA+EAL++ S
Sbjct: 180 RIIDFSGPE----H---NHLFIAEVYTEDKVLAEGSGRSKKEAETSAAKEALQQFENS 230
>TIGR_CMR|BA_3987 [details] [associations]
symbol:BA_3987 "ribonuclease III" species:198094 "Bacillus
anthracis str. Ames" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 ProtClustDB:PRK00102 TIGRFAMs:TIGR02191
RefSeq:NP_846229.1 RefSeq:YP_020627.1 RefSeq:YP_029951.1
ProteinModelPortal:Q81WI8 DNASU:1087539
EnsemblBacteria:EBBACT00000008054 EnsemblBacteria:EBBACT00000016917
EnsemblBacteria:EBBACT00000023512 GeneID:1087539 GeneID:2816770
GeneID:2849362 KEGG:ban:BA_3987 KEGG:bar:GBAA_3987 KEGG:bat:BAS3700
HOGENOM:HOG000246808 OMA:LTHKSCK
BioCyc:BANT260799:GJAJ-3758-MONOMER
BioCyc:BANT261594:GJ7F-3875-MONOMER Uniprot:Q81WI8
Length = 245
Score = 164 (62.8 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 62/235 (26%), Positives = 109/235 (46%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I F +++LL +A THSSY + +RLEF+GDA L L +S Y+F YP +
Sbjct: 26 IGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSE 85
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRAA + L R A + F V +E ++ D + G++
Sbjct: 86 GELTKLRAAIVCEPSLVRFANELSFGSLVLLGKGEEMTGGRERPALLA--DVFEAFIGAL 143
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
+ L + + +Y I+ F +++ L+EL Q+ + +++ Q
Sbjct: 144 YLDQGLETVWGFLKEIVYPKINEGA------FSHVMDYKSQLQELIQRDGSGNIEYQILQ 197
Query: 217 KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSM 271
+ G H NR+ ++ V ++ + S + K+ A+ AA EAL+KL + +
Sbjct: 198 EKGPA----H---NREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKKLKEQL 245
>TIGR_CMR|GSU_2228 [details] [associations]
symbol:GSU_2228 "ribonuclease III" species:243231
"Geobacter sulfurreducens PCA" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 TIGRFAMs:TIGR02191 OMA:LTHKSCK
RefSeq:NP_953277.1 ProteinModelPortal:Q74AX1 GeneID:2687587
KEGG:gsu:GSU2228 PATRIC:22027311 ProtClustDB:CLSK828768
BioCyc:GSUL243231:GH27-2184-MONOMER Uniprot:Q74AX1
Length = 248
Score = 133 (51.9 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 33/92 (35%), Positives = 50/92 (54%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLALSNYVFLAYP 92
+E I Y F ++R L+EALTH S+ + +RLEF GDA LG + + YP
Sbjct: 19 LETSIGYRFTDRRFLDEALTHRSWLNEVRSPTVPDNERLEFFGDAILGFCIGKMLLRHYP 78
Query: 93 QLDPGQLSLLRAANISTEKLARVA--VKHGFY 122
+ G L+ +++A + E LA +A V+ G Y
Sbjct: 79 ESREGALARMKSALVGEETLADLAAAVELGSY 110
Score = 64 (27.6 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 21/70 (30%), Positives = 30/70 (42%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K EL + P Y + GP+HD +F A + L G +S+ K+AE
Sbjct: 174 KTDFQELAQAQYGGLPRYVLVDTSGPAHDLRFTVAAYVGER---LLGQGTGRSK-KEAEQ 229
Query: 354 SAASMMLRAL 363
+AA L L
Sbjct: 230 AAARQCLERL 239
Score = 40 (19.1 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 7/16 (43%), Positives = 14/16 (87%)
Query: 161 VLADIVESIAAAIYVD 176
+LA+ +E++ AA+Y+D
Sbjct: 128 LLANALEALLAAMYLD 143
>UNIPROTKB|Q9KPB2 [details] [associations]
symbol:rnc "Ribonuclease 3" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 117 (46.2 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
+ Y FK LL ALTH S + +RLEF+GD+ L +++ ++ +P+++ G +S +
Sbjct: 12 LGYTFKETELLNLALTHRS-ANGKHNERLEFLGDSILSFVIADELYRRFPKVNEGDMSRM 70
Query: 103 RAANISTEKLARV 115
RA + LA +
Sbjct: 71 RATLVRGNTLAEL 83
Score = 78 (32.5 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 294 KQKLHE-LCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAE 352
K +L E L G++K P P Y + +G +H+++F A ++A D + G SR K AE
Sbjct: 156 KTRLQEFLQGRRK-PLPVYTVTNIKGEAHNQEFTVACEVAGMDTP--VIGKGTSRRK-AE 211
Query: 353 NSAASMMLRAL 363
+AA L L
Sbjct: 212 QAAAETALEQL 222
Score = 78 (32.5 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 36/125 (28%), Positives = 57/125 (45%)
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIVTLEELQQQPQPVTLL 211
G + +LAD VE+I AIY+D D + + ++ + G LE I + Q P T L
Sbjct: 103 GGFRRDSILADAVEAIIGAIYLDSDLETARSIVLEWYHGRLEEI---KPGASQKDPKTRL 159
Query: 212 FKLCQKNGKQV------DIKHWRKNRKNIASVYVDGS---FVASASSEQKEIAKLNAARE 262
+ Q K + +IK N++ + V G + +S +K A+ AA
Sbjct: 160 QEFLQGRRKPLPVYTVTNIKGEAHNQEFTVACEVAGMDTPVIGKGTSRRK--AEQAAAET 217
Query: 263 ALEKL 267
ALE+L
Sbjct: 218 ALEQL 222
>TIGR_CMR|VC_2461 [details] [associations]
symbol:VC_2461 "ribonuclease III" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 117 (46.2 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
+ Y FK LL ALTH S + +RLEF+GD+ L +++ ++ +P+++ G +S +
Sbjct: 12 LGYTFKETELLNLALTHRS-ANGKHNERLEFLGDSILSFVIADELYRRFPKVNEGDMSRM 70
Query: 103 RAANISTEKLARV 115
RA + LA +
Sbjct: 71 RATLVRGNTLAEL 83
Score = 78 (32.5 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 294 KQKLHE-LCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAE 352
K +L E L G++K P P Y + +G +H+++F A ++A D + G SR K AE
Sbjct: 156 KTRLQEFLQGRRK-PLPVYTVTNIKGEAHNQEFTVACEVAGMDTP--VIGKGTSRRK-AE 211
Query: 353 NSAASMMLRAL 363
+AA L L
Sbjct: 212 QAAAETALEQL 222
Score = 78 (32.5 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 36/125 (28%), Positives = 57/125 (45%)
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIVTLEELQQQPQPVTLL 211
G + +LAD VE+I AIY+D D + + ++ + G LE I + Q P T L
Sbjct: 103 GGFRRDSILADAVEAIIGAIYLDSDLETARSIVLEWYHGRLEEI---KPGASQKDPKTRL 159
Query: 212 FKLCQKNGKQV------DIKHWRKNRKNIASVYVDGS---FVASASSEQKEIAKLNAARE 262
+ Q K + +IK N++ + V G + +S +K A+ AA
Sbjct: 160 QEFLQGRRKPLPVYTVTNIKGEAHNQEFTVACEVAGMDTPVIGKGTSRRK--AEQAAAET 217
Query: 263 ALEKL 267
ALE+L
Sbjct: 218 ALEQL 222
>TIGR_CMR|APH_1149 [details] [associations]
symbol:APH_1149 "ribonuclease III" species:212042
"Anaplasma phagocytophilum HZ" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
RefSeq:YP_505691.1 HSSP:Q9X0I6 ProteinModelPortal:Q2GIW0
STRING:Q2GIW0 GeneID:3930479 KEGG:aph:APH_1149 PATRIC:20951072
HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
BioCyc:APHA212042:GHPM-1155-MONOMER TIGRFAMs:TIGR02191
Uniprot:Q2GIW0
Length = 236
Score = 133 (51.9 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 33/93 (35%), Positives = 49/93 (52%)
Query: 30 PEMEDAVFY----VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLAL 83
P ED++ V I Y F++ LL+ A+TH S SY+RLEF+GDA LGL +
Sbjct: 3 PYSEDSILALTEKVFKISGYRFQDHELLKTAVTHPSIAAERYASYERLEFLGDAVLGLVV 62
Query: 84 SNYVFLAYPQLDPGQLSLLRAANISTEKLARVA 116
S ++ +P G L+ R A + K+ +A
Sbjct: 63 SEMLYTLFPDDSEGLLTKKRIALVRGSKVVEIA 95
