BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017515
(370 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255577153|ref|XP_002529460.1| ribonuclease III, putative [Ricinus communis]
gi|223531076|gb|EEF32926.1| ribonuclease III, putative [Ricinus communis]
Length = 342
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/341 (71%), Positives = 293/341 (85%), Gaps = 2/341 (0%)
Query: 31 EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLA 90
E ++ VE I+NY FKNK+L+EEALTHSSYT S +YQRLEFIGDAALGLALSN+VFLA
Sbjct: 2 EASSSISAVEKILNYTFKNKQLVEEALTHSSYTASPNYQRLEFIGDAALGLALSNHVFLA 61
Query: 91 YPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTA 150
YP LDPG LSLLRAANISTEKLARVAVKHG ++F+RH+A ALDDKVKEF++AV +E++ A
Sbjct: 62 YPDLDPGHLSLLRAANISTEKLARVAVKHGLFRFLRHNATALDDKVKEFSDAVLREEDEA 121
Query: 151 V-YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVT 209
V +GG++KAPKVLADIVES+AAA+YVD++FDLQ+LW+IFRGLLEPIVT E+LQQQPQP+T
Sbjct: 122 VAHGGTVKAPKVLADIVESVAAAVYVDVNFDLQRLWVIFRGLLEPIVTPEDLQQQPQPMT 181
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
+LF+LCQK GK+VDI HW+ KNIAS+YVDG FVAS SSEQKE AKLNAA+ AL+KL+
Sbjct: 182 MLFELCQKKGKEVDIVHWKSGTKNIASIYVDGGFVASGSSEQKETAKLNAAKGALQKLSH 241
Query: 270 SMPVNCDVCE-IFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSA 328
MP N E + I FEIE AK+KLHELCGKKKWPKP+Y IEK+ GPSH+KK++ +
Sbjct: 242 LMPSNLGHFEDVLKTIGGSFEIEGAKRKLHELCGKKKWPKPTYNIEKETGPSHEKKYVCS 301
Query: 329 VQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTYL 369
VQIAT DGVL++ GDEK RVK+A+NSAAS+M+RAL+ES YL
Sbjct: 302 VQIATVDGVLYMRGDEKMRVKEADNSAASLMIRALQESNYL 342
>gi|225460893|ref|XP_002278706.1| PREDICTED: ribonuclease 3-like protein 2-like [Vitis vinifera]
Length = 364
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 243/343 (70%), Positives = 285/343 (83%), Gaps = 1/343 (0%)
Query: 26 SLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSN 85
S PS ME +V VE IINY F+NK+LLEEALTHSSYTDS SYQRLEFIGDAALG ALSN
Sbjct: 22 SYPSKSMEASVEAVERIINYKFRNKKLLEEALTHSSYTDSASYQRLEFIGDAALGCALSN 81
Query: 86 YVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ 145
YVFLAYP LDPGQLSL+RAANISTEKLARVAV+ G Y++VRH+AAALDDKV+EFA AV +
Sbjct: 82 YVFLAYPSLDPGQLSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQE 141
Query: 146 EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQP 205
E ++ +YGGS+KAPK LADIVES+AAAIYVD +FDLQ LW+IFRGLLEPIVT E LQQQP
Sbjct: 142 EGDSVLYGGSVKAPKFLADIVESVAAAIYVDCNFDLQVLWVIFRGLLEPIVTHEALQQQP 201
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
QPVTLL++LCQK+GK VDIKHWRK KNIASVYV G F+AS SS++KEIAKLNAA+EAL+
Sbjct: 202 QPVTLLYELCQKDGKHVDIKHWRKGSKNIASVYVGGKFIASGSSDEKEIAKLNAAKEALQ 261
Query: 266 KLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKF 325
KL+ + + ++ + +I+ EI+ AKQKLHE C KKKWPKPSY+IEK+ GP+H+K F
Sbjct: 262 KLSSKLK-DTEMTQNNLEINGSCEIDGAKQKLHEFCSKKKWPKPSYRIEKEVGPAHEKGF 320
Query: 326 MSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTY 368
+ +V I T DGVL + GD K RVKDAENSAAS M+ L ES Y
Sbjct: 321 LCSVHIETVDGVLVMQGDTKPRVKDAENSAASFMICTLYESRY 363
>gi|297737474|emb|CBI26675.3| unnamed protein product [Vitis vinifera]
Length = 337
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 240/337 (71%), Positives = 282/337 (83%), Gaps = 1/337 (0%)
Query: 32 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAY 91
ME +V VE IINY F+NK+LLEEALTHSSYTDS SYQRLEFIGDAALG ALSNYVFLAY
Sbjct: 1 MEASVEAVERIINYKFRNKKLLEEALTHSSYTDSASYQRLEFIGDAALGCALSNYVFLAY 60
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV 151
P LDPGQLSL+RAANISTEKLARVAV+ G Y++VRH+AAALDDKV+EFA AV +E ++ +
Sbjct: 61 PSLDPGQLSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQEEGDSVL 120
Query: 152 YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLL 211
YGGS+KAPK LADIVES+AAAIYVD +FDLQ LW+IFRGLLEPIVT E LQQQPQPVTLL
Sbjct: 121 YGGSVKAPKFLADIVESVAAAIYVDCNFDLQVLWVIFRGLLEPIVTHEALQQQPQPVTLL 180
Query: 212 FKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSM 271
++LCQK+GK VDIKHWRK KNIASVYV G F+AS SS++KEIAKLNAA+EAL+KL+ +
Sbjct: 181 YELCQKDGKHVDIKHWRKGSKNIASVYVGGKFIASGSSDEKEIAKLNAAKEALQKLSSKL 240
Query: 272 PVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI 331
+ ++ + +I+ EI+ AKQKLHE C KKKWPKPSY+IEK+ GP+H+K F+ +V I
Sbjct: 241 K-DTEMTQNNLEINGSCEIDGAKQKLHEFCSKKKWPKPSYRIEKEVGPAHEKGFLCSVHI 299
Query: 332 ATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTY 368
T DGVL + GD K RVKDAENSAAS M+ L ES Y
Sbjct: 300 ETVDGVLVMQGDTKPRVKDAENSAASFMICTLYESRY 336
>gi|449459642|ref|XP_004147555.1| PREDICTED: ribonuclease 3-like protein 2-like [Cucumis sativus]
Length = 338
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 222/338 (65%), Positives = 271/338 (80%)
Query: 32 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAY 91
ME +V +E I++YNF NK LLEEALTH SY+ S SY+RLEF+GD+A+GLA++NY FLA
Sbjct: 1 MESSVIALERILSYNFNNKSLLEEALTHPSYSASASYERLEFVGDSAIGLAVTNYFFLAS 60
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV 151
P L G LSLLRAAN+STEKLARVAV HG Y +VR + A+DDKVKEF ++V+ E ++
Sbjct: 61 PHLHQGHLSLLRAANVSTEKLARVAVTHGLYNYVRRDSPAMDDKVKEFVDSVALEGSSVP 120
Query: 152 YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLL 211
YGG +KAPKVLADIVES+A AIYVD++FDLQKLW I RGLLEPI TLEELQ +PQPVT+L
Sbjct: 121 YGGMMKAPKVLADIVESVAGAIYVDVEFDLQKLWAIIRGLLEPIYTLEELQVEPQPVTVL 180
Query: 212 FKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSM 271
F++CQ+NGKQVDIKHW+ +IASV+VDG FVAS SS QKEIA+LNAAREAL KL+ SM
Sbjct: 181 FQVCQRNGKQVDIKHWKNGSNSIASVHVDGKFVASGSSMQKEIARLNAAREALIKLSDSM 240
Query: 272 PVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI 331
D IDE FEIE AKQKLH++C K+KW KP+Y +EKD GPSH++ F+ +V+I
Sbjct: 241 DTRIKTFVTIDGIDESFEIEGAKQKLHDVCCKRKWQKPNYSVEKDLGPSHERIFVCSVKI 300
Query: 332 ATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTYL 369
AT G +I GDEKSRVKDAENSAAS+M+RAL+E +L
Sbjct: 301 ATCYGTFYIVGDEKSRVKDAENSAASLMIRALQERKHL 338
>gi|449526603|ref|XP_004170303.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3-like protein 2-like
[Cucumis sativus]
Length = 338
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 218/338 (64%), Positives = 269/338 (79%)
Query: 32 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAY 91
ME +V +E I++YNF NK LLEEALTH SY+ S SY+RLEF+GD+A+GLA++NY FLA
Sbjct: 1 MESSVIALERILSYNFNNKSLLEEALTHXSYSASASYERLEFVGDSAIGLAITNYFFLAS 60
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV 151
P L G LSLLRAAN+STEKLARVAV HG Y +VR + A+D KVKEF ++V+ E ++
Sbjct: 61 PHLHQGHLSLLRAANVSTEKLARVAVTHGLYNYVRRDSPAMDVKVKEFVDSVALEGSSVH 120
Query: 152 YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLL 211
YG +KAPKVLADIVES+A A+YVD++FDLQKLW+I RGLLEPI TLEELQ +PQPVT+L
Sbjct: 121 YGRLMKAPKVLADIVESVAGAVYVDVNFDLQKLWVIIRGLLEPIYTLEELQVEPQPVTVL 180
Query: 212 FKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSM 271
F++ Q+NGKQVDIKHW+ +IASV+VDG FVAS SS QKEIA+LNAAREAL KL+ SM
Sbjct: 181 FQVGQRNGKQVDIKHWKNGSNSIASVHVDGKFVASGSSMQKEIARLNAAREALIKLSDSM 240
Query: 272 PVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI 331
D IDE FEIE AKQKLH++C K+KW KP+Y +EKD GPSH++ F+ +V+I
Sbjct: 241 DTELKHFVTIDGIDESFEIEGAKQKLHDVCCKRKWQKPNYSVEKDLGPSHERIFVCSVKI 300
Query: 332 ATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTYL 369
AT G +I GDEKSRVKDAENSAAS+M+RAL+E +L
Sbjct: 301 ATCYGTFYIVGDEKSRVKDAENSAASLMIRALQERKHL 338
>gi|356552945|ref|XP_003544820.1| PREDICTED: ribonuclease 3-like protein 2-like [Glycine max]
Length = 345
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/338 (63%), Positives = 263/338 (77%), Gaps = 8/338 (2%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
VENI+ Y F+NK+LLEEALTHSS+ D SY+RLEF+GD L LA+SNY+FLAYP LDPGQ
Sbjct: 9 VENILRYRFRNKKLLEEALTHSSFLDGVSYERLEFVGDPVLSLAISNYLFLAYPDLDPGQ 68
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAAN+STEKLARVAV+ G ++FVRHSA L DKV+ F +AV E N +GGS+KA
Sbjct: 69 LSALRAANVSTEKLARVAVRIGLHRFVRHSAPPLVDKVERFVDAVKLEINPVAHGGSVKA 128
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
PKVLAD+VES+AAAIYVD++FDLQ LW+I RG+LEPIVT + L++QPQPVT+L+++CQK
Sbjct: 129 PKVLADVVESVAAAIYVDVNFDLQTLWVIMRGVLEPIVTPDALEKQPQPVTMLYEMCQKK 188
Query: 219 GKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP------ 272
GKQVDIK R+ ++A V+VDG FVASASS QK+ AKL AA+ AL KLA +P
Sbjct: 189 GKQVDIKPSREGDLSVAKVFVDGEFVASASSSQKDHAKLEAAKIALGKLAHLVPSTDKKS 248
Query: 273 -VNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI 331
N + D+ + + +EA K KL ELC KKWP P Y IEKD GPSH+KKF+ AVQI
Sbjct: 249 ATNMKLNFAADE-NGTWVVEAPKNKLRELCAVKKWPIPEYIIEKDSGPSHEKKFVCAVQI 307
Query: 332 ATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTYL 369
T DG+L ++GDEKSRVKDAENSAAS+M+RAL++ YL
Sbjct: 308 PTADGILQMSGDEKSRVKDAENSAASLMIRALQQYNYL 345
>gi|357464753|ref|XP_003602658.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
gi|355491706|gb|AES72909.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
Length = 344
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 198/335 (59%), Positives = 263/335 (78%), Gaps = 2/335 (0%)
Query: 31 EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLA 90
+MED+V VE II Y F+NK LLEEALTHSSY +S SY+RLEFIGDA LG A+SN++FL
Sbjct: 4 KMEDSVAAVEKIIGYTFRNKNLLEEALTHSSYPESVSYERLEFIGDAVLGHAISNHLFLV 63
Query: 91 YPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTA 150
Y +D QLSLLR+AN+STEKLAR AV + ++++R +L + ++EFA AV QE A
Sbjct: 64 YTNVDQRQLSLLRSANVSTEKLARAAVSNCLHRYIRLKTHSLAEHIREFAAAVEQEKGRA 123
Query: 151 V--YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPV 208
+ YGG++KAPKVLAD+VES+AAA+YVD+DFDL+KLW++ RGLLEPIVTL +L+Q+PQPV
Sbjct: 124 IVLYGGAVKAPKVLADVVESVAAAVYVDLDFDLKKLWVVIRGLLEPIVTLNDLEQKPQPV 183
Query: 209 TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268
T+L+++C KNGK+VDI+H R K+ ASVYVDG A ASS+QK+IAKL+AA+ A++KL
Sbjct: 184 TMLYEICHKNGKKVDIRHSRNGDKSTASVYVDGELFAVASSDQKDIAKLDAAKSAVQKLE 243
Query: 269 QSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSA 328
+ +P+ + +D FEIE KQKL+ LCG+KKWP P Y IE+DEG +K F+++
Sbjct: 244 RVLPITTTTPDNCKGLDGTFEIEEPKQKLYALCGRKKWPTPVYSIERDEGTPQNKIFVTS 303
Query: 329 VQIATTDGVLFITGDEKSRVKDAENSAASMMLRAL 363
VQ+AT DG L + G+EKSRVKD++NSAAS+M+RAL
Sbjct: 304 VQVATPDGTLKMLGEEKSRVKDSQNSAASLMIRAL 338
>gi|388495198|gb|AFK35665.1| unknown [Medicago truncatula]
Length = 344
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/338 (58%), Positives = 264/338 (78%), Gaps = 2/338 (0%)
Query: 31 EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLA 90
+MED+V VE II Y F+NK LLEEALTHSSY +S SY+RLEFIGDA LG A+SN++FL
Sbjct: 4 KMEDSVAAVEKIIGYTFRNKNLLEEALTHSSYPESVSYERLEFIGDAVLGHAISNHLFLV 63
Query: 91 YPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTA 150
Y +D QLSLLR+AN+STEKLAR AV + ++++R +L + ++EFA AV QE A
Sbjct: 64 YTNVDQRQLSLLRSANVSTEKLARAAVSNCLHRYIRLKTHSLAEHIREFAAAVEQEKGRA 123
Query: 151 V--YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPV 208
+ YGG++KA KVLAD+VES+AAA+YVD+DFDL+KLW++ RGLLEPIVTL +L+Q+PQPV
Sbjct: 124 IVLYGGAVKASKVLADVVESVAAAVYVDLDFDLKKLWVVIRGLLEPIVTLNDLEQKPQPV 183
Query: 209 TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268
T+L+++C KNGK+VDI+H R K+ ASVYVDG A ASS+QK+IAKL+AA+ A++KL
Sbjct: 184 TMLYEICHKNGKKVDIRHSRNGDKSTASVYVDGELFAVASSDQKDIAKLDAAKSAVQKLE 243
Query: 269 QSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSA 328
+ +P+ + +D FEIE KQKL+ LCG+KKWP P Y IE+DEG +K F+++
Sbjct: 244 RVLPITTTTPDNCKGLDGTFEIEEPKQKLYALCGRKKWPTPVYSIERDEGTPQNKIFVTS 303
Query: 329 VQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRES 366
VQ+AT DG L + G+EKSRVKD++NSAAS+M+RAL +S
Sbjct: 304 VQVATPDGTLKMLGEEKSRVKDSQNSAASLMIRALLQS 341
>gi|297834980|ref|XP_002885372.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp.
lyrata]
gi|297331212|gb|EFH61631.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp.
lyrata]
Length = 391
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/347 (56%), Positives = 274/347 (78%), Gaps = 8/347 (2%)
Query: 26 SLP-SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALS 84
S+P +PEME ++ +E I+NY FKNK LL+EA+TH+S TD SY+RLEF+GD+A+GLA+S
Sbjct: 50 SVPVTPEME-SMEALEKILNYKFKNKSLLKEAITHTSCTDFPSYERLEFVGDSAIGLAIS 108
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS 144
NY++L YP L+P QLSLLRAAN+STEKLARV + HG Y+F+R +A +LD+KVKEF++AV
Sbjct: 109 NYLYLTYPSLEPHQLSLLRAANVSTEKLARVTLNHGLYQFLRRNAPSLDEKVKEFSDAVG 168
Query: 145 QEDNTAV-YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ED+ +V YGG +KAPKVLAD+ ES+A A+YVD++FDLQ+LW+IFRGLLEPIVTL++LQ+
Sbjct: 169 KEDDFSVAYGGLVKAPKVLADLFESVAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQK 228
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
QPQPV++LFKLC K+ K++DIK+W+ +IA +Y+D F+AS +E K+IA+L AA+EA
Sbjct: 229 QPQPVSMLFKLCHKHKKRIDIKNWKDGNISIADIYLDDEFLASGRAENKDIARLIAAKEA 288
Query: 264 LEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDK 323
L KL++ PV + D+ + E++ AK KL+E+C KKKWPKP Y IE+D H K
Sbjct: 289 LRKLSEVFPVEM----VIDEDSVEIELKHAKTKLNEICLKKKWPKPIYSIEEDRTSVHGK 344
Query: 324 KFMSAVQIAT-TDGVLFITGDEKSRVKDAENSAASMMLRALRESTYL 369
+F+ + +I T+ L++ GDE+S++K AE+S+A M+RALR+S YL
Sbjct: 345 RFVCSAKIKIPTEETLYMKGDEQSKIKKAESSSAYHMIRALRKSHYL 391
>gi|18402610|ref|NP_566661.1| RNAse THREE-like protein 2 [Arabidopsis thaliana]
gi|75274109|sp|Q9LTQ0.1|RTL2_ARATH RecName: Full=Ribonuclease 3-like protein 2; AltName:
Full=Ribonuclease III-like protein 2; Short=RNase
III-like protein 2; AltName: Full=Ribonuclease
three-like protein 2
gi|9294562|dbj|BAB02825.1| unnamed protein product [Arabidopsis thaliana]
gi|332642855|gb|AEE76376.1| RNAse THREE-like protein 2 [Arabidopsis thaliana]
Length = 391
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/347 (55%), Positives = 268/347 (77%), Gaps = 8/347 (2%)
Query: 26 SLP-SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALS 84
S+P S EME ++ VE I+NY F NK LL+EA+TH+S TD SY+RLEFIGD+A+GLA+S
Sbjct: 50 SVPVSSEME-SMEAVEKILNYKFSNKSLLKEAITHTSCTDFPSYERLEFIGDSAIGLAIS 108
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS 144
NY++L YP L+P LSLLRAAN+STEKLARV++ HG Y F+R +A +LD+KVKEF+EAV
Sbjct: 109 NYLYLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVG 168
Query: 145 QEDNTAV-YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ED+ +V YGG +KAPKVLAD+ ES+A A+YVD++FDLQ+LW+IFRGLLEPIVTL++LQ+
Sbjct: 169 KEDDLSVSYGGLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQK 228
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
QPQPV++LFKLC K+ K++DIK+W+ +IA +Y+D +AS +E K+IA+L AA+EA
Sbjct: 229 QPQPVSMLFKLCHKHKKRIDIKNWKDGNVSIAVIYLDDELLASGRAENKDIARLIAAKEA 288
Query: 264 LEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDK 323
L KL++ PV + D+ + ++ AK KL+E+C KKKWPKP Y +E+D K
Sbjct: 289 LRKLSEVFPVEM----VIDEDSVEIQLTHAKTKLNEICLKKKWPKPIYSVEEDRSSVQGK 344
Query: 324 KFMSAVQIATT-DGVLFITGDEKSRVKDAENSAASMMLRALRESTYL 369
+F+ + +I T + L++ GDE+S++K AE+S+A M+RALR+S YL
Sbjct: 345 RFVCSAKIKITEEKTLYMKGDEQSKIKKAESSSAYHMIRALRKSHYL 391
>gi|17511264|gb|AAK68755.2| Unknown protein [Arabidopsis thaliana]
gi|20148705|gb|AAM10243.1| unknown protein [Arabidopsis thaliana]
Length = 391
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/347 (55%), Positives = 268/347 (77%), Gaps = 8/347 (2%)
Query: 26 SLP-SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALS 84
S+P S EME ++ VE I+NY F NK LL+EA+TH+S TD SY+RLEFIGD+A+GLA+S
Sbjct: 50 SVPVSSEME-SMEAVEKILNYKFSNKSLLKEAVTHTSCTDFPSYERLEFIGDSAIGLAIS 108
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS 144
NY++L YP L+P LSLLRAAN+STEKLARV++ HG Y F+R +A +LD+KVKEF+EAV
Sbjct: 109 NYLYLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVG 168
Query: 145 QEDNTAV-YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ED+ +V YGG +KAPKVLAD+ ES+A A+YVD++FDLQ+LW+IFRGLLEPIVTL++LQ+
Sbjct: 169 KEDDLSVSYGGLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQK 228
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
QPQPV++LFKLC K+ K++DIK+W+ +IA +Y+D +AS +E K+IA+L AA+EA
Sbjct: 229 QPQPVSMLFKLCHKHKKRIDIKNWKDGNVSIAVIYLDDELLASGRAENKDIARLIAAKEA 288
Query: 264 LEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDK 323
L KL++ PV + D+ + ++ AK KL+E+C KKKWPKP Y +E+D K
Sbjct: 289 LRKLSEVFPVEM----VIDEDSVEIQLTHAKTKLNEICLKKKWPKPIYSVEEDRSSVQGK 344
Query: 324 KFMSAVQIATT-DGVLFITGDEKSRVKDAENSAASMMLRALRESTYL 369
+F+ + +I T + L++ GDE+S++K AE+S+A M+RALR+S YL
Sbjct: 345 RFVCSAKIKITEEKTLYMKGDEQSKIKKAESSSAYHMIRALRKSHYL 391
>gi|449526605|ref|XP_004170304.1| PREDICTED: ribonuclease 3-like protein 2-like [Cucumis sativus]
Length = 339
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/331 (59%), Positives = 243/331 (73%), Gaps = 1/331 (0%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E I++Y FKNK+LLEEALTHSSY +S SY RLEFIGD+A+GLA+S Y F YP L+ GQ
Sbjct: 10 IERILSYKFKNKKLLEEALTHSSYLNSPSYDRLEFIGDSAIGLAISTYFFPLYPDLNQGQ 69
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
L+LLRAAN+STEKLARVAV H Y +VR +A LDD V+EFA+AV+ EDN+ YGG +KA
Sbjct: 70 LTLLRAANVSTEKLARVAVLHRLYSYVRRNADDLDDNVREFADAVALEDNSIPYGGLVKA 129
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
PKVLADIVES+A AIYVD++FDLQKLW I + L+PI T E+L+ PQPVTLLF+ CQK
Sbjct: 130 PKVLADIVESVAGAIYVDVEFDLQKLWAIIKDFLKPIYTPEDLEADPQPVTLLFEDCQKK 189
Query: 219 GKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVC 278
GKQV I++ K +A VYVD VAS SS+QK IA+LNAAREAL L+ S
Sbjct: 190 GKQVHIENQEKGSTYVAKVYVDRRLVASGSSKQKPIARLNAAREALIILSDSTDTKIKRV 249
Query: 279 EIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVL 338
D ID FEIE AKQKLH+ C +KKW PSY E G H ++F+ V+I+T +
Sbjct: 250 VTIDGIDGSFEIEGAKQKLHDFCCRKKWQSPSYSKEV-LGHPHGRRFVCCVKISTFNDTH 308
Query: 339 FITGDEKSRVKDAENSAASMMLRALRESTYL 369
I GDEKSRVK+AENSAAS+M+R L++ YL
Sbjct: 309 SIIGDEKSRVKEAENSAASLMIRDLQKRKYL 339
>gi|449459586|ref|XP_004147527.1| PREDICTED: ribonuclease 3-like protein 2-like [Cucumis sativus]
Length = 353
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/331 (59%), Positives = 243/331 (73%), Gaps = 1/331 (0%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E I++Y FKNK+LLEEALTHSSY +S SY RLEFIGD+A+GLA+S Y F YP L+ GQ
Sbjct: 24 IERILSYKFKNKKLLEEALTHSSYLNSPSYDRLEFIGDSAIGLAISTYFFPLYPDLNQGQ 83
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
L+LLRAAN+STEKLARVAV H Y +VR +A LDD V+EFA+AV+ EDN+ YGG +KA
Sbjct: 84 LTLLRAANVSTEKLARVAVLHRLYSYVRRNADDLDDNVREFADAVALEDNSIPYGGLVKA 143
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
PKVLADIVES+A AIYVD++FDLQKLW I + L+PI T E+L+ PQPVTLLF+ CQK
Sbjct: 144 PKVLADIVESVAGAIYVDVEFDLQKLWAIIKDFLKPIYTPEDLKADPQPVTLLFEDCQKK 203
Query: 219 GKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVC 278
GKQV I++ K +A VYVD VAS SS+QK IA+LNAAREAL L+ S
Sbjct: 204 GKQVHIENQEKGSTYVAKVYVDRRLVASGSSKQKPIARLNAAREALIILSDSTDTKIKRV 263
Query: 279 EIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVL 338
D ID FEIE AKQKLH+ C +KKW PSY E G H ++F+ V+I+T +
Sbjct: 264 VTIDGIDGSFEIEGAKQKLHDFCCRKKWQSPSYSKEV-LGHPHGRRFVCCVKISTFNDTH 322
Query: 339 FITGDEKSRVKDAENSAASMMLRALRESTYL 369
I GDEKSRVK+AENSAAS+M+R L++ YL
Sbjct: 323 SIIGDEKSRVKEAENSAASLMIRDLQKRKYL 353
>gi|224116530|ref|XP_002317324.1| predicted protein [Populus trichocarpa]
gi|222860389|gb|EEE97936.1| predicted protein [Populus trichocarpa]
Length = 217
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 171/217 (78%), Positives = 194/217 (89%), Gaps = 2/217 (0%)
Query: 32 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAY 91
ME +VF VE I+NY FKNKR LEEALTHSSYTDS SYQR+EF+GDAALGLALSNYV+LAY
Sbjct: 1 MEASVFAVEKILNYKFKNKRHLEEALTHSSYTDSASYQRMEFLGDAALGLALSNYVYLAY 60
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE--DNT 149
PQLDPG LSLLRAANISTEKLARVA+KHG Y+FVRH+A ALDDKVKEF++AVS E D+
Sbjct: 61 PQLDPGHLSLLRAANISTEKLARVAIKHGLYRFVRHNATALDDKVKEFSDAVSGEDDDDA 120
Query: 150 AVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVT 209
VYGGSIKAPK+LADIVES+AAA+YVD+DFDLQ W+IFRG+LEPIVTLE+LQQQPQPVT
Sbjct: 121 LVYGGSIKAPKILADIVESVAAAVYVDVDFDLQTFWVIFRGILEPIVTLEDLQQQPQPVT 180
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVAS 246
+LF+ CQK GK VDIKHW+ K+IASVYVDG F+AS
Sbjct: 181 MLFERCQKQGKNVDIKHWKNEAKSIASVYVDGQFIAS 217
>gi|358348326|ref|XP_003638198.1| Endoribonuclease Dicer-like protein, partial [Medicago truncatula]
gi|355504133|gb|AES85336.1| Endoribonuclease Dicer-like protein, partial [Medicago truncatula]
Length = 472
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 168/286 (58%), Positives = 221/286 (77%), Gaps = 2/286 (0%)
Query: 31 EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLA 90
+MED+V VE II Y F+NK LLEEALTHSSY +S SY+RLEFIGDA LG A+SN++FL
Sbjct: 109 KMEDSVAAVEKIIGYTFRNKNLLEEALTHSSYPESVSYERLEFIGDAVLGHAISNHLFLV 168
Query: 91 YPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTA 150
Y +D QLSLLR+AN+STEKLAR AV + ++++R +L + ++EFA AV QE A
Sbjct: 169 YTNVDQRQLSLLRSANVSTEKLARAAVSNCLHRYIRLKTHSLAEHIREFAAAVEQEKGRA 228
Query: 151 V--YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPV 208
+ YGG++KAPKVLAD+VES+AAA+YVD+DFDL+KLW++ RGLLEPIVTL +L+Q+PQPV
Sbjct: 229 IVLYGGAVKAPKVLADVVESVAAAVYVDLDFDLKKLWVVIRGLLEPIVTLNDLEQKPQPV 288
Query: 209 TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268
T+L+++C KNGK+VDI+H R K+ ASVYVDG A ASS+QK+IAKL+AA+ A++KL
Sbjct: 289 TMLYEICHKNGKKVDIRHSRNGDKSTASVYVDGELFAVASSDQKDIAKLDAAKSAVQKLE 348
Query: 269 QSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIE 314
+ +P+ + +D FEIE KQKL+ LCG+KKWP P Y E
Sbjct: 349 RVLPITTTTPDNCKGLDGTFEIEEPKQKLYALCGRKKWPTPVYSGE 394
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 45/55 (81%)
Query: 313 IEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALREST 367
IE+DEG +K F+++VQ+AT DG L + G+EKSRVKD++NSAAS+M+RAL + T
Sbjct: 49 IERDEGTPQNKIFVTSVQVATPDGTLKMLGEEKSRVKDSQNSAASLMIRALLQET 103
>gi|226510363|ref|NP_001140816.1| uncharacterized protein LOC100272891 [Zea mays]
gi|194701228|gb|ACF84698.1| unknown [Zea mays]
gi|413948833|gb|AFW81482.1| hypothetical protein ZEAMMB73_371069 [Zea mays]
Length = 376
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 181/340 (53%), Positives = 228/340 (67%), Gaps = 15/340 (4%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTDST-SYQRLEFIGDAALGLALSNYVFLAYP 92
+A VE ++ Y F ++ LLEEALTH S++D SYQRLEF+GDAALGLA SN+++L P
Sbjct: 39 EAAARVERLLRYQFCDRALLEEALTHQSFSDGALSYQRLEFVGDAALGLAFSNFLYLTNP 98
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE----DN 148
L PG LS LRAANISTEKLARVAV+H Y +R LD V +F E+V QE
Sbjct: 99 TLGPGALSTLRAANISTEKLARVAVRHDLYPLLRRKCPRLDLLVGQFIESVKQELMHDLA 158
Query: 149 TAVYGGS-IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP 207
TA YGGS +KAPKVLADIVE+IAAA+YVD FDL+KLW + R L EPI+T E + + QP
Sbjct: 159 TAPYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDE--QP 216
Query: 208 VTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
VT L +LCQK+GK K W+K+ + +V+V G V SSEQK IAKLNAAR+AL KL
Sbjct: 217 VTTLHELCQKHGKVAQFKTWQKDGMIVVNVFVGGEMVGLGSSEQKVIAKLNAARDALGKL 276
Query: 268 ----AQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDK 323
Q + +NC + DDI E+ KQKL E C +K WPKP +K+EK+ GP+H++
Sbjct: 277 IGGAKQQVLINCAANGLVDDIA---ELRECKQKLIEQCIRKHWPKPIFKLEKEGGPAHER 333
Query: 324 KFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRAL 363
F+ +VQ+ T G G+ SRVKDAENSAA M+ L
Sbjct: 334 NFVCSVQVDTQTGTFVTIGESMSRVKDAENSAAHKMVELL 373
>gi|242090101|ref|XP_002440883.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor]
gi|241946168|gb|EES19313.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor]
Length = 377
Score = 333 bits (855), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 181/347 (52%), Positives = 228/347 (65%), Gaps = 11/347 (3%)
Query: 26 SLPS--PEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDST-SYQRLEFIGDAALGLA 82
SLP + +A VE ++ Y F ++ LLEEALTH S++D SYQRLEF+GDAALGLA
Sbjct: 30 SLPGFVADRAEAAVRVERLLRYQFCDRALLEEALTHQSFSDGAFSYQRLEFVGDAALGLA 89
Query: 83 LSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEA 142
SN+++L P L PG LS LRAANISTEKLARVAV+H Y +R A LD V +F E+
Sbjct: 90 FSNFLYLTNPTLGPGALSTLRAANISTEKLARVAVRHDLYPLLRRKCARLDLLVGQFIES 149
Query: 143 VSQED----NTAVYGGS-IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT 197
V QE TA YGGS +KAPKVLADIVE+IAAA+YVD FDL+KLW + R L EP++T
Sbjct: 150 VKQEVMHDLATAPYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPVIT 209
Query: 198 LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKL 257
E + + QPVT L +LCQK+GK + W+K + +V+V G V SSEQK IAKL
Sbjct: 210 AETVDE--QPVTTLHELCQKHGKVAQFETWQKGGMTMVNVFVGGEMVGLGSSEQKVIAKL 267
Query: 258 NAAREALEKLAQSMPVNCDVCEIFDD-IDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKD 316
NAAR+AL KL + I + +DE E+ KQKL E C K WPKP +K+EK+
Sbjct: 268 NAARDALGKLIGGAKQQVLINGIANGLVDEIVELRECKQKLTEQCIGKHWPKPIFKLEKE 327
Query: 317 EGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRAL 363
GP+H++ F+ +VQ+ T G GD SRVKDAENSAA M+ L
Sbjct: 328 GGPAHERNFVCSVQVDTKTGTFVTIGDPMSRVKDAENSAAQKMVELL 374
>gi|357129531|ref|XP_003566415.1| PREDICTED: ribonuclease 3-like protein 2-like [Brachypodium
distachyon]
Length = 366
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 174/339 (51%), Positives = 222/339 (65%), Gaps = 13/339 (3%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTD-STSYQRLEFIGDAALGLALSNYVFLAYP 92
+A VE ++ Y F ++ LLEEALTH S+ D S SYQRLEF+GDAALG A SN+++L P
Sbjct: 29 EAAARVERLLCYQFHDRGLLEEALTHQSFGDGSVSYQRLEFVGDAALGNAFSNFLYLTNP 88
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE----DN 148
+ PG LS LR+ANISTEKLARVAV+H Y +R + LD V +F E+V QE
Sbjct: 89 TIGPGALSTLRSANISTEKLARVAVRHDLYPLLRRACPRLDLLVGQFIESVKQELEDDLG 148
Query: 149 TAVYGGS-IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP 207
A YGGS +KAPKVLADIVE+IAAA+YVD FDL+KLW + R L EPI+T E + + QP
Sbjct: 149 AAPYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDE--QP 206
Query: 208 VTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
V+ L +LCQK+GK W+K +A+V+V G V SSEQ+ IAKLNAAR AL L
Sbjct: 207 VSTLHELCQKHGKIPQFNIWQKGGTTVANVFVSGELVGMGSSEQRTIAKLNAARNALGNL 266
Query: 268 ---AQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKK 324
A+ + V I E E+ KQKL+E C +K WPKP +K+EK++GP+H++K
Sbjct: 267 LGGAKQQVLTTGVGHI--SRVEVGELRECKQKLNEQCSRKHWPKPIFKLEKEDGPAHERK 324
Query: 325 FMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRAL 363
F +VQ+ T G GD S+VKDAENS A ML L
Sbjct: 325 FTYSVQVETDGGTFVTIGDPMSKVKDAENSGAQKMLEVL 363
>gi|326533632|dbj|BAK05347.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 381
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 230/352 (65%), Gaps = 16/352 (4%)
Query: 26 SLPSP----EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDA 77
+LP P + +A VE ++ Y F+++ LL+EALTH S++ + SYQRLEF+GDA
Sbjct: 29 TLPPPGFVADRAEAAARVERLLQYRFRDRSLLDEALTHQSFSGGAGGAASYQRLEFVGDA 88
Query: 78 ALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVK 137
ALGLA SN+++L P + PG LS LRAANISTEKLARVAV+H Y +R + LD V
Sbjct: 89 ALGLAFSNFLYLTNPTVGPGALSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVG 148
Query: 138 EFAEAVSQ--EDNTAV--YGGSI-KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
+F E+V Q ED+ + YGGS+ KAPKVLADIVE+IAAA+YVD F++++LW + R L
Sbjct: 149 QFIESVKQELEDDLGITPYGGSVFKAPKVLADIVEAIAAAVYVDCKFNIEELWKVTRFLF 208
Query: 193 EPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQK 252
EPIVT E + + QPV+ L +LCQK+GK + K W+K + +V+V G V + SSEQ
Sbjct: 209 EPIVTAETIDE--QPVSTLHELCQKHGKDIKFKSWQKGGTTVVNVFVGGVLVGTGSSEQM 266
Query: 253 EIAKLNAAREALEKLAQSMPVNCDVCEIFDDID-EKFEIEAAKQKLHELCGKKKWPKPSY 311
IAKLNA R+AL KL + + E E+ K+KL + C +K WPKP +
Sbjct: 267 GIAKLNATRDALSKLHGGGNQQVLTTGVGHGLGVEVGELRECKKKLIDQCNRKLWPKPIF 326
Query: 312 KIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRAL 363
K+EK++GP+HD+ F+ +VQ+ T G+ GD SRVKDAENS A ML L
Sbjct: 327 KLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGAQKMLEHL 378
>gi|326497771|dbj|BAK05975.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 379
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 170/352 (48%), Positives = 230/352 (65%), Gaps = 16/352 (4%)
Query: 26 SLPSP----EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDA 77
+LP P + +A VE ++ Y F+++ LL+EALTH S++ + SYQRLEF+GDA
Sbjct: 27 TLPPPGFVADRAEAAARVERLLQYRFRDRSLLDEALTHQSFSGGAGGAASYQRLEFVGDA 86
Query: 78 ALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVK 137
ALGLA SN+++L P + PG LS LRAANISTEKLARVAV+H Y +R + LD V
Sbjct: 87 ALGLAFSNFLYLTNPTVGPGALSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVG 146
Query: 138 EFAEAVSQ--EDNTAV--YGGSI-KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
+F E+V Q ED+ + YGGS+ KAPKVLADIVE+IAAA+YVD F++++LW + R L
Sbjct: 147 QFIESVKQELEDDLGITPYGGSVFKAPKVLADIVEAIAAAVYVDCKFNIEELWKVTRFLF 206
Query: 193 EPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQK 252
EPIVT E + + QPV+ L +LCQK+GK + K W+K + +V+V G V + SSEQ
Sbjct: 207 EPIVTAETIDE--QPVSTLHELCQKHGKDIKFKSWQKGGTTVVNVFVGGVLVGTGSSEQM 264
Query: 253 EIAKLNAAREALEKLAQSMPVNCDVCEIFDDID-EKFEIEAAKQKLHELCGKKKWPKPSY 311
IAKLNA R+AL KL + + E E+ K+KL + C +K WPKP +
Sbjct: 265 GIAKLNATRDALSKLHGGGNQQVLTTGVGHGLGVEVGELRECKKKLIDQCNRKLWPKPIF 324
Query: 312 KIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRAL 363
K+EK++GP+HD+ F+ +VQ+ T G+ GD SRVKDAENS A ML L
Sbjct: 325 KLEKEDGPAHDRTFVYSVQVETQGGIWLTLGDRMSRVKDAENSGAQKMLEHL 376
>gi|357118476|ref|XP_003560980.1| PREDICTED: ribonuclease 3-like protein 2-like [Brachypodium
distachyon]
Length = 360
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 156/330 (47%), Positives = 217/330 (65%), Gaps = 9/330 (2%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTD-STSYQRLEFIGDAALGLALSNYVFLAYP 92
+A VE ++ Y F ++ LLE ALTH S++ + SYQRLEF+GDAAL LA S++++ A P
Sbjct: 21 EAAARVERLLQYRFHDRALLELALTHQSFSGGAASYQRLEFLGDAALDLAFSDFLYRANP 80
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE----DN 148
L PG+L+ LRAANISTEKLARVAV+H Y +R + LD V +F E V QE +
Sbjct: 81 TLGPGELTTLRAANISTEKLARVAVRHDLYPLLRRACPPLDLLVGQFIELVKQELEDDFS 140
Query: 149 TAVYGGS-IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP 207
TA YGG +KAPKVLADIVE+IAAA+Y+D D++K W + R L EP++T+E + + QP
Sbjct: 141 TAPYGGCVVKAPKVLADIVEAIAAAVYMDCKSDIEKFWKVTRRLFEPLITVETMHE--QP 198
Query: 208 VTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+++L +LCQK+G K +K + ++V G+ V SSEQ+ IAKLNA+R+A+ KL
Sbjct: 199 MSMLNELCQKHGMVPQFKESKKGEMTVIKIFVGGALVGMGSSEQRAIAKLNASRDAVSKL 258
Query: 268 AQSMPVNCDVCEIFDDIDEKFE-IEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFM 326
+ + + E + KQKL+E C KK WPKP +K+EK++GP+HD+KFM
Sbjct: 259 LGDPKQQVLTTGVGPGLVVEVEDLRECKQKLNEQCSKKHWPKPIFKLEKEDGPAHDRKFM 318
Query: 327 SAVQIATTDGVLFITGDEKSRVKDAENSAA 356
+V++ T +G F GD SRVK AENS
Sbjct: 319 YSVEVETQNGTYFARGDPMSRVKYAENSGG 348
>gi|251765118|sp|Q6ATG6.2|RTL2_ORYSJ RecName: Full=Ribonuclease 3-like protein 2; AltName:
Full=Ribonuclease III-like protein 2; Short=RNase
III-like protein 2
Length = 317
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 154/296 (52%), Positives = 194/296 (65%), Gaps = 12/296 (4%)
Query: 27 LPSP----EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD-STSYQRLEFIGDAALGL 81
LP P + +A VE ++ Y F++ RLLEEALTH S+ D + SYQRLEF+GD+ALGL
Sbjct: 24 LPPPGFVADRAEAAARVERLLRYQFRDGRLLEEALTHQSFADDAVSYQRLEFVGDSALGL 83
Query: 82 ALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE 141
A SN+++L P L PG LS LRAANISTEKLARVAV+H Y +R + LD V +F E
Sbjct: 84 AFSNFLYLTNPTLGPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIE 143
Query: 142 AVSQED----NTAVYGGS-IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV 196
V QE +T YGGS +KAPKVLADIVE+IAAA+YVD FDL+KLW + R L EPI+
Sbjct: 144 TVKQEPEDDLSTVPYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPII 203
Query: 197 TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK 256
T E + + QPVT+L +LCQK+GK K W+K + +V+V G V SSEQK IAK
Sbjct: 204 TAETIDE--QPVTMLHELCQKHGKMAQFKTWQKGGMTVVNVFVAGELVGIGSSEQKVIAK 261
Query: 257 LNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYK 312
LNAAR+A KLA + DE E+ KQKL+E C ++ WPKP +K
Sbjct: 262 LNAARDATRKLAGAKKQVLTTGVGNGLGDEIGELRECKQKLNEQCSRQNWPKPIFK 317
>gi|218196456|gb|EEC78883.1| hypothetical protein OsI_19246 [Oryza sativa Indica Group]
gi|222630918|gb|EEE63050.1| hypothetical protein OsJ_17858 [Oryza sativa Japonica Group]
Length = 350
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 154/329 (46%), Positives = 195/329 (59%), Gaps = 45/329 (13%)
Query: 27 LPSP----EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD-STSYQRLEFIGDAALGL 81
LP P + +A VE ++ Y F++ RLLEEALTH S+ D + SYQRLEF+GD+ALGL
Sbjct: 24 LPPPGFVADRAEAAARVERLLRYQFRDGRLLEEALTHQSFADDAVSYQRLEFVGDSALGL 83
Query: 82 ALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE 141
A SN+++L P L PG LS LRAANISTEKLARVAV+H Y +R + LD V +F E
Sbjct: 84 AFSNFLYLTNPTLGPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIE 143
Query: 142 AVSQED----NTAVYGGS-IKAPKVLADIVESIAAAIYVDIDFDLQKLW----------- 185
V QE +T YGGS +KAPKVLADIVE+IAAA+YVD FDL+KLW
Sbjct: 144 TVKQEPEDDLSTVPYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKRLTWLHGLQE 203
Query: 186 ----------------------MIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVD 223
++ R L EPI+T E + + QPVT+L +LCQK+GK
Sbjct: 204 IRWTVNTNNIKDWINNFIYGKRLVTRWLFEPIITAETIDE--QPVTMLHELCQKHGKMAQ 261
Query: 224 IKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDD 283
K W+K + +V+V G V SSEQK IAKLNAAR+A KLA +
Sbjct: 262 FKTWQKGGMTVVNVFVAGELVGIGSSEQKVIAKLNAARDATRKLAGAKKQVLTTGVGNGL 321
Query: 284 IDEKFEIEAAKQKLHELCGKKKWPKPSYK 312
DE E+ KQKL+E C ++ WPKP +K
Sbjct: 322 GDEIGELRECKQKLNEQCSRQNWPKPIFK 350
>gi|115462923|ref|NP_001055061.1| Os05g0271300 [Oryza sativa Japonica Group]
gi|50878449|gb|AAT85223.1| hypothetical protein [Oryza sativa Japonica Group]
gi|55908895|gb|AAV67838.1| unknown protein [Oryza sativa Japonica Group]
gi|113578612|dbj|BAF16975.1| Os05g0271300 [Oryza sativa Japonica Group]
Length = 344
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 154/329 (46%), Positives = 195/329 (59%), Gaps = 45/329 (13%)
Query: 27 LPSP----EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD-STSYQRLEFIGDAALGL 81
LP P + +A VE ++ Y F++ RLLEEALTH S+ D + SYQRLEF+GD+ALGL
Sbjct: 18 LPPPGFVADRAEAAARVERLLRYQFRDGRLLEEALTHQSFADDAVSYQRLEFVGDSALGL 77
Query: 82 ALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE 141
A SN+++L P L PG LS LRAANISTEKLARVAV+H Y +R + LD V +F E
Sbjct: 78 AFSNFLYLTNPTLGPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIE 137
Query: 142 AVSQED----NTAVYGGS-IKAPKVLADIVESIAAAIYVDIDFDLQKLW----------- 185
V QE +T YGGS +KAPKVLADIVE+IAAA+YVD FDL+KLW
Sbjct: 138 TVKQEPEDDLSTVPYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKRLTWLHGLQE 197
Query: 186 ----------------------MIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVD 223
++ R L EPI+T E + + QPVT+L +LCQK+GK
Sbjct: 198 IRWTVNTNNIKDWINNFIYGKRLVTRWLFEPIITAETIDE--QPVTMLHELCQKHGKMAQ 255
Query: 224 IKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDD 283
K W+K + +V+V G V SSEQK IAKLNAAR+A KLA +
Sbjct: 256 FKTWQKGGMTVVNVFVAGELVGIGSSEQKVIAKLNAARDATRKLAGAKKQVLTTGVGNGL 315
Query: 284 IDEKFEIEAAKQKLHELCGKKKWPKPSYK 312
DE E+ KQKL+E C ++ WPKP +K
Sbjct: 316 GDEIGELRECKQKLNEQCSRQNWPKPIFK 344
>gi|297836192|ref|XP_002885978.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297331818|gb|EFH62237.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 140/357 (39%), Positives = 222/357 (62%), Gaps = 22/357 (6%)
Query: 18 LLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDA 77
L E L SL S D V VE I+NY+F NK LL EALTH+S ++ +QRL F+G A
Sbjct: 355 LPHERSLESLSSEIDSDPVKAVEKILNYSFTNKNLLREALTHNS-SNLLPFQRLMFVGKA 413
Query: 78 ALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVK 137
+ LA +N+++L YP+L P +L++L+ AN ++ ARVAVK G Y+F++ + ++
Sbjct: 414 GISLAFANHMYLTYPKLGPKELTMLQNANTCNDRYARVAVKRGIYQFLKCNVRTSKRQII 473
Query: 138 EFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT 197
EF + + +ED+ + S+KAPK+L D+VES+A A+Y+D++ D+++LW I RGL EPI T
Sbjct: 474 EFIKMLGKEDDPDPFR-SVKAPKILTDLVESVAGAVYIDVNRDVKRLWEILRGLFEPIYT 532
Query: 198 LEELQQQPQPVTLLFKLCQKNGKQVDIKHWR------KNRKNIASVYVDGSFVASASSEQ 251
L++++++P P+ LF L K+GK+++ ++ N I VYVD F+A S
Sbjct: 533 LDDIRRKPHPLLTLFCLGYKHGKRIEFRYRECEKSSGMNEATITEVYVDDKFIACGKSCN 592
Query: 252 KEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSY 311
+ +K+ AA ALEKL++SMP+ +D+ E E +K+ L E+C ++KWP P +
Sbjct: 593 RAASKMRAATMALEKLSESMPIEL-------VMDDSIEYENSKKTLIEICNERKWPNPIF 645
Query: 312 KIEKDEGPSHDKKFMSAVQI--ATTDGVLFITGDEKSRVKDAENSAASMMLRALRES 366
+E+ K+F+S+V I T +G L+I GD + + AE +AAS ++R L+ S
Sbjct: 646 SVERS-----SKRFVSSVTIETPTEEGTLYIEGDLEKGKEKAEYNAASHVVRTLKAS 697
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 122/353 (34%), Positives = 192/353 (54%), Gaps = 45/353 (12%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFL 89
++V VE I+NY F +K LL+EA+T +S +++ S ++RLEF+GD+ L + SN++ +
Sbjct: 2 ESVEAVEKILNYTFTDKNLLKEAITKTSGSNTESSSLLFERLEFLGDSVLLVVFSNHIEI 61
Query: 90 AYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAA---------ALDDK----- 135
YP L P L+ +R AN+S E ARVAV + ++F+ A L +K
Sbjct: 62 TYPNLHPNDLNDVRIANVSNETFARVAVNNNLHQFIIFDAPNPLLHKMSHVLTNKWCHVL 121
Query: 136 -VKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194
+K+F+EAV +E A GG +KAPK LAD+VE+IA A+Y+D+DFD+Q++W IFR L+EP
Sbjct: 122 KIKDFSEAVKEEVYPAPCGGLVKAPKFLADLVEAIAGAVYIDVDFDVQRVWEIFRVLVEP 181
Query: 195 IVTLEELQQQPQPVTL-LFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKE 253
I TL++L++QP+ L L L K GK++++ + I +V + S E
Sbjct: 182 ICTLDDLRKQPERTYLRLLGLGDKLGKRIEVFFEEEGGPKIEQKFVCSVNIEIPSVES-- 239
Query: 254 IAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKI 313
I + ++ + AQ+ + I A K L K + I
Sbjct: 240 IFHMKGDAKSTKTQAQNSSA-------------YYMIGALKSSLMSHV------KSNLPI 280
Query: 314 EKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRES 366
EK S D+K S ++I + + V + GD KS + A+NS+A M+ AL+ S
Sbjct: 281 EK----SLDEKISSNIEIPSVESVFHMKGDAKSTKEQAKNSSAYYMIGALKSS 329
>gi|413948832|gb|AFW81481.1| hypothetical protein ZEAMMB73_371069 [Zea mays]
Length = 285
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 131/249 (52%), Positives = 167/249 (67%), Gaps = 10/249 (4%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTDST-SYQRLEFIGDAALGLALSNYVFLAYP 92
+A VE ++ Y F ++ LLEEALTH S++D SYQRLEF+GDAALGLA SN+++L P
Sbjct: 39 EAAARVERLLRYQFCDRALLEEALTHQSFSDGALSYQRLEFVGDAALGLAFSNFLYLTNP 98
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE----DN 148
L PG LS LRAANISTEKLARVAV+H Y +R LD V +F E+V QE
Sbjct: 99 TLGPGALSTLRAANISTEKLARVAVRHDLYPLLRRKCPRLDLLVGQFIESVKQELMHDLA 158
Query: 149 TAVYGGS-IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP 207
TA YGGS +KAPKVLADIVE+IAAA+YVD FDL+KLW + R L EPI+T E + + QP
Sbjct: 159 TAPYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDE--QP 216
Query: 208 VTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKL--NAAREALE 265
VT L +LCQK+GK K W+K+ + +V+V G V SSEQK + + N A E
Sbjct: 217 VTTLHELCQKHGKVAQFKTWQKDGMIVVNVFVGGEMVGLGSSEQKSLGSVNRNLLSSASE 276
Query: 266 KLAQSMPVN 274
+ Q++ +N
Sbjct: 277 NIGQNLSLN 285
>gi|297794785|ref|XP_002865277.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp.
lyrata]
gi|297311112|gb|EFH41536.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp.
lyrata]
Length = 786
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/307 (42%), Positives = 190/307 (61%), Gaps = 52/307 (16%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQ 93
D++ VE I+NY+FKNK LL+EA+T S ++RLEF+GD+ L +AL+NY+ AYP
Sbjct: 2 DSMETVEKILNYSFKNKTLLKEAITLSP-----RFKRLEFLGDSVLEVALANYIHHAYPN 56
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFV-RHSAAALDDKVKEFAEAVSQEDNTAVY 152
L +L LR AN++ EK AR VKH Y+F+ +++ +K+KEF+EAVS+ED Y
Sbjct: 57 LKLQELCDLRTANVNNEKFARATVKHNLYQFIIGEKSSSPSEKIKEFSEAVSKEDVPVPY 116
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLW--------------------------- 185
GG ++APKVL DIVESIA A+Y+D+DFD+Q+ W
Sbjct: 117 GGLVEAPKVLGDIVESIAGAVYIDVDFDVQRFWEVCCVCLFFITFVFLISMLLIKREEFL 176
Query: 186 MIFRGLLEPIVTLEELQQQPQPVTL-LFKLCQKNGKQVDIKHWRKN--RKNIASVYVDGS 242
IFRGLLEPI TL++LQ QP+P L LF+L K+GK++D ++ + + ++NIA VY+DG
Sbjct: 177 QIFRGLLEPIYTLDDLQMQPKPPFLTLFRLADKHGKRIDFRYSKDDHSKENIAEVYLDGI 236
Query: 243 FVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCG 302
F+AS ++ +AK+ AA EA++KL++ +D EIE K+KL E+C
Sbjct: 237 FIASGCTKSLSVAKVLAAEEAVQKLSE-----------YD-----VEIENVKRKLIEICS 280
Query: 303 KKKWPKP 309
+K P
Sbjct: 281 TEKLRLP 287
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/340 (39%), Positives = 207/340 (60%), Gaps = 16/340 (4%)
Query: 17 RLLKEAMLTSLPSPEME-DAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIG 75
++L E SL S EM+ D+V VE I+NY F NK LL+EAL +S + +Q+L F+G
Sbjct: 452 KVLDEKKNPSLVSSEMDSDSVKAVEKILNYVFTNKNLLKEALRQTS----SLFQKLRFVG 507
Query: 76 DAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDK 135
AAL LA++N+++L YP +P +L LL+ N + LARVAVKH ++F + + K
Sbjct: 508 RAALVLAITNHIYLRYPNFEPRELELLQRGNTCNKTLARVAVKHNIHQFFIGQFKS-EKK 566
Query: 136 VKEFAEAVSQEDNTAVYGG-SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194
++ F++ V +ED+ G S + VL+D+VES+A A+Y+D++FD+++LW FRGL EP
Sbjct: 567 IEAFSKVVGKEDDPVPSDGRSERTTNVLSDLVESVAGAVYIDMNFDIKRLWESFRGLFEP 626
Query: 195 IVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNI-ASVYVDGSFVASASSEQ-K 252
+ TL++L+ +PQP+ L L K+GK D ++ K A VY+D +AS + +
Sbjct: 627 LYTLDDLRLRPQPIHTLSCLGDKDGKHFDFRYEEKGSNRYKAHVYLDDKLIASGKKKNSR 686
Query: 253 EIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYK 312
+ AK++AA EA+ KL++SMPV EI D + E AK KL E+C K+KWP P Y
Sbjct: 687 DDAKMSAAMEAVRKLSESMPV-----EIVMDRQDIVN-EDAKDKLIEICNKRKWPNPVYS 740
Query: 313 IEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAE 352
+E + G S + ++ T +G L++ GD + K AE
Sbjct: 741 VESN-GKSKGYVCSAKIETPTEEGTLYVKGDRRKLRKTAE 779
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAV--QIATTDGVLFITGDEKSRVKDA 351
K KLH++C K KWP P Y+IE++ GP +++KF+ +V +I +G + GD K + K+A
Sbjct: 366 KGKLHKICVKNKWPFPIYRIEEERGPKNEQKFVCSVKIEIPNIEGSFHMKGDAKPKKKEA 425
Query: 352 ENSAASMMLRALRES 366
ENS+A M+RAL S
Sbjct: 426 ENSSAYHMIRALESS 440
>gi|297794783|ref|XP_002865276.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp.
lyrata]
gi|297311111|gb|EFH41535.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp.
lyrata]
Length = 892
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 108/242 (44%), Positives = 169/242 (69%), Gaps = 7/242 (2%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQ 93
D+V VE I+NY+F NK LL E LTH++ S +QRL F+G+ AL LA + +++L YP+
Sbjct: 348 DSVEAVEKILNYSFVNKNLLNELLTHNT---SPLFQRLMFVGEPALSLAFTKHLYLTYPK 404
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
L+P LSLLR AN ++ ARVAVK G Y+F+ + + + +F + + +ED+
Sbjct: 405 LEPKDLSLLRDANACNDRYARVAVKKGIYQFIISNVEKPERMILDFIDMMGKEDDPDPDP 464
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQ-PVTLL 211
+KAPK+LA++V ++A A+Y+D+++++Q+LW IFRGL EPI TL++L+ QP+ P +L
Sbjct: 465 YRVVKAPKILANLVAAVAGAVYIDVNYNVQRLWEIFRGLFEPIYTLDDLRMQPKPPFLML 524
Query: 212 FKLCQKNGKQVDIKHWR--KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
F+L K+GK++D ++ + +RKNIA VY+D F+AS S++ + AKL AA EAL+KL++
Sbjct: 525 FRLADKHGKRIDFRYSKVDGSRKNIAQVYLDDMFIASGCSKRIDTAKLLAAEEALQKLSE 584
Query: 270 SM 271
M
Sbjct: 585 CM 586
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 111/391 (28%), Positives = 169/391 (43%), Gaps = 128/391 (32%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQ 93
D+V VE I+NY+F NK LL++A+T S T + RLEF GD+ L +A +NY+ YP
Sbjct: 2 DSVEAVEKILNYSFTNKTLLKDAITQRS----TLFDRLEFFGDSVLEVAFTNYIRHTYPN 57
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
L +L LR AN+S EK ARVA
Sbjct: 58 LKVKELCDLRTANVSNEKFARVA------------------------------------- 80
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL-LF 212
+ I S+ IY D +Q P+P L LF
Sbjct: 81 -------EILQIFRSLLEPIYTPEDLQMQ----------------------PKPPFLTLF 111
Query: 213 KLCQKNGKQVDIKHWRKN--RKNIA--SVYVD------GSFVASASSE---QKEIAKLNA 259
+L K+GK++D ++ + + +++IA S +V+ SFV ++ Q E++ L+
Sbjct: 112 RLTDKHGKRIDFRYSKDDDSKQHIAEDSPHVEPEDVKGKSFVICSTGNLQLQTELSSLST 171
Query: 260 ARE---ALEKLAQSMPVNCDVCEI-FDDIDEK-FEI------------------------ 290
A E A E + M + D ++ +D+ K FEI
Sbjct: 172 ASENSLADEMTQEEMVFDEDSPDVEPEDVKGKLFEICYTRKLQIQTGSSANPLTYEMTTK 231
Query: 291 --EAAKQKLH-----------ELCGKKKWPKPSYKIEKDEGPSHDKKFMSAV--QIATTD 335
K LH E+C K KWP+P + +E++ GP +++KF+ +V +I +
Sbjct: 232 QMVVDKDSLHVEPTDGRGKLIEICTKNKWPRPIFSVEEERGPKNEQKFVCSVKIEIPNIE 291
Query: 336 GVLFITGDEKSRVKDAENSAASMMLRALRES 366
G + GD KS+ K AENS+A M+RAL S
Sbjct: 292 GSFHMKGDAKSKKKQAENSSAYHMIRALESS 322
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 242 SFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELC 301
SF S++ + + + ++ A E L+ P + + D+ E E K KL E+C
Sbjct: 737 SFDISSNRKLQTLTGSSSLPTASENLSTDEPTQEQM--VIDENIPHVEPEDEKGKLFEIC 794
Query: 302 GKKKWPKPSYKIEKDEGPSHDKKFMSAV--QIATTDGVLFITG 342
K KWP P + +E++ GP ++ KF+ +V +I + +G L G
Sbjct: 795 TKNKWPNPIFSVEEERGPKNELKFVCSVKIEIPSIEGYLLHEG 837
>gi|357114316|ref|XP_003558946.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Brachypodium
distachyon]
Length = 1888
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 195/336 (58%), Gaps = 11/336 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E+I+ F+NK L EA+TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1546 LESIMGIKFQNKGFLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFTYTDLPP 1605
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG--- 153
G+L+ LRAA ++ E ARVAVKH + +RH ++AL+ +++EF + V +E + + +
Sbjct: 1606 GRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVREEISKSGFNSFG 1665
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DI+ESIA AI++D +D +W +F+ LL+P+VT E L P+ L
Sbjct: 1666 LGDCKAPKVLGDIIESIAGAIFLDSGYDTSAVWKVFQPLLDPMVTPETLPM--HPIRELQ 1723
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
+ CQ+ + ++ K R V+VDG + A + QK++A+ AAR AL L +
Sbjct: 1724 ERCQQQAEGLEYKASRAGNVATVEVFVDGIQIGVAQNPQKKMAQKLAARNALVVLKEKES 1783
Query: 273 VNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIA 332
E DD + +Q L+++C +++WP P Y+ + GP+H K+F+ AV++
Sbjct: 1784 AEAKETEKDDDKKNGAHV-FTRQTLNDICLRRQWPMPQYRCINEGGPAHAKRFVYAVRVN 1842
Query: 333 TTDGVLF--ITGDEKSRVKDAENSAASMMLRALRES 366
T+D G+ VK A++SAA ++L L S
Sbjct: 1843 TSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNGS 1878
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++ II+Y ++LE ALT +S ++ Y+R E +GDA L +S ++FL YPQ GQ
Sbjct: 1328 LKEIIDYPVPATKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1386
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVR 126
L+ +R +S L + A+ +++
Sbjct: 1387 LTRMRQQMVSNMVLYQFALNKTLQSYIQ 1414
>gi|15242329|ref|NP_199328.1| RNAse THREE-like protein 3 [Arabidopsis thaliana]
gi|75171238|sp|Q9FKF0.1|RTL3_ARATH RecName: Full=Ribonuclease 3-like protein 3; AltName:
Full=Ribonuclease III-like protein 3; Short=RNase
III-like protein 3; AltName: Full=Ribonuclease
three-like protein 3
gi|9759600|dbj|BAB11388.1| unnamed protein product [Arabidopsis thaliana]
gi|332007827|gb|AED95210.1| RNAse THREE-like protein 3 [Arabidopsis thaliana]
Length = 957
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 137/393 (34%), Positives = 202/393 (51%), Gaps = 71/393 (18%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQ 93
++V VE I+NY+F NK LL+EA+T S + RLEF GD+ L +A +NY+ YP
Sbjct: 2 NSVEAVEKILNYSFVNKTLLKEAITQKSPL----FDRLEFFGDSILEVAFTNYICHTYPN 57
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
L +L LR AN+S EK AR+AV H + F+ +L KVK FAEAV +ED+ YG
Sbjct: 58 LKVKELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAEAVRKEDDPVPYG 117
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQ-PVTLLF 212
G +KAPK+LAD +ESIAA +++D+++D+++LW IFR LLEPI T ++L QP+ P LF
Sbjct: 118 GLVKAPKILADTLESIAATVFIDVNYDVKRLWEIFRSLLEPIYTPDDLLLQPKLPFLTLF 177
Query: 213 KLCQKNGKQ--VDIKHWRKNRK----NIASVYVDGSFVASASSE--QKEIAKLNAAREA- 263
+L K+G + I+ + K N + VD V S E E+ L+ E
Sbjct: 178 RLADKHGSESTSGIRKMTTSTKILLRNKDCLDVDLEDVKGKSFEICSTELFSLSTVSENS 237
Query: 264 -LEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKK----------------- 305
++++Q V D+ E E K KL E+C +K
Sbjct: 238 LTDEMSQEEVV-------IDEDSPNVEPEDVKGKLFEICYTRKLQIQTGSSGNPLTYEMT 290
Query: 306 ------------------------------WPKPSYKIEKDEGPSHDKKFMSAV--QIAT 333
WP+P + +++++GP ++ KF+ +V +I
Sbjct: 291 TKQMVVDKDSLHVEPVNGRGELIEICTKNKWPRPIFSVQEEKGPKNEPKFVCSVKIEIPN 350
Query: 334 TDGVLFITGDEKSRVKDAENSAASMMLRALRES 366
+G + GD KS+ K AENS A M+RAL S
Sbjct: 351 IEGTFHMKGDIKSKKKQAENSLAYHMIRALESS 383
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/248 (42%), Positives = 165/248 (66%), Gaps = 9/248 (3%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVF 88
S EM+ +V VE I+NY+F NK LL+E LTH+ +S +Q L F+G++AL LA + +++
Sbjct: 408 SSEMDSSVEAVEKILNYSFVNKTLLKELLTHN---NSPLFQGLMFVGESALSLAFTKHLY 464
Query: 89 LAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN 148
L YP L+P LS+LR AN +K A VAVK G Y+ S + +F E + +ED+
Sbjct: 465 LTYPMLEPKDLSVLRDANTCHDKYACVAVKKGIYQSFIGSVPKPEKMTTDFIELMGKEDD 524
Query: 149 TAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQ-PQP 207
+KAPK+L +++ +A A+Y+D+ +++Q+L IFR LLEPI TL++L+ Q QP
Sbjct: 525 PYRV---VKAPKILVNLLAGVAGAVYIDVKYNVQRLLEIFRVLLEPIYTLDDLRMQLKQP 581
Query: 208 VTLLFKLCQKNGKQVDIKHWRK--NRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+LF+L K+GKQ+D ++ + +RKNIA VY+D F+AS +++ + AKL AA EA++
Sbjct: 582 FLMLFRLADKHGKQIDFRYSKDGGSRKNIAQVYMDDMFIASGCAKRIDTAKLLAAEEAIQ 641
Query: 266 KLAQSMPV 273
KL++ MP+
Sbjct: 642 KLSECMPI 649
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 10/140 (7%)
Query: 229 KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKF 288
+N + V G S S E + + E + M V+ D +
Sbjct: 782 ENSPYVEPVDTKGKLFESCSVESSSLPTTSENPSTYEMTTKQMVVDKDSPHV-------- 833
Query: 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAV--QIATTDGVLFITGDEKS 346
E E K KL E+C K KWP P + +E++ G +++K + +V +I +G I GD K
Sbjct: 834 EPEDEKGKLFEICAKNKWPNPIFSVEEERGQQNEQKIVCSVKIEIPNIEGTFHIKGDAKP 893
Query: 347 RVKDAENSAASMMLRALRES 366
K+AENS+A M+RAL S
Sbjct: 894 TKKEAENSSADHMIRALESS 913
>gi|125542181|gb|EAY88320.1| hypothetical protein OsI_09779 [Oryza sativa Indica Group]
Length = 1883
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 123/334 (36%), Positives = 194/334 (58%), Gaps = 13/334 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
++ ++ F+NK LL EA+TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1541 LKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPP 1600
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE---DNTAVYG 153
G+L+ LRAA ++ E ARVAVKH + +RH ++AL+ +++EF + V +E +G
Sbjct: 1601 GRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFG 1660
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DIVESIA AI++D +D +W +F+ LL P+VT E L PV L
Sbjct: 1661 LGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPM--HPVRELQ 1718
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
+ CQ+ + ++ K R V+VDG + A + QK++A+ AAR AL L +
Sbjct: 1719 ERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNALVVLKEKET 1778
Query: 273 VNCDVCEIFDDIDEKFEIEA-AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI 331
E D ++K + +Q L+++C +++WP P Y+ + GP+H K+F+ +V++
Sbjct: 1779 ATKK--EDERDGEKKNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRV 1836
Query: 332 ATTDGVLF--ITGDEKSRVKDAENSAASMMLRAL 363
T+D G+ VK A++SAA ++L L
Sbjct: 1837 NTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELL 1870
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 37/173 (21%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+++II+Y ++LE ALT +S ++ Y+R E +GDA L +S ++FL YPQ GQ
Sbjct: 1324 LKDIIDYPVPATKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1382
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFV--------RHSAAAL----DDKVKEFAEAVSQE 146
L+ +R +S L + A+ ++ R +A + D++ +E+ ++ E
Sbjct: 1383 LTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDE 1442
Query: 147 DNTA--------------------VYGGS----IKAPKVLADIVESIAAAIYV 175
++T + G S + + K LAD+VE++ YV
Sbjct: 1443 ESTGCELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYV 1495
>gi|125584735|gb|EAZ25399.1| hypothetical protein OsJ_09217 [Oryza sativa Japonica Group]
Length = 1883
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 123/334 (36%), Positives = 194/334 (58%), Gaps = 13/334 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
++ ++ F+NK LL EA+TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1541 LKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPP 1600
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE---DNTAVYG 153
G+L+ LRAA ++ E ARVAVKH + +RH ++AL+ +++EF + V +E +G
Sbjct: 1601 GRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFG 1660
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DIVESIA AI++D +D +W +F+ LL P+VT E L PV L
Sbjct: 1661 LGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPM--HPVRELQ 1718
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
+ CQ+ + ++ K R V+VDG + A + QK++A+ AAR AL L +
Sbjct: 1719 ERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNALVVLKEKET 1778
Query: 273 VNCDVCEIFDDIDEKFEIEA-AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI 331
E D ++K + +Q L+++C +++WP P Y+ + GP+H K+F+ +V++
Sbjct: 1779 ATKK--EDERDGEKKNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRV 1836
Query: 332 ATTDGVLF--ITGDEKSRVKDAENSAASMMLRAL 363
T+D G+ VK A++SAA ++L L
Sbjct: 1837 NTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELL 1870
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 37/173 (21%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+++II+Y ++LE ALT +S ++ Y+R E +GDA L +S ++FL YPQ GQ
Sbjct: 1324 LKDIIDYPVPATKILE-ALTAASCQETLCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1382
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFV--------RHSAAAL----DDKVKEFAEAVSQE 146
L+ +R +S L + A+ ++ R +A + D++ +E+ ++ E
Sbjct: 1383 LTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDE 1442
Query: 147 DNTA--------------------VYGGS----IKAPKVLADIVESIAAAIYV 175
++T + G S + + K LAD+VE++ YV
Sbjct: 1443 ESTGCELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYV 1495
>gi|75330224|sp|Q8LMR2.1|DCL1_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 1; AltName:
Full=Dicer-like protein 1; Short=OsDCL1
gi|21426125|gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group]
gi|108705906|gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza
sativa Japonica Group]
Length = 1883
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 123/334 (36%), Positives = 194/334 (58%), Gaps = 13/334 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
++ ++ F+NK LL EA+TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1541 LKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPP 1600
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE---DNTAVYG 153
G+L+ LRAA ++ E ARVAVKH + +RH ++AL+ +++EF + V +E +G
Sbjct: 1601 GRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFG 1660
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DIVESIA AI++D +D +W +F+ LL P+VT E L PV L
Sbjct: 1661 LGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPM--HPVRELQ 1718
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
+ CQ+ + ++ K R V+VDG + A + QK++A+ AAR AL L +
Sbjct: 1719 ERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNALVVLKEKET 1778
Query: 273 VNCDVCEIFDDIDEKFEIEA-AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI 331
E D ++K + +Q L+++C +++WP P Y+ + GP+H K+F+ +V++
Sbjct: 1779 ATKK--EDERDGEKKNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRV 1836
Query: 332 ATTDGVLF--ITGDEKSRVKDAENSAASMMLRAL 363
T+D G+ VK A++SAA ++L L
Sbjct: 1837 NTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELL 1870
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 37/173 (21%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+++II+Y ++LE ALT +S ++ Y+R E +GDA L +S ++FL YPQ GQ
Sbjct: 1324 LKDIIDYPVPATKILE-ALTAASCQETLCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1382
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFV--------RHSAAAL----DDKVKEFAEAVSQE 146
L+ +R +S L + A+ ++ R +A + D++ +E+ ++ E
Sbjct: 1383 LTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDE 1442
Query: 147 DNTA--------------------VYGGS----IKAPKVLADIVESIAAAIYV 175
++T + G S + + K LAD+VE++ YV
Sbjct: 1443 ESTGCELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYV 1495
>gi|110520367|gb|ABG74922.1| Dicer-like 1b protein [Physcomitrella patens]
Length = 1695
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 188/337 (55%), Gaps = 15/337 (4%)
Query: 43 INYNFKNKRLLEEALTHSSYTD--STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+ + F+ + LL EA+TH+S YQRLEF+GDA L ++ Y+F Y L PG+L+
Sbjct: 1351 VGHEFRERSLLVEAITHASRPSLGVPCYQRLEFVGDAVLDHLITRYLFFKYTNLPPGRLT 1410
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE-DNTAV--YG-GSI 156
LRAA ++ E ARVAVKH ++ +RH + AL+ +++ F + E D V +G G
Sbjct: 1411 DLRAAAVNNENFARVAVKHSYHLHLRHGSTALETQIRNFVNDIHSELDKPGVNSFGLGDF 1470
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
KAPKVL DI ESIA A+++D D ++W +F LL+P+V+ E L PV L + CQ
Sbjct: 1471 KAPKVLGDIFESIAGALFLDARLDTHQVWKVFEPLLQPMVSPETL--PIHPVRGLQERCQ 1528
Query: 217 KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD 276
+ + ++ K R VYVDG + S S QK++A+ AR AL KL +
Sbjct: 1529 QEAEGLEYKVSRAESVATVEVYVDGVQIGSTQSAQKKMAQKLGARNALVKLKDKEVIKVK 1588
Query: 277 VCEIFDDID-----EKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI 331
D++ + ++ +++LC K++WP P YK + GP+H KKF +V++
Sbjct: 1589 AEAENGDLNAGKSSKNGHTNFTRKTINDLCLKRQWPMPQYKCVLESGPAHAKKFTLSVRV 1648
Query: 332 -ATTDG-VLFITGDEKSRVKDAENSAASMMLRALRES 366
TTDG G+ + VK A++SAA ++L LR S
Sbjct: 1649 LTTTDGWTEECVGEPMASVKKAKDSAALVLLATLRRS 1685
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 56 ALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARV 115
ALT +S ++ SY+R E + DA L +S+ +FL +P GQL+ +R +S L +
Sbjct: 1136 ALTAASGQETFSYERAELLSDAYLEWVVSHRLFLKFPSKHEGQLTRMRQKIVSNSVLYQH 1195
Query: 116 AVKHGFYKFVR 126
A++ G +++
Sbjct: 1196 ALEKGLQSYIQ 1206
>gi|62320294|dbj|BAD94606.1| CAF protein [Arabidopsis thaliana]
Length = 690
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 189/348 (54%), Gaps = 22/348 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E + Y FK K LL EA+TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 343 LERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPP 402
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG--- 153
G+L+ LRAA ++ E ARVAVKH + ++RH ++AL+ +++EF + V E + +
Sbjct: 403 GRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFG 462
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DIVESIA AI++D D W +F+ LL+P+VT E L PV L
Sbjct: 463 LGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPM--HPVRELQ 520
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIA------------KLNAA 260
+ CQ+ + ++ K R V++DG V A + QK++A K
Sbjct: 521 ERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEI 580
Query: 261 REALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPS 320
E+ EK + D E + + +Q L+++C +K WP PSY+ K+ GP+
Sbjct: 581 AESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPA 640
Query: 321 HDKKFMSAVQIATTDGVLF--ITGDEKSRVKDAENSAASMMLRALRES 366
H K+F V++ T+D G+ VK A++SAA ++L L ++
Sbjct: 641 HAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKT 688
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 35/172 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++N+I+Y ++LE ALT +S ++ Y+R E +GDA L +S ++FL YPQ GQ
Sbjct: 127 LKNLISYPIPTSKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 185
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFV--------RHSAAAL----DDKVKEFAEA---- 142
L+ +R +S L + A+ G ++ R SA + D+ K+ +
Sbjct: 186 LTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDE 245
Query: 143 ----VSQEDNTAVYGGSIK--------------APKVLADIVESIAAAIYVD 176
VS+E++ G ++ + K LAD+VE++ YV+
Sbjct: 246 EQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVE 297
>gi|374259482|gb|AEZ02177.1| Dicer [Arabidopsis thaliana]
Length = 1886
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 189/348 (54%), Gaps = 22/348 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E + Y FK K LL EA+TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1539 LERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPP 1598
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG--- 153
G+L+ LRAA ++ E ARVAVKH + ++RH ++AL+ +++EF + V E + +
Sbjct: 1599 GRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFG 1658
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DIVESIA AI++D D W +F+ LL+P+VT E L PV L
Sbjct: 1659 LGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPM--HPVRELQ 1716
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIA------------KLNAA 260
+ CQ+ + ++ K R V++DG V A + QK++A K
Sbjct: 1717 ERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEI 1776
Query: 261 REALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPS 320
E+ EK + D E + + +Q L+++C +K WP PSY+ K+ GP+
Sbjct: 1777 AESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPA 1836
Query: 321 HDKKFMSAVQIATTDGVLF--ITGDEKSRVKDAENSAASMMLRALRES 366
H K+F V++ T+D G+ VK A++SAA ++L L ++
Sbjct: 1837 HAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKT 1884
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 35/172 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++N+I+Y ++LE ALT +S ++ Y+R E +GDA L +S ++FL YPQ GQ
Sbjct: 1323 LKNLISYPIPTSKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1381
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFV--------RHSAAAL----DDKVKEFAEA---- 142
L+ +R +S L + A+ G ++ R SA + D+ K+ +
Sbjct: 1382 LTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDE 1441
Query: 143 ----VSQEDNTAVYGGSIK--------------APKVLADIVESIAAAIYVD 176
VS+E++ G ++ + K LAD+VE++ YV+
Sbjct: 1442 EQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVE 1493
>gi|6102610|gb|AAF03534.1|AF187317_1 CAF protein [Arabidopsis thaliana]
Length = 1909
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 189/348 (54%), Gaps = 22/348 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E + Y FK K LL EA+TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1562 LERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPP 1621
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG--- 153
G+L+ LRAA ++ E ARVAVKH + ++RH ++AL+ +++EF + V E + +
Sbjct: 1622 GRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFG 1681
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DIVESIA AI++D D W +F+ LL+P+VT E L PV L
Sbjct: 1682 LGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPM--HPVRELQ 1739
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIA------------KLNAA 260
+ CQ+ + ++ K R V++DG V A + QK++A K
Sbjct: 1740 ERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEI 1799
Query: 261 REALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPS 320
E+ EK + D E + + +Q L+++C +K WP PSY+ K+ GP+
Sbjct: 1800 AESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPA 1859
Query: 321 HDKKFMSAVQIATTDGVLF--ITGDEKSRVKDAENSAASMMLRALRES 366
H K+F V++ T+D G+ VK A++SAA ++L L ++
Sbjct: 1860 HAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKT 1907
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 35/172 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++N+I+Y ++LE ALT +S ++ Y+R E +GDA L +S ++FL YPQ GQ
Sbjct: 1346 LKNLISYPIPTSKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1404
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFV--------RHSAAAL----DDKVKEFAEA---- 142
L+ +R +S L + A+ G ++ R SA + D+ K+ +
Sbjct: 1405 LTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDE 1464
Query: 143 ----VSQEDNTAVYGGSIK--------------APKVLADIVESIAAAIYVD 176
VS+E++ G ++ + K LAD+VE++ YV+
Sbjct: 1465 EQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVE 1516
>gi|15223286|ref|NP_171612.1| endoribonuclease Dicer [Arabidopsis thaliana]
gi|34922211|sp|Q9SP32.2|DCL1_ARATH RecName: Full=Endoribonuclease Dicer homolog 1; AltName:
Full=Dicer-like protein 1; Short=AtDCL1; AltName:
Full=Protein ABNORMAL SUSPENSOR 1; AltName: Full=Protein
CARPEL FACTORY; AltName: Full=Protein SHORT INTEGUMENTS
1; AltName: Full=Protein SUSPENSOR 1
gi|11559645|gb|AAG38019.1|AF292940_1 short integuments 1 [Arabidopsis thaliana]
gi|11559647|gb|AAG38020.1|AF292941_1 short integuments 1 [Arabidopsis thaliana]
gi|332189099|gb|AEE27220.1| endoribonuclease Dicer [Arabidopsis thaliana]
Length = 1909
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 189/348 (54%), Gaps = 22/348 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E + Y FK K LL EA+TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1562 LERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPP 1621
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG--- 153
G+L+ LRAA ++ E ARVAVKH + ++RH ++AL+ +++EF + V E + +
Sbjct: 1622 GRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFG 1681
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DIVESIA AI++D D W +F+ LL+P+VT E L PV L
Sbjct: 1682 LGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPM--HPVRELQ 1739
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIA------------KLNAA 260
+ CQ+ + ++ K R V++DG V A + QK++A K
Sbjct: 1740 ERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEI 1799
Query: 261 REALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPS 320
E+ EK + D E + + +Q L+++C +K WP PSY+ K+ GP+
Sbjct: 1800 AESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPA 1859
Query: 321 HDKKFMSAVQIATTDGVLF--ITGDEKSRVKDAENSAASMMLRALRES 366
H K+F V++ T+D G+ VK A++SAA ++L L ++
Sbjct: 1860 HAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKT 1907
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 35/172 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++N+I+Y ++LE ALT +S ++ Y+R E +GDA L +S ++FL YPQ GQ
Sbjct: 1346 LKNLISYPIPTSKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1404
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFV--------RHSAAAL----DDKVKEFAEA---- 142
L+ +R +S L + A+ G ++ R SA + D+ K+ +
Sbjct: 1405 LTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDE 1464
Query: 143 ----VSQEDNTAVYGGSIK--------------APKVLADIVESIAAAIYVD 176
VS+E++ G ++ + K LAD+VE++ YV+
Sbjct: 1465 EQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVE 1516
>gi|297848414|ref|XP_002892088.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp.
lyrata]
gi|297337930|gb|EFH68347.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp.
lyrata]
Length = 1962
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 129/348 (37%), Positives = 200/348 (57%), Gaps = 22/348 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E + + FK K LL EA+TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1615 LERALKFEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPP 1674
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG--- 153
G+L+ LRAA ++ E ARVAVKH + ++RH ++AL+ +++EF + V E + +
Sbjct: 1675 GRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFG 1734
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DIVESIA AI++D D W +F+ LL+P+VT E L PV L
Sbjct: 1735 LGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPM--HPVRELQ 1792
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL-----EKL 267
+ CQ+ + ++ K R V++DG V A + QK++A+ AAR AL +++
Sbjct: 1793 ERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEI 1852
Query: 268 AQSMP--VNCDVCEIFDDIDEKFEIEA-----AKQKLHELCGKKKWPKPSYKIEKDEGPS 320
A+S VN + E DD + + +Q L+++C +K WP PSY+ K+ GP+
Sbjct: 1853 AESKEKRVNGNAVENQDDENGNANKKNGNQTFTRQTLNDICLRKNWPMPSYRCVKEGGPA 1912
Query: 321 HDKKFMSAVQIATTDGVLF--ITGDEKSRVKDAENSAASMMLRALRES 366
H K+F V++ T+D G+ VK A++SAA ++L+ L ++
Sbjct: 1913 HAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLQLLNKT 1960
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 82/172 (47%), Gaps = 35/172 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++N+I+Y ++LE ALT +S ++ Y+R E +GDA L +S Y+FL YPQ GQ
Sbjct: 1399 LKNLISYPIPTSKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRYLFLKYPQKHEGQ 1457
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFV--------RHSAAAL----DDKVKEFAEA---- 142
L+ +R +S L + A+ G ++ R SA + D+ K+ +
Sbjct: 1458 LTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDE 1517
Query: 143 ----VSQEDNTAVYGGSIK--------------APKVLADIVESIAAAIYVD 176
VS+E++ G ++ + K LAD+VE++ YV+
Sbjct: 1518 EQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVE 1569
>gi|334182203|ref|NP_001184881.1| endoribonuclease Dicer [Arabidopsis thaliana]
gi|332189100|gb|AEE27221.1| endoribonuclease Dicer [Arabidopsis thaliana]
Length = 1910
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 189/348 (54%), Gaps = 22/348 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E + Y FK K LL EA+TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1563 LERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPP 1622
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG--- 153
G+L+ LRAA ++ E ARVAVKH + ++RH ++AL+ +++EF + V E + +
Sbjct: 1623 GRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFG 1682
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DIVESIA AI++D D W +F+ LL+P+VT E L PV L
Sbjct: 1683 LGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPM--HPVRELQ 1740
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIA------------KLNAA 260
+ CQ+ + ++ K R V++DG V A + QK++A K
Sbjct: 1741 ERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEI 1800
Query: 261 REALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPS 320
E+ EK + D E + + +Q L+++C +K WP PSY+ K+ GP+
Sbjct: 1801 AESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPA 1860
Query: 321 HDKKFMSAVQIATTDGVLF--ITGDEKSRVKDAENSAASMMLRALRES 366
H K+F V++ T+D G+ VK A++SAA ++L L ++
Sbjct: 1861 HAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKT 1908
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 35/172 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++N+I+Y ++LE ALT +S ++ Y+R E +GDA L +S ++FL YPQ GQ
Sbjct: 1347 LKNLISYPIPTSKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1405
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFV--------RHSAAAL----DDKVKEFAEA---- 142
L+ +R +S L + A+ G ++ R SA + D+ K+ +
Sbjct: 1406 LTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDE 1465
Query: 143 ----VSQEDNTAVYGGSIK--------------APKVLADIVESIAAAIYVD 176
VS+E++ G ++ + K LAD+VE++ YV+
Sbjct: 1466 EQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVE 1517
>gi|414864448|tpg|DAA43005.1| TPA: hypothetical protein ZEAMMB73_941906 [Zea mays]
Length = 1307
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/333 (36%), Positives = 190/333 (57%), Gaps = 12/333 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E + F+NK LL EA+TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 968 LEGALGIKFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFTYTDLPP 1027
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG--- 153
G+L+ LRAA ++ E ARVAVKH + +RH ++AL+ +++EF + V +E + +
Sbjct: 1028 GRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELSKPGFNSFG 1087
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DI ESIA AI++D +W +F+ LL+P+VT + L PV L
Sbjct: 1088 LGDCKAPKVLGDIFESIAGAIFLDSGCATSVVWKVFQPLLDPMVTPDTLPM--HPVRELQ 1145
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
+ CQ+ + ++ K R V VDG + A + QK++A+ AAR AL L +
Sbjct: 1146 ERCQQQAEGLEYKASRTGNVATVEVLVDGIQIGVAQNPQKKMAQKLAARNALVVLKEKET 1205
Query: 273 VNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIA 332
E D ++K + +Q L+++C +++WP P Y+ + GP+H K+F+ AV++
Sbjct: 1206 AAKKDTE--KDGEKKNGSQFTRQTLNDICLRRQWPMPQYRCINEGGPAHAKRFVYAVRVN 1263
Query: 333 TTDGVLF--ITGDEKSRVKDAENSAASMMLRAL 363
T+D G+ VK A++SAA ++L L
Sbjct: 1264 TSDSGWTDECIGEPMPSVKKAKDSAAVLLLELL 1296
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+++II Y ++LE ALT +S ++ Y+R E +GDA L +S ++FL YPQ GQ
Sbjct: 749 LKDIIGYPVPANKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 807
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVR 126
L+ +R +S L + A+ +++
Sbjct: 808 LTRMRQQMVSNMILYQYALNKNLQSYIQ 835
>gi|225453660|ref|XP_002268369.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Vitis vinifera]
Length = 1971
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 122/339 (35%), Positives = 189/339 (55%), Gaps = 21/339 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E +N F N+ LL EA+TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1635 LEGALNIKFNNRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPP 1694
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG--- 153
G+L+ LRAA ++ E ARVAVKH + +RH ++AL+ ++++F + V E + +
Sbjct: 1695 GRLTDLRAAAVNNENFARVAVKHKLHIHLRHGSSALEKQIRDFVKEVQDELSKPGFNSFG 1754
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DIVESIA AI++D D +W +F+ LL P+VT E L PV L
Sbjct: 1755 LGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPM--HPVRELQ 1812
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
+ CQ+ + ++ K R V++DG + A + QK++A+ AAR AL L +
Sbjct: 1813 ERCQQQAEGLEYKATRSGNLATVEVFIDGVQIGIAQNPQKKMAQKLAARNALVVLKER-- 1870
Query: 273 VNCDVCEIFDDIDEKFEIEA------AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFM 326
+ E + DE + + +Q L+++C ++ WP P Y+ + GP+H K+F
Sbjct: 1871 ---ETAEAKEGDDENGKKKKNGSQTFTRQTLNDICLRRNWPMPVYRCVNEGGPAHAKRFT 1927
Query: 327 SAVQIATTDGVLF--ITGDEKSRVKDAENSAASMMLRAL 363
AV++ T D G+ VK A++SAA ++L L
Sbjct: 1928 FAVRVNTNDKGWTDECIGEPMPSVKKAKDSAAVLLLELL 1966
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++++INY ++LE ALT +S ++ Y+R E +GDA L +S ++FL YPQ GQ
Sbjct: 1414 LKDVINYPVPAAKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1472
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVR 126
L+ +R +S L + A+ G +++
Sbjct: 1473 LTRMRQQMVSNMVLYQSALCKGLQSYIQ 1500
>gi|157285009|gb|ABV31244.1| dicer-like 1 [Physcomitrella patens]
Length = 1662
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 186/337 (55%), Gaps = 31/337 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST--SYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E I + F+ + LL EA+TH+S S YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1324 LEASIGHKFRKRSLLVEAITHASRPSSGVPGYQRLEFVGDAVLDYLITRFLFFKYTDLPP 1383
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE-DNTAV--YG 153
G+L+ LRAA ++ E ARVAVKH F+ +RH ++AL+ +++ F + E D V +G
Sbjct: 1384 GRLTDLRAAAVNNENFARVAVKHSFHLHLRHGSSALETQIRNFVNDIQTELDKPGVNSFG 1443
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DI+ESIA A+++D + +W +F LL+P+VT E L PV L
Sbjct: 1444 LGDFKAPKVLGDILESIAGALFLDACLETDHVWKVFEPLLQPMVTPETLPM--HPVRELQ 1501
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
+ CQ+ + ++ K R VYVDG + SA + QK++A+ AAR AL L +
Sbjct: 1502 ERCQQQAEALEYKASRAGNVATVEVYVDGVQIGSAQNAQKKMAQKLAARNALVILKEK-- 1559
Query: 273 VNCDVCEIFDDIDEKFEIEA-------------AKQKLHELCGKKKWPKPSYKIEKDEGP 319
E+ + E EA +Q L++LC K++WP P Y+ + GP
Sbjct: 1560 ------EVTKEKSEAENSEANNGKSSKNGHTNFTRQTLNDLCLKRQWPMPQYRCVLEGGP 1613
Query: 320 SHDKKFMSAVQI-ATTDG-VLFITGDEKSRVKDAENS 354
+H KKF +V++ TTDG GD VK A++S
Sbjct: 1614 AHAKKFTFSVRVLTTTDGWTEECVGDPMPSVKKAKDS 1650
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
I+Y ++LE ALT +S ++ SY+R E +GDA L +S +FL YP GQL+ +
Sbjct: 1100 IDYPIAASKVLE-ALTAASCQETFSYERAELLGDAYLKWVVSRRLFLKYPCKHEGQLTRM 1158
Query: 103 RAANISTEKLARVAVKHGFYKFVR 126
R +S L + A+ G +++
Sbjct: 1159 RQQIVSNSVLYQYALDKGLQSYIQ 1182
>gi|449432976|ref|XP_004134274.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Cucumis sativus]
Length = 1986
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 185/336 (55%), Gaps = 29/336 (8%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E +N F+++ LL EA+TH+S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1650 LEGALNIKFQDRGLLVEAITHASRPSCGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPP 1709
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE---DNTAVYG 153
G+L+ LRAA ++ E ARVAVKH + +RH ++AL+ ++++F + V E +G
Sbjct: 1710 GRLTDLRAAAVNNENFARVAVKHNLHIHLRHGSSALEKQIRDFVKEVQDELLKPGFNSFG 1769
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DIVESIA AI++D D +W +F+ LL P+VT E L PV L
Sbjct: 1770 LGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWRVFQPLLHPMVTPETLPM--HPVRELQ 1827
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
+ CQ+ + ++ K R V++DG + A + QK++A+ AAR AL L +
Sbjct: 1828 ERCQQQAEGLEYKATRIGNLATVEVFIDGVQIGIAQNPQKKMAQKLAARNALAVLKEKE- 1886
Query: 273 VNCDVCEIFDDIDEKFEIEAAKQK----------LHELCGKKKWPKPSYKIEKDEGPSHD 322
DD EK E K+K L+++C ++ WP P Y+ + GP+H
Sbjct: 1887 --------MDDAKEKIEDNGKKKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHA 1938
Query: 323 KKFMSAVQIATTDGVLF--ITGDEKSRVKDAENSAA 356
K+F AV++ TTD G+ VK A++SAA
Sbjct: 1939 KRFTFAVRVNTTDKGWTDECVGEPMPSVKKAKDSAA 1974
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++++INY ++LE ALT +S ++ Y+R E +GDA L +S ++FL YP+ GQ
Sbjct: 1429 LKHMINYPVPASKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPRKHEGQ 1487
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVR 126
L+ +R +S L + A+ +++
Sbjct: 1488 LTRMRQQMVSNMVLYQYALSKKLQSYIQ 1515
>gi|168010516|ref|XP_001757950.1| dsRNA-specific nuclease dicer and related ribonuclease
[Physcomitrella patens subsp. patens]
gi|162690827|gb|EDQ77192.1| dsRNA-specific nuclease dicer and related ribonuclease
[Physcomitrella patens subsp. patens]
Length = 1662
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 186/337 (55%), Gaps = 31/337 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST--SYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E I + F+ + LL EA+TH+S S YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1324 LEASIGHKFRKRSLLVEAITHASRPSSGVPCYQRLEFVGDAVLDYLITRFLFFKYTDLPP 1383
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE-DNTAV--YG 153
G+L+ LRAA ++ E ARVAVKH F+ +RH ++AL+ +++ F + E D V +G
Sbjct: 1384 GRLTDLRAAAVNNENFARVAVKHSFHLHLRHGSSALETQIRNFVNDIQTELDKPGVNSFG 1443
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DI+ESIA A+++D + +W +F LL+P+VT E L PV L
Sbjct: 1444 LGDFKAPKVLGDILESIAGALFLDACLETDHVWKVFEPLLQPMVTPETLPM--HPVRELQ 1501
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
+ CQ+ + ++ K R VYVDG + SA + QK++A+ AAR AL L +
Sbjct: 1502 ERCQQQAEALEYKASRAGNVATVEVYVDGVQIGSAQNAQKKMAQKLAARNALVILKEK-- 1559
Query: 273 VNCDVCEIFDDIDEKFEIEA-------------AKQKLHELCGKKKWPKPSYKIEKDEGP 319
E+ + E EA +Q L++LC K++WP P Y+ + GP
Sbjct: 1560 ------EVTKEKSEAENSEANNGKSSKNGHTNFTRQTLNDLCLKRQWPMPQYRCVLEGGP 1613
Query: 320 SHDKKFMSAVQI-ATTDG-VLFITGDEKSRVKDAENS 354
+H KKF +V++ TTDG GD VK A++S
Sbjct: 1614 AHAKKFTFSVRVLTTTDGWTEECVGDPMPSVKKAKDS 1650
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
I+Y ++LE ALT +S ++ SY+R E +GDA L +S +FL YP GQL+ +
Sbjct: 1100 IDYPIAASKVLE-ALTAASCQETFSYERAELLGDAYLKWVVSRRLFLKYPCKHEGQLTRM 1158
Query: 103 RAANISTEKLARVAVKHGFYKFVR 126
R +S L + A+ G +++
Sbjct: 1159 RQQIVSNSVLYQYALDKGLQSYIQ 1182
>gi|449478272|ref|XP_004155270.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 1-like
[Cucumis sativus]
Length = 1987
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 123/336 (36%), Positives = 185/336 (55%), Gaps = 29/336 (8%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E +N F+++ LL EA+TH+S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1651 LEGALNIKFQDRGLLVEAITHASRPSCGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPP 1710
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE---DNTAVYG 153
G+L+ LRAA ++ E ARVAVKH + +RH ++AL+ ++++F + V E +G
Sbjct: 1711 GRLTDLRAAAVNNENFARVAVKHNLHIHLRHGSSALEKQIRDFVKEVQDELLKPGFNSFG 1770
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DIVESIA AI++D D +W +F+ LL P+VT E L PV L
Sbjct: 1771 LGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWRVFQPLLHPMVTPETLPM--HPVRELQ 1828
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
+ CQ+ + ++ K R V++DG + A + QK++A+ AAR AL L +
Sbjct: 1829 ERCQQQAEGLEYKATRIGNLATVEVFIDGVQIGIAQNPQKKMAQKLAARNALAVLKEKE- 1887
Query: 273 VNCDVCEIFDDIDEKFEIEAAKQK----------LHELCGKKKWPKPSYKIEKDEGPSHD 322
DD EK E K+K L+++C ++ WP P Y+ + GP+H
Sbjct: 1888 --------MDDAKEKXEDNGKKKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHA 1939
Query: 323 KKFMSAVQIATTDGVLF--ITGDEKSRVKDAENSAA 356
K+F AV++ TTD G+ VK A++SAA
Sbjct: 1940 KRFTFAVRVNTTDKGWTDECVGEPMPSVKKAKDSAA 1975
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++++INY ++LE ALT +S ++ Y+R E +GDA L +S ++FL YP+ GQ
Sbjct: 1430 LKHMINYPVPASKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPRKHEGQ 1488
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVR 126
L+ +R +S L + A+ +++
Sbjct: 1489 LTRMRQQMVSNMVLYQYALSKKLQSYIQ 1516
>gi|255548081|ref|XP_002515097.1| dicer-1, putative [Ricinus communis]
gi|223545577|gb|EEF47081.1| dicer-1, putative [Ricinus communis]
Length = 1543
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 191/338 (56%), Gaps = 19/338 (5%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E +N F+++ LL EA+TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1207 LEGALNIKFQDRGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPP 1266
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG--- 153
G+L+ LRAA ++ E ARVAV H + +RH ++AL+ ++++F V E + +
Sbjct: 1267 GRLTDLRAAAVNNENFARVAVNHKLHVHLRHGSSALEKQIRDFVREVQDELSKPGFNSFG 1326
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DIVESIA AI++D D +W +F+ LL P+VT E L PV L
Sbjct: 1327 LGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPM--HPVRELQ 1384
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL-----EKL 267
+ CQ+ + ++ K R V++DG V A + QK++A+ AAR AL ++
Sbjct: 1385 ERCQQQAEGLEYKATRSGNLATVEVFIDGVQVGVAQNPQKKMAQKLAARNALVILKDKET 1444
Query: 268 AQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMS 327
A++ D + + ++ F +Q L+++C ++ WP P Y+ + GP+H K+F
Sbjct: 1445 AEAKEKGNDNGKKKKNGNQTF----TRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTF 1500
Query: 328 AVQIATTDGVLF--ITGDEKSRVKDAENSAASMMLRAL 363
AV++ TTD G+ VK A++SAA ++L L
Sbjct: 1501 AVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELL 1538
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+++II+Y+ ++LE ALT +S ++ Y+R E +GDA L +S ++FL YPQ GQ
Sbjct: 986 LKDIIHYSVPALKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1044
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVR 126
L+ +R +S L + A+ G +++
Sbjct: 1045 LTRMRQQMVSNMVLYQYALIKGLQSYIQ 1072
>gi|302815180|ref|XP_002989272.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii]
gi|300143015|gb|EFJ09710.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii]
Length = 524
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 115/357 (32%), Positives = 196/357 (54%), Gaps = 17/357 (4%)
Query: 19 LKEAMLTSLPSPEMEDAVFY--VENIINYNFKNKRLLEEALTHSSYTDSTS---YQRLEF 73
L+ A S+ SPE+ +++ + +EN + Y+F ++ LL +ALTHSS ++ Y+RLEF
Sbjct: 176 LQIARAGSVVSPEVLNSIDFEGLENTLGYSFGSRNLLAQALTHSSSRQASMVPIYERLEF 235
Query: 74 IGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALD 133
IGDA L L+ +++ +Y L PG+L+ LR A +++E AR VKH + + H +
Sbjct: 236 IGDAVLDHLLTRHIYFSYKDLHPGRLTDLRCAALNSESFARAMVKHKLHAHILHESNDFH 295
Query: 134 DKVKEFAEAVSQEDNTAVYG---GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRG 190
++K +A+ + A+Y G++KAPKVL D+ +S+ A+Y+D +L ++W +F
Sbjct: 296 SQIKTYAKHALNMEENAIYSYGFGAVKAPKVLGDVFQSLVGALYIDSGLNLDQVWKVFEP 355
Query: 191 LLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSE 250
LL+P+VT E + PV L++LC K+ K+++ + +A V + ++
Sbjct: 356 LLQPLVTPEAVPI--HPVRELYELCDKHMKKLEWDYSLSGDLFLARALVGNKVLGRGTNV 413
Query: 251 QKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPS 310
QK++AK AA A+ KL +S + +EK E ++Q LHELC ++ WP P
Sbjct: 414 QKKMAKKLAAINAIAKLDKS------ASPLTPSQEEKTSGEFSRQALHELCSQRGWPCPD 467
Query: 311 YKIEKDEGPSHDKKFMSAVQIATTDG-VLFITGDEKSRVKDAENSAASMMLRALRES 366
Y + GP+H K F + G G + + A++SAA M++ L++S
Sbjct: 468 YNTHSETGPAHAKMFTCTASVRIEQGEKQECIGQPRPTINKAKDSAARMLMETLQKS 524
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 16/133 (12%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
INYN ++LE ALT ++ + Y+R+E +GDA L A+S ++L + G+L++
Sbjct: 35 INYNIPASKILE-ALTAANCHEPYCYERIELLGDAYLKWAVSTRLYLKFSDFPEGELTIT 93
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
R IS L +A++ G +VR + F D + + KVL
Sbjct: 94 RGKIISNSALHYLALEKGLETYVR---------INPFVPGREPTDLQEL------SSKVL 138
Query: 163 ADIVESIAAAIYV 175
A++VE++ A YV
Sbjct: 139 ANVVEALIGAYYV 151
>gi|115468004|ref|NP_001057601.1| Os06g0358800 [Oryza sativa Japonica Group]
gi|75254269|sp|Q69KJ0.1|RTL3_ORYSJ RecName: Full=Ribonuclease 3-like protein 3; AltName:
Full=Ribonuclease III-like protein 3; Short=RNase
III-like protein 3
gi|51091751|dbj|BAD36550.1| CAF protein-like [Oryza sativa Japonica Group]
gi|113595641|dbj|BAF19515.1| Os06g0358800 [Oryza sativa Japonica Group]
gi|125597181|gb|EAZ36961.1| hypothetical protein OsJ_21299 [Oryza sativa Japonica Group]
Length = 299
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 111/260 (42%), Positives = 162/260 (62%), Gaps = 19/260 (7%)
Query: 39 VENIINYNFKNKRLLEEALTHSS----YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQL 94
VE+++ Y F++K L+EEALTH S Y +Y+RLE++GDA L +S VFL Y QL
Sbjct: 42 VESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSREVFLTYGQL 101
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
PG L+ LRAAN+ EKLARVAV HG + F+RH A LD ++ +F E +S + G
Sbjct: 102 QPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMYPIHS--NG 159
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL 214
+ PKVL D+VES+ AIY D +F+ + +W +F+ L +P+++LE L + PV+ LF+
Sbjct: 160 LLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGK--HPVSELFEF 217
Query: 215 CQKNGKQVDI--KHWRKNRKNIASVYVDGSFVASAS-SEQKEIAKLNAAREALEKL---- 267
CQK + V I W KN V +DG V A+ +++KEIA+ AA+ AL+KL
Sbjct: 218 CQKTRRGVKIVKDEWDKNL--TVEVLIDGEMVGRATYAQKKEIAQNRAAKAALDKLKETL 275
Query: 268 --AQSMPVNCDVCEIFDDID 285
+Q+ P++ +V E F+ ID
Sbjct: 276 GQSQTEPMSAEVSEQFNKID 295
>gi|302764440|ref|XP_002965641.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii]
gi|300166455|gb|EFJ33061.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii]
Length = 524
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 114/357 (31%), Positives = 197/357 (55%), Gaps = 17/357 (4%)
Query: 19 LKEAMLTSLPSPEMEDAVFY--VENIINYNFKNKRLLEEALTHSSYTDSTS---YQRLEF 73
L+ A S+ SPE+ +++ + +EN + Y+F+++ LL +ALTHSS ++ Y+RLEF
Sbjct: 176 LQIARAGSVVSPEVLNSIDFEGLENTLGYSFRSRNLLAQALTHSSSRQASMVPIYERLEF 235
Query: 74 IGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALD 133
IGDA L L+ +++ +Y L PG+L+ LR A +++E AR VKH + + H +
Sbjct: 236 IGDAVLDHLLTRHIYFSYKDLHPGRLTDLRCAALNSESFARAMVKHKLHAHILHESNDFH 295
Query: 134 DKVKEFAEAVSQEDNTAVYG---GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRG 190
++K +A+ + A+Y G++KAPKVL D+ +S+ A+Y+D +L ++W +F
Sbjct: 296 SQIKTYAKHALNMEENAIYSYGFGAVKAPKVLGDVFQSLVGAVYIDSGLNLDQVWKVFEP 355
Query: 191 LLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSE 250
LL+P+VT E + PV L++LC K+ K+++ + +A V + ++
Sbjct: 356 LLQPLVTPEAVPI--HPVRELYELCDKHLKKLEWDYSLSGDLFLARALVGNKVLGRGTNV 413
Query: 251 QKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPS 310
QK++AK AA A+ KL +S + +EK E ++Q LHELC ++ WP P
Sbjct: 414 QKKMAKKLAAINAIAKLDKS------ASPLTPSQEEKASGEFSRQALHELCSQRGWPCPD 467
Query: 311 YKIEKDEGPSHDKKFMSAVQIATTDG-VLFITGDEKSRVKDAENSAASMMLRALRES 366
Y + GP+H K F + G G + + A++SAA +++ L++S
Sbjct: 468 YNTHSETGPAHAKMFTCTASVRIEQGEKQECIGQPRPTINKAKDSAARVLMETLQKS 524
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 16/133 (12%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
INYN ++LE ALT ++ + Y+R+E +GDA L A+S ++L + G+L++
Sbjct: 35 INYNIPASKILE-ALTAANCHEPYCYERIELLGDAYLKWAVSTRLYLKFSDFPEGELTIT 93
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
R IS L +A++ G +VR + F D + + KVL
Sbjct: 94 RGKIISNSALHYLALEKGLETYVR---------INPFVPGREPTDLQEL------SSKVL 138
Query: 163 ADIVESIAAAIYV 175
A++VE++ A YV
Sbjct: 139 ANVVEALIGAYYV 151
>gi|356571277|ref|XP_003553805.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Glycine max]
Length = 1942
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 187/327 (57%), Gaps = 13/327 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E +N FK++ LL E++TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1608 LEGALNMKFKDRGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPP 1667
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG--- 153
G+L+ LRAA ++ E ARVAVKH + +RH ++AL+ ++KEF + V E + +
Sbjct: 1668 GRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFG 1727
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DI+ESIA AI++D D +W +F+ LL P+VT E L PV L
Sbjct: 1728 LGDCKAPKVLGDILESIAGAIFLDSGRDTTVVWKVFQPLLHPMVTPETLPM--HPVRELQ 1785
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
+ CQ+ + ++ K R V++DG V +A + QK++A+ AAR AL L +
Sbjct: 1786 ERCQQQAEGLEYKASRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEV 1845
Query: 273 VNCDVCEIFDDIDEKFEIEA-AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI 331
E DD +K + +Q L+++C ++ WP P Y+ + GP+H K+F AV++
Sbjct: 1846 GKTQ--EKNDDNGKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRV 1903
Query: 332 ATTDGVLF--ITGDEKSRVKDAENSAA 356
TTD G+ VK A++SAA
Sbjct: 1904 NTTDKGWTDECVGEPMPSVKKAKDSAA 1930
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++N+INY + ++LE ALT +S ++ Y+R E +GDA L +S ++FL YPQ GQ
Sbjct: 1389 LKNMINYPVQASKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1447
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVR 126
L+ +R +S L + A+ G +++
Sbjct: 1448 LTRMRQQMVSNMVLYQYALSKGLQSYIQ 1475
>gi|87240866|gb|ABD32724.1| Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease
III, bacterial [Medicago truncatula]
Length = 1939
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 121/334 (36%), Positives = 191/334 (57%), Gaps = 19/334 (5%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E +N FK+K LL E++TH+S S + YQRLEF+GDA L ++ ++F +Y L P
Sbjct: 1604 LEGALNIKFKDKGLLIESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFSYTDLPP 1663
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG--- 153
G+L+ LRAA ++ E ARV VKH + +RH ++AL+ ++K+F + V E + +
Sbjct: 1664 GRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKDFVKEVQDELSKPGFNSFG 1723
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DI+ESIA AI++D + +W +F+ LL P+VT E L PV L
Sbjct: 1724 LGDCKAPKVLGDILESIAGAIFLDSGRNTAVVWKVFQPLLHPMVTPETLPM--HPVRELQ 1781
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
+ CQ+ + ++ + R V++DG V +A + QK++A+ AAR AL L +
Sbjct: 1782 ERCQQQAEGLEYRASRAGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEK-- 1839
Query: 273 VNCDVCEIFDDIDEKFEIEA----AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSA 328
+ +I + DEK +Q L+++C ++ WP P Y+ + GP+H K+F A
Sbjct: 1840 ---EESKIQEKNDEKETKNGNQTFTRQTLNDICLRRNWPMPFYRCVSEGGPAHAKRFTFA 1896
Query: 329 VQIATTDGVLF--ITGDEKSRVKDAENSAASMML 360
V++ TTD G+ VK A++SAA ++L
Sbjct: 1897 VRVNTTDKGWTDECVGEAMPSVKKAKDSAAVLLL 1930
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 39 VENIINYNFKNKRL-----LEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQ 93
++N+INY + ++ + EALT +S ++ Y+R E +GDA L +S ++FL +PQ
Sbjct: 1380 LKNMINYPVQASKVSSQLKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKHPQ 1439
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFV 125
GQL+ +R +S L R A+ G ++
Sbjct: 1440 KHEGQLTRMRQQMVSNMVLYRYALSKGLQSYI 1471
>gi|356504203|ref|XP_003520888.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Glycine max]
Length = 1944
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 187/330 (56%), Gaps = 19/330 (5%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E +N F ++ LL E++TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1610 LEGALNMKFNDRGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPP 1669
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG--- 153
G+L+ LRAA ++ E ARVAVKH + +RH ++AL+ ++KEF + V E + +
Sbjct: 1670 GRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQVELSKPGFNSFG 1729
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DIVESIA AI++D D +W +F+ LL P+VT E L PV L
Sbjct: 1730 LGDCKAPKVLGDIVESIAGAIFLDSGRDTTVVWKVFQPLLHPMVTPETLPM--HPVRELQ 1787
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
+ CQ+ + ++ K R V++DG V +A + QK++A+ AAR AL L +
Sbjct: 1788 ERCQQQAEGLEYKASRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEK-- 1845
Query: 273 VNCDVCEIFDDIDEKFEIEA----AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSA 328
+V + + DE + +Q L+++C ++ WP P Y+ + GP+H K+F A
Sbjct: 1846 ---EVGKTQEKNDENGKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFA 1902
Query: 329 VQIATTDGVLF--ITGDEKSRVKDAENSAA 356
V++ TTD G+ VK A++SAA
Sbjct: 1903 VRVNTTDRGWTDECVGEPMPSVKKAKDSAA 1932
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++N+INY ++L ALT +S ++ Y+R E +GDA L +S ++FL YPQ GQ
Sbjct: 1391 LKNMINYPVLASKILG-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1449
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVR 126
L+ +R +S L + A+ G +++
Sbjct: 1450 LTRMRQQMVSNMVLYQYALSKGLQSYIQ 1477
>gi|357512663|ref|XP_003626620.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
gi|355501635|gb|AES82838.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
Length = 1965
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 121/334 (36%), Positives = 191/334 (57%), Gaps = 19/334 (5%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E +N FK+K LL E++TH+S S + YQRLEF+GDA L ++ ++F +Y L P
Sbjct: 1630 LEGALNIKFKDKGLLIESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFSYTDLPP 1689
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG--- 153
G+L+ LRAA ++ E ARV VKH + +RH ++AL+ ++K+F + V E + +
Sbjct: 1690 GRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKDFVKEVQDELSKPGFNSFG 1749
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DI+ESIA AI++D + +W +F+ LL P+VT E L PV L
Sbjct: 1750 LGDCKAPKVLGDILESIAGAIFLDSGRNTAVVWKVFQPLLHPMVTPETLPM--HPVRELQ 1807
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
+ CQ+ + ++ + R V++DG V +A + QK++A+ AAR AL L +
Sbjct: 1808 ERCQQQAEGLEYRASRAGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEK-- 1865
Query: 273 VNCDVCEIFDDIDEKFEIEA----AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSA 328
+ +I + DEK +Q L+++C ++ WP P Y+ + GP+H K+F A
Sbjct: 1866 ---EESKIQEKNDEKETKNGNQTFTRQTLNDICLRRNWPMPFYRCVSEGGPAHAKRFTFA 1922
Query: 329 VQIATTDGVLF--ITGDEKSRVKDAENSAASMML 360
V++ TTD G+ VK A++SAA ++L
Sbjct: 1923 VRVNTTDKGWTDECVGEAMPSVKKAKDSAAVLLL 1956
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++N+INY + ++LE ALT +S ++ Y+R E +GDA L +S ++FL +PQ GQ
Sbjct: 1412 LKNMINYPVQASKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKHPQKHEGQ 1470
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFV 125
L+ +R +S L R A+ G ++
Sbjct: 1471 LTRMRQQMVSNMVLYRYALSKGLQSYI 1497
>gi|125555283|gb|EAZ00889.1| hypothetical protein OsI_22916 [Oryza sativa Indica Group]
Length = 276
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 152/240 (63%), Gaps = 13/240 (5%)
Query: 39 VENIINYNFKNKRLLEEALTHSS----YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQL 94
VE+++ Y F++K L+E+ALTH S Y +Y+RLE++GDA L +S VFL Y QL
Sbjct: 42 VESLLGYEFRDKALVEQALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSREVFLTYGQL 101
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
PG L+ LRAAN+ EKLARVAV HG + F+RH A LD ++ +F E +S + G
Sbjct: 102 QPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMYPIHS--NG 159
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL 214
+ PKVL D+VES+ AIY D +F+ + +W +F+ L +P+++LE L + PV+ LF+
Sbjct: 160 LLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGK--HPVSELFEF 217
Query: 215 CQKNGKQVDI--KHWRKNRKNIASVYVDGSFVASAS-SEQKEIAKLNAAREALEKLAQSM 271
CQK + V I W KN V +DG V A+ +++KEIA+ AA+ AL+KL +++
Sbjct: 218 CQKTRRGVKIVKDEWDKNL--TVEVLIDGEMVGRATYAQKKEIAQNRAAKAALDKLKETL 275
>gi|6715634|gb|AAF26461.1|AC007323_2 T25K16.4 [Arabidopsis thaliana]
Length = 2024
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 125/375 (33%), Positives = 189/375 (50%), Gaps = 49/375 (13%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E + Y FK K LL EA+TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1650 LERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPP 1709
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKV-------------------- 136
G+L+ LRAA ++ E ARVAVKH + ++RH ++AL+ +V
Sbjct: 1710 GRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQVNKIKKQSILFSKSFKCLTVW 1769
Query: 137 -------KEFAEAVSQEDNTAVYG----GSIKAPKVLADIVESIAAAIYVDIDFDLQKLW 185
+EF + V E + + G KAPKVL DIVESIA AI++D D W
Sbjct: 1770 LLFVFQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAW 1829
Query: 186 MIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVA 245
+F+ LL+P+VT E L PV L + CQ+ + ++ K R V++DG V
Sbjct: 1830 KVFQPLLQPMVTPETLPM--HPVRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVG 1887
Query: 246 SASSEQKEIA------------KLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAA 293
A + QK++A K E+ EK + D E + +
Sbjct: 1888 VAQNPQKKMAQKLAARNALAALKEKEIAESKEKHINNGNAGEDQGENENGNKKNGHQPFT 1947
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLF--ITGDEKSRVKDA 351
+Q L+++C +K WP PSY+ K+ GP+H K+F V++ T+D G+ VK A
Sbjct: 1948 RQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKA 2007
Query: 352 ENSAASMMLRALRES 366
++SAA ++L L ++
Sbjct: 2008 KDSAAVLLLELLNKT 2022
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 35/172 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++N+I+Y ++LE ALT +S ++ Y+R E +GDA L +S ++FL YPQ GQ
Sbjct: 1434 LKNLISYPIPTSKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1492
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFV--------RHSAAAL----DDKVKEFAEA---- 142
L+ +R +S L + A+ G ++ R SA + D+ K+ +
Sbjct: 1493 LTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDE 1552
Query: 143 ----VSQEDNTAVYGGSIK--------------APKVLADIVESIAAAIYVD 176
VS+E++ G ++ + K LAD+VE++ YV+
Sbjct: 1553 EQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVE 1604
>gi|302793023|ref|XP_002978277.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii]
gi|300154298|gb|EFJ20934.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii]
Length = 1728
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 118/358 (32%), Positives = 198/358 (55%), Gaps = 30/358 (8%)
Query: 26 SLPSPEMEDAVF-YVENIINYNFKNKRLLEEALTHSSYTDST--SYQRLEFIGDAALGLA 82
S+P M F +E I Y F+ K +L EA++H+S + YQRLEF+GDA L
Sbjct: 1373 SVPDSVMNSIDFEKLELAIGYKFQMKSVLVEAISHASRPSAGVPCYQRLEFVGDAVLDHL 1432
Query: 83 LSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEA 142
++ Y+F Y L PG+L+ LRAA ++ E AR++VKH F+ +RH ++AL+ ++K+F +
Sbjct: 1433 ITRYLFFRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHLHLRHGSSALEAQIKDFVKD 1492
Query: 143 VSQE-DNTAV--YG-GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTL 198
+ E D + +G G KAPKVL DI+ESIA AI++D ++W +F LLEP+VT
Sbjct: 1493 IQSELDKPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLAADEVWKVFERLLEPMVTP 1552
Query: 199 EELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK-- 256
+ L PV L + CQ+ + ++ + R+ V+VDG + A + QK++A+
Sbjct: 1553 DTLPV--HPVRELQERCQQQAEGLEYRASREGSIATVEVFVDGVQIGCAQNTQKKMAQKL 1610
Query: 257 -------LNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKP 309
R++LE+ + V ++ +D F +Q L+++C +++WP P
Sbjct: 1611 AARNALAALKERDSLEEESNK------VTKMENDKANAF----TRQTLNDICLQRQWPMP 1660
Query: 310 SYKIEKDEGPSHDKKFMSAVQIATTDGVLF--ITGDEKSRVKDAENSAASMMLRALRE 365
Y++ + GP+H K+F V++ T + G +K A++SAA ++L L++
Sbjct: 1661 QYRLLSESGPAHAKRFTYTVRVNTRERGWTDECEGQAMPSMKKAKDSAALVLLEVLKQ 1718
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 44/166 (26%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EALT +S ++ SY+R E +GDA L +S +F+ +P+ GQL+ +R +S L
Sbjct: 1176 EALTAASCQETFSYERAELLGDAYLKWVVSRRLFIKHPRKHEGQLTRMRQQTVSNMVLYE 1235
Query: 115 VAVKHGFYKFV--------RHSA-------------AALDDKVKEFAEAVSQE------- 146
A+ ++ R +A A LD++ E +A E
Sbjct: 1236 FAISKSLQSYIQSDRFAPSRWAAPGVPPVFDEDLKDANLDNEAAEVPKANEHEERSTKSS 1295
Query: 147 -------DNTAVYGGS---------IKAPKVLADIVESIAAAIYVD 176
D+T++ G + + K LAD+VE++ YV+
Sbjct: 1296 GEEEVLDDSTSLEDGEAEWDSSSYRVLSSKTLADVVEALIGVYYVE 1341
>gi|379987676|gb|AFD22618.1| dicer-like 1 protein, partial [Nicotiana attenuata]
Length = 1690
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 120/342 (35%), Positives = 179/342 (52%), Gaps = 39/342 (11%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
++ +N +F +K LL EA+TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1354 LQGALNISFNDKGLLLEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPP 1413
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG--- 153
G+L+ LRAA ++ E ARVAVKHG + +RH ++AL+ ++++F V E + +
Sbjct: 1414 GRLTDLRAAAVNNENFARVAVKHGLHLHLRHGSSALEKQIRDFVIEVKNELSKPGFNSFG 1473
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DI ESIA AI++D D +W +F+ LL P+VT E L PV L
Sbjct: 1474 LGDCKAPKVLGDIFESIAGAIFLDSGCDTAVVWKVFQPLLHPMVTPETLPM--HPVRELQ 1531
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
+ CQ+ + ++ K R VYVDG V A + QK K+AQ
Sbjct: 1532 ERCQQQAQGLEYKASRSGNIATVEVYVDGIQVGMAQNPQK------------RKMAQK-- 1577
Query: 273 VNCDVCE-IFDDIDEKFEIEAAK--------------QKLHELCGKKKWPKPSYKIEKDE 317
V C C + K ++ K Q L+++C ++ WP P Y+ +
Sbjct: 1578 VGCQECPCCVEKRGRKPKLRRLKMGRKKKNGNPSYTRQTLNDICLRRNWPMPLYRSVHEG 1637
Query: 318 GPSHDKKFMSAVQIATTDGVLF--ITGDEKSRVKDAENSAAS 357
GP+H K+F V++ T+D G+ VK A++SAAS
Sbjct: 1638 GPAHAKRFTYGVRVNTSDKGWTDECIGEPMPSVKKAKDSAAS 1679
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++++I Y ++LE ALT +S ++ Y+R E +GDA L +S Y+FL YPQ GQ
Sbjct: 1133 LKDMIGYPVPALKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRYLFLKYPQKHEGQ 1191
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVR 126
L+ +R +S L + A+ G +++
Sbjct: 1192 LTRMRQQMVSNMVLYQYALNKGLQSYIQ 1219
>gi|302765743|ref|XP_002966292.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii]
gi|300165712|gb|EFJ32319.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii]
Length = 1730
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 124/353 (35%), Positives = 199/353 (56%), Gaps = 20/353 (5%)
Query: 26 SLPSPEMEDAVF-YVENIINYNFKNKRLLEEALTHSSYTDST--SYQRLEFIGDAALGLA 82
S+P M F +E I Y F+ K +L EA++H+S + YQRLEF+GDA L
Sbjct: 1373 SVPDSVMNSIDFEKLELAIGYKFQMKSVLVEAISHASRPSAGVPCYQRLEFVGDAVLDHL 1432
Query: 83 LSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEA 142
++ Y+F Y L PG+L+ LRAA ++ E AR++VKH F+ +RH ++AL+ ++K+F +
Sbjct: 1433 ITRYLFFRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHLHLRHGSSALEAQIKDFVKD 1492
Query: 143 VSQE-DNTAV--YG-GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTL 198
+ E D + +G G KAPKVL DI+ESIA AI++D ++W +F LLEP+VT
Sbjct: 1493 IQSELDKPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLAADEVWKVFERLLEPMVTP 1552
Query: 199 EELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLN 258
+ L PV L + CQ+ + ++ + R+ V+VDG + A + QK++A+
Sbjct: 1553 DTLPV--HPVRELQERCQQQAEGLEYRASREGSIATVEVFVDGVQIGCAQNTQKKMAQKL 1610
Query: 259 AAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAA----KQKLHELCGKKKWPKPSYKIE 314
AAR AL L + D E + K E E A +Q L+++C +++WP P Y++
Sbjct: 1611 AARNALAALKER-----DSLEEESNKVAKMENEKANAFTRQTLNDICLQRQWPMPQYRLL 1665
Query: 315 KDEGPSHDKKFMSAVQIATTDGVLF--ITGDEKSRVKDAENSAASMMLRALRE 365
+ GP+H K+F V++ T + G +K A++SAA ++L L++
Sbjct: 1666 SESGPAHAKRFTYTVRVNTRERGWTDECEGQAMPSMKKAKDSAALVLLEVLKQ 1718
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 44/166 (26%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EALT +S ++ SY+R E +GDA L +S +F+ +P+ GQL+ +R +S L
Sbjct: 1176 EALTAASCQETFSYERAELLGDAYLKWVVSRRLFIKHPRKHEGQLTRMRQQTVSNMVLYE 1235
Query: 115 VAVKHGFYKFVRHSAAA---------------------LDDKVKEFAEAVSQE------- 146
A+ +++ A LD++ E +A E
Sbjct: 1236 FAISKSLQSYIQSDRFAPSRWAAPGVPPVFDEDLKDSNLDNEAAEVPKASEHEERSTKSS 1295
Query: 147 -------DNTAVYGGS---------IKAPKVLADIVESIAAAIYVD 176
D+T++ G + + K LAD+VE++ YV+
Sbjct: 1296 GEEEVLDDSTSLEDGEAEWDSSSYRVLSSKTLADVVEALIGVYYVE 1341
>gi|357462175|ref|XP_003601369.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
gi|355490417|gb|AES71620.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
Length = 565
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 154/252 (61%), Gaps = 11/252 (4%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
VE I+ Y FKNK LLEEA TH +Y + SY+RLE++GD+ L L ++ F AYP L P
Sbjct: 230 VEAILEYEFKNKLLLEEAFTHGTYGAENGLSYERLEYVGDSVLNLMITKEQFQAYPTLAP 289
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAAN+ TEKLARVA+KHG ++++RH L D+++EF + +++ G I
Sbjct: 290 GHLTRLRAANVDTEKLARVAIKHGLHRYLRHKKPLLGDQIQEFTKGIAE--YPLHSNGLI 347
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
PK LADIVES AI+VD ++ +W +F+ LLEPI+ +Q+ PVT L ++CQ
Sbjct: 348 DVPKSLADIVESTIGAIFVDCGSSVETVWKVFKKLLEPIIDPNTIQR--HPVTELHEVCQ 405
Query: 217 KNGKQVDIKH-WRKNRKNIASVYVDGSFVASAS-SEQKEIAKLNAAREALEKLAQSMPVN 274
K ++ + W++ + V ++ FV S +KEIA AA+ ALE + + + ++
Sbjct: 406 KKSLKLQFRDLWKETMR--IEVLINEEFVGSGVYGSKKEIAHNRAAKNALENMEKILGIS 463
Query: 275 CDVCE-IFDDID 285
E + +D+D
Sbjct: 464 TSTKEDVTEDLD 475
>gi|449453708|ref|XP_004144598.1| PREDICTED: ribonuclease 3-like protein 3-like [Cucumis sativus]
Length = 275
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 98/243 (40%), Positives = 155/243 (63%), Gaps = 8/243 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E I+NY F++KRLLEEA T +SY+ + +S++RLE++GD+ L ++ + + P L P
Sbjct: 37 IEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQYFSNPNLSP 96
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAAN+ TEKLARVA+ HGF++++RH+ A L K++EF ++ E+ G I
Sbjct: 97 GSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKIEEFGRSI--EEYPLHSNGMI 154
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
KAPKVLADIVES A++ D +F + +W IF+ L+EP++TL+ +++ P+T L ++CQ
Sbjct: 155 KAPKVLADIVESTIGAVFADSNF-IDTVWKIFKELMEPLITLKTMKK--HPMTELTEMCQ 211
Query: 217 KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD 276
K +++ + + K I V ++ V S +K IA+ AA+ ALE L P
Sbjct: 212 KRSLKLEFRDRWEETKEI-EVLIEKQVVGKGSYRKKLIAQNRAAKNALENLDTFFPQFNQ 270
Query: 277 VCE 279
C+
Sbjct: 271 PCQ 273
>gi|224064945|ref|XP_002301611.1| predicted protein [Populus trichocarpa]
gi|222843337|gb|EEE80884.1| predicted protein [Populus trichocarpa]
Length = 303
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 152/232 (65%), Gaps = 9/232 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST-SYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
VE I++Y FK+K+LLEEALTH+S++D SY+RLE++GD+ L L + + YP L PG
Sbjct: 57 VEEILHYKFKSKKLLEEALTHASFSDQCFSYERLEYVGDSVLNLLFTKEQYFLYPDLPPG 116
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157
L+ LR+AN+ TEKLARVA+KH ++++RH L+++++EF++A+ D G ++
Sbjct: 117 PLTRLRSANVDTEKLARVAIKHKLHRYLRHKMPLLEEQIREFSQAIL--DYPLHSNGLVE 174
Query: 158 APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQK 217
PK LADIVE+ A+++D +F + +W IF+ LLEPI++ E L + PVT L+++CQK
Sbjct: 175 TPKALADIVEAAIGAVFIDSNFSIDVVWKIFKDLLEPIISQETL--KVHPVTELYEVCQK 232
Query: 218 NGKQVD-IKHWRKNRKNIASVYVDGSFVASAS-SEQKEIAKLNAAREALEKL 267
+V + W++N V++D FV + +KEIA AA+ AL +
Sbjct: 233 RNLKVKFVDLWKENMA--FDVFIDDQFVGRGTYGLKKEIAHNRAAKNALNNI 282
>gi|357118011|ref|XP_003560753.1| PREDICTED: ribonuclease 3-like protein 3-like [Brachypodium
distachyon]
Length = 296
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 106/251 (42%), Positives = 157/251 (62%), Gaps = 16/251 (6%)
Query: 30 PEMEDAVFYVENIINYNFKNKRLLEEALTHSSY------TDSTSYQRLEFIGDAALGLAL 83
P + V VE ++ Y F +K L+ EALTH SY DST Y+RLE++GD L +
Sbjct: 32 PMGPEDVAAVETLLGYEFGDKSLVGEALTHGSYYYPYPPGDST-YERLEYLGDGVLTCLM 90
Query: 84 SNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV 143
S VFL Y L PG L+ LRAAN+ EKLARVAV+HG ++F+RH A LD ++ +F + +
Sbjct: 91 SREVFLTYRSLPPGPLTRLRAANVDKEKLARVAVEHGIHRFLRHKAPQLDGQIDDFIKEL 150
Query: 144 SQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ + G + APKVL+DIVES+ AIY+D +F+ + +W +FR L +P+++LE L +
Sbjct: 151 CKYKYHS--NGLLDAPKVLSDIVESLIGAIYLDSNFNQEVVWRVFRNLADPLISLETLGK 208
Query: 204 QPQPVTLLFKLCQKN--GKQVDIKHWRKNRKNIASVYVDGSFVASAS-SEQKEIAKLNAA 260
PV+ L + CQK G Q W K+ K V VDG + +A+ +++KEIA+ AA
Sbjct: 209 --HPVSELLEFCQKTRRGLQFVKDGWDKHLK--VDVLVDGELLGTATYAQKKEIAQNRAA 264
Query: 261 REALEKLAQSM 271
+ AL+KL +++
Sbjct: 265 KAALDKLKETL 275
>gi|449493233|ref|XP_004159229.1| PREDICTED: ribonuclease 3-like protein 3-like [Cucumis sativus]
Length = 275
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 154/243 (63%), Gaps = 8/243 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E I+NY F++KRLLEEA T +SY+ + +S++RLE++GD+ L ++ + + P L P
Sbjct: 37 IEAILNYEFRDKRLLEEAFTDASYSPENCSSFERLEYVGDSVLNFLITREQYFSNPNLSP 96
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAAN+ TEKLARVA+ HGF++++RH+ A L K++EF ++ E+ G I
Sbjct: 97 GSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKIEEFGRSI--EEYPLHSNGMI 154
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
KAPKVLADIVES A++ D + + +W IF+ L+EP++TL+ +++ P+T L ++CQ
Sbjct: 155 KAPKVLADIVESTIGAVFADSN-SIDTVWKIFKELMEPLITLKTMKK--HPMTELTEMCQ 211
Query: 217 KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD 276
K +++ + + K I V ++ V S +K IA+ AA+ ALE L P
Sbjct: 212 KRSLKLEFRDRWEETKEI-EVLIEKQVVGKGSYRKKLIAQNRAAKNALENLDTFFPQFNQ 270
Query: 277 VCE 279
C+
Sbjct: 271 PCQ 273
>gi|242078881|ref|XP_002444209.1| hypothetical protein SORBIDRAFT_07g015020 [Sorghum bicolor]
gi|241940559|gb|EES13704.1| hypothetical protein SORBIDRAFT_07g015020 [Sorghum bicolor]
Length = 291
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/272 (41%), Positives = 158/272 (58%), Gaps = 20/272 (7%)
Query: 27 LPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSS----YTDSTSYQRLEFIGDAALGLA 82
+P ED V +E ++ Y F +K L+E ALTH S Y +Y+RLE++GD L
Sbjct: 19 VPPMSAED-VAAIEAVLGYEFADKSLVELALTHGSFYFPYRPGDTYERLEYLGDGVLTCL 77
Query: 83 LSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEA 142
+S VF Y L PG L+ LRAAN+ TEKLARVAV G ++F+RH A L D++ F E
Sbjct: 78 MSREVFRNYRTLPPGPLTRLRAANVDTEKLARVAVDRGLHRFLRHKAPKLQDQICLFIEE 137
Query: 143 VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQ 202
+ + + G + PKVL DIVES+ AIY D DF+ +++W +FR L +P++ LE L
Sbjct: 138 MRKYPVHS--NGLLDPPKVLCDIVESLIGAIYWDSDFNQEEVWRVFRTLADPLIGLETLG 195
Query: 203 QQPQPVTLLFKLCQKNGKQVDI--KHWRKNRKNIASVYVDGSFVASAS-SEQKEIAKLNA 259
+ PVT LF+ CQK + V W K+ K V +DG VASA+ +KEIA+ A
Sbjct: 196 K--HPVTELFEFCQKTRRGVKFVKDEWDKSLK--VEVLIDGELVASATYGPKKEIAQNRA 251
Query: 260 AREALEKL------AQSMPVNCDVCEIFDDID 285
A+ AL+KL QS + DV + D+++
Sbjct: 252 AKAALDKLKETLGQTQSESASADVSDALDELE 283
>gi|195624966|gb|ACG34313.1| endoribonuclease Dicer [Zea mays]
Length = 329
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/263 (41%), Positives = 154/263 (58%), Gaps = 19/263 (7%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSY----TDSTSYQRLEFIGDAALGLALSNYVFLAY 91
V +E ++ Y F +K L+E ALTH S+ +Y+RLE++GD L +S VF Y
Sbjct: 48 VTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSREVFRTY 107
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV 151
L PG L+ LRAAN+ TEKLARVAV G Y+F+RH A L D++ F E + + +
Sbjct: 108 RTLQPGPLTRLRAANVDTEKLARVAVHRGLYRFLRHKAPKLQDQICFFIEEMRKYPVHS- 166
Query: 152 YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLL 211
G + PKVL DIVES+ AIY+D +FD +++W +FR L +P++ LE L + PV+ L
Sbjct: 167 -NGLLDPPKVLCDIVESLIGAIYLDSNFDQEEVWRVFRTLADPLIGLETLGK--HPVSEL 223
Query: 212 FKLCQKNGKQVDI--KHWRKNRKNIASVYVDGSFVASA-SSEQKEIAKLNAAREALEKL- 267
F+ CQK + V W K+ K V +DG V SA +KEIA+ AA++AL+KL
Sbjct: 224 FEFCQKTHRGVKFLKDEWDKSLK--VQVLIDGEVVGSAIYGPKKEIAQNRAAKDALDKLK 281
Query: 268 -----AQSMPVNCDVCEIFDDID 285
QS + DV E D++D
Sbjct: 282 DTHGHTQSESASVDVSEALDELD 304
>gi|359485630|ref|XP_002270948.2| PREDICTED: ribonuclease 3-like protein 3-like [Vitis vinifera]
gi|297739192|emb|CBI28843.3| unnamed protein product [Vitis vinifera]
Length = 287
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 146/231 (63%), Gaps = 7/231 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSS-YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
VE I+ Y+F NKRLLEEA TH+S + SY+RLEF+GD+ L L ++ F YP L PG
Sbjct: 33 VEQILGYSFTNKRLLEEAYTHASCQKNQFSYERLEFMGDSVLSLLITKEQFFLYPDLQPG 92
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157
+L+ LR+AN+ EKLARVA+KHG ++F+RH ++ ++ EFAEA+ + + G I+
Sbjct: 93 RLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHS--NGQIE 150
Query: 158 APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQK 217
PKVLAD+VES A++VD + + +W +F+GLLEP++ E L+ PVT L + CQK
Sbjct: 151 VPKVLADVVESTIGAVFVDCNCSVDTVWKVFKGLLEPMIVPETLKV--HPVTELNERCQK 208
Query: 218 NGKQVDIKHWRKNRKNIASVYVDGSFVASASSE-QKEIAKLNAAREALEKL 267
G +++ K + R +I Y++ F +K+IA AA+ AL +
Sbjct: 209 RGLKLEFKDSWQRRGDI-DFYIEDYFAGRGEYPLRKDIALNRAAKAALNNI 258
>gi|226528435|ref|NP_001141713.1| uncharacterized protein LOC100273842 [Zea mays]
gi|194705648|gb|ACF86908.1| unknown [Zea mays]
gi|414870636|tpg|DAA49193.1| TPA: endoribonuclease Dicer [Zea mays]
Length = 329
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 108/263 (41%), Positives = 154/263 (58%), Gaps = 19/263 (7%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSY----TDSTSYQRLEFIGDAALGLALSNYVFLAY 91
V +E ++ Y F +K L+E ALTH S+ +Y+RLE++GD L +S VF Y
Sbjct: 48 VTAIEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSREVFRTY 107
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV 151
L PG L+ LRAAN+ TEKLARVAV G ++F+RH A L D++ F E + + +
Sbjct: 108 RTLQPGPLTRLRAANVDTEKLARVAVHRGLHRFLRHKAPKLQDQICFFIEEMRKYPVHS- 166
Query: 152 YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLL 211
G + PKVL DIVES+ AIY+D +FD +++W +FR L +P++ LE L + PV+ L
Sbjct: 167 -NGLLDPPKVLCDIVESLIGAIYLDSNFDQEEVWRVFRTLADPLIGLETLGK--HPVSEL 223
Query: 212 FKLCQKNGKQVDI--KHWRKNRKNIASVYVDGSFVASA-SSEQKEIAKLNAAREALEKL- 267
F+ CQK + V W K+ K V +DG V SA +KEIA+ AA++AL+KL
Sbjct: 224 FEFCQKTHRGVKFLKDEWDKSLK--VQVLIDGEVVGSAIYGPKKEIAQNRAAKDALDKLK 281
Query: 268 -----AQSMPVNCDVCEIFDDID 285
QS + DV E D++D
Sbjct: 282 DTHGHTQSESASVDVSEALDELD 304
>gi|224068194|ref|XP_002302679.1| dicer-like protein [Populus trichocarpa]
gi|222844405|gb|EEE81952.1| dicer-like protein [Populus trichocarpa]
Length = 1817
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 164/289 (56%), Gaps = 19/289 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E ++ F ++ LL EA+TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1526 LEGALDIKFNDRGLLIEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPP 1585
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG--- 153
G+L+ LRAA ++ E ARVAVKH + +RH ++AL+ ++++F V E V+
Sbjct: 1586 GRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALEKQIRDFVREVQDELLKPVFNSFG 1645
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DIVESIA AI++D D +W +F+ LL P+VT E L PV L
Sbjct: 1646 LGDCKAPKVLGDIVESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPM--HPVRELQ 1703
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
+ CQ+ + ++ K R V++DG V A + QK++A+ AAR AL L +
Sbjct: 1704 ERCQQQAEGLEYKATRSGNLATVEVFIDGVQVGVAQNPQKKMAQKLAARNALVVLKEK-- 1761
Query: 273 VNCDVCEIFDDIDEKFEIEA------AKQKLHELCGKKKWPKPSYKIEK 315
+ E + DE + + +Q L+++C ++ WP PSY++++
Sbjct: 1762 ---ETAEAKEKSDENGKKKRNGNQTFTRQTLNDICLRRNWPMPSYRMDR 1807
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+++IINY ++LE ALT +S ++ Y+R E +GDA L +S ++FL YPQ GQ
Sbjct: 1306 LKDIINYPVPASKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1364
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVR 126
L+ +R +S L + A+ G +++
Sbjct: 1365 LTRMRQQMVSNMVLYQYALNKGLQSYIQ 1392
>gi|147770295|emb|CAN62473.1| hypothetical protein VITISV_005321 [Vitis vinifera]
Length = 287
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/231 (41%), Positives = 145/231 (62%), Gaps = 7/231 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSS-YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
VE I+ Y+F NKRLLEEA TH+S + SY+RLEF+GD+ L L ++ F YP L PG
Sbjct: 33 VEQILGYSFTNKRLLEEAYTHASCQKNQFSYERLEFMGDSVLSLLITKEQFFLYPDLQPG 92
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157
+L+ LR+AN+ EKLARVA+KHG ++F+RH ++ ++ EFAEA+ + + G I+
Sbjct: 93 RLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHS--NGQIE 150
Query: 158 APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQK 217
PKVLAD+VES A++VD + + + +F+GLLEP++ E L+ PVT L + CQK
Sbjct: 151 VPKVLADVVESTIGAVFVDCNCSVDTVXKVFKGLLEPMIVPETLKV--HPVTELNERCQK 208
Query: 218 NGKQVDIKHWRKNRKNIASVYVDGSFVASASSE-QKEIAKLNAAREALEKL 267
G +++ K + R +I Y++ F +K+IA AA+ AL +
Sbjct: 209 RGLKLEFKDSWQRRGDI-DFYIEDYFAGRGEYPLRKDIALNRAAKAALNNI 258
>gi|357462179|ref|XP_003601371.1| Ribonuclease 3-like protein [Medicago truncatula]
gi|355490419|gb|AES71622.1| Ribonuclease 3-like protein [Medicago truncatula]
Length = 322
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 155/257 (60%), Gaps = 21/257 (8%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
++ VE I+ Y FKNK+LLEEALTH++Y Y+RLE++GDA L L ++ F++YP L
Sbjct: 69 LYEVEEILGYEFKNKQLLEEALTHTTYGAENDYERLEYVGDAVLNLLMAREQFVSYPNLK 128
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKV---------KEFAEAVSQE 146
PG L+ LR+ N+ +EKLARVA+ HG +++RH L ++V + F +A+ E
Sbjct: 129 PGILTQLRSKNVDSEKLARVAINHGLDRYLRHKKPQLGEQVSLGIGIGQIEAFTKAI--E 186
Query: 147 DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQ 206
D G I PK LAD+VES A+++D D L+ +W +FR LLEPI+ +++
Sbjct: 187 DYPIHSNGHIHVPKDLADMVESTIGALFIDCDSSLEIVWKVFRKLLEPIIEPNTVEK--H 244
Query: 207 PVTLLFKLCQK---NGKQVDIKHWRKNRKNIASVYVDGSFVASAS-SEQKEIAKLNAARE 262
PV+ L ++CQK N + VD+ W K+ NI V+++ FV + +K+IA AA+
Sbjct: 245 PVSELQEVCQKKKLNLQFVDL--WEKSM-NI-DVFINEKFVGRGTYGSKKDIAHYRAAKN 300
Query: 263 ALEKLAQSMPVNCDVCE 279
AL+ + + + + + E
Sbjct: 301 ALDNIERVLSGSTSIVE 317
>gi|357462157|ref|XP_003601360.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
gi|355490408|gb|AES71611.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
Length = 783
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 142/252 (56%), Gaps = 14/252 (5%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
VE I+ Y FKN LLEEA TH +Y + SY+RLE+IGD+ L L ++ F AYP L P
Sbjct: 447 VEAILEYEFKNILLLEEAFTHCTYGAENGLSYERLEYIGDSVLNLMITTEQFHAYPTLAP 506
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAAN+ TEKLARVA+K+G +++VRH L D+++ F + V + + G I
Sbjct: 507 GHLTRLRAANVDTEKLARVAIKYGLHRYVRHKKPLLGDEIQAFIKEVVEYPLHS--NGLI 564
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
PK+LADIVES AI+VD ++ +W F+ LL P++ +Q+ P L + CQ
Sbjct: 565 DVPKILADIVESTIGAIFVDCGSSIETVWKFFKKLLVPVIDPHTIQRHPS--AELNEFCQ 622
Query: 217 KNGKQVDIKH-WRKNRKNIASVYVDGSFVASA-SSEQKEIAKLNAAREALE----KLAQS 270
K G ++ + W+ + I V + V S +KEIA AA+ ALE K S
Sbjct: 623 KRGLKLQFRDLWKVSE--IVEVLISEELVGSGKCGSKKEIAHNRAAKNALEYMKRKFGIS 680
Query: 271 MPVNCDVCEIFD 282
D E FD
Sbjct: 681 TSTRDDATEDFD 692
>gi|242059623|ref|XP_002458957.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor]
gi|241930932|gb|EES04077.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor]
Length = 1651
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 123/404 (30%), Positives = 191/404 (47%), Gaps = 75/404 (18%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS---YQRLEFIGDAALGLALSNYVFLA 90
D V ++E + Y F+ K LL EALTH S +S + YQRLEF+GDA L + ++ ++FL+
Sbjct: 1240 DVVEFLEAKLGYTFQVKGLLIEALTHPSQQESGATYCYQRLEFLGDAVLDILITRHLFLS 1299
Query: 91 YPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA---EAVSQED 147
+ D G+L+ LR+A+++ E A+VAVKH ++F++HS+ L D++ E+ E S +
Sbjct: 1300 HKDTDEGELTDLRSASVNNENFAQVAVKHNLHQFLQHSSGFLQDQITEYVNSLEGSSMDR 1359
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP 207
+ + G + PKVL DIVESIA AI +D DL +W +F+ LL PIVT E L+ P
Sbjct: 1360 TSLLSSGPSRGPKVLGDIVESIAGAILIDSKLDLDLVWRVFKPLLSPIVTPENLEL--PP 1417
Query: 208 VTLLFKLCQKNGKQVDIKHWRKNRKNIA---SVYVDGSFVASASSEQKEIAKLNAAREAL 264
L + C KNG + IK + K A D V + K AK +AA L
Sbjct: 1418 FRELNEWCDKNGYFIGIKCENRGDKTTAILSLQLKDLLLVRQGCGKNKIDAKAHAASLLL 1477
Query: 265 EKLAQS---MPVNCDVCEIFD-------------DIDEKFEIEAAKQK------------ 296
L + +P N E F+ D+ + + +QK
Sbjct: 1478 RDLEEKGLIIPKNASRVEQFEKNSGTRNHCNNLVDVMDTQNVAPPRQKELPVSSTAPGSV 1537
Query: 297 -------------------LHELCGKKKWPKPSYKIEKDEGPS----------------H 321
L+E C K +WP P ++ K E +
Sbjct: 1538 LDKPLVVKVKLSKGGPRVSLYESCKKLQWPMPMFEFVKVEPKNISVCSSSGDSSQKVAPQ 1597
Query: 322 DKKFMSAVQIATTDG-VLFITGDEKSRVKDAENSAASMMLRALR 364
F S + + +G ++ +TGD ++ K +++SAA +ML L+
Sbjct: 1598 GYAFASTITLHIPNGDIISLTGDGRADKKSSQDSAALLMLYELQ 1641
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 29/173 (16%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EA+T + S +RLE +GD+ L A+S ++F+ + GQLS R I L R
Sbjct: 1054 EAITTLRCCEDFSMERLELLGDSVLKYAVSAHLFMTFLNKHEGQLSSRRQETICNATLYR 1113
Query: 115 VAVKHGFYKFVRHSA------------------AALDDKVKEFAEAVSQEDNTAVY---- 152
+ + ++R +A K + E + + D+ ++
Sbjct: 1114 LGTERRIQGYIRDAAFDPRRWLAPGQLSSRPCPCECPVKSEVITEDIHRIDDKSIIIGKA 1173
Query: 153 ---GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQ 202
G K ++D VE+I A YV + L+ + + + L I TLEE Q
Sbjct: 1174 CDKGHRWICSKTISDCVEAIIGAYYV--EGGLKAAFAVLKWL--QIETLEEEQ 1222
>gi|302819693|ref|XP_002991516.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii]
gi|300140718|gb|EFJ07438.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii]
Length = 1719
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 153/261 (58%), Gaps = 7/261 (2%)
Query: 15 DYRLLKEAMLTSLPS---PEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDST-SYQR 70
D LL A SLP+ ++ ++ +E+ + Y F+N+ LL EA+TH+S + YQR
Sbjct: 1437 DIGLLASARQASLPAESFQHLQASLESLEHKLQYKFQNRSLLVEAITHASQPNCLLCYQR 1496
Query: 71 LEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAA 130
LEF+GD L +S ++F +P L PG L+ LR+A ++ + AR+ ++HG ++ ++H +
Sbjct: 1497 LEFLGDGVLDFLVSRHLFETHPGLPPGTLTDLRSAAVNNKWFARLVLRHGLHQHLQHGSV 1556
Query: 131 ALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRG 190
LD ++++F + V ++ + + + + APKVL D++ESI AI+VD +FDL+KLW +
Sbjct: 1557 ELDCEIRKFVQNVKEKPDASCF-EDLSAPKVLGDLLESITGAIFVDTNFDLEKLWRVVLP 1615
Query: 191 LLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSE 250
LL P+VT L+ PV +L +LC + G +V + + + S V ++ +
Sbjct: 1616 LLSPLVTPATLRF--HPVRILMELCARKGMKVSFFRTEATTTEVRVTFGEESLVETSQEK 1673
Query: 251 QKEIAKLNAAREALEKLAQSM 271
++ AK++AA + L L + +
Sbjct: 1674 PRKSAKIDAALKMLASLQEKV 1694
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 31/158 (19%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EA+T + SY+ LE +GD+ L ++ +FL Y + GQLS R+ L +
Sbjct: 1281 EAITSKKCHEEFSYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRSRATCNAALHQ 1340
Query: 115 VAVKHGFYKFVRHSA------------AALDDKVKEFAEAVSQEDN---TAVYGGSIKAP 159
+A G +++R + K + + E+N + G
Sbjct: 1341 LAKSSGIAEYIRDEEFNPSNWTGPGMLTSDSSKCRHQQGSYENEENYFSSCANGHRGIRR 1400
Query: 160 KVLADIVESIAAA----------------IYVDIDFDL 181
K LAD+VE++ A + +DI+FD+
Sbjct: 1401 KALADVVEALIGAYLATSGPPSAMELMKQLGIDIEFDI 1438
>gi|357129053|ref|XP_003566182.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Brachypodium
distachyon]
Length = 1806
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 126/409 (30%), Positives = 202/409 (49%), Gaps = 63/409 (15%)
Query: 18 LLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFI 74
+L +M T LP ++ +A+ + Y F K LL EALTH S+ +S SYQRLEF+
Sbjct: 1397 ILSASMQTYLPKIDLTEALGAK---LGYAFSVKGLLLEALTHPSHQESEERYSYQRLEFL 1453
Query: 75 GDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDD 134
GDAAL + L+ ++F ++ D G+L+ LR+A+++ E A+VAVKH F+ F++HS+ L D
Sbjct: 1454 GDAALDILLTWHLFNSHKDTDEGELTDLRSASVNNENFAKVAVKHKFHHFLQHSSEILLD 1513
Query: 135 KVKEFAEAV---SQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGL 191
++ E+A ++ S ++ ++ PKVL DIVESIA AI +D DL +W +F+ L
Sbjct: 1514 QITEYANSLENSSMDEINLSSDAPLRGPKVLGDIVESIAGAILIDTKLDLDVVWGVFKPL 1573
Query: 192 LEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNR-KNIASVYV-DGSFVASASS 249
L PIVT E L+ P L + C +NG + IK + + I V + D V
Sbjct: 1574 LSPIVTPENLEL--PPFRELLEWCNRNGYFLGIKCTDGEKLQAILDVQLKDMLVVRRGFG 1631
Query: 250 EQKEIAKLNAAREALEKLAQSMPV----------------NCDVCE-IFDDIDEKFEIEA 292
+ K+ AK +AA L+ L + + + + C +FD +D + A
Sbjct: 1632 KNKKDAKAHAASMLLKDLEEKGLIISKNAIRMEQFEKQWGSANHCHNMFDAVDTQVLTPA 1691
Query: 293 AKQK--------------------LHELCGKKKWPKPSYKIEKDEGPSHDKKFMSA---- 328
++ L+ELC K +WP P + K + + M A
Sbjct: 1692 RGKEPLDKPVHLAVKTSKGGPRIALYELCKKLQWPAPKFVSVKTQPSAAGGSSMKATTQE 1751
Query: 329 --------VQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTYL 369
+ + +D V+ + GD + K +++SAA +ML L+ L
Sbjct: 1752 FSFASNITLHVPNSD-VISLRGDGFADKKSSQDSAALLMLHELQRQGRL 1799
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 23 MLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLA 82
M T + + ++ V Y NI ++ L+ EA+T ++ S +RLE +GD+ L A
Sbjct: 1196 METLMLASQLRSEVAYDSNISSF------LILEAITTLRCSEDFSMERLELLGDSVLKYA 1249
Query: 83 LSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSA 129
+S ++FL +P GQLS R IS L R+ ++H ++R +A
Sbjct: 1250 VSCHLFLKFPNKHEGQLSSSRTDIISNAALYRLGIEHKIQGYIRDAA 1296
>gi|414879098|tpg|DAA56229.1| TPA: hypothetical protein ZEAMMB73_255524 [Zea mays]
Length = 595
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 122/402 (30%), Positives = 193/402 (48%), Gaps = 73/402 (18%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS---YQRLEFIGDAALGLALSNYVFLA 90
D V +E + Y F+ K LL EALTHSS +S + YQRLEF+GDA L + ++ ++FL+
Sbjct: 186 DVVELLEAKLGYTFQMKGLLIEALTHSSQQESGATYCYQRLEFLGDAVLDILITRHLFLS 245
Query: 91 YPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA---EAVSQED 147
+ D G+L+ LR+A+++ E A+VAVKH ++F++HS+ L D++ E+ E+ S +
Sbjct: 246 HKDTDEGELTDLRSASVNNENFAQVAVKHNLHQFLQHSSGFLQDQITEYVNSLESSSMDR 305
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP 207
+ + G + PKVL DIVESIA AI +D DL +W +F+ LL PIVT E L + P+
Sbjct: 306 ASLLSSGPCRGPKVLGDIVESIAGAILIDSKLDLDLVWRVFKPLLSPIVTPENL-ELPR- 363
Query: 208 VTLLFKLCQKNGKQVDIKHWRKN-----------------RKNIASVYVD-----GSFVA 245
L + KNG + IK + R+ VD S +
Sbjct: 364 FRELNEWSDKNGYFIGIKCENRGDSTMAILNLQLKDLLLVRQGCGKNKVDAKAHAASLLL 423
Query: 246 SASSEQKEIAKLNAAR-EALEKLAQSMPVNCDVCEIFDD--------------------- 283
E+ I NA+R E LEK + ++ +V ++ D
Sbjct: 424 RDLEEKGLIIPRNASRVEQLEKNSGTVKHCNNVLDVMDTQNVAPPRQKEVAVLSTTTPGS 483
Query: 284 -------IDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKK------------ 324
+ K + L+E C K +WP P+++ K E
Sbjct: 484 VLDKPLVVKVKLSKGGPRISLYESCKKLQWPMPTFEFVKVEPSVCSSSCGSSQKVAPQGF 543
Query: 325 -FMSAVQIATTDG-VLFITGDEKSRVKDAENSAASMMLRALR 364
F S + + +G V+ +TGD ++ K +++SAA +ML L+
Sbjct: 544 AFASTITLHIPNGDVISLTGDGRADKKSSQDSAALLMLYELQ 585
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
S +RLE +GD+ L A+S ++F+ + GQLS R I L R+ ++ ++R
Sbjct: 11 SMERLELLGDSVLKYAVSAHLFMTFLNKHEGQLSSRRQETICNATLYRLGIERRIQGYIR 70
Query: 127 HSA 129
+A
Sbjct: 71 DAA 73
>gi|330370549|gb|AEC12444.1| ribonuclease III family protein DCL3 [Gossypium hirsutum]
Length = 1655
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 112/170 (65%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+ +E+ + YNF K L+EALTH S +S YQRLEF+GD+ L L ++ Y++ + +D
Sbjct: 1260 IHMIESKVGYNFSVKFFLQEALTHESLHESYCYQRLEFLGDSVLDLLITQYLYNHHTNID 1319
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
PG+L+ LR+A+++ E A+VAV+H +K ++H + L +++ E+ ++ ++ DNT S
Sbjct: 1320 PGELTDLRSASVNNENFAQVAVRHDLHKHLQHCSTLLSNQISEYVQSFTESDNTTRLDPS 1379
Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQP 205
IK PK L D+VESI AI +D + +L K+W I LL PIVT ++L+ P
Sbjct: 1380 IKGPKALGDLVESIVGAILIDTNLNLDKVWRIVEPLLSPIVTPDKLELPP 1429
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
++ EALT +S S +RLE +GD+ L A+S ++FL YP GQLS R+ +
Sbjct: 1068 MILEALTTLRCCESFSMERLELLGDSVLKYAVSCHLFLRYPNKHEGQLSARRSLAVCNST 1127
Query: 112 LARVAVKHGFYKFVRHSA 129
L ++ H ++R SA
Sbjct: 1128 LHKLGTDHKIQGYIRDSA 1145
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 292 AAKQKLHELCGKKKWPKPSYK---------IEKDEGPSHDKKFMSAVQ--IATTDG--VL 338
+ L ELC K WP PS K +E EGP K F+S V I G ++
Sbjct: 1559 GPRTTLFELCKKLLWPMPSIKATEHKSSAPMEIGEGPERKKGFISFVSKIILNVPGYDII 1618
Query: 339 FITGDEKSRVKDAENSAASMMLRALRE 365
TGD K+ K + +SAA ML L +
Sbjct: 1619 ECTGDAKADKKSSSDSAALFMLYELEQ 1645
>gi|224141703|ref|XP_002324204.1| dicer-like protein [Populus trichocarpa]
gi|222865638|gb|EEF02769.1| dicer-like protein [Populus trichocarpa]
Length = 1492
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 113/378 (29%), Positives = 185/378 (48%), Gaps = 49/378 (12%)
Query: 33 EDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFL 89
ED + +E+ + Y F K +L+EA+TH+S + + YQRLEF+GD+ L L ++ +++
Sbjct: 1119 EDEIKSLESKLGYTFGVKFVLQEAMTHASIQEQGVTYCYQRLEFLGDSVLDLLITWHLYQ 1178
Query: 90 AYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNT 149
++ +DPG+L+ LR+A+++ + A+VAVK Y + H + L ++ E+ + + D
Sbjct: 1179 SHTDVDPGELTDLRSASVNNDNFAQVAVKQNLYTHLLHCSTLLQSQITEYVNSFHESDQ- 1237
Query: 150 AVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVT 209
KAPK L D++ESIA A+ +D F+L +W IF+ LL PIVT E+L+ P+
Sbjct: 1238 -----GTKAPKALGDLIESIAGALLIDTKFNLDGVWRIFKPLLSPIVTPEKLEL--PPLR 1290
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYV--DGSFVASASSEQ-KEIAKLNAAREALEK 266
L +LC G V K +K A ++V D ++ E+ ++ AK AA L+K
Sbjct: 1291 ELVELCDSIGVFVKEKCTKKAEMVHAQLWVQLDNELLSGEGYEKNRKAAKGKAASCLLKK 1350
Query: 267 LAQSMPVNCD---VCEIFDDIDEKFEIE-------------------AAKQKLHELCGKK 304
L NC+ C + + I +E + L++LC K
Sbjct: 1351 LQVCNSGNCNHAFFCFLMNSIVPSNIVEYLAKSPPFAVIESINKKKGGPRTSLYDLCKKV 1410
Query: 305 KWPKPSY---------KIEKDEGPSHDKKFMSAVQIATTD----GVLFITGDEKSRVKDA 351
+W P++ IE EGP F S V + GV+ G+ + K +
Sbjct: 1411 QWTMPTFDTTETKSRTAIEFGEGPDKRTGFNSYVSKIIMNIPSYGVVECAGEASADKKTS 1470
Query: 352 ENSAASMMLRALRESTYL 369
+SAA ML L + L
Sbjct: 1471 YDSAALAMLNELEKRGQL 1488
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ EA+T +S S +RLE +GD+ L A+S ++FL YP GQLS R+ +
Sbjct: 928 LILEAITTLRCCESFSMERLELLGDSVLKYAVSCHLFLKYPNKHEGQLSSWRSGAVCNST 987
Query: 112 LARVAVKHGFYKFVRHSA 129
L ++ ++ SA
Sbjct: 988 LHKLGTDCKVQGYILDSA 1005
>gi|302755618|ref|XP_002961233.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii]
gi|300172172|gb|EFJ38772.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii]
Length = 1291
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 119/196 (60%), Gaps = 12/196 (6%)
Query: 35 AVFYVENIINYNFKNKRLLEEALTHSSYTDST-SYQRLEFIGDAALGLALSNYVFLAYPQ 93
A+ +E + Y F+NK LL EA+TH+S D+ YQRLEFIGDA L ++ ++F ++P
Sbjct: 1043 ALLSLEKELCYTFQNKALLLEAITHASTPDTVFCYQRLEFIGDAVLDFLVTRHLFTSHPG 1102
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
L PG LS LR+A+++ + LARVAVKH + ++RH +A L K+ F + + ++ +V
Sbjct: 1103 LSPGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGSAELRAKITSFLDVLDRDPECSVMF 1162
Query: 154 G--SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLL 211
G ++ PK LADIVES+A AI VD FD +KLW++ + LL P VT P TL
Sbjct: 1163 GFKALSGPKALADIVESVAGAILVDSGFDFEKLWVVLKRLLSPFVT---------PATLS 1213
Query: 212 FKLCQKNGKQVDIKHW 227
F ++ + K W
Sbjct: 1214 FHPVREFHELCSYKSW 1229
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EA T D SY+ LE +GD+ L A++ ++L + + G+LS R+ I L +
Sbjct: 853 EARTSLRCQDGFSYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELSDRRSHAICNSTLRK 912
Query: 115 VAVKHGFYKFVR 126
+AV +VR
Sbjct: 913 LAVAQDLPMYVR 924
>gi|302772092|ref|XP_002969464.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii]
gi|300162940|gb|EFJ29552.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii]
Length = 1255
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/196 (41%), Positives = 119/196 (60%), Gaps = 12/196 (6%)
Query: 35 AVFYVENIINYNFKNKRLLEEALTHSSYTDST-SYQRLEFIGDAALGLALSNYVFLAYPQ 93
A+ +E + Y F+NK LL EA+TH+S D+ YQRLEFIGDA L ++ ++F ++P
Sbjct: 1007 ALLSLEKELCYTFQNKALLLEAITHASTPDTVFCYQRLEFIGDAVLDFLVTRHLFTSHPG 1066
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
L PG LS LR+A+++ + LARVAVKH + ++RH +A L K+ F + + ++ +V
Sbjct: 1067 LSPGLLSDLRSASVNNDCLARVAVKHRLHSYLRHGSAELRAKINSFLDVLDRDPECSVMF 1126
Query: 154 G--SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLL 211
G ++ PK LADIVES+A AI VD FD +KLW++ + LL P VT P TL
Sbjct: 1127 GFKALSGPKALADIVESVAGAILVDSGFDFEKLWVVLKRLLSPFVT---------PATLS 1177
Query: 212 FKLCQKNGKQVDIKHW 227
F ++ + K W
Sbjct: 1178 FHPVREFHELCSYKSW 1193
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EA T D SY+ LE +GD+ L A++ ++L + + G+LS R+ I L +
Sbjct: 817 EARTSLRCQDGFSYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELSDRRSHAICNSTLRK 876
Query: 115 VAVKHGFYKFVR 126
+AV +VR
Sbjct: 877 LAVAQDLPMYVR 888
>gi|240255863|ref|NP_680697.4| protein RNAse II-like 1 [Arabidopsis thaliana]
gi|332658200|gb|AEE83600.1| protein RNAse II-like 1 [Arabidopsis thaliana]
Length = 264
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 138/235 (58%), Gaps = 11/235 (4%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD--STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E I+NY FK+K LL +A T +SY D S SY+ LE +GD+ L + + YP+ P
Sbjct: 32 LEKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLYPKEAP 91
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRA N+ TEKLARVAV H Y ++RH L++++ EF EA+ E G +
Sbjct: 92 GPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAM--EKYPLHSNGLL 149
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
K PKVLADIVES AI++D + + +W + + LLEPI+ L++++ P+T L ++CQ
Sbjct: 150 KVPKVLADIVESTIGAIFMDCN-STETVWKVIKPLLEPIIHLDKMKS--HPMTELNEMCQ 206
Query: 217 K-NGKQVDIKHWRKNRKNIASVYVDGSFVASASSE-QKEIAKLNAAREALEKLAQ 269
K N K W +N+ +++ FV +KE A+ AA+ A++ A+
Sbjct: 207 KRNLKLTSKDTWEENQ--TYCFHIEDKFVGCGHHPVKKETARNFAAKNAIDNFAK 259
>gi|115441737|ref|NP_001045148.1| Os01g0909200 [Oryza sativa Japonica Group]
gi|75321191|sp|Q5N870.1|DCL3A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3a; AltName:
Full=Dicer-like protein 3a; Short=OsDCL3a
gi|56785369|dbj|BAD82327.1| putative Endoribonuclease Dicer homolog [Oryza sativa Japonica Group]
gi|113534679|dbj|BAF07062.1| Os01g0909200 [Oryza sativa Japonica Group]
Length = 1651
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 133/427 (31%), Positives = 202/427 (47%), Gaps = 81/427 (18%)
Query: 18 LLKEAMLTSLPSPEMEDAVF-YVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEF 73
+L ++ T LP +D VF +E + Y+F K LL EALTH S + Y+RLEF
Sbjct: 1226 ILSASVQTYLP----KDNVFEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEF 1281
Query: 74 IGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALD 133
+GDA L + L+ Y+F ++ + G+L+ LR+A+++ E A+VAVKH F+ F++HS+ L
Sbjct: 1282 LGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLL 1341
Query: 134 DKVKEFA---EAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRG 190
D++ E+ E S + + G K PKVL DIVESIA AI +D DL +W IF
Sbjct: 1342 DQITEYVNRLEGSSMDKVELLSDGLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEP 1401
Query: 191 LLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYV---DGSFVASA 247
LL PIVT E L+ P L + C K+G V I + +A++ V + V
Sbjct: 1402 LLSPIVTPENLEL--PPYRELIEWCGKHGYFVGINCRDQGDTVVATLDVQLKEVLLVRQG 1459
Query: 248 SSEQKEIAKLNAAREALEKLAQS---MPVNCDVCEIF---------------DDIDEKF- 288
S++++ AK +A+ L+ L + +P N E F D +D +
Sbjct: 1460 FSKKRKDAKAHASSLLLKDLEEKGLIIPKNASKTEQFEKHCGSTNPFNNLHVDAMDTQTP 1519
Query: 289 ----EIEAAKQK-------------------------LHELCGKKKWPKPSYKIEKDE-- 317
E AA + L+ELC K +WP P+ + EK +
Sbjct: 1520 KPTKEKNAADSRNISDPLLGKPLHVIVKTSKGGPRIALYELCKKLQWPMPTMESEKVQPS 1579
Query: 318 --------GPSHDKKFMSAVQIATT-------DGVLFITGDEKSRVKDAENSAASMMLRA 362
G S K A A+T V+ +TGD ++ K +++SAA +L
Sbjct: 1580 FSSVCSSPGGSSQKATPQAFAFASTITLHIPNADVISLTGDGRADKKSSQDSAALFLLYE 1639
Query: 363 LRESTYL 369
L+ L
Sbjct: 1640 LQRRGTL 1646
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ EA+T ++ S +RLE +GD+ L A+S ++FL +P D GQLS +R I
Sbjct: 1049 LILEAITTLRCSEDFSMERLELLGDSVLKYAVSCHLFLKFPNKDEGQLSSIRCHMICNAT 1108
Query: 112 LARVAVKHGFYKFVRHSA 129
L ++ ++ +VR +A
Sbjct: 1109 LYKLGIERNVQGYVRDAA 1126
>gi|218189575|gb|EEC72002.1| hypothetical protein OsI_04862 [Oryza sativa Indica Group]
Length = 1858
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 130/422 (30%), Positives = 200/422 (47%), Gaps = 81/422 (19%)
Query: 18 LLKEAMLTSLPSPEMEDAVF-YVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEF 73
+L ++ T LP +D VF +E + Y+F K LL EALTH S + Y+RLEF
Sbjct: 1160 ILSASVQTYLP----KDNVFEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEF 1215
Query: 74 IGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALD 133
+GDA L + L+ Y+F ++ + G+L+ LR+A+++ E A+VAVKH F+ F++HS+ L
Sbjct: 1216 LGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLL 1275
Query: 134 DKVKEFA---EAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRG 190
D++ E+ E S + + G K PKVL DIVESIA AI +D DL +W IF
Sbjct: 1276 DQITEYVNRLEGSSMDKVELLSDGLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEP 1335
Query: 191 LLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYV---DGSFVASA 247
LL PIVT E L+ P L + C K+G V I + +A++ V + V
Sbjct: 1336 LLSPIVTPENLEL--PPYRELIEWCGKHGYFVGINCRDQGDTVVATLDVQLKEVLLVRQG 1393
Query: 248 SSEQKEIAKLNAAREALEKLAQS---MPVNCDVCEIFD--------------DIDEKFEI 290
S++++ AK +A+ L+ L + +P N E F+ D +
Sbjct: 1394 FSKKRKDAKAHASSLLLKDLEEKGLILPKNASKTEQFEKHCGSTNPFNNLHVDAMDTHTP 1453
Query: 291 EAAKQK-------------------------------LHELCGKKKWPKPSYKIEKDE-- 317
+ K+K L+ELC K +WP P+ + EK +
Sbjct: 1454 KPTKEKNAADSRNISDPLLGKPLHVIVKTSKGGPRIALYELCKKLQWPMPTMESEKVQPS 1513
Query: 318 --------GPSHDKKFMSAVQIATT-------DGVLFITGDEKSRVKDAENSAASMMLRA 362
G S K A A+T V+ +TGD ++ K +++SAA +L
Sbjct: 1514 FSSVCSSPGGSSQKATPQAFAFASTITLHIPNADVISLTGDGRADKKSSQDSAALFLLYE 1573
Query: 363 LR 364
L+
Sbjct: 1574 LQ 1575
>gi|222619725|gb|EEE55857.1| hypothetical protein OsJ_04485 [Oryza sativa Japonica Group]
Length = 1839
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 132/422 (31%), Positives = 202/422 (47%), Gaps = 81/422 (19%)
Query: 18 LLKEAMLTSLPSPEMEDAVF-YVENIINYNFKNKRLLEEALTHSSYTDSTS---YQRLEF 73
+L ++ T LP +D VF +E + Y+F K LL EALTH S + + Y+RLEF
Sbjct: 1160 ILSASVQTYLP----KDNVFEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEF 1215
Query: 74 IGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALD 133
+GDA L + L+ Y+F ++ + G+L+ LR+A+++ E A+VAVKH F+ F++HS+ L
Sbjct: 1216 LGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLL 1275
Query: 134 DKVKEFA---EAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRG 190
D++ E+ E S + + G K PKVL DIVESIA AI +D DL +W IF
Sbjct: 1276 DQITEYVNRLEGSSMDKVELLSDGLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEP 1335
Query: 191 LLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYV---DGSFVASA 247
LL PIVT E L+ P L + C K+G V I + +A++ V + V
Sbjct: 1336 LLSPIVTPENLEL--PPYRELIEWCGKHGYFVGINCRDQGDTVVATLDVQLKEVLLVRQG 1393
Query: 248 SSEQKEIAKLNAAREALEKLAQS---MPVNCDVCEIF---------------DDIDEKF- 288
S++++ AK +A+ L+ L + +P N E F D +D +
Sbjct: 1394 FSKKRKDAKAHASSLLLKDLEEKGLIIPKNASKTEQFEKHCGSTNPFNNLHVDAMDTQTP 1453
Query: 289 ----EIEAAKQK-------------------------LHELCGKKKWPKPSYKIEKDE-- 317
E AA + L+ELC K +WP P+ + EK +
Sbjct: 1454 KPTKEKNAADSRNISDPLLGKPLHVIVKTSKGGPRIALYELCKKLQWPMPTMESEKVQPS 1513
Query: 318 --------GPSHDKKFMSAVQIATT-------DGVLFITGDEKSRVKDAENSAASMMLRA 362
G S K A A+T V+ +TGD ++ K +++SAA +L
Sbjct: 1514 FSSVCSSPGGSSQKATPQAFAFASTITLHIPNADVISLTGDGRADKKSSQDSAALFLLYE 1573
Query: 363 LR 364
L+
Sbjct: 1574 LQ 1575
>gi|334185719|ref|NP_001154663.2| protein dicer-like 3 [Arabidopsis thaliana]
gi|332644323|gb|AEE77844.1| protein dicer-like 3 [Arabidopsis thaliana]
Length = 1570
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 160/323 (49%), Gaps = 38/323 (11%)
Query: 33 EDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYP 92
ED + +E I + F K LL+EA+THSS +S SY+RLEF+GD+ L ++ ++F Y
Sbjct: 1185 EDELIELERKIQHEFSAKFLLKEAITHSSLRESYSYERLEFLGDSVLDFLITRHLFNTYE 1244
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
Q PG+++ LR+A ++ E A+VAVK+ + ++ A L+ ++ ++ + + D T
Sbjct: 1245 QTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRS 1304
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
SI+ PK L D+VESIA A+ +D DL ++W +F LL P+VT ++LQ P L
Sbjct: 1305 IPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPP--YRELN 1362
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYV--DGSFVASASSEQK--------------EIAK 256
+LC G +K K A++ + D + SEQ ++ K
Sbjct: 1363 ELCDSLGYFFRVKCSNDGVKAQATIQLQLDDVLLTGDGSEQTNKLALGKAASHLLTQLEK 1422
Query: 257 LNAARE-ALEKLAQSMPVN--CDVCEIFDDIDEKFEIEA---------------AKQKLH 298
N +R+ +L SM VN C+ + E EI++ + LH
Sbjct: 1423 RNISRKTSLGDNQSSMDVNLACNHSDRETLTSETTEIQSIVIPFIGPINMKKGGPRGTLH 1482
Query: 299 ELCGKKKWPKPSYKI--EKDEGP 319
E C K WP P++ EK P
Sbjct: 1483 EFCKKHLWPMPTFDTSEEKSRTP 1505
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+I N++ + +LE A+T + +S S +RLE +GD+ L S ++FL YP D GQLS
Sbjct: 985 SIDNFSISSTSILE-AVTTLTCPESFSMERLELLGDSVLKYVASCHLFLKYPDKDEGQLS 1043
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSA 129
R + IS L R+ ++R+ A
Sbjct: 1044 RQRQSIISNSNLHRLTTSRKLQGYIRNGA 1072
>gi|334185717|ref|NP_001154662.2| protein dicer-like 3 [Arabidopsis thaliana]
gi|322518661|sp|Q9LXW7.2|DCL3_ARATH RecName: Full=Endoribonuclease Dicer homolog 3; AltName:
Full=Dicer-like protein 3; Short=AtDCL3
gi|332644322|gb|AEE77843.1| protein dicer-like 3 [Arabidopsis thaliana]
Length = 1580
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 160/323 (49%), Gaps = 38/323 (11%)
Query: 33 EDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYP 92
ED + +E I + F K LL+EA+THSS +S SY+RLEF+GD+ L ++ ++F Y
Sbjct: 1195 EDELIELERKIQHEFSAKFLLKEAITHSSLRESYSYERLEFLGDSVLDFLITRHLFNTYE 1254
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
Q PG+++ LR+A ++ E A+VAVK+ + ++ A L+ ++ ++ + + D T
Sbjct: 1255 QTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRS 1314
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
SI+ PK L D+VESIA A+ +D DL ++W +F LL P+VT ++LQ P L
Sbjct: 1315 IPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPP--YRELN 1372
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYV--DGSFVASASSEQK--------------EIAK 256
+LC G +K K A++ + D + SEQ ++ K
Sbjct: 1373 ELCDSLGYFFRVKCSNDGVKAQATIQLQLDDVLLTGDGSEQTNKLALGKAASHLLTQLEK 1432
Query: 257 LNAARE-ALEKLAQSMPVN--CDVCEIFDDIDEKFEIEA---------------AKQKLH 298
N +R+ +L SM VN C+ + E EI++ + LH
Sbjct: 1433 RNISRKTSLGDNQSSMDVNLACNHSDRETLTSETTEIQSIVIPFIGPINMKKGGPRGTLH 1492
Query: 299 ELCGKKKWPKPSYKI--EKDEGP 319
E C K WP P++ EK P
Sbjct: 1493 EFCKKHLWPMPTFDTSEEKSRTP 1515
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+I N++ + +LE A+T + +S S +RLE +GD+ L S ++FL YP D GQLS
Sbjct: 995 SIDNFSISSTSILE-AVTTLTCPESFSMERLELLGDSVLKYVASCHLFLKYPDKDEGQLS 1053
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSA 129
R + IS L R+ ++R+ A
Sbjct: 1054 RQRQSIISNSNLHRLTTSRKLQGYIRNGA 1082
>gi|15229816|ref|NP_189978.1| protein dicer-like 3 [Arabidopsis thaliana]
gi|7594553|emb|CAB88120.1| putative protein [Arabidopsis thaliana]
gi|94450858|gb|ABF19799.1| dicer-like 3 [Arabidopsis thaliana]
gi|332644321|gb|AEE77842.1| protein dicer-like 3 [Arabidopsis thaliana]
Length = 1531
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 160/323 (49%), Gaps = 38/323 (11%)
Query: 33 EDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYP 92
ED + +E I + F K LL+EA+THSS +S SY+RLEF+GD+ L ++ ++F Y
Sbjct: 1146 EDELIELERKIQHEFSAKFLLKEAITHSSLRESYSYERLEFLGDSVLDFLITRHLFNTYE 1205
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
Q PG+++ LR+A ++ E A+VAVK+ + ++ A L+ ++ ++ + + D T
Sbjct: 1206 QTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRS 1265
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
SI+ PK L D+VESIA A+ +D DL ++W +F LL P+VT ++LQ P L
Sbjct: 1266 IPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPP--YRELN 1323
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYV--DGSFVASASSEQK--------------EIAK 256
+LC G +K K A++ + D + SEQ ++ K
Sbjct: 1324 ELCDSLGYFFRVKCSNDGVKAQATIQLQLDDVLLTGDGSEQTNKLALGKAASHLLTQLEK 1383
Query: 257 LNAARE-ALEKLAQSMPVN--CDVCEIFDDIDEKFEIEA---------------AKQKLH 298
N +R+ +L SM VN C+ + E EI++ + LH
Sbjct: 1384 RNISRKTSLGDNQSSMDVNLACNHSDRETLTSETTEIQSIVIPFIGPINMKKGGPRGTLH 1443
Query: 299 ELCGKKKWPKPSYKI--EKDEGP 319
E C K WP P++ EK P
Sbjct: 1444 EFCKKHLWPMPTFDTSEEKSRTP 1466
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+I N++ + +LE A+T + +S S +RLE +GD+ L S ++FL YP D GQLS
Sbjct: 946 SIDNFSISSTSILE-AVTTLTCPESFSMERLELLGDSVLKYVASCHLFLKYPDKDEGQLS 1004
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSA 129
R + IS L R+ ++R+ A
Sbjct: 1005 RQRQSIISNSNLHRLTTSRKLQGYIRNGA 1033
>gi|168027292|ref|XP_001766164.1| dsRNA-specific nuclease dicer and related ribonuclease
[Physcomitrella patens subsp. patens]
gi|162682596|gb|EDQ69013.1| dsRNA-specific nuclease dicer and related ribonuclease
[Physcomitrella patens subsp. patens]
Length = 1460
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 119/206 (57%), Gaps = 9/206 (4%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTDS---TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E I Y FKNK L EALTH S YQRLEF+GDA L L+ ++F ++P P
Sbjct: 1228 EKRIGYTFKNKYLPLEALTHFSNMVGDQIRCYQRLEFLGDAVLDFLLTRHLFTSHPTSTP 1287
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA---EAVSQEDNTAVYG 153
G L+ LR A+++ E+ ARVAVKH + ++RH + L +++EF EA + + +G
Sbjct: 1288 GLLTSLRTASVNNERFARVAVKHRLHCYLRHGSGRLLHQIEEFVKSFEAADDDQKNSSFG 1347
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
++APKVL D+VESIA AI VD FDL K+W + LLEPIVT L PVT L
Sbjct: 1348 LNGLEAPKVLGDLVESIAGAILVDTCFDLDKVWAVMMPLLEPIVTPATL--DIHPVTELE 1405
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVY 238
+LC G + +++ N ++Y
Sbjct: 1406 ELCMSKGYSIKYGVHKEDECNSRAIY 1431
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
+ALT + ++ + + LE GD+ L A+S +FL + G LS R +I E L +
Sbjct: 1017 KALTTTRCNENFNMEALELFGDSFLKYAVSRKLFLESSTANEGVLSTRRIRSICNEALHK 1076
Query: 115 VAVKHGFYKFVR 126
+AV G ++R
Sbjct: 1077 LAVDRGLSAYIR 1088
>gi|297815500|ref|XP_002875633.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp.
lyrata]
gi|297321471|gb|EFH51892.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp.