Score = 58 (25.5 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 290 IEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVK 349
++ AK L E + PSY++ G H F V++ + TG +K K
Sbjct: 162 LQDAKTALQEWAQGHNFAIPSYRLINKSGLEHAPVF--TVEVTVNGQRVHATGCKK---K 216
Query: 350 DAENSAASMML 360
AE +AA +ML
Sbjct: 217 YAEIAAAKLML 227
Score = 45 (20.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 33/125 (26%), Positives = 59/125 (47%)
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-LEELQQQPQPVTLLF 212
G I L + +E++ AIYVD + + +++ +P+ T L + Q T L
Sbjct: 114 GGISNNSNLENALEALIGAIYVDGGLESVRHFILQHW--KPLATNLADTPLQDAK-TALQ 170
Query: 213 KLCQKNGKQVDIKHWRK-NRKNI--ASVY-----VDGSFVASASSEQKEIAKLNAAREAL 264
+ Q G I +R N+ + A V+ V+G V A+ +K+ A++ AA+ L
Sbjct: 171 EWAQ--GHNFAIPSYRLINKSGLEHAPVFTVEVTVNGQRV-HATGCKKKYAEIAAAKLML 227
Query: 265 EKLAQ 269
EK+ +
Sbjct: 228 EKVTK 232
>TIGR_CMR|CPS_4122 [details] [associations]
symbol:CPS_4122 "ribonuclease III" species:167879
"Colwellia psychrerythraea 34H" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 TIGRFAMs:TIGR02191 OMA:LTHKSCK
RefSeq:YP_270777.1 ProteinModelPortal:Q47WP5 STRING:Q47WP5
GeneID:3521712 KEGG:cps:CPS_4122 PATRIC:21471107
BioCyc:CPSY167879:GI48-4135-MONOMER Uniprot:Q47WP5
Length = 266
Score = 119 (46.9 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
+ Y F LL +ALTH S + + +RLEF+GD+ LG ++ ++ +P+ D G L+ +
Sbjct: 15 LGYEFNEPLLLVQALTHRSAKGAHN-ERLEFLGDSILGFVIAEALYDKFPKHDEGDLTRM 73
Query: 103 RAANISTEKLARVA 116
R++ + LA VA
Sbjct: 74 RSSLVKGVTLAEVA 87
Score = 77 (32.2 bits), Expect = 9.4e-09, Sum P(2) = 9.4e-09
Identities = 25/72 (34%), Positives = 36/72 (50%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K +L E +K P P+Y++ G SH+++F Q + V+ G SR K AE
Sbjct: 159 KTRLQEFLQGRKIPLPTYEVIDTTGQSHNQEFTVRCQTSVISEVVIAKGT--SRRK-AEQ 215
Query: 354 SAASMMLRALRE 365
AA +L AL E
Sbjct: 216 EAAQQIL-ALIE 226
Score = 57 (25.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 15/64 (23%), Positives = 33/64 (51%)
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGK 220
+L D +E+I A+Y+D + + K +I ++ ++ +Q P T L + Q G+
Sbjct: 113 ILEDAIEAIIGAVYLDSNIECCKA-LILSWFERRLMVIKPGNEQKDPKTRLQEFLQ--GR 169
Query: 221 QVDI 224
++ +
Sbjct: 170 KIPL 173
>UNIPROTKB|Q61XX9 [details] [associations]
symbol:drsh-1 "Ribonuclease 3" species:6238 "Caenorhabditis
briggsae" [GO:0004525 "ribonuclease III activity" evidence=ISS]
[GO:0019953 "sexual reproduction" evidence=ISS] [GO:0031053
"primary miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005634 GO:GO:0030154
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0007506 GO:GO:0003725
GO:GO:0016075 GO:GO:0019953 GO:GO:0006364 EMBL:HE600906
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
GO:GO:0031053 PANTHER:PTHR11207 KO:K03685 RefSeq:XP_002639240.1
HSSP:O67082 ProteinModelPortal:Q61XX9 EnsemblMetazoa:CBG03798
GeneID:8581234 KEGG:cbr:CBG03798 CTD:8581234 WormBase:CBG03798
HOGENOM:HOG000154167 OMA:FNIMGGE Uniprot:Q61XX9
Length = 1061
Score = 159 (61.0 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 67/250 (26%), Positives = 113/250 (45%)
Query: 29 SPEMEDAVFY-VENIINYNFKNKRLLEEALTHSS--YTDSTS--YQRLEFIGDAALGLAL 83
+P + D F+ +E II F N RLL +A T + + D T QRLE++GD+ L L +
Sbjct: 805 TPALTD--FHRLEQIIGIEFNNIRLLAKAFTRRNVPFNDLTKGHNQRLEWLGDSVLQLII 862
Query: 84 SNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDD-KVKEFAEA 142
S+Y++ +P G +SLLR + +S + + V GF +FV + +D K+K+ A+
Sbjct: 863 SDYLYRNFPLHHEGHMSLLRTSLVSNQTQSVVCDDLGFQEFVIKAPHRKNDLKMKDKADL 922
Query: 143 VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI--DFDLQKLWMIFRGLLEPIVTLEE 200
V + G++ K L + S ++ F + W + L+
Sbjct: 923 VE------AFIGALYVDKGL-EYCRSFIRTVFCPRLKHFINSEKWNDAKSHLQQWCLAIR 975
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
+ P P ++L G NR +VY G ++SA++ A+L AA
Sbjct: 976 DSRNPNPAMPEYRLLGIQGPT-------NNRIFRVAVYFRGERLSSAAASNMHTAELKAA 1028
Query: 261 REALEKLAQS 270
AL L ++
Sbjct: 1029 ENALAALEKA 1038
>WB|WBGene00000939 [details] [associations]
symbol:dcr-1 species:6239 "Caenorhabditis elegans"
[GO:0004525 "ribonuclease III activity" evidence=IEA;IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016891
"endoribonuclease activity, producing 5'-phosphomonoesters"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0040010 "positive regulation
of growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006952 "defense response" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0010467 "gene expression"
evidence=IMP] [GO:0007126 "meiosis" evidence=IMP] [GO:0045132
"meiotic chromosome segregation" evidence=IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IMP] [GO:0040034 "regulation of development,
heterochronic" evidence=IMP] [GO:0031050 "dsRNA fragmentation"
evidence=IDA] [GO:0035262 "gonad morphogenesis" evidence=IMP]
[GO:0004530 "deoxyribonuclease I activity" evidence=IDA]
[GO:0000737 "DNA catabolic process, endonucleolytic" evidence=IDA]
[GO:0006401 "RNA catabolic process" evidence=IDA] [GO:0006309
"apoptotic DNA fragmentation" evidence=IGI] [GO:0031054 "pre-miRNA
processing" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005829 GO:GO:0005524 GO:GO:0002009
GO:GO:0018991 GO:GO:0040010 GO:GO:0006952 GO:GO:0002119
GO:GO:0046872 GO:GO:0040011 GO:GO:0006401 GO:GO:0040035
GO:GO:0003725 GO:GO:0045132 SUPFAM:SSF101690 GO:GO:0031054
GO:GO:0030422 GO:GO:0040034 GO:GO:0006309 GO:GO:0016075
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:FO081380
GO:GO:0008026 GO:GO:0035262 eggNOG:COG1111 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PIR:S44849 RefSeq:NP_498761.2
DIP:DIP-25340N IntAct:P34529 MINT:MINT-1040079 STRING:P34529
PaxDb:P34529 EnsemblMetazoa:K12H4.8 GeneID:176138
KEGG:cel:CELE_K12H4.8 UCSC:K12H4.8 CTD:42693 WormBase:K12H4.8
GeneTree:ENSGT00510000046789 HOGENOM:HOG000022395 InParanoid:P34529
NextBio:891290 GO:GO:0004530 Uniprot:P34529
Length = 1910
Score = 161 (61.7 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 39/112 (34%), Positives = 60/112 (53%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E I Y FK + L +A TH+SY ++ YQRLEF+GDA L ++ Y+F Q
Sbjct: 1646 LEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDSRQYS 1705
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
PG L+ LR+A ++ A +AVK F K L +++F + S+ +
Sbjct: 1706 PGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSERN 1757
Score = 102 (41.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 38/153 (24%), Positives = 63/153 (41%)