lyrata]
Length = 1521
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 107/378 (28%), Positives = 178/378 (47%), Gaps = 49/378 (12%)
Query: 33 EDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYP 92
+D + +E I + F K LL+EA+THSS +S SY+RLEF+GD+ L ++ ++F Y
Sbjct: 1136 DDELTELERKIQHEFSAKFLLKEAITHSSVHESYSYERLEFLGDSVLDFLITRHLFNTYE 1195
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
Q PG+++ LR+A ++ E A+VAVK+ + ++ A L++++ E+ + + D T
Sbjct: 1196 QTGPGEMTDLRSACVNNENFAQVAVKNNLHIHLQRCATVLENQINEYLMSFQKPDETGRS 1255
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
SI+ PK L D+VESIA A+ +D DL ++W +F LL P+VT ++LQ P L
Sbjct: 1256 IPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQL--PPYRELN 1313
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYV---DGSFVASASSEQKEIAKLNAAREALEKLAQ 269
+LC G K K A++++ D S + ++A AA L +L +
Sbjct: 1314 ELCDSLGYFFREKCSNDGVKAQATIHLQLGDVLLTGDGSEQTNKLALGKAASHLLTQLEK 1373
Query: 270 --------------SMPVN--CDVCEIFDDIDEKFEIEA---------------AKQKLH 298
SM VN C+ + + EI++ + LH
Sbjct: 1374 RNISRKISIGDNQSSMDVNLACNHSDRETPTSDSIEIQSIVIPVIGPINTKKGGPRGTLH 1433
Query: 299 ELCGKKKWPKPSYK------------IEKDEGPSHDKKFMSAVQIATTD-GVLFITGDEK 345
E C K WP P++ + DE + F S + + + G + G+ +
Sbjct: 1434 EFCKKHLWPTPTFDTSEEKSRTPFEFTDGDEKRTSFSSFTSTITLRIPNRGAVMYAGEAR 1493
Query: 346 SRVKDAENSAASMMLRAL 363
K + +SA +L L
Sbjct: 1494 PDKKSSFDSAVVELLYEL 1511
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+I N++ + +LE A+T + ++ S +RLE +GD+ L S Y+FL YP D GQLS
Sbjct: 936 SIDNFSISSTSILE-AVTTLTCPEAFSMERLELLGDSVLKYVASCYLFLKYPDKDEGQLS 994
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSA 129
R + IS L R+A ++R+ A
Sbjct: 995 RQRQSIISNSNLHRLATNRKLQGYIRNGA 1023
>gi|157285011|gb|ABV31245.1| dicer-like 3 [Physcomitrella patens]
Length = 1641
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 118/206 (57%), Gaps = 9/206 (4%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTDS---TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E I Y FKN L EALTH S YQRLEF+GDA L L+ ++F ++P P
Sbjct: 1354 EKRIGYTFKNIYLPLEALTHFSNMVGDQIRCYQRLEFLGDAVLDFLLTRHLFTSHPTSTP 1413
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA---EAVSQEDNTAVYG 153
G L+ LR A+++ E+ ARVAVKH + ++RH + L +++EF EA + + +G
Sbjct: 1414 GLLTSLRTASVNNERFARVAVKHRLHCYLRHGSGRLLHQIEEFVKSFEAADDDQKNSSFG 1473
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
++APKVL D+VESIA AI VD FDL K+W + LLEPIVT L PVT L
Sbjct: 1474 LNGLEAPKVLGDLVESIAGAILVDTCFDLDKVWAVMMPLLEPIVTPATL--DIHPVTELE 1531
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVY 238
+LC G + +++ N ++Y
Sbjct: 1532 ELCMSKGYSIKYGVHKEDECNSRAIY 1557
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
+ALT + ++ + + LE GD+ L A+S +FL + G LS R +I E L +
Sbjct: 1143 KALTTTRCNENFNMEALELFGDSFLKYAVSRKLFLESSTANEGVLSTRRIRSICNEALHK 1202
Query: 115 VAVKHGFYKFVR 126
+AV G ++R
Sbjct: 1203 LAVDRGLSAYIR 1214
>gi|449489290|ref|XP_004158269.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog
3a-like [Cucumis sativus]
Length = 1639
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 117/400 (29%), Positives = 193/400 (48%), Gaps = 59/400 (14%)
Query: 19 LKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIG 75
+ A L S P + E A +E+ I Y+F K LL EA+TH+S + + YQRLEF+G
Sbjct: 1237 ITSASLRSCPLGDTEIAT--LESKIGYDFAVKGLLLEAVTHTSDQEIGVNYCYQRLEFLG 1294
Query: 76 DAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDK 135
D+ L L ++ + + Y +DPG+L+ LR+A+++ E A+VAV+ + ++H + L +
Sbjct: 1295 DSVLDLLITWHYYQNYSDIDPGELTDLRSASVNNENFAQVAVRRNLQQHLQHCSGLLMSQ 1354
Query: 136 VKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195
+ E+ + +S+ +T K PKVL D+VESIA AI +D +L ++W I++ LL P
Sbjct: 1355 ITEYVKYLSESQDTGKPLHGNKGPKVLGDMVESIAGAILIDTKLNLDEVWKIYKPLLTPF 1414
Query: 196 VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYV---DGSFVASASSEQK 252
VT ++L+ P+ L +LC G + K RK A + + D + +
Sbjct: 1415 VTPDKLEL--PPLRELIELCDSLGYFIKDKCTRKGETFHAELRLQLQDSLLIGEGYERTR 1472
Query: 253 EIAKLNAAREALEKL------------------------AQSMP--VNC--DVCE----- 279
+ A+ AA L +L A +P VNC D C+
Sbjct: 1473 KAARGEAAHRLLAQLETRGISYSRSGSKKRKQNPSHDESAMVLPSSVNCSTDACDPNVET 1532
Query: 280 -IFDDIDEKFEIEAAKQKLHELCGKKKWPKPSY---------KIEKDEGPSHDKKFMSAV 329
+ I+ K + L ELC K +WP P++ +IE EG K F S +
Sbjct: 1533 PVIGPINLK--KGGPRSTLFELCKKLQWPMPTFNTVENKSRVQIEIGEGLEKRKGFNSFL 1590
Query: 330 QIATTD----GVLFITGDEKSRVKDAENSAASMMLRALRE 365
T G + G+ ++ K + +SA+ +ML+ L++
Sbjct: 1591 SNITLQIPNAGYVECEGEARADKKSSFDSASLVMLQELQQ 1630
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 66/164 (40%), Gaps = 30/164 (18%)
Query: 43 INYNFKN----KRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
INY+ + L+ EALT ++ S +RLE +GD+ L A+S ++FL +P+ GQ
Sbjct: 1046 INYHSNSLGISSSLILEALTTLGSCENFSLERLELLGDSVLKYAVSCHLFLKFPEKHEGQ 1105
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSA--------------------AALDDKVKE 138
LS R I L + K G ++R SA +D
Sbjct: 1106 LSSRRQQVICNATLHALGTKCGLQGYIRDSAFDPRRWVAPGQCTNRPVPCKCGVDTVEVP 1165
Query: 139 FAEAVSQEDNTAVYGGSIK------APKVLADIVESIAAAIYVD 176
+ ED V G K +AD E++ A YVD
Sbjct: 1166 LHDKFCTEDPKVVLGKCCDKGHRWVVSKTIADCAEALIGAYYVD 1209
>gi|255589974|ref|XP_002535144.1| dicer-1, putative [Ricinus communis]
gi|223523936|gb|EEF27239.1| dicer-1, putative [Ricinus communis]
Length = 259
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 137/255 (53%), Gaps = 39/255 (15%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST-SYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
VE I+ Y FKN+ LLEEA T SS+ SY+RLE +GD+ L L + + YP L PG
Sbjct: 35 VEEILKYKFKNRSLLEEAFTDSSFPGKCFSYERLEHVGDSVLNLLFTKEHYFKYPNLPPG 94
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157
L+ LRAAN+ TEKLARVAVKHGF++F+RH L+++++EF++A+ + + G +
Sbjct: 95 ALTRLRAANVDTEKLARVAVKHGFHRFLRHKKPLLEEQIREFSQAILEYPLHS--NGLVD 152
Query: 158 APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQK 217
PKVLADIVES A+++D + + +W ++
Sbjct: 153 VPKVLADIVESAIGAVFIDSNSSVDTVWK-----------------------------KR 183
Query: 218 NGKQVDIKHWRKNRKNIASVYVDGSFVASAS-SEQKEIAKLNAAREALEKLAQSM----P 272
N K + WR++ V++D V + +KEIA AA++AL+ + + +
Sbjct: 184 NLKVKFVDLWRESMA--VDVFIDDQLVGRGTYGLKKEIAHNRAAKDALDNIGRILGDKDT 241
Query: 273 VNCDVCEIFDDIDEK 287
+ C + DIDE+
Sbjct: 242 TDHASCFLQTDIDEQ 256
>gi|357131511|ref|XP_003567380.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Brachypodium
distachyon]
Length = 1183
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 125/416 (30%), Positives = 198/416 (47%), Gaps = 69/416 (16%)
Query: 18 LLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFI 74
+L +M T +P ++ +A+ E + Y F K LL EALTH S+ +S SY+RLEF+
Sbjct: 768 ILSASMKTYVPKIDLVEAL---EAKLGYAFSVKGLLLEALTHPSHQESEERYSYERLEFL 824
Query: 75 GDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDD 134
GDAAL + L+ ++F ++ D G+L+ LR+A+++ E A+VAVKH + F++ S+ L D
Sbjct: 825 GDAALDILLTWHLFSSHKDTDEGELTDLRSASVNNENFAKVAVKHKLHHFLQQSSGILLD 884
Query: 135 KVKEFAEAV---SQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGL 191
++ E+A ++ S ++ ++ PKVL DIVESIA AI +D DL + +F+ L
Sbjct: 885 QITEYANSLENSSMDEINLSSDAPLRGPKVLGDIVESIAGAILIDTKLDLDVVRGVFKPL 944
Query: 192 LEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNR-KNIASVYVDGSFVASAS-S 249
L PIVT E L+ P L + C KNG + IK ++ + I V ++ V
Sbjct: 945 LSPIVTPENLEL--PPFRELLEWCNKNGYFLGIKCTDGDKIQAILDVQLEDVLVIRRGFG 1002
Query: 250 EQKEIAKLNAAREALEKL-------------AQSMPVNC---DVC-EIFDDIDE------ 286
+ K+ AK +AA L+ L + C + C +FD +D
Sbjct: 1003 KNKKDAKAHAASMLLKDLEEKGFIISKNAIRTEQFQKQCGSENSCYNMFDAMDTQVLTPF 1062
Query: 287 ------------------KFEIEAAKQKLHELCGKKKWPKPSYKIEK--------DEGPS 320
K + L+E C K +WP P + K G S
Sbjct: 1063 WGNESAGPVLDKPVHVAVKTSKGGPRVALYEFCKKLQWPAPKFDSVKVLPSSACPPSGGS 1122
Query: 321 HDKK------FMSAVQIATTDG-VLFITGDEKSRVKDAENSAASMMLRALRESTYL 369
K F S + + + V+ +TGD + K +++SAA +ML L+ L
Sbjct: 1123 SVKATPTQEFFASTITLHMPNSDVISLTGDGFADKKSSQDSAALLMLHELQRRGRL 1178
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 12/135 (8%)
Query: 1 MNPE---SFTLPRATVTDYRLLKEAML---TSLPSPEMEDAVFYVENIINYNFKNKRLLE 54
M PE LP + + L M T + + ++ + Y NI ++ L+
Sbjct: 539 MPPELLIPLNLPEDILRAFYLFPSLMYRMETLMLASQLRSEIAYDSNISSF------LIL 592
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EA+T ++ S +RLE +GD+ L A+S ++FL +P GQLS R IS L R
Sbjct: 593 EAITTLRCSEDFSMERLELLGDSVLKYAVSCHLFLKFPDKHEGQLSSSRIDIISNAALHR 652
Query: 115 VAVKHGFYKFVRHSA 129
+ +KH ++R +A
Sbjct: 653 LGIKHKIQGYIRDAA 667
>gi|379987680|gb|AFD22620.1| dicer-like 3 protein, partial [Nicotiana attenuata]
Length = 596
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 125/423 (29%), Positives = 198/423 (46%), Gaps = 88/423 (20%)
Query: 19 LKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIG 75
+K A L S +P+ +D + +E ++Y F K LL EA+TH++ + S +YQRLEF+G
Sbjct: 173 IKTAFLYSY-TPKAKD-IEDLELKLSYKFSVKGLLLEAITHATVLEVDVSYNYQRLEFLG 230
Query: 76 DAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDK 135
D+ L + ++ Y++ + +DPG+L+ LR+A+++ + A AVK + ++H + L+ +
Sbjct: 231 DSVLDILITWYLYQKHKDIDPGELTDLRSASVNNDNFAYAAVKRELHVHLQHHSGYLESE 290
Query: 136 VKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195
+ F + VS D+ ++ G KAPKVL D+VESIA AI VD +L ++W I + LL PI
Sbjct: 291 ISAFVKLVS--DSCSLQGN--KAPKVLGDLVESIAGAILVDTKLNLDEVWKIVKPLLSPI 346
Query: 196 VTLEELQQQPQPVTLLFKLCQKNGK--------QVDIKH-------------------WR 228
VT ++L+ P+ L +LC G + D H R
Sbjct: 347 VTPDKLEL--PPLRELIELCDSLGYFLKDHCMVKGDTVHAELRLQLKDELLVAEGCGQTR 404
Query: 229 KNRKNIA-----------------------------SVYVDGSFVASASSEQKEIAKLNA 259
KN K A S+ DG + A++ +A
Sbjct: 405 KNAKGQAALKLLKDLEHKGISSKKKKQETSLVDVPYSLGTDGDICSQANNTCPAMAPCKK 464
Query: 260 AREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAK----QKLHELCGKKKWPKPSYKIEK 315
+ L L + C DI I K Q L+ELC K +WP PS +E
Sbjct: 465 QKTILSNLETAKAQPSSACNSNKDIQAIGPINMKKGGPRQSLYELCKKLQWPMPS--LES 522
Query: 316 DE---------GPSHDKK-----FMSAVQIATTD-GVLFITGDEKSRVKDAENSAASMML 360
E G DK+ F S + + D G++ +TGDE++ K +++SAA +ML
Sbjct: 523 TERKSKSLTECGEGSDKRKVYNTFASQISLTIPDYGLIELTGDERADKKSSQDSAALLML 582
Query: 361 RAL 363
L
Sbjct: 583 YEL 585
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 63 TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFY 122
+S S +RLE +GD+ L A+S ++FL YP+ GQLS R+ +S L +V
Sbjct: 5 NESFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSDQRSWAVSNSTLHKVGTSRHLQ 64
Query: 123 KFVRHSA 129
++R A
Sbjct: 65 GYIRDGA 71
>gi|294463153|gb|ADE77113.1| unknown [Picea sitchensis]
Length = 173
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 108/148 (72%), Gaps = 1/148 (0%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVF 88
S + ED++ +E+I+ Y FK+K LL+EA+THSS ++ SY++LEF+GD+ LG ++ +++
Sbjct: 12 SVDTEDSLSELEDILKYKFKSKSLLKEAITHSSNNNTESYEKLEFVGDSVLGYLVTKHLY 71
Query: 89 LAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN 148
AYP+L G L+LLR+ N+ TEK ARV VKH F++++ +A AL +++F + + ++++
Sbjct: 72 CAYPKLYQGTLTLLRSRNVDTEKFARVCVKHKFHQYLLLNAPALQQIIEDFVKDI-EDES 130
Query: 149 TAVYGGSIKAPKVLADIVESIAAAIYVD 176
+ G K PKVLADIVESIA A++VD
Sbjct: 131 KSFRCGDFKPPKVLADIVESIAGAVFVD 158
>gi|255550219|ref|XP_002516160.1| Ribonuclease III, putative [Ricinus communis]
gi|223544646|gb|EEF46162.1| Ribonuclease III, putative [Ricinus communis]
Length = 1660
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 116/399 (29%), Positives = 182/399 (45%), Gaps = 65/399 (16%)
Query: 33 EDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFL 89
ED + +E+ + Y F K LL+EA+TH+S + YQRLEF+GD+ L L ++ +++
Sbjct: 1259 EDEIKGIESKLGYTFSVKFLLQEAMTHASMQEQGIGYCYQRLEFLGDSVLDLLITWHLYQ 1318
Query: 90 AYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNT 149
+ +DPG+L+ LR+A +S E A+V V+ YK ++H + L ++KE+ E+ + D
Sbjct: 1319 NHTSMDPGELTDLRSACVSNENFAQVVVRRDLYKHLQHCSTLLLSQIKEYLESFHESDEV 1378
Query: 150 AVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVT 209
A G K PK L D++ESIA A+ +D +L ++W IF LL P+ T + L+ P+
Sbjct: 1379 AKATGP-KGPKALGDLLESIAGAMLIDAKLNLDEVWRIFMPLLSPLATPQNLEL--PPLR 1435
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYV---DGSFVASASSEQKEIAKLNAAREALEK 266
L +LC G + K N A + + D V + ++ AK AA L+K
Sbjct: 1436 ELMQLCNSLGYFIKEKCINNNDIVHAELRLQLNDVLLVGNGCDRSRKAAKGKAATHLLKK 1495
Query: 267 LAQ-----------------SMPVNCDVCEIFDDI--------------------DEKFE 289
L + V+ +I +D D F
Sbjct: 1496 LENRGITYSWGHSKRRKQDSNHVVDSSPLDITNDKAKDHKKPKKLENQSPAGSGGDPSFA 1555
Query: 290 --IEAAKQK-------LHELCGKKKWPKPSYK---------IEKDEGPSHDKKFMSAVQI 331
IEA K L ELC K +W P+Y I DEG F+S + +
Sbjct: 1556 GIIEAINMKKGGPRTDLFELCKKVQWTTPTYSSTENKSSTPILFDEGIERYNSFVSTITL 1615
Query: 332 ATT-DGVLFITGDEKSRVKDAENSAASMMLRALRESTYL 369
G + TGD + K + ++AA ML L++ L
Sbjct: 1616 NIPFYGTIECTGDPRPDKKSSCDTAALAMLYELQKQGLL 1654
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ EA+T + S +RLE +GD+ L ++S +FL YP GQLS R +
Sbjct: 1069 LILEAITTPRSCEKVSMERLELLGDSVLKYSVSCDLFLRYPTKHEGQLSAQRTRAVCNST 1128
Query: 112 LARVAVKHGFYKFVRHSA 129
L ++ + ++R SA
Sbjct: 1129 LHQLGIGCKLQGYIRDSA 1146
>gi|357465903|ref|XP_003603236.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
gi|355492284|gb|AES73487.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
Length = 1758
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 135/237 (56%), Gaps = 10/237 (4%)
Query: 39 VENIINYNFKNKRLLEEALTH---SSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E I Y F K LL EA TH S + Y+RLEF+GD+ L L ++ ++F ++ ++D
Sbjct: 1324 LEAKIGYEFSVKGLLVEATTHLSESEHGTGCCYERLEFLGDSVLDLLITWHLFQSHTEID 1383
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
PG+L+ LR+A+++ E A+ AV+ ++ + HS+ L ++ E+A+ +S+ ++ AV
Sbjct: 1384 PGELTDLRSASVNNENFAQAAVRRNLHQHLLHSSGLLQSQILEYAKVISEPEDNAVPLQG 1443
Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLC 215
IKAPK L D+VESIA AI +D DL ++W +F LL PIVT E+L+ P+ L +L
Sbjct: 1444 IKAPKALGDLVESIAGAILIDTKLDLDQVWKVFNPLLSPIVTPEKLEL--PPLRELMQLS 1501
Query: 216 QKNGKQVDIK--HWRKNRKNIASVYV---DGSFVASASSEQKEIAKLNAAREALEKL 267
G V +K H +K + V + V K+ AK +AA + L+ L
Sbjct: 1502 DSLGYFVKVKVSHDKKGTMEHVEIRVQLPNERLVREGKGPNKKSAKGDAAFQLLKDL 1558
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 46 NFK-NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRA 104
NFK L+ EALT + S +RLE +GD+ L A+S +++L YP+ G LS LR
Sbjct: 1121 NFKIPSSLVLEALTTLRCCEKFSMERLELLGDSVLKYAVSCHLYLKYPKKHEGHLSSLRQ 1180
Query: 105 ANISTEKLARVAVKHGFYKFVRHSA 129
+ L ++ H ++R SA
Sbjct: 1181 WAVRNSTLHKLGTDHNLQGYIRDSA 1205
>gi|116788280|gb|ABK24820.1| unknown [Picea sitchensis]
Length = 330
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 140/243 (57%), Gaps = 13/243 (5%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYP 92
V Y+E+++ Y+F+ L+ E++TH+SY + S YQRLEF+GDA L ++ Y + YP
Sbjct: 82 VRYLESLLKYSFRVHTLVVESVTHASYKEPSFSGCYQRLEFLGDAVLDYLITLYFYKTYP 141
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTA-- 150
L PG L+ LR+A ++ + A+ AVK ++ +RH+++ L +++ EFA+ +S +
Sbjct: 142 GLSPGLLTDLRSAAVNNDCYAQAAVKCNLHQQLRHASSELHNQITEFAKLISSSSASGDH 201
Query: 151 VYGGS---IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP 207
+G + + PKVL D++ESIA A+ VD +FD Q +W + LLEP+VT + ++ QP
Sbjct: 202 FFGWTTTEVAVPKVLGDLIESIAGAVLVDSEFDTQLVWNAMKPLLEPLVTPKTIKY--QP 259
Query: 208 VTLLFKLCQKNGKQVDIKHWRKNRKNIASVYV---DGSFVASASSEQKEIAKLNAAREAL 264
V L +LCQK ++ + V V S++ + + K AK AA + L
Sbjct: 260 VRELQELCQKEFYTCCFDDSQEEGTSTVKVEVRVKGDSYIETCEASNKRTAKKLAAEKVL 319
Query: 265 EKL 267
+ L
Sbjct: 320 KSL 322
>gi|359475987|ref|XP_002280293.2| PREDICTED: endoribonuclease Dicer homolog 3a-like [Vitis vinifera]
Length = 1648
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/383 (27%), Positives = 192/383 (50%), Gaps = 59/383 (15%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E+ I Y F K LL EA+TH++ + YQRLEF+GD+ L + ++ +++ ++ +D
Sbjct: 1259 LESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLITWHLYQSHRDID 1318
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
PG+L+ LR+A+++ E A+VAV+ + ++H + L ++KE+A+ +S D+ S
Sbjct: 1319 PGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKYLSGSDDVPNPLQS 1378
Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLC 215
K PK L D+VESIA AI +D +L ++W IF+ LL PIVT ++L+ P+ L +LC
Sbjct: 1379 TKGPKALGDLVESIAGAILIDTKLNLNEVWRIFKPLLSPIVTPDKLEL--PPLRELNELC 1436
Query: 216 QKNGKQVDIKHWRKN-------RKNIASVYVDGSFVASASS--------------EQKEI 254
G + K K R + V + G E++ I
Sbjct: 1437 DSLGYFIKEKCTNKGELVHAELRLQMIDVLLVGEGCGRNKKAAKGQAAAQLLKNLEKRGI 1496
Query: 255 --AKLNAAREA----LEKLAQSMPVNCDVCEIFDDID--EKFEIEAA------------K 294
++ N+ R L ++ S+ + D C ++ D E ++ A +
Sbjct: 1497 SYSRSNSKRRKQGADLVGVSSSLNMGGDACGQSNNEDSSENYDFVFAVIKSINMKKGGPR 1556
Query: 295 QKLHELCGKKKWPKPSYKIEKDE-------GPSHDKK-----FMSAVQIATTD-GVLFIT 341
L+ELC + +WP PS++ ++ G +++ F+S++ + + GV+
Sbjct: 1557 SSLYELCKRLQWPMPSFESKEQRSRFPIIFGEGSERREGFNSFISSISLHIPNCGVMECR 1616
Query: 342 GDEKSRVKDAENSAASMMLRALR 364
GD ++ K + +SAA +ML L+
Sbjct: 1617 GDHRADKKSSLDSAALVMLHELQ 1639
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 69/172 (40%), Gaps = 29/172 (16%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ EA+T ++S S +RLE +GD+ L A+S ++FL YP+ GQLS R+ +
Sbjct: 1063 LILEAITTLRCSESFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVCNST 1122
Query: 112 LARVAVKHGFYKFVRHSA--------------------AALDDKVKEFAEAVSQEDNTAV 151
L ++ ++R A +D ED V
Sbjct: 1123 LHKLGTDRSLQGYIRDGAFDPRRWVAPGQRSIRPVPCSCGVDALEVPLDGKFQTEDTKIV 1182
Query: 152 YGGSIK------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGL---LEP 194
G S K +AD VE++ A YV + M + G+ LEP
Sbjct: 1183 VGKSCDRGHRWMGSKTIADCVEALIGAYYVGGGLNAALHLMKWFGIDVELEP 1234
>gi|148907962|gb|ABR17101.1| unknown [Picea sitchensis]
Length = 685
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 128/241 (53%), Gaps = 14/241 (5%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E ++ YNF K LL EA H S+ + YQRLEF+GDA L +++Y++ YP + P
Sbjct: 225 LERLLGYNFSYKGLLLEAFAHPSFNEHNGGCYQRLEFLGDAVLDYIITSYLYSVYPDMKP 284
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVK---EFAEAVSQEDNTAVYG 153
G L+ +R+ ++ E A VAV+HG Y ++ + +L V +F +A+ D +
Sbjct: 285 GYLTDMRSMTVNNESFACVAVRHGLYMYLIQKSDSLSSAVTKYVDFMKALFTADRDSCDE 344
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
K PKVL DIVES A A+ +D FDL +W + +L+PIVT E L QPV L +
Sbjct: 345 PEPKCPKVLGDIVESFAGALVIDTGFDLDCVWKLMLNILQPIVTPETLCL--QPVRELSE 402
Query: 214 LCQKNGKQVDIKHWRKNRKN-------IASVYVDGSFVASASSEQKEIAKLNAAREALEK 266
+CQ + +D K N ++ V GS + + + AK A+++AL K
Sbjct: 403 VCQHHNLTLDYVKASKGNGNGYLVEAKVSGKKVSGSVGGTGTRTSIKDAKKVASKDALLK 462
Query: 267 L 267
L
Sbjct: 463 L 463
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EA+T + S +RLE +GDA L A+S +FL Y +LD GQL+ R+ I L +
Sbjct: 35 EAITTERCMEGFSLERLEVLGDAFLKYAVSRRLFLVYDKLDEGQLTKKRSNAIKNSNLYK 94
Query: 115 VAVKHGFYKFVR 126
A GF ++R
Sbjct: 95 RAKGKGFPAYIR 106
>gi|379987682|gb|AFD22621.1| dicer-like 4 protein [Nicotiana attenuata]
Length = 1622
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 124/235 (52%), Gaps = 5/235 (2%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD--STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+EN++ Y F +K LL +A H SY + YQRLEF+GDA L +++Y++ YP+L P
Sbjct: 1198 IENLLGYTFVHKGLLIQAFIHPSYNNHGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKP 1257
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQL+ LR+ +++ A VAV F+ + ++ L + + + + + D+
Sbjct: 1258 GQLTDLRSVSVNNTTFAVVAVHQSFHSHILCDSSGLRESITRYVNFIGRPDSMKRLSEEP 1317
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
PK L D+VES AI +D FDL W I L+P+++ LQ P+ L +LCQ
Sbjct: 1318 SCPKALGDLVESCMGAILLDTGFDLNXAWRIMLSFLKPVMSFTRLQLNPK--RELHELCQ 1375
Query: 217 KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSM 271
G + +K+ K + V+G V+ A+S I K AAR A +++ S+
Sbjct: 1376 SYGWHLKFLASKKDSKYLVEAKVNGENVSEAASALN-INKKAAARMAAQQVHSSL 1429
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 27/149 (18%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EALT + S +RLE +GDA L A+ +VFL Y D GQL+ R+ ++ L
Sbjct: 1010 EALTTEKCNEPFSLERLEVLGDAFLKFAVGRHVFLTYNAFDEGQLTRRRSNIVNNSYLYT 1069
Query: 115 VAVKHGFYKFVRHSAAALDDKVKEFAEA------VSQEDNTAVYG--GSIK--------- 157
+AV++ F+R + D +A +++ +++G GS+
Sbjct: 1070 IAVRNNLQAFIRDQSF---DPYHFYAVGRPCPVICNKQTEKSIHGQCGSVTDGAKTEVRC 1126
Query: 158 -------APKVLADIVESIAAAIYVDIDF 179
K +ADIVE++ A VD F
Sbjct: 1127 SKCHQWLRKKTIADIVEALVGAFVVDSGF 1155
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 292 AAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFM--SAVQIATTDGVLFITGDEKSRVK 349
+AK LHE+C W P ++ K+ GPSH K+F V+I T V+ G +++ K
Sbjct: 1540 SAKSILHEVCAANCWKPPRFECCKETGPSHLKEFTFRVVVEIEETSRVIESCGAPRAKKK 1599
Query: 350 DAENSAASMMLRALRESTYL 369
DA AA L L+ Y+
Sbjct: 1600 DAAEDAAEGALWFLKHEGYM 1619
>gi|397529815|gb|AFO53518.1| dicer-like protein 4 [Solanum lycopersicum]
Length = 1620
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 128/238 (53%), Gaps = 5/238 (2%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQ 93
V +E ++ Y+F +K LL +A H SY YQRLEF+GDA L +++Y++ YP+
Sbjct: 1192 VLGIERLLGYSFIHKGLLIQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLITSYLYSVYPK 1251
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
L PGQL+ LR+ +++ A VAV+ F+ + ++ L + + + + + D+T +
Sbjct: 1252 LKPGQLTDLRSISVNNNTFAVVAVRQSFHSHILCDSSDLRESITRYVNFIGRPDSTRGWV 1311
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
S PK L D+VES AI +D FDL + W I L+P+++ LQ P L++
Sbjct: 1312 KSHLVPKALGDLVESCMGAILLDTGFDLNRAWQIILSFLKPVMSFTRLQL--NPTRELYE 1369
Query: 214 LCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSM 271
LCQ G + +K+ + V+G V++A+S I K +A R A + + S+
Sbjct: 1370 LCQSFGWNLKFLPSKKDGNFLVEARVNGENVSAAASALN-INKKSAQRMAAQIVCSSL 1426
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFM--SAVQIATTDGVLFITGDEKSRV 348
E+AK +LHE+C W P ++ K+ GPSH K+F V+I T V+ G+ +++
Sbjct: 1537 ESAKSRLHEICAANCWKPPLFECCKETGPSHLKEFTFRVLVEIEETSRVIESYGEAQAKK 1596
Query: 349 KDAENSAASMMLRALRESTYL 369
KDA AA L L++ YL
Sbjct: 1597 KDAAEHAAEGALWFLKQEGYL 1617
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 23/147 (15%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EALT + +S S +RLE +GDA L A+ ++FL + D GQL+ R+ ++ L
Sbjct: 1007 EALTTENCHESFSLERLEVLGDAFLKFAVGRHLFLLHDAFDEGQLTRKRSNAVNNSNLYM 1066
Query: 115 VAVKHGFYKFVRHSAAALD-------------DKVKE---------FAEAVSQEDNTAVY 152
VA+K ++R + D +K E + + E + Y
Sbjct: 1067 VAIKKNLQAYIRDQSFEPDHFYVVGRPCPVTCNKQTEKNIHGLCGSGTDGIKTEVRCSKY 1126
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDF 179
++ K +ADIVE++ A VD F
Sbjct: 1127 HHWLRK-KTIADIVEALVGAFVVDSGF 1152
>gi|449453061|ref|XP_004144277.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Cucumis sativus]
Length = 1359
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 193/393 (49%), Gaps = 55/393 (13%)
Query: 19 LKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIG 75
+ A L S P + E A +E+ I Y+F K LL EA+TH+S + + YQRLEF+G
Sbjct: 967 ITSASLRSCPLGDTEIAT--LESKIGYDFAVKGLLLEAVTHTSDQEIGVNYCYQRLEFLG 1024
Query: 76 DAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDK 135
D+ L L ++ + + Y +DPG+L+ LR+A+++ E A+VAV+ + ++H + L +
Sbjct: 1025 DSVLDLLITWHYYQNYSDIDPGELTDLRSASVNNENFAQVAVRRNLQQHLQHCSGLLMSQ 1084
Query: 136 VKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195
+ E+ + +S+ +T K PKVL D+VESIA AI +D +L ++W I++ LL P
Sbjct: 1085 ITEYVKYLSESQDTGKPLHGNKGPKVLGDMVESIAGAILIDTKLNLDEVWKIYKPLLTPF 1144
Query: 196 VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYV---DGSFVASASSEQK 252
VT ++L+ P+ L +LC G + K RK A + + D + +
Sbjct: 1145 VTPDKLEL--PPLRELIELCDSLGYFIKDKCTRKGETFHAELRLQLQDSLLIGEGYERTR 1202
Query: 253 EIAKLNAAREALEKL------------------------AQSMP--VNC--DVCE----- 279
+ A+ AA L +L A +P VNC D C+
Sbjct: 1203 KAARGEAAHRLLAQLETRGISYSRSGSKKRKQNPSHDESAMVLPSSVNCSTDACDPNVET 1262
Query: 280 -IFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKK-----FMSAVQIAT 333
+ I+ K + L ELC K + Y+++ + G +K+ F+S + +
Sbjct: 1263 PVIGPINLK--KGGPRSTLFELCKKLLY---WYRVQIEIGEGLEKRKGFNSFLSNITLQI 1317
Query: 334 TD-GVLFITGDEKSRVKDAENSAASMMLRALRE 365
+ G + G+ ++ K + +SA+ +ML+ L++
Sbjct: 1318 PNAGYVECEGEARADKKSSFDSASLVMLQELQQ 1350
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 66/164 (40%), Gaps = 30/164 (18%)
Query: 43 INYNFKN----KRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
INY+ + L+ EALT ++ S +RLE +GD+ L A+S ++FL +P+ GQ
Sbjct: 776 INYHSNSLGISSSLILEALTTLGSCENFSLERLELLGDSVLKYAVSCHLFLKFPEKHEGQ 835
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSA--------------------AALDDKVKE 138
LS R I L + K G ++R SA +D
Sbjct: 836 LSSRRQQVICNATLHALGTKCGLQGYIRDSAFDPRRWVAPGQCTNRPVPCKCGVDTVEVP 895
Query: 139 FAEAVSQEDNTAVYGGSIK------APKVLADIVESIAAAIYVD 176
+ ED V G K +AD E++ A YVD
Sbjct: 896 LHDKFCTEDPKVVLGKCCDKGHRWVVSKTIADCAEALIGAYYVD 939
>gi|302794558|ref|XP_002979043.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii]
gi|300153361|gb|EFJ20000.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii]
Length = 1686
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 113/177 (63%), Gaps = 5/177 (2%)
Query: 15 DYRLLKEAMLTSLPS---PEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDST-SYQR 70
D LL A SLP+ ++ ++ +E+ + Y F+N+ LL EA+TH+S + YQR
Sbjct: 1468 DIGLLASARQASLPAESFQHLQASLESLEHKLQYKFQNRSLLVEAITHASQPNCLLCYQR 1527
Query: 71 LEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAA 130
LEF+GD L +S ++F +P L PG L+ LR+A ++ + AR+ V+HG ++ ++H +
Sbjct: 1528 LEFLGDGVLDFLVSRHLFETHPGLPPGTLTDLRSAAVNNKWFARLVVRHGLHQHLQHGSV 1587
Query: 131 ALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI 187
LD ++++F + V ++ + + + + APKVL D++ESI AI+VD +FDL++LW +
Sbjct: 1588 ELDCEIRKFVQNVKEKPDASCF-EDLSAPKVLGDLLESITGAIFVDTNFDLERLWRV 1643
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EA+T + SY+ LE +GD+ L ++ +FL Y + GQLS R+ L +
Sbjct: 1312 EAITSKKCHEEFSYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRSRATCNAALYQ 1371
Query: 115 VAVKHGFYKFVR 126
+A G +++R
Sbjct: 1372 LAKSSGIAEYIR 1383
>gi|413933739|gb|AFW68290.1| hypothetical protein ZEAMMB73_539070 [Zea mays]
Length = 707
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 129/237 (54%), Gaps = 10/237 (4%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E +++Y+F + LL EALTH SY + YQRLEF+GDA L ++Y + YP+
Sbjct: 457 LELLLDYSFNDPSLLMEALTHGSYQIAGTTPCYQRLEFLGDAVLDHIFTDYFYHQYPECT 516
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG-- 153
P L+ LR+A+++ A AVK G +K V HS++AL ++ ++ + Q + +G
Sbjct: 517 PELLTDLRSASVNNSCYAHAAVKAGLHKHVLHSSSALHKRMADYLDKFEQSFSGPSHGWE 576
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
I PKVL D+VESIA AIY+D D +W + +LEP+VT + LQ PV L +
Sbjct: 577 AGISLPKVLGDVVESIAGAIYIDAKHDKGVVWRSMKRILEPLVTPDTLQN--DPVKELQE 634
Query: 214 LCQKNGKQVDIKHWRKNRKN--IASVYVDG-SFVASASSEQKEIAKLNAAREALEKL 267
C G ++ R N + +A V +G ++ A+ + K AK AA L L
Sbjct: 635 FCDSKGYTLEYTVTRDNGVSSVVAEVRTEGTTYKATRTGFSKLDAKKLAASSVLRDL 691
>gi|212723814|ref|NP_001131630.1| uncharacterized protein LOC100192986 [Zea mays]
gi|194692090|gb|ACF80129.1| unknown [Zea mays]
Length = 365
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 129/237 (54%), Gaps = 10/237 (4%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E +++Y+F + LL EALTH SY + YQRLEF+GDA L ++Y + YP+
Sbjct: 115 LELLLDYSFNDPSLLMEALTHGSYQIAGTTPCYQRLEFLGDAVLDHIFTDYFYHQYPECT 174
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG-- 153
P L+ LR+A+++ A AVK G +K V HS++AL ++ ++ + Q + +G
Sbjct: 175 PELLTDLRSASVNNSCYAHAAVKAGLHKHVLHSSSALHKRMADYLDKFEQSFSGPSHGWE 234
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
I PKVL D+VESIA AIY+D D +W + +LEP+VT + LQ PV L +
Sbjct: 235 AGISLPKVLGDVVESIAGAIYIDAKHDKGVVWRSMKRILEPLVTPDTLQN--DPVKELQE 292
Query: 214 LCQKNGKQVDIKHWRKNRKN--IASVYVDG-SFVASASSEQKEIAKLNAAREALEKL 267
C G ++ R N + +A V +G ++ A+ + K AK AA L L
Sbjct: 293 FCDSKGYTLEYTVTRDNGVSSVVAEVRTEGTTYKATRTGFSKLDAKKLAASSVLRDL 349
>gi|357115872|ref|XP_003559709.1| PREDICTED: endoribonuclease Dicer homolog 2a-like [Brachypodium
distachyon]
Length = 1402
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 128/244 (52%), Gaps = 10/244 (4%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E I+ YNFK+ LL EALTH SY + YQRLEF+GDA L ++ Y + YP+
Sbjct: 1147 LEIILGYNFKDPLLLIEALTHGSYQIAGPTACYQRLEFLGDAVLDHLVTVYYYNTYPECT 1206
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG-- 153
P L+ LR+A+++ A +VK G K + HS+ L K+ + E Q +G
Sbjct: 1207 PALLTDLRSASVNNNCYAHASVKAGLNKHILHSSTELHRKMAYYLENFGQAFTGPSHGWE 1266
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
I PKVL D++ESIA AIY+D +D + +W + LLEP+ T E +++ PV L +
Sbjct: 1267 AGIGLPKVLGDVIESIAGAIYLDSKYDKEMVWRSMKPLLEPLATPETVER--DPVKELQE 1324
Query: 214 LCQKN--GKQVDIKHWRKNRKNIASVYVDGS-FVASASSEQKEIAKLNAAREALEKLAQS 270
C + + H +A V V+G+ + A+ S K +A+ A + LE L +
Sbjct: 1325 FCDRRSYSRSYTKTHEGGVSSVVAEVQVEGTIYSATRSGRDKTVAQKLAVKSLLEDLKAA 1384
Query: 271 MPVN 274
N
Sbjct: 1385 AAAN 1388
>gi|41469333|gb|AAS07189.1| putative ribonuclease III, 5'-partial (with alternative splicing)
[Oryza sativa Japonica Group]
Length = 1017
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 126/239 (52%), Gaps = 14/239 (5%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS---TSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E ++ Y F + LL EALTH SY S + YQRLEF+GDA L + Y + YP
Sbjct: 771 LEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCT 830
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG-- 153
P L+ LR+A+++ A AVK G K + HS++ L K+ + E Q YG
Sbjct: 831 PELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGWE 890
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
I PKVL D++ESIA AIY+D D + +W + LLEP+ T E + +P PV L +
Sbjct: 891 AGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETI--EPDPVKGLQE 948
Query: 214 LCQKNGKQVDIKHWRKNRKNIASVYV-----DGSFVASASSEQKEIAKLNAAREALEKL 267
C + + I + + + ++SV + ++ A+ S K +AK A++ L+ L
Sbjct: 949 FCDR--RSFKITYEKNHVDGVSSVIARVKAGETTYSATKSGPCKLVAKKLASKAVLKDL 1005
>gi|218184775|gb|EEC67202.1| hypothetical protein OsI_34085 [Oryza sativa Indica Group]
Length = 1093
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 189/384 (49%), Gaps = 35/384 (9%)
Query: 15 DYRLLKEAMLTS--LPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQ 69
D +LL+E + L S + + +E + YNF K LL EA+TH S + YQ
Sbjct: 704 DMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQ 763
Query: 70 RLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSA 129
RLEF+GD+ L L L+ +++ + +DPG+L+ LR+A +S E A+ V++ + ++H +
Sbjct: 764 RLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGS 823
Query: 130 AALDDKVKEFAEA---VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM 186
L +++ E+ + +++ + + K PKVL DI+ESIA A+++D DF++ +W
Sbjct: 824 GILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFLDTDFNVDMVWE 883
Query: 187 IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNI-ASVYVDGSFVA 245
IF LL P++T ++L P L +LC G ++ K K I S+ + +
Sbjct: 884 IFEPLLSPLITPDKLAL--PPYRELLELCSHIGCFLNSKCTSKGEVIIEMSLQLRDELLV 941
Query: 246 SASSEQK-------EIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDE------KFEIEA 292
+ ++ +++ A ++ +L+ S + + E + + K E
Sbjct: 942 AQGHDRNKKRAKAKAASRILADLKSGTQLSYSDLNDYHILEGLSSVKKEVVLPLKMEKGG 1001
Query: 293 AKQKLHELCGKKKWPKPSYK---------IEKDEGPSHD-KKFMSAVQIATTDG-VLFIT 341
+ L +LC +WP P ++ I D + + F+S + + D +
Sbjct: 1002 PRSALFKLCKILQWPMPEFEFVEQRFRTPIVMDGATTTNFNSFVSTITLHIPDATTITFQ 1061
Query: 342 GDEKSRVKDAENSAASMMLRALRE 365
G+ ++ K A++SA+ MML L+E
Sbjct: 1062 GERRTDKKSAQDSASLMMLHKLQE 1085
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EA+T ++ S +RLE +GD+ L + +FL YP GQLS +R+ + L +
Sbjct: 537 EAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNATLHK 596
Query: 115 VAVKHGFYKFVRHSA 129
+ +VR +A
Sbjct: 597 HGIWRSLQGYVRDNA 611
>gi|115453927|ref|NP_001050564.1| Os03g0583900 [Oryza sativa Japonica Group]
gi|122246906|sp|Q10HL3.1|DCL2A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2a; AltName:
Full=Dicer-like protein 2a; Short=OsDCL2a
gi|50399921|gb|AAT76309.1| putative RNA helicase/RNAseIII protein, C-terminus truncated [Oryza
sativa Japonica Group]
gi|108709535|gb|ABF97330.1| Type III restriction enzyme, res subunit family protein, expressed
[Oryza sativa Japonica Group]
gi|113549035|dbj|BAF12478.1| Os03g0583900 [Oryza sativa Japonica Group]
gi|215701504|dbj|BAG92928.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 1410
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 126/239 (52%), Gaps = 14/239 (5%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS---TSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E ++ Y F + LL EALTH SY S + YQRLEF+GDA L + Y + YP
Sbjct: 1164 LEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCT 1223
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG-- 153
P L+ LR+A+++ A AVK G K + HS++ L K+ + E Q YG
Sbjct: 1224 PELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGWE 1283
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
I PKVL D++ESIA AIY+D D + +W + LLEP+ T E + +P PV L +
Sbjct: 1284 AGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETI--EPDPVKGLQE 1341
Query: 214 LCQKNGKQVDIKHWRKNRKNIASVYV-----DGSFVASASSEQKEIAKLNAAREALEKL 267
C + + I + + + ++SV + ++ A+ S K +AK A++ L+ L
Sbjct: 1342 FCDR--RSFKITYEKNHVDGVSSVIARVKAGETTYSATKSGPCKLVAKKLASKAVLKDL 1398
>gi|218193216|gb|EEC75643.1| hypothetical protein OsI_12390 [Oryza sativa Indica Group]
Length = 1318
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 126/239 (52%), Gaps = 14/239 (5%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS---TSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E ++ Y F + LL EALTH SY S + YQRLEF+GDA L + Y + YP
Sbjct: 1072 LEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCT 1131
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG-- 153
P L+ LR+A+++ A AVK G K + HS++ L K+ + E Q YG
Sbjct: 1132 PELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGWE 1191
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
I PKVL D++ESIA AIY+D D + +W + LLEP+ T E + +P PV L +
Sbjct: 1192 AGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETI--EPDPVKGLQE 1249
Query: 214 LCQKNGKQVDIKHWRKNRKNIASVYV-----DGSFVASASSEQKEIAKLNAAREALEKL 267
C + + I + + + ++SV + ++ A+ S K +AK A++ L+ L
Sbjct: 1250 FCDR--RSFKITYEKNHVDGVSSVIARVKAGETTYSATKSGPCKLVAKKLASKAVLKDL 1306
>gi|356532427|ref|XP_003534774.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max]
Length = 1421
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 116/198 (58%), Gaps = 7/198 (3%)
Query: 30 PEMEDAVFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNY 86
PE V ++E+ + Y+F + LL EALTH SY YQRLEF+GD+ L ++ +
Sbjct: 1172 PEKLLNVRFLESQLKYSFHDHSLLVEALTHGSYMLPEVPRCYQRLEFLGDSVLDYLITWH 1231
Query: 87 VFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE 146
++ YP + PGQL+ +RAA+++ + A A+KHG +K V H++ L + +
Sbjct: 1232 LYNEYPGMSPGQLTDMRAASVNNDCYAWSAIKHGLHKHVLHASQELHKHIAVTLNNFDKL 1291
Query: 147 DNTAVYGGSIKA--PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQ 204
+++ +G +A PKVL DI+ES+A AI VD F+ + +W R LLEP+VT E L+
Sbjct: 1292 SSSSTFGYESEASPPKVLGDIIESLAGAILVDSGFNKEVVWQSIRPLLEPLVTPETLKL- 1350
Query: 205 PQPVTLLFKLCQKNGKQV 222
P+ L +LCQK ++
Sbjct: 1351 -HPIRELNELCQKRSYKI 1367
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EA+T ++ Y+ LE +GD+ L A S +F Y G LS+ R IS L +
Sbjct: 1011 EAITTKRCNEAFHYESLETLGDSFLKYAASQQLFKTYKNHHEGLLSVKREKIISNAALCK 1070
Query: 115 VAVKHGFYKFVR------HSAAALDDKVK--EFAEAVSQEDNTAVYGGSIKAPKVLADIV 166
+ G F+R H+ DK + + E V + V+G K++AD+V
Sbjct: 1071 LGCSSGLPGFIRNEPFDPHAWTIPGDKPESLKLEELVIKGKKIYVHGKRKLNRKIIADVV 1130
Query: 167 ESIAAA 172
E++ A
Sbjct: 1131 EALIGA 1136
>gi|168039663|ref|XP_001772316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676303|gb|EDQ62787.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1275
Score = 130 bits (327), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 137/241 (56%), Gaps = 15/241 (6%)
Query: 33 EDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLA 90
E V +E ++NY F+NK LL EALTH+S + YQRLEF+GDA L ++ + +
Sbjct: 696 EAKVSELEILLNYKFQNKGLLVEALTHASCRRHSGDCYQRLEFLGDAVLDFLITKHFYAN 755
Query: 91 YPQL--DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN 148
L DPG L+ LR+A ++ E ARVAV+H + ++ H+++ L +V ++ + +
Sbjct: 756 SANLKRDPGLLTDLRSAAVNNECFARVAVRHNLHLYLLHNSSDLAARVDKYVHGSTTDAQ 815
Query: 149 TAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPV 208
+ G PKVL+D+VES+A A+++D + L +W +F+ LL+P+VT L+ +P+
Sbjct: 816 CHGWNGD-SGPKVLSDLVESLAGAVFLDSGYKLDTVWNVFKQLLKPLVTPATLRL--EPI 872
Query: 209 TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268
L++LCQ ++ +++K R+ + G F + + E K+ R+ EK A
Sbjct: 873 RELWELCQT--EKFGEPNYKKKREAM------GDFDMTVTVELKDETITGVGRKPDEKSA 924
Query: 269 Q 269
+
Sbjct: 925 R 925
Score = 44.7 bits (104), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ EA+T S +S S + LE +GDA L +++S +FL + +LD G+LS R I +
Sbjct: 513 LMLEAITTSKCQESFSLEGLELLGDAFLEVSVSERLFLLHNRLDEGELSKRRTNLICNKM 572
Query: 112 LARVAVKHGF 121
L R+ + G
Sbjct: 573 LERLGRERGI 582
>gi|357140713|ref|XP_003571908.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog
3b-like [Brachypodium distachyon]
Length = 1414
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 115/203 (56%), Gaps = 8/203 (3%)
Query: 43 INYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQL 99
+ YNF K LL EA+TH S +S YQRLEF+GD L L ++ Y+++ + +DPG+L
Sbjct: 1089 LKYNFSVKGLLLEAITHPSAQESGVDYCYQRLEFLGDCVLDLLITQYLYVTHTDVDPGEL 1148
Query: 100 SLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE---AVSQEDNTAVYGGSI 156
+ LR+A +S E A+ V++ + ++H + L +++ E+ ++N + +
Sbjct: 1149 TDLRSALVSNENFAQAVVRNNIHSHLQHGSGVLLEQITEYVRFNLECQGKENEFLQHSTC 1208
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
K PKVL DI+ESIA AI++D DF++ LW I LL P++T E L P L +LC
Sbjct: 1209 KVPKVLGDIMESIAGAIFIDTDFNVDLLWNIVEPLLSPMITPENLAL--PPYRELLELCS 1266
Query: 217 KNGKQVDIKHWRKNRKNIASVYV 239
G ++ K+ K + I + V
Sbjct: 1267 HLGYFINSKYSSKGEEVIIEMSV 1289
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EA+T ++ S +RLE +GD+ L + +FL YP G LS +R+ + KL +
Sbjct: 892 EAITTLRCCETFSLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVCNAKLHK 951
Query: 115 VAVKHGFYKFVRHSA 129
V ++R SA
Sbjct: 952 HGVWRSLQGYIRDSA 966
>gi|224109196|ref|XP_002315119.1| dicer-like protein [Populus trichocarpa]
gi|222864159|gb|EEF01290.1| dicer-like protein [Populus trichocarpa]
Length = 1408
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 136/244 (55%), Gaps = 11/244 (4%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYP 92
V Y+E+++NY+F++ LL EALTH SY + YQRLEF+GDA L ++ +++ YP
Sbjct: 1155 VRYLESLLNYSFRDPSLLVEALTHGSYMLPEIPSCYQRLEFLGDAVLDYLITMHLYKEYP 1214
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ PG L+ LR+A+++ + A+ AVK +K + H++ L + E AE + + +
Sbjct: 1215 GMSPGLLTDLRSASVNNDCYAQSAVKGDLHKHILHTSQDLHKHIVETAEIFQKSSLGSTF 1274
Query: 153 G--GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL 210
G PKVL D++ES+A AI VD ++ + ++ R LLEP++T ++ P
Sbjct: 1275 GWESETSFPKVLGDVIESLAGAILVDSGYNKEIVFQSIRPLLEPLITPATVRL--HPARE 1332
Query: 211 LFKLCQKNGKQVDIKHWRKNRKNIASVYVDG----SFVASASSEQKEIAKLNAAREALEK 266
L +LCQK N +N + V G +F +A++ K+ AK A++E L+
Sbjct: 1333 LSELCQKQHFDYKKSVVSYNGRNASITIVVGANGVTFKHTATAADKKTAKKLASKEVLKS 1392
Query: 267 LAQS 270
L +S
Sbjct: 1393 LKES 1396
>gi|356533095|ref|XP_003535104.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max]
Length = 1414
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 115/198 (58%), Gaps = 7/198 (3%)
Query: 30 PEMEDAVFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNY 86
PE V ++E+ +NY+F ++ LL EA+TH SY YQRLEF+GD+ L ++ +
Sbjct: 1139 PEKLVNVSFLESQLNYSFHDRSLLVEAVTHGSYMLPEVPRCYQRLEFLGDSVLDYLITWH 1198
Query: 87 VFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE 146
++ YP + PGQL+ +R+A+++ + A A+KHG +K V H++ L V +
Sbjct: 1199 LYNKYPGMTPGQLTDMRSASVNNDCYAWSAIKHGLHKHVLHASQELHMHVSATLNKFDKL 1258
Query: 147 DNTAVYG--GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQ 204
+ + +G PKVL DIVES+A AI VD ++ + +W R LLEP+VT E L+
Sbjct: 1259 SSLSTFGYEAETSLPKVLGDIVESLAGAILVDSGYNKEVVWQSIRPLLEPLVTPETLKL- 1317
Query: 205 PQPVTLLFKLCQKNGKQV 222
P+ L +LCQK ++
Sbjct: 1318 -HPIRELNELCQKRSYKI 1334
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EA+T ++ Y+ LE +GD+ L A S +F Y G LSL R IS L +
Sbjct: 978 EAITTKRCKEAFHYESLETLGDSFLKYAASQQLFKTYHNHHEGLLSLKREKIISNAALCK 1037
Query: 115 VAVKHGFYKFVR------HSAAALDDKVKEF--AEAVSQEDNTAVYGGSIKAPKVLADIV 166
+ G F+R ++ DK + F E V++ V G K++AD+V
Sbjct: 1038 LGCSSGLPGFIRNEPFDPNTWIIPGDKPRSFKLKELVAKGKTIYVSGKRKLRQKIVADVV 1097
Query: 167 ESIAAA 172
E++ A
Sbjct: 1098 EALIGA 1103
>gi|189908862|gb|ACE60552.1| dicer-like protein 2 [Brassica rapa]
Length = 1392
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 146/262 (55%), Gaps = 15/262 (5%)
Query: 22 AMLTSLPSPEMEDAV--FYVENIINYNFKNKRLLEEALTHSSYTDS---TSYQRLEFIGD 76
M+ PS + E V Y+E+++NY FK+K LL EALTH SY YQRLEF+GD
Sbjct: 1132 TMIQREPSIQAEKLVNVRYMESLLNYKFKDKSLLVEALTHGSYMIPEIPRCYQRLEFLGD 1191
Query: 77 AALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDK- 135
+ L ++ +++ YP L PG L+ +R+A+++ E A+VAVK +K V H++ L
Sbjct: 1192 SVLDYLITKHLYGEYPNLSPGLLTDMRSASVNNECYAQVAVKSNLHKHVLHASHDLHKHI 1251
Query: 136 ---VKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
V EF E +S ++ + I PKVL D++ES+A AI+VD ++ + ++ + LL
Sbjct: 1252 SRTVSEF-ERLSSVQSSFGWESEIAFPKVLGDVIESLAGAIHVDSGYNKEVVFACIKPLL 1310
Query: 193 EPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDG---SFVASASS 249
++T E ++ PV L +LCQK ++ +N + V V+ SF +A +
Sbjct: 1311 GCMITPETVKL--HPVRELTELCQKAQFELSKVKGFENGEAFFPVEVEAKEMSFAHTARA 1368
Query: 250 EQKEIAKLNAAREALEKLAQSM 271
K++AK A +E L L +S+
Sbjct: 1369 FDKKMAKKLAYKEVLNSLKKSL 1390
>gi|242033791|ref|XP_002464290.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor]
gi|241918144|gb|EER91288.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor]
Length = 1385
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 130/239 (54%), Gaps = 14/239 (5%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E +++YNF + LL EALTH SY + YQRLEF+GDA L ++Y + YP+
Sbjct: 1135 LELMLDYNFSDPSLLLEALTHGSYQIAGTTACYQRLEFLGDAVLDHIFTDYFYHQYPECT 1194
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG-- 153
P L+ LR+A+++ A AVK G +K + HS++AL K+ ++ + Q + +G
Sbjct: 1195 PELLTDLRSASVNNSCYAHAAVKAGLHKHILHSSSALHKKMADYLDKFEQSFSGPSHGWE 1254
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
I PKVL D++ESIA AIY+D D + +W + LLEP+ T + L+ PV L +
Sbjct: 1255 AGICLPKVLGDVIESIAGAIYIDTKNDKKVVWRKMKRLLEPLATPDTLEI--DPVKELHE 1312
Query: 214 LCQKNGKQVDIKHWRKNRKNIASVYVD-----GSFVASASSEQKEIAKLNAAREALEKL 267
C + K IK+ + SV V+ ++ A+ + K AK AA+ L+ +
Sbjct: 1313 FC--DPKTCSIKYTVAREDRVTSVAVEVQTKGTTYKATRTGLTKRDAKKLAAKSVLKDM 1369
>gi|296081735|emb|CBI20740.3| unnamed protein product [Vitis vinifera]
Length = 1688
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 115/184 (62%), Gaps = 5/184 (2%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E+ I Y F K LL EA+TH++ + YQRLEF+GD+ L + ++ +++ ++ +D
Sbjct: 1269 LESKIGYEFSVKGLLLEAITHATEQELGVGYCYQRLEFLGDSVLDVLITWHLYQSHRDID 1328
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
PG+L+ LR+A+++ E A+VAV+ + ++H + L ++KE+A+ +S D+ S
Sbjct: 1329 PGELTDLRSASVNNESFAQVAVRRNLQQHLQHCSGLLLGQIKEYAKYLSGSDDVPNPLQS 1388
Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLC 215
K PK L D+VESIA AI +D +L ++W IF+ LL PIVT ++L+ P+ L +LC
Sbjct: 1389 TKGPKALGDLVESIAGAILIDTKLNLNEVWRIFKPLLSPIVTPDKLEL--PPLRELNELC 1446
Query: 216 QKNG 219
G
Sbjct: 1447 DSLG 1450
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 69/172 (40%), Gaps = 29/172 (16%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ EA+T ++S S +RLE +GD+ L A+S ++FL YP+ GQLS R+ +
Sbjct: 1073 LILEAITTLRCSESFSMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVCNST 1132
Query: 112 LARVAVKHGFYKFVRHSA--------------------AALDDKVKEFAEAVSQEDNTAV 151
L ++ ++R A +D ED V
Sbjct: 1133 LHKLGTDRSLQGYIRDGAFDPRRWVAPGQRSIRPVPCSCGVDALEVPLDGKFQTEDTKIV 1192
Query: 152 YGGSIK------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGL---LEP 194
G S K +AD VE++ A YV + M + G+ LEP
Sbjct: 1193 VGKSCDRGHRWMGSKTIADCVEALIGAYYVGGGLNAALHLMKWFGIDVELEP 1244
>gi|414871004|tpg|DAA49561.1| TPA: hypothetical protein ZEAMMB73_299457, partial [Zea mays]
Length = 1199
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 129/235 (54%), Gaps = 11/235 (4%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E + YNF K LL EA++H S + YQRLEF+GD+ L L ++ +++ + +D
Sbjct: 871 LEAKLKYNFSVKGLLLEAISHPSVQELGVDYCYQRLEFLGDSVLDLLITQHLYATHTDVD 930
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEA---VSQEDNTAVY 152
PG+L+ LR+A++S E A+ V++ + ++H + L ++V E+ + ++N +
Sbjct: 931 PGELTDLRSASVSNENFAQAVVRNNIHNHLQHGSGILLEQVTEYVRSNLEYHGKENQFLQ 990
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
+ KAPKVL DI+ESI AI++D++FD+ +W I LL P++T ++L P L
Sbjct: 991 QATCKAPKVLGDIMESITGAIFIDVNFDVDLVWKIVEPLLSPMITPDKLAL--PPYRELL 1048
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYV---DGSFVASASSEQKEIAKLNAAREAL 264
+LC G ++ K + + I + V D +A + AK NAA L
Sbjct: 1049 ELCSHLGCFIESKCTSEGEELIIEMKVQLRDEQLIAQGHDRNGKTAKANAAARIL 1103
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ EA+T +S S +RLE +GD+ L + +FL YP G LS +R+ +
Sbjct: 673 LILEAITTLRCCESFSLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVCNAT 732
Query: 112 LARVAVKHGFYKFVRHSA 129
L + + ++R +A
Sbjct: 733 LHKHGIWQSLQGYIRDAA 750
>gi|414871006|tpg|DAA49563.1| TPA: hypothetical protein ZEAMMB73_299457, partial [Zea mays]
Length = 1517
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 129/235 (54%), Gaps = 11/235 (4%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E + YNF K LL EA++H S + YQRLEF+GD+ L L ++ +++ + +D
Sbjct: 1189 LEAKLKYNFSVKGLLLEAISHPSVQELGVDYCYQRLEFLGDSVLDLLITQHLYATHTDVD 1248
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEA---VSQEDNTAVY 152
PG+L+ LR+A++S E A+ V++ + ++H + L ++V E+ + ++N +
Sbjct: 1249 PGELTDLRSASVSNENFAQAVVRNNIHNHLQHGSGILLEQVTEYVRSNLEYHGKENQFLQ 1308
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
+ KAPKVL DI+ESI AI++D++FD+ +W I LL P++T ++L P L
Sbjct: 1309 QATCKAPKVLGDIMESITGAIFIDVNFDVDLVWKIVEPLLSPMITPDKLAL--PPYRELL 1366
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYV---DGSFVASASSEQKEIAKLNAAREAL 264
+LC G ++ K + + I + V D +A + AK NAA L
Sbjct: 1367 ELCSHLGCFIESKCTSEGEELIIEMKVQLRDEQLIAQGHDRNGKTAKANAAARIL 1421
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ EA+T +S S +RLE +GD+ L + +FL YP G LS +R+ +
Sbjct: 991 LILEAITTLRCCESFSLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVCNAT 1050
Query: 112 LARVAVKHGFYKFVRHSA 129
L + + ++R +A
Sbjct: 1051 LHKHGIWQSLQGYIRDAA 1068
>gi|414871005|tpg|DAA49562.1| TPA: hypothetical protein ZEAMMB73_299457 [Zea mays]
Length = 1440
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 129/235 (54%), Gaps = 11/235 (4%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E + YNF K LL EA++H S + YQRLEF+GD+ L L ++ +++ + +D
Sbjct: 1189 LEAKLKYNFSVKGLLLEAISHPSVQELGVDYCYQRLEFLGDSVLDLLITQHLYATHTDVD 1248
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEA---VSQEDNTAVY 152
PG+L+ LR+A++S E A+ V++ + ++H + L ++V E+ + ++N +
Sbjct: 1249 PGELTDLRSASVSNENFAQAVVRNNIHNHLQHGSGILLEQVTEYVRSNLEYHGKENQFLQ 1308
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
+ KAPKVL DI+ESI AI++D++FD+ +W I LL P++T ++L P L
Sbjct: 1309 QATCKAPKVLGDIMESITGAIFIDVNFDVDLVWKIVEPLLSPMITPDKLAL--PPYRELL 1366
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYV---DGSFVASASSEQKEIAKLNAAREAL 264
+LC G ++ K + + I + V D +A + AK NAA L
Sbjct: 1367 ELCSHLGCFIESKCTSEGEELIIEMKVQLRDEQLIAQGHDRNGKTAKANAAARIL 1421
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ EA+T +S S +RLE +GD+ L + +FL YP G LS +R+ +
Sbjct: 991 LILEAITTLRCCESFSLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVCNAT 1050
Query: 112 LARVAVKHGFYKFVRHSA 129
L + + ++R +A
Sbjct: 1051 LHKHGIWQSLQGYIRDAA 1068
>gi|222613035|gb|EEE51167.1| hypothetical protein OsJ_31945 [Oryza sativa Japonica Group]
Length = 1570
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 110/415 (26%), Positives = 193/415 (46%), Gaps = 66/415 (15%)
Query: 15 DYRLLKEAMLTS--LPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQ 69
D +LL+E + L S + + +E + YNF K LL EA+TH S + YQ
Sbjct: 1150 DMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQ 1209
Query: 70 RLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSA 129
RLEF+GD+ L L L+ +++ + +DPG+L+ LR+A +S E A+ V++ + ++H +
Sbjct: 1210 RLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGS 1269
Query: 130 AALDDKVKEFAEA---VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM 186
L +++ E+ + +++ + + K PKVL DI+ESIA A+++D DF++ +W
Sbjct: 1270 GILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWE 1329
Query: 187 IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYV---DGSF 243
IF LL P++T ++L P L +LC G ++ K K + I + + D
Sbjct: 1330 IFEPLLSPLITPDKLAL--PPYRELLELCSHIGCFLNSKCTSKGEEVIIEMSLQLRDELL 1387
Query: 244 VASASSEQKEIAKLNAAREALEKLAQSMPVNCDVC-------EI---------------- 280
VA K+ AK AA L L Q ++ C +I
Sbjct: 1388 VAQGHDRNKKRAKAKAASRILADLKQQQGLSIKQCLSKAKQLDIVTSDLQFDLTSSGTQL 1447
Query: 281 -FDDIDE------------------KFEIEAAKQKLHELCGKKKWPKPSYKI--EKDEGP 319
+ D+++ K E + L +LC +WP P ++ ++ P
Sbjct: 1448 SYSDLNDYHILEGLSSVKKEVVLPLKMEKGGPRSALFKLCKILQWPMPEFEFVEQRFRTP 1507
Query: 320 --------SHDKKFMSAVQIATTDG-VLFITGDEKSRVKDAENSAASMMLRALRE 365
++ F+S + + D + G+ ++ K A++SA+ MML L+E
Sbjct: 1508 IVMDGATTTNFNSFVSTITLHIPDATTITFQGERRTDKKSAQDSASLMMLHKLQE 1562
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ EA+T ++ S +RLE +GD+ L + +FL YP GQLS +R+ +
Sbjct: 980 LILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNAT 1039
Query: 112 LARVAVKHGFYKFVRHSA 129
L + + +VR +A
Sbjct: 1040 LHKHGIWRSLQGYVRDNA 1057
>gi|115292171|emb|CAK32533.1| putative dicer-like protein [Mucor circinelloides]
Length = 1529
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 106/174 (60%), Gaps = 7/174 (4%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST--SYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
V I+ Y F+N+ L+ EALTH+S T+S+ YQRLEF+GDA L ++NY+F Y P
Sbjct: 1254 VSRILGYEFQNEALIAEALTHASVTNSSVPCYQRLEFLGDAVLDFCVTNYLFEKYHTAPP 1313
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE-AVSQEDNTAVYGGS 155
G L LR ++++ + L+ + ++ G + +RH + VK+F E V+ +D Y +
Sbjct: 1314 GTLHDLRKSSVNNDILSVLCIQLGLHVHIRHFSTTFPSAVKQFQELVVASQDEKGEYWLN 1373
Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI----VTLEELQQQP 205
PKVL+D+VES+ A++VD F+L + +F LL+P+ +++E +QQ P
Sbjct: 1374 FNPPKVLSDVVESLIGAVFVDAGFNLDPVLGLFDRLLKPLLDDHISIEAMQQHP 1427
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EA T SS YQRLEF+GD+ L S YVF+ P + +L+ R IS L +
Sbjct: 1066 EAFTASSAGLEKDYQRLEFLGDSVLKFITSTYVFVTLPISNEFELTESRMRMISNTALFK 1125
Query: 115 VAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK---APKVLADIVESIAA 171
A++ Y+++ + L + + ++D+ + + K LAD+VES
Sbjct: 1126 SAIQLRLYEYI--CSQNLPRRFYRPPNYLCKDDSAEMIKSLTYHKLSDKTLADVVESTLG 1183
Query: 172 AIYV 175
A Y+
Sbjct: 1184 ASYL 1187
>gi|251764789|sp|Q7XD96.2|DCL3B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3b; AltName:
Full=Dicer-like protein 3b; Short=OsDCL3b
Length = 1637
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 109/416 (26%), Positives = 193/416 (46%), Gaps = 69/416 (16%)
Query: 15 DYRLLKEAMLTS--LPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQ 69
D +LL+E + L S + + +E + YNF K LL EA+TH S + YQ
Sbjct: 1218 DMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQ 1277
Query: 70 RLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSA 129
RLEF+GD+ L L L+ +++ + +DPG+L+ LR+A +S E A+ V++ + ++H +
Sbjct: 1278 RLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGS 1337
Query: 130 AALDDKVKEFAEA---VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM 186
L +++ E+ + +++ + + K PKVL DI+ESIA A+++D DF++ +W
Sbjct: 1338 GILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWE 1397
Query: 187 IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYV---DGSF 243
IF LL P++T ++L P L +LC G ++ K K + I + + D
Sbjct: 1398 IFEPLLSPLITPDKLAL--PPYRELLELCSHIGCFLNSKCTSKGEEVIIEMSLQLRDELL 1455
Query: 244 VASASSEQ----------KEIAKLN----AAREALEKLAQSMPVNCDVCEIFD------- 282
VA + +A L + ++ L K Q V D+ FD
Sbjct: 1456 VAQGHDRNKKRAKAKAASRILADLKQQGLSIKQCLSKAKQLDIVTSDL--QFDLTSSGTQ 1513
Query: 283 ----DIDE------------------KFEIEAAKQKLHELCGKKKWPKPSYKI--EKDEG 318
D+++ K E + L +LC +WP P ++ ++
Sbjct: 1514 LSYSDLNDYHILEGLSSVKKEVVLPLKMEKGGPRSALFKLCKILQWPMPEFEFVEQRFRT 1573
Query: 319 P--------SHDKKFMSAVQIATTDG-VLFITGDEKSRVKDAENSAASMMLRALRE 365
P ++ F+S + + D + G+ ++ K A++SA+ MML L+E
Sbjct: 1574 PIVMDGATTTNFNSFVSTITLHIPDATTITFQGERRTDKKSAQDSASLMMLHKLQE 1629
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ EA+T ++ S +RLE +GD+ L + +FL YP GQLS +R+ +
Sbjct: 1048 LILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNAT 1107
Query: 112 LARVAVKHGFYKFVRHSA 129
L + + +VR +A
Sbjct: 1108 LHKHGIWRSLQGYVRDNA 1125
>gi|359476600|ref|XP_002269915.2| PREDICTED: endoribonuclease Dicer homolog 2-like [Vitis vinifera]
Length = 1394
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 138/245 (56%), Gaps = 13/245 (5%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYP 92
V Y+E+I+NY+F++ LL EALTH SY YQRLEF+GDA L ++ +++ YP
Sbjct: 1149 VSYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYP 1208
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ PG L+ LR+A+++ + A+ AVK ++ + HS+ L + + + +
Sbjct: 1209 GMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVESTF 1268
Query: 153 GGSIKA--PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL 210
G ++ PKVL D++ES+A AI VD D++ + ++ R LLEP++T E ++ P
Sbjct: 1269 GWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKL--HPARE 1326
Query: 211 LFKLCQKNGKQVDIKHWRKNRKNIASVYV----DGSFVASASSEQKEIAKLNAAREALEK 266
L +LCQK + DIK ++ ASV + +G+ S+ K A A++E L+
Sbjct: 1327 LGELCQK--EHYDIKRVVVSQNGKASVTIEVEANGAKHKHTSTSDKRTATKLASKEVLKS 1384
Query: 267 LAQSM 271
L +S+
Sbjct: 1385 LKESI 1389
>gi|297735235|emb|CBI17597.3| unnamed protein product [Vitis vinifera]
Length = 1340
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 138/245 (56%), Gaps = 13/245 (5%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYP 92
V Y+E+I+NY+F++ LL EALTH SY YQRLEF+GDA L ++ +++ YP
Sbjct: 1095 VSYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYP 1154
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ PG L+ LR+A+++ + A+ AVK ++ + HS+ L + + + +
Sbjct: 1155 GMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGNFDKLPVESTF 1214
Query: 153 GGSIKA--PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL 210
G ++ PKVL D++ES+A AI VD D++ + ++ R LLEP++T E ++ P
Sbjct: 1215 GWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKL--HPARE 1272
Query: 211 LFKLCQKNGKQVDIKHWRKNRKNIASVYV----DGSFVASASSEQKEIAKLNAAREALEK 266
L +LCQK + DIK ++ ASV + +G+ S+ K A A++E L+
Sbjct: 1273 LGELCQK--EHYDIKRVVVSQNGKASVTIEVEANGAKHKHTSTSDKRTATKLASKEVLKS 1330
Query: 267 LAQSM 271
L +S+
Sbjct: 1331 LKESI 1335
>gi|297832974|ref|XP_002884369.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp.
lyrata]
gi|297330209|gb|EFH60628.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp.