Query: 119 HGFYKFVRH-SAAALDDKVK-EFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD 176
H KFV+ S D E ++E+ I+ PK + DI ES+A AIY+D
Sbjct: 1744 HMIEKFVKLCSERNFDTNFNAEMYMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLD 1803
Query: 177 IDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIAS 236
+L W + ++ + L P+ L + Q + ++ ++ K +
Sbjct: 1804 SGRNLDTTWQVIFHMMRGTIELCCANPPRSPIRELMEFEQSKVRFSKMERILESGKVRVT 1863
Query: 237 VYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
V V + + IAK AA+ AL+ L Q
Sbjct: 1864 VEVVNNMRFTGMGRNYRIAKATAAKRALKYLHQ 1896
Score = 97 (39.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 28/93 (30%), Positives = 47/93 (50%)
Query: 33 EDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYP 92
E+ V ++++ I + LL ALT S+ D S +R E IGD+ L A ++Y++
Sbjct: 1378 EEYVSHIDSDIGLGV-SPCLLLTALTTSNAADGMSLERFETIGDSFLKFATTDYLYHTLL 1436
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFV 125
G+LS R+ +S L R+ K G + +
Sbjct: 1437 DQHEGKLSFARSKEVSNCNLYRLGKKLGIPQLI 1469
>FB|FBgn0026722 [details] [associations]
symbol:drosha "drosha" species:7227 "Drosophila melanogaster"
[GO:0031053 "primary miRNA processing" evidence=ISS;IMP]
[GO:0005634 "nucleus" evidence=ISS] [GO:0004525 "ribonuclease III
activity" evidence=ISS;NAS] [GO:0003725 "double-stranded RNA
binding" evidence=IEA;ISS] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030727
"germarium-derived female germ-line cyst formation" evidence=IMP]
[GO:0007294 "germarium-derived oocyte fate determination"
evidence=IMP] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 EMBL:AE013599 GO:GO:0007294 GO:GO:0022008
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 GO:GO:0016075
GO:GO:0030727 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 GO:GO:0031053 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 KO:K03685 HSSP:O67082 OMA:RFHKSLD
CTD:29102 ChiTaRS:DROSHA EMBL:AF116572 EMBL:BT023503
RefSeq:NP_477436.1 UniGene:Dm.4482 SMR:Q7KNF1 IntAct:Q7KNF1
STRING:Q7KNF1 EnsemblMetazoa:FBtr0088850 GeneID:35747
KEGG:dme:Dmel_CG8730 UCSC:CG8730-RA FlyBase:FBgn0026722
InParanoid:Q7KNF1 OrthoDB:EOG4BRV1K GenomeRNAi:35747 NextBio:795024
Uniprot:Q7KNF1
Length = 1327
Score = 159 (61.0 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 70/268 (26%), Positives = 117/268 (43%)
Query: 10 RATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSS--YTDST- 66
R+ + YR+LKE LT + ED+ I FK+ RLL A T S +T T
Sbjct: 963 RSCIDSYRVLKE--LT-----KFEDS-------IGIKFKHIRLLARAFTDRSIGFTHLTL 1008
Query: 67 -SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFV 125
S QRLEF+GD L L S Y++ +P+ G LSLLR++ ++ A V G K+
Sbjct: 1009 GSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYA 1068
Query: 126 RHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDID-FDLQKL 184
++ D K K+ A+ + + G++ K L + ++ + F + +
Sbjct: 1069 VYANPKADLKTKDRADLLE------AFLGALYVDKGLLYCEQFCHVCLFPRLQLFIMNQD 1122
Query: 185 WMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFV 244
W + L+ +P +K+ + +G R +VY +
Sbjct: 1123 WNDPKSKLQQCCLTLRTMDGGEPDIPYYKVVEASGPT-------NTRVYKVAVYFRSKRL 1175
Query: 245 ASASSEQKEIAKLNAAREALEKLAQSMP 272
A++S + A++NAA++ALE P
Sbjct: 1176 ATSSGSSIQQAEMNAAKQALENSRDLFP 1203
Score = 109 (43.4 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 59 HSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVK 118
H + ++ T +RLEF+GDA + S ++F +P+L+ G L+ RAA + + LA +A K
Sbjct: 823 HETVSNITHNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKK 882
Query: 119 HGFYKFVRHS 128
+F+ ++
Sbjct: 883 LQLEEFMLYA 892
Score = 72 (30.4 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS 65
+E I Y FKN+ LL+ ALTH SY ++
Sbjct: 746 LEESIGYRFKNRYLLQLALTHPSYKEN 772
Score = 47 (21.6 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 309 PSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRE 365
P YK+ + GP++ + + AV + + S ++ AE +AA L R+
Sbjct: 1148 PYYKVVEASGPTNTRVYKVAVYFRSKR----LATSSGSSIQQAEMNAAKQALENSRD 1200
>TIGR_CMR|SPO_3198 [details] [associations]
symbol:SPO_3198 "ribonuclease III" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 HOGENOM:HOG000246809 OMA:RACELPR
TIGRFAMs:TIGR02191 RefSeq:YP_168401.1 ProteinModelPortal:Q5LNK5
GeneID:3195258 KEGG:sil:SPO3198 PATRIC:23379843
ProtClustDB:CLSK934087 Uniprot:Q5LNK5
Length = 225
Score = 114 (45.2 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 30/76 (39%), Positives = 40/76 (52%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSY--QRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+ Y+F+ LL ALTH S + ST QRLEF+GD LGL ++ + A GQL+
Sbjct: 14 LGYSFERPELLVRALTHGSISSSTRQDNQRLEFLGDRVLGLVMATALLEADKDATEGQLA 73
Query: 101 LLRAANISTEKLARVA 116
A + E A VA
Sbjct: 74 PRFNALVRKETCAEVA 89
Score = 56 (24.8 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 22/72 (30%), Positives = 31/72 (43%)
Query: 293 AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLF-ITGDEKSRVKDA 351
AK L E + P Y++ K GP H F ++A DG T K + A
Sbjct: 158 AKTALQEWAQARGQTPPRYELVKRSGPDHAPVFTILAELA--DGRRAEATAGAK---RQA 212
Query: 352 ENSAASMMLRAL 363
E +AA +L +L
Sbjct: 213 EQAAARKLLDSL 224
Score = 40 (19.1 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 234 IASVYVDGSFVAS 246
IA+VY DG F A+
Sbjct: 124 IAAVYRDGGFAAA 136
>ASPGD|ASPL0000041548 [details] [associations]
symbol:dclB species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001650
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
GO:GO:0005524 GO:GO:0046872 EMBL:BN001306 GO:GO:0051607
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AACD01000052
ProteinModelPortal:P0C5H7 HOGENOM:HOG000048683 OrthoDB:EOG4JWZNK
Uniprot:P0C5H7
Length = 1429
Score = 136 (52.9 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 38/116 (32%), Positives = 63/116 (54%)
Query: 39 VENIINYNFKNKRLLEEALTHSS--Y-TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+EN I Y FK+K LL EALTH S Y T SYQRLEF+GDA L + + + + + +
Sbjct: 1059 LENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAHHVECQ 1118
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHS--AAALDDKVKEFAEAVSQEDNT 149
G+++ ++ A ++ LA + ++ +K+ S ++D + E +S T
Sbjct: 1119 QGEMTKIKHAIVNGHLLAFLCMQ---FKWAMPSPLTPSIDTGTETETEIISPPPKT 1171
Score = 65 (27.9 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 147 DNTAVYGGS----IKAPKVLADIVESIAAAIYVDIDFDL 181
+NT Y S I A K +D+VESI AI+VD DL
Sbjct: 1215 NNTTAYPWSLFSAIHADKFFSDVVESIIGAIFVDSGGDL 1253
>POMBASE|SPBC119.11c [details] [associations]