lyrata]
Length = 2033
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 136/244 (55%), Gaps = 14/244 (5%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYP 92
V Y+E+++NY+F++K LL EALTH SY YQRLEF+GD+ L ++ +++ YP
Sbjct: 1794 VGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYP 1853
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
L PG L+ +R+A+++ E A VAVK +K + H++ L + Q + +
Sbjct: 1854 CLSPGLLTDMRSASVNNECYALVAVKENLHKHILHASHVLHKHISRTVSEFEQSSLQSTF 1913
Query: 153 G--GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL 210
G I PKVL D++ES+A AI+VD ++ + ++ + LL ++T E ++ PV
Sbjct: 1914 GWECDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKL--HPVRE 1971
Query: 211 LFKLCQKNGKQVDIKHWRKNRKNIASVYVDG---SFVASASSEQKEIAKLNAAREALEKL 267
L +LCQK+ ++ + N +V V SF +A + K++AK A +E L L
Sbjct: 1972 LTELCQKSQFELS----KAKDFNYFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLL 2027
Query: 268 AQSM 271
+S+
Sbjct: 2028 KKSL 2031
>gi|449442659|ref|XP_004139098.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Cucumis sativus]
Length = 1393
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 138/247 (55%), Gaps = 11/247 (4%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYP 92
V ++E+++ Y F ++ LL EA+TH SY YQRLEF+GD+ L A++ +++ YP
Sbjct: 1146 VGHLESLLKYTFNDRSLLLEAMTHGSYMLPEIPRCYQRLEFLGDSVLDYAITVHLYNKYP 1205
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ P L+ +R+A++S + +R A+K +K + H + L + + + A Y
Sbjct: 1206 GMTPELLTDMRSASVSNDCYSRTALKAQLHKSILHCSHDLHKHISSAVQNFETLSSEATY 1265
Query: 153 G--GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL 210
G I PKVL D++ES+A AIYVD +D + ++ R LLEP+V+ E L++ P+
Sbjct: 1266 GWESEISFPKVLGDVIESLAGAIYVDSGYDKEIVFRSIRPLLEPLVSPETLKKHPR--RE 1323
Query: 211 LFKLCQK-NGKQVDIKHWRKNRKNIASVYVDGS---FVASASSEQKEIAKLNAAREALEK 266
L +LCQK N K R N ++ +V V+ + F + S +E + A++E L+
Sbjct: 1324 LNELCQKENYKLKKTVTSRVNGRSYVTVEVEVNGRIFKHTEISLDRETGEKVASKEVLKS 1383
Query: 267 LAQSMPV 273
L ++ P+
Sbjct: 1384 LKEAYPM 1390
>gi|391345092|ref|XP_003746827.1| PREDICTED: endoribonuclease Dicer-like [Metaseiulus occidentalis]
Length = 1446
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 134/246 (54%), Gaps = 13/246 (5%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTD--STSYQRLEFIGDAALGLALSNYVFLAY 91
D + VE+I+ Y FKN+ L EA+TH SY + + SY+RLEF+GDA + +S ++F
Sbjct: 1180 DVMSRVESILGYRFKNRLYLLEAITHQSYNNRVTHSYERLEFLGDAVIDYLVSCFIFTND 1239
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV 151
P L PGQL+ +R+A + + A++ K G + + H + L + + EAV
Sbjct: 1240 PHLGPGQLTSVRSALVCNNQFAQIVTKAGLSRCLLHRSPLLFRMMTSYTEAVEIGRPCDS 1299
Query: 152 YGGS--------IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ G + APK D++ES+ A+++D + D + W +FRGL+ V LE L+
Sbjct: 1300 FIGDDETEDADLVDAPKPFGDLMESLIGAVFIDSNQDFSRTWDVFRGLMGDRVLLETLKD 1359
Query: 204 QPQ-PVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262
P+ P+ +L ++ +G + R++++ ++ V G SA S +K+IAKL A+
Sbjct: 1360 NPRNPIAVLEEMF-PSGCEYSKAIIREDKRIEMTLTVAGRNF-SAVSRKKKIAKLLLAKI 1417
Query: 263 ALEKLA 268
AL +
Sbjct: 1418 ALRAFS 1423
>gi|255547506|ref|XP_002514810.1| ATP binding protein, putative [Ricinus communis]
gi|223545861|gb|EEF47364.1| ATP binding protein, putative [Ricinus communis]
Length = 1388
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 144/254 (56%), Gaps = 15/254 (5%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSN 85
+PE + ++E+++ Y+F++ LL EALTH SY YQRLEF+GD+ L ++
Sbjct: 1136 NPEKYVNICHLESLLKYSFRDPCLLVEALTHGSYMLPEIPRCYQRLEFLGDSVLDYLITV 1195
Query: 86 YVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ 145
+++ YP + PG L+ +R+A+++ + A+ AV+ G +K++ H++ L + +
Sbjct: 1196 HLYEKYPGMSPGLLTDMRSASVNNDCYAQSAVREGLHKYILHASQKLHKDIVSTVANCKE 1255
Query: 146 EDNTAVYG--GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ + +G I PKVL D++ES+A AI+VD ++ + ++ R LLEP++T E ++
Sbjct: 1256 FSSESTFGWESEISFPKVLGDVIESLAGAIFVDSGYNKEVVFNSIRPLLEPLITPETIRL 1315
Query: 204 QPQPVTLLFKLCQKNGKQVDIKH---WRKNRKNIASVYVDGS---FVASASSEQKEIAKL 257
P L +LCQK + D + R N + +V V+ + F ++++ +++ AK
Sbjct: 1316 --HPTRELTELCQK--QHFDRRKPVVSRNNGMSCVTVEVEANGVVFKHTSAAAERKTAKR 1371
Query: 258 NAAREALEKLAQSM 271
A++E L L S+
Sbjct: 1372 LASKEVLRALKDSL 1385
>gi|379987678|gb|AFD22619.1| dicer-like 2 protein [Nicotiana attenuata]
Length = 1403
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 137/244 (56%), Gaps = 13/244 (5%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYP 92
V Y+E++++Y F + LL EALTH SY YQRLEF+GDA L A++ +++ YP
Sbjct: 1158 VRYLESLLDYKFHDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYAVTAHLYFKYP 1217
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
L PG ++ LR+A+++ E A+ AVK G +K + H++ L ++ + D + +
Sbjct: 1218 GLSPGFITDLRSASVNNECYAQAAVKAGLHKHILHASQDLQRQIVNTVLNFEKLDPASTF 1277
Query: 153 G--GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL 210
G PKVL D++ES+A AI+VD F+ ++ R LLEP++T + ++ PV
Sbjct: 1278 GWESETTFPKVLGDVIESLAGAIFVDSGFNKDVVFQSVRTLLEPLITPDTVKL--HPVRE 1335
Query: 211 LFKLCQKNG--KQVDIKHWRKNRKNIASVYVDGSFVA---SASSEQKEIAKLNAAREALE 265
L +LC + G K+ ++ R+N +V V+ V+ + S K++A+ A + L+
Sbjct: 1336 LSELCDQKGYIKKKNVVS-RENGVAYITVEVEADGVSHKFTCSERDKKMAEKVACKNVLK 1394
Query: 266 KLAQ 269
L +
Sbjct: 1395 LLKE 1398
>gi|147833654|emb|CAN77284.1| hypothetical protein VITISV_043738 [Vitis vinifera]
Length = 1296
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 137/245 (55%), Gaps = 13/245 (5%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYP 92
V Y+E+I+NY+F++ LL E+LTH SY YQRLEF+GDA L ++ +++ YP
Sbjct: 1051 VSYLESILNYSFRDPSLLVESLTHGSYMLPEIPRCYQRLEFLGDAVLDYLMTMHLYHKYP 1110
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ PG L+ LR+A+++ + A+ AVK ++ + HS+ L + + + +
Sbjct: 1111 GMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRHIVVTVGBFDKLPXESTF 1170
Query: 153 GGSIKA--PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL 210
G ++ PKVL D++ES+A AI VD D++ + ++ R LLEP++T E ++ P
Sbjct: 1171 GWESESSFPKVLGDVIESLAGAILVDSDYNKEVVFQSIRPLLEPLITPETVKL--HPARE 1228
Query: 211 LFKLCQKNGKQVDIKHWRKNRKNIASVYV----DGSFVASASSEQKEIAKLNAAREALEK 266
L +LCQK + IK ++ ASV + +G+ S+ K A A++E L+
Sbjct: 1229 LXELCQK--EHYXIKRVVVSQNGKASVTIEVEANGAKHKHTSTSDKRTAXKLASKEVLKS 1286
Query: 267 LAQSM 271
L +S+
Sbjct: 1287 LKESI 1291
>gi|115437482|ref|NP_001043306.1| Os01g0551100 [Oryza sativa Japonica Group]
gi|75105855|sp|Q5JK90.1|RTL1_ORYSJ RecName: Full=Ribonuclease 3-like protein 1; AltName:
Full=Ribonuclease III-like protein 1; Short=RNase
III-like protein 1
gi|57900069|dbj|BAD88131.1| unknown protein [Oryza sativa Japonica Group]
gi|57900480|dbj|BAD87969.1| unknown protein [Oryza sativa Japonica Group]
gi|113532837|dbj|BAF05220.1| Os01g0551100 [Oryza sativa Japonica Group]
gi|215695480|dbj|BAG90671.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 256
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 134/233 (57%), Gaps = 25/233 (10%)
Query: 44 NYNFKNKR--LLEEALTHSSY-----TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
Y+F++ LLE+ALTHS + +QRLEF+GDAALGLA + + P LD
Sbjct: 30 GYSFRDGGALLLEDALTHSVHPRDEAGGRARHQRLEFLGDAALGLAFATIFYRDDPGLDQ 89
Query: 97 GQLSLLRAANISTEKLARVAV-KHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
G L++LR+AN+ST+KLARVAV + + R++ A D +V F ++V G
Sbjct: 90 GDLTVLRSANVSTQKLARVAVRRRLYPLLRRYNCAPQDHEVSRFTKSV----EGPYSGDP 145
Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLC 215
I+ P+VLADIVE+I A+Y+D DL+ L + + L EPI+T + L + P+ ++L +L
Sbjct: 146 IEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKLLCEPIITKKALLEDPE--SMLNELG 203
Query: 216 QKNGKQVDIK--HWRKNRKNIASVYVDGSFVASASS-----EQKEIAKLNAAR 261
++ + ++IK WRK +A+V DG A +S + E+ KL R
Sbjct: 204 GEHREDLEIKILAWRK----VANVVDDGREQAITTSGLGNGSEDEVGKLRTIR 252
>gi|297804712|ref|XP_002870240.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata]
gi|297316076|gb|EFH46499.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata]
Length = 214
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 92/142 (64%), Gaps = 4/142 (2%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST--SYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E I+NY FK+KRLL +A T +SY D SY+ LE +GD+ L +++ + YP+ P
Sbjct: 33 LEKILNYKFKDKRLLVQAFTDASYVDDKCDSYEILELLGDSILNMSIIDEFIKLYPKESP 92
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRA N+ TEKLARVAVKH Y+++RH L++++ EF EA+ E G +
Sbjct: 93 GPLTKLRAVNVDTEKLARVAVKHQLYRYLRHKKPLLEEQILEFVEAM--EKYPLHSNGLL 150
Query: 157 KAPKVLADIVESIAAAIYVDID 178
K PKVLADIVES A++ D +
Sbjct: 151 KVPKVLADIVESTIGALFRDCN 172
>gi|297610684|ref|NP_001064898.2| Os10g0485600 [Oryza sativa Japonica Group]
gi|18087887|gb|AAL59041.1|AC087182_24 putative RNA helicase [Oryza sativa Japonica Group]
gi|31432753|gb|AAP54346.1| Type III restriction enzyme, res subunit family protein, expressed
[Oryza sativa Japonica Group]
gi|255679506|dbj|BAF26812.2| Os10g0485600 [Oryza sativa Japonica Group]
Length = 1458
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 121/213 (56%), Gaps = 10/213 (4%)
Query: 15 DYRLLKEAMLTS--LPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQ 69
D +LL+E + L S + + +E + YNF K LL EA+TH S + YQ
Sbjct: 1081 DMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQ 1140
Query: 70 RLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSA 129
RLEF+GD+ L L L+ +++ + +DPG+L+ LR+A +S E A+ V++ + ++H +
Sbjct: 1141 RLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGS 1200
Query: 130 AALDDKVKEFAEA---VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM 186
L +++ E+ + +++ + + K PKVL DI+ESIA A+++D DF++ +W
Sbjct: 1201 GILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWE 1260
Query: 187 IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNG 219
IF LL P++T ++L P L +LC G
Sbjct: 1261 IFEPLLSPLITPDKLAL--PPYRELLELCSHIG 1291
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EA+T ++ S +RLE +GD+ L + +FL YP GQLS +R+ + L +
Sbjct: 914 EAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNATLHK 973
Query: 115 VAVKHGFYKFVRHSA 129
+ +VR +A
Sbjct: 974 HGIWRSLQGYVRDNA 988
>gi|242076428|ref|XP_002448150.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor]
gi|241939333|gb|EES12478.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor]
Length = 698
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 128/238 (53%), Gaps = 8/238 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E +I Y FK+K LL +A H S+ + YQR+EF+GDA L +++Y++ AYP L P
Sbjct: 255 LEELIGYTFKHKGLLLQAFVHPSFNKHSGGCYQRMEFLGDAVLDYLMASYLYSAYPDLKP 314
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQL+ L++ ++ A VAVK +K++ + +L + +F V+ +
Sbjct: 315 GQLTDLKSLALNNNSFAYVAVKKSIHKYLIKDSKSLTAAINKFQNYVNLSSSEKDLLEEP 374
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
PKVL DIVES A+ +D F+L +W + LL+PI++ P+ L ++CQ
Sbjct: 375 TCPKVLGDIVESCVGAVLLDSGFNLNHVWKLMLMLLKPILSF--CGMHIDPMRELREICQ 432
Query: 217 KNGKQVDIKHWRKNRKNI---ASVYVDGSFVA-SASSEQKEIAKLNAAREALEKLAQS 270
NG ++ + ++ V +DG ++ +A++ + A+ AA+EAL KL +
Sbjct: 433 YNGFELGLPKPTEDNGEFHVKVEVNIDGKMISCTAANRNSKDARKVAAQEALLKLKNN 490
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 21/146 (14%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EALT + S +RLE +GDA L + + F++Y LD GQL+ R+ +S L
Sbjct: 67 EALTTERCLERISLERLEVLGDAFLKYVVGRHNFISYEGLDEGQLTRRRSDIVSNSNLYE 126
Query: 115 VAVKHGFYKFVR--HSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAP------------- 159
++++ ++R H + + V D A P
Sbjct: 127 LSIRRNLQVYIRDQHFEPTQFFALGRPCKVVCNPDREATLHPKNIDPDRRENCNLRCTKS 186
Query: 160 ------KVLADIVESIAAAIYVDIDF 179
K +AD+VES+ A V+ F
Sbjct: 187 HHWLHRKTIADVVESLLGAFLVECGF 212
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAV--QIATTDGVLF-ITGDEKSR 347
+ A+ L+ELC W P +++ K EGPSH +KF V QI T L D K +
Sbjct: 610 KTARSFLYELCAANYWKPPDFELCKGEGPSHLRKFTCKVLIQITGTSATLLECYSDPKLQ 669
Query: 348 VKDAENSAASMMLRALRESTYL 369
K A AA L L++ YL
Sbjct: 670 KKAAHEHAAEGALWYLKQLGYL 691
>gi|125526376|gb|EAY74490.1| hypothetical protein OsI_02382 [Oryza sativa Indica Group]
Length = 256
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 135/230 (58%), Gaps = 27/230 (11%)
Query: 44 NYNFKNKR--LLEEALTHSSY-----TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
Y+F++ LLE+ALTHS + +QRLEF+GDAALGLA + + P LD
Sbjct: 30 GYSFRDGGALLLEDALTHSVHPRDEAGGRARHQRLEFLGDAALGLAFATIFYRDDPGLDQ 89
Query: 97 GQLSLLRAANISTEKLARVAV-KHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
G L++LR+AN+ST+KLARVAV + + R++ A D +V F ++V +Y G
Sbjct: 90 GDLTVLRSANVSTQKLARVAVRRRLYPLLRRYNCAPQDHEVSRFTKSVE-----GLYSGD 144
Query: 156 -IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL 214
I+ P+VLADIVE+I A+Y+D DL+ L + + L EPI+T + L + P+ ++L +L
Sbjct: 145 PIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKLLCEPIITKKALLEDPE--SMLNEL 202
Query: 215 CQKNGKQVDIK--HWRKNRKNIASVYVDGSFVASASS-----EQKEIAKL 257
++ + ++IK WRK +A+V DG A +S + E+ KL
Sbjct: 203 GGEHREDLEIKILAWRK----VANVVDDGREQAITTSGLGNGSEDEVGKL 248
>gi|224101241|ref|XP_002312197.1| dicer-like protein [Populus trichocarpa]
gi|222852017|gb|EEE89564.1| dicer-like protein [Populus trichocarpa]
Length = 1468
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 136/246 (55%), Gaps = 15/246 (6%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYP 92
V Y+E+++NY+F + LL EALTH SY YQRLEF+GDA L ++ +++ YP
Sbjct: 1216 VRYLESLLNYSFNDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITLHMYKEYP 1275
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ PG L+ LR+A+++ + A AVK G + + H++ L + + + + + +
Sbjct: 1276 GMSPGLLTDLRSASVNNDCYALSAVKVGLDRHILHASHDLHKHIVATVKKIQEFSLESTF 1335
Query: 153 G--GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL 210
G PKVL D++ES+A AI VD ++ + ++ R LLEP++T E L+ QPV
Sbjct: 1336 GWESETAFPKVLGDVIESLAGAILVDSGYNKEVVFESIRPLLEPLITPETLRL--QPVRE 1393
Query: 211 LFKLCQKNGKQVDIKH---WRKNRKNIASVYVDGS---FVASASSEQKEIAKLNAAREAL 264
L +LCQ+ + D K R R ++ V+ + F +A+ K AK A++E L
Sbjct: 1394 LNELCQR--QHFDYKKPIVSRNGRNASVTIEVEANGLIFKHTATVADKTTAKKLASKEVL 1451
Query: 265 EKLAQS 270
+ L +S
Sbjct: 1452 KALKES 1457
Score = 37.7 bits (86), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 13/129 (10%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EA+T + ++ + + LE +GD+ L A S +F Y G LS + IS L R
Sbjct: 1048 EAITTNKCQENFNLESLETLGDSFLKYAASQQLFKIYQNHHEGLLSFKKDKIISNAALCR 1107
Query: 115 VAVKHGFYKFVRHSAAALDDKV---------KEFA--EAVSQEDNTAVYGGSIKAPKVLA 163
H F+R+ + D K+ +F E +S+ + G K +A
Sbjct: 1108 RGCNHKLQGFIRNE--SFDPKLWIIPGGKLGSDFLSEEPLSKGRKIYIRGRRKVKSKTIA 1165
Query: 164 DIVESIAAA 172
D+VE++ A
Sbjct: 1166 DVVEALIGA 1174
>gi|356509849|ref|XP_003523657.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Glycine max]
Length = 1671
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 125/217 (57%), Gaps = 10/217 (4%)
Query: 12 TVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSY 68
++ D + ++ T LP E + +E I Y F K LL EA+TH S + Y
Sbjct: 1248 SLVDEAITAASLRTCLPK---ESEIASLEKKIGYEFSVKGLLLEAITHLSEKELGIGCCY 1304
Query: 69 QRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHS 128
+RLEF+GD+ L L ++ +++ ++ +DPG L+ LR+A+++ + A+VAV+H ++ + HS
Sbjct: 1305 ERLEFLGDSVLDLLITWHLYQSHTDIDPGVLTDLRSASVNNDNFAQVAVRHNLHQHLLHS 1364
Query: 129 AAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIF 188
+ L ++ E+ + +S+ D ++ SI APK L D+VESI AI +D L ++W +F
Sbjct: 1365 SGLLLSQISEYVKVISESDPRSL--PSISAPKALGDVVESIVGAILIDTKLSLDQVWNVF 1422
Query: 189 RGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIK 225
LL PIVT ++L+ P L +LC G V +K
Sbjct: 1423 YSLLSPIVTPDKLEL--PPFRELNELCDSLGYFVKVK 1457
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 27/158 (17%)
Query: 45 YNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRA 104
+N ++ +LE +LT ++S S +RLE +GD+ L +S ++FL YP+ GQLS R+
Sbjct: 1070 FNIRSSLILE-SLTTLRCSESFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSARRS 1128
Query: 105 ANISTEKLARVAVKHGFYKFVRHSA--------------------AALDDKVKEFAEAVS 144
+ + L ++ ++R SA L+
Sbjct: 1129 SAVCNSTLHKLGTDRKLQGYIRDSAFEPRRWVAPGQRSIHLVCCDCGLETLEVPLDAKFH 1188
Query: 145 QEDNTAVY------GGSIKAPKVLADIVESIAAAIYVD 176
ED V G K +AD VE++ A YVD
Sbjct: 1189 TEDPKVVVGKFCDRGHCWMCSKTIADCVEALIGAYYVD 1226
>gi|334187796|ref|NP_001190348.1| dicer-like protein 4 [Arabidopsis thaliana]
gi|332005448|gb|AED92831.1| dicer-like protein 4 [Arabidopsis thaliana]
Length = 1688
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 19/243 (7%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+EN ++Y F +K LL +A H SY YQRLEF+GDA L +++Y F +P+L P
Sbjct: 1281 LENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKP 1340
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQL+ LR+ +++ E LA VAV +F+ + L + ++++ ++ +
Sbjct: 1341 GQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEGP 1400
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
+ PKVL D+VES A+++D F+L +W + L+P+ L LQ P+ L +LCQ
Sbjct: 1401 RCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQI--SPIKELIELCQ 1458
Query: 217 KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA-----REALEKLAQSM 271
++ +R+ I++ DG+F + +A RE +K AQ M
Sbjct: 1459 S---------YKWDRE-ISATKKDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLM 1508
Query: 272 PVN 274
N
Sbjct: 1509 ITN 1511
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 29/151 (19%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EALT + S +RLE +GDA L A+S ++FL + LD G+L+ R+ ++ L R
Sbjct: 1091 EALTTEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCR 1150
Query: 115 VAVKHGFYKFVRHSAAALDDKVKEFA----------EAVSQEDNT--------AVYGGSI 156
+A+K ++R A D + FA E S+E ++ G I
Sbjct: 1151 LAIKKNLQVYIRDQAL---DPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGEI 1207
Query: 157 KAP--------KVLADIVESIAAAIYVDIDF 179
+ K +AD+VE++ A VD F
Sbjct: 1208 RCSKGHHWLYKKTIADVVEALVGAFLVDSGF 1238
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDG---VLFITGDEKSR 347
+ AK LHE C W P ++ ++EGP H K F+ V + D L G+ ++
Sbjct: 1606 KTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNMTLECYGEARAT 1665
Query: 348 VKDAENSAASMMLRALRESTYLC 370
K A AA + L+ S +LC
Sbjct: 1666 KKGAAEHAAQAAIWCLKHSGFLC 1688
>gi|356518185|ref|XP_003527762.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Glycine max]
Length = 455
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 133/256 (51%), Gaps = 12/256 (4%)
Query: 32 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVF 88
+E + +E I Y F K LL EA+TH S + Y+RL+F+GD+ L L ++ +++
Sbjct: 181 IESDIASLEKKIEYEFSVKGLLLEAITHLSEKELGIGCCYERLKFLGDSVLDLLITWHLY 240
Query: 89 LAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN 148
++ +DPG L+ LR+A+++ + A+VAV+H ++ + HS+ L ++ E+ + +S+ D
Sbjct: 241 QSHTDIDPGVLADLRSASVNNDNFAQVAVRHNLHQHLLHSSGLLVSQILEYVKVISESDP 300
Query: 149 TAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPV 208
++ SI+APK L D+VESI I + L ++W +F LL PIVT ++L+ P
Sbjct: 301 RSL--PSIRAPKALGDVVESIVGPILIGTKLSLDQVWNVFYPLLSPIVTPDKLEL--PPF 356
Query: 209 TLLFKLCQKNGKQVDIKHWRKNRKNIASVYV-----DGSFVASASSEQKEIAKLNAAREA 263
L +LC G V +K + + V V + V K+ AK AA
Sbjct: 357 RELNELCDSLGHFVKVKENCEKMGSAMHVEVSVQLPNALLVREGKGPNKKTAKGEAAFHL 416
Query: 264 LEKLAQSMPVNCDVCE 279
L+ L CE
Sbjct: 417 LKDLENGKISAIQFCE 432
>gi|145358264|ref|NP_197532.3| dicer-like protein 4 [Arabidopsis thaliana]
gi|322510021|sp|P84634.2|DCL4_ARATH RecName: Full=Dicer-like protein 4
gi|73672051|gb|AAZ80387.1| dicer-like 4 [Arabidopsis thaliana]
gi|332005447|gb|AED92830.1| dicer-like protein 4 [Arabidopsis thaliana]
Length = 1702
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 19/243 (7%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+EN ++Y F +K LL +A H SY YQRLEF+GDA L +++Y F +P+L P
Sbjct: 1295 LENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKP 1354
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQL+ LR+ +++ E LA VAV +F+ + L + ++++ ++ +
Sbjct: 1355 GQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEGP 1414
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
+ PKVL D+VES A+++D F+L +W + L+P+ L LQ P+ L +LCQ
Sbjct: 1415 RCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQI--SPIKELIELCQ 1472
Query: 217 KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA-----REALEKLAQSM 271
++ +R+ I++ DG+F + +A RE +K AQ M
Sbjct: 1473 S---------YKWDRE-ISATKKDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLM 1522
Query: 272 PVN 274
N
Sbjct: 1523 ITN 1525
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 29/151 (19%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EALT + S +RLE +GDA L A+S ++FL + LD G+L+ R+ ++ L R
Sbjct: 1105 EALTTEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCR 1164
Query: 115 VAVKHGFYKFVRHSAAALDDKVKEFA----------EAVSQEDNT--------AVYGGSI 156
+A+K ++R A D + FA E S+E ++ G I
Sbjct: 1165 LAIKKNLQVYIRDQAL---DPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGEI 1221
Query: 157 KAP--------KVLADIVESIAAAIYVDIDF 179
+ K +AD+VE++ A VD F
Sbjct: 1222 RCSKGHHWLYKKTIADVVEALVGAFLVDSGF 1252
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDG---VLFITGDEKSR 347
+ AK LHE C W P ++ ++EGP H K F+ V + D L G+ ++
Sbjct: 1620 KTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNMTLECYGEARAT 1679
Query: 348 VKDAENSAASMMLRALRESTYLC 370
K A AA + L+ S +LC
Sbjct: 1680 KKGAAEHAAQAAIWCLKHSGFLC 1702
>gi|145338056|ref|NP_566199.4| protein dicer-like 2 [Arabidopsis thaliana]
gi|334185051|ref|NP_001189798.1| protein dicer-like 2 [Arabidopsis thaliana]
gi|322518659|sp|Q3EBC8.2|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName:
Full=Dicer-like protein 2; Short=AtDCL2
gi|332640403|gb|AEE73924.1| protein dicer-like 2 [Arabidopsis thaliana]
gi|332640405|gb|AEE73926.1| protein dicer-like 2 [Arabidopsis thaliana]
Length = 1388
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 134/249 (53%), Gaps = 24/249 (9%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYP 92
V Y+E+++NY+F++K LL EALTH SY YQRLEF+GD+ L ++ +++ YP
Sbjct: 1149 VGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYP 1208
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
L PG L+ +R+A+++ E A VAVK +K + +++ L + Q + +
Sbjct: 1209 CLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTF 1268
Query: 153 G--GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL 210
G I PKVL D++ES+A AI+VD ++ + ++ + LL ++T E ++ PV
Sbjct: 1269 GWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKL--HPVRE 1326
Query: 211 LFKLCQKNGKQVDIKHWR---KNRKNIASVYV-----DGSFVASASSEQKEIAKLNAARE 262
L +LCQK W+ K+ S V + SF +A + K++AK A +E
Sbjct: 1327 LTELCQK---------WQFELSKAKDFDSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 1377
Query: 263 ALEKLAQSM 271
L L S+
Sbjct: 1378 VLNLLKNSL 1386
>gi|251764794|sp|Q69LX2.2|DCL2B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2b; AltName:
Full=Dicer-like protein 2b; Short=OsDCL2b
Length = 1377
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 124/239 (51%), Gaps = 18/239 (7%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS---TSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E ++ Y F + LL EALTH SY S + YQRLEF+GDA L + Y + YP
Sbjct: 1135 LEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCT 1194
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG-- 153
P L+ LR+A+++ A AVK G K + HS++ L K+ + + Q YG
Sbjct: 1195 PELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYY---LGQSFTGPSYGWE 1251
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
I PKVL D++ESIA AIY+D D + +W + LLEP+ T E + +P PV L +
Sbjct: 1252 AGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETI--EPDPVKGLQE 1309
Query: 214 LCQKNGKQVDIKHWRKNRKN-----IASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
C + ++ + KN + IA V + ++ S ++AK A++ L+ L
Sbjct: 1310 FCDRRSFKIT---YEKNHVDGVSSVIARVKAGETTYSATKSGPCKLAKKLASKAVLKDL 1365
>gi|222625282|gb|EEE59414.1| hypothetical protein OsJ_11564 [Oryza sativa Japonica Group]
Length = 1371
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 124/239 (51%), Gaps = 18/239 (7%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS---TSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E ++ Y F + LL EALTH SY S + YQRLEF+GDA L + Y + YP
Sbjct: 1129 LEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCT 1188
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG-- 153
P L+ LR+A+++ A AVK G K + HS++ L K+ + + Q YG
Sbjct: 1189 PELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYY---LGQSFTGPSYGWE 1245
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
I PKVL D++ESIA AIY+D D + +W + LLEP+ T E + +P PV L +
Sbjct: 1246 AGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETI--EPDPVKGLQE 1303
Query: 214 LCQKNGKQVDIKHWRKNRKN-----IASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
C + ++ + KN + IA V + ++ S ++AK A++ L+ L
Sbjct: 1304 FCDRRSFKIT---YEKNHVDGVSSVIARVKAGETTYSATKSGPCKLAKKLASKAVLKDL 1359
>gi|50726394|dbj|BAD34005.1| CAF protein-like [Oryza sativa Japonica Group]
gi|51091635|dbj|BAD36404.1| CAF protein-like [Oryza sativa Japonica Group]
Length = 1375
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 124/239 (51%), Gaps = 18/239 (7%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS---TSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E ++ Y F + LL EALTH SY S + YQRLEF+GDA L + Y + YP
Sbjct: 1133 LEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCT 1192
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG-- 153
P L+ LR+A+++ A AVK G K + HS++ L K+ + + Q YG
Sbjct: 1193 PELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYY---LGQSFTGPSYGWE 1249
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
I PKVL D++ESIA AIY+D D + +W + LLEP+ T E + +P PV L +
Sbjct: 1250 AGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETI--EPDPVKGLQE 1307
Query: 214 LCQKNGKQVDIKHWRKNRKN-----IASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
C + ++ + KN + IA V + ++ S ++AK A++ L+ L
Sbjct: 1308 FCDRRSFKIT---YEKNHVDGVSSVIARVKAGETTYSATKSGPCKLAKKLASKAVLKDL 1363
>gi|296084589|emb|CBI25610.3| unnamed protein product [Vitis vinifera]
Length = 1623
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 139/269 (51%), Gaps = 16/269 (5%)
Query: 4 ESFTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYT 63
E+F + A ++ ++ A T +P+ +E ++ + F +K LL +A+ H SY
Sbjct: 1176 EAFQVINACISSTSYMQLASSTDVPA---------LEKLLGHEFLHKGLLLQAIVHPSYN 1226
Query: 64 --DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGF 121
YQRLEF+GDA L +++Y++ YP+L PGQ++ LR+ +++ + A VAV
Sbjct: 1227 KHGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQMTDLRSLSVNNKSFANVAVSRSL 1286
Query: 122 YKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDL 181
++F+ A++L + +K++ + + K PK L D+VES AI +D FDL
Sbjct: 1287 HEFLICDASSLSEAIKKYVDFIRTPTLDKDLHEGPKCPKALGDLVESCMGAILLDKGFDL 1346
Query: 182 QKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDG 241
W I +L+ I++ +LQ P+ L +LCQ + + ++ + V G
Sbjct: 1347 NHAWNIMLSILDRIMSFSDLQL--NPIRELQELCQHHNWDLQFPTSKQGGTFLVEAKVSG 1404
Query: 242 SFV---ASASSEQKEIAKLNAAREALEKL 267
+ ASA++ ++ A+ A+ + +KL
Sbjct: 1405 DDICTTASATNANRKDARRIASNQLFKKL 1433
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EALT + S +RLE +GDA L A+ +FL Y LD G+L+ R+ ++ L +
Sbjct: 1017 EALTTEKCLERFSLERLEVLGDAFLKFAVGRRLFLLYDALDEGELTRRRSNVVNNSNLFK 1076
Query: 115 VAVKHGFYKFVRHSA------AALDDKVKEFAEAVSQEDNTAVYGGSIKAP--------- 159
+AV+ ++R + AL + E +E A++ K P
Sbjct: 1077 LAVRRNLQVYIRDQSFDPGQFFALGHRCPRICE---KETEMAIHSRCGKTPTTEVRCSKC 1133
Query: 160 ------KVLADIVESIAAAIYVDIDFDLQKLWMIFRGL 191
K +AD+VE++ A VD F +++ + G+
Sbjct: 1134 HHWLHKKTIADVVEALVGAFIVDSGFKAATVFLKWIGI 1171
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 292 AAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDG---VLFITGDEKSRV 348
+ K +++E+C W PS++ K+EGPSH K F + + DG +L G KS
Sbjct: 1538 STKARMYEICAANYWKPPSFECCKEEGPSHLKLFTVKLTMKIEDGSGLLLECYGYPKSTK 1597
Query: 349 KDAENSAASMMLRALRESTYL 369
K A +SAA + L++ Y
Sbjct: 1598 KAAADSAAEGAIAYLKQEGYF 1618
>gi|359484756|ref|XP_002264486.2| PREDICTED: dicer-like protein 4 [Vitis vinifera]
Length = 1622
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 139/269 (51%), Gaps = 16/269 (5%)
Query: 4 ESFTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYT 63
E+F + A ++ ++ A T +P+ +E ++ + F +K LL +A+ H SY
Sbjct: 1175 EAFQVINACISSTSYMQLASSTDVPA---------LEKLLGHEFLHKGLLLQAIVHPSYN 1225
Query: 64 --DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGF 121
YQRLEF+GDA L +++Y++ YP+L PGQ++ LR+ +++ + A VAV
Sbjct: 1226 KHGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQMTDLRSLSVNNKSFANVAVSRSL 1285
Query: 122 YKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDL 181
++F+ A++L + +K++ + + K PK L D+VES AI +D FDL
Sbjct: 1286 HEFLICDASSLSEAIKKYVDFIRTPTLDKDLHEGPKCPKALGDLVESCMGAILLDKGFDL 1345
Query: 182 QKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDG 241
W I +L+ I++ +LQ P+ L +LCQ + + ++ + V G
Sbjct: 1346 NHAWNIMLSILDRIMSFSDLQL--NPIRELQELCQHHNWDLQFPTSKQGGTFLVEAKVSG 1403
Query: 242 SFV---ASASSEQKEIAKLNAAREALEKL 267
+ ASA++ ++ A+ A+ + +KL
Sbjct: 1404 DDICTTASATNANRKDARRIASNQLFKKL 1432
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 24/158 (15%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EALT + S +RLE +GDA L A+ +FL Y LD G+L+ R+ ++ L +
Sbjct: 1016 EALTTEKCLERFSLERLEVLGDAFLKFAVGRRLFLLYDALDEGELTRRRSNVVNNSNLFK 1075
Query: 115 VAVKHGFYKFVRHSA------AALDDKVKEFAEAVSQEDNTAVYGGSIKAP--------- 159
+AV+ ++R + AL + E +E A++ K P
Sbjct: 1076 LAVRRNLQVYIRDQSFDPGQFFALGHRCPRICE---KETEMAIHSRCGKTPTTEVRCSKC 1132
Query: 160 ------KVLADIVESIAAAIYVDIDFDLQKLWMIFRGL 191
K +AD+VE++ A VD F +++ + G+
Sbjct: 1133 HHWLHKKTIADVVEALVGAFIVDSGFKAATVFLKWIGI 1170
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 292 AAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDG---VLFITGDEKSRV 348
+ K +++E+C W PS++ K+EGPSH K F + + DG +L G KS
Sbjct: 1537 STKARMYEICAANYWKPPSFECCKEEGPSHLKLFTVKLTMKIEDGSGLLLECYGYPKSTK 1596
Query: 349 KDAENSAASMMLRALRESTYL 369
K A +SAA + L++ Y
Sbjct: 1597 KAAADSAAEGAIAYLKQEGYF 1617
>gi|145331748|ref|NP_001078101.1| protein dicer-like 2 [Arabidopsis thaliana]
gi|332640404|gb|AEE73925.1| protein dicer-like 2 [Arabidopsis thaliana]
Length = 1374
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 134/249 (53%), Gaps = 24/249 (9%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYP 92
V Y+E+++NY+F++K LL EALTH SY YQRLEF+GD+ L ++ +++ YP
Sbjct: 1135 VGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYP 1194
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
L PG L+ +R+A+++ E A VAVK +K + +++ L + Q + +
Sbjct: 1195 CLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTF 1254
Query: 153 G--GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL 210
G I PKVL D++ES+A AI+VD ++ + ++ + LL ++T E ++ PV
Sbjct: 1255 GWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKL--HPVRE 1312
Query: 211 LFKLCQKNGKQVDIKHWR---KNRKNIASVYV-----DGSFVASASSEQKEIAKLNAARE 262
L +LCQK W+ K+ S V + SF +A + K++AK A +E
Sbjct: 1313 LTELCQK---------WQFELSKAKDFDSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 1363
Query: 263 ALEKLAQSM 271
L L S+
Sbjct: 1364 VLNLLKNSL 1372
>gi|94450854|gb|ABF19797.1| dicer-like 2 spliceform 1 [Arabidopsis thaliana]
Length = 1386
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 134/249 (53%), Gaps = 24/249 (9%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYP 92
V Y+E+++NY+F++K LL EALTH SY YQRLEF+GD+ L ++ +++ YP
Sbjct: 1147 VGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYP 1206
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
L PG L+ +R+A+++ E A VAVK +K + +++ L + Q + +
Sbjct: 1207 CLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTF 1266
Query: 153 G--GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL 210
G I PKVL D++ES+A AI+VD ++ + ++ + LL ++T E ++ PV
Sbjct: 1267 GWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKL--HPVRE 1324
Query: 211 LFKLCQKNGKQVDIKHWR---KNRKNIASVYV-----DGSFVASASSEQKEIAKLNAARE 262
L +LCQK W+ K+ S V + SF +A + K++AK A +E
Sbjct: 1325 LTELCQK---------WQFELSKAKDFDSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 1375
Query: 263 ALEKLAQSM 271
L L S+
Sbjct: 1376 VLNLLKNSL 1384
>gi|297812215|ref|XP_002873991.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319828|gb|EFH50250.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1693
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 124/240 (51%), Gaps = 19/240 (7%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+EN ++YNF +K LL +A H SY YQRLEF+GDA L +++Y F +P+L P
Sbjct: 1287 LENQLDYNFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKP 1346
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQL+ LR+ +++ + LA VAV +F+ + L + ++++ + +
Sbjct: 1347 GQLTDLRSLSVNNKALANVAVSFSLKRFLFCESVYLHEAIEDYTNFRAASPLASGPSEGP 1406
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
+ PKVL D+VES A+++D F+L +W + L+P+ L LQ P+ L +LCQ
Sbjct: 1407 RCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQI--SPIKELIELCQ 1464
Query: 217 KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA-----REALEKLAQSM 271
++ +R+ I++ DG F +K +A RE+ +K AQ M
Sbjct: 1465 S---------YKWDRE-ISATKKDGGFSVELKVTKKGCCLTVSATGRNKRESTKKAAQLM 1514
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 22/147 (14%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EALT + S +RLE +GDA L A+S ++FL + +LD G+L+ R+ ++ L R
Sbjct: 1098 EALTTEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDRLDEGELTRRRSKAVNNSNLCR 1157
Query: 115 VAVKHGFYKFVRHSA--------------AALDDKVKEFAEAVSQ-----EDNTAVY--- 152
+A+K ++R A D+ E ++++ E N+ +
Sbjct: 1158 LAIKRNLQVYIRDQALDPTQFFAFGHPCRVTCDEVTSEEVHSLNRVPGLLESNSEIRCSK 1217
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDF 179
G K +AD+VE++ A VD F
Sbjct: 1218 GHHWLYKKTIADVVEALVGAFLVDSGF 1244
Score = 38.1 bits (87), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 282 DDIDEKFEIEA-------AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATT 334
D + +K IEA AK LHE C W P ++ ++EGP H K F V +
Sbjct: 1596 DRLPQKTIIEAGRPSSKTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFFYKVILEVE 1655
Query: 335 DG---VLFITGDEKSRVKDAENSAASMMLRALRESTYL 369
D L G+ ++ K A AA + L+ S +L
Sbjct: 1656 DAPNMTLECYGEARATKKGAAEHAAQAAIWCLKHSGFL 1693
>gi|78099743|gb|ABB20894.1| dicer-like protein [Oryza sativa Indica Group]
Length = 1116
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 120/213 (56%), Gaps = 10/213 (4%)
Query: 15 DYRLLKEAMLTS--LPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQ 69
D +LL+E + L S + + +E + YNF K LL EA+TH S + YQ
Sbjct: 698 DMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQ 757
Query: 70 RLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSA 129
RLEF+GD+ L L L+ +++ + +DPG+L+ LR+A +S E A+ V++ + ++H +
Sbjct: 758 RLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGS 817
Query: 130 AALDDKVKEFAEA---VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM 186
L ++ E+ + +++ + + K PKVL DI+ESIA A+++D DF++ +W
Sbjct: 818 GILLGQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFLDTDFNVDMVWE 877
Query: 187 IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNG 219
IF LL P++T ++L P L +LC G
Sbjct: 878 IFEPLLSPLITPDKLAL--PPYRELLELCSHIG 908
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ EA+T ++ S +RLE +GD+ L + +FL YP GQLS +R+ +
Sbjct: 528 LILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNAT 587
Query: 112 LARVAVKHGFYKFVRHSA 129
L + + +VR +A
Sbjct: 588 LHKHGIWRSLQGYVRDNA 605
>gi|94450856|gb|ABF19798.1| dicer-like 2 spliceform 2 [Arabidopsis thaliana]
Length = 1374
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 134/249 (53%), Gaps = 24/249 (9%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYP 92
V Y+E+++NY+F++K LL EALTH SY YQRLEF+GD+ L ++ +++ YP
Sbjct: 1135 VGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYP 1194
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
L PG L+ +R+A+++ E A VAVK +K + +++ L + Q + +
Sbjct: 1195 CLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTF 1254
Query: 153 G--GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL 210
G I PKVL D++ES+A AI+VD ++ + ++ + LL ++T E ++ PV
Sbjct: 1255 GWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKL--HPVRE 1312
Query: 211 LFKLCQKNGKQVDIKHWR---KNRKNIASVYV-----DGSFVASASSEQKEIAKLNAARE 262
L +LCQK W+ K+ S V + SF +A + K++AK A +E
Sbjct: 1313 LTELCQK---------WQFELSKAKDFDSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 1363
Query: 263 ALEKLAQSM 271
L L S+
Sbjct: 1364 VLNLLKNSL 1372
>gi|357448551|ref|XP_003594551.1| Endoribonuclease Dicer [Medicago truncatula]
gi|355483599|gb|AES64802.1| Endoribonuclease Dicer [Medicago truncatula]
Length = 1418
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 114/187 (60%), Gaps = 8/187 (4%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYP 92
V ++E+++ Y+F+++ LL EALTH SY YQRLE++GD+ L ++ +++ YP
Sbjct: 1178 VRFLESLLKYSFRDRSLLVEALTHGSYMLPDVPRCYQRLEYLGDSVLDYLITMHLYRVYP 1237
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ PGQL+ +R+A+++ + A A+K +K V H++ L + + + +++ +
Sbjct: 1238 GMSPGQLTDMRSASVNNDCYAMSAIKVQLHKHVLHASQELHKHIVATLDKFDDQSSSS-F 1296
Query: 153 GGSIKA--PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL 210
G +A PKVL DI+ES+A AI+VD +D + +W R LLEP+VT + L P+
Sbjct: 1297 GWESEATFPKVLGDIIESLAGAIFVDSGYDKEAVWKSIRPLLEPLVTPDTLTI--HPIRE 1354
Query: 211 LFKLCQK 217
L +LCQK
Sbjct: 1355 LNELCQK 1361
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 20/148 (13%)
Query: 45 YNFKNKRL------------LEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYP 92
YNFK L + EA+T S ++ Y+ LE +GD+ L A+S +F Y
Sbjct: 989 YNFKRMHLDYCPQNKIQTFKVLEAMTTKSCKETFHYESLETLGDSFLKYAVSQQLFNMYQ 1048
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSA--------AALDDKVKEFAEAVS 144
G LS+ R I L+++ F+R+ + + + E V
Sbjct: 1049 NHHEGLLSVKREKIICNAALSKLGCDFRLPGFIRNDPFDPKTWIIPGVKSESFKLEETVF 1108
Query: 145 QEDNTAVYGGSIKAPKVLADIVESIAAA 172
G KV+AD+VE++ A
Sbjct: 1109 NGRKIYTRGDRKLKRKVVADVVEALIGA 1136
>gi|170033786|ref|XP_001844757.1| endoribonuclease Dcr-1 [Culex quinquefasciatus]
gi|167874834|gb|EDS38217.1| endoribonuclease Dcr-1 [Culex quinquefasciatus]
Length = 2270
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 141/278 (50%), Gaps = 26/278 (9%)
Query: 20 KEAMLTSLPSPE-----MEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRL 71
+ +LT P+PE + D E+ + Y F+++ L +A+TH+SY + YQRL
Sbjct: 1993 RSPLLTHAPNPEKSLEHLLDGYSAFEDSLGYRFQDRSYLLQAMTHASYCPNRLTDCYQRL 2052
Query: 72 EFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAA 131
EF+GDA L ++ +++ Q PG L+ LR+A ++ A +AV+H F+K+ RH +
Sbjct: 2053 EFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPG 2112
Query: 132 LDDKVKEF-------AEAVSQE-----DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDF 179
L+D + F ++S+E ++ ++ PK L D+ ES+A AI++D +
Sbjct: 2113 LNDVIDRFVRIQQDNGHSISEEYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNM 2172
Query: 180 DLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIAS 236
L +W ++RG++ P + P+ L +L K GK + R+ R +
Sbjct: 2173 SLDAVWRVYRGMMGPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTV-E 2231
Query: 237 VYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVN 274
V+ G+F + + IAK AA+ AL +L + +N
Sbjct: 2232 VFGKGTFRGIGRNYR--IAKCTAAKCALRQLKKMGLIN 2267
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
Y ++ N+ + ++ +ALT S+ D + +RLE IGD+ L A++ Y++ Y + G
Sbjct: 1719 YQPDLTNHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYENVHEG 1778
Query: 98 QLSLLRAANISTEKLARVAVK 118
+LS LR+ +S L R+ +
Sbjct: 1779 KLSHLRSKQVSNLNLYRLGRR 1799
>gi|242039323|ref|XP_002467056.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor]
gi|241920910|gb|EER94054.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor]
Length = 1586
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 111/187 (59%), Gaps = 8/187 (4%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E + YNF K LL EA++H S + YQRLEF+GD+ L L ++ +++ + +D
Sbjct: 1182 LEAKLKYNFSVKGLLLEAVSHPSLQELGVDYCYQRLEFLGDSVLDLLITQHLYATHTDVD 1241
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ---EDNTAVY 152
PG+L+ LR+A +S E A+ V++ + ++H + L ++V E+ + + ++N V
Sbjct: 1242 PGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQVTEYVRSSLEYHGKENEFVQ 1301
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
+ KAPKVL DI+ESI AI++D++F++ +W I LL P++T ++L P L
Sbjct: 1302 QATFKAPKVLGDIMESITGAIFIDVNFNVDLVWKIVEPLLSPMITPDKLAL--PPYRELL 1359
Query: 213 KLCQKNG 219
+LC G
Sbjct: 1360 ELCSHLG 1366
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ EA+T ++ S +RLE +GD+ L + +FL YP G LS +R+ +
Sbjct: 984 LILEAITTLRCCETFSLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVCNAT 1043
Query: 112 LARVAVKHGFYKFVRHSA 129
L + + ++R +A
Sbjct: 1044 LHKHGICRSLQGYIRDTA 1061
>gi|6714410|gb|AAF26098.1|AC012328_1 unknown protein [Arabidopsis thaliana]
Length = 2042
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 134/249 (53%), Gaps = 24/249 (9%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYP 92
V Y+E+++NY+F++K LL EALTH SY YQRLEF+GD+ L ++ +++ YP
Sbjct: 1803 VGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYP 1862
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
L PG L+ +R+A+++ E A VAVK +K + +++ L + Q + +
Sbjct: 1863 CLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTF 1922
Query: 153 G--GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL 210
G I PKVL D++ES+A AI+VD ++ + ++ + LL ++T E ++ PV
Sbjct: 1923 GWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKL--HPVRE 1980
Query: 211 LFKLCQKNGKQVDIKHWR---KNRKNIASVYV-----DGSFVASASSEQKEIAKLNAARE 262
L +LCQK W+ K+ S V + SF +A + K++AK A +E
Sbjct: 1981 LTELCQK---------WQFELSKAKDFDSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 2031
Query: 263 ALEKLAQSM 271
L L S+
Sbjct: 2032 VLNLLKNSL 2040
>gi|195443910|ref|XP_002069632.1| GK11626 [Drosophila willistoni]
gi|194165717|gb|EDW80618.1| GK11626 [Drosophila willistoni]
Length = 2281
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 127/247 (51%), Gaps = 23/247 (9%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E I+ Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 2029 EAILGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2088
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY---- 152
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F + QE+ +
Sbjct: 2089 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR-IQQENGHCISEEYY 2147
Query: 153 ---------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
++ PK L D+ ESIA AI++D + L +W ++ +++P +
Sbjct: 2148 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMKPEIEQFSNSV 2207
Query: 204 QPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
P+ L +L K GK + R+ R + V+ G+F + + IAK AA
Sbjct: 2208 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTV-DVFCKGTFRGIGRNYR--IAKCTAA 2264
Query: 261 REALEKL 267
+ AL +L
Sbjct: 2265 KCALRQL 2271
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1739 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1798
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1799 HLRSKQVANLNLYRLGRR 1816
>gi|2244899|emb|CAB10321.1| UFD1 like protein [Arabidopsis thaliana]
gi|7268289|emb|CAB78584.1| UFD1 like protein [Arabidopsis thaliana]
Length = 778
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 93/151 (61%), Gaps = 5/151 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD--STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E I+NY FK+K LL +A T +SY D S SY+ LE +GD+ L + + YP+ P
Sbjct: 57 LEKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLYPKEAP 116
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRA N+ TEKLARVAV H Y ++RH L++++ EF EA+ E G +
Sbjct: 117 GPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAM--EKYPLHSNGLL 174
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMI 187
K PKVLADIVES AI++D + + +W I
Sbjct: 175 KVPKVLADIVESTIGAIFMDCN-STETVWKI 204
>gi|406034947|emb|CCF23094.1| Dicer 2 [Blattella germanica]
Length = 1649
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 111/193 (57%), Gaps = 20/193 (10%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+ENI+ Y FK++ L +ALTH+SYT + YQRLEF+GDA L ++ +++ + +L
Sbjct: 1398 IENILQYTFKDRSYLLQALTHASYTPNRVTECYQRLEFLGDAILDFLITCHIYESCGELT 1457
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNT------ 149
PG+L+ LR++ ++ A + V++GF+KF+++++ L D V F + QEDN
Sbjct: 1458 PGELTDLRSSLVNNVTFASLTVRYGFHKFMKYTSTRLMDMVDRFVKF--QEDNGHSINEE 1515
Query: 150 ---------AVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEE 200
+I PKVL D+ ESIA AIY+D +L+++W ++ L+ +
Sbjct: 1516 VLILLEETETNIAEAIDVPKVLGDLFESIAGAIYLDSGMNLKEVWRVYYRLMRKEIRTFS 1575
Query: 201 LQQQPQPVTLLFK 213
+ QPV LL++
Sbjct: 1576 KEVPKQPVRLLYE 1588
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 51 RLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTE 110
R + +ALT +S D + +RLE +GD+ L L S Y+++ Y +LD G+L+ ++ I
Sbjct: 1161 REVVQALTSASSNDIFNLERLETLGDSFLKLMASLYLYMHYLRLDEGKLTQVKGKLIGNR 1220
Query: 111 KLARVAVKHGFYKFVR 126
L + +++
Sbjct: 1221 NLYYCGINQKLGGYMK 1236
>gi|356565129|ref|XP_003550797.1| PREDICTED: dicer-like protein 4-like [Glycine max]
Length = 1636
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 108/190 (56%), Gaps = 7/190 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E + ++F +K LL +A H SY YQRLEF+GDA L +++YVF AYP+L P
Sbjct: 1213 LEGKLGHHFFHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLITSYVFSAYPKLKP 1272
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ--EDNTAVYGG 154
GQL+ LR+ +++ + A +AV F KF+ ++ L + +K++ + + + DN+ G
Sbjct: 1273 GQLTDLRSLSVNNKAFACLAVDRSFDKFLLCDSSGLSEAIKKYVDYIRRPVSDNSIKEGP 1332
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL 214
K PK L D+VES AI +D F+L K+W I L+ I+ Q PV L +L
Sbjct: 1333 --KCPKALGDLVESCVGAILLDSGFNLNKVWKIMTSFLDSIMKFSS-SLQLSPVRDLREL 1389
Query: 215 CQKNGKQVDI 224
CQ + +++
Sbjct: 1390 CQSHNMELEF 1399
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 279 EIFDDIDEKFEIEA---AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTD 335
+IF++ D ++ A+ +L+ELC W PS++ K EGP H K+F V + +
Sbjct: 1535 QIFENRDCSSDLSGTGTARSRLYELCASYCWKPPSFECCKAEGPDHLKQFTCKVTLEIEE 1594
Query: 336 G---VLFITGDEKSRVKDAENSAASMMLRALRESTYL 369
+L G+ S+ KDA SAA L+ YL
Sbjct: 1595 AQNLILEFVGEPLSKKKDAAESAAEGAFWYLQHEGYL 1631
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 22/147 (14%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EALT + S +RLE +GDA L A++ + FL + L G L+ R+ ++ L +
Sbjct: 1024 EALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLMHDSLHEGDLTKRRSNAVNNSNLFK 1083
Query: 115 VAVKHG--------------FYKFVRHSAAALDDKVKE---FAEAVSQEDNTAVYGGSIK 157
+A+K FY R ++ KE F +E K
Sbjct: 1084 LAIKRNLQVYICDQTFDPTQFYALGRPCPRLCSNETKESIHFCLNSVKEQGKVTETQCNK 1143
Query: 158 AP-----KVLADIVESIAAAIYVDIDF 179
K +AD+VE++ A VD F
Sbjct: 1144 NHHWLHRKTIADVVEALVGAFLVDSGF 1170
>gi|356546104|ref|XP_003541471.1| PREDICTED: dicer-like protein 4-like [Glycine max]
Length = 1636
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 107/190 (56%), Gaps = 7/190 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E + ++F +K LL +A H SY YQRLEF+GDA L +++Y+F AYP+L P
Sbjct: 1211 LEGKLGHHFFHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLITSYLFSAYPKLKP 1270
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ--EDNTAVYGG 154
GQL+ LR+ +++ + A +AV F F+ ++ L + +K++ + V + DN G
Sbjct: 1271 GQLTDLRSLSVNNKAFACLAVDRSFDNFLLCDSSGLSEAIKKYVDYVRRPVSDNGIKEGP 1330
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL 214
K PK L D+VES AI +D F+L K+W I L+PI+ Q PV L +L
Sbjct: 1331 --KCPKALGDLVESCVGAILLDSGFNLNKVWKIMTSFLDPIMKFSS-SLQLSPVRDLREL 1387
Query: 215 CQKNGKQVDI 224
CQ + +++
Sbjct: 1388 CQSHNLELEF 1397
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 292 AAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDG---VLFITGDEKSRV 348
A+ +L+ELC W PS++ K EGP H K+F V + + +L G+ S+
Sbjct: 1551 TARSRLYELCAAYCWKPPSFECCKKEGPDHLKQFTCKVTLEIEEAQNLILEFVGEPLSKK 1610
Query: 349 KDAENSAASMMLRALRESTYL 369
KDA SAA L L+ +L
Sbjct: 1611 KDAAESAAEGALWYLQHEGFL 1631
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 60/147 (40%), Gaps = 22/147 (14%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EALT + S +RLE +GDA L A++ + FL + L G L+ R+ ++ L +
Sbjct: 1022 EALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLMHDSLHEGDLTKRRSNAVNNSNLFK 1081
Query: 115 VAVKHG--------------FYKFVRHSAAALDDKVKE---FAEAVSQEDNTAVYGGSIK 157
+A+K FY R ++ +E F + A K
Sbjct: 1082 LAIKRNLQVYICDQTFDPTQFYALGRPCPRVCSNETEESIHFCLNSVMQQGKATETRCSK 1141
Query: 158 AP-----KVLADIVESIAAAIYVDIDF 179
K +AD+VE++ A VD F
Sbjct: 1142 NHHWLHRKTIADVVEALVGAFLVDSGF 1168
>gi|195037032|ref|XP_001989969.1| GH18503 [Drosophila grimshawi]
gi|193894165|gb|EDV93031.1| GH18503 [Drosophila grimshawi]
Length = 2254
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 127/247 (51%), Gaps = 23/247 (9%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 2002 EASLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2061
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY---- 152
G L+ LR+A ++ A +AV+HGF+K+ RH + L+D + F + QE+ ++
Sbjct: 2062 GALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVR-IQQENGHSISEEYY 2120
Query: 153 ---------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
++ PK L D+ ESIA AI++D D L +W ++ +++P +
Sbjct: 2121 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSDLSLDVVWRVYSNMMKPEIEQFSNSV 2180
Query: 204 QPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
P+ L +L K GK + R+ R + V+ G+F + + IAK AA
Sbjct: 2181 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTV-DVFCKGTFRGIGRNYR--IAKCTAA 2237
Query: 261 REALEKL 267
+ AL +L
Sbjct: 2238 KCALRQL 2244
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 28 PSPEMEDAVF-YVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNY 86
PS + D F Y ++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y
Sbjct: 1698 PSASISDFNFDYQPELVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTY 1757
Query: 87 VFLAYPQLDPGQLSLLRAANISTEKLARVAVK 118
+++ Y + G+LS LR+ ++ L R+ +
Sbjct: 1758 LYMTYENVHEGKLSHLRSKQVANLNLYRLGRR 1789
>gi|195502701|ref|XP_002098342.1| GE24009 [Drosophila yakuba]
gi|194184443|gb|EDW98054.1| GE24009 [Drosophila yakuba]
Length = 2250
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 126/247 (51%), Gaps = 23/247 (9%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1998 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2057
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY---- 152
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F + QE+ ++
Sbjct: 2058 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR-IQQENGHSISEEYY 2116
Query: 153 ---------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
++ PK L D+ ESIA AI++D + L +W ++ ++ P +
Sbjct: 2117 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSV 2176
Query: 204 QPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
P+ L +L K GK + R+ R + V+ G+F + + IAK AA
Sbjct: 2177 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTV-DVFCKGTFRGIGRNYR--IAKCTAA 2233
Query: 261 REALEKL 267
+ AL +L
Sbjct: 2234 KCALRQL 2240
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1715 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1774
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1775 HLRSKQVANLNLYRLGRR 1792
>gi|195331135|ref|XP_002032258.1| GM23619 [Drosophila sechellia]
gi|194121201|gb|EDW43244.1| GM23619 [Drosophila sechellia]
Length = 2249
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 126/247 (51%), Gaps = 23/247 (9%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1997 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2056
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY---- 152
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F + QE+ ++
Sbjct: 2057 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR-IQQENGHSISEEYY 2115
Query: 153 ---------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
++ PK L D+ ESIA AI++D + L +W ++ ++ P +
Sbjct: 2116 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSV 2175
Query: 204 QPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
P+ L +L K GK + R+ R + V+ G+F + + IAK AA
Sbjct: 2176 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTV-DVFCKGTFRGIGRNYR--IAKCTAA 2232
Query: 261 REALEKL 267
+ AL +L
Sbjct: 2233 KCALRQL 2239
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1714 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1773
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1774 HLRSKQVANLNLYRLGRR 1791
>gi|125773725|ref|XP_001358121.1| GA18437 [Drosophila pseudoobscura pseudoobscura]
gi|54637856|gb|EAL27258.1| GA18437 [Drosophila pseudoobscura pseudoobscura]
Length = 2280
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 138/282 (48%), Gaps = 28/282 (9%)
Query: 5 SFTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD 64
S+ PR+ + Y E L L S E E + Y F+++ L +A+TH+SYT
Sbjct: 1998 SWPTPRSPLLHYAPNAERELEHLLSGFEE-----FEASLGYRFRDRSYLLQAMTHASYTP 2052
Query: 65 ---STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGF 121
+ YQRLEF+GDA L ++ +++ Q PG L+ LR+A ++ A +AV+HGF
Sbjct: 2053 NRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGF 2112
Query: 122 YKFVRHSAAALDDKVKEFAEAVSQEDNTAVY-------------GGSIKAPKVLADIVES 168
+KF RH + L+D + F + QE+ ++ ++ PK L D+ ES
Sbjct: 2113 HKFFRHLSPGLNDVIDRFVR-IQQENGHSISEEYYLLSEEECDDAEDVEVPKALGDVFES 2171
Query: 169 IAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL---CQKNGKQVDIK 225
IA AI++D + L +W ++ ++ P + P+ L +L K GK +
Sbjct: 2172 IAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLA 2231
Query: 226 HWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
R+ R + V+ G+F + + IAK AA+ AL +L
Sbjct: 2232 DGRRVRVTV-DVFCKGTFRGIGRNYR--IAKCTAAKCALRQL 2270
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%)
Query: 42 IINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSL 101
++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1741 LVGHPGPSPSVILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSH 1800
Query: 102 LRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1801 LRSKQVANLNLYRLGRR 1817
>gi|195143531|ref|XP_002012751.1| GL23778 [Drosophila persimilis]
gi|194101694|gb|EDW23737.1| GL23778 [Drosophila persimilis]
Length = 2278
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 138/282 (48%), Gaps = 28/282 (9%)
Query: 5 SFTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD 64
S+ PR+ + Y E L L S E E + Y F+++ L +A+TH+SYT
Sbjct: 1996 SWPTPRSPLLHYAPNAERELEHLLSGFEE-----FEASLGYRFRDRSYLLQAMTHASYTP 2050
Query: 65 ---STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGF 121
+ YQRLEF+GDA L ++ +++ Q PG L+ LR+A ++ A +AV+HGF
Sbjct: 2051 NRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGF 2110
Query: 122 YKFVRHSAAALDDKVKEFAEAVSQEDNTAVY-------------GGSIKAPKVLADIVES 168
+KF RH + L+D + F + QE+ ++ ++ PK L D+ ES
Sbjct: 2111 HKFFRHLSPGLNDVIDRFVR-IQQENGHSISEEYYLLSEEECDDAEDVEVPKALGDVFES 2169
Query: 169 IAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL---CQKNGKQVDIK 225
IA AI++D + L +W ++ ++ P + P+ L +L K GK +
Sbjct: 2170 IAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLA 2229
Query: 226 HWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
R+ R + V+ G+F + + IAK AA+ AL +L
Sbjct: 2230 DGRRVRVTV-DVFCKGTFRGIGRNYR--IAKCTAAKCALRQL 2268
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%)
Query: 42 IINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSL 101
++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1739 LVGHPGPSPSVILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSH 1798
Query: 102 LRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1799 LRSKQVANLNLYRLGRR 1815
>gi|17738129|ref|NP_524453.1| Dicer-1 [Drosophila melanogaster]
gi|51316117|sp|Q9VCU9.1|DCR1_DROME RecName: Full=Endoribonuclease Dcr-1; Short=Protein dicer-1
gi|7300916|gb|AAF56056.1| Dicer-1 [Drosophila melanogaster]
Length = 2249
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 125/247 (50%), Gaps = 23/247 (9%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1997 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2056
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY---- 152
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F + QE+ +
Sbjct: 2057 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR-IQQENGHCISEEYY 2115
Query: 153 ---------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
++ PK L D+ ESIA AI++D + L +W ++ ++ P +
Sbjct: 2116 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSV 2175
Query: 204 QPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
P+ L +L K GK + R+ R + V+ G+F + + IAK AA
Sbjct: 2176 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTV-DVFCKGTFRGIGRNYR--IAKCTAA 2232
Query: 261 REALEKL 267
+ AL +L
Sbjct: 2233 KCALRQL 2239
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1714 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1773
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1774 HLRSKQVANLNLYRLGRR 1791
>gi|194910778|ref|XP_001982226.1| GG12488 [Drosophila erecta]
gi|190656864|gb|EDV54096.1| GG12488 [Drosophila erecta]
Length = 2249
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 126/247 (51%), Gaps = 23/247 (9%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1997 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2056
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY---- 152
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F + QE+ ++
Sbjct: 2057 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR-IQQENGHSISEEYY 2115
Query: 153 ---------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
++ PK L D+ ESIA AI++D + L +W ++ ++ P +
Sbjct: 2116 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSV 2175
Query: 204 QPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
P+ L +L K GK + R+ R + V+ G+F + + IAK AA
Sbjct: 2176 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTV-DVFCKGTFRGIGRNYR--IAKCTAA 2232
Query: 261 REALEKL 267
+ AL +L
Sbjct: 2233 KCALRQL 2239
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1714 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1773
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1774 HLRSKQVANLNLYRLGRR 1791
>gi|449505410|ref|XP_004162460.1| PREDICTED: LOW QUALITY PROTEIN: dicer-like protein 4-like [Cucumis
sativus]
Length = 1228
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 9/235 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
++N + + F +K LL +AL H SY YQRLEF+GDA L +++Y++ AYP+L P
Sbjct: 791 LQNSLGHRFLHKGLLLQALVHPSYHKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKP 850
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQL+ LR+ + E A VAV FYKF+ + +L +K + +
Sbjct: 851 GQLTDLRSVFVRNEAFANVAVDRFFYKFLLCDSTSLLSDIKSYVHFIKAPPFERDSLEQP 910
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
+ PK L D+VES A+ VD FD+ +W I ++PI++ Q P+ + + CQ
Sbjct: 911 RCPKALGDLVESSVGAVLVDTGFDMNCVWKIMLSFIDPIMSFSGFQL--SPIRDITEFCQ 968
Query: 217 KNGKQVDIKHWR-KNRKNIASVYVDGSFVASASS---EQKEIAKLNAAREALEKL 267
G ++ + + ++ + G+F A+AS+ +K+ AK+ AA L KL
Sbjct: 969 NCGWKLKFNSSKMEGYYSVKAEVKGGNFHATASAANRRKKDAAKI-AANLILTKL 1022
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EALT + S +RLE +GD+ L A++ Y+FL + + D G+L+ R+ + L +
Sbjct: 603 EALTTEKCQERISLERLEILGDSFLKFAVARYLFLTHDKFDEGELTRRRSYLVKNFNLLK 662
Query: 115 VAVKHGFYKFVR 126
+A + ++R
Sbjct: 663 LATRKNLQVYIR 674
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 292 AAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAV 329
A+ +L+E+C W +PS+ +EGPSH K F V
Sbjct: 1138 TARSRLYEVCAANHWNRPSFDCMNEEGPSHLKMFTYKV 1175
>gi|195109134|ref|XP_001999145.1| GI24348 [Drosophila mojavensis]
gi|193915739|gb|EDW14606.1| GI24348 [Drosophila mojavensis]
Length = 2256
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 126/247 (51%), Gaps = 23/247 (9%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 2004 EASLGYTFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2063
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY---- 152
G L+ LR+A ++ A +AV+HGF+K+ RH + L+D + F + QE+ +
Sbjct: 2064 GALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVR-IQQENGHCISEEYY 2122
Query: 153 ---------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
++ PK L D+ ESIA AI++D + L +W +F +++P +
Sbjct: 2123 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVFSNMMKPEIEQFSNSV 2182
Query: 204 QPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
P+ L +L K GK + R+ R + V+ G+F + + IAK AA
Sbjct: 2183 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTV-DVFCKGTFRGIGRNYR--IAKCTAA 2239
Query: 261 REALEKL 267
+ AL +L
Sbjct: 2240 KCALRQL 2246
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 21 EAMLTSLPSPEMEDAVFYVEN---IINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDA 77
E +LT P DA F + ++ + + ++ +ALT S+ D + +RLE IGD+
Sbjct: 1699 ERLLTDRP-----DAGFSFDQQPELVGHPGPSPSIILQALTMSNANDGINLERLETIGDS 1753
Query: 78 ALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVK 118
L A++ Y+++ Y + G+LS LR+ ++ L R+ +
Sbjct: 1754 FLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRR 1794
>gi|449457995|ref|XP_004146733.1| PREDICTED: dicer-like protein 4-like [Cucumis sativus]
Length = 1657
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 9/235 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
++N + + F +K LL +AL H SY YQRLEF+GDA L +++Y++ AYP+L P
Sbjct: 1220 LQNSLGHRFLHKGLLLQALVHPSYHKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKP 1279
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQL+ LR+ + E A VAV FYKF+ + +L +K + +
Sbjct: 1280 GQLTDLRSVFVRNEAFANVAVDRFFYKFLLCDSTSLLSDIKSYVHFIKAPPFERDSLEQP 1339
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
+ PK L D+VES A+ VD FD+ +W I ++PI++ Q P+ + + CQ
Sbjct: 1340 RCPKALGDLVESSVGAVLVDTGFDMNCVWKIMLSFIDPIMSFSGFQL--SPIRDITEFCQ 1397
Query: 217 KNGKQVDIKHWR-KNRKNIASVYVDGSFVASASS---EQKEIAKLNAAREALEKL 267
G ++ + + ++ + G+F A+AS+ +K+ AK+ AA L KL
Sbjct: 1398 NCGWKLKFNSSKMEGYYSVKAEVKGGNFHATASAANRRKKDAAKI-AANLILTKL 1451
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EALT + S +RLE +GD+ L A++ Y+FL + + D G+L+ R+ + L +
Sbjct: 1032 EALTTEKCQERISLERLEILGDSFLKFAVARYLFLTHDKFDEGELTRRRSYLVKNFNLLK 1091
Query: 115 VAVKHGFYKFVR 126
+A + ++R
Sbjct: 1092 LATRKNLQVYIR 1103
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 292 AAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAV 329
A+ +L+E+C W +PS+ +EGPSH K F V
Sbjct: 1567 TARSRLYEVCAANHWNRPSFDCMNEEGPSHLKMFTYKV 1604
>gi|194744012|ref|XP_001954492.1| GF18290 [Drosophila ananassae]
gi|190627529|gb|EDV43053.1| GF18290 [Drosophila ananassae]
Length = 2252
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 126/247 (51%), Gaps = 23/247 (9%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 2000 EASLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2059
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY---- 152
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F + QE+ ++
Sbjct: 2060 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR-IQQENGHSISEEYY 2118
Query: 153 ---------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
++ PK L D+ ESIA AI++D + L +W ++ ++ P +
Sbjct: 2119 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVYSNMMSPEIEQFSNSV 2178
Query: 204 QPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
P+ L +L K GK + R+ R + V+ G+F + + IAK AA
Sbjct: 2179 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTV-DVFCKGTFRGIGRNYR--IAKCTAA 2235
Query: 261 REALEKL 267
+ AL +L
Sbjct: 2236 KCALRQL 2242
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1718 GLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1777
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1778 HLRSKQVANLNLYRLGRR 1795
>gi|195572986|ref|XP_002104476.1| Dicer-1 [Drosophila simulans]
gi|194200403|gb|EDX13979.1| Dicer-1 [Drosophila simulans]
Length = 1533
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 126/247 (51%), Gaps = 23/247 (9%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1281 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1340
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY---- 152
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F + QE+ ++
Sbjct: 1341 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR-IQQENGHSISEEYY 1399
Query: 153 ---------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
++ PK L D+ ESIA AI++D + L +W ++ ++ P +
Sbjct: 1400 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSV 1459
Query: 204 QPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
P+ L +L K GK + R+ R + V+ G+F + + IAK AA
Sbjct: 1460 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTV-DVFCKGTFRGIGRNYR--IAKCTAA 1516
Query: 261 REALEKL 267
+ AL +L
Sbjct: 1517 KCALRQL 1523
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 998 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1057
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1058 HLRSKQVANLNLYRLGRR 1075
>gi|409050172|gb|EKM59649.1| hypothetical protein PHACADRAFT_114689 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1230
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 106/203 (52%), Gaps = 24/203 (11%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
VE I + F +L EALTH S ++ TSY RLEF+GD L + Y+F AYP+L P
Sbjct: 947 VEAITGFKFHTPAILAEALTHGSISNQHMTSYDRLEFLGDGILDSNIVWYIFKAYPKLSP 1006
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF--------------AEA 142
G LSLL+AA +S LA VAV+ G Y+ VR+ + + VK + AEA
Sbjct: 1007 GGLSLLKAAMVSNLTLAAVAVESGLYEHVRYCSKEIMSAVKLYVQKIFTLRDQEYRDAEA 1066
Query: 143 VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI----VTL 198
S+ N + + APK LAD+VE+I AIYV F Q + F+ +L P + L
Sbjct: 1067 ESRLPNQ--FWLEVDAPKPLADLVEAIVGAIYVSDRFGTQGVKTFFQKVLRPFYDRHIRL 1124
Query: 199 EELQQQPQPVTLLFKLCQKNGKQ 221
L P P T LF+ Q G Q
Sbjct: 1125 HTL--APHPGTSLFEFLQAEGCQ 1145
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 53 LEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKL 112
L +A+T S Y+RLE +GDA L LS Y F P G LS R +S + L
Sbjct: 759 LFQAVTPVSANVEKDYERLELLGDALLKDILSTYFFATMPTKREGALSSARGQVVSNKML 818
Query: 113 ARVAVKHGFYKFVR 126
+ A+ G +++
Sbjct: 819 HQNAMAAGMPPWIQ 832
>gi|157285013|gb|ABV31246.1| dicer-like 4 [Physcomitrella patens]
Length = 1445
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 137/248 (55%), Gaps = 22/248 (8%)
Query: 33 EDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLA 90
E V +E ++NY F+NK LL EALTH+S + YQRL F+GDA L ++ + +
Sbjct: 1171 EAKVSELEILLNYKFQNKGLLVEALTHASCRRHSGDCYQRLGFLGDAVLDFLITKHFYAN 1230
Query: 91 YPQL--DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN 148
L DPG L+ LR+A ++ E ARVAV+H + ++ H+++ L +V ++ S D
Sbjct: 1231 SANLKRDPGLLTDLRSAAVNNECFARVAVRHNLHLYLLHNSSDLAARVDKYVHG-STTDV 1289
Query: 149 TAVYGG-------SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEEL 201
A+ S + +VL+D+VES+A A+++D + L +W +F+ LL+P+VT L
Sbjct: 1290 CALSEAFLLSKHLSCSSMQVLSDLVESLAGAVFLDSGYKLDTVWNVFKQLLKPLVTPATL 1349
Query: 202 QQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
+ +P+ L++LCQ ++ +++K R+ + G F + + E K+ R
Sbjct: 1350 RL--EPIRELWELCQT--EKFGEPNYKKKREAM------GDFDMTVTVELKDETITGVGR 1399
Query: 262 EALEKLAQ 269
+ EK A+
Sbjct: 1400 KPDEKSAR 1407
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 14/143 (9%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ EA+T S +S S + LE +GDA L +++S +FL + +LD G+LS R I +
Sbjct: 1013 LMLEAITTSKCQESFSLEGLELLGDAFLEVSVSERLFLLHNRLDEGELSKRRTNLICNKM 1072
Query: 112 LARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAP----KVLADIVE 167
L R+ + G ++R + + KE+A V K P K +AD+ E
Sbjct: 1073 LERLGRERGIMNYIRDTQFS----PKEWATP------GRVRETQCKLPPLQGKTIADVFE 1122
Query: 168 SIAAAIYVDIDFDLQKLWMIFRG 190
++ A Y+ + + M + G
Sbjct: 1123 ALIGAHYIHGGVEAAQAMMGWLG 1145
>gi|357167959|ref|XP_003581414.1| PREDICTED: endoribonuclease Dicer homolog 4-like [Brachypodium
distachyon]
Length = 1627
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 126/239 (52%), Gaps = 16/239 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E +I Y FK+K L+ EA H S+ + YQ+LEF+GDA L +++Y++ AYP L P
Sbjct: 1181 LEELIGYKFKHKGLIIEAFVHPSFNKHSGGCYQKLEFLGDAVLEYLMTSYLYSAYPDLKP 1240
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+++ L++ + + A VA++ +K++ + L V +F + ++
Sbjct: 1241 GEITDLKSLAVCNDSFAYVAIQKCIHKYIIKDSNHLTKAVSKFENYIKLPNSEKDLVEEP 1300
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
PKVL DIVES AA+ +D F+L +W + LL+P+++ + P+ + +LCQ
Sbjct: 1301 ACPKVLGDIVESCVAAVLLDSGFNLNYVWKLVLMLLKPVLSFSGMHM--NPMREIRELCQ 1358
Query: 217 KNGKQV--------DIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
N ++ D ++ K NI S + +A++ ++A+ AARE L KL
Sbjct: 1359 CNELELGLPKPMKADGEYHVKVEVNINSTMIS----CTAANRNSKVARKLAARETLSKL 1413
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EA+T + S +R E +GDA L + + F++Y LD GQL+ R+ ++ L
Sbjct: 993 EAITTERCLERISLERFEVLGDAFLKYVVGRHNFMSYEGLDEGQLTRRRSDIVNNSNLHE 1052
Query: 115 VAVKHGFYKFVR 126
++VK ++R
Sbjct: 1053 LSVKRNLQVYIR 1064
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI---ATTDGVLFITGDEKSR 347
+ AK L ELC W P +++ +EGPSH ++F V + ++ +L D K +
Sbjct: 1538 KTAKSFLFELCAASYWKPPEFQLCIEEGPSHLRRFTYKVIVQIRGPSETLLECYSDAKLQ 1597
Query: 348 VKDAENSAASMMLRALRESTYL 369
K A+ AA L L++ YL
Sbjct: 1598 KKAAQEHAAQGALWYLKQLEYL 1619
>gi|15150411|gb|AAK84929.1| SD01621p [Drosophila melanogaster]
Length = 865
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 125/247 (50%), Gaps = 23/247 (9%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 613 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 672
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY---- 152
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F + QE+ +
Sbjct: 673 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR-IQQENGHCISEEYY 731
Query: 153 ---------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
++ PK L D+ ESIA AI++D + L +W ++ ++ P +
Sbjct: 732 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSV 791
Query: 204 QPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
P+ L +L K GK + R+ R + V+ G+F + + IAK AA
Sbjct: 792 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTV-DVFCKGTFRGIGRNYR--IAKCTAA 848
Query: 261 REALEKL 267
+ AL +L
Sbjct: 849 KCALRQL 855
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 330 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 389
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 390 HLRSKQVANLNLYRLGRR 407
>gi|425626948|gb|AFX89032.1| dicer 1 [Mayetiola destructor]
Length = 2057
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 125/251 (49%), Gaps = 17/251 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E I Y+F ++ L +A+TH+SY+ + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1803 EEHIGYHFNDRSYLLQAMTHASYSQNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1862
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY---- 152
G L+ LR+A ++ A +AV+HGF+K+ RH + +L+D + F + E+N ++
Sbjct: 1863 GALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPSLNDVIDRFVR-IQVENNHSISEEFY 1921
Query: 153 ---------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
++ PK L DI ES+A AI++D + L +W IF +++P +
Sbjct: 1922 LISEEECDEAEDVEVPKALGDIFESVAGAIFLDSNMSLDMVWKIFSNMMKPEIDQFSDSV 1981
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
P+ L +L + K + R+ +V V G IAK AA+ A
Sbjct: 1982 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFGKGTYRGIGRNYRIAKCTAAKCA 2041
Query: 264 LEKLAQSMPVN 274
L +L + +N
Sbjct: 2042 LRQLKKQGLIN 2052
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 44 NYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLR 103
+Y+ + ++ +ALT S+ D + +RLE IGD+ L A++ Y++ Y + G+LS LR
Sbjct: 1508 DYSGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYENVHEGKLSHLR 1567
Query: 104 AANISTEKLARVA 116
+ +S L R+
Sbjct: 1568 SRQVSNLNLYRLG 1580
>gi|195391256|ref|XP_002054279.1| GJ24359 [Drosophila virilis]
gi|194152365|gb|EDW67799.1| GJ24359 [Drosophila virilis]
Length = 2250
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 126/247 (51%), Gaps = 23/247 (9%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E+ + Y F ++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1998 ESSLGYTFSDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2057
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY---- 152
G L+ LR+A ++ A +AV+HGF+K+ RH + L+D + F + QE+ +
Sbjct: 2058 GALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVR-IQQENGHIISEEYY 2116
Query: 153 ---------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
++ PK L D+ ESIA AI++D + L +W ++ +++P +
Sbjct: 2117 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVYSNMMKPEIEQFSNSV 2176
Query: 204 QPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
P+ L +L K GK + R+ R + V+ G+F + + IAK AA
Sbjct: 2177 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTV-DVFCKGTFRGIGRNYR--IAKCTAA 2233
Query: 261 REALEKL 267
+ AL +L
Sbjct: 2234 KCALRQL 2240
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1708 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1767
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1768 HLRSKQVANLNLYRLGRR 1785
>gi|32488296|emb|CAE03362.1| OSJNBb0065L13.5 [Oryza sativa Japonica Group]
gi|116311061|emb|CAH67991.1| OSIGBa0157K09-H0214G12.2 [Oryza sativa Indica Group]
Length = 1604
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 16/239 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E +I Y FK+K LL +A H S++ + YQRLEF+GDA L +++Y++ YP + P
Sbjct: 1164 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKP 1223
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQ++ LR+ + + LA AV+ +K + + L + +F V ++
Sbjct: 1224 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 1283
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
PK L DIVES A+ +D F+L +W + LL+P++T + P+ L +LCQ
Sbjct: 1284 ACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHT--NPMRELRELCQ 1341
Query: 217 KNGKQV--------DIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+G ++ D ++ K NI S + + +A++ + A+ AA+E L KL
Sbjct: 1342 CHGFELGLPKPMKADGEYHVKVEVNIKSKII----ICTAANRNSKAARKFAAQETLSKL 1396
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI---ATTDGVLFITGDEKSR 347
+ A+ L ELC W P +K+ K+EGPSH +KF V + + +L D K +
Sbjct: 1515 KTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQ 1574
Query: 348 VKDAENSAASMMLRALRESTYL 369
K A+ AA L L++ +L
Sbjct: 1575 KKAAQEHAAQGALWCLKQLGHL 1596
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 19 LKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAA 78
LK+ ML+S P E + I+ EALT + S +R E +GDA
Sbjct: 955 LKDVMLSSFP----EASQISASGIL-----------EALTTEKCLERISLERFEVLGDAF 999
Query: 79 LGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
L + + F+ Y LD GQL+ R+ ++ L ++++ ++R
Sbjct: 1000 LKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1047
>gi|251764670|sp|A7LFZ6.1|DCL4_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 4; AltName:
Full=Dicer-like protein 4; Short=OsDCL4; AltName:
Full=Protein SHOOT ORGANIZATION 1
gi|152926631|gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group]
Length = 1657
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 16/239 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E +I Y FK+K LL +A H S++ + YQRLEF+GDA L +++Y++ YP + P
Sbjct: 1217 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKP 1276
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQ++ LR+ + + LA AV+ +K + + L + +F V ++
Sbjct: 1277 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 1336
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
PK L DIVES A+ +D F+L +W + LL+P++T + P+ L +LCQ
Sbjct: 1337 ACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHT--NPMRELRELCQ 1394
Query: 217 KNGKQV--------DIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+G ++ D ++ K NI S + + +A++ + A+ AA+E L KL
Sbjct: 1395 CHGFELGLPKPMKADGEYHVKVEVNIKSKII----ICTAANRNSKAARKFAAQETLSKL 1449
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI---ATTDGVLFITGDEKSR 347
+ A+ L ELC W P +K+ K+EGPSH +KF V + + +L D K +
Sbjct: 1568 KTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQ 1627
Query: 348 VKDAENSAASMMLRALRESTYL 369
K A+ AA L L++ +L
Sbjct: 1628 KKAAQEHAAQGALWCLKQLGHL 1649
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 19 LKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAA 78
LK+ ML+S P E + I+ EALT + S +R E +GDA
Sbjct: 1008 LKDVMLSSFP----EASQISASGIL-----------EALTTEKCLERISLERFEVLGDAF 1052
Query: 79 LGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
L + + F+ Y LD GQL+ R+ ++ L ++++ ++R
Sbjct: 1053 LKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1100
>gi|115459356|ref|NP_001053278.1| Os04g0509300 [Oryza sativa Japonica Group]
gi|113564849|dbj|BAF15192.1| Os04g0509300, partial [Oryza sativa Japonica Group]
Length = 1090
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 16/239 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E +I Y FK+K LL +A H S++ + YQRLEF+GDA L +++Y++ YP + P
Sbjct: 650 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKP 709
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQ++ LR+ + + LA AV+ +K + + L + +F V ++
Sbjct: 710 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 769
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
PK L DIVES A+ +D F+L +W + LL+P++T + P+ L +LCQ
Sbjct: 770 ACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHT--NPMRELRELCQ 827
Query: 217 KNGKQV--------DIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+G ++ D ++ K NI S + + +A++ + A+ AA+E L KL
Sbjct: 828 CHGFELGLPKPMKADGEYHVKVEVNIKSKII----ICTAANRNSKAARKFAAQETLSKL 882
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI---ATTDGVLFITGDEKSR 347
+ A+ L ELC W P +K+ K+EGPSH +KF V + + +L D K +
Sbjct: 1001 KTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQ 1060
Query: 348 VKDAENSAASMMLRALRESTYL 369
K A+ AA L L++ +L
Sbjct: 1061 KKAAQEHAAQGALWCLKQLGHL 1082
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 19 LKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAA 78
LK+ ML+S P E + I+ EALT + S +R E +GDA
Sbjct: 441 LKDVMLSSFP----EASQISASGIL-----------EALTTEKCLERISLERFEVLGDAF 485
Query: 79 LGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
L + + F+ Y LD GQL+ R+ ++ L ++++ ++R
Sbjct: 486 LKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 533
>gi|157279689|dbj|BAF80150.1| SHOOT ORGANIZATION1 [Oryza sativa Japonica Group]
Length = 1631
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 16/239 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E +I Y FK+K LL +A H S++ + YQRLEF+GDA L +++Y++ YP + P
Sbjct: 1191 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKP 1250
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQ++ LR+ + + LA AV+ +K + + L + +F V ++
Sbjct: 1251 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 1310
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
PK L DIVES A+ +D F+L +W + LL+P++T + P+ L +LCQ
Sbjct: 1311 ACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHT--NPMRELRELCQ 1368
Query: 217 KNGKQV--------DIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+G ++ D ++ K NI S + + +A++ + A+ AA+E L KL
Sbjct: 1369 CHGFELGLPKPMKADGEYHVKVEVNIKSKII----ICTAANRNSKAARKFAAQETLSKL 1423
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI---ATTDGVLFITGDEKSR 347
+ A+ L ELC W P +K+ K+EGPSH +KF V + + +L D K +
Sbjct: 1542 KTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQ 1601
Query: 348 VKDAENSAASMMLRALRESTYL 369
K A+ AA L L++ +L
Sbjct: 1602 KKAAQEHAAQGALWCLKQLGHL 1623
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 19 LKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAA 78
LK+ ML+S P E + I+ EALT + S +R E +GDA
Sbjct: 982 LKDVMLSSFP----EASQISASGIL-----------EALTTEKCLERISLERFEVLGDAF 1026
Query: 79 LGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
L + + F+ Y LD GQL+ R+ ++ L ++++ ++R
Sbjct: 1027 LKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1074
>gi|218195189|gb|EEC77616.1| hypothetical protein OsI_16596 [Oryza sativa Indica Group]
Length = 1576
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 16/239 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E +I Y FK+K LL +A H S++ + YQRLEF+GDA L +++Y++ YP + P
Sbjct: 1136 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKP 1195
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQ++ LR+ + + LA AV+ +K + + L + +F V ++
Sbjct: 1196 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 1255
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
PK L DIVES A+ +D F+L +W + LL+P++T + P+ L +LCQ
Sbjct: 1256 ACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHT--NPMRELRELCQ 1313
Query: 217 KNGKQV--------DIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+G ++ D ++ K NI S + + +A++ + A+ AA+E L KL
Sbjct: 1314 CHGFELGLPKPMKADGEYHVKVEVNIKSKII----ICTAANRNSKAARKFAAQETLSKL 1368
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI---ATTDGVLFITGDEKSR 347
+ A+ L ELC W P +K+ K+EGPSH +KF V + + +L D K +
Sbjct: 1487 KTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQ 1546
Query: 348 VKDAENSAASMMLRALRESTYL 369
K A+ AA L L++ +L
Sbjct: 1547 KKAAQEHAAQGALWCLKQLGHL 1568
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 19 LKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAA 78
LK+ ML+S P E + I+ EALT + S +R E +GDA
Sbjct: 927 LKDVMLSSFP----EASQISASGIL-----------EALTTEKCLERISLERFEVLGDAF 971
Query: 79 LGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
L + + F+ Y LD GQL+ R+ ++ L ++++ ++R
Sbjct: 972 LKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1019
>gi|125570782|gb|EAZ12297.1| hypothetical protein OsJ_02188 [Oryza sativa Japonica Group]
Length = 234
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 123/217 (56%), Gaps = 18/217 (8%)
Query: 53 LEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKL 112
+E AL +QRLEF+GDAALGLA + + P LD G L++LR+AN+ST+KL
Sbjct: 24 VERALGGDEAGGRARHQRLEFLGDAALGLAFATIFYRDDPGLDQGDLTVLRSANVSTQKL 83
Query: 113 ARVAV-KHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAA 171
ARVAV + + R++ A D +V F ++V G I+ P+VLADIVE+I
Sbjct: 84 ARVAVRRRLYPLLRRYNCAPQDHEVSRFTKSV----EGPYSGDPIEGPRVLADIVEAIVG 139
Query: 172 AIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIK--HWRK 229
A+Y+D DL+ L + + L EPI+T + L + P+ ++L +L ++ + ++IK WRK
Sbjct: 140 AVYLDSKLDLEVLQKVAKLLCEPIITKKALLEDPE--SMLNELGGEHREDLEIKILAWRK 197
Query: 230 NRKNIASVYVDGSFVASASS-----EQKEIAKLNAAR 261
+A+V DG A +S + E+ KL R
Sbjct: 198 ----VANVVDDGREQAITTSGLGNGSEDEVGKLRTIR 230
>gi|215694849|dbj|BAG90040.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 1058
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 16/239 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E +I Y FK+K LL +A H S++ + YQRLEF+GDA L +++Y++ YP + P
Sbjct: 618 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKP 677
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQ++ LR+ + + LA AV+ +K + + L + +F V ++
Sbjct: 678 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 737
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
PK L DIVES A+ +D F+L +W + LL+P++T + P+ L +LCQ
Sbjct: 738 ACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHT--NPMRELRELCQ 795
Query: 217 KNGKQV--------DIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+G ++ D ++ K NI S + + +A++ + A+ AA+E L KL
Sbjct: 796 CHGFELGLPKPMKADGEYHVKVEVNIKSKII----ICTAANRNSKAARKFAAQETLSKL 850
Score = 44.7 bits (104), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI---ATTDGVLFITGDEKSR 347
+ A+ L ELC W P +K+ K+EGPSH +KF V + + +L D K +
Sbjct: 969 KTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQ 1028
Query: 348 VKDAENSAASMMLRALRESTYL 369
K A+ AA L L++ +L
Sbjct: 1029 KKAAQEHAAQGALWCLKQLGHL 1050
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 19 LKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAA 78
LK+ ML+S P E + I+ EALT + S +R E +GDA
Sbjct: 409 LKDVMLSSFP----EASQISASGIL-----------EALTTEKCLERISLERFEVLGDAF 453
Query: 79 LGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
L + + F+ Y LD GQL+ R+ ++ L ++++ ++R
Sbjct: 454 LKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 501
>gi|157120736|ref|XP_001659747.1| dicer-1 [Aedes aegypti]
gi|108883036|gb|EAT47261.1| AAEL001612-PA [Aedes aegypti]
Length = 2193
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 136/280 (48%), Gaps = 30/280 (10%)
Query: 20 KEAMLTSLPSPE-----MEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRL 71
K +L P+P+ + D E+ + Y F ++ L +A+TH+SY + YQRL
Sbjct: 1916 KSPLLMYAPNPQQTLEHLLDGYSAFEDSLGYQFTDRSYLLQAMTHASYCPNRLTDCYQRL 1975
Query: 72 EFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAA 131
EF+GDA L ++ +++ Q PG L+ LR+A ++ A +AV+H F+K+ RH +
Sbjct: 1976 EFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPG 2035
Query: 132 LDDKVKEFAEAVSQEDNTAVY--------------GGSIKAPKVLADIVESIAAAIYVDI 177
L+D + F Q+DN + ++ PK L D+ ES+A AI++D
Sbjct: 2036 LNDVIDRFVRI--QQDNGHIISEEYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDS 2093
Query: 178 DFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNI 234
+ L +W ++R ++ P + P+ L +L K GK + R+ R +
Sbjct: 2094 NMSLDAVWKVYRSMMGPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTV 2153
Query: 235 ASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVN 274
V+ G+F + + IAK AA+ AL +L + +N
Sbjct: 2154 -EVFGKGTFRGIGRNYR--IAKCTAAKCALRQLKKMGLIN 2190
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
Y N+ N+ + ++ +ALT S+ D + +RLE IGD+ L A++ Y++ Y + G
Sbjct: 1642 YQPNLNNHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYENVHEG 1701
Query: 98 QLSLLRAANISTEKLARVA 116
+LS LR+ +S L R+
Sbjct: 1702 KLSHLRSKQVSNLNLYRLG 1720
>gi|168046558|ref|XP_001775740.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672892|gb|EDQ59423.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 792
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 138/270 (51%), Gaps = 16/270 (5%)
Query: 8 LPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHS---SYTD 64
+P + D + L EA T + + +E I Y FK K LL A + ++T
Sbjct: 517 IPEVIIADIQELMEARNTF-----KDHDIVTLEKKIGYQFKCKSLLLSAFDYGDEVTFTQ 571
Query: 65 ST------SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVK 118
S +QRLEF+GD+ L + + Y +P QL+ LR A +++E A A++
Sbjct: 572 SGVPRGSFQFQRLEFLGDSVLDFLIMRHFVQLYSAFNPEQLNDLRQATVNSENFACTAIR 631
Query: 119 HGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDID 178
HGF+ +++ + L D+++ +A +V +E + S +PK + D+++++A +I +D +
Sbjct: 632 HGFHHYLKRMSPILRDEIELYAASVHREGGSPFGIPSRASPKAIGDLMQTLAGSILLDSN 691
Query: 179 FDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVY 238
FD +W + + LL P+ T + + + P+ LL LC K +++++ + A VY
Sbjct: 692 FDHDLVWKVLKPLLSPLATPKTVMRHPR--RLLEALCHKQDLKLELQTIQLEGAVEARVY 749
Query: 239 VDGSFVASASSEQKEIAKLNAAREALEKLA 268
++ VA++ + +A+ AA A L+
Sbjct: 750 INQICVANSKHYEPTVARRLAAFTAFRSLS 779
>gi|242008637|ref|XP_002425109.1| dicer-1, putative [Pediculus humanus corporis]
gi|212508774|gb|EEB12371.1| dicer-1, putative [Pediculus humanus corporis]
Length = 471
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 134/252 (53%), Gaps = 22/252 (8%)
Query: 36 VFY--VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLA 90
VFY +E + Y FK K LL EA+TH SY + YQRLEF+GDA L ++ Y+
Sbjct: 218 VFYTDLEETLGYTFKRKELLLEAITHPSYVRNRLTPCYQRLEFLGDAILDFLVTVYIQEN 277
Query: 91 YPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEA-------- 142
+ ++PG ++ +R+A ++ LA ++VK+ F+K++ ++++ L+ ++ F +
Sbjct: 278 FKDMNPGLITDIRSALVNNSTLACLSVKYDFHKYLLYTSSPLNKCIENFVKIQISNNHAV 337
Query: 143 -----VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT 197
++ E+N A+ S+ PK L DI ES+A AI++D + L+ +W +F +++
Sbjct: 338 NEQALITLEENDAIMAESVTVPKALGDIFESLAGAIFIDSENSLETVWNVFYKIMKK--E 395
Query: 198 LEELQQQP--QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIA 255
L+E P V +L ++C + + + + Y D VA + K+ A
Sbjct: 396 LDEFTVNPPKTAVRVLHEICGEKPFFETTVYEKVVSVKCSIYYKDEEIVAHGFGDNKKDA 455
Query: 256 KLNAAREALEKL 267
K +A + AL+++
Sbjct: 456 KKSACKMALKQI 467
>gi|170091728|ref|XP_001877086.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648579|gb|EDR12822.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1358
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 123/260 (47%), Gaps = 24/260 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E II +NF+ LL +ALTHSS +S SY RLEFIGDA L + ++F L P
Sbjct: 1077 IERIIGHNFQRPHLLAQALTHSSMQGHESASYGRLEFIGDAILDFMVIQHIFNRDQTLSP 1136
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKV------------KEFAEAVS 144
G L+LL+ A +S LA V V G K + + L + KE+ A
Sbjct: 1137 GALTLLKGAMVSNSALAAVCVSSGLRKHLLFESYQLAGSIEVYANELKARQQKEYLAAER 1196
Query: 145 QEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI----VTLEE 200
+ + Y I+ PK L+D+VESI AIY+ DF +F +L+P +TL+
Sbjct: 1197 EGRSPGQYWLGIEPPKALSDVVESIIGAIYISDDFTPIGAERLFNNVLKPFYDKHITLQT 1256
Query: 201 LQQQPQPVTLLFKLCQKNGKQV-DIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNA 259
L P +LF+L Q G + +I K + V V +ASA +A A
Sbjct: 1257 LSH--HPTKILFELFQAQGCHLFEISKENNAEKTLCHVLVHEVILASAEDVMPTLAARQA 1314
Query: 260 ---AREALEKLAQSMPVNCD 276
A +AL+ A+ M CD
Sbjct: 1315 SIFALDALQGDAEFMRRICD 1334
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 6 FTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS 65
FTLP +T+ LL M ++D + E +N F + + E+ L S S
Sbjct: 791 FTLPASTLRTALLLPSIMR------RIDDLLIVKE--LNARFFDHAIREDLLHVSLCAPS 842
Query: 66 T----SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKL 112
+Y+RLE +GDA L + YVF+A P + G L + R IS + L
Sbjct: 843 AGLEYNYERLELLGDAFLKYLCTIYVFVAEPTQNEGSLHIARQKLISNKSL 893
>gi|255565079|ref|XP_002523532.1| Ribonuclease III, putative [Ricinus communis]
gi|223537239|gb|EEF38871.1| Ribonuclease III, putative [Ricinus communis]
Length = 1633
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 123/237 (51%), Gaps = 13/237 (5%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E+ +++ F N+ L+ +A H SY YQRLEF+GDA L +++Y+F YP+L P
Sbjct: 1210 LEDSLDHQFVNRGLVLQAFVHPSYNKHGGGCYQRLEFLGDAVLDYLITSYLFSVYPKLKP 1269
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A VAV F +F+ + L + ++ + V + AV S+
Sbjct: 1270 GLLTDLRSALVNNRAFAIVAVDRSFNEFLICDSGNLSEAIETYVNFVKR---PAVEKDSL 1326
Query: 157 ---KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
K PKVL D+VES AI++D FDL +W + L+PI+ + P L +
Sbjct: 1327 EGPKCPKVLGDLVESCIGAIFLDTGFDLNCIWKLMLSFLDPILNSSNVLL--NPFRELHE 1384
Query: 214 LCQKNGKQVDIKHWRKNRKNIASVYVDGSFV---ASASSEQKEIAKLNAAREALEKL 267
C+ + ++ +++ + V G + ASA++ K+ A A+ + + KL
Sbjct: 1385 FCESHKWKLQFPTLKRDMNFLVEAKVTGKDICLDASANNSNKKEAIRIASEQIIVKL 1441
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 23/160 (14%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EALT + S +RLE +GDA L A+ ++FL + LD G+L+ R+ ++ L +
Sbjct: 1020 EALTTERCQERLSLERLEILGDAFLKFAVGRHLFLLHDTLDEGELTRKRSNAVNNSNLLK 1079
Query: 115 VAVKHGFYKFVR-------------HSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA--- 158
+A + ++R H + K E + S N +I+
Sbjct: 1080 LASRRNLQVYIRDQPFDPRQFFALGHPCPVICTKESEGSIHSSNRSNAKGQENTIEVRCS 1139
Query: 159 -------PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGL 191
K +AD+VE++ A VD F ++ + G+
Sbjct: 1140 RGHHWLYKKTIADVVEALVGAFIVDSGFRAATAFLKWLGI 1179
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 292 AAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI---ATTDGVLFITGDEKSRV 348
+AK +LH++C W P ++ +EGPSH K F V + A D +L G + +
Sbjct: 1550 SAKSRLHDICAANCWKPPLFECCYEEGPSHLKSFSYKVIVEIEAAPDMILECFGAPREKK 1609
Query: 349 KDAENSAASMMLRALRESTYL 369
K A AA L L+ YL
Sbjct: 1610 KAAAEHAAEGALWYLQHVGYL 1630
>gi|302826370|ref|XP_002994673.1| hypothetical protein SELMODRAFT_432577 [Selaginella moellendorffii]
gi|300137177|gb|EFJ04260.1| hypothetical protein SELMODRAFT_432577 [Selaginella moellendorffii]
Length = 176
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 103/177 (58%), Gaps = 3/177 (1%)
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
L PG L+ LR+A ++ + AR+ V+HG ++ ++H LD ++++F + V ++ + + +
Sbjct: 1 LPPGTLTDLRSAAVNNKWFARLVVRHGLHQHLQHGLVELDCEIRKFVQNVKEKPDASCFE 60
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
+ APKVL D++ESI AI+VD +FDL++LW + LL P+VT L+ PV +L +
Sbjct: 61 -DLSAPKVLGDLLESITGAIFVDTNFDLERLWRVVLPLLSPLVTPATLRF--HPVHILME 117
Query: 214 LCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270
LC + G +V + + + S V ++ + ++ AK++AA + L L S
Sbjct: 118 LCARKGMKVSFFRTEATTTEVRVTFGEESLVETSQEKPRKSAKIDAALKMLASLQTS 174
>gi|403418950|emb|CCM05650.1| predicted protein [Fibroporia radiculosa]
Length = 1373
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 122/264 (46%), Gaps = 25/264 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
VE I+ F +LL +ALTH+S D +Y RLEF+GDA L + +++ P L P
Sbjct: 1077 VETIVGNVFARPQLLAQALTHTSIGAHDDRTYDRLEFVGDAVLDFLVVQFIYDRNPGLSP 1136
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKV------------KEFAEAVS 144
L+LL++A +S LA V G + +RH+A + V KE+ A S
Sbjct: 1137 NGLTLLKSAMVSNHALAAFCVHSGLHIHLRHAAPEVGTAVQVYVRKLGEVREKEYRLAQS 1196
Query: 145 QEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI----VTLEE 200
+ Y ++ PK L+D+VES+ A+Y+ DF + F G ++P + L+
Sbjct: 1197 ERRLPGQYWLALDPPKTLSDVVESVIGALYISDDFQETSVRAFFDGTIKPFYEYHIRLQS 1256
Query: 201 LQQQPQPVTLLFKLCQKNG-KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNA 259
L P P T LF+L Q G Q I R++ + V V +ASA A
Sbjct: 1257 L--CPHPTTTLFELLQSFGCCQHGIAKEREDYRTRCEVVVHDVVLASALEATSAAATRTV 1314
Query: 260 AREALEKL---AQSMPVNCDVCEI 280
A AL+ L M CD C +
Sbjct: 1315 ATLALDALDGDPHFMIRTCD-CRV 1337
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 37/169 (21%)
Query: 43 INYNFKNKRLLEE----ALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+N +F +LEE ALT S + + Y+RLE GDA L S Y F+ P + G
Sbjct: 860 LNAHFFQHTILEEHLIAALTPPSASVAFDYERLELFGDAFLKYVASIYCFVTTPHVREGA 919
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVR---------------HSA--AALDDKVKEFAE 141
L + R IS + L A + G +++ HS+ D K + +
Sbjct: 920 LHMARQKIISNKALLTGANRIGLPPYIQSKPFVAKTWTPITSPHSSRDPINDQKAVHYND 979
Query: 142 AVSQEDNTAVYGGSIKAP---------------KVLADIVESIAAAIYV 175
AV+ D +A+ S ++ K +AD+VE+I A Y+
Sbjct: 980 AVAG-DTSAIQTTSKRSKKQKQQDEQNIQWLGDKTVADVVEAIIGAAYL 1027
>gi|57236094|gb|AAW48724.1| dicer-1 [Aedes aegypti]
Length = 2192
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 135/280 (48%), Gaps = 31/280 (11%)
Query: 20 KEAMLTSLPSPE-----MEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRL 71
K +L P+P+ + D E+ + Y+ LL+ A+TH+SY + YQRL
Sbjct: 1916 KSPLLMYAPNPQQTLEHLLDGYSAFEDSLGYHHSRSYLLQ-AMTHASYCPNRLTDCYQRL 1974
Query: 72 EFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAA 131
EF+GDA L ++ +++ Q PG L+ LR+A ++ A +AV+H F+K+ RH +
Sbjct: 1975 EFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPG 2034
Query: 132 LDDKVKEFAEAVSQEDNTAVY--------------GGSIKAPKVLADIVESIAAAIYVDI 177
L+D + F Q+DN + ++ PK L D+ ES+A AI++D
Sbjct: 2035 LNDVIDRFVRI--QQDNGHIISEEYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDS 2092
Query: 178 DFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNI 234
+ L +W ++R ++ P + P+ L +L K GK + R+ R +
Sbjct: 2093 NMSLDAVWKVYRSMMGPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTV 2152
Query: 235 ASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVN 274
V+ G+F + + IAK AA+ AL +L + +N
Sbjct: 2153 -EVFGKGTFRGIGRNYR--IAKCTAAKCALRQLKKMGLIN 2189
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
Y N+ N+ + ++ +ALT S+ D + +RLE IGD+ L A++ Y++ Y + G
Sbjct: 1642 YQPNLNNHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYENVHEG 1701
Query: 98 QLSLLRAANISTEKLARVA 116
+LS LR+ +S L R+
Sbjct: 1702 KLSHLRSKQVSNLNLYRLG 1720
>gi|312384317|gb|EFR29067.1| hypothetical protein AND_02261 [Anopheles darlingi]
Length = 1651
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 103/198 (52%), Gaps = 22/198 (11%)
Query: 12 TVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDST---SY 68
TV +Y+ +E + L +PE +E + Y F+N+ L +A TH++YT +T SY
Sbjct: 1383 TVLNYQDERETIDRLLINPEK------IERTVGYKFRNRTFLLQAFTHATYTTNTLTKSY 1436
Query: 69 QRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHS 128
++LEF+GDA L ++ Y+F P + PGQL+ LR+A ++ LA V V+ + ++
Sbjct: 1437 EQLEFLGDAVLDFLITLYIFERNPHMSPGQLTDLRSALVNNVTLACVLVRFRLHHYILSQ 1496
Query: 129 AAALDDKVKEFAEAVSQ-------------EDNTAVYGGSIKAPKVLADIVESIAAAIYV 175
+ L DK+ +F E Q E++ + PKVL D+ E++ AIY+
Sbjct: 1497 SPMLTDKIDKFVEVQGQKRNRIGDWVRLLTEESETPLAEYVDVPKVLGDVFEALIGAIYL 1556
Query: 176 DIDFDLQKLWMIFRGLLE 193
D DL W I LL+
Sbjct: 1557 DSGCDLVTTWRICYSLLQ 1574
>gi|193582606|ref|XP_001943370.1| PREDICTED: endoribonuclease Dcr-1-like [Acyrthosiphon pisum]
Length = 1626
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 133/276 (48%), Gaps = 22/276 (7%)
Query: 17 RLLKEAMLTSLPSPEME-----DAVFYVENIINYNFKNKRLLEEALTHSSYTDST---SY 68
+L +L ++ PE E D E + Y F+++ L +A+TH+SY + Y
Sbjct: 1350 KLPPSPLLRNVNDPEGELTKLMDGFESFEQHLGYYFQDRSYLLQAMTHASYYPNCLTDCY 1409
Query: 69 QRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHS 128
QRLEF+GDA L ++ +++ + PG L+ LR+A ++ A +AVK+GF+K+++H
Sbjct: 1410 QRLEFLGDAVLDYLITRHLYEDKRRHPPGALTDLRSALVNNTIFASLAVKNGFHKYLKHL 1469
Query: 129 AAALDDKVKEFAEAVSQEDNTAV-----YGG--------SIKAPKVLADIVESIAAAIYV 175
+ L + V F A+ +E+ + + G ++APKVL DI ES+A AIY+
Sbjct: 1470 SPGLSEVVYRFV-AIQEENGHTIDEEFCFSGEDDFEDAEDVEAPKVLGDIFESVAGAIYL 1528
Query: 176 DIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA 235
D + L +W ++ ++E + PV L +L K + R+
Sbjct: 1529 DSNMSLDAVWKVYHKIMENEIKQFSKNVPISPVRELLELEPNTAKFSKPEKLVDGRRVRV 1588
Query: 236 SVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSM 271
V + G V IAK AA+ AL L + +
Sbjct: 1589 IVEILGKGVFKGIGRNYRIAKCTAAKCALNHLKEKI 1624
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
+L +ALT ++ D +RLE IGD+ L A++ Y++ + + G LS LR+ ++S
Sbjct: 1190 ILLQALTTANAIDGYDLERLETIGDSFLKYAVTAYLYCTHNNVHEGILSDLRSNHVSNLN 1249
Query: 112 LARVA 116
L R+
Sbjct: 1250 LYRLG 1254
>gi|242018047|ref|XP_002429494.1| dicer-1, putative [Pediculus humanus corporis]
gi|212514432|gb|EEB16756.1| dicer-1, putative [Pediculus humanus corporis]
Length = 2179
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/271 (27%), Positives = 129/271 (47%), Gaps = 22/271 (8%)
Query: 20 KEAMLTSLPSPEME-----DAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRL 71
K ++ +P+PE E E I Y F+++ L +ALTH+SY + YQRL
Sbjct: 1893 KRPLICHIPNPEGELEKLLRGFDIFEESIKYRFRDRSYLLQALTHASYYPNRLTDCYQRL 1952
Query: 72 EFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAA 131
EF+GDA L ++ +++ PG L+ LR+A ++ A +AV+H F+K+ RH +
Sbjct: 1953 EFLGDAVLDYLITRHLYEDSRHHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLCPS 2012
Query: 132 LDDKVKEFAEAVSQEDNTAV-------------YGGSIKAPKVLADIVESIAAAIYVDID 178
L++ V F Q + A+ ++ PK L D+ ES+A AI++D
Sbjct: 2013 LNEVVDRFVR-FQQANGHAISEEFYLIEEEECEEAEDVEVPKALGDVFESVAGAIFLDSG 2071
Query: 179 FDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVY 238
L +W ++ +++ + L P+ LF+L + + + R+ SV
Sbjct: 2072 MSLDAVWRVYYRIMKNEIELFSTNVPKSPIRELFELEPETAQFGKPEKLADGRRVRVSVE 2131
Query: 239 VDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
V G + + IAK AA+ AL++L +
Sbjct: 2132 VFGKGIFNGIGRNYRIAKCTAAKCALKQLKR 2162
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ +ALT S+ D + +RLE IGD+ L A++ Y++ Y + G+LS LR+ +S
Sbjct: 1641 LILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCIYENVHEGKLSHLRSKQVSNFN 1700
Query: 112 LARVAVK 118
L R+ K
Sbjct: 1701 LYRLGRK 1707
>gi|413933740|gb|AFW68291.1| hypothetical protein ZEAMMB73_565304 [Zea mays]
Length = 462
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 124/245 (50%), Gaps = 26/245 (10%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS---TSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
++ ++ Y F + LL EALTHSSY + +RLEF+GDA L L+ Y + YP
Sbjct: 222 LQTMLKYVFYDTSLLVEALTHSSYNITGITACNERLEFLGDAVLDYILTYYFYRKYPNCT 281
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAA-----LDDKVKEFAEAVSQEDNTA 150
P L+ LR A+++ A AVK G +K + HS++ L++ + F+ +
Sbjct: 282 PALLTNLRKASVNNCCYAHAAVKAGLHKHILHSSSKQMVNDLENSGRSFS------GPSH 335
Query: 151 VYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL 210
+ I P+ LAD+ E+IA AIYVD D + +W R LLEP+ T + +P PV+
Sbjct: 336 GWEAGISLPEDLADLFEAIAGAIYVDSGNDKEVVWSAIRRLLEPLATPGTM--EPDPVSE 393
Query: 211 LFKLCQKNGKQVDIKHWRKNRKNIASVY--------VDGSFVASASSEQKEIAKLNAARE 262
L +LC+ K + R ++A V + + + +++A++ AA+
Sbjct: 394 LKELCEH--KHYPKPSYSPTRDSVAGVTRVVAQVTAARTVYSGTGTGRNQDVAEVLAAKA 451
Query: 263 ALEKL 267
L+K+
Sbjct: 452 LLKKI 456
>gi|224088236|ref|XP_002308384.1| dicer-like protein [Populus trichocarpa]
gi|222854360|gb|EEE91907.1| dicer-like protein [Populus trichocarpa]
Length = 1588
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 153/378 (40%), Gaps = 81/378 (21%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVF 88
+P M+ A +EN++ + F K LL +A H S+ + + + I A+ L +
Sbjct: 1175 NPSMDLAT--LENLLGHQFLYKGLLLQAFVHPSHKNGGEFGVM--ILQFAMTLMFPPEIG 1230
Query: 89 LA----YPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS 144
+ YP++ PG L+ LR+ ++ A VAV F++++ + AL K+F + V
Sbjct: 1231 VPWRCFYPKMKPGHLTDLRSVLVNNRAFASVAVDRSFHEYLICDSDALSAATKKFVDFVR 1290
Query: 145 QEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQ 204
+ K PKVL D+VES AI +D FDL +W I L+PI + LQ
Sbjct: 1291 TPKSERRLLEGPKCPKVLGDLVESSVGAILLDTGFDLNHIWKIMLSFLDPISSFSNLQI- 1349
Query: 205 PQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDG---SFVASASSEQKE-------- 253
PV L +LCQ + ++ +K R V + G + ASAS+ K+
Sbjct: 1350 -NPVRELKELCQSHNWDFEVPASKKGRTFSVDVTLSGKDMNISASASNSNKKEAIRMASE 1408
Query: 254 -----------IAKLNAAREALE-----------------------------KLAQSMPV 273
I N+ E L K+ + +
Sbjct: 1409 KIYARLKDQGLIPMTNSLEEVLRNSQKMEAKLIGYDETPIDVALDAHGFENSKIQEPFGI 1468
Query: 274 NC-----DVCEI-FDDID--------------EKFEIEAAKQKLHELCGKKKWPKPSYKI 313
NC D C F+ +D K ++ A+ +L E+C W PS++
Sbjct: 1469 NCSYEVRDSCPPRFEAVDAWSLSPLDFTGGQPSKVDLGTARSRLREICAANSWKPPSFEC 1528
Query: 314 EKDEGPSHDKKFMSAVQI 331
+EGPSH K F V +
Sbjct: 1529 CTEEGPSHLKSFTYKVVV 1546
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRA 104
EALT + S +RLE +GDA L A+ + FL + LD G+L+ R+
Sbjct: 1009 EALTTEKCQERLSLERLETLGDAFLKFAVGRHFFLLHDTLDEGELTRKRS 1058
>gi|58382645|ref|XP_312076.2| AGAP002836-PA [Anopheles gambiae str. PEST]
gi|55241936|gb|EAA07793.2| AGAP002836-PA [Anopheles gambiae str. PEST]
Length = 2256
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 126/265 (47%), Gaps = 40/265 (15%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SY+ + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1983 EQALGYRFRDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRRQHSP 2042
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF-------AEAVSQE--- 146
G L+ LR+A ++ A +AV+HGF+K+ H + L + + F +++E
Sbjct: 2043 GALTDLRSALVNNTIFASLAVRHGFHKYFLHLSPGLQEVIDRFVRIQQENGHRITEEEYY 2102
Query: 147 -----DNTAVYGG----------------SIKAPKVLADIVESIAAAIYVDIDFDLQKLW 185
D YG ++ PK L D+ ESIA AI++D D L +W
Sbjct: 2103 LPDEDDELGEYGAMGEDGPGEGRGVGEAEDVEVPKALGDVFESIAGAIFLDSDMSLDTVW 2162
Query: 186 MIFRGLLEPIVTLEELQQQPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGS 242
++R ++ P + P+ L ++ K GK + R+ R + V+ G+
Sbjct: 2163 KVYRKMMGPEIEKFSSSVPKSPIRELLEMEPETAKFGKPEKLTDGRRVRVTV-EVFGKGT 2221
Query: 243 FVASASSEQKEIAKLNAAREALEKL 267
F + + IAK AA+ AL +L
Sbjct: 2222 FRGIGRNYR--IAKCTAAKCALRQL 2244
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
++ +ALT S+ D + +RLE IGD+ L A++ Y++ Y + G+LS LR+ +S
Sbjct: 1666 IILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCRYDNVHEGKLSHLRSKQVSNLN 1725
Query: 112 LARVAVK 118
L R+ +
Sbjct: 1726 LYRLGRR 1732
>gi|29424049|gb|AAO73809.1| dicer-1 [Anopheles gambiae]
Length = 2259
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 126/265 (47%), Gaps = 40/265 (15%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SY+ + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1986 EQALGYRFRDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRRQHSP 2045
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF-------AEAVSQE--- 146
G L+ LR+A ++ A +AV+HGF+K+ H + L + + F +++E
Sbjct: 2046 GALTDLRSALVNNTIFASLAVRHGFHKYFLHLSPGLQEVIDRFVRIQQENGHRITEEEYY 2105
Query: 147 -----DNTAVYGG----------------SIKAPKVLADIVESIAAAIYVDIDFDLQKLW 185
D YG ++ PK L D+ ESIA AI++D D L +W
Sbjct: 2106 LPDEDDELGEYGAMGEDGPGEGRGVGEAEDVEVPKALGDVFESIAGAIFLDSDMSLDTVW 2165
Query: 186 MIFRGLLEPIVTLEELQQQPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGS 242
++R ++ P + P+ L ++ K GK + R+ R + V+ G+
Sbjct: 2166 KVYRKMMGPEIEKFSSSVPKSPIRELLEMEPETAKFGKPEKLTDGRRVRVTV-EVFGKGT 2224
Query: 243 FVASASSEQKEIAKLNAAREALEKL 267
F + + IAK AA+ AL +L
Sbjct: 2225 FRGIGRNYR--IAKCTAAKCALRQL 2247
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
++ +ALT S+ D + +RLE IGD+ L A++ Y++ Y + G+LS LR+ +S
Sbjct: 1666 IILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCRYDNVHEGKLSHLRSKQVSNLN 1725
Query: 112 LARVAVK 118
L R+ +
Sbjct: 1726 LYRLGRR 1732
>gi|156368540|ref|XP_001627751.1| predicted protein [Nematostella vectensis]
gi|156214670|gb|EDO35651.1| predicted protein [Nematostella vectensis]
Length = 199
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 96/185 (51%), Gaps = 13/185 (7%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E I Y F NK L +ALTH+SY+ + YQRLEF+GDA L ++ ++ LDP
Sbjct: 5 EKRIGYEFSNKLYLIQALTHASYSQNRLTDCYQRLEFLGDALLDFLVTELIYSRNTNLDP 64
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG-- 154
G+L+ LR A ++ A +AVKHGF K + + +K+ F + V + + +
Sbjct: 65 GELTDLRQALVNNNIFAEIAVKHGFNKSLFQMSPEWFNKIGVFVDHVKEREARGIQDPFL 124
Query: 155 --------SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQ 206
I+APKVL DI ES+A AI++D DL W ++ +L+P +
Sbjct: 125 TLSNDDEEGIEAPKVLGDIFESVAGAIFLDSGMDLVLTWRVYYRMLKPYIDAYSADVPKN 184
Query: 207 PVTLL 211
PV L+
Sbjct: 185 PVRLI 189
>gi|347968645|ref|XP_003436256.1| AGAP002836-PB [Anopheles gambiae str. PEST]
gi|333467908|gb|EGK96757.1| AGAP002836-PB [Anopheles gambiae str. PEST]
Length = 2336
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 126/265 (47%), Gaps = 40/265 (15%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SY+ + YQRLEF+GDA L ++ +++ Q P
Sbjct: 2063 EQALGYRFRDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRRQHSP 2122
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF-------AEAVSQE--- 146
G L+ LR+A ++ A +AV+HGF+K+ H + L + + F +++E
Sbjct: 2123 GALTDLRSALVNNTIFASLAVRHGFHKYFLHLSPGLQEVIDRFVRIQQENGHRITEEEYY 2182
Query: 147 -----DNTAVYGG----------------SIKAPKVLADIVESIAAAIYVDIDFDLQKLW 185
D YG ++ PK L D+ ESIA AI++D D L +W
Sbjct: 2183 LPDEDDELGEYGAMGEDGPGEGRGVGEAEDVEVPKALGDVFESIAGAIFLDSDMSLDTVW 2242
Query: 186 MIFRGLLEPIVTLEELQQQPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGS 242
++R ++ P + P+ L ++ K GK + R+ R + V+ G+
Sbjct: 2243 KVYRKMMGPEIEKFSSSVPKSPIRELLEMEPETAKFGKPEKLTDGRRVRVTV-EVFGKGT 2301
Query: 243 FVASASSEQKEIAKLNAAREALEKL 267
F + + IAK AA+ AL +L
Sbjct: 2302 FRGIGRNYR--IAKCTAAKCALRQL 2324
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
++ +ALT S+ D + +RLE IGD+ L A++ Y++ Y + G+LS LR+ +S
Sbjct: 1746 IILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCRYDNVHEGKLSHLRSKQVSNLN 1805
Query: 112 LARVAVK 118
L R+ +
Sbjct: 1806 LYRLGRR 1812
>gi|167234451|ref|NP_001107840.1| Dicer-2 [Tribolium castaneum]
gi|270002830|gb|EEZ99277.1| hypothetical protein TcasGA2_TC001108 [Tribolium castaneum]
Length = 1623
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 98/173 (56%), Gaps = 22/173 (12%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E + Y F N+ L +ALTHSSY+ + SY+RLEF+GDA L ++ Y+F L+
Sbjct: 1374 IEQRLGYTFTNRAFLLQALTHSSYSPNRITLSYERLEFLGDAVLDFLITCYIFEHCGHLE 1433
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED-------- 147
PGQ++ LR++ ++ A + V+ GF+KF+ + L + +FA+ ++ ++
Sbjct: 1434 PGQVTDLRSSLVNNNTFASLVVRCGFHKFLLMMNSNLQGHIDKFADYLASKNYVIDDEVL 1493
Query: 148 --------NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
N A Y + PKVL DI E++A AIY+D + DL+ +W +F ++
Sbjct: 1494 ILLEEDEMNIAEY---VDVPKVLGDIFEALAGAIYLDSNKDLKTVWRVFYKII 1543
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
+ALT + D + +RLE +GD+ L S Y+ +P + G+ + L+ +S + L
Sbjct: 1148 QALTAAEANDIVNLERLETLGDSFLKFVASLYIIFKFPTYNEGKSTTLKGKLVSNKNLYY 1207
Query: 115 VAVKHGFYKFVRHSAAALDDKV 136
+ V+ +++S + D V
Sbjct: 1208 LGVRKNLGGILKNSDLSPSDWV 1229
>gi|402217569|gb|EJT97649.1| ribonuclease III [Dacryopinax sp. DJM-731 SS1]
Length = 1400
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 127/267 (47%), Gaps = 26/267 (9%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSY--TDSTSYQRLEFIGDAALGLALSNY 86
P + V VE I+ + FKN L ALTHSS TD Y+RLEFIGDA L
Sbjct: 1093 GPLSQPKVEAVEAILGHKFKNPFLAATALTHSSMSSTDFPCYERLEFIGDAILDFVTVRL 1152
Query: 87 VFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE 146
+++ + +L G L++L+ A +S LA V G + ++ H + L + V +A+ +++
Sbjct: 1153 LYMRWGELHEGWLTMLKGAIVSNAALAAFCVDLGLHHYIIHDSPHLVETVSSYAKEITKA 1212
Query: 147 DNTAV------------YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194
+ Y +++ PKVL+DIVE++ AIYV FD +F L +P
Sbjct: 1213 KEEDLAAAAAEDRAPGEYWVTLEPPKVLSDIVEALLGAIYVSDSFDPSGYENVFDRLFKP 1272
Query: 195 I----VTLEELQQQPQPVTLLFKLCQKNG-KQVDIKHWRKNRKNIASVYVD----GSFVA 245
V+L L Q P +LLF L Q+ G + ++ R + V D G +A
Sbjct: 1273 FFMKRVSLNTLSQ--HPTSLLFALLQQRGCHRFELTKTRAETDLLTEVQCDFVLHGKVLA 1330
Query: 246 SASSEQKEIAKLNAAREALEKLAQSMP 272
++ A A+ ALE L Q+ P
Sbjct: 1331 TSIHSSSAGASRRASAMALE-LIQTQP 1356
>gi|170049284|ref|XP_001855187.1| endoribonuclease Dicer [Culex quinquefasciatus]
gi|167871117|gb|EDS34500.1| endoribonuclease Dicer [Culex quinquefasciatus]
Length = 1665
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 96/174 (55%), Gaps = 19/174 (10%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E I++Y FK++ L +ALTH+SY + SYQ+LEF+GDA L +S Y++ P +
Sbjct: 1413 IERILDYTFKDRTYLLQALTHASYPTNRITGSYQQLEFVGDAVLDFLISAYIYEQNPTMS 1472
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA--------EAVSQ-- 145
PGQL+ LR+A ++ LA + V+HG + ++ +A+L D V +F E Q
Sbjct: 1473 PGQLTDLRSALVNNITLACILVRHGLHLYILSESASLTDTVSKFVAFQEAHKHEITDQVN 1532
Query: 146 ---EDNTAVYGGS---IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLE 193
E++ G + PK L D+ ES+ A+++D DL+ W + GL+
Sbjct: 1533 LLSEESERCQGAMAEFVDVPKALGDVFESLIGAVFLDSGNDLEVTWRVIYGLMH 1586
>gi|452979125|gb|EME78888.1| hypothetical protein MYCFIDRAFT_43585 [Pseudocercospora fijiensis
CIRAD86]
Length = 1516
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 125/270 (46%), Gaps = 22/270 (8%)
Query: 20 KEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSS----YTDSTSYQRLEFIG 75
K A T + +D VE Y F RLL A H S Y SYQRLEF+G
Sbjct: 1198 KPAYQTGESTAVQKDLALRVEKEHAYTFTYPRLLYSAFMHPSVPYMYEKVPSYQRLEFLG 1257
Query: 76 DAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDK 135
DA L +A Y+F YP DP L+ + A +S + L + V GF+K +RH A L+ +
Sbjct: 1258 DALLDMASITYLFYKYPDKDPQWLTEHKMAMVSNKFLGALCVDIGFHKHLRHHHATLEHQ 1317
Query: 136 VKEFAEAVSQEDNTAVYG------GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFR 189
V+++A + + A G PK L DIVE+ A+++D +FD ++ F
Sbjct: 1318 VRDYATELLEAKRIAGKGCVDYWTTVSDPPKCLPDIVEAYIGAMFIDSNFDYNQVQRFFE 1377
Query: 190 GLLEPI---VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRK--------NRKN-IASV 237
++ +T+ + P T L + Q VD + + RK+ +A V
Sbjct: 1378 EHVKCYFGDMTIYDSFANNHPCTHLHNMLQTTFGCVDYRLMARELPSVDGMERKDVVAVV 1437
Query: 238 YVDGSFVASASSEQKEIAKLNAAREALEKL 267
V +A ++ + AKL AA +ALEKL
Sbjct: 1438 MVHDKIIAHSAGKSGRYAKLRAANKALEKL 1467
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 14/123 (11%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEFIGD L A + F+ P + + + R + + L + A++ Y+++R
Sbjct: 1038 NYERLEFIGDTFLKTATTISTFIMNPNENEFEFHVRRMLMLCNKNLYQTALQLKLYEYIR 1097
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIK-----------APKVLADIVESIAAAIYV 175
A ++ + E + T V G K K +AD+ E++ A Y+
Sbjct: 1098 SLAF---NRRYWYPEGLKLLVGTGVVKGQEKEMYHEPREVGLGEKTIADVCEALIGAAYL 1154
Query: 176 DID 178
D
Sbjct: 1155 SHD 1157
>gi|353236820|emb|CCA68807.1| hypothetical protein PIIN_02669 [Piriformospora indica DSM 11827]
Length = 1466
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 146/307 (47%), Gaps = 32/307 (10%)
Query: 28 PSPEM----EDAVF-YVENIINYNFKNKRLLEEALTHSSY--TDSTSYQRLEFIGDAALG 80
P P++ ED V VE + F +L +ALTH+S D T Y+RLEF+GDA L
Sbjct: 1153 PPPDLTITLEDNVLETVEATVGAKFHRPHILAQALTHTSARGNDMTCYERLEFLGDAVLD 1212
Query: 81 LALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFV----RHSAAALDDKV 136
+ ++F + +L PG L++L+ A +S LA ++V +G +KF+ ++ A+D+ V
Sbjct: 1213 FLVIQHIFDLHGRLTPGALTMLKGAMVSNSALAAISVHYGLHKFLVVESKNVKKAIDEYV 1272
Query: 137 K--------EFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIF 188
E+A A + Y ++ PK +AD+VESI A+YV F L ++
Sbjct: 1273 PAVEEKQRLEYAAADEEGRLKGQYWLEVEPPKSVADVVESILGALYVSDGFKLTGAQAMY 1332
Query: 189 RGLLEPI----VTLEELQQQPQPVTLLFKLCQKNGKQV--DIKHWRKNRKNI--ASVYVD 240
LL P ++L+ L P +LF+L Q G Q KH ++ + V V
Sbjct: 1333 DTLLRPFYDQHISLKTLSH--HPTKILFELFQSQGCQAFEITKHIDEHDGELIRCEVVVH 1390
Query: 241 GSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHEL 300
+A+ + + A A+ EAL+ L +C+ +++ + A + LH
Sbjct: 1391 NVILAAGVDQSQNFAARRASFEALDALEGDPDFMSRLCDCRSKAEQRKAAKRAAKALH-- 1448
Query: 301 CGKKKWP 307
GK + P
Sbjct: 1449 -GKGERP 1454
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 6 FTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVE-NIINYNFK-NKRLLEEALTHSSYT 63
FT+P +T+ LL M +ED + E N + +N + ++ L+ A+T S +
Sbjct: 902 FTIPASTMRTLSLLPSIM------KRVEDTLLVRELNAMYFNNEIDESALQAAITAPSAS 955
Query: 64 DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYK 123
Y+RLE +GDA L S Y+F+ P G L L R IS L A K G +
Sbjct: 956 MEVDYERLELLGDAYLKYLSSIYLFVTNPNKHEGILHLARQKIISNRALLVNADKSGLPQ 1015
Query: 124 FVR 126
+++
Sbjct: 1016 YIQ 1018
>gi|357619534|gb|EHJ72068.1| putative dicer 1 [Danaus plexippus]
Length = 754
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 125/252 (49%), Gaps = 21/252 (8%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+EN + Y F+++ LL ALTH+S ++T YQRLEF+GDA L ++ +++ +
Sbjct: 505 LENTLQYRFRDRSLLLTALTHASCHNNTLTDCYQRLEFLGDAILDYLITRHLYEDPRRHS 564
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF-------AEAVSQE-- 146
PG L+ LR+A ++ A +A +HGF+K+ RH + L++ + ++ ++S+E
Sbjct: 565 PGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNEVLTKYVKIQEENGHSISEEHY 624
Query: 147 ---DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
++ ++ PK L D+ ES+A AI++D L +W GLL +
Sbjct: 625 LIQEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLAAVWRAVGGLLRAELDAFSAAA 684
Query: 204 QPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
PV L + K GK + R+ R + V+ GSF + + IAK AA
Sbjct: 685 PKSPVRELLEAEPDTAKFGKPERLADGRRVRVCV-EVFGRGSFKGVGRNYR--IAKGTAA 741
Query: 261 REALEKLAQSMP 272
R AL L P
Sbjct: 742 RCALRHLRSVRP 753
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRA 104
+ALT S+ D + +RLE IGD+ L A++ Y++ A P + G+LS +R+
Sbjct: 296 QALTMSNANDGINLERLETIGDSFLKFAITAYLYCALPAVHEGKLSHMRS 345
>gi|307195788|gb|EFN77602.1| Endoribonuclease Dcr-1 [Harpegnathos saltator]
Length = 1807
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 130/279 (46%), Gaps = 38/279 (13%)
Query: 20 KEAMLTSLPSPE-----MEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRL 71
+ +L +P PE M D +E I Y F++ L +A TH+SY + YQRL
Sbjct: 1529 QNPLLRYIPDPEGELCMMLDGYEELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRL 1588
Query: 72 EFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAA 131
EF+GDA L ++ +++ Q PG L+ LR+A ++ A +AV+ GF+K+ RH +
Sbjct: 1589 EFLGDAVLDYLITRHLYEDSRQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPG 1648
Query: 132 LDDKVKEFAEAVSQEDNTAVYGGSIK------------------APKVLADIVESIAAAI 173
L + F QE+N G SI PK L D+ ES+A AI
Sbjct: 1649 LSVVINRFVRI--QEEN----GHSISEEYYLIGKEECEEAEDVEVPKALGDVFESLAGAI 1702
Query: 174 YVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL---CQKNGKQVDIKHWRKN 230
Y+D L +W ++ +++ + P+ L +L K GK + R+
Sbjct: 1703 YLDSGMSLDAVWSVYYTIMKSEIEQFSTNVPKSPIRELLELEPETAKFGKPEKLADGRRV 1762
Query: 231 RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
R + V+ GSF + + IAK AA+ AL+KL +
Sbjct: 1763 RVTV-DVFGKGSFKGIGRNYR--IAKCTAAKCALKKLKR 1798
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ +ALT S+ D + +RLE IGD+ L A++ Y++ Y + G+LS LR+ +S
Sbjct: 1274 LILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNLN 1333
Query: 112 LARVA 116
L R+
Sbjct: 1334 LYRLG 1338
>gi|157167186|ref|XP_001652212.1| dicer-1 [Aedes aegypti]
gi|108877338|gb|EAT41563.1| AAEL006794-PA [Aedes aegypti]
Length = 1658
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 97/179 (54%), Gaps = 17/179 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E+I+ Y FK++ L +ALTH+SY + SYQ+LEF+GDA L +S Y+F P +
Sbjct: 1404 IESILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQNPTMS 1463
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA--------EAVSQ-- 145
PGQL+ LR+A ++ LA + V+HG + ++ +A+ D V +F E Q
Sbjct: 1464 PGQLTDLRSALVNNVTLACILVRHGLHLYILAESASFTDTVSKFVLFQEQNKHEITDQVN 1523
Query: 146 ---EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL-EPIVTLEE 200
E++ + PK L D+ ES+ AA+++D D W + G++ I+T E
Sbjct: 1524 LLVEESDRKMAEFVDVPKALGDVFESLVAAVFLDSGNDFAATWQVIYGMMGNEILTFTE 1582
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
N +N N + K +++ ALT S +D +R E +GDA L ++S Y+ + + G L+
Sbjct: 1164 NTVNVNLQQKNIIK-ALTTKSSSDVFDLERYELLGDAFLKFSISLYLVKYHKEWHEGFLT 1222
Query: 101 LLRAANISTEKLARVAVKHGF 121
++ +S L A+K+G
Sbjct: 1223 AVKGQIVSNRNLVYCAIKYGL 1243
>gi|167046036|gb|ABZ10549.1| dicer 1 [Nematostella vectensis]
Length = 412
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 22/213 (10%)
Query: 2 NPESFTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYV-----ENIINYNFKNKRLLEEA 56
+P S PRA+ + Y + +T S F V EN I Y F NK L +A
Sbjct: 201 SPMSTDGPRAS-SKYSIFTRPTITEYNSNPQVLKRFAVQLQGFENRIGYEFSNKLYLIQA 259
Query: 57 LTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLA 113
LTH+SY+ + YQRLEF+GDA L ++ ++ LDPG+L+ LR A ++ A
Sbjct: 260 LTHASYSQNRLTDCYQRLEFLGDALLDFLVTELIYSRNTNLDPGELTDLRQALVNNNIFA 319
Query: 114 RVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG-------------SIKAPK 160
+AVKHGF K + + +K+ F + V + + + I+APK
Sbjct: 320 EIAVKHGFNKSLFQMSPEWFNKIGVFVDHVKEREARGIQISKDPFLTLSNDDEEGIEAPK 379
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWMIFRGLLE 193
VL DI ES+A AI++D DL W ++ +L+
Sbjct: 380 VLGDIFESVAGAIFLDSGMDLVLTWRVYYRMLK 412
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
+ LL +ALT S D+ +RLE +GDA L A+S +++ Y D G+L+ + + +S
Sbjct: 16 DSELLLQALTTKSAGDAFDLERLEMLGDAFLKQAVSIFLYCCYKDGDEGKLTKRKTSQLS 75
Query: 109 TEKLARVAVKHGFYKFVRHS 128
L RVA + G ++++++
Sbjct: 76 NRALYRVACRLGLPEYLQNT 95
>gi|411170363|gb|AFW16070.1| dicer-1 [Nilaparvata lugens]
Length = 2239
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 125/247 (50%), Gaps = 21/247 (8%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E + Y F ++ L +A+TH+SY + YQRLEF+GDAAL ++ +++ Q
Sbjct: 1982 LERSLRYRFNDRSYLLQAMTHASYHTNRLTDCYQRLEFLGDAALDYLITRHLYEDKRQHC 2041
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF-------AEAVSQE-- 146
PG L+ LR+A ++ A +AV+HGF+K+ H + L + ++ F A+S+E
Sbjct: 2042 PGDLTDLRSALVNNTIFASLAVRHGFHKYFCHLSPGLSEVIERFVRIQEENGHAISEECY 2101
Query: 147 ---DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ ++ PK L D+ ES+A AI++D L +WM++ +++ +
Sbjct: 2102 LIGEEECEEAEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWMVYYHMMKNEIDQFSTNV 2161
Query: 204 QPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
P+ L +L K GK + R+ R N+ V+ G++ IAK AA
Sbjct: 2162 PKSPIRELLELEPETAKFGKPEKLADGRRVRVNV-EVFGKGTY--KGIGRNYRIAKCTAA 2218
Query: 261 REALEKL 267
+ AL++L
Sbjct: 2219 KCALKQL 2225
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
+L +ALT S+ D + +RLE IGD+ L A++ Y++ Y + G+LS LR+ +S
Sbjct: 1719 VLLQALTMSNANDGINLERLETIGDSFLKFAITTYLYCVYESVHEGKLSHLRSKQVSNLN 1778
Query: 112 LARVAVKHGFY 122
L R+ KH +
Sbjct: 1779 LYRLG-KHKIF 1788
>gi|57236096|gb|AAW48725.1| dicer-2 [Aedes aegypti]
Length = 1658
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 96/179 (53%), Gaps = 17/179 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E I+ Y FK++ L +ALTH+SY + SYQ+LEF+GDA L +S Y+F P +
Sbjct: 1404 IEGILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQNPTMS 1463
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA--------EAVSQ-- 145
PGQL+ LR+A ++ LA + V+HG + ++ +A+ D V +F E Q
Sbjct: 1464 PGQLTDLRSALVNNVTLACILVRHGLHLYILAESASFTDTVSKFVLFQEQHKHEITDQVN 1523
Query: 146 ---EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL-EPIVTLEE 200
E++ + PK L D+ ES+ AA+++D D W + G++ I+T E
Sbjct: 1524 LLVEESDRKMAEFVDVPKALGDVFESLVAAVFLDSGNDFAATWQVIYGMMGNEILTFTE 1582
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
N +N N + K +++ ALT S +D +R E +GDA L ++S Y+ + + G L+
Sbjct: 1164 NTVNVNLQQKNIIK-ALTTKSSSDVFDLERYELLGDAFLKFSISLYLVKYHKEWHEGFLT 1222
Query: 101 LLRAANISTEKLARVAVKHGF 121
++ +S L A+K+G
Sbjct: 1223 AVKGQIVSNRNLVYCAIKYGL 1243
>gi|392568586|gb|EIW61760.1| ribonuclease III [Trametes versicolor FP-101664 SS1]
Length = 1232
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 131/279 (46%), Gaps = 32/279 (11%)
Query: 32 MEDAVFYVENIINYNFKNKRLLEEALTHSS---YTDSTSYQRLEFIGDAALGLALSNYVF 88
++D V V+ I+ F LL +ALTH S ++ SY+RLEFIGDA L ++ ++F
Sbjct: 920 LDDTVEAVQAIVGSVFSKPELLAQALTHGSAFGSSEGASYERLEFIGDAILDFLVARHIF 979
Query: 89 LAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA-------- 140
+P L PG L+LL+ +S LA V G ++ + ++ L D ++ +
Sbjct: 980 QRHPHLSPGGLTLLKGGMVSNRALAAFCVTTGLHRHLHFASDQLADSIQRYVTSLTELRE 1039
Query: 141 ---EAVSQEDNTA---VYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194
EAV++E ++ PK L+D+VESI A+YV F + F + +P
Sbjct: 1040 KEYEAVAREQRLPGQYWLDLPLEPPKCLSDLVESILGALYVCDGFFEVGVGRFFDAVFKP 1099
Query: 195 I----VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNI----------ASVYVD 240
V L+ L P+ VTLL L + +Q + ++R+N V+V
Sbjct: 1100 FMDAHVRLQTLSTNPK-VTLLELLQAEGCRQHAVVKLPQDRQNALVHMEGEYRSCVVHVH 1158
Query: 241 GSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCE 279
G +ASA+ IA + AL+ L + + +C+
Sbjct: 1159 GQVIASATDPTAAIATRKVSLAALDALGNNPELLWRICD 1197
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 8/127 (6%)
Query: 6 FTLPRATVTDYRLLKEAMLTSLPSPEME-DAVFYVE----NIINYNFKNKRLLEEALTHS 60
FT+P V Y + L LPS + D+ V+ + +++ ++LL T +
Sbjct: 670 FTIPARHVAPYSTFRTLWL--LPSVMTKVDSCLLVKELDAKLFHHSISEQQLLIALSTRA 727
Query: 61 SYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHG 120
++T+ +Y+RLEF+GDA L + SN++++ P G L +R + I + L A++ G
Sbjct: 728 AWTE-FNYERLEFLGDAFLKVIASNFLYVTMPTAGEGTLHNVRQSIIGNKVLHECAMRVG 786
Query: 121 FYKFVRH 127
FV+H
Sbjct: 787 ICPFVQH 793
>gi|332020119|gb|EGI60563.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior]
Length = 1979
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 129/277 (46%), Gaps = 38/277 (13%)
Query: 20 KEAMLTSLPSPEME-----DAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRL 71
+ +L +P PE E D +E I Y F++ L +A TH+SY + YQRL
Sbjct: 1700 QNPLLRYIPDPESELYMMLDGYEELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRL 1759
Query: 72 EFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAA 131
EF+GDA L ++ +++ Q PG L+ LR+A ++ A +AV+ GF+K+ RH +
Sbjct: 1760 EFLGDAVLDYLITRHLYEDSRQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPG 1819
Query: 132 LDDKVKEFAEAVSQEDNTAVYGGSIK------------------APKVLADIVESIAAAI 173
L + F QE+N G SI PK L D+ ES+A AI
Sbjct: 1820 LSVVINRFVRI--QEEN----GHSISEEYYLIGEEECEEAEDVEVPKALGDVFESLAGAI 1873
Query: 174 YVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL---CQKNGKQVDIKHWRKN 230
Y+D L +W ++ +++ + P+ L +L K G+ + R+
Sbjct: 1874 YLDSGMSLDAVWSVYYTIMKSEIEQFSTNVPKSPIRELLELEPETAKFGRPEKLADGRRV 1933
Query: 231 RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
R + V+ GSF + + IAK AA+ AL+KL
Sbjct: 1934 RVTV-DVFGKGSFKGIGRNYR--IAKCTAAKCALKKL 1967
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ +ALT S+ D + +RLE IGD+ L A++ Y++ Y + G+LS LR+ +S
Sbjct: 1445 LILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNLN 1504
Query: 112 LARVA 116
L R+
Sbjct: 1505 LYRLG 1509
>gi|125586950|gb|EAZ27614.1| hypothetical protein OsJ_11558 [Oryza sativa Japonica Group]
Length = 258
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 106/205 (51%), Gaps = 11/205 (5%)
Query: 70 RLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSA 129
RLEF+GDA L + Y + YP P L+ LR+A+++ A AVK G K + HS+
Sbjct: 46 RLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSS 105
Query: 130 AALDDKVKEFAEAVSQEDNTAVYG--GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI 187
+ L K+ + E Q YG I PKVL D++ESIA AIY+D D + +W
Sbjct: 106 SELHRKMSYYLEEFGQSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRS 165
Query: 188 FRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYV-----DGS 242
+ LLEP+ T E + +P PV L + C + + I + + + ++SV + +
Sbjct: 166 MKRLLEPLATPETI--EPDPVKGLQEFCDR--RSFKITYEKNHVDGVSSVIARVKAGETT 221
Query: 243 FVASASSEQKEIAKLNAAREALEKL 267
+ A+ S K +AK A++ L+ L
Sbjct: 222 YSATKSGPCKLVAKKLASKAVLKDL 246
>gi|307190121|gb|EFN74275.1| Endoribonuclease Dcr-1 [Camponotus floridanus]
Length = 1976
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 129/277 (46%), Gaps = 38/277 (13%)
Query: 20 KEAMLTSLPSPEME-----DAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRL 71
+ +L +P PE E D +E I Y F++ L +A TH+SY + YQRL
Sbjct: 1696 QNPLLRYIPDPENELRMMLDGYDELEKSIGYKFRDSSYLLQAFTHASYQPNRLTDCYQRL 1755
Query: 72 EFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAA 131
EF+GDA L ++ +++ Q PG L+ LR+A ++ A +AV+ GF+K+ RH +
Sbjct: 1756 EFLGDAVLDYLITRHLYEDSRQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPG 1815
Query: 132 LDDKVKEFAEAVSQEDNTAVYGGSIK------------------APKVLADIVESIAAAI 173
L + F QE+N G SI PK L D+ ES+A AI
Sbjct: 1816 LSVVINRFVRI--QEEN----GHSISEEYYLIGEEECEEAEDVEVPKALGDVFESLAGAI 1869
Query: 174 YVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL---CQKNGKQVDIKHWRKN 230
Y+D L +W ++ +++ + P+ L +L K G+ + R+
Sbjct: 1870 YLDSGMSLDAVWSVYYTIMKSEIEQFSTNVPKSPIRELLELEPETAKFGRPEKLADGRRV 1929
Query: 231 RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
R + V+ GSF + + IAK AA+ AL+KL
Sbjct: 1930 RVTV-DVFGKGSFKGIGRNYR--IAKCTAAKCALKKL 1963
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ +ALT S+ D + +RLE IGD+ L A++ Y++ Y + G+LS LR+ +S
Sbjct: 1441 LILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNLN 1500
Query: 112 LARVA 116
L R+
Sbjct: 1501 LYRLG 1505
>gi|371486410|gb|AEX31250.1| Dicer 2 [Aedes albopictus]
Length = 1659
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 102/200 (51%), Gaps = 26/200 (13%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E+I+ Y FK++ L +ALTH+SY + SYQ+LEF+GDA L +S Y+F P +
Sbjct: 1405 IESILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQNPTMS 1464
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ---------- 145
PGQL+ LR+A ++ LA + V+HG + ++ +A+ D V +F Q
Sbjct: 1465 PGQLTDLRSALVNNITLACLLVRHGLHLYILAESASFSDTVNKFVMFQEQNKHEITDQVN 1524
Query: 146 ---EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL---------- 192
E++ + PK L D+ ES+ AA+++D D W + G++
Sbjct: 1525 LLVEESDRKMAEFVDVPKALGDVFESLVAAVFLDSGNDFAVTWRVIYGMMGNEIMTFTEN 1584
Query: 193 EPIVTLEELQQQPQPVTLLF 212
PI + +L + P + +F
Sbjct: 1585 TPIQIVRQLYEFKPPCSPIF 1604
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
N IN N + K +L+ A+T S D +R E +GDA L A S Y+ + + G L+
Sbjct: 1165 NTINVNLQQKDILK-AITTKSAADVFDLERYELLGDAFLKFATSLYLIKYHKEWHEGFLT 1223
Query: 101 LLRAANISTEKLARVAVKHGF 121
++ +S L A+K+G
Sbjct: 1224 AVKGQIVSNRNLVYCAIKYGL 1244
>gi|371486404|gb|AEX31247.1| Dicer 2 isoform A [Aedes albopictus]
gi|371486406|gb|AEX31248.1| Dicer 2 isoform B [Aedes albopictus]
Length = 1659
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 102/200 (51%), Gaps = 26/200 (13%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E+I+ Y FK++ L +ALTH+SY + SYQ+LEF+GDA L +S Y+F P +
Sbjct: 1405 IESILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQNPTMS 1464
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ---------- 145
PGQL+ LR+A ++ LA + V+HG + ++ +A+ D V +F Q
Sbjct: 1465 PGQLTDLRSALVNNITLACLLVRHGLHLYILAESASFSDTVNKFVMFQEQNKHEITDQVN 1524
Query: 146 ---EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL---------- 192
E++ + PK L D+ ES+ AA+++D D W + G++
Sbjct: 1525 LLVEESDRKMAEFVDVPKALGDVFESLVAAVFLDSGNDFAVTWRVIYGMMGNEIMTFTEN 1584
Query: 193 EPIVTLEELQQQPQPVTLLF 212
PI + +L + P + +F
Sbjct: 1585 TPIQIVRQLYEFKPPCSPIF 1604
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
N IN N + K +L+ A+T S D +R E +GDA L A S Y+ + + G L+
Sbjct: 1165 NTINVNLQQKDILK-AITTKSAADVFDLERYELLGDAFLKFATSLYLIKYHKEWHEGFLT 1223
Query: 101 LLRAANISTEKLARVAVKHGF 121
++ +S L A+K+G
Sbjct: 1224 AVKGQIVSNRNLVYCAIKYGL 1244
>gi|371486408|gb|AEX31249.1| Dicer 2 [Aedes albopictus]
Length = 1625
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 102/200 (51%), Gaps = 26/200 (13%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E+I+ Y FK++ L +ALTH+SY + SYQ+LEF+GDA L +S Y+F P +
Sbjct: 1371 IESILGYKFKDRTYLLQALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQNPTMS 1430
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ---------- 145
PGQL+ LR+A ++ LA + V+HG + ++ +A+ D V +F Q
Sbjct: 1431 PGQLTDLRSALVNNITLACLLVRHGLHLYILAESASFSDTVNKFVMFQEQNKHEITDQVN 1490
Query: 146 ---EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL---------- 192
E++ + PK L D+ ES+ AA+++D D W + G++
Sbjct: 1491 LLVEESDRKMAEFVDVPKALGDVFESLVAAVFLDSGNDFAVTWRVIYGIMGNEIMTFTEN 1550
Query: 193 EPIVTLEELQQQPQPVTLLF 212
PI + +L + P + +F
Sbjct: 1551 TPIQIVRQLYEFKPPCSPIF 1570
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
N IN N + K +L+ A+T S D +R E +GDA L A S Y+ + + G L+
Sbjct: 1131 NTINVNLQQKDILK-AITTKSAADVFDLERYELLGDAFLKFATSLYLIKYHKEWHEGFLT 1189
Query: 101 LLRAANISTEKLARVAVKHGF 121
++ +S L A+K+G
Sbjct: 1190 AVKGQIVSNRNLVYCAIKYGL 1210
>gi|383862048|ref|XP_003706496.1| PREDICTED: endoribonuclease Dcr-1-like [Megachile rotundata]
Length = 1952
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 130/273 (47%), Gaps = 26/273 (9%)
Query: 20 KEAMLTSLPSPEME-----DAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRL 71
+ +L +P+PE E D +E I Y F + L +A TH+SY + YQRL
Sbjct: 1674 QNPLLRYIPNPEQELLMMLDGYEELEKNIGYKFNDISYLLQAFTHASYQPNKLTDCYQRL 1733
Query: 72 EFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAA 131
EF+GDA L ++ +++ Q PG L+ LR+A ++ A +AV+ GF+K+ RH +
Sbjct: 1734 EFLGDAVLDYLITRHLYEDARQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPG 1793
Query: 132 LDDKVKEF-------AEAVSQE-----DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDF 179
L + F ++S+E + ++ PK L D+ ES+A AIY+D
Sbjct: 1794 LSVVINRFVRIQEENGHSISEEYYLIGEEKCEEAEDVEVPKALGDVFESLAGAIYLDSGM 1853
Query: 180 DLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIAS 236
L +W ++ +++ + P+ L +L K GK + + R +
Sbjct: 1854 SLDAVWSVYYVIMKNEIEQFSTNVPKSPIRELLELEPETAKFGKPEKLADGHRVRVTV-D 1912
Query: 237 VYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
V+ GSF + + IAK AA+ AL+KL Q
Sbjct: 1913 VFGKGSFKGIGRNYR--IAKCTAAKCALKKLKQ 1943
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ +ALT S+ D + +RLE IGD+ L A++ Y++ Y + G+LS LR+ +S
Sbjct: 1419 LILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNLN 1478
Query: 112 LARVA 116
L R+
Sbjct: 1479 LYRLG 1483
>gi|242033789|ref|XP_002464289.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor]
gi|241918143|gb|EER91287.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor]
Length = 462
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 100/182 (54%), Gaps = 8/182 (4%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAY-PQL 94
++ II Y F + LL EALTHSSY +T +RLEF+GDA L L++Y + Y P+
Sbjct: 222 LQTIIGYVFDDSSLLIEALTHSSYNTAGITTCNERLEFLGDAVLDYILTDYFYRKYYPKC 281
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
P L+ LR A+++ A AVK G +K + HS++ +K+ + + +
Sbjct: 282 TPALLTNLRKASVNNWCYAHAAVKAGLHKHILHSSS--KQMIKDLESSGPFSGPSHGWEP 339
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL 214
I P+ LAD+ E+IA AIYVD D + +W R LL P+ T E + PV+ L +L
Sbjct: 340 GIGLPEDLADLFEAIAGAIYVDSGNDKEAVWRAMRRLLVPLATPETILL--DPVSELKEL 397
Query: 215 CQ 216
C+
Sbjct: 398 CE 399
>gi|452003006|gb|EMD95463.1| hypothetical protein COCHEDRAFT_1026333 [Cochliobolus heterostrophus
C5]
Length = 1592
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 142/302 (47%), Gaps = 29/302 (9%)
Query: 25 TSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAALG 80
T+ S M D +E Y+FK RLL A H SY + +YQRLEF GDA L
Sbjct: 1286 TAEASAAMLDMARKIEMKHPYHFKYPRLLRSAFAHPSYPYMYENIPNYQRLEFAGDALLD 1345
Query: 81 LALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA 140
+A +++ YP DP L+ + +S + L V VK G++ +++ + A L ++++++
Sbjct: 1346 MAFITHLYFKYPDKDPHWLTEHKTPMVSNKFLGAVCVKLGWHVYIKQNTATLTNQIRDYV 1405
Query: 141 ----EAVSQEDNTAVYGGSI-KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195
EA + Y +I + PK LAD++E+ A+I+VD +FD + F L+P
Sbjct: 1406 LEAEEAEREAGGAVDYWVTISEPPKCLADVIEAYVASIFVDAEFDFGVVQTFFEMHLKPF 1465
Query: 196 ---VTLEELQQ--QPQPVTLLFKLCQKNGKQVDIKHWR------------KNRKNIASVY 238
+TL+ ++ P T L +L N +D WR K + A V
Sbjct: 1466 FLDMTLDSYEKFASNHPTTRLSRLLTINFGCID---WRMGALETETVIPGKGKAIAAMVL 1522
Query: 239 VDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLH 298
+ G + + A++ A++ ALEKL P D +DE+ E E ++ K
Sbjct: 1523 IHGKVHFYSLGQSGRYARVRASQAALEKLEGLPPFQFRNAYGCDCVDEEAEGEGSQAKQE 1582
Query: 299 EL 300
++
Sbjct: 1583 QM 1584
>gi|240247227|emb|CAX68236.1| dicer-1 [Blattella germanica]
Length = 2271
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 130/269 (48%), Gaps = 30/269 (11%)
Query: 20 KEAMLTSLPSPEME-----DAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRL 71
+ +L S+ +PE E D E I Y F+++ L ++LTH+SY+ + YQRL
Sbjct: 1994 RSPLLRSVSNPEAELRRLLDGYDVFERRIRYKFRDRSYLLQSLTHASYSPNRLTDCYQRL 2053
Query: 72 EFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAA 131
EF+GDA L ++ +++ Q PG L+ LR+A ++ A +AV++GF+K+ RH +
Sbjct: 2054 EFLGDAVLDYLITRHLYEDSRQHSPGALTDLRSALVNNTIFASLAVRYGFHKYFRHLSPG 2113
Query: 132 LDDKVKEFAEAVSQEDNTAVYG--------------GSIKAPKVLADIVESIAAAIYVDI 177
L++ V F QE+N ++ PK L D+ ES+A AI++D
Sbjct: 2114 LNEVVDRFVRI--QEENGHTISEEYYLIEEEECEEAEDVEVPKALGDVFESVAGAIFLDS 2171
Query: 178 DFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNI 234
L +W ++ +++ + P+ L +L K GK + R+ R +
Sbjct: 2172 GMSLDAVWRVYYRMMKSEIEQFSTNVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTV 2231
Query: 235 ASVYVDGSFVASASSEQKEIAKLNAAREA 263
V+ G+F + + IAK AA+ A
Sbjct: 2232 -EVFGKGTFKGIGRNYR--IAKCTAAKCA 2257
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
+ALT S+ D + +RLE IGD+ L A++ Y++ Y + G+LS LR+ +S L R
Sbjct: 1731 QALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNLNLYR 1790
Query: 115 VAVKHGF 121
+ + F
Sbjct: 1791 LGRRKVF 1797
>gi|388330447|gb|AFK29469.1| Dicer1 [Locusta migratoria]
Length = 2324
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 125/263 (47%), Gaps = 24/263 (9%)
Query: 23 MLTSLPSPEME-----DAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFI 74
+L ++ +PE + D E I Y F+++ L ++LTH+SY+ + YQRLEF+
Sbjct: 2050 LLRNVSNPERKLEALLDGFDVFEQKIQYKFRDRSYLLQSLTHASYSPNRLTDCYQRLEFL 2109
Query: 75 GDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDD 134
GDA L ++ +++ Q PG L+ LR+A ++ A +AV++GF+KF RH + L++
Sbjct: 2110 GDAVLDYLITRHLYEDSRQHSPGALTDLRSALVNNTIFASLAVRYGFHKFFRHLSPGLNE 2169
Query: 135 KVKEFAEAVSQEDNTAVYG--------------GSIKAPKVLADIVESIAAAIYVDIDFD 180
V F QE+N ++ PK L D+ ES+A AI++D +
Sbjct: 2170 VVDRFVRI--QEENGHTISEEYYLIEEEECEEAEDVEVPKALGDVFESVAGAIFLDSNMS 2227
Query: 181 LQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVD 240
L +W ++ +++ + P+ L +L + K + R+ SV V
Sbjct: 2228 LDAVWRVYYRMMKLEIEQFSTNVPKSPIRELLELEPETAKFGKPEKLADGRRVRVSVEVF 2287
Query: 241 GSFVASASSEQKEIAKLNAAREA 263
G + IAK AA+ A
Sbjct: 2288 GKGIFKGIGRNYRIAKCTAAKCA 2310
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
++ +ALT S+ D + +RLE IGD+ L A++ Y++ Y + G+LS LR+ +S
Sbjct: 1785 IILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNLN 1844
Query: 112 LARVAVKHGF 121
L R+ + F
Sbjct: 1845 LYRLGRRKVF 1854
>gi|302826423|ref|XP_002994689.1| hypothetical protein SELMODRAFT_432592 [Selaginella moellendorffii]
gi|300137140|gb|EFJ04244.1| hypothetical protein SELMODRAFT_432592 [Selaginella moellendorffii]
Length = 243
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 128/245 (52%), Gaps = 27/245 (11%)
Query: 136 VKEFAEAVSQE-DNTAV--YG-GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGL 191
+K+F + + E D + +G G KAPKVL DI+ESIA AI++D ++W +F L
Sbjct: 1 IKDFVKDIQSELDKPGINSFGIGDFKAPKVLGDILESIAGAIFLDTGLAADEVWKVFERL 60
Query: 192 LEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQ 251
LEP+VT + L PV L + CQ+ + ++ + R+ V+VDG + A + Q
Sbjct: 61 LEPMVTPDTLPV--HPVRELQERCQQQAEGLEYRASREGSIATVEVFVDGVQIGCAQNTQ 118
Query: 252 KEIAK---------LNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCG 302
K++A+ R++LE+ + V ++ +D F +Q L+++C
Sbjct: 119 KKMAQKLAARNALAALKERDSLEEESNK------VTKMENDKANAF----TRQTLNDICL 168
Query: 303 KKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLF--ITGDEKSRVKDAENSAASMML 360
+++WP P Y++ + GP+H K+F V++ T + G +K A++SAA ++L
Sbjct: 169 QRQWPMPQYRLLSESGPAHAKRFTYTVRVNTRERGWTDECEGQAMPSMKKAKDSAALVLL 228
Query: 361 RALRE 365
L++
Sbjct: 229 EVLKQ 233
>gi|346970337|gb|EGY13789.1| RNase3 domain-containing protein [Verticillium dahliae VdLs.17]
Length = 1563
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 128/278 (46%), Gaps = 41/278 (14%)
Query: 28 PSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS----TSYQRLEFIGDAALGLAL 83
PS +A ++ + Y FK+ LL A H SY +YQRLEF+GDA L +
Sbjct: 1264 PSAVQMEASLQIKEQMGYEFKSPALLRSAFKHPSYPRQFESVPNYQRLEFLGDALLDMVC 1323
Query: 84 SNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF---- 139
+++F +P DP L+ + A +S L ++V+ GFY+ V H + + +++K++
Sbjct: 1324 VDFLFRKFPDADPQWLTEHKMAMVSNHFLGSLSVELGFYRRVLHFNSIMANQIKDYVDAL 1383
Query: 140 ------AEAVSQEDNTAV--YGGSIK-APKVLADIVESIAAAIYVDIDFDLQKLWMIFRG 190
AEAV+Q T Y ++K PK L+D+VE+ AI+VD +D ++ F
Sbjct: 1384 THARQEAEAVAQISGTVSRDYWLNVKHPPKFLSDVVEAYIGAIFVDSGYDYGQVQAFFEK 1443
Query: 191 LLEPI---VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWR------------------K 229
+ P + L + PVT L ++ Q++ + WR
Sbjct: 1444 HIRPFFADMALYDSFASSHPVTTLARMMQQD---FGCQDWRLLVSELPPSCEDGGAAAIT 1500
Query: 230 NRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+ I V G + A S AK+ AA+ A+EKL
Sbjct: 1501 ETEVICGFMVHGRILLHAKSSSGRYAKVGAAKRAVEKL 1538
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 65 STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKF 124
+Y+RLEF+GD L +A + +F P + + + R I + L VA+K ++
Sbjct: 1109 GNNYERLEFLGDCFLKMATTIALFTRIPDSNEFECHVERMLLICNQNLFNVALKKNLQEY 1168
Query: 125 VRHSAAALDDKVKEFAEAVSQEDNTA--VYGGSIKAPKVLADIVESIAAAIYV 175
+R D+ + + + Q+ A A K +AD+ E+I A Y+
Sbjct: 1169 IRSKQF---DRRSWYPQGLKQKAGKAQGAQNSHSLADKSIADVCEAIIGASYL 1218
>gi|384500232|gb|EIE90723.1| hypothetical protein RO3G_15434 [Rhizopus delemar RA 99-880]
Length = 1239
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 104/207 (50%), Gaps = 25/207 (12%)
Query: 9 PRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS- 67
PRA V R+L LP ++ +++ F L+ EALTH+S +STS
Sbjct: 943 PRAEVKALRML------DLPK---------IQVLVDREFNKPLLVVEALTHASLPNSTSP 987
Query: 68 -YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
YQRLEF+GDA L + Y++ YP +PGQ++ L+ + ++ L + + +G +K +
Sbjct: 988 CYQRLEFLGDAILDFLVIRYLYTKYPDAEPGQITTLKDSCVNNHVLGIICLNNGLHKHII 1047
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAV----YGGSIKAPKVLADIVESIAAAIYVDIDFDLQ 182
H + L + E V + +T Y + PKVL+D+VES+ A++VD FDL
Sbjct: 1048 HYSGKLVRAINTLEEEVQELKDTGKAVGEYWADMNIPKVLSDVVESMLGAVFVDAKFDLS 1107
Query: 183 KLWMIFRGLLEPI----VTLEELQQQP 205
+F PI VT E ++ P
Sbjct: 1108 PCAALFDKWFVPIFDANVTPELVRIHP 1134
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EA T S + Y+RLE +GD+ L + +++ +P + G+L LR + L R
Sbjct: 782 EAYTMPSASMEMDYERLETLGDSLLKFIATIRLYINFPFSNEGELHHLRIRVVCNRALYR 841
Query: 115 VAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK---APKVLADIVESIAA 171
A + FY++V ++ A + + S DN K + K LADIVE+
Sbjct: 842 AAKRLKFYRYV--TSQAFNRRHWRPPHFTSTADNADTMESLKKHKLSDKTLADIVEASLG 899
Query: 172 AIYV 175
A Y+
Sbjct: 900 AAYL 903
>gi|393215463|gb|EJD00954.1| ribonuclease III [Fomitiporia mediterranea MF3/22]
Length = 1411
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 108/217 (49%), Gaps = 25/217 (11%)
Query: 28 PSPEME-----DAVFYVENIINYNFKNKRLLEEALTHSSY--TDSTSYQRLEFIGDAALG 80
P PE+ ++ VE II + F + LL +ALTH+S + TSY+RLEFIGDA L
Sbjct: 1101 PPPEVTARLRTGSIQAVEAIIGHQFNHPHLLAQALTHASIHGNEMTSYERLEFIGDAILD 1160
Query: 81 LALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA 140
+ +++ L PG L+LL+ A +S LA V V G ++ + ++AL+ ++ +A
Sbjct: 1161 FLVIRHIYDRDSSLSPGALTLLKGAMVSNAALAAVCVWSGLHEHLLFESSALEKSIQSYA 1220
Query: 141 ------------EAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIF 188
+A ++ Y ++ PK L+D+VESI A+YV +F F
Sbjct: 1221 VELEQRQLAEHEQAAREDRQPGQYWVDVEPPKALSDVVESIFGAVYVSDNFSPIGAEKFF 1280
Query: 189 RGLLEPI----VTLEELQQQPQPVTLLFKLCQKNGKQ 221
+L P +TL L P +LF+L Q G Q
Sbjct: 1281 DKVLAPFYDQHITLHTLSH--HPTKILFELFQSQGCQ 1315
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQ 93
+A ++ +I Y+ LL + +++ D Y+RLE +GDA L S Y+F+ +P
Sbjct: 839 NAKYFDHSIAEYD-----LLAAVSSPAAFVD-VDYERLELLGDAYLKYLSSVYLFVTFPT 892
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
L G L + R IS L R A + G ++++
Sbjct: 893 LHEGALHVSRQRIISNRSLLRNANRCGLPQYIQ 925
>gi|396465578|ref|XP_003837397.1| similar to dicer-like protein 1 [Leptosphaeria maculans JN3]
gi|312213955|emb|CBX93957.1| similar to dicer-like protein 1 [Leptosphaeria maculans JN3]
Length = 1588
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 128/263 (48%), Gaps = 23/263 (8%)
Query: 28 PSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAALGLAL 83
P+ M DA +E + Y+FK RL+ A TH SY +YQRLEF+GD+ L +A
Sbjct: 1274 PTAAMLDAARQIEAVHPYHFKYPRLVRSAFTHPSYAYMFEHIPNYQRLEFLGDSLLDMAF 1333
Query: 84 SNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA--- 140
+++ YP DP L+ + +S + L V VK G+++ ++ + A L +++++
Sbjct: 1334 IMHLYYKYPDKDPQWLTEHKTPMVSNKFLGAVCVKLGWHRHLKSNTAILSTQIRDYVLEI 1393
Query: 141 EAVSQEDNTAV--YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI--- 195
+ +E N AV + + PK LAD++E+ AA++VD FD + F L+P
Sbjct: 1394 DEAEREANGAVDYWVNVHEPPKCLADVIEAYVAALFVDSQFDFSVVQSFFDRHLKPFFAD 1453
Query: 196 VTLEELQQ--QPQPVTLLFKL------C---QKNGKQVDIKHWRKNRKNIASVYVDGSFV 244
+TL+ + P T L +L C + ++ D K + A V + G
Sbjct: 1454 MTLDAYENFASNHPTTRLSRLLSISFGCSDWRMGARETDTVIPGKGKAIAAMVMIHGKVW 1513
Query: 245 ASASSEQKEIAKLNAAREALEKL 267
+ + A+L A+ ALE+L
Sbjct: 1514 FHSLGQGGRYARLRASHAALERL 1536
>gi|296424770|ref|XP_002841919.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638171|emb|CAZ86110.1| unnamed protein product [Tuber melanosporum]
Length = 1402
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 88/161 (54%), Gaps = 9/161 (5%)
Query: 28 PSPEMEDAVFYVENIINYNFKNKRLLEEALTHSS----YTDSTSYQRLEFIGDAALGLAL 83
PSP +E ++ Y FK+ RLL ALTH S + SYQRLEF+GDA L L
Sbjct: 1113 PSPSHIRVAEDIEELVGYKFKHPRLLISALTHPSLPFTWDRVPSYQRLEFLGDAVLDLVC 1172
Query: 84 SNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF---- 139
Y+F YP DP L+ + A +S + L VAV+ GF++ +R + LD ++E+
Sbjct: 1173 VRYMFQKYPHADPQWLTEHKMAMVSNKFLGMVAVEMGFHRKLRRMGSVLDHAIREYEVDI 1232
Query: 140 AEAVSQEDNTAVYGGSIKA-PKVLADIVESIAAAIYVDIDF 179
+A + + + S+KA PK L D++E+ A++VD F
Sbjct: 1233 QDAKANSNGAVDFWTSLKAPPKALPDVLEAFIGAVFVDSGF 1273
>gi|340727238|ref|XP_003401955.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dcr-1-like [Bombus
terrestris]
Length = 1957
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 127/276 (46%), Gaps = 38/276 (13%)
Query: 20 KEAMLTSLPSPEME-----DAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRL 71
+ +L +P PE E D +E I Y F + L +A TH+SY + YQRL
Sbjct: 1681 QNPLLRYIPDPEQELKMMLDGYEELEKSIGYEFHDISYLLQAFTHASYQPNRLTDCYQRL 1740
Query: 72 EFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAA 131
EF+GDA L ++ +++ Q PG L+ LR+A ++ A +AV+ GF+K+ RH +
Sbjct: 1741 EFLGDAVLDYLITRHLYEDARQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPG 1800
Query: 132 LDDKVKEFAEAVSQEDNTAVYGGSIK------------------APKVLADIVESIAAAI 173
L + F QE+N G SI PK L D+ ES+A AI
Sbjct: 1801 LSIVINRFVRI--QEEN----GHSISEEYYLIGEEECEEAEDVEVPKALGDVFESLAGAI 1854
Query: 174 YVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL---CQKNGKQVDIKHWRKN 230
Y+D L +W ++ +++ + P+ L +L K GK + R+
Sbjct: 1855 YLDSGMSLDAVWSVYYAIMKNEIEQFSTNVPKSPIRELLELEPETAKFGKPEKLADGRRV 1914
Query: 231 RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEK 266
R + V+ GSF + + IAK AA+ AL+K
Sbjct: 1915 RVTV-DVFGKGSFKGIGRNYR--IAKCTAAKCALKK 1947
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ +ALT S+ D + +RLE IGD L A++ Y++ Y + G+LS LR+ +S
Sbjct: 1426 LILQALTMSNANDGINLERLETIGDXFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNLN 1485
Query: 112 LARVA 116
L R+
Sbjct: 1486 LYRLG 1490
>gi|156553056|ref|XP_001605287.1| PREDICTED: endoribonuclease Dcr-1 [Nasonia vitripennis]
Length = 1917
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 124/263 (47%), Gaps = 42/263 (15%)
Query: 16 YRLLKEA---MLTSLPSPEME-----DAVFYVENIINYNFKNKRLLEEALTHSSYTD--- 64
Y+ L+E + ++P PE+E D +E I Y F+N+ L +A TH+SY
Sbjct: 1629 YKKLQEPPSPLFYNVPQPEIELEIMLDGYDSLERSIGYTFRNRSYLLQAFTHASYQPNRL 1688
Query: 65 STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKF 124
+ YQRLEF+GDA L ++ +++ Q PG L+ LR+A ++ A +AV+ GF+K+
Sbjct: 1689 TDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRCGFHKY 1748
Query: 125 VRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK---------------------APKVLA 163
RH + L+ + F QE+N G SI PK L
Sbjct: 1749 FRHLSPGLNTVIDRFVRI--QEEN----GHSISEEYYLIGEREFEEAEEAEDVEVPKALG 1802
Query: 164 DIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL---CQKNGK 220
D+ ES+A AIY+D + L +W ++ +++ + P+ L +L K GK
Sbjct: 1803 DVFESLAGAIYLDSNMSLDAVWAVYFEIMKSEIEQFSANVPKSPIRELLELEPETAKFGK 1862
Query: 221 QVDIKHWRKNRKNIASVYVDGSF 243
+ R+ R + V+ GSF
Sbjct: 1863 PEKLADGRRVRVTV-DVFGKGSF 1884
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ +ALT S+ D + +RLE IGD+ L A++ Y+F Y + G+LS LR+ +S
Sbjct: 1378 LILQALTMSNANDGINLERLETIGDSFLKYAITTYLFCTYNNIHEGKLSHLRSKQVSNLN 1437
Query: 112 LARVA 116
L R+
Sbjct: 1438 LYRLG 1442
>gi|299747526|ref|XP_001837094.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130]
gi|298407559|gb|EAU84711.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130]
Length = 1499
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 119/252 (47%), Gaps = 23/252 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST--SYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
VE II + F+ LL + LTH+S S +Y+RLEFIGDA L + ++F L P
Sbjct: 1213 VEGIIGHRFQQPHLLAQILTHTSVHGSKVLTYERLEFIGDAILDFMVIRHIFDRERTLSP 1272
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN-------- 148
G L++L+ A ++ LA V + G YK + + L ++++AEA+++ +
Sbjct: 1273 GGLTMLKGAMVANSTLATVCILSGIYKHLVFGSYQLSSAIEDYAEAINERADKEYALAEQ 1332
Query: 149 ----TAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI----VTLEE 200
+ I+ PK L+D++ESI A+Y+ +F F +L P ++L
Sbjct: 1333 ENRMPGQFWPDIEPPKALSDVIESIIGALYISDNFCPVGTEAFFDKVLRPFFDKHISLRT 1392
Query: 201 LQQQPQPVTLLFKLCQKNGKQ---VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKL 257
L P LF+ Q +G Q + +K K + V + ASAS +A
Sbjct: 1393 LTH--HPTKTLFEYIQAHGCQQLKLSKGPQQKGGKMSCEILVHETVCASASDVSLSVAAR 1450
Query: 258 NAAREALEKLAQ 269
A+ AL++ +
Sbjct: 1451 EASTRALDRFKE 1462
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFL 89
D +F V+ + N F + + EE L ++ T S +Y+RLE +GDA L S VF+
Sbjct: 952 DHLFVVKEL-NMQFFDNAIDEELLYMATTTVSAEMEHNYERLELLGDAFLKYLASVVVFV 1010
Query: 90 AYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFV 125
P + G L + R IS + L A + G ++
Sbjct: 1011 MNPTQNEGSLHVARQRLISNKALLACATQVGLPAYI 1046
>gi|149636857|ref|XP_001510982.1| PREDICTED: endoribonuclease Dicer-like [Ornithorhynchus anatinus]
Length = 1921
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INYNFKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1669 ERKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1728
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1729 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1788
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1789 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1848
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1849 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1907
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1908 LRSLKANQP 1916
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1294 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1353
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1354 NCNLYRLGKKKGL 1366
>gi|395504573|ref|XP_003756622.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer [Sarcophilus
harrisii]
Length = 1924
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INYNFKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1672 EKKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1731
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1732 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1791
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1792 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1851
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1852 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1910
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1911 LRSLKANQP 1919
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1297 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1356
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1357 NCNLYRLGKKKGL 1369
>gi|443925066|gb|ELU43989.1| type III restriction enzyme [Rhizoctonia solani AG-1 IA]
Length = 1442
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 134/276 (48%), Gaps = 14/276 (5%)
Query: 4 ESFTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSY- 62
E+ LP T + L +E + + S E+ VE + Y FKN L+ EA TH++Y
Sbjct: 1138 EALGLPLGGTTPWHLRREVDVFARKS-EITMLFAPVEEKLGYKFKNASLVAEAFTHTAYD 1196
Query: 63 -TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGF 121
+ SY RLEF+GD+ L + +++L +P++ PGQ+S R+ ++ ++AV
Sbjct: 1197 LSQGPSYNRLEFLGDSLFDLYVVKFMYLKFPKMTPGQMSWARSRLVNASTFGKLAVGLEL 1256
Query: 122 YKFVRHSAAALDDKVKEFA---EAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDID 178
+K + S+A L V FA E +S E+ + I APK ++D+ E+I AIYVD
Sbjct: 1257 HKHILTSSANLQKAVASFAQEVEEISLEEILQIC-WKIDAPKAISDVFEAIFGAIYVDSS 1315
Query: 179 FDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL-----CQKNGKQV--DIKHWRKNR 231
F+L+ + ++ I+ Q P + L + C+ G + + R +
Sbjct: 1316 FNLELTFEHIHRVMANIMEYVTPVMQGDPTSELVRWVASQGCEAQGSTIFSSSSNSRAST 1375
Query: 232 KNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+ V G ++ ++ ++A+ AA +AL L
Sbjct: 1376 NDTVETTVHGRTISRVTAATSKLARPMAAEQALNIL 1411
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 68 YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFV 125
YQRLE IGD+ L +++ ++F+ Y GQLS ++ + +S L RV + +F+
Sbjct: 995 YQRLETIGDSVLKVSMCTHLFIKYQGHHEGQLSAMKDSVVSNANLMRVGRQSPLSRFL 1052
>gi|126290301|ref|XP_001367933.1| PREDICTED: endoribonuclease Dicer-like [Monodelphis domestica]
Length = 1923
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INYNFKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1671 EKKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1730
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1731 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1790
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1791 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1850
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1851 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1909
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1910 LRSLKANQP 1918
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1296 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1355
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1356 NCNLYRLGKKKGL 1368
>gi|392593064|gb|EIW82390.1| ribonuclease III [Coniophora puteana RWD-64-598 SS2]
Length = 1217
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 143/302 (47%), Gaps = 34/302 (11%)
Query: 4 ESFTLPRATVTDYRLLKEAMLTSLPSPEMEDAVF-----YVENIINYNFKNKRLLEEALT 58
++ T+P +V + +LT P P + A+ +VE ++ K LL +ALT
Sbjct: 895 KALTIPLNSVEQWSDFGRKVLT--PPPRVSAALPPRSLEFVEKLVRRKVKYPHLLAQALT 952
Query: 59 HSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVA 116
H S D+T+YQRLEF+GDA L + +++ L PG +++L++A ++ LA +
Sbjct: 953 HGSIQGYDATTYQRLEFLGDAILDFMVVRHIYHRDESLSPGVMTILKSAMVANSALAAIC 1012
Query: 117 VKHGFYKFVRHSAAALDDKVKEFA----------EAVSQEDNTAV--YGGSIKAPKVLAD 164
V G + + + + K++A S D T + + I PK L+D
Sbjct: 1013 VWSGLNEHLLVDDYEVSESFKKYARDLKAKEQEVRTASLRDGTPIGQFWLHITPPKALSD 1072
Query: 165 IVESIAAAIYVDIDFDLQKLWMIFRGLLEPI----VTLEELQQQPQPVTLLFKLCQKNGK 220
+VESI A+Y+ F+ + + F +L P +TL+ + + P +LF L Q +G
Sbjct: 1073 VVESIIGALYISDGFEPLSIEIFFDEVLMPFYDQYITLKTITE--HPAKILFDLLQAHGC 1130
Query: 221 Q---VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL---AQSMPVN 274
Q +D K + V V G+ VA A+S+ + A+ A E L+ L + M
Sbjct: 1131 QEYELD-KGKGDGQFKFCKVVVHGTLVAEATSDTQSAARRLACMETLDALEGDPEFMVRT 1189
Query: 275 CD 276
CD
Sbjct: 1190 CD 1191
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
LL AL+ S + Y+RLE +GDA L S YVF+ YP G L LR S +
Sbjct: 722 LLLSALSAPSALYAFDYERLELLGDAFLKYITSIYVFVIYPAHAEGSLHNLRQKMTSNKA 781
Query: 112 LARVAV 117
L + A+
Sbjct: 782 LLQNAL 787
>gi|270015102|gb|EFA11550.1| dicer-1 [Tribolium castaneum]
Length = 1835
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 121/241 (50%), Gaps = 13/241 (5%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E I Y F+++ L +ALTH+S++ +T YQRLEF+GDA L ++ +++ P
Sbjct: 1583 ERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTRMHSP 1642
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV----- 151
G L+ LR+A ++ A +AV++GF+++ R+ + +L++ V++F +T V
Sbjct: 1643 GALTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQEDSGHTLVDELYL 1702
Query: 152 -----YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQ 206
++ PK L D+ ES+A AI++D L +W ++ +++ + +
Sbjct: 1703 VVETEEVEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWKVYYNMMKSEIEQFSNKVPKS 1762
Query: 207 PVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEK 266
P+ L +L + K + R+ +V V G V IAK AA+ AL+
Sbjct: 1763 PIRELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGVFKGIGRNYRIAKCTAAKCALKN 1822
Query: 267 L 267
L
Sbjct: 1823 L 1823
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
N++ + + +L +ALT S+ D + +RLE IGD+ L A++NY++ Y + G+LS
Sbjct: 1343 NLVEHPGPSPNVLLQALTMSNANDGINLERLETIGDSFLKYAITNYLYSKYENVHEGKLS 1402
Query: 101 LLRAANISTEKLARVAVKHGFYKFV 125
LR+ +S L R+ + G +++
Sbjct: 1403 HLRSKQVSNLNLYRLGRRKGLGEYM 1427
>gi|189234048|ref|XP_968993.2| PREDICTED: Dicer-1 [Tribolium castaneum]
Length = 1865
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 121/241 (50%), Gaps = 13/241 (5%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E I Y F+++ L +ALTH+S++ +T YQRLEF+GDA L ++ +++ P
Sbjct: 1613 ERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYEDTRMHSP 1672
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV----- 151
G L+ LR+A ++ A +AV++GF+++ R+ + +L++ V++F +T V
Sbjct: 1673 GALTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQEDSGHTLVDELYL 1732
Query: 152 -----YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQ 206
++ PK L D+ ES+A AI++D L +W ++ +++ + +
Sbjct: 1733 VVETEEVEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWKVYYNMMKSEIEQFSNKVPKS 1792
Query: 207 PVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEK 266
P+ L +L + K + R+ +V V G V IAK AA+ AL+
Sbjct: 1793 PIRELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGVFKGIGRNYRIAKCTAAKCALKN 1852
Query: 267 L 267
L
Sbjct: 1853 L 1853
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 50/85 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
N++ + + +L +ALT S+ D + +RLE IGD+ L A++NY++ Y + G+LS
Sbjct: 1373 NLVEHPGPSPNVLLQALTMSNANDGINLERLETIGDSFLKYAITNYLYSKYENVHEGKLS 1432
Query: 101 LLRAANISTEKLARVAVKHGFYKFV 125
LR+ +S L R+ + G +++
Sbjct: 1433 HLRSKQVSNLNLYRLGRRKGLGEYM 1457
>gi|387015528|gb|AFJ49883.1| Endoribonuclease Dicer-like isoform 1 [Crotalus adamanteus]
Length = 1917
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY+FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1665 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1724
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1725 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1784
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D + L+ +W ++ ++ P++
Sbjct: 1785 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSEMSLEMVWQVYYPMMRPLIEKFSANV 1844
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1845 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1903
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1904 LRSLKANQP 1912
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1292 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1351
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1352 NCNLYRLGKKKGL 1364
>gi|156371137|ref|XP_001628622.1| predicted protein [Nematostella vectensis]
gi|156215603|gb|EDO36559.1| predicted protein [Nematostella vectensis]
Length = 261
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 99/179 (55%), Gaps = 23/179 (12%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY-----TDSTSYQRLEFIGDAALGLALSNYVFLAYPQ 93
VE + Y F+++ +L +ALTH+SY + ++SY++LEF+GDA L ++ +V +P+
Sbjct: 9 VEASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYLVTRHVLQRFPR 68
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ-------- 145
L PG ++ LR+A ++ LA + ++ F+K +R + AL V+ F +S+
Sbjct: 69 LSPGAITDLRSAVVNNYSLACLTIQRDFHKHMRSMSMALFKVVRRFVRRLSEIEEKETRP 128
Query: 146 --------EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV 196
ED G +I+ PKVL D+ E++ A+YVD D + W + LL PI+
Sbjct: 129 DQLLLTTVEDGRG--GEAIEVPKVLGDLFEALLGALYVDCGRDEELAWSVIYPLLTPII 185
>gi|451856503|gb|EMD69794.1| hypothetical protein COCSADRAFT_341850 [Cochliobolus sativus ND90Pr]
Length = 1575
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 135/298 (45%), Gaps = 29/298 (9%)
Query: 25 TSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAALG 80
T+ S M D +E Y+FK RLL A H SY + SYQRLEF GDA L
Sbjct: 1269 TADASAAMLDMAQKIEMKHPYHFKYPRLLRSAFAHPSYPYMYENIPSYQRLEFAGDALLD 1328
Query: 81 LALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA 140
+A +++ YP DP L+ + +S + L V VK G++ ++ + A L ++++++
Sbjct: 1329 MAFITHLYFKYPDKDPHWLTEHKTPMVSNKFLGAVCVKLGWHVHIKQNTATLTNQIRDYV 1388
Query: 141 ----EAVSQEDNTAVYGGSIK-APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195
EA + Y +I PK LAD++E+ A+I+VD +FD + F L+P
Sbjct: 1389 LEAEEAEREAGGAVDYWVTISDPPKCLADVIEAYVASIFVDSEFDFGVVQTFFEMHLKPF 1448
Query: 196 ---VTLEELQQ--QPQPVTLLFKLCQKNGKQVDIKHWR------------KNRKNIASVY 238
+TL+ + P T L +L N D WR K + A V
Sbjct: 1449 FLDMTLDSYENFASNHPTTRLSRLLTINFGCND---WRMGALETETVIPGKGKAIAAMVL 1505
Query: 239 VDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQK 296
+ G + + A++ A++ ALEKL P D +DE E E +K K
Sbjct: 1506 IHGKVHFYSLGQSGRYARVRASQAALEKLEGLPPFQFRNMYGCDCVDEGVEGEGSKTK 1563
>gi|358332040|dbj|GAA50766.1| dicer-like protein 1 [Clonorchis sinensis]
Length = 774
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 103/192 (53%), Gaps = 10/192 (5%)
Query: 31 EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYV 87
E++ + ++ + Y FKN+ LL EA THSSY+ + YQRLEF+GDA LG +SN +
Sbjct: 568 ELDAGISILQGRLGYVFKNQALLHEARTHSSYSSLKPTVCYQRLEFLGDAVLGYVVSNDL 627
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALD---DKVK--EFAEA 142
F +P DPG L+ R+ ++ LARV V + +RH+ +L DK++ A+
Sbjct: 628 FKRFPDYDPGMLTNHRSLIVNNLVLARVLVDLKLHDGIRHNIPSLPSMVDKLRSVRLADV 687
Query: 143 VSQEDNTAVYGGSIKAP--KVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEE 200
S + +I A K+L D+ ES+ A++VD + DLQ + I LL ++ E
Sbjct: 688 TSLSELREKIQTNITASPMKILGDVFESLIGAVFVDTNGDLQVIQTIVHRLLGKVLMTRE 747
Query: 201 LQQQPQPVTLLF 212
+ + +LF
Sbjct: 748 RARSIRRSEILF 759
>gi|395330621|gb|EJF63004.1| hypothetical protein DICSQDRAFT_83832 [Dichomitus squalens LYAD-421
SS1]
Length = 1330
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 130/268 (48%), Gaps = 29/268 (10%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E + N F LL +ALTH+S + TSY RLEFIGDA L +S Y++ +P L
Sbjct: 1019 LEKLFNSKFNRLDLLGQALTHTSAFSGAEGTSYDRLEFIGDAILDFLVSRYIWERHPYLS 1078
Query: 96 PGQLSLLRA--ANISTEKLARVAVKHGFYKFVRHSAAALDDKV------------KEFAE 141
PG L++L+A A +S + LA V G +++R + L + KE+
Sbjct: 1079 PGGLTMLKANGAMVSNQTLAAFCVHVGLQQYLRMESKDLSTAIQKYIDFLEELRKKEYDF 1138
Query: 142 AVSQEDNTAVY--GGSIKAPKVLADIVESIAAAIYVDIDF---DLQKLW-MIFRGLLEPI 195
A ++ Y ++ PK L+D+VES+ A+YV +F + + + +F+ LE
Sbjct: 1139 ASREQRLPGQYWLDMPMEPPKCLSDVVESLIGALYVSDNFFEVGVGRFFETVFKPFLEAH 1198
Query: 196 VTLEELQQQPQPVTLLFKL----CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQ 251
V L+ L P+ +TLL L CQ N V + R+N V + G +ASA+
Sbjct: 1199 VRLQTLSTNPK-ITLLELLQAEGCQNNAV-VKQQQSRQNMPVQMDVVIHGKVIASATDSS 1256
Query: 252 KEIAKLNAAREALEKLAQSMPVNCDVCE 279
IA + AL+ LA + +C+
Sbjct: 1257 AVIATRKVSLTALDTLANDPELLARMCD 1284
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 50 KRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIST 109
++LL T +++T+ +Y+RLEF+GD+ L + SN+ + P + G L R + IS
Sbjct: 810 QQLLIALSTPAAWTE-FNYERLEFLGDSFLKVVASNFCYATMPSVHVGDLHQARQSIISN 868
Query: 110 EKLARVAVKHGFYKFVRH 127
+ L A + G +V+H
Sbjct: 869 KVLQEGATRVGVPSYVQH 886
>gi|388565188|gb|AFK73581.1| dicer-2 [Nilaparvata lugens]
Length = 1656
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 95/169 (56%), Gaps = 17/169 (10%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQL 94
Y+E +INY FK++ L +AL+H +Y + +YQRLEF+GDA L ++ +++ L
Sbjct: 1406 YLEKLINYKFKDRTFLLQALSHPTYQPNNITPTYQRLEFLGDAILDFLVTTHMYEYCDNL 1465
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE-----DNT 149
PG+L+ LR+A ++ LA +AV+ G +KF+ + L ++ F E D+T
Sbjct: 1466 TPGELTDLRSALVNNVTLASIAVRIGLHKFLLLRSCQLSKVIEAFVERQESRNHDFSDDT 1525
Query: 150 --------AVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLW-MIFR 189
+ G SI+ PK+L D+ ES+ AI++D + L+ W I+R
Sbjct: 1526 LFLIDEIDCIIGESIEVPKILGDVFESLVGAIFLDSNKCLKTTWDFIYR 1574
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
+ LT +S D + +RLE +GD+ L A+S +F+ +P+L GQL++++ I L
Sbjct: 1180 QVLTAASAHDIFNLERLETLGDSFLKYAVSLLLFIRFPELSEGQLTMIKGKVIGNRNLFY 1239
Query: 115 VAVKHGFYKFVR 126
+ G ++
Sbjct: 1240 CGEQKGLGSIIK 1251
>gi|238814324|ref|NP_001154925.1| endoribonuclease Dicer [Danio rerio]
gi|229485378|sp|Q6TV19.2|DICER_DANRE RecName: Full=Endoribonuclease Dicer
Length = 1865
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E+ INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1613 ESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1672
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1673 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1732
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1733 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1792
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1793 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1851
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1852 LRSLKANQP 1860
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1275 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1334
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1335 NCNLYRLGKKKGL 1347
>gi|241896736|emb|CAZ65730.1| dicer-2 protein [Mucor circinelloides f. lusitanicus]
Length = 1608
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 6/164 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
V I+ FK L+ EALTH+S +STS YQRLEF+GDA L + Y+F YP DP
Sbjct: 1328 VTEIVGREFKTPLLIVEALTHASLPNSTSPCYQRLEFLGDAILDFMVIRYLFARYPDADP 1387
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAA----ALDDKVKEFAEAVSQEDNTAVY 152
G ++ L+ + ++ L V ++ G Y+ + H + A++ V E E ++ + Y
Sbjct: 1388 GIITDLKDSCVNNHILGIVCIETGLYRHIIHYSGKLIRAIEFFVSEVEETKARGEAVGEY 1447
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV 196
PKVL+D+VES+ A +VD F L+ + +F PI+
Sbjct: 1448 WVDFNIPKVLSDVVESMLGATFVDAGFRLEAVEELFAKWFLPIL 1491
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 19/156 (12%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EA T S +Y+RLE +GD+ L + +++ +P + G+L LR I L R
Sbjct: 1152 EAYTTPSANMEMNYERLETLGDSLLKFIATIRLYINFPFSNEGELHHLRIRVICNRALYR 1211
Query: 115 VAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG---SIKAPKVLADIVES--- 168
A + FY++V ++ A + + S DN G + K LADIVE+
Sbjct: 1212 SAKRLKFYRYV--TSQAFNRRYWRPPGFTSPADNQETIDGLKYHKLSDKTLADIVEASLG 1269
Query: 169 -----------IAAAIYVDIDFDLQKLWMIFRGLLE 193
+ AAI + I FD K W F+ E
Sbjct: 1270 AAYLSNGLEGGLHAAIQLQIPFDEIKTWDDFKPTFE 1305
>gi|452839019|gb|EME40959.1| hypothetical protein DOTSEDRAFT_56023 [Dothistroma septosporum NZE10]
Length = 1549
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 114/250 (45%), Gaps = 23/250 (9%)
Query: 45 YNFKNKRLLEEALTHSS----YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
Y F+ RLL A H S Y +YQRLEF+GDA L +A +Y+F YP DP L+
Sbjct: 1260 YRFQYPRLLYSAFVHPSLPFMYEKVPNYQRLEFLGDALLDMASISYLFYKYPDKDPQWLT 1319
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA----EAVSQEDNTAVYGGSI 156
+ A +S + L + V GF+K +RH A L+ +V+E+A EA ++ Y ++
Sbjct: 1320 EHKMAMVSNKFLGALCVNIGFHKHLRHHHAKLEHQVREYAIELLEAKRVAGDSRDYWTTV 1379
Query: 157 K-APKVLADIVESIAAAIYVDIDFDLQKLWMIF----RGLLEPIVTLEELQQQPQPVTLL 211
PK L DI+ES A+++D DF+ ++ F R E + + P T L
Sbjct: 1380 SDPPKCLPDIIESYVGALFIDSDFNYAEVQRFFDIHIRWFFEDMKIYDTFANN-HPCTHL 1438
Query: 212 FKLCQKNGKQVDIKHWRKNRKN---------IASVYVDGSFVASASSEQKEIAKLNAARE 262
+ Q D + K + +A V + VA +S + A+L A
Sbjct: 1439 HNMLQTTFGCTDYRLMAKELPSADGLERTDVVAVVMIHDKIVAHSSGKSGRYARLRVANR 1498
Query: 263 ALEKLAQSMP 272
AL L P
Sbjct: 1499 ALAVLDGLAP 1508
>gi|167046039|gb|ABZ10551.1| dicer 2 [Nematostella vectensis]
Length = 1162
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 110/205 (53%), Gaps = 23/205 (11%)
Query: 15 DYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSY-----TDSTSYQ 69
D + K+ T++ S + VE + Y F+++ +L +ALTH+SY + ++SY+
Sbjct: 914 DLSINKQHQTTAVLSEHQLGELALVEASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYE 973
Query: 70 RLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSA 129
+LEF+GDA L ++ +V +P+L PG ++ LR+A ++ LA + ++ F+K +R +
Sbjct: 974 QLEFLGDALLDYLVTRHVLQRFPRLSPGAITDLRSAVVNNYSLACLTIQRDFHKHMRSMS 1033
Query: 130 AALDDKVKEFAEAVS--QEDNT---AVY-------------GGSIKAPKVLADIVESIAA 171
AL V+ F +S +E T VY G +I+ PKVL D+ E++
Sbjct: 1034 MALFKVVRRFVRRLSEIEEKETRPDQVYSKLLLTTVEDGRGGEAIEVPKVLGDLFEALLG 1093
Query: 172 AIYVDIDFDLQKLWMIFRGLLEPIV 196
A+YVD D + W + LL PI+
Sbjct: 1094 ALYVDCGRDEELAWSVIYPLLTPII 1118
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ ALT +S D ++RLE GDA + A+S ++ +P ++ G+LS LR +S ++
Sbjct: 583 LILRALTTTSANDIIDHERLEIYGDAFIKYAISELLYSDFPNVNEGRLSFLRGLRVSNQQ 642
Query: 112 LARVAVKHGFYKFV 125
L + G +
Sbjct: 643 LFYLGRSRGLAPLI 656
>gi|37266499|gb|AAQ90464.1| Dicer1 [Danio rerio]
Length = 1243
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E+ INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 991 ESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1050
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1051 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1110
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1111 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1170
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1171 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1229
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1230 LRSLKANQP 1238
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 653 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 712
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 713 NCNLYRLGKKKGL 725
>gi|328716579|ref|XP_001944314.2| PREDICTED: endoribonuclease Dcr-1-like isoform 1 [Acyrthosiphon
pisum]
Length = 1609
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 103/192 (53%), Gaps = 22/192 (11%)
Query: 23 MLTSLPSPEME-----DAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFI 74
+L ++ PE E D E + Y+F+++ L +A+TH+SY + YQRLEF+
Sbjct: 1339 LLRNVDDPEGELTKLMDGFESFEQHLGYHFQDRSYLLQAMTHASYYPNRLTDCYQRLEFL 1398
Query: 75 GDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDD 134
GDA L ++ +++ Q PG L+ LR+A ++ A +AV++GF+K+ +H + L D
Sbjct: 1399 GDAVLDYLITRHLYEDKRQHSPGALTDLRSALVNNTIFASLAVRNGFHKYFKHLSPGLSD 1458
Query: 135 KVKEFAEAVSQEDNTAV-----YGG--------SIKAPKVLADIVESIAAAIYVDIDFDL 181
V F + +E+ + + G ++ PK L D+ ES+A AIY+D + L
Sbjct: 1459 VVCRFV-TIQEENGHTIDEEFYFLGEDDCEEAEDVEVPKALGDVFESVAGAIYLDSNMSL 1517
Query: 182 QKLWMIFRGLLE 193
+W ++ ++E
Sbjct: 1518 DTVWKVYHKIME 1529
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
+L +ALT S+ D + +RLE IGD+ L A++ Y++ + + G+LS LR+ +S
Sbjct: 1126 VLLQALTMSNANDGINLERLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQVSNLN 1185
Query: 112 LARVA 116
L R+
Sbjct: 1186 LYRLG 1190
>gi|449280710|gb|EMC87946.1| Endoribonuclease Dicer [Columba livia]
Length = 1922
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY+FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1670 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1789
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1790 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1849
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1850 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1908