symbol:pac1 "double-strand-specific ribonuclease Pac1"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0016180
"snRNA processing" evidence=IMP] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IMP] [GO:0032296
"double-stranded RNA-specific ribonuclease activity" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 PomBase:SPBC119.11c InterPro:IPR014720 GO:GO:0007126
GO:GO:0005730 GO:GO:0046872 EMBL:CU329671 Gene3D:3.30.160.20
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0003725 GO:GO:0016075
GO:GO:0006364 GO:GO:0031137 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 PANTHER:PTHR11207 GO:GO:0032296 GO:GO:0016180
EMBL:X54998 EMBL:X53769 EMBL:S78982 EMBL:AY695821 EMBL:AY695822
PIR:S12605 RefSeq:NP_595292.1 ProteinModelPortal:P22192
STRING:P22192 EnsemblFungi:SPBC119.11c.1 GeneID:2540084
KEGG:spo:SPBC119.11c KO:K03685 OMA:PKIANIT OrthoDB:EOG40ZV6Z
NextBio:20801221 GermOnline:SPBC119.11c Uniprot:P22192
Length = 363
Score = 119 (46.9 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 69 QRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHS 128
+RLEF+GD+ L + +F +PQ+D G LS LRA + E + A +GF K + S
Sbjct: 172 ERLEFLGDSFFNLFTTRIIFSKFPQMDEGSLSKLRAKFVGNESADKFARLYGFDKTLVLS 231
Query: 129 AAALDDKVKEFAEAVSQEDNTAVYGGSI 156
+A D++++ + ++ D Y G++
Sbjct: 232 YSAEKDQLRKSQKVIA--DTFEAYLGAL 257
Score = 67 (28.6 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 35/119 (29%), Positives = 53/119 (44%)
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
K+ KV+AD E+ A+ +D + W + R LL+P + +Q+ P KL
Sbjct: 241 KSQKVIADTFEAYLGALILDGQEETAFQW-VSR-LLQPKIANITVQR-PIDKLAKSKLFH 297
Query: 217 KNGKQVDIKH-WRKNRKNIASVYV-----DGSFVASASSEQKEIAKLNAAREALEKLAQ 269
K I++ W A YV +G VA A ++ A AA +ALE LA+
Sbjct: 298 KYSTLGHIEYRWVDGAGGSAEGYVIACIFNGKEVARAWGANQKDAGSRAAMQALEVLAK 356
>UNIPROTKB|P66666 [details] [associations]
symbol:rnc "Ribonuclease 3" species:1773 "Mycobacterium
tuberculosis" [GO:0040007 "growth" evidence=IMP] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005737 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
EMBL:BX842581 GO:GO:0016075 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 ProtClustDB:PRK00102 TIGRFAMs:TIGR02191
HOGENOM:HOG000246808 OMA:LTHKSCK PIR:E70748 RefSeq:NP_217441.1
RefSeq:NP_337508.1 RefSeq:YP_006516379.1 PDB:2A11 PDBsum:2A11
ProteinModelPortal:P66666 SMR:P66666 PRIDE:P66666
EnsemblBacteria:EBMYCT00000002463 EnsemblBacteria:EBMYCT00000072869
GeneID:13317719 GeneID:887873 GeneID:925280 KEGG:mtc:MT2995
KEGG:mtu:Rv2925c KEGG:mtv:RVBD_2925c PATRIC:18128352
TubercuList:Rv2925c EvolutionaryTrace:P66666 Uniprot:P66666
Length = 240
Score = 136 (52.9 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 68/232 (29%), Positives = 103/232 (44%)
Query: 52 LLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANI 107
LL ALTH SY + +RLEF+GDA LGL +++ +F +P G L+ LRA+ +
Sbjct: 20 LLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVV 79
Query: 108 STEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVE 167
+T+ LA VA R A L V E NT GG+ K+ +LAD +E
Sbjct: 80 NTQALADVAR--------RLCAEGLGVHVL----LGRGEANT---GGADKS-SILADGME 123
Query: 168 SIAAAIYVDIDFDLQK--LWMIFRGLLEPIVTLE---ELQQQPQPVTLLFKLCQKNGKQV 222
S+ AIY+ + + + +F LL+ TL + + Q +T L +
Sbjct: 124 SLLGAIYLQHGMEKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVT 183
Query: 223 DIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR--EALEKLAQSMP 272
V +D + + +KE + AA +ALE L +MP
Sbjct: 184 STGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLDNAMP 235
>CGD|CAL0001312 [details] [associations]
symbol:DCR1 species:5476 "Candida albicans" [GO:0004525
"ribonuclease III activity" evidence=TAS] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=TAS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IMP;IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=IMP] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0034473 "U1 snRNA 3'-end processing"
evidence=IEA] [GO:0006325 "chromatin organization" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0030847 "termination of RNA polymerase II
transcription, exosome-dependent" evidence=IEA] [GO:0034475 "U4
snRNA 3'-end processing" evidence=IEA] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720 CGD:CAL0001312
GO:GO:0005737 GO:GO:0046872 GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0008033 GO:GO:0030422 GO:GO:0016075
GO:GO:0019843 EMBL:AACQ01000057 GO:GO:0006364 GO:GO:0004525
GO:GO:0035196 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 GO:GO:0003968 RefSeq:XP_717201.1
ProteinModelPortal:Q5A694 STRING:Q5A694 GeneID:3641164
KEGG:cal:CaO19.3796 Uniprot:Q5A694
Length = 611
Score = 115 (45.5 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 41/160 (25%), Positives = 80/160 (50%)
Query: 24 LTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLAL 83
L + P++ + VF ++ +N NK+ LE H ++ + +RLEF GD+ L
Sbjct: 239 LPPINDPKLFERVFIHKSTVN----NKQYLEA--NHLLHSHN---ERLEFYGDSILNNLA 289
Query: 84 SNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV 143
+ +F +P G LS +R+ +S + L ++A ++GF K +R + DD +K + +
Sbjct: 290 TLIIFKEFPDSTEGDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSRIS--DDVLKTGDKKI 347
Query: 144 SQEDNTAVYGG-SIKAPKVLADIVESIAAAIYVDIDFDLQ 182
+ A G +++ L D+ E +A +Y + +L+
Sbjct: 348 FADVFEAYIGALAMERGFDLEDVKEWLAK-VYAPLIHELK 386
Score = 67 (28.6 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 248 SSEQKEIA-KLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKW 306
+++++E+A +L R L S P+ + I + +E +I+A K KL+ + G+K
Sbjct: 488 NAKKREVAERLEQERNNLPSTPSS-PIRTSMFPISVNENEPLDIDA-KNKLYGILGRKIG 545
Query: 307 PKPSYKIEKDEG 318
KP+Y + G
Sbjct: 546 DKPAYLTSQING 557
>UNIPROTKB|Q5A694 [details] [associations]
symbol:RNT1 "Probable ribonuclease III" species:237561
"Candida albicans SC5314" [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IDA] [GO:0004525 "ribonuclease III activity"
evidence=TAS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=TAS] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 CGD:CAL0001312 GO:GO:0005737 GO:GO:0046872
GO:GO:0006397 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033
GO:GO:0030422 GO:GO:0016075 GO:GO:0019843 EMBL:AACQ01000057
GO:GO:0006364 GO:GO:0004525 GO:GO:0035196 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
GO:GO:0003968 RefSeq:XP_717201.1 ProteinModelPortal:Q5A694
STRING:Q5A694 GeneID:3641164 KEGG:cal:CaO19.3796 Uniprot:Q5A694
Length = 611
Score = 115 (45.5 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 41/160 (25%), Positives = 80/160 (50%)
Query: 24 LTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLAL 83
L + P++ + VF ++ +N NK+ LE H ++ + +RLEF GD+ L
Sbjct: 239 LPPINDPKLFERVFIHKSTVN----NKQYLEA--NHLLHSHN---ERLEFYGDSILNNLA 289
Query: 84 SNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV 143
+ +F +P G LS +R+ +S + L ++A ++GF K +R + DD +K + +
Sbjct: 290 TLIIFKEFPDSTEGDLSKIRSKLVSNKTLIKIAFQYGFDKKLRSRIS--DDVLKTGDKKI 347
Query: 144 SQEDNTAVYGG-SIKAPKVLADIVESIAAAIYVDIDFDLQ 182
+ A G +++ L D+ E +A +Y + +L+
Sbjct: 348 FADVFEAYIGALAMERGFDLEDVKEWLAK-VYAPLIHELK 386
Score = 67 (28.6 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 248 SSEQKEIA-KLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKW 306
+++++E+A +L R L S P+ + I + +E +I+A K KL+ + G+K
Sbjct: 488 NAKKREVAERLEQERNNLPSTPSS-PIRTSMFPISVNENEPLDIDA-KNKLYGILGRKIG 545
Query: 307 PKPSYKIEKDEG 318
KP+Y + G
Sbjct: 546 DKPAYLTSQING 557
>WB|WBGene00009163 [details] [associations]
symbol:drsh-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0000910 "cytokinesis" evidence=IMP] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005634 GO:GO:0009792
GO:GO:0030154 GO:GO:0007052 GO:GO:0046872 Gene3D:3.30.160.20
GO:GO:0007506 GO:GO:0000910 GO:GO:0003725 GO:GO:0016075
GO:GO:0019953 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 GO:GO:0031053 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 EMBL:Z81070 HOGENOM:HOG000154167
EMBL:AF160248 PIR:T21420 RefSeq:NP_001122460.2 RefSeq:NP_492599.1
ProteinModelPortal:O01326 SMR:O01326 STRING:O01326 PaxDb:O01326
EnsemblMetazoa:F26E4.10a GeneID:172830 KEGG:cel:CELE_F26E4.10
UCSC:F26E4.10a CTD:172830 WormBase:F26E4.10a WormBase:F26E4.10b
InParanoid:O01326 OMA:RFHKSLD NextBio:877175 Uniprot:O01326
Length = 1086
Score = 124 (48.7 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 36/110 (32%), Positives = 59/110 (53%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY--TDSTS--YQRLEFIGDAALGLALSNYVFLAYPQL 94
+E + F N RLL +A T + D T QRLE++GD+ L L +S++++ +P
Sbjct: 836 LEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRFPYH 895
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDD-KVKEFAEAV 143
G +SLLR + +S + A V GF +FV + + K+K+ A+ V
Sbjct: 896 HEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAPYKTPELKLKDKADLV 945
Score = 56 (24.8 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 30/120 (25%), Positives = 51/120 (42%)
Query: 163 ADIVESIAAAIYVD--IDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL-LFKLCQKNG 219
AD+VE+ A+YVD I+ + ++F L+ + E+ + + +
Sbjct: 942 ADLVEAFIGALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRDPSS 1001
Query: 220 KQVDIKHWR--------KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSM 271
+ D+ +R NR +VY G +ASA+ A+L A AL L +SM
Sbjct: 1002 SEPDMPEYRVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANL-ESM 1060
Score = 47 (21.6 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 22/82 (26%), Positives = 34/82 (41%)
Query: 293 AKQKLHELCGKKKWPK------PSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKS 346
AK L + C + P P Y++ EGP++++ F AV G + E S
Sbjct: 985 AKSHLQQWCLAMRDPSSSEPDMPEYRVLGIEGPTNNRIFKIAVYYK---GKRLASAAE-S 1040
Query: 347 RVKDAENSAASMMLRALRESTY 368
V AE A + L L ++
Sbjct: 1041 NVHKAELRVAELALANLESMSF 1062
>UNIPROTKB|O01326 [details] [associations]
symbol:drsh-1 "Ribonuclease 3" species:6239 "Caenorhabditis
elegans" [GO:0005634 "nucleus" evidence=IC] [GO:0031053 "primary
miRNA processing" evidence=IMP] [GO:0019953 "sexual reproduction"
evidence=IMP] [GO:0004525 "ribonuclease III activity" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005634 GO:GO:0009792 GO:GO:0030154 GO:GO:0007052
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0007506 GO:GO:0000910
GO:GO:0003725 GO:GO:0016075 GO:GO:0019953 GO:GO:0006364
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
GO:GO:0031053 PANTHER:PTHR11207 GeneTree:ENSGT00690000102147
EMBL:Z81070 HOGENOM:HOG000154167 EMBL:AF160248 PIR:T21420
RefSeq:NP_001122460.2 RefSeq:NP_492599.1 ProteinModelPortal:O01326
SMR:O01326 STRING:O01326 PaxDb:O01326 EnsemblMetazoa:F26E4.10a
GeneID:172830 KEGG:cel:CELE_F26E4.10 UCSC:F26E4.10a CTD:172830
WormBase:F26E4.10a WormBase:F26E4.10b InParanoid:O01326 OMA:RFHKSLD
NextBio:877175 Uniprot:O01326
Length = 1086
Score = 124 (48.7 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 36/110 (32%), Positives = 59/110 (53%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY--TDSTS--YQRLEFIGDAALGLALSNYVFLAYPQL 94
+E + F N RLL +A T + D T QRLE++GD+ L L +S++++ +P
Sbjct: 836 LEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRFPYH 895
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDD-KVKEFAEAV 143
G +SLLR + +S + A V GF +FV + + K+K+ A+ V
Sbjct: 896 HEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAPYKTPELKLKDKADLV 945
Score = 56 (24.8 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 30/120 (25%), Positives = 51/120 (42%)
Query: 163 ADIVESIAAAIYVD--IDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL-LFKLCQKNG 219
AD+VE+ A+YVD I+ + ++F L+ + E+ + + +
Sbjct: 942 ADLVEAFIGALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRDPSS 1001
Query: 220 KQVDIKHWR--------KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSM 271
+ D+ +R NR +VY G +ASA+ A+L A AL L +SM
Sbjct: 1002 SEPDMPEYRVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANL-ESM 1060
Score = 47 (21.6 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 22/82 (26%), Positives = 34/82 (41%)
Query: 293 AKQKLHELCGKKKWPK------PSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKS 346
AK L + C + P P Y++ EGP++++ F AV G + E S
Sbjct: 985 AKSHLQQWCLAMRDPSSSEPDMPEYRVLGIEGPTNNRIFKIAVYYK---GKRLASAAE-S 1040
Query: 347 RVKDAENSAASMMLRALRESTY 368
V AE A + L L ++
Sbjct: 1041 NVHKAELRVAELALANLESMSF 1062
>UNIPROTKB|F1M2R2 [details] [associations]
symbol:F1M2R2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
IPI:IPI00951546 Ensembl:ENSRNOT00000066555 ArrayExpress:F1M2R2
Uniprot:F1M2R2
Length = 287
Score = 123 (48.4 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 60/246 (24%), Positives = 106/246 (43%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSS--YTDST--SYQRLEFIGDAALGLALS 84
SP ++ + E I F + RLL A T + + T QR+EF+GD+ + L +
Sbjct: 14 SPVLQKLTEF-EEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVAT 72