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1909 LRSLKANQP 1917
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1295 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1354
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1355 NCNLYRLGKKKGL 1367
>gi|94957752|ref|NP_001035555.1| endoribonuclease Dicer [Gallus gallus]
gi|257051054|sp|Q25BN1.3|DICER_CHICK RecName: Full=Endoribonuclease Dicer
gi|90074858|dbj|BAE87103.1| Dicer protein [Gallus gallus]
Length = 1921
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY+FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1669 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1728
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1729 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1788
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1789 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1848
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1849 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1907
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1908 LRSLKANQP 1916
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1294 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1353
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1354 NCNLYRLGKKKGL 1366
>gi|189205613|ref|XP_001939141.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187975234|gb|EDU41860.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 1572
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 127/262 (48%), Gaps = 29/262 (11%)
Query: 32 MEDAVFYVENIINYNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAALGLALSNYV 87
M D +E Y+FK RLL A H SY + +YQRLEF+GD+ L +A ++
Sbjct: 1277 MLDMACKIEAKHPYHFKYPRLLRSAFAHPSYPYIYENIPNYQRLEFLGDSLLDMAFITHL 1336
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF---AEAVS 144
+ YP DP L+ + +S + L V VK G++ +++ + A L +++++ A+
Sbjct: 1337 YYKYPDKDPQWLTEHKTPMVSNKFLGAVCVKLGWHVYIKQNTAILTSQIRDYVLEAQEAE 1396
Query: 145 QEDNTAV-YGGSI-KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLE 199
+E ++AV Y +I + PK LAD++E+ AAI+VD +FD + F L+P +TLE
Sbjct: 1397 REASSAVDYWVTISEPPKCLADVIEAYTAAIFVDAEFDFSVVQDFFNMHLKPFFEDMTLE 1456
Query: 200 ELQQ--QPQPVTLLFKLCQKNGKQVDIKHWR------------KNRKNIASVYVDGSFVA 245
+ P T L ++ N D WR K + A + + G
Sbjct: 1457 AYENFASNHPTTRLSRILSINFGCND---WRMGALEMETLIPGKGKAIAAMIMIHGKVHF 1513
Query: 246 SASSEQKEIAKLNAAREALEKL 267
+ + A++ + ALEKL
Sbjct: 1514 YSLGQSGRYARVRVSHAALEKL 1535
>gi|327259080|ref|XP_003214366.1| PREDICTED: endoribonuclease Dicer-like isoform 2 [Anolis
carolinensis]
Length = 1915
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY+FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1663 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1722
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1723 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1782
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1783 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWHVYYPMMRPLIEKFSANV 1842
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1843 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1901
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1902 LRSLKANQP 1910
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1288 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1347
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1348 NCNLYRLGKKKGL 1360
>gi|254281274|ref|NP_001156875.1| endoribonuclease Dicer [Taeniopygia guttata]
Length = 1921
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY+FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1669 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1728
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1729 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1788
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1789 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1848
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1849 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1907
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1908 LRSLKANQP 1916
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1294 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1353
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1354 NCNLYRLGKKKGL 1366
>gi|193786026|dbj|BAG51002.1| unnamed protein product [Homo sapiens]
Length = 554
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 302 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 361
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 362 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 421
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 422 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 481
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 482 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 540
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 541 LRSLKANQP 549
>gi|326920976|ref|XP_003206741.1| PREDICTED: endoribonuclease Dicer-like [Meleagris gallopavo]
Length = 1921
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY+FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1669 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1728
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1729 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1788
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1789 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1848
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1849 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1907
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1908 LRSLKANQP 1916
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1294 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1353
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1354 NCNLYRLGKKKGL 1366
>gi|422398915|ref|NP_001116485.2| endoribonuclease Dicer-1 [Apis mellifera]
Length = 1952
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 122/262 (46%), Gaps = 33/262 (12%)
Query: 32 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVF 88
M D +E I Y F + L +A TH+SY + YQRLEF+GDA L ++ +++
Sbjct: 1691 MLDGYEELEKNIGYKFHDISYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLY 1750
Query: 89 LAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN 148
Q PG L+ LR+A ++ A +AV+ GF+K+ RH + L + F QE+N
Sbjct: 1751 EDTRQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSIVINRFVRI--QEEN 1808
Query: 149 TAVYGGSIK------------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRG 190
G SI PK L D+ ES+A AIY+D L +W ++
Sbjct: 1809 ----GHSISEEYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYA 1864
Query: 191 LLEPIVTLEELQQQPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASA 247
+++ + P+ L +L K GK + R+ R + V+ GSF
Sbjct: 1865 IMKNEIEQFSTNVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTV-DVFGKGSFKGIG 1923
Query: 248 SSEQKEIAKLNAAREALEKLAQ 269
+ + IAK AA+ AL+KL +
Sbjct: 1924 RNYR--IAKCTAAKCALKKLKR 1943
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 41 NIINYNFKNK---------RLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAY 91
N+ +++F+ K L+ +ALT S+ D + +RLE IGD+ L A++ Y++ Y
Sbjct: 1399 NLFSFDFQPKLENHPGPSPSLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTY 1458
Query: 92 PQLDPGQLSLLRAANISTEKLARVA 116
+ G+LS LR+ +S L R+
Sbjct: 1459 DNIHEGKLSHLRSKQVSNLNLYRLG 1483
>gi|114654619|ref|XP_001154369.1| PREDICTED: endoribonuclease Dicer isoform 6 [Pan troglodytes]
gi|410048689|ref|XP_003952618.1| PREDICTED: endoribonuclease Dicer [Pan troglodytes]
gi|410219112|gb|JAA06775.1| dicer 1, ribonuclease type III [Pan troglodytes]
gi|410256210|gb|JAA16072.1| dicer 1, ribonuclease type III [Pan troglodytes]
gi|410256212|gb|JAA16073.1| dicer 1, ribonuclease type III [Pan troglodytes]
gi|410306234|gb|JAA31717.1| dicer 1, ribonuclease type III [Pan troglodytes]
gi|410306236|gb|JAA31718.1| dicer 1, ribonuclease type III [Pan troglodytes]
gi|410351815|gb|JAA42511.1| dicer 1, ribonuclease type III [Pan troglodytes]
gi|410351817|gb|JAA42512.1| dicer 1, ribonuclease type III [Pan troglodytes]
Length = 1922
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1789
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1790 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1849
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1850 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1908
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1909 LRSLKANQP 1917
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKKGL 1365
>gi|5019620|dbj|BAA78691.1| helicase-MOI [Homo sapiens]
Length = 1924
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1672 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1731
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1732 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1791
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1792 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1851
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1852 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1910
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1911 LRSLKANQP 1919
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1295 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1354
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1355 NCNLYRLGKKKGL 1367
>gi|426248555|ref|XP_004018028.1| PREDICTED: endoribonuclease Dicer [Ovis aries]
Length = 1922
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1789
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1790 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1849
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1850 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1908
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1909 LRSLKANQP 1917
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKKGL 1365
>gi|29294649|ref|NP_085124.2| endoribonuclease Dicer isoform 1 [Homo sapiens]
gi|29294651|ref|NP_803187.1| endoribonuclease Dicer isoform 1 [Homo sapiens]
gi|404312696|ref|NP_001258211.1| endoribonuclease Dicer isoform 1 [Homo sapiens]
gi|257051056|sp|Q9UPY3.3|DICER_HUMAN RecName: Full=Endoribonuclease Dicer; AltName: Full=Helicase with
RNase motif; Short=Helicase MOI
gi|20521696|dbj|BAA76772.2| KIAA0928 protein [Homo sapiens]
gi|119602002|gb|EAW81596.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Homo sapiens]
gi|152012889|gb|AAI50288.1| Dicer 1, ribonuclease type III [Homo sapiens]
gi|307685563|dbj|BAJ20712.1| dicer 1, ribonuclease type III [synthetic construct]
Length = 1922
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1789
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1790 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1849
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1850 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1908
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1909 LRSLKANQP 1917
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKKGL 1365
>gi|440907259|gb|ELR57423.1| Endoribonuclease Dicer [Bos grunniens mutus]
Length = 1922
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1789
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1790 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1849
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1850 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1908
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1909 LRSLKANQP 1917
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKKGL 1365
>gi|119602001|gb|EAW81595.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Homo sapiens]
Length = 1923
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1671 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1730
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1731 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1790
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1791 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1850
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1851 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1909
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1910 LRSLKANQP 1918
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1294 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1353
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1354 NCNLYRLGKKKGL 1366
>gi|332223646|ref|XP_003260983.1| PREDICTED: endoribonuclease Dicer isoform 1 [Nomascus leucogenys]
gi|332223648|ref|XP_003260984.1| PREDICTED: endoribonuclease Dicer isoform 2 [Nomascus leucogenys]
gi|441666339|ref|XP_004091884.1| PREDICTED: endoribonuclease Dicer [Nomascus leucogenys]
Length = 1922
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1789
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1790 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1849
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1850 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1908
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1909 LRSLKANQP 1917
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKKGL 1365
>gi|397525875|ref|XP_003832878.1| PREDICTED: endoribonuclease Dicer isoform 1 [Pan paniscus]
gi|397525877|ref|XP_003832879.1| PREDICTED: endoribonuclease Dicer isoform 2 [Pan paniscus]
Length = 1922
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1789
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1790 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1849
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1850 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1908
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1909 LRSLKANQP 1917
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKKGL 1365
>gi|426377909|ref|XP_004055696.1| PREDICTED: endoribonuclease Dicer isoform 1 [Gorilla gorilla gorilla]
gi|426377911|ref|XP_004055697.1| PREDICTED: endoribonuclease Dicer isoform 2 [Gorilla gorilla gorilla]
gi|426377913|ref|XP_004055698.1| PREDICTED: endoribonuclease Dicer isoform 3 [Gorilla gorilla gorilla]
Length = 1922
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1789
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1790 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1849
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1850 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1908
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1909 LRSLKANQP 1917
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKKGL 1365
>gi|395827764|ref|XP_003787065.1| PREDICTED: endoribonuclease Dicer isoform 1 [Otolemur garnettii]
gi|395827766|ref|XP_003787066.1| PREDICTED: endoribonuclease Dicer isoform 2 [Otolemur garnettii]
Length = 1921
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1669 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1728
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1729 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1788
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1789 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1848
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1849 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1907
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1908 LRSLKANQP 1916
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1291 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1350
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1351 NCNLYRLGKKKGL 1363
>gi|355778829|gb|EHH63865.1| hypothetical protein EGM_16920 [Macaca fascicularis]
Length = 1910
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1658 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1717
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1718 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1777
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1778 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1837
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1838 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1896
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1897 LRSLKANQP 1905
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1281 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1340
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1341 NCNLYRLGKKKGL 1353
>gi|297695799|ref|XP_002825114.1| PREDICTED: endoribonuclease Dicer isoform 1 [Pongo abelii]
gi|297695801|ref|XP_002825115.1| PREDICTED: endoribonuclease Dicer isoform 2 [Pongo abelii]
gi|297695803|ref|XP_002825116.1| PREDICTED: endoribonuclease Dicer isoform 3 [Pongo abelii]
Length = 1922
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1789
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1790 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1849
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1850 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1908
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1909 LRSLKANQP 1917
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKKGL 1365
>gi|327259078|ref|XP_003214365.1| PREDICTED: endoribonuclease Dicer-like isoform 1 [Anolis
carolinensis]
Length = 1918
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY+FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1666 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1725
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1726 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1785
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1786 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWHVYYPMMRPLIEKFSANV 1845
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1846 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1904
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1905 LRSLKANQP 1913
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1291 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1350
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1351 NCNLYRLGKKKGL 1363
>gi|283131646|dbj|BAI63215.1| Dicer [Hemicentrotus pulcherrimus]
Length = 1816
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 132/294 (44%), Gaps = 45/294 (15%)
Query: 8 LPRATVTDYRLLKEA-MLTSLPSPE---MEDAVFY--VENIINYNFKNKRLLEEALTHSS 61
LP + + Y E+ +L S+P+ E + V Y E INY FK++ L +A THSS
Sbjct: 1528 LPVSCLYGYLKQPESPLLRSVPNAEDVLQQQLVGYDGFEKTINYRFKDRAYLLQAFTHSS 1587
Query: 62 YTDST---SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVK 118
Y ++ YQRLEF+GDA L ++ +++ + L PG L+ LR+A ++ A +AVK
Sbjct: 1588 YHRNSITDCYQRLEFLGDALLDYLITRHLYDHHTNLSPGALTDLRSALVNNTIFASLAVK 1647
Query: 119 HGFYKFVRHSAAALDDKVKEFAEAV---------------SQEDNTAVYGGSIKAPKVLA 163
F+K+ + A + + F V S+ D I+ PK L
Sbjct: 1648 FNFHKYFKAYTANMFQVIDNFVTFVDAKNEALGMDSQLKYSEMDGEQEESEDIEVPKALG 1707
Query: 164 DIVESIAAAIYVDIDFDLQKLWMIFRGLLE----------PIVTLEELQQQPQPVTLLFK 213
DI ES+A AIY+D L +W ++ +++ PI + EL + +P T F
Sbjct: 1708 DIFESVAGAIYLDSGMSLNAVWKVYYPMMKQQIEQYASDLPISPVRELLEM-EPETARFG 1766
Query: 214 LCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+K + K +V V G IAK AAR AL L
Sbjct: 1767 PPEKT----------IDGKTRVTVNVVGKGQFKGIGRNYHIAKATAARFALRHL 1810
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
++ ++LT S+ +D + +RLE +GD+ L A++ Y++ YP LD G+LS LR+ +S
Sbjct: 1258 IILQSLTMSNSSDGFNLERLEMLGDSFLKQAVTAYLYCTYPHLDEGKLSFLRSKQVSNFN 1317
Query: 112 L 112
L
Sbjct: 1318 L 1318
>gi|403274211|ref|XP_003928879.1| PREDICTED: endoribonuclease Dicer isoform 1 [Saimiri boliviensis
boliviensis]
gi|403274213|ref|XP_003928880.1| PREDICTED: endoribonuclease Dicer isoform 2 [Saimiri boliviensis
boliviensis]
Length = 1922
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1789
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1790 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1849
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1850 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1908
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1909 LRSLKANQP 1917
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKKGL 1365
>gi|345803797|ref|XP_868526.2| PREDICTED: endoribonuclease Dicer isoform 4 [Canis lupus familiaris]
Length = 1923
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1671 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1730
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1731 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1790
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1791 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1850
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1851 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1909
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1910 LRSLKANQP 1918
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1294 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1353
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1354 NCNLYRLGKKKGL 1366
>gi|21665773|emb|CAB38857.2| hypothetical helicase K12H4.8-like protein [Homo sapiens]
Length = 1912
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1660 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1719
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1720 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1779
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1780 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1839
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1840 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1898
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1899 LRSLKANQP 1907
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1283 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1342
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1343 NCNLYRLGKKKGL 1355
>gi|355683929|gb|AER97238.1| dicer 1, ribonuclease type III [Mustela putorius furo]
Length = 560
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 309 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 368
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 369 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 428
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 429 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 488
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 489 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 547
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 548 LRSLKANQP 556
>gi|383872414|ref|NP_001244801.1| endoribonuclease Dicer [Macaca mulatta]
gi|380811118|gb|AFE77434.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
gi|380811120|gb|AFE77435.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
gi|380811122|gb|AFE77436.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
gi|380811124|gb|AFE77437.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
gi|383417045|gb|AFH31736.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
Length = 1920
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1668 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1727
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1728 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1787
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1788 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1847
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1848 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1906
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1907 LRSLKANQP 1915
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1291 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1350
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1351 NCNLYRLGKKKGL 1363
>gi|296215835|ref|XP_002754306.1| PREDICTED: endoribonuclease Dicer isoform 3 [Callithrix jacchus]
Length = 1922
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1789
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1790 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1849
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1850 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1908
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1909 LRSLKANQP 1917
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKKGL 1365
>gi|402877099|ref|XP_003902280.1| PREDICTED: endoribonuclease Dicer isoform 1 [Papio anubis]
gi|402877101|ref|XP_003902281.1| PREDICTED: endoribonuclease Dicer isoform 2 [Papio anubis]
gi|402877103|ref|XP_003902282.1| PREDICTED: endoribonuclease Dicer isoform 3 [Papio anubis]
Length = 1920
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1668 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1727
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1728 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1787
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1788 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1847
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1848 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1906
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1907 LRSLKANQP 1915
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1291 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1350
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1351 NCNLYRLGKKKGL 1363
>gi|194225335|ref|XP_001496219.2| PREDICTED: endoribonuclease Dicer [Equus caballus]
Length = 1785
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1533 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1592
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1593 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1652
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1653 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1712
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1713 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1771
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1772 LRSLKANQP 1780
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1158 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1217
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1218 NCNLYRLGKKKGL 1230
>gi|308237838|ref|NP_001184123.1| endoribonuclease Dicer [Sus scrofa]
gi|307715909|gb|ADN88174.1| dicer [Sus scrofa]
Length = 1915
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY+FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1663 ERKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1722
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1723 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1782
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1783 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANV 1842
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1843 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1901
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1902 LRSLKANQP 1910
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1291 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1350
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1351 NCNLYRLGKKKGL 1363
>gi|348554455|ref|XP_003463041.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like [Cavia
porcellus]
Length = 1929
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1677 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1736
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1737 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1796
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1797 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1856
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1857 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1915
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1916 LRSLKANQP 1924
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKKGL 1365
>gi|324500060|gb|ADY40039.1| Endoribonuclease dcr-1 [Ascaris suum]
gi|333440972|gb|AEF32761.1| DCR-1 [Ascaris suum]
Length = 1970
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 25/252 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E+ I Y FK++ L +A TH+SY + YQRLEF+GDA L ++ ++F Q
Sbjct: 1706 LEDSICYRFKDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQHPRQYS 1765
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED------NT 149
PG L+ LR+A ++ A +AVK+ F+K L +++F ++++ N
Sbjct: 1766 PGVLTDLRSALVNNTIFASLAVKYNFHKHFVAMCPGLHHMIEKFVRLCAEKNFSGANFNA 1825
Query: 150 AVYGGSI------------KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT 197
+Y + + PK + DI ES+A AIY+D L +W +F L++ T
Sbjct: 1826 EMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLDVVWRVFYNLMKE--T 1883
Query: 198 LEELQQQP--QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIA 255
+EE P P+ L +L + + ++ + K +V + G + IA
Sbjct: 1884 IEECCNNPPKSPIRELLELEPERARFSKLERILETGKVRVTVDIQGKCRFTGMGRSYRIA 1943
Query: 256 KLNAAREALEKL 267
K AA+ AL L
Sbjct: 1944 KCTAAKRALRYL 1955
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 53 LEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKL 112
L +ALT S+ +D + +RLE +GD+ L A+++Y+F P+ G+LS R+ +S L
Sbjct: 1450 LLQALTMSNASDGINLERLETVGDSFLKYAVTDYLFHMNPEQHEGKLSFARSKEVSNCNL 1509
Query: 113 ARVAVKHGF 121
R+ K
Sbjct: 1510 YRLGKKRNL 1518
>gi|158300291|ref|XP_320248.4| AGAP012289-PA [Anopheles gambiae str. PEST]
gi|157013088|gb|EAA00264.4| AGAP012289-PA [Anopheles gambiae str. PEST]
Length = 1672
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 103/195 (52%), Gaps = 28/195 (14%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E + Y F+N+ L +A TH+SYT ++ SYQ+LEF+GDA L +S Y++ P +
Sbjct: 1426 IEATLGYRFRNRTYLLQAFTHTSYTSNSLTGSYQQLEFLGDAVLDFLVSMYIYERNPSMS 1485
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEA------------- 142
PGQL+ LR+A ++ LA V V++ ++ + + L D + +F
Sbjct: 1486 PGQLTDLRSALVNNVNLACVLVRNELHRHILSQSPMLTDAIGKFVAVHRCHRNQGSNWVR 1545
Query: 143 -VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI-FRGLLE------- 193
+++E +T + + PKVL D++E++ AIY+D DL W + FR L +
Sbjct: 1546 LLTEESDTPM-AEYVDVPKVLGDVLEALIGAIYLDSGNDLAATWEVCFRLLRDEIADFTR 1604
Query: 194 --PIVTLEELQQQPQ 206
PI + +L + P+
Sbjct: 1605 KTPIQVVRQLYEHPE 1619
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++N N + LL+ ALT S D + +R E +GDA L A+S Y+ + G
Sbjct: 1186 MDNTANVALQQSDLLQ-ALTTKSSADVFNLERFEVLGDAFLKFAVSVYILFRHTSWHEGY 1244
Query: 99 LSLLRAANISTEKLARVAVKHGF 121
L+ + +S L A+ +G
Sbjct: 1245 LTTCKGRMVSNRNLLYCAMGYGL 1267
>gi|444518375|gb|ELV12129.1| Endoribonuclease Dicer [Tupaia chinensis]
Length = 974
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 722 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 781
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 782 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 841
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 842 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 901
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 902 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 960
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 961 LRSLKANQP 969
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 344 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 403
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 404 NCNLYRLGKKKGL 416
>gi|431839251|gb|ELK01178.1| Endoribonuclease Dicer [Pteropus alecto]
Length = 1921
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1669 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1728
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1729 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1788
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1789 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1848
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1849 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1907
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1908 LRSLKANQP 1916
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1294 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1353
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1354 NCNLYRLGKKKGL 1366
>gi|351701180|gb|EHB04099.1| Endoribonuclease Dicer [Heterocephalus glaber]
Length = 1935
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1683 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1742
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1743 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1802
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1803 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1862
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1863 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1921
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1922 LRSLKANQP 1930
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKKGL 1365
>gi|312376926|gb|EFR23879.1| hypothetical protein AND_11908 [Anopheles darlingi]
Length = 994
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 136/302 (45%), Gaps = 48/302 (15%)
Query: 10 RATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---ST 66
RA +T L A T+ + + E + Y+F+++ L +A+TH+SY+ +
Sbjct: 685 RANITFGGLEAGAHATARELNRLLEGFEVFERSLGYHFQDRSYLLQAMTHASYSPNRLTD 744
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
YQRLEF+GDA L ++ +++ Q PG L+ LR+A ++ A +AV+HGF+++
Sbjct: 745 CYQRLEFLGDAILDYLITRHLYEDRRQHSPGALTDLRSALVNNTIFAALAVRHGFHRYFL 804
Query: 127 HSAAALDDKVKEFAEAVSQEDN----------------------------------TAVY 152
H + L + + F + QE+ A+
Sbjct: 805 HLSPGLQEVIDRFVR-IQQENGHRITEEEYYLPDEDDDMLAADGGFGGGFGEIEGGQALM 863
Query: 153 GGS----IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPV 208
G ++ PK L D+ ESIA AI++D L +W ++R ++ P + P+
Sbjct: 864 GSGEAEDVEVPKALGDVFESIAGAIFLDSGMSLNTVWKVYRKMMGPEIEKFSSSVPKSPI 923
Query: 209 TLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
L ++ K GK + R+ R + V+ G+F + + IAK AA+ AL
Sbjct: 924 RELLEMEPETAKFGKPEKLADGRRVRVTV-EVFGKGTFRGIGRNYR--IAKCTAAKCALR 980
Query: 266 KL 267
+L
Sbjct: 981 QL 982
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 11/87 (12%)
Query: 43 INYNFKNKRLLE-----------EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAY 91
I +NF + LE +ALT S+ D + +RLE IGD+ L A++ Y++ Y
Sbjct: 359 ITFNFDEQPDLEHHPGPSPAIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCRY 418
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVK 118
+ G+LS LR+ +S L R+ +
Sbjct: 419 DNVHEGKLSHLRSKQVSNLNLYRLGRR 445
>gi|348544424|ref|XP_003459681.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like
[Oreochromis niloticus]
Length = 1917
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1665 EKKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1724
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1725 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSEL 1784
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1785 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSRMSLETVWQVYYPMMRPLIEKFSANV 1844
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1845 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1903
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1904 LRSLKANQP 1912
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1287 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1346
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1347 NCNLYRLGKKKGL 1359
>gi|193787170|dbj|BAG52376.1| unnamed protein product [Homo sapiens]
Length = 820
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 568 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 627
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 628 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 687
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 688 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 747
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 748 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 806
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 807 LRSLKANQP 815
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 191 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 250
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 251 NCNLYRLGKKKGL 263
>gi|37360146|dbj|BAC98051.1| mKIAA0928 protein [Mus musculus]
Length = 1475
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1223 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1282
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1283 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSEL 1342
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ +++P++
Sbjct: 1343 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANV 1402
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1403 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1461
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1462 LRSLKANQP 1470
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 852 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 911
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 912 NCNLYRLGKKKGL 924
>gi|406864416|gb|EKD17461.1| putative Dicer-like protein 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1827
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 121/262 (46%), Gaps = 44/262 (16%)
Query: 45 YNFKNKRLLEEALTHSSYTDS----TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
Y+FK RL A TH SY S SYQRLEF+GD+ L +A N+++ A+P DP L+
Sbjct: 1536 YHFKYPRLARSAFTHPSYPYSYEHVPSYQRLEFLGDSLLDMACINFLYHAFPDKDPQWLT 1595
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAA----LDDKVKEFAEAVSQEDNTAVYGG-- 154
+ A +S + L + V GF++ + A + D V + EA +Q + AV G
Sbjct: 1596 EHKMAMVSNQFLGALCVSLGFHRHLLLFNAGFQKQISDYVTDITEARTQAEADAVRAGKS 1655
Query: 155 ----------SIK-APKVLADIVESIAAAIYVDID---------FDLQKLWMIFRGLLEP 194
S++ PK L D+VE+ AI+VD + FD W
Sbjct: 1656 PQDCNPDYWTSVRQPPKCLPDVVEAYIGAIFVDSEYNYAVIEDFFDRHIKWYFLD----- 1710
Query: 195 IVTLEELQQQPQPVTLLFKLCQKNGKQVD-------IKHWRKNRKN-IASVYVDGSFVAS 246
+++ + P T L K Q N D IKH ++ +A V V G VA
Sbjct: 1711 -MSVYDTFANKHPTTFLTKFLQINMGCADWSIMTREIKHVDGSKPTVVAMVIVHGKVVAD 1769
Query: 247 ASSEQKEIAKLNAAREALEKLA 268
A +E +K+NAA++A+ L+
Sbjct: 1770 AKAESSRYSKVNAAKKAMNLLS 1791
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 65 STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKF 124
+Y+RLEF+GD L +A S +F +P+ D + R I + L AVK Y++
Sbjct: 1364 GNNYERLEFLGDCFLKMATSISLFGIHPENDEYSYHVDRMMLICNKNLKNNAVKLKLYQY 1423
Query: 125 VRHSAAALDDKVKEFAEA-VSQEDNTAVYGGSIK-APKVLADIVESIAAA 172
+R A + + + E V ++ TA + K K +AD+ E++ A
Sbjct: 1424 IRSQAFS---RRAWYPEGLVLKQGKTAAAPTTHKLGDKSIADVCEALIGA 1470
>gi|344274190|ref|XP_003408901.1| PREDICTED: endoribonuclease Dicer [Loxodonta africana]
Length = 1920
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY+FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1668 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1727
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1728 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1787
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1788 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLELVWQVYYPMMRPLIEKFSANV 1847
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1848 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1906
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1907 LRSLKANQP 1915
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1289 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1348
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1349 NCNLYRLGKKKGL 1361
>gi|20385913|gb|AAM21495.1|AF430845_1 dicer-like protein [Mus musculus]
Length = 1917
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1665 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1724
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1725 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSEL 1784
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ +++P++
Sbjct: 1785 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANV 1844
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1845 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1903
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1904 LRSLKANQP 1912
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1294 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1353
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1354 NCNLYRLGKKKGL 1366
>gi|74204500|dbj|BAE23515.1| unnamed protein product [Mus musculus]
Length = 514
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 262 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 321
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 322 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSEL 381
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ +++P++
Sbjct: 382 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANV 441
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 442 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 500
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 501 LRSLKANQP 509
>gi|257051057|sp|Q8R418.3|DICER_MOUSE RecName: Full=Endoribonuclease Dicer; AltName:
Full=Double-strand-specific ribonuclease mDCR-1
Length = 1916
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1664 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1723
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1724 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSEL 1783
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ +++P++
Sbjct: 1784 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANV 1843
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1844 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1902
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1903 LRSLKANQP 1911
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKKGL 1365
>gi|117168271|ref|NP_683750.2| endoribonuclease Dicer [Mus musculus]
gi|225000568|gb|AAI72621.1| Dicer1, Dcr-1 homolog (Drosophila) [synthetic construct]
Length = 1906
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1654 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1713
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1714 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSEL 1773
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ +++P++
Sbjct: 1774 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANV 1833
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1834 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1892
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1893 LRSLKANQP 1901
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1283 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1342
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1343 NCNLYRLGKKKGL 1355
>gi|148686841|gb|EDL18788.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Mus musculus]
Length = 1908
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1656 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1715
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1716 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSEL 1775
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ +++P++
Sbjct: 1776 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANV 1835
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1836 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1894
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1895 LRSLKANQP 1903
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1285 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1344
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1345 NCNLYRLGKKKGL 1357
>gi|410928196|ref|XP_003977487.1| PREDICTED: endoribonuclease Dicer-like [Takifugu rubripes]
Length = 1883
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 128/280 (45%), Gaps = 24/280 (8%)
Query: 16 YRLLKEAMLTSLPSPEMEDAVFYV-------ENIINYNFKNKRLLEEALTHSSY---TDS 65
Y LK + L P+ E + ++ E INY F+NK L +A TH+SY T +
Sbjct: 1600 YGWLKIPPRSMLDHPDAEHTLHHLISGFENFERKINYTFQNKAYLLQAFTHASYHYNTIT 1659
Query: 66 TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFV 125
YQRLEF+GDA L ++ +++ Q PG L+ LR+A ++ A +AVK+ ++K+
Sbjct: 1660 DCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYF 1719
Query: 126 RHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK-------------APKVLADIVESIAAA 172
+ + L + +F + +++ ++ PK + DI ES+A A
Sbjct: 1720 KAISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGA 1779
Query: 173 IYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRK 232
IY+D L+ +W I+ ++ P++ PV L ++ + K + +
Sbjct: 1780 IYMDSRMSLETVWQIYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKV 1839
Query: 233 NIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
+ +V V G IAK AAR AL L + P
Sbjct: 1840 RV-TVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1878
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1259 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1318
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1319 NCNLYRLGKKKGL 1331
>gi|148686840|gb|EDL18787.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Mus musculus]
Length = 1916
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1664 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1723
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1724 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSEL 1783
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ +++P++
Sbjct: 1784 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANV 1843
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1844 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1902
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1903 LRSLKANQP 1911
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKKGL 1365
>gi|440655799|gb|AGC22548.1| dicer [Ctenopharyngodon idella]
Length = 1881
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1629 EKKINYMFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1688
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1689 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1748
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1749 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1808
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1809 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1867
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1868 LRSLKANQP 1876
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKKGL 1365
>gi|344248388|gb|EGW04492.1| Endoribonuclease Dicer [Cricetulus griseus]
Length = 1907
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1655 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1714
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1715 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1774
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1775 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANV 1834
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1835 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1893
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1894 LRSLKANQP 1902
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1283 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1342
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1343 NCNLYRLGKKKGL 1355
>gi|346716367|ref|NP_001231198.1| endoribonuclease Dicer [Cricetulus griseus]
gi|257051055|sp|A0MQH0.3|DICER_CRIGR RecName: Full=Endoribonuclease Dicer
gi|116831677|gb|ABK28790.1| DICER [Cricetulus griseus]
Length = 1917
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1665 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1724
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1725 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1784
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1785 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANV 1844
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1845 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1903
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1904 LRSLKANQP 1912
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKKGL 1365
>gi|19072784|gb|AAL84637.1|AF484523_1 endoribonuclease Dicer [Mus musculus]
Length = 361
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 109 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 168
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 169 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSEL 228
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ +++P++
Sbjct: 229 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANV 288
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 289 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 347
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 348 LRSLKANQP 356
>gi|389747383|gb|EIM88562.1| hypothetical protein STEHIDRAFT_155914 [Stereum hirsutum FP-91666
SS1]
Length = 1722
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 127/266 (47%), Gaps = 32/266 (12%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
VE I+ + F+ LL +ALTH S + TSY+RLEFIGDA L + +V+ +L P
Sbjct: 1388 VEAILGHKFERPHLLAQALTHGSIQGYEITSYERLEFIGDAILDFMVIRHVYDRDTKLSP 1447
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE----------AVSQE 146
G ++LL+ A +S LA V + G +++ A L ++ +A+ A++Q+
Sbjct: 1448 GAMTLLKGAMVSNSALAAVCIWAGLDEYLMFEAPVLAHNIRAYAQKLREKQKEEYALAQQ 1507
Query: 147 DNTAV--YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI----VTLEE 200
+ + Y + PK L+D+VESI A Y+ +F + +F +L+P +TL+
Sbjct: 1508 EGRSPGQYWLETEPPKALSDVVESIIGATYISDNFSPVGVEKVFDKILKPFYDKHITLQT 1567
Query: 201 LQQQPQPVTLLFKLCQKNG-------KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKE 253
L P +LF+L Q G +++ R+ + V V +ASA
Sbjct: 1568 LSH--HPTKILFELFQAQGCSQFEITRRIQTDGLRQTAR--CDVIVHDVILASAEDNTSA 1623
Query: 254 IAKLN---AAREALEKLAQSMPVNCD 276
+A A +ALE + M CD
Sbjct: 1624 LAAKRVSLCALDALEGDPEFMRYTCD 1649
>gi|6102924|emb|CAB59269.1| hypothetical protein [Homo sapiens]
Length = 525
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 273 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 332
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 333 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 392
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 393 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 452
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AA+ A
Sbjct: 453 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAAKRA 511
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 512 LRSLKANQP 520
>gi|330913942|ref|XP_003296428.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1]
gi|311331414|gb|EFQ95479.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1]
Length = 1572
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 129/272 (47%), Gaps = 35/272 (12%)
Query: 45 YNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
Y+FK RLL A H SY + +YQRLEF+GD+ L +A +++ YP DP L+
Sbjct: 1290 YHFKYPRLLRSAFAHPSYPYIYENIPNYQRLEFLGDSLLDMAFITHLYYKYPDKDPQWLT 1349
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF---AEAVSQEDNTAV-YGGSI 156
+ +S + L V VK G++ +++ + A L +++++ A+ +E AV Y +I
Sbjct: 1350 EHKTPMVSNKFLGAVCVKLGWHVYIKQNTAILTSQIRDYVLEAQEAERESGGAVDYWVTI 1409
Query: 157 -KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQ--QPQPVTL 210
+ PK LAD++E+ AA++VD +FD + F L+P +TL+ + P T
Sbjct: 1410 SEPPKCLADVIEAYTAALFVDAEFDFSVVQDFFNLHLKPFFEDMTLDAYENFASNHPTTR 1469
Query: 211 LFKLCQKNGKQVDIKHWR------------KNRKNIASVYVDGSFVASASSEQKEIAKLN 258
L ++ N D WR K + A + + G + + A++
Sbjct: 1470 LSRILSINFGCND---WRMGALETETIIPDKGKAIAAMIMIHGKVHFYSLGQSGRYARVR 1526
Query: 259 AAREALEKLAQSMPV------NCDVCEIFDDI 284
A+ ALEKL P CD + D++
Sbjct: 1527 ASHAALEKLDGLPPFEFRKRYGCDCADHGDEM 1558
>gi|380025724|ref|XP_003696618.1| PREDICTED: endoribonuclease Dcr-1-like [Apis florea]
Length = 1966
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 123/263 (46%), Gaps = 33/263 (12%)
Query: 32 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVF 88
M D +E I Y F + L +A TH+SY + YQRLEF+GDA L ++ +++
Sbjct: 1692 MLDGYEELEKNIGYKFHDISYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLY 1751
Query: 89 LAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN 148
Q PG L+ LR+A ++ A +AV+ GF+K+ RH + L + F QE+N
Sbjct: 1752 EDARQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSIVINRFVRI--QEEN 1809
Query: 149 TAVYGGSIK------------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRG 190
G SI PK L D+ ES+A AIY+D L +W ++
Sbjct: 1810 ----GHSISEEYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYT 1865
Query: 191 LLEPIVTLEELQQQPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASA 247
+++ + P+ L +L K GK + R+ R + V+ GSF
Sbjct: 1866 IMKNEIEQFSTNVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTV-DVFGKGSFKGIG 1924
Query: 248 SSEQKEIAKLNAAREALEKLAQS 270
+ + IAK AA+ AL+K+ ++
Sbjct: 1925 RNYR--IAKCTAAKCALKKIKEN 1945
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 41 NIINYNFKNK---------RLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAY 91
N+ +++F+ K L+ +ALT S+ D + +RLE IGD+ L A++ Y++ Y
Sbjct: 1400 NLFSFDFQPKLENHPGPSPSLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTY 1459
Query: 92 PQLDPGQLSLLRAANISTEKLARVA 116
+ G+LS LR+ +S L R+
Sbjct: 1460 DNIHEGKLSHLRSKQVSNLNLYRLG 1484
>gi|321475108|gb|EFX86072.1| hypothetical protein DAPPUDRAFT_309030 [Daphnia pulex]
Length = 1607
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 122/250 (48%), Gaps = 27/250 (10%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y FKNK LL EALTH+SY + YQRLEF+GDA L ++ Y + Q P
Sbjct: 1352 EKRLRYTFKNKALLIEALTHASYIPNRITNCYQRLEFLGDAVLDYLVTRYYYDNPCQYTP 1411
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV----- 151
L+ LR+A ++ E A +AV++ F+ +++H + +L+ + F SQE+N +
Sbjct: 1412 AILTDLRSAMVNNETFAVMAVQNRFHLYLKHLSLSLNVILDRFVR--SQEENGHLLMHNY 1469
Query: 152 ------------YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLE 199
+I PKVL DI ES+A AI+VD L +W + L LE
Sbjct: 1470 FVLEETSEPHQSLASNIDVPKVLGDIFESVAGAIFVDSGMSLDAVWKSYLPFLHD--ALE 1527
Query: 200 ELQQQPQPVTLLFKLCQK--NGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKL 257
+ ++ P++ L L ++ N + + + ++ + G+ V + + AK
Sbjct: 1528 KFNEK-IPISALRVLHERYPNALKFRKSESLADGRLCVAIEIQGTRVFKGAGGNSKTAKS 1586
Query: 258 NAAREALEKL 267
AA+ AL L
Sbjct: 1587 AAAKYALSVL 1596
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVF--LAYPQLDPGQLSLLRAANIST 109
++ EALT + + +R E IGD+ L L +S YV+ + D G+LSL+R I+
Sbjct: 1157 MILEALTLAKTHEGFDMERSETIGDSILKLVISIYVYGETGSDRCDEGRLSLMRMRQINN 1216
Query: 110 EKLARVAVKHGFYKFV 125
+ L ++ K +F
Sbjct: 1217 KHLFKLGAKKDIGEFT 1232
>gi|444841767|gb|AGE12616.1| Dicer 2 [Laodelphax striatella]
Length = 1654
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 94/171 (54%), Gaps = 21/171 (12%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQL 94
Y+E +INY FK + L +AL+H +Y + +YQRLEF+GDA L ++ ++F L
Sbjct: 1404 YLERLINYKFKQRAFLLQALSHPTYQPNNITPTYQRLEFLGDAILDFLITTHIFEHCDNL 1463
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE------------- 141
PG+L+ LR+A ++ LA +AV+ G +KF+ + L ++ F E
Sbjct: 1464 TPGELTDLRSALVNNVTLASIAVRIGLHKFLLLRSFQLSKVIESFVERQESRQHEFTDQT 1523
Query: 142 --AVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLW-MIFR 189
+++ D+ G I+ PK+L D+ ES+ AI++D + L+ W I+R
Sbjct: 1524 LYLINEIDSNV--GECIEVPKILGDVFESLVGAIFLDSNRCLKTTWEFIYR 1572
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKL 112
+ LT +S D + +RLE +GD+ L ++S +F +P+L GQL++++ I L
Sbjct: 1177 QVLTAASAHDIFNLERLETLGDSFLKYSVSLILFTRFPELSEGQLTMIKGKIIGNRNL 1234
>gi|384494893|gb|EIE85384.1| hypothetical protein RO3G_10094 [Rhizopus delemar RA 99-880]
Length = 407
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 99/181 (54%), Gaps = 13/181 (7%)
Query: 28 PSP-----EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDST--SYQRLEFIGDAALG 80
PSP ++ V V ++ Y FKN L++EALTH S DS Y+RLEF+GDA L
Sbjct: 220 PSPASATGQINIDVVRVGEMLGYQFKNYLLVQEALTHGSVMDSLVPCYERLEFLGDAILD 279
Query: 81 LALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA 140
++ Y++ +P PG L LR ++++ L+ V + G K + H +A + + + A
Sbjct: 280 FFVTQYIYQKHPTAAPGILHNLRKSSVNHHILSAVCLNMGLDKHIIHVSAEIAASILK-A 338
Query: 141 EAV-----SQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195
EA+ S+ +T Y + PKVL+D++ES+ AI VD FD+ ++ F +PI
Sbjct: 339 EAIHKDMQSKGKDTDEYWLHLNPPKVLSDVIESLMGAILVDSGFDINQVEEFFERWFKPI 398
Query: 196 V 196
+
Sbjct: 399 L 399
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 25/155 (16%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++ + N F + L+ EA T S Y+RLEF+GDA L +S+Y++ YP +
Sbjct: 50 LKTVHNLQFIDDELMLEAFTSPSANRKQDYERLEFLGDAVLKFIVSSYLYAKYPTYSEAE 109
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFV------------RHSAAALD-DKVKEFAEAVSQ 145
L+ LR S + A +A ++++ H LD +K+K +
Sbjct: 110 LTSLRQVMTSNKSFANIAKDLKLHRYIISQSTVRRFWRPPHFQNVLDSNKIKHWLTHHLV 169
Query: 146 EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD 180
DNT LADI+ES A ++ D
Sbjct: 170 SDNT------------LADIIESTVGAAFLSQSID 192
>gi|109478606|ref|XP_001068155.1| PREDICTED: endoribonuclease Dicer [Rattus norvegicus]
gi|109479876|ref|XP_001069041.1| PREDICTED: endoribonuclease Dicer [Rattus norvegicus]
gi|149025439|gb|EDL81806.1| rCG20888 [Rattus norvegicus]
Length = 1918
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 17/250 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1666 EKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1725
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1726 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1785
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1786 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANV 1845
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1846 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1904
Query: 264 LEKLAQSMPV 273
L L + P+
Sbjct: 1905 LRSLKANQPL 1914
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKQGL 1365
>gi|22830885|dbj|BAC15765.1| double-strand-specific ribonuclease MDCR [Mus musculus]
Length = 1906
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1654 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1713
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1714 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSEL 1773
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ +++P++
Sbjct: 1774 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANV 1833
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + + + K +V V G IAK AAR A
Sbjct: 1834 PRSPVRELLEM-EPETAEFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRA 1892
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1893 LRSLKANQP 1901
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1283 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1342
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1343 NCNLYRLGKKKGL 1355
>gi|432936630|ref|XP_004082201.1| PREDICTED: endoribonuclease Dicer-like [Oryzias latipes]
Length = 1890
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY+F+NK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1638 EKKINYSFQNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1697
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1698 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSEL 1757
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1758 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1817
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1818 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1876
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1877 LRSLKANQP 1885
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1264 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1323
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1324 NCNLYRLGKKKGL 1336
>gi|390332898|ref|XP_790894.2| PREDICTED: endoribonuclease Dicer-like [Strongylocentrotus
purpuratus]
Length = 1815
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 131/294 (44%), Gaps = 45/294 (15%)
Query: 8 LPRATVTDYRLLKEA-MLTSLPSPE---MEDAVFY--VENIINYNFKNKRLLEEALTHSS 61
LP + + Y E+ +L S+P+ E V Y E INY F+++ L +A THSS
Sbjct: 1527 LPVSCLYGYLKQPESPLLRSVPNAEDVLQHQLVGYDGFEKTINYRFRDRAYLLQAFTHSS 1586
Query: 62 YTDST---SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVK 118
Y ++ YQRLEF+GDA L ++ +++ + L PG L+ LR+A ++ A +AVK
Sbjct: 1587 YHRNSITDCYQRLEFLGDALLDYLITRHLYDHHTNLSPGALTDLRSALVNNTIFASLAVK 1646
Query: 119 HGFYKFVRHSAAALDDKVKEFAEAV---------------SQEDNTAVYGGSIKAPKVLA 163
F+K+ + A + + F V S+ D I+ PK L
Sbjct: 1647 FNFHKYFKAYTANMFQVIDNFVTFVDAKNEALGMDSQLKYSEMDGEQEESEDIEVPKALG 1706
Query: 164 DIVESIAAAIYVDIDFDLQKLWMIFRGLLE----------PIVTLEELQQQPQPVTLLFK 213
DI ES+A AIY+D L +W ++ +++ PI + EL + +P T F
Sbjct: 1707 DIFESVAGAIYLDSGMSLNAVWKVYYPMMKQQIEQYASDLPISPVRELLEM-EPETARFG 1765
Query: 214 LCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+K + K +V V G IAK AAR AL L
Sbjct: 1766 PPEKT----------IDGKTRVTVNVVGKGQFKGIGRNYHIAKATAARFALRHL 1809
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
++ ++LT S+ +D + +RLE +GD+ L A++ Y++ YP LD G+LS LR+ +S
Sbjct: 1257 IILQSLTMSNSSDGFNLERLEMLGDSFLKQAVTAYLYCTYPHLDEGKLSFLRSKQVSNFN 1316
Query: 112 L 112
L
Sbjct: 1317 L 1317
>gi|170181362|gb|ACB11577.1| dicer-1 CG4792-PA-like protein [Apis mellifera]
Length = 1946
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 121/258 (46%), Gaps = 25/258 (9%)
Query: 32 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVF 88
M D +E I Y F + L +A TH+SY + YQRLEF+GDA L ++ +++
Sbjct: 1691 MLDGYEELEKNIGYKFHDISYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLY 1750
Query: 89 LAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN 148
Q PG L+ LR+A ++ A +AV+ GF+K+ RH + L + F QE+N
Sbjct: 1751 EDTRQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSIVINRFVRI--QEEN 1808
Query: 149 TAVYG--------------GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194
G ++ PK L D+ ES+A AIY+ L +W ++ +++
Sbjct: 1809 GHSIGEEYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLGSGMSLDAVWSVYYAIMKN 1868
Query: 195 IVTLEELQQQPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQ 251
+ P+ L +L K GK + R+ R + V+ GSF + +
Sbjct: 1869 EIEQFSTNVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTV-DVFGKGSFKGIGRNYR 1927
Query: 252 KEIAKLNAAREALEKLAQ 269
IAK AA+ AL+KL +
Sbjct: 1928 --IAKCTAAKCALKKLKR 1943
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 41 NIINYNFKNK---------RLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAY 91
N+ +++F+ K L+ +ALT S+ D + +RLE IGD+ L A++ Y++ Y
Sbjct: 1399 NLFSFDFQPKLENHPGPSPSLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTY 1458
Query: 92 PQLDPGQLSLLRAANISTEKLARVA 116
+ G+LS LR+ +S L R+
Sbjct: 1459 DNIHEGKLSHLRSKQVSNLNLYRLG 1483
>gi|305354766|emb|CBL30926.1| Dicer protein [Echinococcus multilocularis]
Length = 1981
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 102/231 (44%), Gaps = 51/231 (22%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD-------------------STSYQRLEFIGDAAL 79
+E II Y FKN+RLL EA THS+ D S Y+RLEF+GDA L
Sbjct: 1699 LEEIIGYTFKNRRLLIEAFTHSTCRDLHGPPSDDDGGFHGSVTSISGGYERLEFLGDAVL 1758
Query: 80 GLALSNYVFL--AYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVK 137
A++ ++F A +L PG L+ LR+A ++ +AV+HG + F+R +A L +
Sbjct: 1759 DYAVTRFLFTTDATARLSPGALTDLRSALVNNVVFGALAVRHGLHAFLRAAAPPLTRTMA 1818
Query: 138 EF----------------------------AEAVSQEDNTAVYGGSIKAPKVLADIVESI 169
F A A E + A ++ PK L D+ ES+
Sbjct: 1819 LFLRHHHDVVRGDLDVLIAPEVNACRENKGATASQAEGDRA--NEEVEVPKALGDVFESL 1876
Query: 170 AAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGK 220
A A+++D L LW +F LL + PV L +LC + K
Sbjct: 1877 AGAVFLDSGLCLNTLWRVFFPLLRERIERYSTCVAKSPVRRLLELCPERVK 1927
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
++ ++LT D + +RLE IGD+ L A++ +FL YP+ G LS LR+ +
Sbjct: 1505 MILQSLTLLGAGDFINMERLETIGDSFLKFAVTMDLFLRYPEAHEGHLSSLRSQIVGNSN 1564
Query: 112 LARVAVK 118
L R+ +
Sbjct: 1565 LYRLGCE 1571
>gi|154301554|ref|XP_001551189.1| hypothetical protein BC1G_10104 [Botryotinia fuckeliana B05.10]
Length = 1842
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 133/292 (45%), Gaps = 54/292 (18%)
Query: 45 YNFKNKRLLEEALTHSSY----TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
Y+FK+ RLL A H +Y YQRLEF+GD+ L +A N++F +P DP L+
Sbjct: 1545 YHFKHPRLLRSAFIHPAYLFIYEQIPCYQRLEFLGDSLLDMACVNFLFHNHPTKDPQWLT 1604
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA-- 158
+ A +S + L + VK GF+K + LD +V++ S + N A+ A
Sbjct: 1605 EHKMAIVSNQFLGALCVKLGFHKHL----LTLDSQVQKMIADYSSDINEALIQAKTDAKR 1660
Query: 159 -------------------PKVLADIVESIAAAIYVDIDFD---LQKLW-MIFRGLLEPI 195
PK L DIVE+ AI+VD ++D ++K + M R E +
Sbjct: 1661 VGKVEDDYARDYWIAVRQPPKCLPDIVEAFIGAIFVDSEYDYGEVEKFFEMHIRWYFEDM 1720
Query: 196 VTLEELQQQPQPVTLLFKLCQKN---------GKQVDIKHWRKNRKNIASVYVDGSFVAS 246
+ + P T L QKN K+V + RKN + V + V++
Sbjct: 1721 GIYDTYANK-HPTTFLTNFLQKNMGCEDWAPVSKEVPGEDGRKNVV-VCGVIIHNKVVST 1778
Query: 247 ASSEQKEIAKLNAAREALEKLAQSMPV-------NCDVCEIFDDIDEKFEIE 291
A++E A++ AAR AL KL + M V C CE D +DE+ IE
Sbjct: 1779 ATAESMRYARVGAARNALRKL-EGMSVREFRDEYGCS-CE-GDVVDEEGNIE 1827
>gi|80979095|gb|ABB54750.1| Dicer-2 [Drosophila melanogaster]
Length = 1715
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 135/299 (45%), Gaps = 70/299 (23%)
Query: 37 FYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQ 93
FY+E + Y FK++R L +ALTH SY + SYQ LEFIGDA L +S Y+F +
Sbjct: 1427 FYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTK 1486
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA------------- 140
++PG L+ LR+A ++ LA + V+H + F+ A L + + +F
Sbjct: 1487 MNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNY 1546
Query: 141 ------------------------------EAVSQEDNTAV-------YGGSIKAPKVLA 163
+ +SQE V ++ PK L
Sbjct: 1547 VRILLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALG 1606
Query: 164 DIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ--QPQPVTLLFKLCQ-KNGK 220
D++E++ AA+Y+D DLQ+ W + L EP ELQ+ + P+ + +L + K+ K
Sbjct: 1607 DVLEALIAAVYLDCR-DLQRTWEVIFNLFEP-----ELQEFTRKVPINHIRQLVEHKHAK 1660
Query: 221 QVDIKHWRKNRKNIAS---VYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD 276
V + + S ++ + K+ AKL+AA+ AL++L++ CD
Sbjct: 1661 PVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK-----CD 1714
>gi|391341486|ref|XP_003745061.1| PREDICTED: endoribonuclease Dicer [Metaseiulus occidentalis]
Length = 1863
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 115/248 (46%), Gaps = 21/248 (8%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFL-AYPQLD 95
E I Y FKNK L +A TH+SY T + YQRLEF+GDA L ++ Y++ Q
Sbjct: 1575 EERIGYKFKNKGFLLQAFTHASYHYNTLTDCYQRLEFLGDAVLDYLITRYLYEDPVKQHS 1634
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY--- 152
PG L+ LR+A ++ A +AVK+ F+K+ + + L + F +
Sbjct: 1635 PGALTDLRSALVNNTFFAALAVKYEFHKYFLNLSPRLFKLIHRFVSTKKHLSGKQYFEKY 1694
Query: 153 ---------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
I+ PK L DI ES+A AIY+D L W ++ +++P +
Sbjct: 1695 YLGEDECEEAEEIEVPKALGDIFESVAGAIYLDSGMSLDTTWNVYLAMMKPEIEYFSKHV 1754
Query: 204 QPQPVTLLFKLCQKNGK--QVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
P+ L +L + K + ++ K R + V+ GSF+ K IAK AA+
Sbjct: 1755 PKSPIRELLELEPQTAKFEKAELTLNGKIRVKV-EVFGKGSFIGIG--RNKRIAKCTAAK 1811
Query: 262 EALEKLAQ 269
AL + Q
Sbjct: 1812 RALRSVEQ 1819
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
+L +ALT S+ D + +RLE +GD+ L A++NY++ Y + G+LS LR+ IS
Sbjct: 1362 ILLQALTMSNANDGINLERLETVGDSFLKYAITNYLYCTYLGVHEGKLSFLRSKQISNVN 1421
Query: 112 LARVAVKHG 120
L R+ + G
Sbjct: 1422 LYRLGKELG 1430
>gi|347440705|emb|CCD33626.1| hypothetical protein [Botryotinia fuckeliana]
Length = 984
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 133/292 (45%), Gaps = 54/292 (18%)
Query: 45 YNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
Y+FK+ RLL A H +Y YQRLEF+GD+ L +A N++F +P DP L+
Sbjct: 687 YHFKHPRLLRSAFIHPAYLFIYEQIPCYQRLEFLGDSLLDMACVNFLFHNHPTKDPQWLT 746
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA-- 158
+ A +S + L + VK GF+K + LD +V++ S + N A+ A
Sbjct: 747 EHKMAIVSNQFLGALCVKLGFHKHL----LTLDSQVQKMIADYSSDINEALIQAKTDAKR 802
Query: 159 -------------------PKVLADIVESIAAAIYVDIDFD---LQKLW-MIFRGLLEPI 195
PK L DIVE+ AI+VD ++D ++K + M R E +
Sbjct: 803 VGKVEDDYARDYWIAVRQPPKCLPDIVEAFIGAIFVDSEYDYGEVEKFFEMHIRWYFEDM 862
Query: 196 VTLEELQQQPQPVTLLFKLCQKN---------GKQVDIKHWRKNRKNIASVYVDGSFVAS 246
+ + P T L QKN K+V + RKN + V + V++
Sbjct: 863 GIYDTYANK-HPTTFLTNFLQKNMGCEDWAPVSKEVPGEDGRKNVV-VCGVIIHNKVVST 920
Query: 247 ASSEQKEIAKLNAAREALEKLAQSMPV-------NCDVCEIFDDIDEKFEIE 291
A++E A++ AAR AL KL + M V C CE D +DE+ IE
Sbjct: 921 ATAESMRYARVGAARNALRKL-EGMSVREFRDEYGCS-CE-GDVVDEEGNIE 969
>gi|378405592|gb|AFB82635.1| dicer-2 [Marsupenaeus japonicus]
Length = 1502
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 16/243 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E I Y F+++ + +A+THSSY + + YQRLEF+GDA L ++ ++F +
Sbjct: 1242 LEKKIGYTFRDRSFIVQAVTHSSYVNNQVTDCYQRLEFLGDAVLDYLVTCHIFCRFTDYS 1301
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF---------AEAVSQE 146
PGQLS LR+ + + L R A K ++ + H L+ + +F E ++ E
Sbjct: 1302 PGQLSDLRSYFVKNDTLGRAAAKGKLHQHLLHINPKLEASIDKFLSILHQDPLGEELNTE 1361
Query: 147 DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQ 206
D+ ++ PK L D+VE+I A+Y+D + L+ W + +LE ++ Q
Sbjct: 1362 DDVQD-CEDVEIPKALGDMVEAIIGAVYLDSNRSLKVAWQVIERILEDLLNTSIQTIQLN 1420
Query: 207 PVTLLFKLCQKNGKQVDIKHWRKN--RKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 264
P+ L + KQV+ + K+ V V G +AS + +AK A AL
Sbjct: 1421 PIRQLLEEVPGE-KQVEFVKGEDDGSEKSTYVVKVKGFGTFTASGKNYRVAKKKVAAIAL 1479
Query: 265 EKL 267
+++
Sbjct: 1480 KEI 1482
>gi|42733596|ref|NP_976235.1| endoribonuclease Dicer [Bos taurus]
gi|257051053|sp|Q6TUI4.3|DICER_BOVIN RecName: Full=Endoribonuclease Dicer
gi|38679195|gb|AAR26432.1| dicer [Bos taurus]
Length = 1923
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1671 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1730
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1731 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1790
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1791 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1850
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1851 PRSPVRELLEMEPEITKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1909
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1910 LRSLKANQP 1918
>gi|296475171|tpg|DAA17286.1| TPA: endoribonuclease Dicer [Bos taurus]
Length = 1922
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1671 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1730
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1731 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1790
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1791 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1850
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1851 PRSPVRELLEMEPEITKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1909
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1910 LRSLKANQP 1918
>gi|241061228|ref|XP_002408100.1| dicer-1, putative [Ixodes scapularis]
gi|215492369|gb|EEC02010.1| dicer-1, putative [Ixodes scapularis]
Length = 2050
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 119/247 (48%), Gaps = 24/247 (9%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY-----TDSTSYQRLEFIGDAALGLALSNYVFLAYPQL 94
E I Y F+++ L +A TH+SY TD YQRLEF+GDA L ++ +++ +
Sbjct: 1798 EARIGYRFRDRAYLLQAFTHASYHYNRLTDC--YQRLEFLGDAVLDYLITRHLYDDPQRH 1855
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY-- 152
PG L+ LR+A ++ A +AVK+ F+++ ++ + L ++ F E D +
Sbjct: 1856 SPGTLTDLRSALVNNTFFASLAVKYDFHRYFKNVSPGLFAVIQRFVETKCHSDGFRYHEK 1915
Query: 153 ----------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQ 202
++ PK L DI ES+A AI++D + L +W ++ +++P +
Sbjct: 1916 YYLEEEECEEAEEVEVPKALGDIFESVAGAIFLDSNMSLDTVWRVYYAMMKPEIEYFSTH 1975
Query: 203 QQPQPVTLLFKLCQKNGK--QVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
P+ L +L + K + ++ K R + V+ G FV K IAK AA
Sbjct: 1976 VPKSPIRELLELEPQTAKFERAEMTLNGKVRIRV-EVFGKGRFVGVG--RNKRIAKCTAA 2032
Query: 261 REALEKL 267
+ AL L
Sbjct: 2033 KRALRAL 2039
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 46/76 (60%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
++ +++ + +L +ALT S+ D + +RLE +GD+ L A++ +++ +P + G+LS
Sbjct: 1541 DLSSHSGPSPSILLQALTMSNANDGINLERLETVGDSFLKYAVTAHLYCTHPSVHEGKLS 1600
Query: 101 LLRAANISTEKLARVA 116
LR+ IS L R+
Sbjct: 1601 HLRSRQISNLNLYRLG 1616
>gi|406913885|gb|EKD53182.1| hypothetical protein ACD_61C00122G0015 [uncultured bacterium]
Length = 234
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 123/243 (50%), Gaps = 38/243 (15%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
++++I Y+FKN+ LLE ALTH S + S SY+RLEF+GDA L + +S Y+F YP
Sbjct: 9 LQDLIGYHFKNESLLETALTHRSCLNQPGVSESYERLEFLGDAILEMLISIYLFEKYPDK 68
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
G L+ R+A + TE L+ V+V + F ++R S E V+ G
Sbjct: 69 MEGYLTAARSATVRTESLSEVSVHNRFNDYIRMSK----------GEEVT---------G 109
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP----IVTLEELQQQPQPVTL 210
+ +L D++ES+ A+Y+D D K + F + P I+ L L+ P +L
Sbjct: 110 GRQNLSILEDVIESLIGALYIDGGLDAAKNF--FESFILPNAQGIIALNRLK---DPKSL 164
Query: 211 LFKLCQKNGKQVDI------KHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 264
L + Q G+ I N+ +V ++G +AS + + K+ A+ AA++AL
Sbjct: 165 LQEKVQSAGQSSPIYQTIGESGLDHNKTFEVAVSIEGKQLASGTGKNKQEAEQKAAQKAL 224
Query: 265 EKL 267
+ L
Sbjct: 225 DAL 227
>gi|393246311|gb|EJD53820.1| ribonuclease III [Auricularia delicata TFB-10046 SS5]
Length = 1227
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 146/307 (47%), Gaps = 42/307 (13%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+VE ++ + L+ +ALTHS S TSYQRLEF+GDA L L + Y++ Y +LD
Sbjct: 921 HVERLLGRPIQRPHLVAQALTHSVIDSSLATSYQRLEFLGDAILDLLVVRYIW-RYEKLD 979
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKV------------KEFAEAV 143
P L+LL+AA +S LA V V+ G +K + H++ +L K+ KE A A
Sbjct: 980 PEALTLLKAAMVSNSTLAAVCVQCGLHKHIIHASPSLGVKIDNYVKALHSARDKERALAQ 1039
Query: 144 SQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
S+ Y ++ PK L+D++ES+ A+++ ++ + L F +L + E ++
Sbjct: 1040 SEVRQPVQYWLELEHPKPLSDLIESLLGALFISENYAIAPLEAFFENVLR-LFYDEHIRL 1098
Query: 204 ---QPQPVTLLFKL-----CQK---------------NGKQVDIKHWRKNRKNIASVYVD 240
P T LFK+ CQ+ +GK + + ++ + A V +
Sbjct: 1099 SSCSSHPTTTLFKMLESRSCQRFEMEKTTQKAAAYHIDGK-LSLTSAFQDYSDCAVVVIH 1157
Query: 241 GSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQ--KLH 298
+ +ASA+ K A A+ EAL L + C+ + K + + A++ K
Sbjct: 1158 DTVLASATGSNKGAAARKASFEALLALERDPGFLVRTCDCRATLASKKQAKQAERAAKAA 1217
Query: 299 ELCGKKK 305
GKKK
Sbjct: 1218 NTGGKKK 1224
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 9/132 (6%)
Query: 1 MNPESFTLPRAT---VTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKN----KRLL 53
++P F +P V + A L +ED + ++N+ F + +RLL
Sbjct: 665 IDPPKFIIPEVCARFVIPASTFETAYLVPCCLRRIEDTLLV--KLLNHQFFDNEIEERLL 722
Query: 54 EEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLA 113
A++ S YQRLE +GD+ L S +F+ P +L L R S L
Sbjct: 723 LSAISSPSLCGDLDYQRLELLGDSVLKFLASAALFVRKPTSSESELHLGRQNIFSNRALT 782
Query: 114 RVAVKHGFYKFV 125
+ A + G F+
Sbjct: 783 QAARRAGLPPFI 794
>gi|340712553|ref|XP_003394821.1| PREDICTED: endoribonuclease Dicer-like [Bombus terrestris]
Length = 1488
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 19/193 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E + Y F N+ L +A TH SYT + YQRLEF+GDA L ++NY++ + L+
Sbjct: 1236 IETKLGYQFNNRGYLLQAFTHPSYTPNNMTECYQRLEFLGDAILDFLITNYIYESCGNLN 1295
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV---- 151
PG L+ LR+A ++ A + V+HG + + A L++ ++ F + +E N AV
Sbjct: 1296 PGALTDLRSALVNNITFACLTVRHGLHIALLSYAPKLNNVIERFVK-FQEERNYAVNDEL 1354
Query: 152 -----------YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEE 200
+ PKVL DI ES+ AIY+D + +L +W I ++ +
Sbjct: 1355 LWILLEEDECNMAEHVDVPKVLGDIFESVIGAIYLDSNKNLSVVWNIVYSIMHKEIDEFS 1414
Query: 201 LQQQPQPVTLLFK 213
QP+ +L++
Sbjct: 1415 KNIPKQPIRVLYE 1427
>gi|453081348|gb|EMF09397.1| dicer-like protein 1 [Mycosphaerella populorum SO2202]
Length = 1541
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 129/272 (47%), Gaps = 28/272 (10%)
Query: 39 VENIINYNFKNKRLLEEALTHSS--YTDST--SYQRLEFIGDAALGLALSNYVFLAYPQL 94
VE Y FK RLL A H S Y + +YQRLEF+GDA L A ++F YP
Sbjct: 1246 VEREHAYRFKYPRLLYSAFMHPSVPYINEKVPNYQRLEFLGDALLDQASITWLFNKYPDK 1305
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA----EAVSQEDNTA 150
DP L+ + A +S + L V V GF+K +RH A L ++ +A EA ++
Sbjct: 1306 DPQWLTEHKMAMVSNKFLGAVCVNIGFHKHLRHYHAVLQSQITAYAADLMEAKRIAGDSR 1365
Query: 151 VYGGSIK-APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQ 206
Y ++ PK L DIVE+ A+++D DF+ ++ F ++ +T+ +
Sbjct: 1366 DYWTTVSDPPKCLPDIVEAYIGALFIDSDFNYGEVQRFFHEHVQWYFEDMTVYDTFANNH 1425
Query: 207 PVTLLFKLCQKNGKQVDIKHWRK--------NRKN-IASVYVDGSFVASASSEQKEIAKL 257
P T L + Q +D + K RK+ +A V + +AS++ + A+L
Sbjct: 1426 PCTHLHNMLQTTFGCMDYRLMAKELPSVDGMERKDVVAVVMIHDQVMASSAGKSGRYARL 1485
Query: 258 NAAREALEKLAQSMPVN------CDVCEIFDD 283
A +ALEKL P + CD C+I +D
Sbjct: 1486 RVANKALEKLDGLAPFDFRARYRCD-CKIDED 1516
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEFIGD L A + F+ P + + R + + L VA+K Y+++R
Sbjct: 1068 NYERLEFIGDTFLKTATTISTFIQNPNENEFAFHVRRMQMLCNKNLFGVALKLKLYEYIR 1127
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIK-----------APKVLADIVESIAAAIYV 175
A ++ + E + T V G K K +AD+ E++ A Y+
Sbjct: 1128 SIAF---NRRYWYPEGLKLLSGTGVIKGQEKENFHEPRNHDLGEKTIADVCEALIGAAYL 1184
Query: 176 DID 178
D
Sbjct: 1185 TWD 1187
>gi|357607884|gb|EHJ65725.1| dicer-2 [Danaus plexippus]
Length = 1871
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 26/205 (12%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E I+ Y FK+ LL EAL+H+SY + SY+RLEF+GDA L ++ Y++ L
Sbjct: 1620 IETILGYKFKDPSLLLEALSHASYIRNRYTRSYERLEFLGDAILDFLITAYIYENCGDLS 1679
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYK-FVRHSAAALDDKVKEFAEAVSQED------- 147
PG L+ LR+A ++ A V+ G +K F L++ +K F E Q D
Sbjct: 1680 PGDLTDLRSALVNNVTFASYVVRLGLHKYFCSQFNGVLENAIKTFVEHQEQLDHVLLEDV 1739
Query: 148 ---------NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTL 198
N A Y I PK L+DI ES+ A+++D DL+ +W + ++ +
Sbjct: 1740 LYLIEEEDCNIAQY---IDVPKALSDIFESLTGAMFLDSGGDLKLVWKVIYRIMHKEIHD 1796
Query: 199 EELQQQPQPVTLLFKL---CQKNGK 220
++ QPV +L ++ C GK
Sbjct: 1797 FSMKVPKQPVRVLMEMIHACPSFGK 1821
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 56 ALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARV 115
ALT D+ + +R E +GD+ L A S Y+F +PQ+D GQL+ L++ I L
Sbjct: 1387 ALTLIKSNDTFNLERSETLGDSFLKFAASLYLFHKFPQMDEGQLTNLKSRLIGNRNLYYA 1446
Query: 116 AVKHGF 121
+ G
Sbjct: 1447 GERAGL 1452
>gi|296089026|emb|CBI38729.3| unnamed protein product [Vitis vinifera]
Length = 227
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 15/207 (7%)
Query: 165 IVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDI 224
I ESIA AI++D D +W +F+ LL P+VT E L P V L + CQ+ + ++
Sbjct: 23 ICESIAGAIFLDSGRDTAVVWKVFQPLLHPMVTPETLPMHP--VRELQERCQQQAEGLEY 80
Query: 225 KHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDI 284
K R V++DG + A + QK++A+ AAR AL L + + E +
Sbjct: 81 KATRSGNLATVEVFIDGVQIGIAQNPQKKMAQKLAARNALVVLKER-----ETAEAKEGD 135
Query: 285 DEKFEIEA------AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVL 338
DE + + +Q L+++C ++ WP P Y+ + GP+H K+F AV++ T D
Sbjct: 136 DENGKKKKNGSQTFTRQTLNDICLRRNWPMPVYRCVNEGGPAHAKRFTFAVRVNTNDKGW 195
Query: 339 F--ITGDEKSRVKDAENSAASMMLRAL 363
G+ VK A++SAA ++L L
Sbjct: 196 TDECIGEPMPSVKKAKDSAAVLLLELL 222
>gi|302422698|ref|XP_003009179.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102]
gi|261352325|gb|EEY14753.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102]
Length = 1510
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 119/266 (44%), Gaps = 41/266 (15%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTDS----TSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
E + FK+ LL A H SY +YQRLEF+GDA L + +++F +P D
Sbjct: 1223 EGNFDMAFKSPALLRSAFKHPSYPRQFESVPNYQRLEFLGDALLDMVCVDFLFRKFPDAD 1282
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
P L+ + A +S L ++V+ GFY+ V H + + +++K++ +A++ A
Sbjct: 1283 PQWLTEHKMAMVSNHFLGSLSVELGFYRRVLHFSGVMANQIKDYVDALTHARQEAEAAAQ 1342
Query: 156 IKA-------------PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLE 199
I PK L+D+VE+ AI+VD ++ ++ F + P + L
Sbjct: 1343 ISGVISQDYWLNVQHPPKFLSDVVEAYIGAIFVDSGYNYSQVQAFFEKHIRPFFADMALY 1402
Query: 200 ELQQQPQPVTLLFKLCQKNGKQVDIKHWR------------------KNRKNIASVYVDG 241
+ QPVT L ++ Q++ + WR + I V G
Sbjct: 1403 DSFASSQPVTTLARMMQQD---FGCQDWRLLVSELPPSCEDGGATAITETEVICGFMVHG 1459
Query: 242 SFVASASSEQKEIAKLNAAREALEKL 267
+ A S + AK+ AA+ A+EKL
Sbjct: 1460 RILLHAKSSSGQYAKVGAAKRAVEKL 1485
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 65 STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKF 124
+Y+RLEF+GD L +A + +F P + + + R I + L VA+K ++
Sbjct: 1109 GNNYERLEFLGDCFLKMATTIALFTRIPDSNEFEYHVERMLLICNQNLFNVALKKNLQEY 1168
Query: 125 VRHSAAALDDKVKEFAEAVSQEDNTA--VYGGSIKAPKVLADIVESIAAAIYV 175
+R D+ + + + Q+ A A K +AD+ E++ A Y+
Sbjct: 1169 IRSKQF---DRRSWYPQGLKQKAGKAQGAQNSHSLADKSIADVCEAMIGASYL 1218
>gi|168021275|ref|XP_001763167.1| dsRNA-specific nuclease dicer and related ribonuclease
[Physcomitrella patens subsp. patens]
gi|162685650|gb|EDQ72044.1| dsRNA-specific nuclease dicer and related ribonuclease
[Physcomitrella patens subsp. patens]
Length = 961
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 96/352 (27%), Positives = 161/352 (45%), Gaps = 37/352 (10%)
Query: 39 VENIINYNFKNKRLLEE---ALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
V I+ KRL + ALT +S ++ SY+R E + DA L +S+ +FL +P
Sbjct: 492 VGRIVTAVHSGKRLYVDSVLALTAASCQETFSYERAELLSDAYLEWVVSHRLFLKFPSKH 551
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFV--------RHSA----AALDDKVKEFAEAV 143
GQL+ +R +S L + A++ G ++ R +A A D+ +++ +
Sbjct: 552 EGQLTRMRQKIVSNSVLYQHALEKGLQSYIQADRFAPSRWAAPGVPPAFDEDLRD-GDDS 610
Query: 144 SQEDNTAVYGGSIKAPKVLADIVESIA-----AAIYVDIDFDLQKLW-------MIFRGL 191
+E V ++ L D+ + A + V + L +F L
Sbjct: 611 DKESKPEVEREVVEIVGRLTDLRAAAVNNENFARVAVKHSYHLHLRHGSTALETQVFEPL 670
Query: 192 LEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQ 251
L+P+V+ E L PV L + CQ+ + ++ K R VYVDG + S S Q
Sbjct: 671 LQPMVSPETLPI--HPVRGLQERCQQEAEGLEYKVSRAESVATVEVYVDGVQIGSTQSAQ 728
Query: 252 KEIAKLNAAREALEKLAQSMPVNCDVCEIFDDID-----EKFEIEAAKQKLHELCGKKKW 306
K++A+ AR AL KL + D++ + ++ +++LC K++W
Sbjct: 729 KKMAQKLGARNALVKLKDKEVIKVKAEAENGDLNAGKSSKNGHTNFTRKTINDLCLKRQW 788
Query: 307 PKPSYKIEKDEGPSHDKKFMSAVQI-ATTDG-VLFITGDEKSRVKDAENSAA 356
P P YK + GP+H KKF +V++ TTDG G+ + VK A++SAA
Sbjct: 789 PMPQYKCVLESGPAHAKKFTFSVRVLTTTDGWTEECVGEPMASVKKAKDSAA 840
>gi|289711908|gb|ACC62400.2| ribonuclease III [Penaeus monodon]
Length = 2473
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 120/251 (47%), Gaps = 32/251 (12%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E I Y F+++ L +A TH+SY + YQRLEF+GDA L ++ +++ Q P
Sbjct: 2221 EEKIGYTFRDRSYLLQAFTHASYYKNRLTGCYQRLEFLGDAVLDYLITRHLYEDKRQHSP 2280
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN-------- 148
G L+ LR+A ++ A +AVK+ ++K+ RH + LD +++F + QE+N
Sbjct: 2281 GALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKM--QEENGHKINEEY 2338
Query: 149 ------TAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQ 202
I+ PK L D+ ES+A AI++D L +W ++ ++ E++
Sbjct: 2339 YFMEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMM-----CREIE 2393
Query: 203 Q-----QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-SVYVDGSFVASASSEQKEIAK 256
Q P+ L ++ + K + + ++ ++ GSF S IAK
Sbjct: 2394 QFSGVVPKSPIRELLEMEPETAKFGKPERLVDGKVRVSVEIFGKGSF--SGVGRNYRIAK 2451
Query: 257 LNAAREALEKL 267
AA+ AL L
Sbjct: 2452 STAAKRALRHL 2462
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 52/91 (57%)
Query: 31 EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLA 90
EM + + +++N+ + ++ +ALT S+ D + +RLE IGD+ L A++ +++
Sbjct: 1943 EMSFSFDFQPDLLNHPGPSPSVILQALTMSNANDGVNLERLETIGDSFLKYAITTFLYCT 2002
Query: 91 YPQLDPGQLSLLRAANISTEKLARVAVKHGF 121
YPQ G+LS LR+ +S L R+ + G
Sbjct: 2003 YPQRHEGKLSYLRSKQVSNLNLYRLGKRKGL 2033
>gi|71051733|gb|AAH98796.1| Dicer1 protein [Rattus norvegicus]
Length = 401
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 119/251 (47%), Gaps = 19/251 (7%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 149 EKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 208