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKE--FAEA 142
Y+F+ +P G L+LLR++ ++ A+VA + G ++ A +DK K
Sbjct: 73 EYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY-----AITNDKTKRPVALRT 127
Query: 143 VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI-DFDLQKLWMIFRGLLEPI-VTLEE 200
+ D + ++ K L + + + + +F L + W + L+ +TL
Sbjct: 128 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRT 187
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
++P L+K Q G H R +VY G + + A++ AA
Sbjct: 188 EGKEPD--IPLYKTLQTVGPS----H---ARTYTVAVYFKGERIGCGKGPSIQQAEMGAA 238
Query: 261 REALEK 266
+ALEK
Sbjct: 239 MDALEK 244
>RGD|1307626 [details] [associations]
symbol:Drosha "drosha, ribonuclease type III" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0004521 "endoribonuclease activity" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010586 "miRNA metabolic process" evidence=ISO]
[GO:0031054 "pre-miRNA processing" evidence=ISO] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
RGD:1307626 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207
HOGENOM:HOG000122291 HOVERGEN:HBG023130 OrthoDB:EOG4VQ9NG
UniGene:Rn.41113 IPI:IPI00870720 EMBL:AY373464
ProteinModelPortal:Q67B98 STRING:Q67B98 PRIDE:Q67B98
InParanoid:Q67B98 ArrayExpress:Q67B98 Genevestigator:Q67B98
Uniprot:Q67B98
Length = 288
Score = 123 (48.4 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 60/246 (24%), Positives = 106/246 (43%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSS--YTDST--SYQRLEFIGDAALGLALS 84
SP ++ + E I F + RLL A T + + T QR+EF+GD+ + L +
Sbjct: 15 SPVLQKLTEF-EEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVAT 73
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKE--FAEA 142
Y+F+ +P G L+LLR++ ++ A+VA + G ++ A +DK K
Sbjct: 74 EYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY-----AITNDKTKRPVALRT 128
Query: 143 VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI-DFDLQKLWMIFRGLLEPI-VTLEE 200
+ D + ++ K L + + + + +F L + W + L+ +TL
Sbjct: 129 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRT 188
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
++P L+K Q G H R +VY G + + A++ AA
Sbjct: 189 EGKEPD--IPLYKTLQTVGPS----H---ARTYTVAVYFKGERIGCGKGPSIQQAEMGAA 239
Query: 261 REALEK 266
+ALEK
Sbjct: 240 MDALEK 245
>ZFIN|ZDB-GENE-070209-23 [details] [associations]
symbol:rnasen "ribonuclease type III, nuclear"
species:7955 "Danio rerio" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 ZFIN:ZDB-GENE-070209-23
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 OMA:SGKEKNY
EMBL:BX571950 IPI:IPI00499713 Ensembl:ENSDART00000089017
ArrayExpress:F1QKS5 Bgee:F1QKS5 Uniprot:F1QKS5
Length = 1289
Score = 127 (49.8 bits), Expect = 0.00017, P = 0.00017
Identities = 61/246 (24%), Positives = 107/246 (43%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSS--YTDST--SYQRLEFIGDAALGLALS 84
SP ++ + E+ I F + RLL A T + + T QR+EF+GD+ + L +
Sbjct: 1021 SPVLQKLTNF-EDAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVAT 1079
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKE--FAEA 142
Y+F+ +P G L+LLR++ ++ A+VA + G +F A +DK K
Sbjct: 1080 EYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF-----AITNDKTKRPVALRT 1134
Query: 143 VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI-DFDLQKLWMIFRGLLEPI-VTLEE 200
+ D + ++ K L + + + + +F L + W + L+ +TL
Sbjct: 1135 KTLADLLESFIAALYIDKDLEFVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRT 1194
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
++P L+K Q G H R +VY G + + A++ AA
Sbjct: 1195 EGKEPD--IPLYKTLQTVGPS----H---ARTYTVAVYFKGERIGCGKGPSIQQAEMGAA 1245
Query: 261 REALEK 266
+ALEK
Sbjct: 1246 MDALEK 1251
>UNIPROTKB|F1PJL5 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 EMBL:AAEX03003196
Ensembl:ENSCAFT00000030086 OMA:TSICAFD Uniprot:F1PJL5
Length = 627
Score = 123 (48.4 bits), Expect = 0.00019, P = 0.00019
Identities = 60/246 (24%), Positives = 106/246 (43%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSS--YTDST--SYQRLEFIGDAALGLALS 84
SP ++ + E I F + RLL A T + + T QR+EF+GD+ + L +
Sbjct: 354 SPVLQKLTEF-EEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVAT 412
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKE--FAEA 142
Y+F+ +P G L+LLR++ ++ A+VA + G ++ A +DK K
Sbjct: 413 EYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY-----AITNDKTKRPVALRT 467
Query: 143 VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI-DFDLQKLWMIFRGLLEPI-VTLEE 200
+ D + ++ K L + + + + +F L + W + L+ +TL
Sbjct: 468 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRT 527
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
++P L+K Q G H R +VY G + + A++ AA
Sbjct: 528 EGKEPD--IPLYKTLQTVGPS----H---ARTYTVAVYFKGERIGCGKGPSIQQAEMGAA 578
Query: 261 REALEK 266
+ALEK
Sbjct: 579 MDALEK 584
>UNIPROTKB|F1NQC9 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0010586
"miRNA metabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:AADN02007047
IPI:IPI00583351 Ensembl:ENSGALT00000021065 Uniprot:F1NQC9
Length = 1336
Score = 126 (49.4 bits), Expect = 0.00023, P = 0.00023
Identities = 61/246 (24%), Positives = 106/246 (43%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSS--YTDST--SYQRLEFIGDAALGLALS 84
SP ++ + E I F + RLL A T + + T QR+EF+GD+ + L +
Sbjct: 1063 SPVLQKLTEF-EEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVAT 1121
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKE--FAEA 142
Y+F+ +P G L+LLR++ ++ A+VA + G +F A +DK K
Sbjct: 1122 EYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF-----AITNDKTKRPVALRT 1176
Query: 143 VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI-DFDLQKLWMIFRGLLEPI-VTLEE 200
+ D + ++ K L + + + + +F L + W + L+ +TL
Sbjct: 1177 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRT 1236
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
++P L+K Q G H R +VY G + + A++ AA
Sbjct: 1237 EGKEPD--IPLYKTLQTVGPS----H---ARTYTVAVYFKGERIGCGKGPSIQQAEMGAA 1287
Query: 261 REALEK 266
+ALEK
Sbjct: 1288 MDALEK 1293
>UNIPROTKB|I3L6Y9 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
OMA:FLEYDQE GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:CU915626
Ensembl:ENSSSCT00000022914 Uniprot:I3L6Y9
Length = 1565
Score = 125 (49.1 bits), Expect = 0.00035, P = 0.00035
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1290 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1349
Query: 109 TEKLARVAVKHG 120
L R+ K G
Sbjct: 1350 NCNLYRLGKKKG 1361