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 209 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 268
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 269 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANV 328
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVD-GSFVASASSEQKEIAKLNAARE 262
PV L ++ + K + + + V G F S + IAK AAR
Sbjct: 329 PRSPVRELLEMEPETAKFSPAERTYDGKVRVTVELVGKGKFKGVGRSYR--IAKSAAARR 386
Query: 263 ALEKLAQSMPV 273
AL L + P+
Sbjct: 387 ALRSLKANQPL 397
>gi|254281220|ref|NP_001123390.2| endoribonuclease Dicer [Xenopus (Silurana) tropicalis]
gi|238064965|sp|B3DLA6.2|DICER_XENTR RecName: Full=Endoribonuclease Dicer
gi|169261418|gb|ACA52289.1| endoribonuclease [Xenopus (Silurana) tropicalis]
Length = 1893
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 17/244 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1641 EKKINYPFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1700
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1701 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSEL 1760
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ +++P++
Sbjct: 1761 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWHVYYPMMQPLIEKFSANV 1820
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1821 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1879
Query: 264 LEKL 267
L L
Sbjct: 1880 LRSL 1883
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1270 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1329
Query: 109 TEKLARVAVKHG 120
L R+ K G
Sbjct: 1330 NCNLYRLGKKKG 1341
>gi|148829108|gb|ABR14013.1| Dicer-1 [Penaeus monodon]
Length = 2473
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 120/251 (47%), Gaps = 32/251 (12%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E I Y F+++ L +A TH+SY + YQRLEF+GDA L ++ +++ Q P
Sbjct: 2221 EEKIGYTFRDRSYLLQAFTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKRQHSP 2280
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN-------- 148
G L+ LR+A ++ A +AVK+ ++K+ RH + LD +++F + QE+N
Sbjct: 2281 GALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKM--QEENGHKINEEY 2338
Query: 149 ------TAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQ 202
I+ PK L D+ ES+A AI++D L +W ++ ++ E++
Sbjct: 2339 YFMEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMM-----CREIE 2393
Query: 203 Q-----QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-SVYVDGSFVASASSEQKEIAK 256
Q P+ L ++ + K + + ++ ++ GSF S IAK
Sbjct: 2394 QFSGVVPKSPIRELLEMEPETAKFGKPERLVDGKVRVSVEIFGKGSF--SGVGRNYRIAK 2451
Query: 257 LNAAREALEKL 267
AA+ AL L
Sbjct: 2452 STAAKRALRHL 2462
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 52/91 (57%)
Query: 31 EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLA 90
EM + + +++N+ + ++ +ALT S+ D + +RLE IGD+ L A++ +++
Sbjct: 1943 EMSFSFDFQPDLLNHPGPSPSVILQALTMSNANDGVNLERLETIGDSFLKYAITTFLYCT 2002
Query: 91 YPQLDPGQLSLLRAANISTEKLARVAVKHGF 121
YPQ G+LS LR+ +S L R+ + G
Sbjct: 2003 YPQRHEGKLSYLRSKQVSNLNLYRLGKRKGL 2033
>gi|350399948|ref|XP_003485689.1| PREDICTED: endoribonuclease Dicer-like [Bombus impatiens]
Length = 1490
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 19/193 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E + Y F N+ L +A TH SYT + YQRLEF+GDA L ++NY++ + L+
Sbjct: 1238 IETKLGYRFNNRGYLLQAFTHPSYTPNNMTECYQRLEFLGDAILDFLITNYIYESCGNLN 1297
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV---- 151
PG L+ LR+A ++ A + V+HG + + A L++ ++ F + +E N AV
Sbjct: 1298 PGALTDLRSALVNNITFACLTVRHGLHIALLSYAPKLNNIIERFVK-FQEERNYAVNDEL 1356
Query: 152 -----------YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEE 200
+ PKVL DI ES+ AIY+D + +L +W I ++ +
Sbjct: 1357 LWILLEEDECNMAEHVDVPKVLGDIFESVIGAIYMDSNKNLTVVWNIVYSIMHKEIDEFS 1416
Query: 201 LQQQPQPVTLLFK 213
QP+ +L++
Sbjct: 1417 KNIPKQPIRVLYE 1429
>gi|256087296|ref|XP_002579808.1| dicer-1 [Schistosoma mansoni]
Length = 2174
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 124/273 (45%), Gaps = 40/273 (14%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY---------------------TDSTSYQRLEFIGDA 77
+E+ +NY FK+ LL +A TH SY TD YQRLEF+GDA
Sbjct: 1894 LESSLNYTFKDPSLLIQAFTHPSYHQLRVLSTSNNLSDQSNLMFSTDLDCYQRLEFLGDA 1953
Query: 78 ALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVK 137
L ++ +++ Q PG L+ LR+A ++ A +AV+ G +K+ R S+ L +
Sbjct: 1954 VLDYVITRFLYEDSKQHSPGVLTDLRSALVNNNIFAALAVRIGLHKYFRASSPQLLHTID 2013
Query: 138 EFAEAVSQEDNTAVYGGS----------IKAPKVLADIVESIAAAIYVDIDFDLQKLWMI 187
F + +NT ++ PK L+DI ES+A AI++D +F L +W I
Sbjct: 2014 VFVRKSNNANNTIPTNTGHLTTNRLSDDVEIPKALSDIFESLAGAIFLDSNFSLDTVWQI 2073
Query: 188 FRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNI-ASVYVDGSFVAS 246
F +++ + PV L +L + K + R ++ A V G F
Sbjct: 2074 FYPIMKERIERYTACIPKSPVRQLLELEPEGTKFERARRMVDGRISVCAHVLGKGRFYGV 2133
Query: 247 ASSEQKEIAKLNAAREALEKL------AQSMPV 273
+ + +AK AA+ AL L +Q+ PV
Sbjct: 2134 GRNYR--LAKSLAAKRALRVLRRLNQPSQTTPV 2164
Score = 44.3 bits (103), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
+ALT S D + +R+E IGD+ L ++ +++L YP+ G+LS LR+ + L R
Sbjct: 1639 QALTMSCSNDFINLERMETIGDSFLKFVVTVHLYLTYPEAHEGKLSHLRSRIVCNSNLYR 1698
Query: 115 VA 116
+
Sbjct: 1699 LG 1700
>gi|350423180|ref|XP_003493408.1| PREDICTED: endoribonuclease Dcr-1-like [Bombus impatiens]
Length = 1934
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 116/248 (46%), Gaps = 26/248 (10%)
Query: 20 KEAMLTSLPSPEME-----DAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRL 71
+ +L +P PE E D +E I Y F + L +A TH+SY + YQRL
Sbjct: 1656 QNPLLRYIPDPEQELKMMLDGYEELEKSIGYEFHDISYLLQAFTHASYQPNRLTDCYQRL 1715
Query: 72 EFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAA 131
EF+GDA L ++ +++ Q PG L+ LR+A ++ A +AV+ GF+K+ RH +
Sbjct: 1716 EFLGDAVLDYLITRHLYEDGRQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLSPG 1775
Query: 132 LDDKVKEFAEAVSQEDNTAV-------------YGGSIKAPKVLADIVESIAAAIYVDID 178
L + F + QE+ ++ ++ PK L D+ ES+A AIY+D
Sbjct: 1776 LSIVINRFVR-IQQENGHSISEEYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLDSG 1834
Query: 179 FDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIA 235
L +W ++ +++ + P+ L +L K GK + R+ R +
Sbjct: 1835 MSLDAVWSVYYAIMKNEIEQFSTNVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTV- 1893
Query: 236 SVYVDGSF 243
V+ GSF
Sbjct: 1894 DVFGKGSF 1901
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ +ALT S+ D + +RLE IGD+ L A++ Y++ Y + G+LS LR+ +S
Sbjct: 1401 LILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNLN 1460
Query: 112 LARVA 116
L R+
Sbjct: 1461 LYRLG 1465
>gi|449682783|ref|XP_002165718.2| PREDICTED: endoribonuclease Dicer-like [Hydra magnipapillata]
Length = 1001
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 85/166 (51%), Gaps = 16/166 (9%)
Query: 47 FKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLR 103
F NK L +A TH SY ++ YQ+ EF+GDA L ++ ++ L PGQL+ R
Sbjct: 769 FLNKSHLIQAFTHLSYLSNSVTGCYQQYEFLGDAILDFLITLHIQSNTQNLSPGQLTYFR 828
Query: 104 AANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN----------TAVYG 153
+A ++ +A+KH FYK++ S+ L F E V +
Sbjct: 829 SAVVNNNTFGLLAIKHSFYKYIYSSSNELFSSYNSFIEIVKDDHGLKDEYFESPFVICPT 888
Query: 154 GS---IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV 196
GS +APKVL D+ ES+A AI++D DL +W I+ LL+P++
Sbjct: 889 GSEEGYQAPKVLGDLFESVAGAIFLDSGLDLVTVWKIYYPLLKPVI 934
>gi|158706448|sp|Q0UI93.2|DCL1_PHANO RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease DCL1; Includes: RecName:
Full=ATP-dependent helicase DCL1
Length = 1522
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 118/249 (47%), Gaps = 29/249 (11%)
Query: 45 YNFKNKRLLEEALTHSS----YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
Y F+ RLL A H S + + SYQRLEF+GD+ L +A ++F YP DP L+
Sbjct: 1231 YRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYPDKDPQWLT 1290
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF---AEAVSQEDNTAV-YGGSI 156
+ +S + L V VK G++ ++ + A L +++++ E +E N AV Y S+
Sbjct: 1291 EHKTPMVSNKFLGAVCVKLGWHTHMKQNTAILSSQIRDYVYEVEEAEREANGAVDYWVSV 1350
Query: 157 -KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQ--QPQPVTL 210
+ PK LAD++E+ AAI+VD +FD + F L+P +TL+ + P T
Sbjct: 1351 SEPPKCLADVIEAFVAAIFVDSEFDFNVVQKFFDLHLKPFFLDMTLDAYENFASNHPTTR 1410
Query: 211 LFKLCQKNGKQVDIKHWR------------KNRKNIASVYVDGSFVASASSEQKEIAKLN 258
L +L N WR K + A V + + + A++
Sbjct: 1411 LSRLLSIN---FGCSEWRMGALETETLIPGKGKAIAAMVMIHDKVHFHSLGQSGRYARVR 1467
Query: 259 AAREALEKL 267
A+ ALEKL
Sbjct: 1468 ASHAALEKL 1476
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAV-KHGFYKFV 125
+Y+RLEF+GD L +A S VF+ P+ + + + R + + L AV K YK+V
Sbjct: 1049 NYERLEFLGDCFLKVATSLSVFVQQPEENEFEFHVRRMLMLCNQNLMETAVGKKKLYKYV 1108
Query: 126 RHSA 129
R A
Sbjct: 1109 RTDA 1112
>gi|334283448|gb|AAR82738.2| SD11113p [Drosophila melanogaster]
Length = 1701
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 134/307 (43%), Gaps = 86/307 (28%)
Query: 37 FYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQ 93
+Y+E + Y FK++R L +ALTH SY + SYQ LEFIGDA L +S Y+F +
Sbjct: 1413 YYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTK 1472
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA------------- 140
++PG L+ LR+A ++ LA + V+H + F+ A L + + +F
Sbjct: 1473 MNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNY 1532
Query: 141 ------------------------------EAVSQEDNTAV-------YGGSIKAPKVLA 163
+ +SQE V ++ PK L
Sbjct: 1533 VRILLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALG 1592
Query: 164 DIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ--QPQPVTLLFKLCQKN--- 218
D++E++ AA+Y+D DLQ+ W + L EP ELQ+ + P+ + +L +
Sbjct: 1593 DVLEALIAAVYLDCR-DLQRTWEVIFNLFEP-----ELQEFTRKVPINHIRQLVEHKHAK 1646
Query: 219 ---------GKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
G+ V + + VY GS K+ AKL+AA+ AL++L++
Sbjct: 1647 PVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGS--------NKDQAKLSAAKHALQQLSK 1698
Query: 270 SMPVNCD 276
CD
Sbjct: 1699 -----CD 1700
>gi|283827860|gb|ADB44075.1| dicer-1 [Marsupenaeus japonicus]
Length = 2482
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 120/251 (47%), Gaps = 32/251 (12%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E I Y F+++ L +A TH+SY + YQRLEF+GDA L ++ +++ Q P
Sbjct: 2230 EEKIGYTFQDRSYLLQAFTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKRQHSP 2289
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN-------- 148
G L+ LR+A ++ A +AVK+ ++K+ RH + LD +++F + QE+N
Sbjct: 2290 GALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGLDRVIRDFVKM--QEENGHKINEEY 2347
Query: 149 ------TAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQ 202
I+ PK L D+ ES+A AI++D L +W ++ ++ E++
Sbjct: 2348 YFMEEDECEAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMM-----CREIE 2402
Query: 203 Q-----QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-SVYVDGSFVASASSEQKEIAK 256
Q P+ L ++ + K + + ++ ++ GSF S IAK
Sbjct: 2403 QFSGVVPKSPIRELLEMEPETAKFGKPERLVDGKVRVSVEIFGKGSF--SGVGRNYRIAK 2460
Query: 257 LNAAREALEKL 267
AA+ AL L
Sbjct: 2461 STAAKRALRHL 2471
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 52/91 (57%)
Query: 31 EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLA 90
EM + + +++N+ + ++ +ALT S+ D + +RLE IGD+ L A++ +++
Sbjct: 1952 EMSFSFDFQPDLLNHPGPSPSVILQALTMSNANDGVNLERLETIGDSFLKYAITTFLYCT 2011
Query: 91 YPQLDPGQLSLLRAANISTEKLARVAVKHGF 121
YPQ G+LS LR+ +S L R+ + G
Sbjct: 2012 YPQRHEGKLSYLRSKQVSNLNLYRLGKRKGL 2042
>gi|16215719|dbj|BAB69959.1| double-strand-specific ribonuclease [Drosophila melanogaster]
Length = 1722
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 135/310 (43%), Gaps = 92/310 (29%)
Query: 37 FYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQ 93
+Y+E + Y FK++R L +ALTH SY + SYQ LEFIGDA L +S Y+F +
Sbjct: 1434 YYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTK 1493
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA------------- 140
++PG L+ LR+A ++ LA + V+H + F+ A L + + +F
Sbjct: 1494 MNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNY 1553
Query: 141 ------------------------------EAVSQEDNTAV-------YGGSIKAPKVLA 163
+ +SQE V ++ PK L
Sbjct: 1554 VRILLEEADVQPTPPDLDDELDMTELPHANKCISQEAEKGVPPKGEFSMSTNVDVPKALG 1613
Query: 164 DIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ--QPQPVTLLFKLCQ-KNGK 220
D++E++ AA+Y+D DLQ+ W + L EP ELQ+ + P+ + +L + K+ K
Sbjct: 1614 DVLEALIAAVYLDCR-DLQRTWEVIFNLFEP-----ELQEFTRKVPINHIRQLVEHKHAK 1667
Query: 221 QVDIKHWRKNRKNIASVYVDGSFVASAS--------------SEQKEIAKLNAAREALEK 266
V S V+G V + K+ AKL+AA+ AL++
Sbjct: 1668 PV-----------FGSPIVEGGTVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQ 1716
Query: 267 LAQSMPVNCD 276
L++ CD
Sbjct: 1717 LSK-----CD 1721
>gi|321461347|gb|EFX72380.1| hypothetical protein DAPPUDRAFT_308316 [Daphnia pulex]
Length = 1741
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 117/241 (48%), Gaps = 18/241 (7%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY-----TDSTSYQRLEFIGDAALGLALSNYVFLAYPQL 94
E I Y F ++ L +A +H+SY TD YQRLEF+GDA L ++ Y++ P+
Sbjct: 1494 EEKICYKFNDRSYLLQAFSHASYYLNRLTDC--YQRLEFLGDAVLDYLITRYLYENLPRH 1551
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNT----- 149
PG L+ LR+A ++ A +A ++ F+++ +H + +L+ + +F +A QE+N
Sbjct: 1552 PPGALTDLRSALVNNTTFAVLAERYEFHRYFKHLSPSLNQIMDKFIKA--QEENGHSINE 1609
Query: 150 ---AVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQ 206
+ ++ PKVL D+ ES+A AIY+D L +W ++ +++ +
Sbjct: 1610 EYYMIEAEDVEVPKVLGDVFESVAGAIYLDSHMSLNAVWRVYYNMMKKEIDEFSKNVPKS 1669
Query: 207 PVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEK 266
P+ L +L K + R + +V V G IAK AA+ AL
Sbjct: 1670 PIRELLELETDRVKFGKAERLPDGRLRV-TVDVIGKGTFKGIGRNYRIAKCTAAKYALRT 1728
Query: 267 L 267
L
Sbjct: 1729 L 1729
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
+A T SS D + +RLE IGD+ L A++ Y++ Y + G+LS LR+ +S L +
Sbjct: 1244 QAFTMSSANDGINLERLETIGDSFLKYAITTYLYCKYSSIHEGELSHLRSRQVSNLHLYQ 1303
Query: 115 VAVKHGF 121
+ K F
Sbjct: 1304 LGKKKLF 1310
>gi|393220706|gb|EJD06192.1| hypothetical protein FOMMEDRAFT_145449 [Fomitiporia mediterranea
MF3/22]
Length = 1473
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 117/239 (48%), Gaps = 14/239 (5%)
Query: 43 INYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQL 99
+ Y F+N +LL EA+ H S+ + YQRLEF+GDA + L ++ Y++ +P + GQ+
Sbjct: 1137 LQYTFRNGKLLVEAVKHPSFDFLENYPCYQRLEFLGDAVIELVVTTYLYNKFPGANSGQM 1196
Query: 100 SLLRAANISTEKLARVAVKH-GFYKFVRHSAAALDDKVK---EFAEAVSQEDNTAVYGGS 155
S RA I LA +AV +K++ + L + V E A S ED ++
Sbjct: 1197 SWARARAICNTTLAALAVNRLSLHKYLLANCVELSEDVAKEVEILSAASYED-VSLNDWR 1255
Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLC 215
PKVL DI ES+ A++VD FD I L++ ++ L PV+ L +
Sbjct: 1256 YDPPKVLGDIFESVIGAVFVDSGFDYTITAPIIEELMKDVLVLLHPDIPYDPVSRLLQWV 1315
Query: 216 QKNGK-----QVDIKHWRKNRKNIASVYVDGSFVASA-SSEQKEIAKLNAAREALEKLA 268
K+G Q + R NRK+ V + VA ++ K +AK A +A++ LA
Sbjct: 1316 AKSGCMRAKFQRTQTNPRVNRKDGVVVLIHDRIVAGPITAANKPLAKGLVAEKAMQVLA 1374
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
N + Y L+ EALT S + QRLE +GD+ L L++ Y+F A+P GQL+
Sbjct: 951 NFLKYPPIPDNLIVEALTLPSAMAGFNNQRLETMGDSVLKLSVVVYIFNAFPNRHEGQLT 1010
Query: 101 LLRAANISTEKL 112
L+ ++S L
Sbjct: 1011 ALKENSVSNRLL 1022
>gi|340386816|ref|XP_003391904.1| PREDICTED: endoribonuclease Dicer-like, partial [Amphimedon
queenslandica]
Length = 380
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 113/221 (51%), Gaps = 40/221 (18%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSY--TDSTS-YQRLEFIGDAALGLALSNYVFLAYP 92
V ++ I Y+FKN+ LL EA+THSSY D T YQRLEF+GDA L ++ +++ +
Sbjct: 119 VSSIQGKIEYSFKNELLLIEAMTHSSYHRNDITGCYQRLEFLGDAILDYLVTCHIYQSDS 178
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ------- 145
+PG+++ LR+A + + A +A+ ++ + H + L + +K++A+++ Q
Sbjct: 179 SAEPGRMTELRSALVCNSRFAELAISLNLHRSLCHGSPNLFNDMKKYAQSLKQREKEDRE 238
Query: 146 ----------EDNTAVYGGSIKA----------------PKVLADIVESIAAAIYVDIDF 179
+D+ V S++ PK L+D E++A A+++D
Sbjct: 239 RKLEEMSINDDDSAQVIVESMEDGDIDDDEDEDDDIIEPPKSLSDCFEALAGAVFIDSGM 298
Query: 180 DLQKLWMIFRGLLEPIVTLEELQQQP--QPVTLLFKLCQKN 218
+LQ +W F LEP+ E+ + P P+ L KL K+
Sbjct: 299 NLQTVWETFSPFLEPL--FEKFKNDPPLTPICELHKLIPKD 337
>gi|302819687|ref|XP_002991513.1| hypothetical protein SELMODRAFT_429800 [Selaginella moellendorffii]
gi|300140715|gb|EFJ07435.1| hypothetical protein SELMODRAFT_429800 [Selaginella moellendorffii]
Length = 850
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 122/256 (47%), Gaps = 42/256 (16%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAA-----NIST 109
EA+T + SY+ LE +GD+ L ++ +FL Y + GQLS R +I
Sbjct: 573 EAITSKKCHEEFSYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRNTYATKNSILP 632
Query: 110 EKLARV------------AVKHGF-YKF---------------------VRHSAAALDDK 135
LAR +++H YKF +H + LD +
Sbjct: 633 TGLARACLPLIHQNASLESLEHKLQYKFQNRSLLVEAITHASQPNCLLCYQHGSVELDCE 692
Query: 136 VKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195
+++F + V ++ + + + + +PKVL D++ESI AI+VD +FDL+KLW + LL P+
Sbjct: 693 IRKFVQNVKEKPDASCFD-DLSSPKVLGDLLESITGAIFVDTNFDLEKLWRVVLPLLSPL 751
Query: 196 VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIA 255
VT L+ PV +L +LC + G +V + + + S V ++ + ++ A
Sbjct: 752 VTPATLRF--HPVRILMELCARKGMKVSFFRTEATTTEVRVTFGEESLVETSQEKPRKSA 809
Query: 256 KLNAAREALEKLAQSM 271
K++AA + L L + +
Sbjct: 810 KIDAALKMLASLQEKV 825
>gi|22026807|ref|NP_523778.2| Dicer-2 [Drosophila melanogaster]
gi|21627058|gb|AAF57830.2| Dicer-2 [Drosophila melanogaster]
gi|342672109|gb|AEL30809.1| FI15132p1 [Drosophila melanogaster]
Length = 1722
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 135/299 (45%), Gaps = 70/299 (23%)
Query: 37 FYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQ 93
+Y+E + Y FK++R L +ALTH SY + SYQ LEFIGDA L +S Y+F +
Sbjct: 1434 YYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTK 1493
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA------------- 140
++PG L+ LR+A ++ LA + V+H + F+ A L + + +F
Sbjct: 1494 MNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNY 1553
Query: 141 ------------------------------EAVSQEDNTAV-------YGGSIKAPKVLA 163
+ +SQE V ++ PK L
Sbjct: 1554 VRILLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALG 1613
Query: 164 DIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ--QPQPVTLLFKLCQ-KNGK 220
D++E++ AA+Y+D DLQ+ W + L EP ELQ+ + P+ + +L + K+ K
Sbjct: 1614 DVLEALIAAVYLDCR-DLQRTWEVIFNLFEP-----ELQEFTRKVPINHIRQLVEHKHAK 1667
Query: 221 QVDIKHWRKNRKNIAS---VYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD 276
V + + S ++ + K+ AKL+AA+ AL++L++ CD
Sbjct: 1668 PVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK-----CD 1721
>gi|80979087|gb|ABB54746.1| Dicer-2 [Drosophila melanogaster]
Length = 1715
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 135/299 (45%), Gaps = 70/299 (23%)
Query: 37 FYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQ 93
+Y+E + Y FK++R L +ALTH SY + SYQ LEFIGDA L +S Y+F +
Sbjct: 1427 YYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTK 1486
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA------------- 140
++PG L+ LR+A ++ LA + V+H + F+ A L + + +F
Sbjct: 1487 MNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNY 1546
Query: 141 ------------------------------EAVSQEDNTAV-------YGGSIKAPKVLA 163
+ +SQE V ++ PK L
Sbjct: 1547 VRILLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALG 1606
Query: 164 DIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ--QPQPVTLLFKLCQ-KNGK 220
D++E++ AA+Y+D DLQ+ W + L EP ELQ+ + P+ + +L + K+ K
Sbjct: 1607 DVLEALIAAVYLDCR-DLQRTWEVIFNLFEP-----ELQEFTRKVPINHIRQLVEHKHAK 1660
Query: 221 QVDIKHWRKNRKNIAS---VYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD 276
V + + S ++ + K+ AKL+AA+ AL++L++ CD
Sbjct: 1661 PVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK-----CD 1714
>gi|336373452|gb|EGO01790.1| hypothetical protein SERLA73DRAFT_85682 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1354
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 20/201 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
VE II + F LL +ALTH+S ST Y+RLEFIGDA L + ++F ++ P
Sbjct: 1051 VETIIGHKFAYPHLLAQALTHASVQGYQSTCYERLEFIGDAILEFMVIRHIFNRDDKMSP 1110
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVK------------EFAEAVS 144
G L+L++ A +S LA V V G ++ + + + L ++ E+ A
Sbjct: 1111 GVLTLMKGAMVSNSALAAVCVWSGLHEHILYESFPLAGNIQGYIDELKKKQTEEYELAAR 1170
Query: 145 QEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI----VTLEE 200
++ + ++ PK L+D+VESI AIY+ F ++F +L+P +TL+
Sbjct: 1171 EQRTPGQFWLDVEPPKALSDVVESIIGAIYISDGFQPIGSELVFNNILKPFYNKHITLKT 1230
Query: 201 LQQQPQPVTLLFKLCQKNGKQ 221
L P V L +L + +G Q
Sbjct: 1231 LSHHPTKVIL--ELLEAHGCQ 1249
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 6 FTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS 65
T+P +T L+ A+L S ++D + E +N F N + EE L + T S
Sbjct: 775 LTIPAST------LRTALLLPSISRRIDDILIVKE--LNAKFFNHHITEELLLAAISTPS 826
Query: 66 TS----YQRLEFI-GDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHG 120
Y+RLE + GDA L S YVF+ P + G L + R IS + L + A G
Sbjct: 827 AGFDYDYERLEVLAGDAFLKYLSSIYVFVTNPAKNEGALHVSRQQIISNKALLKTACTVG 886
Query: 121 FYKFVR 126
F++
Sbjct: 887 LPPFIQ 892
>gi|336386278|gb|EGO27424.1| hypothetical protein SERLADRAFT_446652 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1267
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 20/201 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
VE II + F LL +ALTH+S ST Y+RLEFIGDA L + ++F ++ P
Sbjct: 956 VETIIGHKFAYPHLLAQALTHASVQGYQSTCYERLEFIGDAILEFMVIRHIFNRDDKMSP 1015
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVK------------EFAEAVS 144
G L+L++ A +S LA V V G ++ + + + L ++ E+ A
Sbjct: 1016 GVLTLMKGAMVSNSALAAVCVWSGLHEHILYESFPLAGNIQGYIDELKKKQTEEYELAAR 1075
Query: 145 QEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI----VTLEE 200
++ + ++ PK L+D+VESI AIY+ F ++F +L+P +TL+
Sbjct: 1076 EQRTPGQFWLDVEPPKALSDVVESIIGAIYISDGFQPIGSELVFNNILKPFYNKHITLKT 1135
Query: 201 LQQQPQPVTLLFKLCQKNGKQ 221
L P V L +L + +G Q
Sbjct: 1136 LSHHPTKVIL--ELLEAHGCQ 1154
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 12/125 (9%)
Query: 6 FTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS 65
T+P +T L+ A+L S ++D + E +N F N + EE L + T S
Sbjct: 681 LTIPAST------LRTALLLPSISRRIDDILIVKE--LNAKFFNHHITEELLLAAISTPS 732
Query: 66 TS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGF 121
Y+RLE +GDA L S YVF+ P + G L + R IS + L + A G
Sbjct: 733 AGFDYDYERLEVLGDAFLKYLSSIYVFVTNPAKNEGALHVSRQQIISNKALLKTACTVGL 792
Query: 122 YKFVR 126
F++
Sbjct: 793 PPFIQ 797
>gi|321458470|gb|EFX69538.1| hypothetical protein DAPPUDRAFT_329028 [Daphnia pulex]
Length = 1597
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 117/246 (47%), Gaps = 16/246 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVF-LAYPQL 94
+E +N+ F N+ L +A +H+SY ++ YQRLEF+GDA ++ Y++ QL
Sbjct: 1351 LERSLNFRFGNRFYLLQAFSHASYHHNRMTSCYQRLEFLGDAVFDYLITKYLYDCRLFQL 1410
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV--- 151
PG LS +R+A ++ A +AV++GF+++++H + + F + D+
Sbjct: 1411 TPGALSDMRSALVNNVTFAVLAVRNGFHRYLKHLVPDVHQAIDRFVQQQEMCDHATPDEF 1470
Query: 152 ---------YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQ 202
+++ PKVL DI ES+ A+++D D L +W +F L+ +
Sbjct: 1471 FLIGTHDDPMAEAVEVPKVLGDIFESLVGAVFLDSDMSLDAVWRVFYPLIRQEIEACTRV 1530
Query: 203 QQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262
P+ +++ + +++ R IA ++ + + IAK AA+
Sbjct: 1531 VPKSPIRTIYEKYPGKVQFKTLENLPDGRICIAVEVLNNGRLYKGVGKNSRIAKNTAAKY 1590
Query: 263 ALEKLA 268
AL +L
Sbjct: 1591 ALSQLG 1596
>gi|302819689|ref|XP_002991514.1| hypothetical protein SELMODRAFT_429802 [Selaginella moellendorffii]
gi|300140716|gb|EFJ07436.1| hypothetical protein SELMODRAFT_429802 [Selaginella moellendorffii]
Length = 569
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 120/252 (47%), Gaps = 42/252 (16%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAA-----NIST 109
EA+T + SY+ LE +GD+ L ++ +FL Y + GQLS R +I
Sbjct: 311 EAITSKKCHEEFSYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRNTYATKNSILP 370
Query: 110 EKLARV------------AVKHGF-YKF---------------------VRHSAAALDDK 135
LAR +++H YKF +H + LD +
Sbjct: 371 TGLARACLPLIHQNASLESLEHKLQYKFQNRSLLVEAITHASQPNCLLCYQHGSVELDCE 430
Query: 136 VKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195
+++F + V ++ + + + + APKVL D++ESI AI+VD +FDL+KLW + LL P+
Sbjct: 431 IRKFVQNVKEKPDASCFE-DLSAPKVLGDLLESITGAIFVDTNFDLEKLWRVVLPLLSPL 489
Query: 196 VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIA 255
VT L+ PV +L +LC + G +V + + + S V ++ + ++ A
Sbjct: 490 VTPGTLRF--HPVRILMELCARQGMKVSFFRTEATTTEVRVTFGEESLVETSQEKPRKSA 547
Query: 256 KLNAAREALEKL 267
K++AA + L L
Sbjct: 548 KIDAALKMLASL 559
>gi|195424855|gb|ACF96960.1| dicer-1 [Litopenaeus vannamei]
Length = 2473
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 22/246 (8%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E I Y F+++ L +A TH+SY + YQRLEF+GDA L ++ +++ Q P
Sbjct: 2221 EEKIGYTFRDRSYLLQASTHASYYKNRLTDCYQRLEFLGDAVLDYLITRHLYEDKRQHSP 2280
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN-------- 148
G L+ LR+A ++ A +AVK+ ++K+ RH + D +++F + QE+N
Sbjct: 2281 GALTDLRSALVNNTIFASLAVKYDYHKYFRHFSPGPDRVIRDFVKM--QEENGHKINEEY 2338
Query: 149 ------TAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQ 202
I+ PK L D+ ES+A AI++D L +W ++ ++ P +
Sbjct: 2339 YFMEEDEREAAEDIEVPKALGDVFESVAGAIFLDSGSSLDAVWSVYYTMMCPEIERFSGV 2398
Query: 203 QQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-SVYVDGSFVASASSEQKEIAKLNAAR 261
P+ L ++ + K + + ++ ++ GSF S IAK AA+
Sbjct: 2399 VPKSPIRELLEMEPETAKFGKPERLVDGKVRVSVEIFGKGSF--SGVGRNYRIAKSTAAK 2456
Query: 262 EALEKL 267
AL L
Sbjct: 2457 RALRHL 2462
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 52/91 (57%)
Query: 31 EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLA 90
EM + + +++N+ + ++ +ALT S+ D + +RLE IGD+ L A++ +++
Sbjct: 1943 EMSFSFDFQPDLLNHPGPSPSVILQALTMSNANDGVNLERLETIGDSFLKYAITTFLYCT 2002
Query: 91 YPQLDPGQLSLLRAANISTEKLARVAVKHGF 121
YPQ G+LS LR+ +S L R+ + G
Sbjct: 2003 YPQRHEGKLSYLRSKQVSNLNLYRLGKRKGL 2033
>gi|198421916|ref|XP_002122382.1| PREDICTED: similar to rCG20888 [Ciona intestinalis]
Length = 2053
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 115/258 (44%), Gaps = 31/258 (12%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ ++F P
Sbjct: 1791 ERKINYTFKNKAYLLQAFTHASYYYNTVTDCYQRLEFLGDAVLDFLITRHLFNDERHHSP 1850
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF--------------AEA 142
G L+ LR+A ++ A +AV + F+K+ + + L +++F A
Sbjct: 1851 GALTDLRSALVNNTIFASLAVHYDFHKYFKSISPELHHIIEDFVMYQQKQEDAQGMDAHL 1910
Query: 143 VSQEDNTAVYGGS-------------IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFR 189
+ D + S ++ PK L DI ES+A AIY+D DL +W ++
Sbjct: 1911 MRDYDRVEIVAPSSLEKDEEEGENEDVEVPKALGDIFESVAGAIYMDSGMDLSSVWKVYS 1970
Query: 190 GLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASS 249
++ P++ PV L ++ + K R + K +V + G
Sbjct: 1971 VMMLPLIEKFSACVPRSPVRELLEMEPETAK-FSCAEKRYDGKVRVTVEIIGKGRFKGVG 2029
Query: 250 EQKEIAKLNAAREALEKL 267
IAK AAR AL L
Sbjct: 2030 RSYRIAKSAAARRALRYL 2047
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ +ALT S+ +D + +RLE +GD+ L A++ Y++ YP+ G+LS +R+ +S
Sbjct: 1460 LILQALTLSNASDGFNLERLEMLGDSFLKHAVTVYLYCTYPESHEGKLSYMRSKKVSNYN 1519
Query: 112 LARVAVKHGF 121
L R+ + G
Sbjct: 1520 LYRIGKQFGL 1529
>gi|168177333|pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
Dicer
Length = 265
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 17/244 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 19 EKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPRQHSP 78
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 79 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSEL 138
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ +++P++
Sbjct: 139 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANV 198
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 199 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 257
Query: 264 LEKL 267
L L
Sbjct: 258 LRSL 261
>gi|425626934|gb|AFX89025.1| DCR2 [Mayetiola destructor]
Length = 1646
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 95/173 (54%), Gaps = 18/173 (10%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E I Y FK++ L +ALTH +Y + YQ+LEF+GDA L +++Y++ P++D
Sbjct: 1397 LETNIGYKFKDRAYLLQALTHPTYPTNRVTGCYQQLEFLGDAVLDFLITSYIYERCPEMD 1456
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE-------------- 141
PG+L+ LR+A ++ LA + V++ + ++ AAL + + +F +
Sbjct: 1457 PGKLTDLRSALVNNVTLACICVRYNIHLYILSQNAALTEFISQFVDYQIAHNHEVTDHVD 1516
Query: 142 -AVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLE 193
+ ++D ++ PK L D++E++ AI++D +L+ W + GL++
Sbjct: 1517 LLMEEKDVECKMAEYVEVPKTLGDVIEALIGAIFLDSGNNLEVTWKVIYGLMQ 1569
>gi|47210543|emb|CAF93935.1| unnamed protein product [Tetraodon nigroviridis]
Length = 479
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E I+Y F+NK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 227 ERKISYTFQNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 286
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 287 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSEL 346
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 347 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 406
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 407 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 465
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 466 LRSLKANQP 474
>gi|313673188|ref|YP_004051299.1| rnase iii [Calditerrivibrio nitroreducens DSM 19672]
gi|312939944|gb|ADR19136.1| RNAse III [Calditerrivibrio nitroreducens DSM 19672]
Length = 229
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 120/245 (48%), Gaps = 40/245 (16%)
Query: 42 IINYNFKNKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
I+NYNF+NK LL EALTHSSY+ +Y+RLEF+GDA L L +S Y+ Y D G
Sbjct: 9 ILNYNFENKELLIEALTHSSYSYENKLCRNYERLEFLGDAVLQLIVSEYLIFKYKDFDEG 68
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157
LS RA +S E ++ +A + F+R L+ G
Sbjct: 69 MLSRYRAYFVSEEFISELAKQIDLGNFIRLGKGELN-------------------SGGKD 109
Query: 158 APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT--LEELQQQ---PQPVTLLF 212
P +L DI ESI AA+Y+D ++ + ++I I + ++E+ QQ + L
Sbjct: 110 RPSILCDIFESIVAAMYLDGGYNEARRFII------TIASDKIDEVIQQNIFTDYKSELQ 163
Query: 213 KLCQK------NGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEK 266
KL QK + K D ++ I +Y++ + S S + K+ A+ +AA++A
Sbjct: 164 KLTQKIFESLPDYKVKDETGPEHDKTFIVDLYINDRYYCSGSGKSKKKAEQDAAKKAFLM 223
Query: 267 LAQSM 271
L++ +
Sbjct: 224 LSEHI 228
>gi|312069719|ref|XP_003137813.1| hypothetical protein LOAG_02227 [Loa loa]
gi|307767024|gb|EFO26258.1| hypothetical protein LOAG_02227 [Loa loa]
Length = 1928
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 118/252 (46%), Gaps = 25/252 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E+ I Y F ++ L +A TH+SY + YQRLEF+GDA L ++ ++F
Sbjct: 1665 LEDFIGYRFNDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQHSSHYS 1724
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED------NT 149
PG L+ LR+A ++ A +A+KH F+K L +++F ++++ N
Sbjct: 1725 PGVLTDLRSALVNNTIFASLAIKHNFHKHFIAMCPRLHHMIEKFVCLCTEKNLSSANFNE 1784
Query: 150 AVYGGSI------------KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT 197
+Y + + PK + DI ES+A AIY+D L +W +F L++ T
Sbjct: 1785 EMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLDIVWRVFYNLMKE--T 1842
Query: 198 LEELQQQP--QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIA 255
++E P P+ L ++ + + ++ + K +V + G + IA
Sbjct: 1843 IDECCSNPPRSPIRELLEMEPERARFSKLERILETGKVRVTVDIQGKCRFTGMGRSYRIA 1902
Query: 256 KLNAAREALEKL 267
K AA+ AL L
Sbjct: 1903 KCTAAKRALRYL 1914
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 53 LEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKL 112
L +ALT S+ +D + +RLE +GD+ L A+++Y+F P+ G+LS R+ +S L
Sbjct: 1412 LLQALTLSNASDGINLERLETVGDSFLKYAVTDYLFHTNPEQHEGKLSFARSKEVSNCNL 1471
Query: 113 ARVAVKHGFYKFV 125
R+ KH +
Sbjct: 1472 YRLGRKHNLPSLI 1484
>gi|306819680|ref|ZP_07453341.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715]
gi|304552246|gb|EFM40176.1| ribonuclease III [Eubacterium yurii subsp. margaretiae ATCC 43715]
Length = 233
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 116/244 (47%), Gaps = 42/244 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
VEN I Y FKNK L+ ALTHSSY + + +RLEF+GD+ LGL +SNY+F L
Sbjct: 12 VENTIGYKFKNKNYLQIALTHSSYVNEHKLTKDNERLEFLGDSVLGLIVSNYIFAYKSSL 71
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
G+L+ +R+ + + L +A K ++++ E +S G
Sbjct: 72 KEGELTKIRSTIVCEKSLMHIAEKLKIGQYIKLGK----------GEKIS---------G 112
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFD------LQKLWMIFRGLLEPIVTLE---ELQQQP 205
K +LAD VE++ AAIY+D DFD L L + L+ + +LQ++
Sbjct: 113 GAKRASILADAVEAMIAAIYLDSDFDNVSKYVLDWLGDTIKNALDNKKNDDYKSKLQEEV 172
Query: 206 QPV---TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262
Q V TL ++L G + R VY D + + K+ A+ AA++
Sbjct: 173 QKVRGRTLKYELIAMKGPDHE-------RTFTIGVYCDNKLIGTGKGHSKKEAEQLAAKD 225
Query: 263 ALEK 266
ALEK
Sbjct: 226 ALEK 229
>gi|344995859|ref|YP_004798202.1| ribonuclease 3 [Caldicellulosiruptor lactoaceticus 6A]
gi|343964078|gb|AEM73225.1| Ribonuclease 3 [Caldicellulosiruptor lactoaceticus 6A]
Length = 222
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 129/247 (52%), Gaps = 47/247 (19%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E + Y FK+K LL ALTH S T S Y+RLEF+GDAAL LA+S Y+F+ +P+L
Sbjct: 4 IERALGYTFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPELSE 63
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ +RAA + ++ L++VA K H +K+++F E S
Sbjct: 64 GELTNIRAAVVCSQTLSKVAEK---LNLKNHIIFGKREKMEKFHENKS------------ 108
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT--------------LEELQ 202
+LAD++E+I AI+++ FD+ + I LL+P + L+E+
Sbjct: 109 ----ILADVLEAIFGAIFIESGFDI--VEKIIVNLLKPYIQKAVTGKLFYDYKTKLQEIV 162
Query: 203 QQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262
Q+ +++K C+ ++ K+++ + ++++G V+ K+ A+ +AA +
Sbjct: 163 QREGNKKIVYKDCE----IIEKKYFK------SELFIEGKKVSEGYGTSKKEAQQDAAYK 212
Query: 263 ALEKLAQ 269
L ++ +
Sbjct: 213 FLLEMGE 219
>gi|80979097|gb|ABB54751.1| Dicer-2 [Drosophila melanogaster]
Length = 1715
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 134/298 (44%), Gaps = 70/298 (23%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
Y+E + Y FK++R L +ALTH SY + SYQ LEFIGDA L +S Y+F ++
Sbjct: 1428 YLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKM 1487
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA-------------- 140
+PG L+ LR+A ++ LA + V+H + F+ A L + + +F
Sbjct: 1488 NPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYV 1547
Query: 141 -----------------------------EAVSQEDNTAV-------YGGSIKAPKVLAD 164
+ +SQE V ++ PK L D
Sbjct: 1548 RILLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGD 1607
Query: 165 IVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ--QPQPVTLLFKLCQ-KNGKQ 221
++E++ AA+Y+D DLQ+ W + L EP ELQ+ + P+ + +L + K+ K
Sbjct: 1608 VLEALIAAVYLDCR-DLQRTWEVIFNLFEP-----ELQEFTRKVPINHIRQLVEHKHAKP 1661
Query: 222 VDIKHWRKNRKNIAS---VYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD 276
V + + S ++ + K+ AKL+AA+ AL++L++ CD
Sbjct: 1662 VFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK-----CD 1714
>gi|80979093|gb|ABB54749.1| Dicer-2 [Drosophila melanogaster]
Length = 1715
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 134/298 (44%), Gaps = 70/298 (23%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
Y+E + Y FK++R L +ALTH SY + SYQ LEFIGDA L +S Y+F ++
Sbjct: 1428 YLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKM 1487
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA-------------- 140
+PG L+ LR+A ++ LA + V+H + F+ A L + + +F
Sbjct: 1488 NPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYV 1547
Query: 141 -----------------------------EAVSQEDNTAV-------YGGSIKAPKVLAD 164
+ +SQE V ++ PK L D
Sbjct: 1548 RILLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGD 1607
Query: 165 IVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ--QPQPVTLLFKLCQ-KNGKQ 221
++E++ AA+Y+D DLQ+ W + L EP ELQ+ + P+ + +L + K+ K
Sbjct: 1608 VLEALIAAVYLDCR-DLQRTWEVIFNLFEP-----ELQEFTRKVPINHIRQLVEHKHAKP 1661
Query: 222 VDIKHWRKNRKNIAS---VYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD 276
V + + S ++ + K+ AKL+AA+ AL++L++ CD
Sbjct: 1662 VFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK-----CD 1714
>gi|80979085|gb|ABB54745.1| Dicer-2 [Drosophila melanogaster]
Length = 1715
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 134/298 (44%), Gaps = 70/298 (23%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
Y+E + Y FK++R L +ALTH SY + SYQ LEFIGDA L +S Y+F ++
Sbjct: 1428 YLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKM 1487
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA-------------- 140
+PG L+ LR+A ++ LA + V+H + F+ A L + + +F
Sbjct: 1488 NPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYV 1547
Query: 141 -----------------------------EAVSQEDNTAV-------YGGSIKAPKVLAD 164
+ +SQE V ++ PK L D
Sbjct: 1548 RILLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGD 1607
Query: 165 IVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ--QPQPVTLLFKLCQ-KNGKQ 221
++E++ AA+Y+D DLQ+ W + L EP ELQ+ + P+ + +L + K+ K
Sbjct: 1608 VLEALIAAVYLDCR-DLQRTWEVIFNLFEP-----ELQEFTRKVPINHIRQLVEHKHAKP 1661
Query: 222 VDIKHWRKNRKNIAS---VYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD 276
V + + S ++ + K+ AKL+AA+ AL++L++ CD
Sbjct: 1662 VFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK-----CD 1714
>gi|80979099|gb|ABB54752.1| Dicer-2 [Drosophila melanogaster]
Length = 1715
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 134/298 (44%), Gaps = 70/298 (23%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
Y+E + Y FK++R L +ALTH SY + SYQ LEFIGDA L +S Y+F ++
Sbjct: 1428 YLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKM 1487
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA-------------- 140
+PG L+ LR+A ++ LA + V+H + F+ A L + + +F
Sbjct: 1488 NPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYV 1547
Query: 141 -----------------------------EAVSQEDNTAV-------YGGSIKAPKVLAD 164
+ +SQE V ++ PK L D
Sbjct: 1548 RILLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGD 1607
Query: 165 IVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ--QPQPVTLLFKLCQ-KNGKQ 221
++E++ AA+Y+D DLQ+ W + L EP ELQ+ + P+ + +L + K+ K
Sbjct: 1608 VLEALIAAVYLDCR-DLQRTWEVIFNLFEP-----ELQEFTRKVPINHIRQLVEHKHAKP 1661
Query: 222 VDIKHWRKNRKNIAS---VYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD 276
V + + S ++ + K+ AKL+AA+ AL++L++ CD
Sbjct: 1662 VFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK-----CD 1714
>gi|80979089|gb|ABB54747.1| Dicer-2 [Drosophila melanogaster]
Length = 1715
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 134/298 (44%), Gaps = 70/298 (23%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
Y+E + Y FK++R L +ALTH SY + SYQ LEFIGDA L +S Y+F ++
Sbjct: 1428 YLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKM 1487
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA-------------- 140
+PG L+ LR+A ++ LA + V+H + F+ A L + + +F
Sbjct: 1488 NPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYV 1547
Query: 141 -----------------------------EAVSQEDNTAV-------YGGSIKAPKVLAD 164
+ +SQE V ++ PK L D
Sbjct: 1548 RILLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGD 1607
Query: 165 IVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ--QPQPVTLLFKLCQ-KNGKQ 221
++E++ AA+Y+D DLQ+ W + L EP ELQ+ + P+ + +L + K+ K
Sbjct: 1608 VLEALIAAVYLDCR-DLQRTWEVIFNLFEP-----ELQEFTRKVPINHIRQLVEHKHAKP 1661
Query: 222 VDIKHWRKNRKNIAS---VYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD 276
V + + S ++ + K+ AKL+AA+ AL++L++ CD
Sbjct: 1662 VFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK-----CD 1714
>gi|80979091|gb|ABB54748.1| Dicer-2 [Drosophila melanogaster]
Length = 1715
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 134/298 (44%), Gaps = 70/298 (23%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
Y+E + Y FK++R L +ALTH SY + SYQ LEFIGDA L +S Y+F ++
Sbjct: 1428 YLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKM 1487
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA-------------- 140
+PG L+ LR+A ++ LA + V+H + F+ A L + + +F
Sbjct: 1488 NPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYV 1547
Query: 141 -----------------------------EAVSQEDNTAV-------YGGSIKAPKVLAD 164
+ +SQE V ++ PK L D
Sbjct: 1548 RILLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGD 1607
Query: 165 IVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ--QPQPVTLLFKLCQ-KNGKQ 221
++E++ AA+Y+D DLQ+ W + L EP ELQ+ + P+ + +L + K+ K
Sbjct: 1608 VLEALIAAVYLDCR-DLQRTWEVIFNLFEP-----ELQEFTRKVPINHIRQLVEHKHAKP 1661
Query: 222 VDIKHWRKNRKNIAS---VYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD 276
V + + S ++ + K+ AKL+AA+ AL++L++ CD
Sbjct: 1662 VFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQLSK-----CD 1714
>gi|268576156|ref|XP_002643058.1| C. briggsae CBR-DCR-1 protein [Caenorhabditis briggsae]
Length = 1863
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 116/253 (45%), Gaps = 24/253 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E I Y FK++ L +A TH+SY + + YQRLEF+GDA L ++ Y+F Q
Sbjct: 1600 LEEKIGYRFKDRAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDVRQYS 1659
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED-----NTA 150
PG L+ LR+A ++ A +AVK F K L +++F + NT
Sbjct: 1660 PGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCGDRSFDTNFNTE 1719
Query: 151 VY------------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTL 198
+Y ++ PK L D+ ES+A AIY+D +L W + L++ T+
Sbjct: 1720 MYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVIYHLMKG--TI 1777
Query: 199 EELQQQP--QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK 256
E P P+ L +L + ++ ++ K +V V + + IAK
Sbjct: 1778 ETCCANPPRSPIRELMELEGTKARFSKMERILESGKVRVTVDVGNNMRFTGMGRNYRIAK 1837
Query: 257 LNAAREALEKLAQ 269
AA+ AL+ L Q
Sbjct: 1838 ATAAKRALKYLHQ 1850
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
LL ALT S+ +D S +R E IGD+ L A ++Y++ + G+LS R+ +S
Sbjct: 1350 LLLTALTTSNASDGMSLERFETIGDSFLKFATTDYLYHTLQEQHEGKLSWARSKEVSNCN 1409
Query: 112 LARVAVKHGFYKFV 125
L R+ K G + +
Sbjct: 1410 LYRLGKKLGIPQLI 1423
>gi|328905041|gb|AEB54796.1| dicer 2 [Litopenaeus vannamei]
Length = 1502
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 118/243 (48%), Gaps = 16/243 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E I Y F+++ + +A+THSSY + + YQRLEF+GDA L ++ ++F +
Sbjct: 1242 LEKKIGYTFRDRSFIVQAVTHSSYVNNQVTDCYQRLEFLGDAVLDYLVTCHIFCRFTDYS 1301
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF---------AEAVSQE 146
PGQLS LR+ + + L R A K ++ + H L+ + +F E ++ E
Sbjct: 1302 PGQLSDLRSYFVKNDTLGRAAAKGKLHQHLLHLNPKLEASIDKFLSILHQDPLGEELNTE 1361
Query: 147 DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQ 206
D+ ++ PK L D+VE+I A+Y+D + L+ W + +L ++ Q
Sbjct: 1362 DDVQD-CEDVEIPKALGDMVEAIIGAVYLDSNRSLKVAWQVIERILGDLLNTSIQTIQLN 1420
Query: 207 PVTLLFKLCQKNGKQVDIKHWRKN--RKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 264
P+ L + KQV+ + K+ V V G +AS + +AK A AL
Sbjct: 1421 PIRQLLEEVPGE-KQVEFVKGEDDGSEKSTYVVKVKGFGTFTASGKNYRVAKKKVAAIAL 1479
Query: 265 EKL 267
+++
Sbjct: 1480 KEI 1482
>gi|328696732|ref|XP_001945890.2| PREDICTED: endoribonuclease dcr-1-like isoform 1 [Acyrthosiphon
pisum]
Length = 1691
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 98/196 (50%), Gaps = 28/196 (14%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD--STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E I Y+FK+K LL +ALTH +Y S YQRLEF+GDA L ++ Y+ P
Sbjct: 1437 LERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYHKTP 1496
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE-------AVSQE--- 146
G+++ +R++ ++ A ++ + G ++F+ + + + + F E + QE
Sbjct: 1497 GEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQEVLY 1556
Query: 147 --DNTAVYGG-SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLE---------- 193
+ + Y S+ PKVL D+ ES+ AAIY+D + DL +W I LE
Sbjct: 1557 LIEESDCYAAESVDVPKVLGDLFESLIAAIYLDCNRDLNFVWAICYRFLEKEIKEFCDNV 1616
Query: 194 ---PIVTLEELQQQPQ 206
PI L E + QP
Sbjct: 1617 PKNPIRILHETKLQPN 1632
>gi|328696730|ref|XP_003240109.1| PREDICTED: endoribonuclease dcr-1-like isoform 2 [Acyrthosiphon
pisum]
Length = 1648
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 98/196 (50%), Gaps = 28/196 (14%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD--STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E I Y+FK+K LL +ALTH +Y S YQRLEF+GDA L ++ Y+ P
Sbjct: 1394 LERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYHKTP 1453
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE-------AVSQE--- 146
G+++ +R++ ++ A ++ + G ++F+ + + + + F E + QE
Sbjct: 1454 GEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQEVLY 1513
Query: 147 --DNTAVYGG-SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLE---------- 193
+ + Y S+ PKVL D+ ES+ AAIY+D + DL +W I LE
Sbjct: 1514 LIEESDCYAAESVDVPKVLGDLFESLIAAIYLDCNRDLNFVWAICYRFLEKEIKEFCDNV 1573
Query: 194 ---PIVTLEELQQQPQ 206
PI L E + QP
Sbjct: 1574 PKNPIRILHETKLQPN 1589
>gi|223944141|gb|ACN26154.1| unknown [Zea mays]
gi|414870637|tpg|DAA49194.1| TPA: hypothetical protein ZEAMMB73_470563 [Zea mays]
Length = 206
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 65/103 (63%), Gaps = 4/103 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY----TDSTSYQRLEFIGDAALGLALSNYVFLAYPQL 94
+E ++ Y F +K L+E ALTH S+ +Y+RLE++GD L +S VF Y L
Sbjct: 51 IEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSREVFRTYRTL 110
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVK 137
PG L+ LRAAN+ TEKLARVAV G ++F+RH A L D+ K
Sbjct: 111 QPGPLTRLRAANVDTEKLARVAVHRGLHRFLRHKAPKLQDQKK 153
>gi|328696734|ref|XP_003240110.1| PREDICTED: endoribonuclease dcr-1-like isoform 3 [Acyrthosiphon
pisum]
Length = 1630
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 98/196 (50%), Gaps = 28/196 (14%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD--STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E I Y+FK+K LL +ALTH +Y S YQRLEF+GDA L ++ Y+ P
Sbjct: 1376 LERRIGYSFKHKHLLAQALTHPTYQFGFSECYQRLEFLGDAILDFLITTYIIEHCYHKTP 1435
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE-------AVSQE--- 146
G+++ +R++ ++ A ++ + G ++F+ + + + + F E + QE
Sbjct: 1436 GEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQEVLY 1495
Query: 147 --DNTAVYGG-SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLE---------- 193
+ + Y S+ PKVL D+ ES+ AAIY+D + DL +W I LE
Sbjct: 1496 LIEESDCYAAESVDVPKVLGDLFESLIAAIYLDCNRDLNFVWAICYRFLEKEIKEFCDNV 1555
Query: 194 ---PIVTLEELQQQPQ 206
PI L E + QP
Sbjct: 1556 PKNPIRILHETKLQPN 1571
>gi|402309780|ref|ZP_10828755.1| ribonuclease III [Eubacterium sp. AS15]
gi|400370906|gb|EJP23887.1| ribonuclease III [Eubacterium sp. AS15]
Length = 233
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 116/244 (47%), Gaps = 42/244 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
VEN I Y FKNK L+ ALTHSSY + + +RLEF+GD+ LGL +SNY+F L
Sbjct: 12 VENTIGYKFKNKNYLQIALTHSSYVNEHKLTKDNERLEFLGDSVLGLIVSNYIFAYKSSL 71
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
G+L+ +R+ + + L +A K ++++ E +S G
Sbjct: 72 KEGELTKIRSTIVCEKSLMHIAEKLKIGQYIKLGK----------GEKIS---------G 112
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFD------LQKLWMIFRGLLEPIVTLE---ELQQQP 205
K +LAD VE++ AAIY+D DFD L L + L+ + +LQ++
Sbjct: 113 GAKRASILADAVEAMIAAIYLDSDFDNVSKYVLDWLGDTIKNALDNKKNDDYKSKLQEEV 172
Query: 206 QPV---TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262
Q V TL ++L G + R VY D + + K+ A+ AA++
Sbjct: 173 QKVRGRTLKYELIAMKGPDHE-------RIFTIGVYCDNKLIGTGKGHSKKEAEQLAAKD 225
Query: 263 ALEK 266
ALEK
Sbjct: 226 ALEK 229
>gi|312127786|ref|YP_003992660.1| ribonuclease iii [Caldicellulosiruptor hydrothermalis 108]
gi|311777805|gb|ADQ07291.1| ribonuclease III [Caldicellulosiruptor hydrothermalis 108]
Length = 222
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 126/247 (51%), Gaps = 47/247 (19%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E + Y FK+K LL ALTH S T S Y+RLEF+GDAAL L +S Y+F+ +P L
Sbjct: 4 IEKALGYKFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVNFPDLSE 63
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ +RAA + ++ L+ VA K H +K+++F E S
Sbjct: 64 GELTNIRAAVVCSQTLSEVAEK---LNLKNHIIFGKREKMEKFHENKS------------ 108
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV--------------TLEELQ 202
+LAD++E+I AI+++ FD KL I LL+P + L+E+
Sbjct: 109 ----ILADVLEAIFGAIFIESGFD--KLEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIV 162
Query: 203 QQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262
Q+ +++K C+ ++ K+++ + ++V+G V+ K+ A+ +AA +
Sbjct: 163 QREGKKKIVYKDCE----IIEKKYFK------SELFVEGKKVSEGYGTSKKEAQQDAAYK 212
Query: 263 ALEKLAQ 269
L ++ +
Sbjct: 213 FLLEMGE 219
>gi|222629185|gb|EEE61317.1| hypothetical protein OsJ_15421 [Oryza sativa Japonica Group]
Length = 1632
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 88/327 (26%), Positives = 143/327 (43%), Gaps = 36/327 (11%)
Query: 69 QRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHS 128
+RLEF+GDA L +++Y++ YP + PGQ++ LR+ + + LA AV+ +K +
Sbjct: 1308 KRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKD 1367
Query: 129 AAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIF 188
+ L + +F V ++ PK L DIVES A+ +D F+L +W +
Sbjct: 1368 SNHLTSAISKFEMYVKLSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKNY 1427
Query: 189 -----RGLLEPIVTL------EELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASV 237
LE I+ + E + P+ + + V +K + +NI
Sbjct: 1428 GYKHRNKSLEEILIVARKRESELIGYNEDPIDVEADI------SVKMKSPHIHEENIPFQ 1481
Query: 238 YVDGSFVASASSEQKEIAK-----LNAAREALEKLA-QSMPVNCDVCE------IFDDID 285
+ SF S+ + IA +N R KLA QS + + E D+
Sbjct: 1482 NTETSFTRSSKFHNQIIAGSGKHDVNNGRNNQPKLATQSGRLPSEATEKSNKKVYHGDMV 1541
Query: 286 EKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI---ATTDGVLFITG 342
K A+ L ELC W P +K+ K+EGPSH +KF V + + +L
Sbjct: 1542 HK----TARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHS 1597
Query: 343 DEKSRVKDAENSAASMMLRALRESTYL 369
D K + K A+ AA L L++ +L
Sbjct: 1598 DGKLQKKAAQEHAAQGALWCLKQLGHL 1624
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E +I Y FK+K LL +A H S++ + YQ+ EF+GDA L +++Y++ YP + P
Sbjct: 1185 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQKTEFLGDAVLEYVITSYLYSTYPDIKP 1244
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
GQ++ LR+ + + LA AV+ +K + + L + +F
Sbjct: 1245 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKF 1287
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 19 LKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAA 78
LK+ ML+S P E + I+ EALT + S +R E +GDA
Sbjct: 976 LKDVMLSSFP----EASQISASGIL-----------EALTTEKCLERISLERFEVLGDAF 1020
Query: 79 LGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
L + + F+ Y LD GQL+ R+ ++ L ++++ ++R
Sbjct: 1021 LKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1068
>gi|258567596|ref|XP_002584542.1| predicted protein [Uncinocarpus reesii 1704]
gi|237905988|gb|EEP80389.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1055
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 9/164 (5%)
Query: 25 TSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALG 80
T++ P D V ++ + Y FK +LL A THSSY + + YQRLEF+GD+ L
Sbjct: 852 TAVSDPAEIDLVAQIKEKLGYQFKYPKLLRSAFTHSSYPSAWAAVPCYQRLEFLGDSLLD 911
Query: 81 LALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA 140
+A +++ YP DP L+ + A +S + L VAVK G + +RH +A + ++ +
Sbjct: 912 MACVEHLYHRYPDKDPQWLTEHKMAMVSNKFLGCVAVKLGLHPHLRHFSAPIQSQIATYV 971
Query: 141 EAV-----SQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDF 179
E + D+ + + PK L D+VE+ AI++D DF
Sbjct: 972 EEIEAAELESGDSPDAWTSTSDPPKCLPDMVEAYIGAIFIDSDF 1015
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R + + L + A+ Y+F+R
Sbjct: 699 NYERLEFLGDCFLKMATSISLFTMNPDNDEYDFHVKRMCLVCNQNLFKAALNLKLYEFIR 758
Query: 127 HSAAALDDKVKEFAEAVS-----QEDNTAVYGGSIKAPKVLADIVESIAAAIYV 175
+ + + + E ++ + TA A K +AD+ E++ A Y+
Sbjct: 759 SQSFS---RRGWYPEGLTLLQGKGQSKTAPENKHALADKTIADVCEALIGASYL 809
>gi|313236326|emb|CBY11646.1| unnamed protein product [Oikopleura dioica]
Length = 1519
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 102/202 (50%), Gaps = 28/202 (13%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYP--QL 94
E I Y FKNK L ++LTH+SY + YQRLEF+GDA L ++ ++F +P +
Sbjct: 1253 EKKIGYTFKNKGYLLQSLTHASYQYNQVTNCYQRLEFLGDAVLDFLITRHLF-DHPTKRF 1311
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA------------EA 142
PG+L+ LRAA ++ A +AVK F+K++ L + ++++ EA
Sbjct: 1312 SPGELTDLRAALVNNNIFAALAVKFDFHKYLYALTPDLHNVIRDYVLYCQTRQDVEGMEA 1371
Query: 143 VSQE----------DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
V + + I+ PKVL DI ES+A AIY+D +L +W ++R +L
Sbjct: 1372 VLKRIRLEEEPEEEEGDHEDSEDIEVPKVLGDIYESVAGAIYLDSGMNLDAVWGVYRPML 1431
Query: 193 EPIVTLEELQQQPQPVTLLFKL 214
+ + + P+ L +L
Sbjct: 1432 QKYIDKYSINPPRSPIRELLEL 1453
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
+ LT S +D + +RLE +GD L +++ Y++ Y GQLS R+ +S L R
Sbjct: 1051 QTLTLSKSSDGFNLERLEMLGDCFLKYSVTVYLYCKYEHQHEGQLSFFRSKKVSNRNLFR 1110
Query: 115 VAV 117
+ V
Sbjct: 1111 LGV 1113
>gi|312622598|ref|YP_004024211.1| ribonuclease iii [Caldicellulosiruptor kronotskyensis 2002]
gi|312203065|gb|ADQ46392.1| ribonuclease III [Caldicellulosiruptor kronotskyensis 2002]
Length = 222
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/160 (36%), Positives = 91/160 (56%), Gaps = 23/160 (14%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E + Y FK+K LL ALTH S T S Y+RLEF+GDAAL LA+S Y+F+ +P+L
Sbjct: 4 IEKALGYKFKDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLFVHFPELSE 63
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ +RAA + ++ L+++A K H +K+++F E S
Sbjct: 64 GELTNIRAAVVCSQTLSKIAEK---LNLKNHIIFGKREKMEKFHENKS------------ 108
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV 196
+LAD+VE+I AI+++ F+ KL I LL+P +
Sbjct: 109 ----ILADVVEAIFGAIFIESGFE--KLEKIIVNLLKPYI 142
>gi|402225633|gb|EJU05694.1| hypothetical protein DACRYDRAFT_113750 [Dacryopinax sp. DJM-731 SS1]
Length = 1596
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 125/252 (49%), Gaps = 12/252 (4%)
Query: 28 PSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSN 85
PS ++ +++ + Y F+N LL EALTH ++ DS SYQRLEF+GDA + + + +
Sbjct: 1136 PSCGASTSLRLLQDTLGYEFRNPLLLLEALTHPTFPDSQTPSYQRLEFLGDAVVDVFIVD 1195
Query: 86 YVFLAYPQLDPGQLSLLRAANISTEKLARVAVKH-GFYKFVRHSAAALDDKVK---EFAE 141
Y+F +P +L+ ++ + L VA++ G YK + + A LD ++ E
Sbjct: 1196 YLFHKFPACTAHKLTWMKHLIVCNSLLGAVAIRELGLYKHMLYMARRLDLEITLSVRVLE 1255
Query: 142 AVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEEL 201
+S ++ A PK L D++E++ A+ VD ++DLQ + L + I+ L
Sbjct: 1256 PLSYQE-LAEKWWEFDPPKALNDVLEAVLGAVLVDTNYDLQLCRPVLERLFKDILPLAHP 1314
Query: 202 QQQPQPVTLLFKLCQKNG-KQVDIKHWRK----NRKNIASVYVDGSFVASASSEQKEIAK 256
PV L+ + G ++ + R+ N K+ V V + ++ ++ + IAK
Sbjct: 1315 DVPLHPVMELYMWAARKGCTRIRFEKSRQRDESNSKDTFHVLVHDTEISRSTGDSLSIAK 1374
Query: 257 LNAAREALEKLA 268
AA EA L+
Sbjct: 1375 CFAAYEAKATLS 1386
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EAL +Y RLEF+GD L LA S ++F YP GQLS+L+ ++ L
Sbjct: 983 EALVIPGVVPKYNYDRLEFLGDTFLKLATSIHIFNKYPHRHEGQLSVLKDGSVRNTYLRG 1042
Query: 115 VAVKHGFYKFVRHSAAALDDKV---KEFAEAVSQE---DNTAVYGGSIKAPKVLADIVES 168
A + G Y + + DKV K + V+ D Y + L+D VES
Sbjct: 1043 KAYRLGIYHY------NVTDKVCGPKRWMPPVTTHTTLDGVIPYVKQTSLRRCLSDCVES 1096
Query: 169 IAAAIYV 175
+ A Y+
Sbjct: 1097 LLGAGYL 1103
>gi|188593364|emb|CAO78751.1| Oikopleura cytoplasmic RNAse III enzyme Dicer [Oikopleura dioica]
Length = 1814
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 28/202 (13%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYP--QL 94
E I Y FKNK L ++LTH+SY + YQRLEF+GDA L ++ ++F +P +
Sbjct: 1548 EKKIGYTFKNKGYLLQSLTHASYQYNQVTNCYQRLEFLGDAVLDFLITRHLF-DHPTKRF 1606
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA------------EA 142
PG+L+ LRAA ++ A +AVK F+K++ L + ++++ EA
Sbjct: 1607 SPGELTDLRAALVNNNIFAALAVKFDFHKYLYALTPDLHNVIRDYVLYCQTRQDVEGMEA 1666
Query: 143 V----------SQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
V +E+ I+ PKVL DI ES+A AIY+D +L +W ++R +L
Sbjct: 1667 VLKRIRLEEEPEEEEGDHEDSEDIEVPKVLGDIYESVAGAIYLDSGMNLDAVWGVYRPML 1726
Query: 193 EPIVTLEELQQQPQPVTLLFKL 214
+ + + P+ L +L
Sbjct: 1727 QKYIDKYSINPPRSPIRELLEL 1748
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+ NI N ++L+ LT S +D + +RLE +GD L +++ Y++ Y GQ
Sbjct: 1281 LHNIENVGPTPDQILQ-TLTLSKSSDGFNLERLEMLGDCFLKYSVTVYLYCKYEHQHEGQ 1339
Query: 99 LSLLRAANISTEKLARVAV 117
LS R+ +S L R+ V
Sbjct: 1340 LSFFRSKKVSNRNLFRLGV 1358
>gi|392567716|gb|EIW60891.1| hypothetical protein TRAVEDRAFT_146565 [Trametes versicolor FP-101664
SS1]
Length = 1459
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 12/220 (5%)
Query: 5 SFTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSY-- 62
SF P Y LL M S PSP ++ + Y F++ +LL EA+TH S+
Sbjct: 1091 SFGGPTPWNIRYGLL---MPKSEPSP----LFLTLQEALGYRFEHGQLLLEAVTHPSFGS 1143
Query: 63 TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKH-GF 121
DS+SYQRLEF+GDA + + ++ Y++ +P+ GQLS R+ + LA +AV G
Sbjct: 1144 ADSSSYQRLEFLGDALIDMVVTEYLYKKFPEATSGQLSWARSRAVCGTALASLAVNRLGL 1203
Query: 122 YKFVRHSAAALDDKVKEFAEAVSQEDNTAVY--GGSIKAPKVLADIVESIAAAIYVDIDF 179
+K + + L + + + + N + G PK L+D+ ES+ A++VD D+
Sbjct: 1204 HKLLLINNVELSIAIGRYVPILEEITNEEIILDGWKHDPPKALSDVFESVMGALFVDCDY 1263
Query: 180 DLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNG 219
+ K + ++E ++ PV+ L K+G
Sbjct: 1264 NYDKAAAVIEMVMEDLIGALRPDLPRDPVSQLMVWVAKSG 1303
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 30/181 (16%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
LL +ALT S + QRLE +GDA L L+ +++ YP GQL ++ +++
Sbjct: 950 LLVQALTLPSTNAQFNNQRLETLGDAVLKLSAVVHLYNKYPHRHEGQLDAMKRVSVAN-- 1007
Query: 112 LARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAP-----KVLADIV 166
R + G + + ++ ++ + +S ED+ S +AP K + D +
Sbjct: 1008 --RTLLARGVERSLERHLSSEPQSMRMWRYVISSEDDLFSARPSRQAPRRFPRKSMQDCM 1065
Query: 167 ESIAAAIY--------------VDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
E++ A + + + F W I GLL P + +P P+ L
Sbjct: 1066 EALLGASFATGGIDMALHAGTVLGVSFGGPTPWNIRYGLLMP-------KSEPSPLFLTL 1118
Query: 213 K 213
+
Sbjct: 1119 Q 1119
>gi|260831340|ref|XP_002610617.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae]
gi|229295984|gb|EEN66627.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae]
Length = 1760
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 92/173 (53%), Gaps = 16/173 (9%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y+F +K + +A TH SY T + YQRLEF+GDA L ++N++F Q P
Sbjct: 1513 EETVQYSFNDKAYMLQAFTHPSYHYNTITDCYQRLEFLGDAVLDYLITNHLFKDPQQHSP 1572
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ----------- 145
G L+ LR+A ++ A +AVK+ ++K+++ + L + + F + +
Sbjct: 1573 GALTDLRSALVNNTIFASLAVKYDYHKYLKFVSPELFNIISNFVQFQQEQGEEQGMDSQT 1632
Query: 146 --EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV 196
D I+ PK L D+ ES+A AIY+D L+ +W ++ +++P++
Sbjct: 1633 YINDEGEEESEDIEVPKALGDVFESVAGAIYLDSGMSLETVWRVYYRMMKPLI 1685
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ +ALT S+ D + +RLE IGD+ L A++ +++ Y ++ G+LS +R+ +S
Sbjct: 1232 LILQALTLSNAGDFFNLERLETIGDSFLKHAITTFLYCTYSRVHEGKLSYMRSRQVSNLN 1291
Query: 112 LARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN 148
L R+ + G R A+ D V ++N
Sbjct: 1292 LYRLGKRKGLAS--RMVASIFDPAVNWLPPGFCIQNN 1326
>gi|409082707|gb|EKM83065.1| hypothetical protein AGABI1DRAFT_125544 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1430
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 119/247 (48%), Gaps = 16/247 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSS--YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E I Y F+N LL EA+TH S ++ + SYQRLEF+GD+ + + ++ Y+F +P+
Sbjct: 1135 LEKEIGYVFENPELLVEAVTHPSLEFSSTPSYQRLEFLGDSVIKMLVTEYLFHKFPKATS 1194
Query: 97 GQLSLLRAANISTEKLARVAV-KHGFYKFVRHSAAALDDKVKEFAEAV--SQEDNTAVYG 153
QL+L R I + LA +A+ K +K++ ++ L++ + + + + D G
Sbjct: 1195 HQLALPRTKAICSPALAHIAIRKIHIHKYLLQNSIDLNNAINLYVPVLESATADEIVRRG 1254
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
PK ++D ES+ A++VD+ +DL + I L+E I+ + PV+ + +
Sbjct: 1255 WRYDPPKAISDAFESVVGAVFVDVGYDLDRTGGIVCRLMEDILEVLNPSIPKDPVSEVLE 1314
Query: 214 L-----CQKNGKQVDIKHWRKNRKNIA----SVYVDGSFVASA-SSEQKEIAKLNAAREA 263
C K G + K + R A S G VA S K +++ AA A
Sbjct: 1315 WLASVGCSK-GHNLKFKRSTEERNGQAVESVSAVFHGQIVAGPIVSNSKAVSRFTAAERA 1373
Query: 264 LEKLAQS 270
L S
Sbjct: 1374 FMALRAS 1380
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
I F LL EALT + S QRLE +GDA L + + ++ YP+ GQLS L
Sbjct: 957 IGLPFIPDDLLMEALTLPNVDADFSNQRLETLGDAVLDICTTVHLMFKYPRRHEGQLSTL 1016
Query: 103 RAANISTEKLARVAVKHGFYKFV 125
RA +S + L A +F+
Sbjct: 1017 RAGRVSNKFLVSCARTVELERFI 1039
>gi|384915457|ref|ZP_10015677.1| Ribonuclease 3 [Methylacidiphilum fumariolicum SolV]
gi|384527143|emb|CCG91546.1| Ribonuclease 3 [Methylacidiphilum fumariolicum SolV]
Length = 242
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 124/258 (48%), Gaps = 46/258 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY------TDSTSYQRLEFIGDAALGLALSNYVFLAYP 92
+E + + F+N +LLEEALTH SY T +QRLEF+GDA LGLA++ ++ +P
Sbjct: 6 LEERLGHTFRNNQLLEEALTHPSYFVESMKTTGKDFQRLEFLGDAVLGLAITEKLYEIFP 65
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
D G+L+ LRA +S + L+ ++ G K++R +E N
Sbjct: 66 SFDEGKLTKLRAKLVSRKVLSPLSSSLGIGKYLRLGKG--------------EEKNQ--- 108
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPV---- 208
G K P LA+ +ES+ A+Y+D ++ K + +F+ L P+ EL + P
Sbjct: 109 -GRTK-PSNLANALESVIGALYLDGGWEKTKSF-VFQ-LFSPLFL--ELHKDPSAFLEYE 162
Query: 209 ---TLLFKLCQKNGKQVDIKHWR--------KNRKNIASVYVDGSFVASASSEQKEIAKL 257
LL + QK G ++ + +R N+ V + S + K+ A+L
Sbjct: 163 NSKGLLQEFLQKKGMELPV--YRIVMESGEAHNKWYEVEVLWKNQVLGKGSGKSKKEAEL 220
Query: 258 NAAREALEKLAQSMPVNC 275
AA+EA EKL P++
Sbjct: 221 RAAKEAFEKLISQTPIDL 238
>gi|392895692|ref|NP_498761.2| Protein DCR-1 [Caenorhabditis elegans]
gi|408360292|sp|P34529.3|DCR1_CAEEL RecName: Full=Endoribonuclease dcr-1
gi|379657006|emb|CCD71200.2| Protein DCR-1 [Caenorhabditis elegans]
Length = 1910
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 114/251 (45%), Gaps = 20/251 (7%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E I Y FK + L +A TH+SY + + YQRLEF+GDA L ++ Y+F Q
Sbjct: 1646 LEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDSRQYS 1705
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED-----NTA 150
PG L+ LR+A ++ A +AVK F K L +++F + S+ + N
Sbjct: 1706 PGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSERNFDTNFNAE 1765
Query: 151 VY------------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTL 198
+Y I+ PK + DI ES+A AIY+D +L W + ++ + L
Sbjct: 1766 MYMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMRGTIEL 1825
Query: 199 EELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLN 258
P+ L + Q + ++ ++ K +V V + + IAK
Sbjct: 1826 CCANPPRSPIRELMEFEQSKVRFSKMERILESGKVRVTVEVVNNMRFTGMGRNYRIAKAT 1885
Query: 259 AAREALEKLAQ 269
AA+ AL+ L Q
Sbjct: 1886 AAKRALKYLHQ 1896
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
LL ALT S+ D S +R E IGD+ L A ++Y++ G+LS R+ +S
Sbjct: 1396 LLLTALTTSNAADGMSLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSNCN 1455
Query: 112 LARVAVKHGFYKFV 125
L R+ K G + +
Sbjct: 1456 LYRLGKKLGIPQLI 1469
>gi|312793340|ref|YP_004026263.1| ribonuclease iii [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312180480|gb|ADQ40650.1| ribonuclease III [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 222
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 128/247 (51%), Gaps = 47/247 (19%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E + Y FK+K LL ALTH S T S Y+R EF+GDAAL LA+S Y+F+ +P+L
Sbjct: 4 IERALGYTFKDKNLLRLALTHKSATHSNKNCYERFEFLGDAALELAVSKYLFVHFPELSE 63
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ +RAA + ++ L++VA K H +K+++F E S
Sbjct: 64 GELTNIRAAVVCSQTLSKVAEK---LNLKNHIIFGKREKMEKFHENKS------------ 108
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT--------------LEELQ 202
+LAD++E+I AI+++ FD+ + I LL+P + L+E+
Sbjct: 109 ----ILADVLEAIFGAIFIESGFDI--VEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIV 162
Query: 203 QQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262
Q+ +++K C+ ++ K+++ + ++++G V+ K+ A+ +AA +
Sbjct: 163 QREGNKKIVYKDCE----IIEKKYFK------SELFIEGKKVSEGYGTSKKEAQQDAAYK 212
Query: 263 ALEKLAQ 269
L ++ +
Sbjct: 213 FLLEMGE 219
>gi|299754132|ref|XP_002911949.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130]
gi|298410618|gb|EFI28455.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130]
Length = 1457
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 118/238 (49%), Gaps = 17/238 (7%)
Query: 43 INYNFKNKRLLEEALTHSSY-TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSL 101
+ Y F + +L EA+TH S+ TD SYQRLEF+GDA L L + +Y++ +P+ + QLSL
Sbjct: 1128 LGYTFHSNSILVEAVTHPSFATDGPSYQRLEFLGDAILDLVVVHYLYEKFPEANSHQLSL 1187
Query: 102 LRAANISTEKLARVAVKH-GFYKFVRHSAAALDDKVKEFA---EAVSQEDNTAVYGGSIK 157
LRA I LA +A+K G +K + + L ++ + E ++ E+ Y
Sbjct: 1188 LRAKVICAPTLAYLAIKELGVHKILLINNMGLYRAIEAYVPVFEDITDEEIARSY-YKFD 1246
Query: 158 APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQK 217
PK ++D+ ES+ A+ VD ++ K + ++ ++ L PV+LL + +
Sbjct: 1247 PPKAISDVFESLVGAVLVDSGYNYDKTSAVVLDIMSKVLDQLSLDMAKDPVSLLLEWVAQ 1306
Query: 218 NG-KQVDIKHWRKNRKNIASVY------VDGSFVASASSEQKEIAKLNAAREALEKLA 268
+G +++ RK + V V G VAS+ +AK A+ AL L
Sbjct: 1307 HGCREISFSKNRKFNYDAGVVLEVHGKQVVGPIVASSPG----VAKFIASERALSILT 1360
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 47 FKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAAN 106
F ++L E+LT + + S QRLE +GDA L L + ++F YP GQL+ LR A
Sbjct: 953 FIEDKILIESLTIPAALLAFSNQRLETLGDAVLQLCTTVHLFNQYPNRHEGQLTTLRRAT 1012
Query: 107 ISTEKLARVAVKHGFYKFV 125
+S + L + A++ G +++
Sbjct: 1013 VSNKFLLQRALEMGLEEYI 1031
>gi|170591572|ref|XP_001900544.1| Type III restriction enzyme, res subunit family protein [Brugia
malayi]
gi|158592156|gb|EDP30758.1| Type III restriction enzyme, res subunit family protein [Brugia
malayi]
Length = 1856
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 117/252 (46%), Gaps = 25/252 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E+ I Y F ++ L +A TH+SY + YQRLEF+GDA L ++ ++F
Sbjct: 1593 LEDCIGYRFHDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQHSAHYS 1652
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED------NT 149
PG L+ LR+A ++ A +AVK+ F+K L +++F ++++ N
Sbjct: 1653 PGVLTDLRSALVNNTIFASLAVKYNFHKHFIAMCPRLHHMIEKFVCLCAEKNLSSANFNE 1712
Query: 150 AVYGGSI------------KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT 197
+Y + + PK + DI ES+A AIY+D L +W +F L++ T
Sbjct: 1713 EMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLNTVWRVFYNLMKE--T 1770
Query: 198 LEELQQQP--QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIA 255
+ E P P+ L ++ + + ++ + K +V + G + IA
Sbjct: 1771 INECCSNPPRSPIRELLEMEPERARFSKLERILETGKVRVTVDIQGKCRFTGMGRSYRIA 1830
Query: 256 KLNAAREALEKL 267
K AA+ AL L
Sbjct: 1831 KCTAAKRALRYL 1842
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 53 LEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKL 112
L +ALT S+ +D + +RLE +GD+ L A+++Y+F P+ G+LS R+ +S L
Sbjct: 1340 LLQALTLSNASDGINLERLETVGDSFLKYAVTDYLFHTNPEQHEGKLSFARSKEVSNCNL 1399
Query: 113 ARVAVKHGF 121
R+ KH
Sbjct: 1400 YRLGRKHNL 1408
>gi|380026731|ref|XP_003697097.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like [Apis
florea]
Length = 1362
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 17/192 (8%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E + Y FKN+ L +A TH SY+ + YQRLEF+GDA L +++Y++ L+
Sbjct: 1162 IETKLGYKFKNRGYLLQAFTHPSYSANHMTECYQRLEFLGDAILDFLITSYIYENCGNLN 1221
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE-------------- 141
PG L+ LR+A ++ A + V+HG + + + L+D ++ F +
Sbjct: 1222 PGSLTDLRSALVNNITFACLTVRHGLHIALLCYSPKLNDIIERFVKFQEERNHIVNDELL 1281
Query: 142 AVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEEL 201
+ E++ + PKVL DI ESI AIY+D + +L +W I ++ +
Sbjct: 1282 WILLEESECNIAEHVDVPKVLGDIFESIIGAIYLDSNKNLMVVWEIIYSIMHKEIDEFSK 1341
Query: 202 QQQPQPVTLLFK 213
QP+ +L++
Sbjct: 1342 NIPKQPIRILYE 1353
>gi|363892437|ref|ZP_09319605.1| ribonuclease III [Eubacteriaceae bacterium CM2]
gi|363893925|ref|ZP_09321018.1| ribonuclease III [Eubacteriaceae bacterium ACC19a]
gi|402839311|ref|ZP_10887803.1| ribonuclease III [Eubacteriaceae bacterium OBRC8]
gi|361963192|gb|EHL16275.1| ribonuclease III [Eubacteriaceae bacterium ACC19a]
gi|361964387|gb|EHL17431.1| ribonuclease III [Eubacteriaceae bacterium CM2]
gi|402270517|gb|EJU19778.1| ribonuclease III [Eubacteriaceae bacterium OBRC8]
Length = 233
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 120/252 (47%), Gaps = 46/252 (18%)
Query: 34 DAVFY--VENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNYV 87
D F+ +E I Y F+NK L++ ALTHSSY + S +RLEF+GD+ L L +SNY+
Sbjct: 4 DKAFFSGIEKNIGYVFENKGLIKTALTHSSYVNENKNSRDNERLEFLGDSILSLVVSNYI 63
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
F L G+L+ +RA+ + + L VA K ++R E
Sbjct: 64 FNYKSNLKEGELTKIRASCVCEKSLINVANKLKIGDYIRLGKG---------------EQ 108
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTL--------- 198
N+ G K +LAD E+I AAIY+D D + ++I L + IV+
Sbjct: 109 NS----GGKKRTSILADATEAIIAAIYLDSDLETVSKYVILW-LEDTIVSAIKHKKDSDY 163
Query: 199 -EELQQQPQPV---TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEI 254
+LQ++ Q V L +++ VD++ +RK VY D + K+
Sbjct: 164 KSKLQEEIQKVKGRVLKYEV-------VDVEGPDHDRKFTICVYCDNKLIGKGQGNSKKE 216
Query: 255 AKLNAAREALEK 266
A+ NAA++AL K
Sbjct: 217 AEQNAAQDALSK 228
>gi|429137921|gb|AFZ74931.1| dicer 2 [Aphis glycines]
Length = 1628
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 97/196 (49%), Gaps = 28/196 (14%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E I Y+FK+K LL +ALTH +Y + YQRLEF+GDA L ++ Y+ Q P
Sbjct: 1374 LERRIGYSFKHKHLLAQALTHPTYQFGYTECYQRLEFLGDAILDFLITTYIIQHCYQKTP 1433
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE-------AVSQE--- 146
G+++ +R++ ++ A ++ + G ++F+ + + + + F E + QE
Sbjct: 1434 GEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQEILY 1493
Query: 147 --DNTAVYGG-SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLE---------- 193
+ + Y S+ PKVL D+ ES+ AAIY+D DL +W LE
Sbjct: 1494 LIEESDCYAAESVDVPKVLGDLFESLIAAIYLDCGRDLNFVWTFCYRFLENEINEFCTNV 1553
Query: 194 ---PIVTLEELQQQPQ 206
PI L E + QP
Sbjct: 1554 PKNPIRILHETKLQPN 1569
>gi|295696065|ref|YP_003589303.1| ribonuclease III [Kyrpidia tusciae DSM 2912]
gi|295411667|gb|ADG06159.1| ribonuclease III [Kyrpidia tusciae DSM 2912]
Length = 231
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 116/245 (47%), Gaps = 42/245 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY-----TDSTSYQRLEFIGDAALGLALSNYVFLAYPQ 93
+E + F+N LL +A THSSY D +RLEF+GDA L L +S ++F AYP+
Sbjct: 8 LEARLGITFRNASLLRQAFTHSSYRNEHRGDVEDNERLEFLGDAVLELLVSEFLFRAYPR 67
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
G+L+ +RAA + L R A G +++R E +S
Sbjct: 68 FPEGELTRMRAAIVCEPSLVRFATALGLDQYIRLGR----------GEEMS--------- 108
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPV----- 208
G + P +LAD+ E++ AI++D + + ++ + LQ++ P+
Sbjct: 109 GGRRRPSLLADVYEALIGAIFLDQGLEAAREFL-------QRMMFPALQREQAPILDDYK 161
Query: 209 TLLFKLCQKNG------KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262
T+L + QK G + D + +R+ +A V++ G S K+ A+ +AARE
Sbjct: 162 TMLQEHVQKVGLGPLTYRITDERGPAHHREFVAQVWIGGQAYGEGSGRSKKEAEQHAARE 221
Query: 263 ALEKL 267
AL KL
Sbjct: 222 ALMKL 226
>gi|358332039|dbj|GAA50765.1| endoribonuclease Dicer homolog 4 [Clonorchis sinensis]
Length = 1042
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQLD 95
++NI+ Y FK+ LL ALTH S ++ SYQRLEF+GDA LG ++ Y++ + + D
Sbjct: 796 LQNILGYQFKDISLLIRALTHQSSPQTSLFGSYQRLEFLGDAVLGYVITIYLYEKHVEFD 855
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALD----------DKVKEFAEAVSQ 145
PGQL+ R+ +S LA V+H + ++ H+ A D D ++ +
Sbjct: 856 PGQLTESRSNIVSNNSLACAIVEHQLHPYIIHNQPAFDTAVTFIQFILDTTTSVSDQLEL 915
Query: 146 EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194
+ + G + K+LAD+ E+I AI+VD L + + LL+P
Sbjct: 916 LNQEVLKGLRV---KILADVFEAIVGAIFVDTKGSLSTVSQLIHRLLDP 961
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 6/134 (4%)
Query: 44 NYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQ-LDPGQLSLL 102
N + N L E+LT D+ + +RLE +GD+ L L + V+ P+ D GQL+
Sbjct: 564 NEHVPNPADLVESLTLLGARDAVNLERLELLGDSVLQLISTLTVYSGSPEGADEGQLTAR 623
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDK----VKEFAEAVSQEDNTAVYGGSIKA 158
R +S L +AV+ G+ + + D + + +V D+ +
Sbjct: 624 RVDLVSNSNLCNIAVRLGWQNYCTGQVYSPPDHFIFPCYDLSSSVPYRDSDTRLFVRLTD 683
Query: 159 PKVLADIVESIAAA 172
K LAD+VE+I
Sbjct: 684 -KSLADMVEAIVGC 696
>gi|363889235|ref|ZP_09316599.1| ribonuclease III [Eubacteriaceae bacterium CM5]
gi|361966837|gb|EHL19719.1| ribonuclease III [Eubacteriaceae bacterium CM5]
Length = 233
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 120/252 (47%), Gaps = 46/252 (18%)
Query: 34 DAVFY--VENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNYV 87
D F+ +E I Y F+NK L++ ALTHSSY + S +RLEF+GD+ L L +SNY+
Sbjct: 4 DKAFFSGIEKNIGYIFENKGLIKTALTHSSYVNENKNSRDNERLEFLGDSILSLVVSNYI 63
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
F L G+L+ +RA+ + + L VA K ++R E
Sbjct: 64 FNYKSNLKEGELTKIRASCVCEKSLINVANKLKIGDYIRLGKG---------------EQ 108
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTL--------- 198
N+ G K +LAD E+I AAIY+D D + ++I L + IV+
Sbjct: 109 NS----GGKKRTSILADATEAIIAAIYLDSDLETVSKYVILW-LEDTIVSAIKHKKDSDY 163
Query: 199 -EELQQQPQPV---TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEI 254
+LQ++ Q V L +++ VD++ +RK VY D + K+
Sbjct: 164 KSKLQEEIQKVKGRVLKYEV-------VDVEGPDHDRKFTICVYCDNKLIGKGQGNSKKE 216
Query: 255 AKLNAAREALEK 266
A+ NAA++AL K
Sbjct: 217 AEQNAAQDALSK 228
>gi|320590575|gb|EFX03018.1| rnase3 domain containing protein [Grosmannia clavigera kw1407]
Length = 1246
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 122/268 (45%), Gaps = 46/268 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+ Y F+ RLL A TH SY + SYQRLEF+GDA L +A+ +Y+F + DP
Sbjct: 950 LGYQFRFPRLLRSAFTHPSYPRIYENLPSYQRLEFLGDALLDMAIVDYLFHKFSNKDPQW 1009
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE----DNTAVYGG 154
L+ + A +S + LA ++V GF++ + + + ++ E+ V +E ++ AV G
Sbjct: 1010 LTEHKMAMVSNQFLAFLSVSLGFHRHILSFSGEMRKQILEYVTKVEEERVRAESEAVEAG 1069
Query: 155 S-------------IKAPKVLADIVESIAAAIYVDIDFDLQKLWM-IFRGLLEPI---VT 197
PK LAD++E+ A++VD ++D + F ++P ++
Sbjct: 1070 RPASEFARDYWVHVTHPPKALADVLEAYVGALFVDSEYDYHGTVLKFFNTHVQPYFKDMS 1129
Query: 198 LEELQQQPQPVTLLFK-LCQKNGKQVDIKHWRKNRKNI----------------ASVYVD 240
L + PVT K L Q+ G + WR + I A V
Sbjct: 1130 LYDTFANKHPVTFAVKMLSQRFG----CRDWRVIVQEIPDTEGEGCVTFATKVAAGFLVH 1185
Query: 241 GSFVASASSEQKEIAKLNAAREALEKLA 268
G V +E AK+ AA++AL K +
Sbjct: 1186 GQVVGHGIAESGRYAKIGAAKKALAKFS 1213
>gi|440468299|gb|ELQ37466.1| RNase3 domain-containing protein [Magnaporthe oryzae Y34]
gi|440485699|gb|ELQ65629.1| RNase3 domain-containing protein [Magnaporthe oryzae P131]
Length = 1658
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 24/210 (11%)
Query: 24 LTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAAL 79
L++ PS + ++N + Y FKN RLL A H SY + SYQRLEF+GD+ L
Sbjct: 1231 LSTPPSQTQLELCSQIKNKMGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLL 1290
Query: 80 GLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
+ +Y+F +P DP L+ + A +S + VAV GF++ + H AL + E+
Sbjct: 1291 DMVCVDYLFKKHPDKDPQWLTEHKMAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEW 1350
Query: 140 AEAVSQE----DNTAVYGGSIK-------------APKVLADIVESIAAAIYVDIDFDLQ 182
AE V+++ AV G + PK L DI+E+ A++VD +D
Sbjct: 1351 AELVTKKREEARQLAVRRGQREEDYARDFWIEVHHPPKCLPDILEAYVGALFVDTGYDYS 1410
Query: 183 KLWMIFRGLLEPI---VTLEELQQQPQPVT 209
+ F ++P +++ ++ PVT
Sbjct: 1411 AVVGFFDRHIKPYFADMSIYDMYSSKHPVT 1440
>gi|116333590|ref|YP_795117.1| ribonuclease III [Lactobacillus brevis ATCC 367]
gi|116098937|gb|ABJ64086.1| dsRNA-specific ribonuclease [Lactobacillus brevis ATCC 367]
Length = 229
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 117/246 (47%), Gaps = 43/246 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYP 92
+++ + +FK++ LL+EA T +SY + Y+R+EF+GDA + L +SNY+F YP
Sbjct: 9 LKDRFDIHFKDQSLLDEAFTQASYVNEHPHQGLKFYERIEFLGDAVMQLVVSNYIFRRYP 68
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ G+L+ LRAA ++ + A A + F +++R + +E A+A ++
Sbjct: 69 AMPQGRLTRLRAAMVNEQSFASFARECHFDQYIRLG------RGEEKAQARQRD------ 116
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI-----------FRGLLEPIVTLEEL 201
+L DI ES A+Y+D D ++ F + L+EL
Sbjct: 117 -------SLLCDIFESFIGALYMDQGLDKVVEFVTTVVFPKLDEGRFDEFFDHKTELQEL 169
Query: 202 QQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
Q+ PV + ++L + G D R +VYVD + K+ A+ NAAR
Sbjct: 170 VQKNGPVDIDYRLLDEEGPDND-------RAFKVAVYVDDKLLGEGHGHSKKHAEQNAAR 222
Query: 262 EALEKL 267
ALE L
Sbjct: 223 HALENL 228
>gi|389633725|ref|XP_003714515.1| dicer-like protein 1 [Magnaporthe oryzae 70-15]
gi|158706447|sp|A4RKC3.2|DCL1_MAGO7 RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease DCL1; Includes: RecName:
Full=ATP-dependent helicase DCL1
gi|351646848|gb|EHA54708.1| dicer-like protein 1 [Magnaporthe oryzae 70-15]
Length = 1591
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 24/210 (11%)
Query: 24 LTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAAL 79
L++ PS + ++N + Y FKN RLL A H SY + SYQRLEF+GD+ L
Sbjct: 1231 LSTPPSQTQLELCSQIKNKMGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLL 1290
Query: 80 GLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
+ +Y+F +P DP L+ + A +S + VAV GF++ + H AL + E+
Sbjct: 1291 DMVCVDYLFKKHPDKDPQWLTEHKMAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEW 1350
Query: 140 AEAVSQE----DNTAVYGGSIK-------------APKVLADIVESIAAAIYVDIDFDLQ 182
AE V+++ AV G + PK L DI+E+ A++VD +D
Sbjct: 1351 AELVTKKREEARQLAVRRGQREEDYARDFWIEVHHPPKCLPDILEAYVGALFVDTGYDYS 1410
Query: 183 KLWMIFRGLLEPI---VTLEELQQQPQPVT 209
+ F ++P +++ ++ PVT
Sbjct: 1411 AVVGFFDRHIKPYFADMSIYDMYSSKHPVT 1440
>gi|350270970|ref|YP_004882278.1| ribonuclease III [Oscillibacter valericigenes Sjm18-20]
gi|348595812|dbj|BAK99772.1| ribonuclease III [Oscillibacter valericigenes Sjm18-20]
Length = 235
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 118/248 (47%), Gaps = 46/248 (18%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYP 92
+E +NY F+N LLEEAL HSSY + S +RLEF+GD+ LG + ++FL +P
Sbjct: 12 LETKMNYTFQNPALLEEALNHSSYANEHRSRRMNSNERLEFLGDSVLGFVTAEFLFLQHP 71
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
L G L+ +RAA + + L VA K +++ K+ + EA
Sbjct: 72 DLPEGDLTRIRAALVCEQSLYEVARKLELGRYL---------KLGKGEEA---------- 112
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI-------------VTLE 199
GG + +LAD E++ AA+Y+D +I R LL+ L+
Sbjct: 113 GGGRERTSILADATEAVFAAVYLDGGITAAS-ALIHRCLLDAEREEVVEERRRDFKTELQ 171
Query: 200 ELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNA 259
EL Q+ LL+++ + G D + +A V ++G + + K+ A+ +A
Sbjct: 172 ELVQRKANQVLLYRMAGEKGPDHD-------KTFLAEVLLNGMVIGAGGGHSKKEAEQSA 224
Query: 260 AREALEKL 267
A+ A+E+L
Sbjct: 225 AKAAMEEL 232
>gi|160285502|pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
Human Dicer
gi|160285503|pdb|2EB1|B Chain B, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
Human Dicer
gi|160285504|pdb|2EB1|C Chain C, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
Human Dicer
Length = 200
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 92/173 (53%), Gaps = 16/173 (9%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 12 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 71
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 72 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 131
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV 196
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 132 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLI 184
>gi|195584278|ref|XP_002081941.1| Dcr-2 [Drosophila simulans]
gi|194193950|gb|EDX07526.1| Dcr-2 [Drosophila simulans]
Length = 1666
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 132/295 (44%), Gaps = 67/295 (22%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
++E+ + Y FK++R L +ALTH SY + SYQ LEFIGDA L +S Y+F ++
Sbjct: 1382 HLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKM 1441
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA-------------- 140
+PG L+ LR+A ++ LA + V+H + F+ L + + +F
Sbjct: 1442 NPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRVTNYV 1501
Query: 141 --------------------------EAVSQEDNTAV-------YGGSIKAPKVLADIVE 167
+ +SQE V ++ PK L D++E
Sbjct: 1502 HILLEEADVQPTPLDLDDELELPHANKCISQEAEQGVPPKGEFNMSTNVDVPKTLGDVLE 1561
Query: 168 SIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ--QPQPVTLLFKLCQ-KNGKQVDI 224
++ AAIY+D DLQ+ W + L EP ELQ+ + P+ + +L + K+ K V
Sbjct: 1562 ALIAAIYLDCR-DLQRTWEVIFRLFEP-----ELQEFTRNMPINPIRQLIEHKHAKPVFS 1615
Query: 225 KHWRKNRKNIAS---VYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD 276
+ + S ++ S K AKL+AA+ AL+ L++ CD
Sbjct: 1616 SPIMEGDTLMVSCQFTCMEKSIKVYGFGSNKNQAKLSAAKHALQLLSK-----CD 1665
>gi|402595090|gb|EJW89016.1| type III restriction enzyme [Wuchereria bancrofti]
Length = 1410
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 118/252 (46%), Gaps = 25/252 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E+ I Y F ++ L +A TH+SY + YQRLEF+GDA L ++ ++F
Sbjct: 1147 LEDCIGYRFNDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQHSSHYS 1206
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED------NT 149
PG L+ LR+A ++ A +AVK+ F+K L +++F ++++ N
Sbjct: 1207 PGVLTDLRSALVNNTIFASLAVKYNFHKHFIAMCPRLHHMIEKFVCLCAEKNLSSANFNE 1266
Query: 150 AVYGGSI------------KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT 197
+Y + + PK + DI ES+A AIY+D L +W +F L++ T
Sbjct: 1267 EMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLNIVWRVFYNLMKE--T 1324
Query: 198 LEELQQQP--QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIA 255
++E P P+ L ++ + + ++ + K +V + G + IA
Sbjct: 1325 IDECCSNPPRSPIRELLEMEPERARFSKLERILETGKVRVTVDIQGKCRFTGMGRSYRIA 1384
Query: 256 KLNAAREALEKL 267
K AA+ AL L
Sbjct: 1385 KCTAAKRALRYL 1396
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 53 LEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKL 112
L +ALT S+ +D S +RLE +GD+ L A+++Y+F P+ G+LS R+ +S L
Sbjct: 894 LLQALTLSNASDGISLERLETVGDSFLKYAVTDYLFHTNPEQHEGKLSFARSKEVSNCNL 953
Query: 113 ARVAVKHGFYKFV 125
R+ KH +
Sbjct: 954 YRLGRKHNLPSLI 966
>gi|171690380|ref|XP_001910115.1| hypothetical protein [Podospora anserina S mat+]
gi|170945138|emb|CAP71249.1| unnamed protein product [Podospora anserina S mat+]
Length = 1568
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 141/320 (44%), Gaps = 52/320 (16%)
Query: 16 YRLLKEAMLTSLPSPEM-EDAVFYVENIINYNFKNKRLLEEALTHSSYTDS----TSYQR 70
Y + K+ ++P+ + ED + Y F+ RLL A H +Y S SYQR
Sbjct: 1236 YAVYKKPAWQTMPTNSVQEDMAEKFHKRMGYRFQYPRLLRSAFQHPTYPTSWEKLPSYQR 1295
Query: 71 LEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAA 130
LEF+GDA L +A +++F +P DP L+ + A +S + L +AV GF++ ++HS+
Sbjct: 1296 LEFLGDALLDMACIDHLFHRFPGADPQWLTEHKMAMVSNQFLGCLAVYIGFHRSLQHSSP 1355
Query: 131 ALDDKVKEFAEAVSQ---------------EDNTA--VYGGSIKAPKVLADIVESIAAAI 173
A+ ++ + + + E N A + + PK L D +E+ AI
Sbjct: 1356 AVQSEIASYVTEIEEALAAAKAAAVQEGKSESNFARDFWVDCSRPPKCLPDTIEAYVGAI 1415
Query: 174 YVDIDFDLQKLWMIFRGLLE---PIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWR-- 228
+VD +D Q + F ++ + L + PVT L Q + + WR
Sbjct: 1416 FVDSSYDYQTVQDFFDKHIQFWFEDMRLYDTFANKHPVTFLGHEMQHRFR---CQEWRLL 1472
Query: 229 ---------------KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ---- 269
++ + +V V G +A A ++ +K+ AA++AL +L
Sbjct: 1473 TREIMVDKDEEGGMMGEKQVVCAVMVHGQKLAHAVAQSARYSKIGAAKKALRELEGLDQG 1532
Query: 270 --SMPVNCDVCEIFDDIDEK 287
V CD C++ +++ K
Sbjct: 1533 EFRRRVGCD-CKVVGEVEGK 1551
>gi|194755862|ref|XP_001960198.1| GF13246 [Drosophila ananassae]
gi|190621496|gb|EDV37020.1| GF13246 [Drosophila ananassae]
Length = 1727
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 105/237 (44%), Gaps = 52/237 (21%)
Query: 9 PRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENI---INYNFKNKRLLEEALTHSSYTD- 64