>UNIPROTKB|F1LQY5 [details] [associations]
symbol:F1LQY5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0006396 GO:GO:0003725 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 IPI:IPI00870720
Ensembl:ENSRNOT00000018032 ArrayExpress:F1LQY5 Uniprot:F1LQY5
Length = 1018
Score = 123 (48.4 bits), Expect = 0.00035, P = 0.00035
Identities = 60/246 (24%), Positives = 106/246 (43%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSS--YTDST--SYQRLEFIGDAALGLALS 84
SP ++ + E I F + RLL A T + + T QR+EF+GD+ + L +
Sbjct: 745 SPVLQKLTEF-EEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVAT 803
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKE--FAEA 142
Y+F+ +P G L+LLR++ ++ A+VA + G ++ A +DK K
Sbjct: 804 EYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY-----AITNDKTKRPVALRT 858
Query: 143 VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI-DFDLQKLWMIFRGLLEPI-VTLEE 200
+ D + ++ K L + + + + +F L + W + L+ +TL
Sbjct: 859 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRT 918
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
++P L+K Q G H R +VY G + + A++ AA
Sbjct: 919 EGKEPD--IPLYKTLQTVGPS----H---ARTYTVAVYFKGERIGCGKGPSIQQAEMGAA 969
Query: 261 REALEK 266
+ALEK
Sbjct: 970 MDALEK 975
>UNIPROTKB|F1SP38 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:CU633306
EMBL:FP325179 EMBL:FP326694 Ensembl:ENSSSCT00000018300
ArrayExpress:F1SP38 Uniprot:F1SP38
Length = 1328
Score = 124 (48.7 bits), Expect = 0.00037, P = 0.00037
Identities = 60/246 (24%), Positives = 107/246 (43%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSS--YTDST--SYQRLEFIGDAALGLALS 84
SP ++ + E+ I F + RLL A T + + T QR+EF+GD+ + L +
Sbjct: 1055 SPVLQKLTEF-EDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVAT 1113
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKE--FAEA 142
Y+F+ +P G L+LLR++ ++ A+VA + G ++ A +DK K
Sbjct: 1114 EYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY-----AITNDKTKRPVALRT 1168
Query: 143 VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI-DFDLQKLWMIFRGLLEPI-VTLEE 200
+ D + ++ K L + + + + +F L + W + L+ +TL
Sbjct: 1169 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRT 1228
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
++P L+K Q G H R +VY G + + A++ AA
Sbjct: 1229 EGKEPD--IPLYKTLQTVGPS----H---ARTYTVAVYFKGERIGCGKGPSIQQAEMGAA 1279
Query: 261 REALEK 266
+ALEK
Sbjct: 1280 MDALEK 1285
>UNIPROTKB|E1BGY0 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:DAAA02050706
IPI:IPI00718255 Ensembl:ENSBTAT00000023346 Uniprot:E1BGY0
Length = 1368
Score = 124 (48.7 bits), Expect = 0.00039, P = 0.00039
Identities = 60/246 (24%), Positives = 107/246 (43%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSS--YTDST--SYQRLEFIGDAALGLALS 84
SP ++ + E+ I F + RLL A T + + T QR+EF+GD+ + L +
Sbjct: 1095 SPVLQKLTEF-EDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVAT 1153
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKE--FAEA 142
Y+F+ +P G L+LLR++ ++ A+VA + G ++ A +DK K
Sbjct: 1154 EYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY-----AITNDKTKRPVALRT 1208
Query: 143 VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI-DFDLQKLWMIFRGLLEPI-VTLEE 200
+ D + ++ K L + + + + +F L + W + L+ +TL
Sbjct: 1209 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRT 1268
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
++P L+K Q G H R +VY G + + A++ AA
Sbjct: 1269 EGKEPD--IPLYKTLQTVGPS----H---ARTYTVAVYFKGERIGCGKGPSIQQAEMGAA 1319
Query: 261 REALEK 266
+ALEK
Sbjct: 1320 MDALEK 1325
>UNIPROTKB|A7TR32 [details] [associations]
symbol:Kpol_455p11 "Putative uncharacterized protein"
species:436907 "Vanderwaltozyma polyspora DSM 70294" [GO:0042802
"identical protein binding" evidence=IPI] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0006396 GO:GO:0003725 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 OrthoDB:EOG4JT3FD EMBL:DS480469
RefSeq:XP_001643138.1 PDB:3RV0 PDB:3RV1 PDBsum:3RV0 PDBsum:3RV1
ProteinModelPortal:A7TR32 GeneID:5543348 KEGG:vpo:Kpol_455p11
Uniprot:A7TR32
Length = 558
Score = 109 (43.4 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 33/114 (28%), Positives = 57/114 (50%)
Query: 36 VFYVENIINYNFKNKRLLE-EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQL 94
V Y EN+ N F +K A + + S +RLEF+GD+ LG +S V+ +P
Sbjct: 110 VVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSA 169
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAA----LDDKV-KEFAEAV 143
+ G LS ++ + ++ L + K F K ++ + A + DK+ K +A+ V
Sbjct: 170 NEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGNIATPTRVVKDKMSKRYADCV 223
Score = 53 (23.7 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 19/63 (30%), Positives = 30/63 (47%)
Query: 205 PQPVTLLFKLCQKNGKQVDIKHWRKNRKNI-ASVYVDGS--FVASASSEQKEIAKLNAAR 261
P L+ L ++ D + + + N A+ + GS F+AS K+IA+ NAA
Sbjct: 481 PNAKQALYTLLSRSQVFPDYEMVQHSMDNFTANCIIKGSGIFLASGRGRSKKIAQQNAAS 540
Query: 262 EAL 264
AL
Sbjct: 541 AAL 543
>FB|FBgn0037716 [details] [associations]
symbol:CG8273 species:7227 "Drosophila melanogaster"
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
InterPro:IPR000467 InterPro:IPR001159 Pfam:PF00035 Pfam:PF01585
PROSITE:PS50137 PROSITE:PS50174 SMART:SM00358 SMART:SM00443
InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725
eggNOG:NOG84537 HSSP:Q91836 EMBL:BT001332 ProteinModelPortal:Q8IHA8
SMR:Q8IHA8 PaxDb:Q8IHA8 PRIDE:Q8IHA8 FlyBase:FBgn0037716
InParanoid:Q8IHA8 OrthoDB:EOG41G1KH ArrayExpress:Q8IHA8 Bgee:Q8IHA8
Uniprot:Q8IHA8
Length = 886
Score = 121 (47.7 bits), Expect = 0.00049, P = 0.00049
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 297 LHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAA 356
L+EL K KW P YK+ +D GP+H++ F+ +V+I +G F + K+A+ +AA
Sbjct: 817 LNELTSKNKWMPPQYKLRQDIGPAHNRSFLFSVEI---NGQTFTPDRGSNNKKEAKLNAA 873
Query: 357 SMMLRAL 363
++ LR+L
Sbjct: 874 ALCLRSL 880
>MGI|MGI:1261425 [details] [associations]
symbol:Drosha "drosha, ribonuclease type III" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004521 "endoribonuclease activity" evidence=IDA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0010468 "regulation
of gene expression" evidence=IMP] [GO:0010586 "miRNA metabolic
process" evidence=IMP] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 MGI:MGI:1261425 GO:GO:0005730 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0042254 GO:GO:0003725 GO:GO:0010586
GO:GO:0031054 GO:GO:0004521 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 KO:K03685
HSSP:O67082 CTD:29102 HOGENOM:HOG000122291 OMA:SGKEKNY
OrthoDB:EOG4VQ9NG ChiTaRS:DROSHA EMBL:AK144147 EMBL:AK148640
EMBL:BC088999 IPI:IPI00336345 RefSeq:NP_001123621.1
RefSeq:NP_081075.3 UniGene:Mm.293142 ProteinModelPortal:Q5HZJ0
SMR:Q5HZJ0 STRING:Q5HZJ0 PhosphoSite:Q5HZJ0 PRIDE:Q5HZJ0
Ensembl:ENSMUST00000090292 Ensembl:ENSMUST00000169061 GeneID:14000
KEGG:mmu:14000 UCSC:uc007via.2 InParanoid:Q5HZJ0 NextBio:284892
Bgee:Q5HZJ0 Genevestigator:Q5HZJ0 Uniprot:Q5HZJ0
Length = 1373
Score = 123 (48.4 bits), Expect = 0.00050, P = 0.00050
Identities = 60/246 (24%), Positives = 106/246 (43%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSS--YTDST--SYQRLEFIGDAALGLALS 84
SP ++ + E I F + RLL A T + + T QR+EF+GD+ + L +
Sbjct: 1100 SPVLQKLTEF-EEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVAT 1158
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKE--FAEA 142
Y+F+ +P G L+LLR++ ++ A+VA + G ++ A +DK K
Sbjct: 1159 EYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY-----AITNDKTKRPVALRT 1213
Query: 143 VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI-DFDLQKLWMIFRGLLEPI-VTLEE 200
+ D + ++ K L + + + + +F L + W + L+ +TL
Sbjct: 1214 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRT 1273
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
++P L+K Q G H R +VY G + + A++ AA
Sbjct: 1274 EGKEPD--IPLYKTLQTVGPS----H---ARTYTVAVYFKGERIGCGKGPSIQQAEMGAA 1324
Query: 261 REALEK 266
+ALEK
Sbjct: 1325 MDALEK 1330
>UNIPROTKB|E9PTR3 [details] [associations]
symbol:E9PTR3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 KO:K03685 CTD:29102 IPI:IPI00559397
RefSeq:NP_001101125.2 RefSeq:XP_003749268.1 UniGene:Rn.41113
Ensembl:ENSRNOT00000048026 GeneID:310159 KEGG:rno:310159
ArrayExpress:E9PTR3 Uniprot:E9PTR3
Length = 1373
Score = 123 (48.4 bits), Expect = 0.00050, P = 0.00050
Identities = 60/246 (24%), Positives = 106/246 (43%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSS--YTDST--SYQRLEFIGDAALGLALS 84
SP ++ + E I F + RLL A T + + T QR+EF+GD+ + L +
Sbjct: 1100 SPVLQKLTEF-EEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVAT 1158
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKE--FAEA 142
Y+F+ +P G L+LLR++ ++ A+VA + G ++ A +DK K
Sbjct: 1159 EYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY-----AITNDKTKRPVALRT 1213
Query: 143 VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI-DFDLQKLWMIFRGLLEPI-VTLEE 200
+ D + ++ K L + + + + +F L + W + L+ +TL
Sbjct: 1214 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRT 1273
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
++P L+K Q G H R +VY G + + A++ AA
Sbjct: 1274 EGKEPD--IPLYKTLQTVGPS----H---ARTYTVAVYFKGERIGCGKGPSIQQAEMGAA 1324
Query: 261 REALEK 266
+ALEK
Sbjct: 1325 MDALEK 1330
>UNIPROTKB|Q9NRR4 [details] [associations]
symbol:DROSHA "Ribonuclease 3" species:9606 "Homo sapiens"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0010586 "miRNA metabolic process" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0010467 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0042254
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
BRENDA:3.1.26.3 PANTHER:PTHR11207 KO:K03685 EMBL:AF189011
EMBL:AC008768 EMBL:AC022417 EMBL:AC106802 EMBL:AJ242976
EMBL:AK001121 EMBL:BC041162 EMBL:BC054003 EMBL:AF116910
IPI:IPI00219990 IPI:IPI00300956 IPI:IPI00942044 RefSeq:NP_037367.3
UniGene:Hs.97997 PDB:2KHX PDBsum:2KHX ProteinModelPortal:Q9NRR4
SMR:Q9NRR4 DIP:DIP-33300N IntAct:Q9NRR4 MINT:MINT-1184869
STRING:Q9NRR4 PhosphoSite:Q9NRR4 DMDM:20139357 PaxDb:Q9NRR4
PRIDE:Q9NRR4 Ensembl:ENST00000344624 Ensembl:ENST00000511367
GeneID:29102 KEGG:hsa:29102 UCSC:uc003jhg.2 CTD:29102
GeneCards:GC05M031401 H-InvDB:HIX0004780 HGNC:HGNC:17904 MIM:608828
neXtProt:NX_Q9NRR4 PharmGKB:PA142671060 HOGENOM:HOG000122291
HOVERGEN:HBG023130 InParanoid:Q9NRR4 OMA:SGKEKNY OrthoDB:EOG4VQ9NG
ChiTaRS:DROSHA EvolutionaryTrace:Q9NRR4 GenomeRNAi:29102
NextBio:52141 ArrayExpress:Q9NRR4 Bgee:Q9NRR4 CleanEx:HS_RNASEN
Genevestigator:Q9NRR4 GermOnline:ENSG00000113360 Uniprot:Q9NRR4
Length = 1374
Score = 123 (48.4 bits), Expect = 0.00050, P = 0.00050
Identities = 60/246 (24%), Positives = 106/246 (43%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSS--YTDST--SYQRLEFIGDAALGLALS 84
SP ++ + E I F + RLL A T + + T QR+EF+GD+ + L +
Sbjct: 1101 SPVLQKLTEF-EEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVAT 1159
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKE--FAEA 142
Y+F+ +P G L+LLR++ ++ A+VA + G ++ A +DK K
Sbjct: 1160 EYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY-----AITNDKTKRPVALRT 1214
Query: 143 VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI-DFDLQKLWMIFRGLLEPI-VTLEE 200
+ D + ++ K L + + + + +F L + W + L+ +TL
Sbjct: 1215 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRT 1274
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
++P L+K Q G H R +VY G + + A++ AA
Sbjct: 1275 EGKEPD--IPLYKTLQTVGPS----H---ARTYTVAVYFKGERIGCGKGPSIQQAEMGAA 1325
Query: 261 REALEK 266
+ALEK
Sbjct: 1326 MDALEK 1331
>DICTYBASE|DDB_G0268410 [details] [associations]
symbol:drnB "putative RNase III" species:44689
"Dictyostelium discoideum" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 dictyBase:DDB_G0268410 GenomeReviews:CM000150_GR
Gene3D:3.30.160.20 EMBL:AAFI02000003 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
RefSeq:XP_647462.2 ProteinModelPortal:Q55FS1
EnsemblProtists:DDB0231869 GeneID:8616269 KEGG:ddi:DDB_G0268410
OMA:NEYENEY ProtClustDB:CLSZ2431100 Uniprot:Q55FS1
Length = 1385
Score = 122 (48.0 bits), Expect = 0.00065, P = 0.00065
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 43 INYNFKNKRLLEEALT--HSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
I + + LLEEAL +S ++ S SYQRLE++GDA L +S++++ +P GQL+
Sbjct: 1222 IGVHISHSSLLEEALCFPYSFHSASKSYQRLEYVGDAVLDFFVSDFLYATFPLAQEGQLT 1281
Query: 101 LLRAANISTEKLARVAVK 118
R+ + L+ ++ K
Sbjct: 1282 DYRSRLVRNSNLSSISRK 1299
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.131 0.370 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 370 370 0.00086 117 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 64
No. of states in DFA: 605 (64 KB)
Total size of DFA: 224 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 34.18u 0.13s 34.31t Elapsed: 00:00:02
Total cpu time: 34.19u 0.13s 34.32t Elapsed: 00:00:02
Start: Mon May 20 14:57:28 2013 End: Mon May 20 14:57:30 2013