P + D RL M T++ + E++ + N+ + Y FK++ L +ALTH SY
Sbjct: 1413 PLTQLLDLRLGGANMRTNVSTTEIDSFLINHANLEQNLGYTFKDRGYLLQALTHPSYPTN 1472
Query: 65 --STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFY 122
+ YQ+LEFIGDA L +S Y+F ++ PGQL+ LR+A ++ LA + V+H +
Sbjct: 1473 RITGCYQQLEFIGDAILDFLISGYIFENNTKMTPGQLTDLRSALVNNTTLACICVRHKIH 1532
Query: 123 KFVRHSAAALDDKVKEFA--------------------------------------EAVS 144
F+ A L + + F E
Sbjct: 1533 LFILAENALLSEAIASFVQFQETQNHRVTNHVRILLEENDTTPLDVDGEVKSMEIDETTE 1592
Query: 145 QEDNTAV-----YGGS--IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194
E+N V Y S + PK L D++E++ AA+Y+D DL + W + L +P
Sbjct: 1593 SEENNGVPTKGDYNMSQNVDVPKALGDVLEALIAAVYLDCR-DLHRTWQVIYNLFKP 1648
>gi|302693114|ref|XP_003036236.1| hypothetical protein SCHCODRAFT_31237 [Schizophyllum commune H4-8]
gi|300109932|gb|EFJ01334.1| hypothetical protein SCHCODRAFT_31237, partial [Schizophyllum commune
H4-8]
Length = 1342
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 9/229 (3%)
Query: 43 INYNFKNKRLLEEALTHSSYT--DS-TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQL 99
+ Y F++ LL EALTHSS+ DS SY+RLEF+GDA + LA+ +Y++ +P + QL
Sbjct: 1093 LGYTFRDGGLLCEALTHSSFASLDSYGSYERLEFLGDAVINLAVVDYLYRKFPDANSDQL 1152
Query: 100 SLLRAANISTEKLARVAVKH-GFYKFVRHSAAALDDKVKEFAEAVSQE--DNTAVYGGSI 156
SL RA + + L+ ++VKH +K V + L + + A + + V G +
Sbjct: 1153 SLPRARAVCNQALSALSVKHLQLHKSVLVNNVELSIAINKHAPILEDKPYPEILVKGWKL 1212
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
PKVL+DI ESI A++VD +D + + +E ++ PV+ L
Sbjct: 1213 DPPKVLSDIFESIVGAVFVDTGYDYEITAAVVEQAMEGLLVHLSPAMPRDPVSELIIWVA 1272
Query: 217 KNG--KQVDIKHWRKNR-KNIASVYVDGSFVASASSEQKEIAKLNAARE 262
K+ +Q++ + R+ + + ++Y+ G+ +A + + A E
Sbjct: 1273 KSTCREQIEFRFVRRKQYPDGIAIYLHGTLLAGPITTMNHLVSRKLASE 1321
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
+ + + LL +ALT + QRLE +GDA L L+ + ++F YP GQL+ L
Sbjct: 919 LGLPYIERDLLIQALTLPCAGMPFNNQRLETLGDAVLELSTTVHLFNKYPHRHEGQLTPL 978
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
R IS + L A + +F+ +L + V + A + + L
Sbjct: 979 RQICISNKCLLTRAREVQLERFLTSETHSL-----SIWDYVEDSEVPARCARRLFPRRSL 1033
Query: 163 ADIVESIAAAIYVDIDFD 180
D +E+I A Y+ D
Sbjct: 1034 QDCMEAILGASYLTGGID 1051
>gi|440632076|gb|ELR01995.1| hypothetical protein GMDG_05164 [Geomyces destructans 20631-21]
Length = 1634
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/304 (27%), Positives = 132/304 (43%), Gaps = 41/304 (13%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS----TSYQRLEFIGDAALGLALSNYVFLAYPQL 94
+E NY+F RLL A TH SY + +YQRLEF+GD+ L +A N++F +P
Sbjct: 1305 IEITHNYHFHYPRLLRSAFTHPSYPFAYERVPNYQRLEFLGDSLLDMACVNFLFHRFPTK 1364
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFY----KFVRHSAAALDDKVKEFAEAVSQEDNTA 150
DP L+ + A +S + L V V GF+ +F ++ + V E EA Q + A
Sbjct: 1365 DPQWLTEHKMAMVSNQFLGAVCVALGFHTQLLQFNPIIQGSITEYVCEITEAREQAEQDA 1424
Query: 151 VYGGSIKA-------------PKVLADIVESIAAAIYVDIDFDLQKLWMIF----RGLLE 193
+ G + + PK L DI+E+ AI+VD F+ ++ F + E
Sbjct: 1425 IRHGKLASECARDYWLHTKLPPKCLPDIIEAYIGAIFVDSSFNYGEVERFFDLHMKWYFE 1484
Query: 194 PIVTLEELQQQPQPVTLLFKLCQKN---GKQVDIKHWRKNR------KNIASVYVDGSFV 244
I TL + PVT L K Q+N K + + K +A+V + +
Sbjct: 1485 DI-TLYDTFANKHPVTFLHKFLQQNMGCAKNIITASSMPDDASGTPPKILATVMIHSQIL 1543
Query: 245 ASASSEQKEIAKLNAAREALEKLAQSM------PVNCDVCEIFDDIDEKFEIEAAKQKLH 298
+ AK+ A++ALE L CD E D+++ +A ++ L
Sbjct: 1544 VGVERDSARYAKIAVAQQALEILKGGTLTQFRQTYRCDCKEKGLDVEDCHMEDAGQESLE 1603
Query: 299 ELCG 302
G
Sbjct: 1604 NHVG 1607
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S ++ +P + + R I + L VA++ Y+F+R
Sbjct: 1141 NYERLEFLGDCFLKMATSISLYTLHPDSNEFDFHVKRMLMICNKNLMDVALQLKLYEFIR 1200
Query: 127 HSA 129
A
Sbjct: 1201 SQA 1203
>gi|398392319|ref|XP_003849619.1| dsRNA-specific nuclease [Zymoseptoria tritici IPO323]
gi|339469496|gb|EGP84595.1| dsRNA-specific nuclease [Zymoseptoria tritici IPO323]
Length = 1537
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 120/278 (43%), Gaps = 32/278 (11%)
Query: 45 YNFKNKRLLEEALTHSS----YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
Y+F RLL A +H S + +YQRLEF+GDA L A +Y+F +P DP L+
Sbjct: 1258 YSFNYPRLLYSAFSHPSNPYMHAQVPNYQRLEFLGDALLDQASISYLFYKFPAADPQWLT 1317
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF------AEAVSQEDNTAVYGG 154
+ A +S + L + V GF+K +RHS ++L ++ + A S D +
Sbjct: 1318 EHKMAMVSNKFLGALCVNIGFHKHLRHSHSSLGKQIHAYVDELVEARTSSGPDCRDYWTT 1377
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIF----RGLLEPIVTLEELQQQPQPVTL 210
PK L D++ES A+++D +F+ ++ F + E + + P T
Sbjct: 1378 VSDPPKCLPDVIESFVGAMFIDSNFNFAEVQRFFEEHVKWYFEDMSIYDTFANN-HPCTH 1436
Query: 211 LFKLCQKNGKQVDIKHWRKNRKN----------IASVYVDGSFVASASSEQKEIAKLNAA 260
L + Q +D + K N +A V + VAS+ + A+L A
Sbjct: 1437 LHQRLQTGFGCMDYRLMAKELPNVEGGAERKDVVAVVMIHDRIVASSGGKSGRYARLRVA 1496
Query: 261 REALEKLAQSMP------VNCDVCEIFDDIDEKFEIEA 292
ALE L P C VC+ +D E + A
Sbjct: 1497 NRALEVLDGLAPFEFREKFGC-VCKGVEDSGEVITVGA 1533
>gi|80979101|gb|ABB54753.1| Dicer-2 [Drosophila simulans]
Length = 1714
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 132/295 (44%), Gaps = 67/295 (22%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
++E+ + Y FK++R L +ALTH SY + SYQ LEFIGDA L +S Y+F ++
Sbjct: 1430 HLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKM 1489
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA-------------- 140
+PG L+ LR+A ++ LA + V+H + F+ L + + +F
Sbjct: 1490 NPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRVTNYV 1549
Query: 141 --------------------------EAVSQEDNTAV-------YGGSIKAPKVLADIVE 167
+ +SQE V ++ PK L D++E
Sbjct: 1550 HILLEEADVQPTPLDLDDELELPHANKCISQEAEQGVPPKGEFNMSTNVDVPKTLGDVLE 1609
Query: 168 SIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ--QPQPVTLLFKLCQ-KNGKQVDI 224
++ AAIY+D DLQ+ W + L EP ELQ+ + P+ + +L + K+ K V
Sbjct: 1610 ALIAAIYLDCR-DLQRTWEVIFRLFEP-----ELQEFTRNMPINPIRQLIEHKHAKPVFS 1663
Query: 225 KHWRKNRKNIAS---VYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD 276
+ + S ++ S K AKL+AA+ AL+ L++ CD
Sbjct: 1664 SPIMEGDTLMVSCQFTCMEKSIKVYGFGSNKNQAKLSAAKHALQLLSK-----CD 1713
>gi|80979105|gb|ABB54755.1| Dicer-2 [Drosophila simulans]
gi|80979109|gb|ABB54757.1| Dicer-2 [Drosophila simulans]
Length = 1714
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 132/295 (44%), Gaps = 67/295 (22%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
++E+ + Y FK++R L +ALTH SY + SYQ LEFIGDA L +S Y+F ++
Sbjct: 1430 HLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKM 1489
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA-------------- 140
+PG L+ LR+A ++ LA + V+H + F+ L + + +F
Sbjct: 1490 NPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRVTNYV 1549
Query: 141 --------------------------EAVSQEDNTAV-------YGGSIKAPKVLADIVE 167
+ +SQE V ++ PK L D++E
Sbjct: 1550 HILLEEADVQPTPLDLDDELELPHANKCISQEAEQGVPPKGEFNMSTNVDVPKTLGDVLE 1609
Query: 168 SIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ--QPQPVTLLFKLCQ-KNGKQVDI 224
++ AAIY+D DLQ+ W + L EP ELQ+ + P+ + +L + K+ K V
Sbjct: 1610 ALIAAIYLDCR-DLQRTWEVIFRLFEP-----ELQEFTRNMPINPIRQLIEHKHAKPVFS 1663
Query: 225 KHWRKNRKNIAS---VYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD 276
+ + S ++ S K AKL+AA+ AL+ L++ CD
Sbjct: 1664 SPIMEGDTLMVSCQFTCMEKSIKVYGFGSNKNQAKLSAAKHALQLLSK-----CD 1713
>gi|195335297|ref|XP_002034311.1| GM19969 [Drosophila sechellia]
gi|194126281|gb|EDW48324.1| GM19969 [Drosophila sechellia]
Length = 1731
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 129/295 (43%), Gaps = 78/295 (26%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
++E+ + Y FK++R L +ALTH SY + SYQ LEFIGDA L +S Y+F ++
Sbjct: 1447 HLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKM 1506
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA-------------- 140
+PG L+ LR+A ++ LA + V+H + F+ L + + +F
Sbjct: 1507 NPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRVTNYV 1566
Query: 141 --------------------------EAVSQEDNTAV-------YGGSIKAPKVLADIVE 167
E +SQE V ++ PK L D++E
Sbjct: 1567 HILLEEADVLPTPLDLDDELELPHANECISQEAEQGVPPKGEFNMSTNVDVPKTLGDVLE 1626
Query: 168 SIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHW 227
++ AAIY+D DL++ W + L EP ELQ+ + V + N + I+H
Sbjct: 1627 ALIAAIYLDCR-DLRRTWDVIFRLFEP-----ELQEFTRNVPI-------NPIRQLIEH- 1672
Query: 228 RKNRKNIASVYVDG--------------SFVASASSEQKEIAKLNAAREALEKLA 268
+ + +S +DG S K AKL+AA+ AL++L+
Sbjct: 1673 KHAKPVFSSPIMDGDTLMVGCQFTCMEKSIKVYGFGSNKNQAKLSAAKHALQRLS 1727
>gi|403417815|emb|CCM04515.1| predicted protein [Fibroporia radiculosa]
Length = 1463
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 125/242 (51%), Gaps = 13/242 (5%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY--TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+++ + Y F+ +LL EA+TH S+ +++SYQRLEF+GDA + L + Y++ +P+
Sbjct: 1117 LQDTLGYRFRCGKLLLEAVTHPSFGAAETSSYQRLEFLGDALIDLTVMRYLYNKFPEATS 1176
Query: 97 GQLSLLRAANISTEKLARVAVKH-GFYKFVRHSAAALD---DKVKEFAEAVSQEDNTAVY 152
GQLS R+ + LA VAVK G K + + L K E++S+E+ +
Sbjct: 1177 GQLSWARSRAVCAPALASVAVKRLGLQKLLLVNNVELSIAMGKCIPILESLSEEE-IILS 1235
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVT-LL 211
G PK ++D++ES+ A++VD+DF+ +K I +L ++ + + PV+ L+
Sbjct: 1236 GWKQDPPKAMSDVLESVLGAVFVDLDFNFEKASSIAEQVLNDLLEVLTPELPRDPVSNLM 1295
Query: 212 FKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEK 266
+ Q ++V + K +I+ V + + V + +AK A+ AL
Sbjct: 1296 VWVAQAGCRRVTYRKSSSRPDVKRNDSISVVVHEHTLVGPLVAPNLSLAKGLASERALAI 1355
Query: 267 LA 268
L+
Sbjct: 1356 LS 1357
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
LL +ALT S + QRLE +GD+ L LA Y+F YP GQL +LR ++S
Sbjct: 951 LLVQALTLPSANAGFNNQRLETLGDSVLKLATVVYLFNKYPHRHEGQLDVLRRNSVSNRT 1010
Query: 112 LARVAVKHGFYKFV 125
L A + G +++
Sbjct: 1011 LLARAKEVGLEQYL 1024
>gi|300709179|ref|XP_002996756.1| hypothetical protein NCER_100079 [Nosema ceranae BRL01]
gi|239606080|gb|EEQ83085.1| hypothetical protein NCER_100079 [Nosema ceranae BRL01]
Length = 1131
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 21/159 (13%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
VE IINY FKNK +E+A+ H SY D S +Q+LE +GD L L +S+Y+F Y
Sbjct: 981 VEKIINYTFKNKGYIEKAMIHPSYKDNIFGSERFQKLELVGDCFLDLKVSDYIFFKYTDA 1040
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
DP L R + ++ A + K G Y F S L D+ ++F
Sbjct: 1041 DPETLHTHRKSLVNNHTFAMILFKSGLYDF---SFTGLSDQTRDFNNN------------ 1085
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLE 193
K K DI E++A A+ +D +FD + M F+ +L+
Sbjct: 1086 --KVSKCYGDIFEALAGAVILDSEFDFEMTDMFFKTVLK 1122
>gi|119174400|ref|XP_001239561.1| hypothetical protein CIMG_09182 [Coccidioides immitis RS]
Length = 1357
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 114/251 (45%), Gaps = 24/251 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQL 94
V+ + Y+FK +LL A TH SY + + YQRLEF+GDA L +A +++ +P
Sbjct: 1083 VKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHPDK 1142
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV-----SQEDNT 149
DP L+ + A +S + L VAV+ G + + H + +L ++ + E + D
Sbjct: 1143 DPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGDPP 1202
Query: 150 AVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQ 206
+ + PK L D+VE+ AI++D F + + F+ L+ +T+ +
Sbjct: 1203 DAWTLTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKKHFEDMTIYDTYANKH 1262
Query: 207 PVTLLF----------KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK 256
P T L C K G+ + + +A+V V VA + AK
Sbjct: 1263 PTTYLHNRLAIDFGCSNYCLKAGEVPYVD--GPGTRVLAAVIVHDEVVAEGVASSSRYAK 1320
Query: 257 LNAAREALEKL 267
L A+ AL KL
Sbjct: 1321 LKASEAALSKL 1331
>gi|119478976|ref|XP_001259517.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
gi|158706438|sp|A1DE13.1|DCL1_NEOFI RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease dcl1; Includes: RecName:
Full=ATP-dependent helicase dcl1
gi|119407671|gb|EAW17620.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
Length = 1538
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 123/273 (45%), Gaps = 29/273 (10%)
Query: 25 TSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS-----TSYQRLEFIGDAAL 79
T P +D +VE + Y+F RLL A+TH S + YQRLEF+GD+ L
Sbjct: 1243 TEKPRGSEDDLARHVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLL 1302
Query: 80 GLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
+ +F +P DP L+ + A +S + L ++VK GF++ + + L ++ +
Sbjct: 1303 DMVCVEDLFRRFPDRDPQWLTEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHY 1362
Query: 140 AEAVSQEDNTAVYGGSI-------KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
E + E A G++ PK L D+VE+ AI+VD FD Q + + F +
Sbjct: 1363 VEEI--ESAQAESRGAVDYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDFQVIEVFFERQI 1420
Query: 193 EPI---VTLEELQQQPQPVTLLF----------KLCQKNGKQVDIKHWRKNRKNIASVYV 239
+P +++ + P T L C K G+ I +A+V V
Sbjct: 1421 KPFFEDMSIYDTFANKHPTTFLHNKLTNEYGCTNYCLKAGELPTIDG--APAGVLAAVIV 1478
Query: 240 DGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
G+ ++ A S AK+ A+ +AL L +P
Sbjct: 1479 HGNVISEARSSSSRYAKVKASEKALAVLDGLLP 1511
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S ++ P D + R I + L A+K Y+++R
Sbjct: 1089 NYERLEFLGDCFLKMATSIALYTQNPDDDEFDYHVNRMCLICNKNLFNTAIKKQIYRYIR 1148
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI 177
+ F+ + D + G + K+L++ ++ D+
Sbjct: 1149 S---------RGFSRHIWYPDGLTLLHGKDHSKKLLSEGKHALGEKTIADV 1190
>gi|63054443|ref|NP_588215.2| dicer [Schizosaccharomyces pombe 972h-]
gi|1351642|sp|Q09884.1|DCR1_SCHPO RecName: Full=Protein Dicer; AltName: Full=Cell cycle control protein
dcr1; AltName: Full=RNA interference pathway protein
dcr1; Includes: RecName: Full=Endoribonuclease dcr1;
Includes: RecName: Full=ATP-dependent helicase dcr1
gi|157310516|emb|CAB41233.2| dicer [Schizosaccharomyces pombe]
Length = 1374
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 8/159 (5%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQ 93
Y+E I Y+FKNK+LL A H S +YQ+LEF+GDA L + Y++ YP
Sbjct: 1085 YIEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYPN 1144
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV-- 151
G+L+ ++ + + L+ + +K+++H +AA+ D + E+ E + TA
Sbjct: 1145 ATSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASEN 1204
Query: 152 --YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIF 188
+ I +PK ++D +E++ AI++D F LQ L +
Sbjct: 1205 PWFWFEIDSPKFISDTLEAMICAIFLDSGFSLQSLQFVL 1243
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
+ALT + + Y RLEF GD L L S VFL +P QL R IS L +
Sbjct: 916 QALTSAESQLNFDYDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYK 975
Query: 115 VAVKHGFYKF-------VRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVE 167
VA+ K+ +RH F ++ S + AV + K +AD+VE
Sbjct: 976 VAIDCELPKYALSTPLEIRHWCPY------GFQKSTSDKCRYAVLQKL--SVKRIADMVE 1027
Query: 168 SIAAAIYVDIDFD 180
+ A +D D
Sbjct: 1028 ASIGACLLDSGLD 1040
>gi|383856609|ref|XP_003703800.1| PREDICTED: endoribonuclease Dicer-like [Megachile rotundata]
Length = 1441
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 94/192 (48%), Gaps = 17/192 (8%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E + Y F+N+ LL +A TH SYT + YQRLEF+GDA L ++ Y++ L
Sbjct: 1241 IETKLGYRFENRALLLQAFTHPSYTANNVTECYQRLEFLGDAILDFLITCYIYENCGNLT 1300
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNT------ 149
PG L+ LR+A ++ A ++V++G + + A L+D + F + + D+
Sbjct: 1301 PGALTDLRSALVNNITFACLSVRYGLHTALLAYAPNLNDVIHRFVKFQEERDHIVNDELL 1360
Query: 150 --------AVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEEL 201
+ PKVL D+ ES+ AIY+D +L+K W I + +
Sbjct: 1361 WILLEEDECNMAEHVDVPKVLGDLYESVIGAIYLDSGKNLRKTWEIIYSFMHKEIDEFSK 1420
Query: 202 QQQPQPVTLLFK 213
QPV +L++
Sbjct: 1421 NIPKQPVRVLYE 1432
>gi|121713724|ref|XP_001274473.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
gi|119402626|gb|EAW13047.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
Length = 1552
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 125/271 (46%), Gaps = 32/271 (11%)
Query: 39 VENIINYNFKNKRLLEEALTHSS-----YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQ 93
VE + Y+F+ RLL A+TH S Y YQRLEF+GD+ L + +F +P
Sbjct: 1271 VEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVPCYQRLEFLGDSLLDMVCVEDLFHRFPD 1330
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ---EDNTA 150
DP L+ + A +S + L +AVK GF+K ++ + L ++ + E + E A
Sbjct: 1331 RDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESEGA 1390
Query: 151 V--YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQP 205
V + + PK L D+VE+ AI+VD DF + + F+ ++P +++ +
Sbjct: 1391 VDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFANK 1450
Query: 206 QPVTLLF----------KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIA 255
P T L C K G+ I +A+V V S V+ A++ A
Sbjct: 1451 HPTTFLHNRLANEFGCTNYCLKAGEMPAIDGMPAGV--LAAVIVHNSVVSEATASSSRYA 1508
Query: 256 KLNAAREALEKLAQSMP------VNCDVCEI 280
K+ A+ AL L +P NC+ C++
Sbjct: 1509 KIRASERALVVLDGLLPYEFRQRYNCN-CQV 1538
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L A K Y+++R
Sbjct: 1103 NYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNTAKKRQIYRYIR 1162
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI 177
+ F+ V D + G + K+L+ ++ D+
Sbjct: 1163 S---------RSFSRHVWYPDGLTLLQGKDHSKKMLSQAKHALGEKTIADV 1204
>gi|442570277|sp|Q1DKI1.3|DCL1_COCIM RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease DCL1; Includes: RecName:
Full=ATP-dependent helicase DCL1
gi|392869759|gb|EJB11896.1| dicer-like protein 1 [Coccidioides immitis RS]
Length = 1500
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 114/251 (45%), Gaps = 24/251 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQL 94
V+ + Y+FK +LL A TH SY + + YQRLEF+GDA L +A +++ +P
Sbjct: 1226 VKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHPDK 1285
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV-----SQEDNT 149
DP L+ + A +S + L VAV+ G + + H + +L ++ + E + D
Sbjct: 1286 DPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGDPP 1345
Query: 150 AVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQ 206
+ + PK L D+VE+ AI++D F + + F+ L+ +T+ +
Sbjct: 1346 DAWTLTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKKHFEDMTIYDTYANKH 1405
Query: 207 PVTLLF----------KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK 256
P T L C K G+ + + +A+V V VA + AK
Sbjct: 1406 PTTYLHNRLAIDFGCSNYCLKAGEVPYVDG--PGTRVLAAVIVHDEVVAEGVASSSRYAK 1463
Query: 257 LNAAREALEKL 267
L A+ AL KL
Sbjct: 1464 LKASEAALSKL 1474
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R + + L + AV+ Y F+R
Sbjct: 1059 NYERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLVCNQNLFKTAVRFKLYAFIR 1118
>gi|158706457|sp|A1CBC9.2|DCL1_ASPCL RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease dcl1; Includes: RecName:
Full=ATP-dependent helicase dcl1
Length = 1534
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 125/271 (46%), Gaps = 32/271 (11%)
Query: 39 VENIINYNFKNKRLLEEALTHSS-----YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQ 93
VE + Y+F+ RLL A+TH S Y YQRLEF+GD+ L + +F +P
Sbjct: 1253 VEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVPCYQRLEFLGDSLLDMVCVEDLFHRFPD 1312
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ---EDNTA 150
DP L+ + A +S + L +AVK GF+K ++ + L ++ + E + E A
Sbjct: 1313 RDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESEGA 1372
Query: 151 V--YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQP 205
V + + PK L D+VE+ AI+VD DF + + F+ ++P +++ +
Sbjct: 1373 VDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFANK 1432
Query: 206 QPVTLLF----------KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIA 255
P T L C K G+ I +A+V V S V+ A++ A
Sbjct: 1433 HPTTFLHNRLANEFGCTNYCLKAGEMPAIDGMPAGV--LAAVIVHNSVVSEATASSSRYA 1490
Query: 256 KLNAAREALEKLAQSMP------VNCDVCEI 280
K+ A+ AL L +P NC+ C++
Sbjct: 1491 KIRASERALVVLDGLLPYEFRQRYNCN-CQV 1520
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L A K Y+++R
Sbjct: 1085 NYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNTAKKRQIYRYIR 1144
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI 177
+ F+ V D + G + K+L+ ++ D+
Sbjct: 1145 S---------RSFSRHVWYPDGLTLLQGKDHSKKMLSQAKHALGEKTIADV 1186
>gi|341893002|gb|EGT48937.1| CBN-DCR-1 protein [Caenorhabditis brenneri]
Length = 1927
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 114/251 (45%), Gaps = 24/251 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E I Y FK + L +A TH+SY++ + YQRLEF+GDA L ++ ++F Q
Sbjct: 1662 LEEKIGYRFKERAYLVQAFTHASYSNNRVTGCYQRLEFLGDAVLDYMITRFLFEDVRQYS 1721
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED-----NTA 150
PG L+ LR+A ++ A +AVK+ F K L +++F + + + N
Sbjct: 1722 PGVLTDLRSALVNNTIFASLAVKYEFQKHFIAMCPGLHHMIEKFVQLCADRNFDTNFNAE 1781
Query: 151 VY------------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTL 198
+Y ++ PK L D+ ES+A AIY+D +L W + ++ T+
Sbjct: 1782 MYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVLFHMMRS--TI 1839
Query: 199 EELQQQP--QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK 256
E P P+ L +L + ++ + K +V V + + IAK
Sbjct: 1840 ESCCANPPRSPIRELMELESSKARFSKMERILETGKVRVTVDVGNNMRFTGMGRNYRIAK 1899
Query: 257 LNAAREALEKL 267
AA+ AL L
Sbjct: 1900 ATAAKRALRYL 1910
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 1 MNPESFTLPRATVTDY-RLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTH 59
+ P F+ + + T + RLLKE ++A+ +V++ + + LL ALT
Sbjct: 1369 LQPRPFSFEKESQTMHGRLLKE---------RDQEAISHVDSDVGMGV-SPCLLLTALTT 1418
Query: 60 SSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKH 119
S+ D S +R E IGD+ L A ++Y++ G+LS R+ +S L R+ K
Sbjct: 1419 SNAADGMSLERFETIGDSFLKFATTDYLYHTLQDQHEGKLSFARSKEVSNCNLYRLGKKL 1478
Query: 120 GFYKFV 125
G + +
Sbjct: 1479 GIPQLI 1484
>gi|410460645|ref|ZP_11314319.1| ribonuclease III [Bacillus azotoformans LMG 9581]
gi|409926699|gb|EKN63853.1| ribonuclease III [Bacillus azotoformans LMG 9581]
Length = 247
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 124/246 (50%), Gaps = 43/246 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYP 92
+++++N F+N+ LL +A THSSY + S +RLEF+GDA L L +S+Y+F YP
Sbjct: 23 LQDLLNIQFENEHLLVQAFTHSSYVNEHRIKSSEDNERLEFLGDAVLELTVSHYLFNNYP 82
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ G L+ LRAA + L A + F ++V L K +E
Sbjct: 83 SMSEGDLTKLRAAIVCEPSLVNFAHQLSFGEYV------LLGKGEELT------------ 124
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWM------IFRGLLEPIVTLEEL 201
GG + P +LAD+ ES A+Y+D D LQK+ +F +++ L+E+
Sbjct: 125 GGRAR-PALLADVFESFIGALYLDQGLDKVIEFLQKVIYPKISEGVFSHVMDYKSQLQEI 183
Query: 202 QQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
Q+ +L + + Q+ G NR+ ++ V ++G + + + K+ A+ AA+
Sbjct: 184 VQRNGQGSLEYLIIQEKGPA-------HNREFVSRVALNGEILGTGVGKSKKEAEQKAAK 236
Query: 262 EALEKL 267
EAL++L
Sbjct: 237 EALDEL 242
>gi|340372191|ref|XP_003384628.1| PREDICTED: endoribonuclease Dicer-like [Amphimedon queenslandica]
Length = 1530
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 98/189 (51%), Gaps = 34/189 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY--TDSTS-YQRLEFIGDAALGLALSNYVFLAYPQLD 95
++ I Y+FKN+ LL EA+THSSY D T YQRLEF+GDA L ++ +++ + +
Sbjct: 1308 IQGKIEYSFKNELLLIEAMTHSSYHRNDITGCYQRLEFLGDAILDYLVTCHIYQSDSSAE 1367
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY--- 152
PG+++ LR+A + + A++A+ +K + H + L + +K++A+++ Q + ++
Sbjct: 1368 PGEITELRSALVCNSRFAKLAISLNLHKSLCHGSPNLFNDMKKYAQSLRQREKEDMFEEM 1427
Query: 153 ----------------------------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKL 184
I+ PK L+D E++A A+++D +LQ +
Sbjct: 1428 SINDNDSAQAIVESIKDGDFDDDDDDDDDDDIEPPKSLSDCFEALAGAVFIDSGMNLQTV 1487
Query: 185 WMIFRGLLE 193
W F LE
Sbjct: 1488 WEAFSPFLE 1496
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ +ALT DS + +RLE +GD+ L L S Y++ P G+LS R+ ++
Sbjct: 1106 LILQALTPRGANDSINLERLELLGDSFLKLVTSVYLYNLRPNSHEGKLSEARSRRVANIN 1165
Query: 112 LARVAVKHGF 121
L + K G
Sbjct: 1166 LFVLGKKKGI 1175
>gi|154283385|ref|XP_001542488.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410668|gb|EDN06056.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1359
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 121/261 (46%), Gaps = 26/261 (9%)
Query: 24 LTSLPSPEME-------DAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLE 72
L SLPS ++ D + N + Y+F RLL A TH+SY + S YQRLE
Sbjct: 1077 LYSLPSYQIAQADAGQLDLAKQIGNRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLE 1136
Query: 73 FIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL 132
F+GD+ L + Y++ YP DP L+ + A +S + L V VK G +K + + + AL
Sbjct: 1137 FLGDSLLDMVCVEYLYHHYPDRDPQWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNAL 1196
Query: 133 DDKVKEFAEAV-----SQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI 187
++ +AE + D+ + + PK L D++E+ AI+VD +F + +
Sbjct: 1197 FGQITRYAEEIEVAVAESADSPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDF 1256
Query: 188 FRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNI-ASVYVDGSFVAS 246
F+ L+Q + +++ K+ +++ I A+V V FVA
Sbjct: 1257 FQ---------RYLKQYFEDMSIYDAFANKHPTAGEVQMVDSTEPRIYAAVIVHDKFVAQ 1307
Query: 247 ASSEQKEIAKLNAAREALEKL 267
+ AK A+ AL KL
Sbjct: 1308 GIASSVRYAKTKASDAALAKL 1328
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L AV+ Y+FVR
Sbjct: 933 NYERLEFLGDCFLKMATSISLFAMNPDNDEFDFHVKRMCLICNQNLFNTAVRLKLYEFVR 992
>gi|325091272|gb|EGC44582.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H88]
Length = 1432
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 113/239 (47%), Gaps = 19/239 (7%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQL 94
+ N + Y+F RLL A TH+SY + S YQRLEF+GD+ L + Y++ YP
Sbjct: 1172 IGNRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYPDR 1231
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV-----SQEDNT 149
DP L+ + A +S + L V VK G +K + + + AL ++ +AE + D+
Sbjct: 1232 DPQWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYAEEIEVAVAESADSP 1291
Query: 150 AVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVT 209
+ + PK L D++E+ AI+VD +F + + F+ L+Q + ++
Sbjct: 1292 DAWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQ---------RYLKQYFEDMS 1342
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNI-ASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+ K+ +++ I A+V V FVA + AK A+ AL KL
Sbjct: 1343 IYDAFANKHPTAGEVQMVDSTETRIYAAVIVHDKFVAQGIASSVRYAKTKASEAALAKL 1401
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L AV+ Y+FVR
Sbjct: 1006 NYERLEFLGDCFLKMATSISLFAMNPDNDEFDFHVKRMCLICNQNLFNTAVRLKLYEFVR 1065
>gi|195380844|ref|XP_002049171.1| GJ20897 [Drosophila virilis]
gi|194143968|gb|EDW60364.1| GJ20897 [Drosophila virilis]
Length = 1722
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 140/319 (43%), Gaps = 62/319 (19%)
Query: 9 PRATVTDYRLLKEAMLTSLPSPEMEDAVF---YVENIINYNFKNKRLLEEALTHSSYTD- 64
P + D +L M T++ E++ + ++E + Y F+++ L +ALTH S
Sbjct: 1405 PLTQLLDLQLGSARMRTNISQREVDGFLINHQHLEQNLGYTFRDRAYLLQALTHPSNPTN 1464
Query: 65 --STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFY 122
+ YQ LEFIGDA L +S Y+F ++ PGQL+ LR+A ++ LA + V+H F+
Sbjct: 1465 RLTGCYQELEFIGDAILDFLISAYIFEHKTRMTPGQLTDLRSALVNNTTLACICVRHRFH 1524
Query: 123 KFVRHSAAALDDKVKEFAE------------------------------------AVSQE 146
F+ A L + ++ F + +Q+
Sbjct: 1525 FFILAENALLTESIQSFVQFQESQNHRVTNHVRILMEESDVQPEPLDSDDELELAEAAQQ 1584
Query: 147 DNTAVYGG------------SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194
A+ G ++ PK L D++E++ AA+Y+D DL W + L EP
Sbjct: 1585 QKLAINGADAPHVGEFNISHNVDVPKALGDVLEALIAAVYLDCR-DLTTTWQVVYRLFEP 1643
Query: 195 IVTLEELQQQP-QPVTLLFKLCQKNGKQVDIKHWRKNRKNIAS---VYVDGSFVASASSE 250
+ LE + P P+ LF+ K K N + + + + +D +
Sbjct: 1644 EL-LEFSRNVPLNPIRQLFE--HKLAKPTFSPPIMDNNQVMVTCQFICMDKTIKVYGFGN 1700
Query: 251 QKEIAKLNAAREALEKLAQ 269
+ AKL+AA+ AL+KLA+
Sbjct: 1701 NGKQAKLSAAKHALQKLAK 1719
>gi|302318908|ref|NP_001180543.1| dicer-2 [Bombyx mori]
gi|300669733|dbj|BAJ11655.1| DICER-2 [Bombyx mori]
Length = 1677
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 110/206 (53%), Gaps = 24/206 (11%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
VE I+NY FK+ L AL+HSSY ++SY+RLEF+GDA + +++++F +L
Sbjct: 1426 VEKILNYTFKDSTFLLNALSHSSYIRNRLTSSYERLEFLGDAIIDFLVTSHIFENCRELK 1485
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFV-RHSAAALDDKVKEFAEAVSQEDNTAVY-- 152
PG+++ LR+A ++ A VK G +K++ +L+ + +F E + ++ +
Sbjct: 1486 PGEMTDLRSALVNNVTFAAYTVKLGLHKYLCSELNPSLEKAIMKFVEHQIERNHEIEFDV 1545
Query: 153 -----------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEEL 201
+ PKVL+DI E++ A+Y+D +L+ +W + ++ V ++
Sbjct: 1546 LLLISEVDCQVAEYVDVPKVLSDIFEALVGAVYLDSGGNLETVWSVLYKIMH--VEIDSF 1603
Query: 202 QQQ--PQPVTLLFKL---CQKNGKQV 222
++ QPV +L+++ C KQ+
Sbjct: 1604 SKRIPKQPVKILYEMIHACPVFEKQI 1629
>gi|242215871|ref|XP_002473747.1| predicted protein [Postia placenta Mad-698-R]
gi|220727142|gb|EED81071.1| predicted protein [Postia placenta Mad-698-R]
Length = 1725
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 84/145 (57%), Gaps = 5/145 (3%)
Query: 43 INYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+ Y F++ RLL EA+TH S+ +++SYQRLEF+GDA + LA+ Y++ +PQ GQLS
Sbjct: 1123 LGYRFRSGRLLLEAMTHPSFNSFETSSYQRLEFLGDAVVDLAVMRYLYNKFPQATSGQLS 1182
Query: 101 LLRAANISTEKLARVAVKH-GFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK-- 157
R+ + LA VAVK G +K + + L + + + + N + + K
Sbjct: 1183 WARSRAVCAPSLASVAVKRLGLHKLLLVNNVELSIAINNYVPILEELSNEELIHNAWKQD 1242
Query: 158 APKVLADIVESIAAAIYVDIDFDLQ 182
PK ++D++ES+ A+ VD D++ +
Sbjct: 1243 PPKAISDVMESVLGAVLVDSDYNWE 1267
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
LL +ALT S + QRLE +GD+ L L ++F +P GQL LR ++S
Sbjct: 950 LLIQALTIPSANAGFNNQRLETLGDSVLKLTTVVHLFNRFPFRHEGQLDTLRRNSVSNRT 1009
Query: 112 LARVAVKHGFYKFV----------RHSAAALDD 134
L A + G +++ R++ AA DD
Sbjct: 1010 LLARAKEVGLEEYLSCESQSMRVWRYTLAAEDD 1042
>gi|308485595|ref|XP_003104996.1| CRE-DCR-1 protein [Caenorhabditis remanei]
gi|308257317|gb|EFP01270.1| CRE-DCR-1 protein [Caenorhabditis remanei]
Length = 1941
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 115/253 (45%), Gaps = 24/253 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E I Y FK + L +A TH+SY + + YQRLEF+GDA L ++ Y+F Q
Sbjct: 1677 LEERIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDVRQYS 1736
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED-----NTA 150
PG L+ LR+A ++ A +AVK F K L +++F + + + N
Sbjct: 1737 PGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCADRNFDTNFNAE 1796
Query: 151 VY------------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTL 198
+Y ++ PK L D+ ES+A AIY+D +L W + ++ T+
Sbjct: 1797 MYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVLFHMMRS--TI 1854
Query: 199 EELQQQP--QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK 256
+ P P+ L +L + ++ ++ K +V V + + IAK
Sbjct: 1855 DSCCANPPRSPIRELMELEASKARFSKMERILESGKVRVTVDVGNNMRFTGMGRNYRIAK 1914
Query: 257 LNAAREALEKLAQ 269
AA+ AL+ L Q
Sbjct: 1915 ATAAKRALKYLHQ 1927
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
LL ALT S+ D S +R E IGD+ L A ++Y++ G+LS R+ +S
Sbjct: 1427 LLLTALTTSNAADGMSLERFETIGDSFLKFATTDYLYHTLQDQHEGKLSFARSKEVSNCN 1486
Query: 112 LARVAVKHGFYKFV 125
L R+ K G + +
Sbjct: 1487 LYRLGKKLGIPQLI 1500
>gi|158706522|sp|Q4WVE3.3|DCL1_ASPFU RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease dcl1; Includes: RecName:
Full=ATP-dependent helicase dcl1
Length = 1537
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 120/265 (45%), Gaps = 29/265 (10%)
Query: 33 EDAVFYVENIINYNFKNKRLLEEALTHSSYTDS-----TSYQRLEFIGDAALGLALSNYV 87
+D +VE + Y+F RLL A+TH S + YQRLEF+GD+ L + +
Sbjct: 1250 DDLARHVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDL 1309
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
F +P DP LS + A +S + L ++VK GF++ + + L ++ + E + E
Sbjct: 1310 FRRFPDRDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEI--ET 1367
Query: 148 NTAVYGGSI-------KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VT 197
A G++ PK L D+VE+ AI+VD FD Q + F ++P ++
Sbjct: 1368 AQAESQGAVDYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMS 1427
Query: 198 LEELQQQPQPVTLLF----------KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASA 247
+ + P T L C K G+ I +A+V V G+ ++ A
Sbjct: 1428 IYDTFANKHPTTFLHNKLTNEYGCTNYCLKAGELPTIDG--APATVLAAVIVHGNVISEA 1485
Query: 248 SSEQKEIAKLNAAREALEKLAQSMP 272
S AK+ A+ +AL L +P
Sbjct: 1486 RSSSSRYAKITASEKALAVLDGLLP 1510
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L A+K Y+++R
Sbjct: 1088 NYERLEFLGDCFLKMATSIALFSQNPNDDEFDYHVNRMCLICNKNLFNTAIKKQIYRYIR 1147
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI 177
+ F+ + D + G + K+L++ ++ D+
Sbjct: 1148 S---------RGFSRHIWYPDGLTLLHGKDHSTKLLSEGKHALGEKTIADV 1189
>gi|380481939|emb|CCF41547.1| RNase3 domain-containing protein [Colletotrichum higginsianum]
Length = 1588
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 19/217 (8%)
Query: 28 PSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS----TSYQRLEFIGDAALGLAL 83
P+P ++ +++ + Y FK+ LL A H SY + YQRLEF+GDA L +
Sbjct: 1286 PTPMQKELARQIKDKLGYEFKSPALLRSAFKHPSYPRAYENLPDYQRLEFLGDALLDMVC 1345
Query: 84 SNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF---- 139
+++F +P DP L+ + A +S + LA + VK G +K V A+L ++ +F
Sbjct: 1346 VDFLFHKFPDADPQWLTEHKTAMVSNQFLASLCVKLGLHKHVLSGHASLLNQTHDFVVSL 1405
Query: 140 --AEAVSQEDNT---AVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194
A+ + D T A + APK L+D+VE+ AI++D +D + + F + P
Sbjct: 1406 ESAKKDGEADGTFTQAYWINVQHAPKYLSDVVEAYIGAIFIDSGYDYNHVRVFFDTHIRP 1465
Query: 195 IVT---LEELQQQPQPVTLLFKLCQKNGKQVDIKHWR 228
T L + PVT L + Q + WR
Sbjct: 1466 FFTDMALYDSFASRHPVTNLAHILQDG---FGCQEWR 1499
>gi|350646449|emb|CCD58848.1| ribonuclease III, putative [Schistosoma mansoni]
Length = 928
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 88/185 (47%), Gaps = 12/185 (6%)
Query: 31 EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYV 87
E+ F ++ + Y FK LL EA+TH S + +YQRLEF+GD+ LG +SNY+
Sbjct: 726 ELNQRFFQLQEKLGYYFKGIELLAEAMTHQSSINKQYWGNYQRLEFLGDSILGHIISNYL 785
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
F P PG L+ R+ +S LA V V+H Y F+ +L + + Q D
Sbjct: 786 FQKCPNSSPGALTTARSTVVSNINLANVVVEHDIYPFIDFGNCSLKACIDDIKSIHRQTD 845
Query: 148 N--------TAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLE 199
+ T + KVLAD+ ESI AI+VD + + Q I L +T +
Sbjct: 846 SHFERIELITKKVSSGLNV-KVLADVFESILGAIFVDSNGNHQVASSIIHRFLGKTMTTQ 904
Query: 200 ELQQQ 204
L Q
Sbjct: 905 LLCHQ 909
>gi|195425457|ref|XP_002061021.1| GK10670 [Drosophila willistoni]
gi|194157106|gb|EDW72007.1| GK10670 [Drosophila willistoni]
Length = 1720
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 92/203 (45%), Gaps = 47/203 (23%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
Y+E + Y FK++ L +ALTH S + YQ LEFIGDA L +S Y+F ++
Sbjct: 1440 YLERNLGYTFKDRAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFERNIRM 1499
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF--------------- 139
+PGQL+ LR+A ++ LA + V+H F+ F+ L + + F
Sbjct: 1500 NPGQLTDLRSALVNNTTLACICVRHRFHLFILAENTLLTESINSFVDFQEKHMHRVTHHV 1559
Query: 140 -----------------------AEAVSQEDNTAVYGG-----SIKAPKVLADIVESIAA 171
A+ +S D G ++ PK L D+VE++ A
Sbjct: 1560 RILLEENDIQCHNPLDEEDELEMADNLSTNDEPLAKGNLNMSENVDVPKALGDVVEALIA 1619
Query: 172 AIYVDIDFDLQKLWMIFRGLLEP 194
A+Y+D DLQK W + L EP
Sbjct: 1620 AVYLDCK-DLQKTWEVVYRLFEP 1641
>gi|158706452|sp|A2RAF3.2|DCL1_ASPNC RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease dcl1; Includes: RecName:
Full=ATP-dependent helicase dcl1
Length = 1525
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 118/251 (47%), Gaps = 24/251 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQL 94
+E ++Y F+ LL A TH SY + + YQRLEF+GD+ + + +F +P
Sbjct: 1246 IEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDR 1305
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ---EDNTAV 151
DP L+ + A +S + L +AVK G + +++ +A L ++ ++AE + E AV
Sbjct: 1306 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGAV 1365
Query: 152 --YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQ 206
+ + PK L D+VE+ A++VD DF+ + + FR ++P + + +
Sbjct: 1366 DYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKPFFEDMAIYDTFANKH 1425
Query: 207 PVTLL----------FKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK 256
P T L C K G+ I +A+V V +A ++ AK
Sbjct: 1426 PTTFLHNRLTNEFGCVNYCLKAGEMPSIDG--APAGVLAAVIVHDVVIAEGTATSGRYAK 1483
Query: 257 LNAAREALEKL 267
+ A+ +AL L
Sbjct: 1484 VKASEKALAVL 1494
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L AV YK++R
Sbjct: 1078 NYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNAAVDKEIYKYIR 1137
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIK---APKVLADIVESIAAA 172
+ E + + +D++ K A K +AD+ E++ A
Sbjct: 1138 SRGFSRHTWYPEGLKLLQGKDHSRKATTESKHALAEKTIADVCEALIGA 1186
>gi|390598592|gb|EIN07990.1| hypothetical protein PUNSTDRAFT_144457 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 1435
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 122/246 (49%), Gaps = 14/246 (5%)
Query: 35 AVFY-VENIINYNFKNKRLLEEALTHSSYTDST--SYQRLEFIGDAALGLALSNYVFLAY 91
A+F+ V+ ++Y+F N LL EA TH S+ T SYQRLEF+GDA + L + Y++ +
Sbjct: 1123 ALFHRVQEALHYDFHNGDLLIEASTHPSFESGTFGSYQRLEFLGDALIDLVVMQYLYRKF 1182
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKH-GFYKFVRHSAAALDDKVKEFA---EAVSQED 147
P+ PGQLS R+ + ++ +A VAV K + + + L+ + ++ E S ED
Sbjct: 1183 PEGTPGQLSWARSRAVCSQTMAWVAVTQLELNKIMLVNNSELNIALAKYIPILEDFSAED 1242
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP 207
A + PK L+D++ESI A+ +D +D ++ + ++ ++ L P P
Sbjct: 1243 IIA-KSWKLDPPKALSDVLESIMGAVLLDTAYDYERSEAVVEWVMRDVLDALTLDLPPDP 1301
Query: 208 VTLLFKLCQKNG-KQVDIKHWRKNRK-----NIASVYVDGSFVASASSEQKEIAKLNAAR 261
++ L K G ++++ K + N K I+ + D + K AA
Sbjct: 1302 ISQLMISTAKAGCRRINFKKTQSNPKVDRNDGISVIVHDIPICGPIPGSSLSLCKALAAE 1361
Query: 262 EALEKL 267
+AL L
Sbjct: 1362 QALGIL 1367
>gi|317037196|ref|XP_001398755.2| dicer-like protein 1 [Aspergillus niger CBS 513.88]
Length = 1493
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 118/251 (47%), Gaps = 24/251 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQL 94
+E ++Y F+ LL A TH SY + + YQRLEF+GD+ + + +F +P
Sbjct: 1214 IEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDR 1273
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ---EDNTAV 151
DP L+ + A +S + L +AVK G + +++ +A L ++ ++AE + E AV
Sbjct: 1274 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGAV 1333
Query: 152 --YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQ 206
+ + PK L D+VE+ A++VD DF+ + + FR ++P + + +
Sbjct: 1334 DYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKPFFEDMAIYDTFANKH 1393
Query: 207 PVTLL----------FKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK 256
P T L C K G+ I +A+V V +A ++ AK
Sbjct: 1394 PTTFLHNRLTNEFGCVNYCLKAGEMPSIDG--APAGVLAAVIVHDVVIAEGTATSGRYAK 1451
Query: 257 LNAAREALEKL 267
+ A+ +AL L
Sbjct: 1452 VKASEKALAVL 1462
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L AV YK++R
Sbjct: 1046 NYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNAAVDKEIYKYIR 1105
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIK---APKVLADIVESIAAA 172
+ E + + +D++ K A K +AD+ E++ A
Sbjct: 1106 SRGFSRHTWYPEGLKLLQGKDHSRKATTESKHALAEKTIADVCEALIGA 1154
>gi|80979115|gb|ABB54760.1| Dicer-2 [Drosophila simulans]
Length = 1714
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 132/295 (44%), Gaps = 67/295 (22%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
++E+ + Y FK++R L +ALTH SY + SYQ LEFIGDA L +S Y+F ++
Sbjct: 1430 HLEHNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKM 1489
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA-------------- 140
+PG L+ LR+A ++ LA + V+H + F+ L + + +F
Sbjct: 1490 NPGALTDLRSALVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRVTNYV 1549
Query: 141 --------------------------EAVSQEDNTAV-------YGGSIKAPKVLADIVE 167
+ +SQ+ V ++ PK L D++E
Sbjct: 1550 HILLEEADVQPTPLDLDDELELPHANKCISQKAEQGVPPKGEFNISTNVDVPKTLGDVLE 1609
Query: 168 SIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ--QPQPVTLLFKLCQ-KNGKQVDI 224
++ AAIY+D DLQ+ W + L EP ELQ+ + P+ + +L + K+ K V
Sbjct: 1610 ALIAAIYLDCR-DLQRTWEVIFRLFEP-----ELQEFTRNMPINPIRQLIEHKHAKPVFS 1663
Query: 225 KHWRKNRKNIAS---VYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD 276
+ + S ++ S K AKL+AA+ AL+ L++ CD
Sbjct: 1664 SPIMEGDTLMVSCQFTCMEKSIKVYGFGSNKNQAKLSAAKHALQLLSK-----CD 1713
>gi|310798327|gb|EFQ33220.1| RNase3 domain-containing protein [Glomerella graminicola M1.001]
Length = 1532
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 104/224 (46%), Gaps = 19/224 (8%)
Query: 43 INYNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+ Y FK LL A H SY D +YQRLEF+GDA L + +++F +P DP
Sbjct: 1245 LGYEFKYPALLRSAFKHPSYPRAYEDLPNYQRLEFLGDALLDMVCVDFLFKKFPDADPQW 1304
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI-- 156
L+ + A +S + LA + V+ G +K V A+L ++ ++F + A G+
Sbjct: 1305 LTEHKTAMVSNQFLACLCVQLGLHKHVLSGHASLLNQTQDFVGVLECAKQDAAADGTFSQ 1364
Query: 157 -------KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT---LEELQQQPQ 206
+APK L+D+VE+ A++VD +D ++ F + P T L +
Sbjct: 1365 CYWIHVKQAPKFLSDVVEAYIGALFVDSGYDYGQVRGFFDAHIRPFFTDMALYDSFASRH 1424
Query: 207 PVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSE 250
PVT L ++ Q + + + WR +A +G A S
Sbjct: 1425 PVTNLTRILQDD---LGCQEWRLMVSEVAPSVEEGGAAAITGSH 1465
>gi|320037410|gb|EFW19347.1| hypothetical protein CPSG_03731 [Coccidioides posadasii str.
Silveira]
Length = 1465
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 114/251 (45%), Gaps = 24/251 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQL 94
V+ + Y FK +LL A TH SY + + YQRLEF+GDA L +A +++ +P
Sbjct: 1191 VKKKLGYVFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHPDK 1250
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV-----SQEDNT 149
DP L+ + A +S + L VAV+ G + + H + +L ++ + E + D+
Sbjct: 1251 DPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGDSP 1310
Query: 150 AVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQ 206
+ + PK L D+VE+ AI++D +F + + F+ L+ +T+ +
Sbjct: 1311 DAWTLTSDPPKCLPDMVEAYIGAIFIDSNFSFEVVEEFFQKFLKKHFEDMTIYDTYANKH 1370
Query: 207 PVTLLF----------KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK 256
P T L C K G+ + + +A+V V V + AK
Sbjct: 1371 PTTYLHNRLAIDFGCSNYCLKAGEVPYVDG--PGTRVLAAVIVHDEVVTEGVASSSRYAK 1428
Query: 257 LNAAREALEKL 267
L A+ AL KL
Sbjct: 1429 LKASEAALSKL 1439
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R + + L + AV+ Y+F+R
Sbjct: 1024 NYERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLVCNQNLFKTAVRFKLYEFIR 1083
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIK-----APKVLADIVESIAAA 172
+ + + + E ++ G+ + A K +AD+ E++ A
Sbjct: 1084 SQSFS---RRGWYPEGLTLLQGKGQSKGATENKHALADKTIADVCEALIGA 1131
>gi|328770756|gb|EGF80797.1| hypothetical protein BATDEDRAFT_24696 [Batrachochytrium dendrobatidis
JAM81]
Length = 1641
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 20/170 (11%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS-YQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
+E I Y F++K LL EALTHS S +QRLEF+GDA L +++ P L+PG
Sbjct: 1292 IEEQIGYTFRDKTLLWEALTHSGTGKLGSMFQRLEFLGDAVLSYLAMQHLYKITPPLNPG 1351
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV----SQEDNTAV-- 151
LS LRA + + LA V+++ G K++RH+ ++ + F V + E +T +
Sbjct: 1352 GLSKLRAELVCNQFLACVSIQIGLVKYIRHTDMTMEAAIGRFTAWVQGYLASESSTPLPI 1411
Query: 152 -------------YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIF 188
+ APK D+ ES+ A++VD FD+ + +F
Sbjct: 1412 STSATQIASARLFWNKGNTAPKTAGDVYESMLGAVFVDSQFDIHCVQSMF 1461
>gi|303314275|ref|XP_003067146.1| Type III restriction enzyme, res subunit family protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240106814|gb|EER25001.1| Type III restriction enzyme, res subunit family protein [Coccidioides
posadasii C735 delta SOWgp]
Length = 1487
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 114/251 (45%), Gaps = 24/251 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQL 94
V+ + Y FK +LL A TH SY + + YQRLEF+GDA L +A +++ +P
Sbjct: 1213 VKKKLGYVFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHPDK 1272
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV-----SQEDNT 149
DP L+ + A +S + L VAV+ G + + H + +L ++ + E + D+
Sbjct: 1273 DPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGDSP 1332
Query: 150 AVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQ 206
+ + PK L D+VE+ AI++D +F + + F+ L+ +T+ +
Sbjct: 1333 DAWTLTSDPPKCLPDMVEAYIGAIFIDSNFSFEVVEEFFQKFLKKHFEDMTIYDTYANKH 1392
Query: 207 PVTLLF----------KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK 256
P T L C K G+ + + +A+V V V + AK
Sbjct: 1393 PTTYLHNRLAIDFGCSNYCLKAGEVPYVDG--PGTRVLAAVIVHDEVVTEGVASSSRYAK 1450
Query: 257 LNAAREALEKL 267
L A+ AL KL
Sbjct: 1451 LKASEAALSKL 1461
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R + + L + AV+ Y+F+R
Sbjct: 1046 NYERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLVCNQNLFKTAVRFKLYEFIR 1105
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIK-----APKVLADIVESIAAA 172
+ + + + E ++ G+ + A K +AD+ E++ A
Sbjct: 1106 SQSFS---RRGWYPEGLTLLQGKGQSKGATENKHALADKTIADVCEALIGA 1153
>gi|225561826|gb|EEH10106.1| dicer-like protein [Ajellomyces capsulatus G186AR]
Length = 1502
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 121/261 (46%), Gaps = 26/261 (9%)
Query: 24 LTSLPSPEME-------DAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLE 72
L SLPS ++ D + N + Y F RLL A TH+SY + S YQRLE
Sbjct: 1220 LYSLPSYQIAQADAGQLDLAKQIGNRLGYYFTYPRLLRSAFTHASYPSAWSTVPCYQRLE 1279
Query: 73 FIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL 132
F+GD+ L + +++ YP DP L+ + A +S + L VAVK G +K + + + AL
Sbjct: 1280 FLGDSLLDMVCVEHLYHHYPDRDPQWLTEHKMAMVSNKFLGAVAVKLGLHKHLLYISNAL 1339
Query: 133 DDKVKEFAEAV-----SQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI 187
++ +AE + D+ + + PK L D++E+ AI+VD +F + +
Sbjct: 1340 FGQITRYAEEIEVAVAESADSPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDF 1399
Query: 188 FRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNI-ASVYVDGSFVAS 246
F+ L+Q + +++ K+ +++ I A+V V FVA
Sbjct: 1400 FQ---------RYLKQYFEDMSIYDAFANKHPTAGEVQMVDSTEPRIYAAVIVHDKFVAQ 1450
Query: 247 ASSEQKEIAKLNAAREALEKL 267
+ AK A+ AL KL
Sbjct: 1451 GIASSVRYAKTKASEAALAKL 1471
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L AV+ Y+FVR
Sbjct: 1076 NYERLEFLGDCFLKMATSISLFAMNPDNDEFDFHVKRMCLICNQNLFNTAVRLKLYEFVR 1135
>gi|189219126|ref|YP_001939767.1| Ribonuclease III [Methylacidiphilum infernorum V4]
gi|189185984|gb|ACD83169.1| Ribonuclease III [Methylacidiphilum infernorum V4]
Length = 247
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 119/250 (47%), Gaps = 46/250 (18%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY------TDSTSYQRLEFIGDAALGLALSNYVFLAYP 92
+E + Y FKN +LLEEALTH S+ + +QRLEF+GDA LGLA++ +F +P
Sbjct: 6 LEKKMGYAFKNPQLLEEALTHPSFFVESIRVNKGDFQRLEFLGDAVLGLAVTEKLFQLFP 65
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
D G+L+ LRA +S + L +A K++R +E N
Sbjct: 66 SFDEGKLTKLRARLVSRKNLCSLASLLEIGKYLRLGKG--------------EEKNQ--- 108
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVT--- 209
G K P LA+ +ES+ A+Y+D +D K + IF L P+ EL++ P
Sbjct: 109 -GRTK-PSNLANALESVIGALYLDGGWDRAKSF-IFE-LFNPLFM--ELEKDPMRFVEHE 162
Query: 210 ----LLFKLCQKNGKQVDIKHWR--------KNRKNIASVYVDGSFVASASSEQKEIAKL 257
LL + QK G ++ I +R N+ V + S + K+ A+L
Sbjct: 163 NSKGLLQEFLQKKGTELPI--YRIVLESGEAHNKWYEVEVSWKNQVLGKGSGKSKKEAEL 220
Query: 258 NAAREALEKL 267
AA+EA EKL
Sbjct: 221 RAAKEAFEKL 230
>gi|240275432|gb|EER38946.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H143]
Length = 495
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 126/275 (45%), Gaps = 35/275 (12%)
Query: 24 LTSLPSPEME-------DAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLE 72
L SLPS ++ D + N + Y+F RLL A TH+SY + S YQRLE
Sbjct: 131 LYSLPSYQIVQADAGQLDLAKQIGNRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLE 190
Query: 73 FIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL 132
F+GD+ L + Y++ YP DP L+ + A +S + L V VK G +K + + + AL
Sbjct: 191 FLGDSLLDMVCVEYLYHHYPDRDPQWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNAL 250
Query: 133 DDKVKEFAE----AVSQE-DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI 187
++ +AE AV++ D+ + + PK L D++E+ AI+VD +F + +
Sbjct: 251 FGQITRYAEEIEVAVAESADSPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDF 310
Query: 188 FRGLLEPI---VTLEELQQQPQPVTLLF----------KLCQKNG--KQVDIKHWRKNRK 232
F+ L+ +++ + P T C K G + VD R
Sbjct: 311 FQRYLKQYFEDMSVYDAFANKHPTTYFHNRLTIDFGCANYCLKAGEVQMVDSTEPRI--- 367
Query: 233 NIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
A+V V FVA + AK A+ AL KL
Sbjct: 368 -YAAVIVHDKFVAQGIASSVRYAKTKASEAALAKL 401
>gi|389749088|gb|EIM90265.1| hypothetical protein STEHIDRAFT_93138 [Stereum hirsutum FP-91666 SS1]
Length = 1500
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 6/182 (3%)
Query: 43 INYNFKNKRLLEEALTHSSY-TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSL 101
+ Y F+N LL EA+TH S+ T SYQRLEF+GDA + L + +Y++ +P G+LS
Sbjct: 1170 LGYTFRNPELLVEAMTHPSFATGGQSYQRLEFLGDAVIDLTVMSYLYNKFPSATSGKLST 1229
Query: 102 LRAANISTEKLARVAVKH-GFYKFVRHSAAALDDKVKEF---AEAVSQEDNTAVYGGSIK 157
RA +S L+ +AVKH G +K + + L + ++ E S ED + +
Sbjct: 1230 ARARAVSAPVLSSIAVKHLGLHKLMLVNETNLSIAMGKYLPTLEETSYED-MVLNAWAHD 1288
Query: 158 APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQK 217
PK ++D++ES+ A++VD ++ + G++ ++ L PV+ L K
Sbjct: 1289 PPKAISDVLESLLGAVFVDSGWNWDLAQAVTEGVMNDVLELLSPDTPKDPVSELMVWTAK 1348
Query: 218 NG 219
G
Sbjct: 1349 AG 1350
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N LL EA T + + QR E +GD+ L L S +VF YP GQLS+LR IS
Sbjct: 975 NTDLLIEAYTIPAARTGWNNQRFETLGDSVLKLCTSVHVFNKYPWRHEGQLSVLRQVAIS 1034
Query: 109 TEKLARVA 116
L R A
Sbjct: 1035 NMTLLRKA 1042
>gi|317150438|ref|XP_001824024.2| dicer-like protein 1 [Aspergillus oryzae RIB40]
gi|158706453|sp|Q2U6C4.2|DCL1_ASPOR RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease dcl1; Includes: RecName:
Full=ATP-dependent helicase dcl1
Length = 1523
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 117/258 (45%), Gaps = 28/258 (10%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQL 94
VE + Y FK RLL A TH SY + + YQRLEF+GD+ L + + +F YP
Sbjct: 1244 VEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPDK 1303
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
DP L+ + A +S + L +AVK G + +RH + L ++ +AE + +N + G
Sbjct: 1304 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENES--QG 1361
Query: 155 SI-------KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQ 204
++ PK L D+VE+ A +VD DF + + F+ ++ +T+ +
Sbjct: 1362 AVDYWLVTKDPPKCLPDMVEAYLGAAFVDSDFQFRVVEDFFQRHVKSYFHDMTIYDTFAN 1421
Query: 205 PQPVTLL----------FKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEI 254
P T L C K G+ + +A+V V +A ++
Sbjct: 1422 KHPTTFLQNRLTNEYGCTNYCLKAGEIPVVDG--GTVSVLAAVIVHEVVIAEGTASSGRY 1479
Query: 255 AKLNAAREALEKLAQSMP 272
AK+ A+ +AL L P
Sbjct: 1480 AKVKASEKALSVLENMGP 1497
>gi|220928138|ref|YP_002505047.1| ribonuclease III [Clostridium cellulolyticum H10]
gi|219998466|gb|ACL75067.1| ribonuclease III [Clostridium cellulolyticum H10]
Length = 236
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 118/241 (48%), Gaps = 32/241 (13%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYP 92
+E+II Y FKNK ++ A+THSSY + +RLEF+GD+ LGL +S Y+F P
Sbjct: 13 LEDIIGYTFKNKDIIFAAVTHSSYANEKKSRKLKYNERLEFLGDSVLGLTISEYLFQKKP 72
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
L G+LS+ RA + L++ A G K++ L K +E +
Sbjct: 73 NLPEGELSVTRAKIVCENSLSQCATDIGLGKYL------LLGKGEELS------------ 114
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
GG K +L+D E++ A+Y+D F+ K + I+R + + I + E + T L
Sbjct: 115 GGREKIS-LLSDAFEALIGALYIDGGFETAKSF-IYRYMDKIIKSCIEGKLFYDYKTQLQ 172
Query: 213 KLCQKNGKQ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEK 266
+L Q+NG+Q D N+ I V ++G+ K+ A+ NAA+ AL
Sbjct: 173 ELVQQNGEQQITYSVTDQFGPDHNKTFITEVKINGAIQGRGKGHSKKEAEQNAAKNALNN 232
Query: 267 L 267
L
Sbjct: 233 L 233
>gi|56459918|ref|YP_155199.1| RNase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR]
gi|81363596|sp|Q5R106.1|RNC_IDILO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56178928|gb|AAV81650.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina loihiensis L2TR]
Length = 229
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 96/196 (48%), Gaps = 27/196 (13%)
Query: 26 SLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSN 85
SLP P + + +E I+ Y+F+ + LL +A+TH S + ST +RLEF+GD+ LGL ++
Sbjct: 2 SLPKPPLTE----LEKIVGYSFEQQGLLHQAMTHRSAS-STHNERLEFLGDSILGLVIAE 56
Query: 86 YVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ 145
++ +P++ G LS +RAA + LA++ K G F+ L
Sbjct: 57 ALYQKFPKVAEGDLSRMRAAIVCGRSLAKLGKKMGLGDFLSLGQGELKS----------- 105
Query: 146 EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTL-EELQQQ 204
G + +LAD VE+I AIY+D D D + + EP +TL E Q
Sbjct: 106 --------GGYRRESILADAVEAIIGAIYLDSDMD--TIRQVILNWFEPQLTLIEPGTSQ 155
Query: 205 PQPVTLLFKLCQKNGK 220
P T L +L Q K
Sbjct: 156 KDPKTRLQELLQARQK 171
>gi|194880776|ref|XP_001974538.1| GG21041 [Drosophila erecta]
gi|190657725|gb|EDV54938.1| GG21041 [Drosophila erecta]
Length = 1729
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 108/241 (44%), Gaps = 56/241 (23%)
Query: 9 PRATVTDYRLLKEAMLTSLPSPEMEDAV---FYVENIINYNFKNKRLLEEALTHSSYTD- 64
P + D L M ++ S E++ + +++EN + Y FK++ L +ALTH SY
Sbjct: 1411 PLTQLLDLELGGSKMRANVNSTEIDGFLINHYHLENNLGYTFKDRGYLLQALTHPSYPTN 1470
Query: 65 --STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFY 122
+ YQ LEFIGDA L +S Y+F ++PG L+ LR+A ++ LA + V+H +
Sbjct: 1471 RITGCYQELEFIGDAILDFLISVYIFENNTNMNPGALTDLRSALVNNTTLACICVRHRLH 1530
Query: 123 KFVRHSAAALDDKVKEFA------------------------------------------ 140
F+ A L + + +F
Sbjct: 1531 FFILAENAMLAESISKFVHFQESQRHRVTNHVRILLEEADVQPTSLDLDDYLDMTELNNA 1590
Query: 141 -EAVSQEDNTAVYGG------SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLE 193
+++SQE+ G ++ PK L D++E++ AAIY+D DLQ+ W + L +
Sbjct: 1591 LKSISQEEQNDQPRGEFNMSTNVDVPKALGDVLEALIAAIYLDCR-DLQRTWEVIFNLFK 1649
Query: 194 P 194
P
Sbjct: 1650 P 1650
>gi|328772805|gb|EGF82843.1| hypothetical protein BATDEDRAFT_23044 [Batrachochytrium dendrobatidis
JAM81]
Length = 1492
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 93/167 (55%), Gaps = 11/167 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E ++NY F++K +L EALTHSS + S +YQRLEF+GDA L ++ Y++
Sbjct: 1223 IEAVLNYTFQDKSILWEALTHSSSSFSICGLNYQRLEFLGDAVLSFIITKYLYTQLGSSS 1282
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVR----HSAAALDDKVKEFAEAVSQEDNT-- 149
PG +S L++ + + LA V+++ G ++R + +D ++ E +SQ ++
Sbjct: 1283 PGVISHLKSEMVCNQFLACVSIRLGLIDWLRVKKSDTVWIVDAYAQQVIEHLSQPADSIQ 1342
Query: 150 -AVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKL-WMIFRGLLEP 194
+ APK+ D+ E+I AI+VD F ++K+ + L++P
Sbjct: 1343 KIFWAHMTTAPKICGDVYEAILGAIFVDSKFSIEKVDEFVLNSLIKP 1389
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 9/130 (6%)
Query: 47 FKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAAN 106
F N L+ L SS SY+RLE +GD+ L + S ++F P D G L+ R
Sbjct: 1048 FINIETLQTVLVASSTDLPYSYERLEILGDSFLKIHQSLHLFALNPSQDEGWLTTSRMVA 1107
Query: 107 ISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIV 166
+L R A + G + + + K++ D+ K+LAD+
Sbjct: 1108 EQNLELCRRATEVGLQGLILTTRFSR----KQWVPPAKGHDSMQS-----MPKKILADVT 1158
Query: 167 ESIAAAIYVD 176
E+I +D
Sbjct: 1159 EAIIGGCLID 1168
>gi|322704697|gb|EFY96289.1| Dicer-like protein 1 [Metarhizium anisopliae ARSEF 23]
Length = 1476
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 109/218 (50%), Gaps = 18/218 (8%)
Query: 26 SLPSPEMED-AVFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGL 81
++PS +E AV V+ I YNF++ +LL A H SY + +YQRLEF+GDA L +
Sbjct: 1186 TIPSRPIELLAVGKVKASIGYNFRSPKLLRSAFKHPSYPYEPELPNYQRLEFLGDALLDV 1245
Query: 82 ALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE 141
A+ +++F YP DP L+ + A S + + V+ G ++ + + +++ + F E
Sbjct: 1246 AIVDFLFQRYPLADPQWLTEHKMAMASNHFFSFLCVELGLHRHILSTGSSIMGHIAGFVE 1305
Query: 142 AV----SQEDNTAV----YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLE 193
+ SQ ++ + + + PK L+DI+E++ A+Y D +D + F +
Sbjct: 1306 QIEKAKSQTEDGVLQLDFWLNTEHPPKALSDILEAVVGAMYEDSKYDYNSVRNFFTKFIA 1365
Query: 194 PI---VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWR 228
P +TL + PVT L KL Q + WR
Sbjct: 1366 PYFQDMTLYDTYAGGHPVTQLTKLMQDT---FCCRSWR 1400
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 65 STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKF 124
S +Y+RLEF+GDA L +A + +F P + + + R I + L AV G ++
Sbjct: 1036 SKNYERLEFLGDAFLKMATTISLFTLIPNRNEFEYHVERMILICNKNLFNHAVDRGLQEY 1095
Query: 125 VRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK--APKVLADIVESIAAAIYV 175
VR D+ + + V ++ G + A K +AD+ E++ A Y+
Sbjct: 1096 VRSRGF---DRRSWYPDLVLRKGKKHKPVGLTQRLADKSIADVCEALIGAAYM 1145
>gi|449550119|gb|EMD41084.1| hypothetical protein CERSUDRAFT_131598, partial [Ceriporiopsis
subvermispora B]
Length = 1587
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 98/201 (48%), Gaps = 20/201 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
VE I+ F+ LL +ALTH+S + +Y RLEF+GDA L + YV+ + L
Sbjct: 1295 VEGIVGCRFEKPHLLLQALTHASIRGYEVLNYDRLEFLGDAILDFLVIRYVYERHHNLSS 1354
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV----SQEDNTAVY 152
G L+LL+ A +S LA V G +++ H++ ++ + E + +QE+ A
Sbjct: 1355 GGLTLLKVAMVSNHVLAAFCVYCGLWQYALHASPDYAIAIQAYYERINNSRAQEERLAAS 1414
Query: 153 GGSIKA--------PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI----VTLEE 200
G + PK+L+D+VE++ A+YV F + F + P + L+
Sbjct: 1415 EGRLPGQYWHDTEPPKILSDVVEAVLGALYVSDGFSEANIVNFFDNVFRPFYDRHIRLQT 1474
Query: 201 LQQQPQPVTLLFKLCQKNGKQ 221
L Q P+ LF+L Q G Q
Sbjct: 1475 LSQHPK--KTLFELMQAEGCQ 1493
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 68 YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRH 127
Y+RLEF+GDA L S Y F+ P+ + G L R IS + L +V+ G +V+
Sbjct: 983 YERLEFLGDAYLKYLSSTYCFVTMPRKNEGALHYARQRYISNKALRTGSVRLGLPSYVQS 1042
Query: 128 SA 129
A
Sbjct: 1043 KA 1044
>gi|358366696|dbj|GAA83316.1| hypothetical protein AKAW_01431 [Aspergillus kawachii IFO 4308]
Length = 1404
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 117/251 (46%), Gaps = 24/251 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQL 94
VE ++Y F+ LL A TH SY + + YQRLEF+GD+ + + +F YP
Sbjct: 1125 VEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARYPDR 1184
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ---EDNTAV 151
DP L+ + A +S + L +AVK G + +++ +A L ++ ++AE + E +AV
Sbjct: 1185 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESESAV 1244
Query: 152 --YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQ 206
+ + PK L D+VE+ A++VD F+ + + FR ++P + + +
Sbjct: 1245 DYWTVTKDPPKCLPDMVEAYVGAVFVDSGFNFEVIEEFFRDHIKPFFEDMAIYDSFANKH 1304
Query: 207 PVTLL----------FKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK 256
P T L C K G+ I +A+V V +A ++ AK
Sbjct: 1305 PTTFLHNRLTNEFGCMNYCLKAGEMPSIDG--APAGVLAAVIVHDVVIAEGTASSGRYAK 1362
Query: 257 LNAAREALEKL 267
+ A+ AL L
Sbjct: 1363 VKASERALAVL 1373
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L AVK YK++R
Sbjct: 957 NYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNAAVKKEIYKYIR 1016
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIK---APKVLADIVESIAAA 172
+ E + + +D++ K A K +AD+ E++ A
Sbjct: 1017 SRGFSRHTWYPEGLKLLQGKDHSRKATTESKHALAEKTIADVCEALIGA 1065
>gi|238499729|ref|XP_002381099.1| dicer-1, putative [Aspergillus flavus NRRL3357]
gi|220692852|gb|EED49198.1| dicer-1, putative [Aspergillus flavus NRRL3357]
Length = 605
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 122/275 (44%), Gaps = 35/275 (12%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQL 94
VE + Y FK RLL A TH SY + + YQRLEF+GD+ L + + +F YP
Sbjct: 326 VEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPDK 385
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
DP L+ + A S + L +AVK G + +RH + L ++ +AE + +N + G
Sbjct: 386 DPQWLTEHKMAMASNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENES--QG 443
Query: 155 SI-------KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQ 204
++ PK L D+VE+ A +VD DF + + F+ ++ +T+ +
Sbjct: 444 AVDYWLVTKDPPKCLPDMVEAYLGAAFVDSDFQFRVVEDFFQRHVKSYFHDMTIYDTFAN 503
Query: 205 PQPVTLL----------FKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEI 254
P T L C K G+ + +A+V V +A ++
Sbjct: 504 KHPTTFLQNRLTNEYGCTNYCLKAGEIPVVD--GGTVSVLAAVIVHEVVIAEGTASSGRY 561
Query: 255 AKLNAAREALEKLAQSMP------VNCDVCEIFDD 283
AK+ A+ +AL L P +CD C +D
Sbjct: 562 AKVKASEKALSVLENMGPSEFREKYHCD-CRTAND 595
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F+ P D + R I + L A+K Y+++R
Sbjct: 158 NYERLEFLGDCFLKMATSISLFVQNPDDDEFDFHVNRMCLICNKNLFNTALKKELYQYIR 217
>gi|429848709|gb|ELA24159.1| RNase3 domain protein [Colletotrichum gloeosporioides Nara gc5]
Length = 1561
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 106/212 (50%), Gaps = 19/212 (8%)
Query: 28 PSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS----TSYQRLEFIGDAALGLAL 83
P+P D VE + Y FK+ LL A H SY + YQRLEF+GDA L +
Sbjct: 1256 PTPIQRDMAQQVEESMGYKFKSPALLRSAFHHPSYPRAYESLPDYQRLEFLGDALLDMVC 1315
Query: 84 SNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF---- 139
+++F +P DP L+ + A +S + LA ++VK G +K + +A+ + +E+
Sbjct: 1316 VDFLFNKFPNADPQWLTEHKMAMVSNQFLASLSVKLGLHKHILVGTSAMLSQKEEYVSSL 1375
Query: 140 ----AEAVSQEDNTAV---YGGSIK-APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGL 191
AEA S ++ Y ++K +PK L+D++E+ A++VD +D ++ F
Sbjct: 1376 NLAMAEAESGAESGMFSQDYWINVKHSPKYLSDVLEAYVGAVFVDSGYDYNEVRKFFDKH 1435
Query: 192 LEPIVT---LEELQQQPQPVTLLFKLCQKNGK 220
+ P T L + + PVT L L +K K
Sbjct: 1436 IRPFFTDMSLYDSFAKKHPVTRLSHLMEKEFK 1467
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A + +F + P D Q + R I + L AV G ++VR
Sbjct: 1103 NYERLEFLGDCFLKMATTIAIFTSKPDDDEFQYHVQRMLLICNQNLFNKAVDRGLQEYVR 1162
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYV 175
+ + + + + ++ A K +AD+ E++ A Y+
Sbjct: 1163 SQSFDRRSWYPQGLKLMRGKQGQPANKHAL-ADKSIADVCEALIGAAYL 1210
>gi|407923675|gb|EKG16741.1| Ribonuclease III [Macrophomina phaseolina MS6]
Length = 1533
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 9/153 (5%)
Query: 45 YNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
Y F++ +LL A H SY SYQRLEF+GD+ + A ++ +P DP L+
Sbjct: 1233 YRFRSAKLLRSAFMHPSYPFNYEKVPSYQRLEFLGDSLIDTACITWLIYKFPDKDPQWLT 1292
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALD----DKVKEFAEAVSQEDNTAVYGGSI 156
+ A +S + L V VK GF+K +++S + ++ D V E EA + Y ++
Sbjct: 1293 EHKMAMVSNKFLGAVCVKLGFHKHLKYSYSQMEYQIRDYVTELREAERESKGARDYWTTV 1352
Query: 157 KA-PKVLADIVESIAAAIYVDIDFDLQKLWMIF 188
K+ PK L DIVE+ A++VD +++ K+ M F
Sbjct: 1353 KSPPKCLPDIVEAYVGALFVDSEYNFAKVEMFF 1385
>gi|302872013|ref|YP_003840649.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47]
gi|302574872|gb|ADL42663.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47]
Length = 222
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 129/247 (52%), Gaps = 47/247 (19%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E + Y F++K LL+ ALTH S T S Y+RLEF+GDAAL LA+S Y+++ +P+L
Sbjct: 4 IEKALGYKFEDKNLLKLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLYVYFPELSE 63
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ +RAA + ++ L++VA K H +K+++F E S
Sbjct: 64 GELTNIRAAVVCSQTLSKVAEK---LNLKNHIIFGKREKMEKFHENKS------------ 108
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT--------------LEELQ 202
+LAD++E++ AI+++ FD + I LL+P + L+E+
Sbjct: 109 ----ILADVLEALFGAIFIESGFD--TVEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIV 162
Query: 203 QQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262
Q+ +++K C+ ++ K+++ + ++++G V+ K+ A+ +AA +
Sbjct: 163 QREGQKKIVYKDCE----ILEKKYFK------SELFIEGKKVSEGYGTSKKEAQQDAAYK 212
Query: 263 ALEKLAQ 269
L ++ +
Sbjct: 213 FLLEMGE 219
>gi|256077012|ref|XP_002574802.1| ribonuclease III [Schistosoma mansoni]
Length = 907
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 12/163 (7%)
Query: 31 EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYV 87
E+ F ++ + Y FK LL EA+TH S + +YQRLEF+GD+ LG +SNY+
Sbjct: 679 ELNQRFFQLQEKLGYYFKGIELLAEAMTHQSSINKQYWGNYQRLEFLGDSILGHIISNYL 738
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
F P PG L+ R+ +S LA V V+H Y F+ +L + + Q D
Sbjct: 739 FQKCPNSSPGALTTARSTVVSNINLANVVVEHDIYPFIDFGNCSLKACIDDIKSIHRQTD 798
Query: 148 N--------TAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQ 182
+ T + KVLAD+ ESI AI+VD + + Q
Sbjct: 799 SHFERIELITKKVSSGLNV-KVLADVFESILGAIFVDSNGNHQ 840
>gi|332029751|gb|EGI69620.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior]
Length = 1257
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 26/202 (12%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E+ I Y FKN+ L +A TH SYT + YQRLEF+GDA L ++ Y++ L
Sbjct: 1004 LESKIGYKFKNRAFLLQAFTHPSYTANGITECYQRLEFLGDAILDFLITCYIYENDVNLS 1063
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED-------- 147
PG L+ LR+A ++ A ++V+HG + + A L + + F + D
Sbjct: 1064 PGDLTDLRSALVNNITFACLSVRHGLHTALLAYAPKLHEIIDCFVRFQEERDYVVNDELL 1123
Query: 148 ---------NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTL 198
N Y + PKVL D+ ES+ AIY+D +L K+W I + +
Sbjct: 1124 YVLIEEDECNITEY---VDVPKVLGDLFESLIGAIYLDSGKNLTKVWEIIYSFMHKEIDE 1180
Query: 199 EELQQQPQPVTLLFK---LCQK 217
QP+ ++++ +C K
Sbjct: 1181 FSRNIPKQPIRVIYENTDICPK 1202
>gi|395330301|gb|EJF62685.1| hypothetical protein DICSQDRAFT_104190 [Dichomitus squalens LYAD-421
SS1]
Length = 1453
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 119/247 (48%), Gaps = 23/247 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY--TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
++ + Y FK+ LL EA+TH S+ TD +SYQRLEF+GDA + + ++ Y++ +P
Sbjct: 1120 LQETLGYTFKHGHLLLEAITHPSFRSTDCSSYQRLEFLGDAFIDMVVTEYLYRKFPSATS 1179
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE---------D 147
GQLS R+ + A +AVK + H +++ E + A+S+ +
Sbjct: 1180 GQLSWARSRAVCGPAFASIAVK----RLALHKLLLINN--VELSMAISKHVPILEEITDE 1233
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP 207
+ G PK L+D++ES+ A++VD D++ K I +LE ++ P
Sbjct: 1234 EIIINGWKHDPPKALSDVLESVLGALFVDCDYNYDKAAAITEMVLEDLLAALRPDLPKDP 1293
Query: 208 VT-LLFKLCQKNGKQVDIKHWRK----NRKNIASVYVDGSFVASA-SSEQKEIAKLNAAR 261
VT L+ + Q + + + R + SV V + VA ++ +AK AA
Sbjct: 1294 VTELMVWVAQSGCRCISFLKGQSRPEVRRYDCMSVLVHDTIVAGPLAAPNLSMAKGLAAE 1353
Query: 262 EALEKLA 268
A E LA
Sbjct: 1354 RAREVLA 1360
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
LL +A+T S + QRLE GDA L L +++ YP GQL ++ I+
Sbjct: 952 LLVQAITLPSANAGFNNQRLETFGDAVLKLCAVVHLYNRYPHRHEGQLDNMKRTAIANRT 1011
Query: 112 LARVAVKHGF 121
L A++HG
Sbjct: 1012 LLARALEHGL 1021
>gi|146296620|ref|YP_001180391.1| ribonuclease III [Caldicellulosiruptor saccharolyticus DSM 8903]
gi|145410196|gb|ABP67200.1| Ribonuclease III [Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 224
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 122/247 (49%), Gaps = 47/247 (19%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E + Y FKN LL+ ALTH S T D + Y+RLEF+GDA L L +S Y+F +PQL
Sbjct: 4 IEKKLGYRFKNPNLLKLALTHKSATHDDKSCYERLEFLGDAVLELVVSKYLFEHFPQLSE 63
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRA + +E L++VA +++ ++K + F E N +++
Sbjct: 64 GELTNLRATIVCSETLSKVAETLNLKRYI---VFGKNEKKEGF------EGNKSIW---- 110
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV--------------TLEELQ 202
+D++E+I I+++ FD+ + +I LLEP + L+E
Sbjct: 111 ------SDVLEAIFGGIFLESGFDMAEKIVI--NLLEPFIKKAAEGKLFYDYKTKLQEFI 162
Query: 203 QQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIAS-VYVDGSFVASASSEQKEIAKLNAAR 261
Q+ + V + K +D +++ N S +Y+ + ++ K+ A+ AA
Sbjct: 163 QREKNVKI---------KYIDYENFEDNLSRFKSELYIGKNKISEGYGNSKKEAQQEAAL 213
Query: 262 EALEKLA 268
AL+KL
Sbjct: 214 NALKKLG 220
>gi|449295521|gb|EMC91542.1| hypothetical protein BAUCODRAFT_570103 [Baudoinia compniacensis UAMH
10762]
Length = 1569
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 80/151 (52%), Gaps = 9/151 (5%)
Query: 39 VENIINYNFKNKRLLEEALTHSS----YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQL 94
VE Y+FK RLL A H S Y +YQRLEF+GDA L +A Y+F YP
Sbjct: 1258 VEREHPYHFKYPRLLRSAFIHPSQPVMYEKVPNYQRLEFLGDALLDMASIAYLFHRYPDR 1317
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV--- 151
DP L+ + A +S + L V V GF+ +RHS+A L ++ ++A + + A
Sbjct: 1318 DPQWLTEHKMAMVSNKFLGAVCVNVGFHLHLRHSSAILQHQIADYAIELLETKRVAGDAK 1377
Query: 152 -YGGSIK-APKVLADIVESIAAAIYVDIDFD 180
Y ++ PK L DIVE+ A ++D +FD
Sbjct: 1378 DYWTTVSDPPKCLPDIVEAYVGAAFIDSNFD 1408
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEFIGD L A S F+ P + + + R + + L VA + Y++VR
Sbjct: 1083 NYERLEFIGDTFLKTATSISTFIQNPNDNEFEFHVKRMLMLCNQNLFNVAKELKLYEYVR 1142
Query: 127 HSAAALDDKVKEF-----AEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDID 178
A + E + ++++ T+V S+ K +AD+ E++ A YV D
Sbjct: 1143 SIAFSRRLWYPEGLKLLEGKGANKQEETSVIKHSL-GEKTIADVCEALIGAAYVTHD 1198
>gi|195124758|ref|XP_002006854.1| GI21295 [Drosophila mojavensis]
gi|193911922|gb|EDW10789.1| GI21295 [Drosophila mojavensis]
Length = 1728
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 63/320 (19%)
Query: 9 PRATVTDYRLLKEAMLTSLPSPEMEDAVF---YVENIINYNFKNKRLLEEALTHSSYTD- 64
P + D +L M T++ E++ + Y+E + Y F ++ L +ALTH S
Sbjct: 1410 PLTQLLDLQLGGSRMRTNISQHEVDGFLINHQYLEKNLGYTFCDRAYLLQALTHPSNPTN 1469
Query: 65 --STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFY 122
+ YQ LEFIGDA L +S Y+F ++ PGQL+ LR+A ++ LA + V+H F+
Sbjct: 1470 RLTGCYQELEFIGDAILDFLISAYIFEHKTRMTPGQLTDLRSALVNNTTLACICVRHRFH 1529
Query: 123 KFVRHSAAALDDKVKEFAE----------------------------------------- 141
F+ A L + ++ F +
Sbjct: 1530 FFILAENALLSESIQNFVQFQETQNHRVTNHVRILMEEKDVQPEPLDSDEELEMAELAAK 1589
Query: 142 ----AVSQEDNTAV----YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLE 193
A+ + D V ++ PK L D++E++ AA+Y+D DL W + L E
Sbjct: 1590 QAKPAIREADAPKVGEFNISHNVDVPKALGDVLEALIAAVYLDCR-DLNTTWQVVYKLFE 1648
Query: 194 PIVTLEELQQQP-QPVTLLFKLCQKNGKQVDIKHWRKNRKNIAS---VYVDGSFVASASS 249
P + LE + P P+ LF+ K K N + + + + +D +
Sbjct: 1649 PEL-LEFSRNVPLNPIRQLFE--HKLAKPTFSSPVMDNNQVMVTCQFICMDKTIKVYGFG 1705
Query: 250 EQKEIAKLNAAREALEKLAQ 269
+ AKL+AA+ AL+KLA+
Sbjct: 1706 NNGKQAKLSAAKHALQKLAK 1725
>gi|301770225|ref|XP_002920522.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like
[Ailuropoda melanoleuca]
Length = 1931
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 115/257 (44%), Gaps = 25/257 (9%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1671 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1730
Query: 97 GQLSLLRAANISTEKLARVAVKH--------GFYKFVRHSAAALDDKVKEFAEAVSQEDN 148
G L+ LR+A ++ A +AV ++K+ + + L + +F + +++
Sbjct: 1731 GVLTDLRSALVNNTIFASLAVXXXXXXXXXXDYHKYFKAVSPELFHVIDDFVQFQLEKNE 1790
Query: 149 TAVYGGSIK-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195
++ PK + DI ES+A AIY+D L+ +W ++ ++ P+
Sbjct: 1791 MQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPL 1850
Query: 196 VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIA 255
+ PV L ++ + K + + + +V V G IA
Sbjct: 1851 IEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIA 1909
Query: 256 KLNAAREALEKLAQSMP 272
K AAR AL L + P
Sbjct: 1910 KSAAARRALRSLKANQP 1926
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1294 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1353
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1354 NCNLYRLGKKKGL 1366
>gi|376261061|ref|YP_005147781.1| ribonuclease III [Clostridium sp. BNL1100]
gi|373945055|gb|AEY65976.1| ribonuclease III [Clostridium sp. BNL1100]
Length = 236
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 124/253 (49%), Gaps = 32/253 (12%)
Query: 27 LPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALG 80
+ + ++ + +ENII +NFKNK ++ A+THSSY + +RLEF+GD+ LG
Sbjct: 1 MEQTDYDNRISELENIIGHNFKNKDIIFAAITHSSYANEKKAKKLKYNERLEFLGDSVLG 60
Query: 81 LALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA 140
L +S Y+F P L G+LS+ RA + L++ A K++ L K +E +
Sbjct: 61 LTISEYLFQKRPNLPEGELSVTRAKIVCENSLSQCATDISLGKYL------LLGKGEELS 114
Query: 141 EAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEE 200
GG K +L+D E++ A+Y+D F+ K + +++ + + I + E
Sbjct: 115 ------------GGREKIS-LLSDAFEALIGALYIDGGFETAKAF-VYKYMDKIIKSCIE 160
Query: 201 LQQQPQPVTLLFKLCQKNGKQ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEI 254
+ T L +L Q+NG+Q D N+ I V ++G+ K+
Sbjct: 161 GKLFYDYKTQLQELVQQNGEQQISYSVTDQFGPDHNKTFITEVKINGATQGQGKGHSKKE 220
Query: 255 AKLNAAREALEKL 267
A+ NAA++AL L
Sbjct: 221 AEQNAAKDALNNL 233
>gi|222529151|ref|YP_002573033.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725]
gi|222455998|gb|ACM60260.1| ribonuclease III [Caldicellulosiruptor bescii DSM 6725]
Length = 222
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 88/160 (55%), Gaps = 23/160 (14%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E + Y F +K LL ALTH S T S Y+RLEF+GDAAL L +S Y+F+ +P+L
Sbjct: 4 IEKALGYKFMDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELVVSKYLFVHFPELSE 63
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ +RAA + ++ L+++A K H +K+++F E S
Sbjct: 64 GELTNIRAAVVCSQTLSKIAEK---LNLKNHIIFGKREKMEKFHENKS------------ 108
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV 196
+L D+VE+I AI+++ F+ KL I LL+P +
Sbjct: 109 ----ILTDVVEAIFGAIFIESGFE--KLEKIIVNLLKPYI 142
>gi|345571082|gb|EGX53897.1| hypothetical protein AOL_s00004g556 [Arthrobotrys oligospora ATCC
24927]
Length = 1587
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 117/248 (47%), Gaps = 19/248 (7%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS----TSYQRLEFIGDAALGLALSNYVFLAYPQL 94
+E + Y FK RLL A TH S+ Y+RLEF+GDA + +A ++ +P
Sbjct: 1301 IERDMGYKFKYPRLLRSAFTHPSFPTMWEKIPCYERLEFLGDALIDMACVEDLWERFPGK 1360
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ-----EDNT 149
DP L+ + + I+ ++VK F+ +R A ++ V+E+ + + + D+
Sbjct: 1361 DPQWLTEHKMSMINNRFQGALSVKLKFHTHLRAMGAHINSAVQEYVQLIEEARIASNDSV 1420
Query: 150 AVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT---LEELQQQPQ 206
+ + + PKVL DI+E+ AI+VD F+ + FR + P T + +
Sbjct: 1421 DYWIDAKQPPKVLPDILEAYVGAIFVDSGFNYDVVTSFFRTHVRPFFTDMSIFDSFAGNH 1480
Query: 207 PVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYV------DGSFVASASSEQKEIAKLNAA 260
PVT L + G D + + K K+ YV +A + K+ ++ NAA
Sbjct: 1481 PVTHLTTRMTELGCS-DFRIFSKEYKDRDKSYVLSVVIFHDKILAEGKASSKKNSRTNAA 1539
Query: 261 REALEKLA 268
+ +LEKLA
Sbjct: 1540 KHSLEKLA 1547
>gi|312135000|ref|YP_004002338.1| ribonuclease iii [Caldicellulosiruptor owensensis OL]
gi|311775051|gb|ADQ04538.1| ribonuclease III [Caldicellulosiruptor owensensis OL]
Length = 222
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 128/247 (51%), Gaps = 47/247 (19%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E + Y F++K LL ALTH S T S Y+RLEF+GDAAL LA+S Y+++ +P+L
Sbjct: 4 IEKALGYKFEDKNLLRLALTHKSATHSNKNCYERLEFLGDAALELAVSKYLYVYFPELSE 63
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ +RAA + ++ L++VA K H +K+++F E S
Sbjct: 64 GELTNIRAAVVCSQTLSKVAEK---LNLKNHIIFGKREKMEKFYENKS------------ 108
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT--------------LEELQ 202
+LAD++E++ AI+++ FD + I LL+P + L+E+
Sbjct: 109 ----ILADVLEALFGAIFIESGFD--TVEKIIVNLLKPYIQKAVAGKLFYDYKTKLQEIV 162
Query: 203 QQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262
Q+ +++K C+ ++ K+++ + ++++G V+ K+ A+ +AA +
Sbjct: 163 QREGQKKIVYKDCE----ILEKKYFK------SELFIEGKKVSEGYGTSKKEAQQDAAYK 212
Query: 263 ALEKLAQ 269
L ++ +
Sbjct: 213 FLLEMGE 219
>gi|391328911|ref|XP_003738926.1| PREDICTED: endoribonuclease Dicer-like [Metaseiulus occidentalis]
Length = 1347
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 94/188 (50%), Gaps = 26/188 (13%)
Query: 27 LPSPEMEDA----------VFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEF 73
LP P ED + V+ + Y F+N+ L+ EA+TH SY + SY+RLEF
Sbjct: 1152 LPEPLREDKKADVERWRKEILTVQETLGYIFQNELLVLEAITHKSYRYNRLTRSYERLEF 1211
Query: 74 IGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAA--- 130
+GDA + +S Y++ A L+PGQL+ +RA+ +S A + V + + ++H +
Sbjct: 1212 LGDAVIDYLISKYIYTADSDLNPGQLTDVRASLVSNNTFAAIIVDNKLHTVMQHHSPLLL 1271
Query: 131 ALDDKVKEFAEAVSQEDNTAVYGG----------SIKAPKVLADIVESIAAAIYVDIDFD 180
L ++ E+ E + D A G + PK L D++ES+ A+++D D
Sbjct: 1272 KLTNRFVEYRETEKRIDILAHMMGEEDEDLEDLEQVDIPKPLGDLMESLMGAVFLDSGKD 1331
Query: 181 LQKLWMIF 188
L +W +
Sbjct: 1332 LDVVWAVL 1339
>gi|426200573|gb|EKV50497.1| hypothetical protein AGABI2DRAFT_64825 [Agaricus bisporus var.
bisporus H97]
Length = 1717
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 91/163 (55%), Gaps = 5/163 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSS--YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E I Y F+N LL EA+TH S ++ + SYQRLEF+GD+ + + ++ Y++ +P+
Sbjct: 1135 LEKEIGYVFENPELLVEAVTHPSLEFSSTPSYQRLEFLGDSVIKMLVTEYLYHKFPKATS 1194
Query: 97 GQLSLLRAANISTEKLARVAV-KHGFYKFVRHSAAALDDKVKEFAEAV--SQEDNTAVYG 153
QL+L R I + LA +A+ K +K++ ++ L++ + + + + D G
Sbjct: 1195 HQLALPRTKAICSPALAHIAIRKLHIHKYLLQNSIDLNNAINLYVPVLESATADEIVRRG 1254
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV 196
PK ++D ES+ A++VD+ +DL + I L+E I+
Sbjct: 1255 WRYDPPKAISDAFESVVGAVFVDVGYDLDRTGGIVCRLMEDIL 1297
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
I F LL EALT + S QRLE +GDA L + + ++ YP+ GQLS L
Sbjct: 957 IGLPFIPDDLLMEALTLPNVDADFSNQRLETLGDAVLDICTTVHLMFKYPRRHEGQLSTL 1016
Query: 103 RAANISTEKLARVAVKHGFYKFV 125
RA +S + L A +F+
Sbjct: 1017 RAGRVSNKFLVSCARTVELERFI 1039
>gi|449543396|gb|EMD34372.1| hypothetical protein CERSUDRAFT_55073 [Ceriporiopsis subvermispora B]
Length = 1702
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 88/162 (54%), Gaps = 5/162 (3%)
Query: 27 LPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALS 84
LP+ + ++ ++ + FK+ +LL EA+TH S+ ++TSYQRLEF+GDA + L +
Sbjct: 1113 LPAKDASPLFTELQEVLGHQFKHGQLLLEAVTHPSFGSYETTSYQRLEFLGDALIDLVVM 1172
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKH-GFYKFVRHSAAALDDKVKEFAEAV 143
Y++ YP+ GQLS R+ + LA VAV +K + + L + ++ +
Sbjct: 1173 RYLYFKYPRATSGQLSWARSRAVCASALAWVAVNCLELHKMMLVNNVGLSVAIGKYVPIL 1232
Query: 144 SQEDNTAVYGGSIK--APKVLADIVESIAAAIYVDIDFDLQK 183
+ N + K PK ++D++ES+ A+ VD +D +K
Sbjct: 1233 KEISNIDIINNGWKQDPPKAISDVLESVLGAVLVDCGYDFEK 1274
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ +ALT + + Q LE +GDA L L + ++F YP GQL +LR +
Sbjct: 957 LMVQALTLPAAAAGFNNQLLETLGDAVLKLGAAVHLFNKYPHRHEGQLDMLRRTCVCNRT 1016
Query: 112 LARVAVKHGFYKFV 125
L ++HG +++
Sbjct: 1017 LLARGLEHGLEQYL 1030
>gi|443725259|gb|ELU12939.1| hypothetical protein CAPTEDRAFT_223153 [Capitella teleta]
Length = 1651
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 17/172 (9%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E I Y F+++ L +A TH+SY T + YQRLEF+GDA L ++ ++F + P
Sbjct: 1388 EEKICYKFRDRSYLLQAFTHASYHYNTVTDCYQRLEFLGDAILDYVITRHLFEDSEKHSP 1447
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL--------------DDKVKEFAEA 142
G L+ LR+A ++ A +AVK F+K+ R + L +D++ E
Sbjct: 1448 GVLTDLRSALVNNNIFAALAVKWNFHKYFRAISPQLFYVIDKFVTWQKDRNDEINLDEEF 1507
Query: 143 VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194
E++ I+ PK L DI ES+A AIY+D L +W ++ +++P
Sbjct: 1508 GELEEDGEGTEEDIEIPKALGDIFESVAGAIYLDSGMSLDTVWQVYYRMMKP 1559
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++N+ + L+ + LT S+ D + +RLE IGD+ L A++ Y++ YP + G+LS
Sbjct: 1122 DLVNFIGPSPCLILQTLTMSNANDFFNLERLETIGDSFLKFAITVYLYCEYPGIHEGKLS 1181
Query: 101 LLRAANISTEKLARVAVKHGF 121
LR+ +S L ++ K G
Sbjct: 1182 YLRSKQVSNYNLYKLGKKKGL 1202
>gi|168177328|pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
Dicer
Length = 265
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 111/244 (45%), Gaps = 17/244 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 19 EKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPRQHSP 78
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 79 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEXQGXDSEL 138
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK DI ES+A AIY D L+ +W ++ +P++
Sbjct: 139 RRSEEDEEKEEDIEVPKAXGDIFESLAGAIYXDSGXSLEVVWQVYYPXXQPLIEKFSANV 198
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L + + K + + + +V V G IAK AAR A
Sbjct: 199 PRSPVRELLEXEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 257
Query: 264 LEKL 267
L L
Sbjct: 258 LRSL 261
>gi|365902819|ref|ZP_09440642.1| ribonuclease III [Lactobacillus malefermentans KCTC 3548]
Length = 232
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 120/247 (48%), Gaps = 45/247 (18%)
Query: 44 NYN--FKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYPQLD 95
N+N FK++ LL+EALT +SY + Y+R+EF+GDA + +S Y+F YPQL
Sbjct: 12 NFNIVFKDESLLDEALTQASYVNEHPNQNLKFYERIEFLGDAVMQFVVSEYIFKRYPQLP 71
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
G+L+ LRAA ++ E A A + F ++R K +E A A ++
Sbjct: 72 QGRLTRLRAAMVNEESFASFARECHFNDYIRLG------KGEELANARERD--------- 116
Query: 156 IKAPKVLADIVESIAAAIYVD------IDFDLQKLW-----MIFRGLLEPIVTLEELQQQ 204
+L DI ES A+Y+D I F Q ++ F + L+E+ Q+
Sbjct: 117 ----SLLCDIFESFVGAVYMDQGIKKVITFAEQVIYPKLDEGRFDDYFDHKTELQEMVQK 172
Query: 205 PQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 264
PV++ ++L +NG + D R +V V+ + + K+ A+ AA+ AL
Sbjct: 173 NGPVSIDYQLLDENGPEND-------RVFKVAVLVNKVELGVGEAHSKKHAEQRAAKVAL 225
Query: 265 EKLAQSM 271
++L + M
Sbjct: 226 DQLKRKM 232
>gi|339448388|ref|ZP_08651944.1| ribonuclease III [Lactobacillus fructivorans KCTC 3543]
Length = 235
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 121/254 (47%), Gaps = 47/254 (18%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYP 92
+E+ N F ++ LL+EA+T +SY + Y+RLEF+GDA L +S+Y+F +P
Sbjct: 9 LEDKFNIKFNDESLLDEAMTQASYVNEHPGQGLKFYERLEFLGDAVYQLVVSDYIFRRFP 68
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+L G+L+ LRAA ++ +R A + F K++R K +E A A Q D+
Sbjct: 69 ELPQGRLTRLRAAMVNEHSFSRFARECHFDKYIRLG------KGEEKANA-RQRDS---- 117
Query: 153 GGSIKAPKVLADIVESIAAAIYVD-------------IDFDLQKLWMIFRGLLEPIVTLE 199
+L DI ES A+Y+D I L + W F + L+
Sbjct: 118 --------LLCDIFESFIGAVYLDQGMATVKHFCEIVIFPKLDEGW--FDEFFDHKTELQ 167
Query: 200 ELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNA 259
E+ Q+ PV L ++L ++G D RK +V ++G + K+ A+ A
Sbjct: 168 EVVQEDGPVDLDYELVSEDGPDND-------RKFKVAVKINGKEMGVGLGHSKKDAEQKA 220
Query: 260 AREALEKLAQSMPV 273
A++AL +L S +
Sbjct: 221 AKKALNELGVSTSI 234
>gi|348025313|ref|YP_004765117.1| ribonuclease 3 [Megasphaera elsdenii DSM 20460]
gi|341821366|emb|CCC72290.1| ribonuclease 3 [Megasphaera elsdenii DSM 20460]
Length = 238
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 44/239 (18%)
Query: 47 FKNKRLLEEALTHSSYTD----STSY--QRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
F N +L++ALTHSSY + S Y +RLEF+GDA L L + Y+FL YP + G+LS
Sbjct: 21 FHNLLVLDQALTHSSYANENKASHGYYNERLEFLGDAILDLVVGEYLFLHYPNMPEGELS 80
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
RA+ +S LA V K ++ L GG + P
Sbjct: 81 KARASVVSETPLASVCAKFHMGDYILLGKGEL------------------ATGGRTR-PS 121
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPI----------VTLEELQQQPQPV 208
++AD E++ AIY+D ++ + +++ +G L+ + +E QQ P
Sbjct: 122 IMADAFEAVVGAIYIDSSYEEARKFILHQLKGYLDLVKSGHYEKDYKTLFQEYVQQEGPQ 181
Query: 209 TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+ ++LC+ G D + + V V+G + S + K+ A+ +AA AL KL
Sbjct: 182 HIEYELCRSEGPDHDKTFYME-------VKVNGKVLGEGSGKTKKDAEQHAAHTALMKL 233
>gi|405960420|gb|EKC26346.1| Endoribonuclease Dicer [Crassostrea gigas]
Length = 1759
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 14/190 (7%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E I Y F++K L +A TH+SY T + YQRLEF+GDA L ++ +++ +
Sbjct: 1509 LEQKIGYEFRDKSYLLQAFTHASYHYNTVTDCYQRLEFLGDAILDYVITRHLYEDSCKYS 1568
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF-AEAVSQEDNTAVYGG 154
PG L+ LR+A ++ A +AVK F+K+ + + L +++F A +ED +
Sbjct: 1569 PGVLTDLRSALVNNNIFAALAVKWDFHKYFKAISPPLFGVIEKFVARQKEREDEIDLSDD 1628
Query: 155 ----------SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQ 204
++ PK L DI ES+A AIY+D L +W ++ +++P + L
Sbjct: 1629 EGEGEEEEHVELEVPKALGDIFESLAGAIYLDSKMSLDTVWRVYYRIMKPQIDKYLLSIP 1688
Query: 205 PQPVTLLFKL 214
PV L ++
Sbjct: 1689 KSPVRELLEM 1698
>gi|347534362|ref|YP_004841032.1| ribonuclease 3 [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504418|gb|AEN99100.1| Ribonuclease 3 [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 247
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 112/244 (45%), Gaps = 47/244 (19%)
Query: 44 NYNFKNKRLLEEALTHSSYT------DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
N F N+ LL+EA T +SY D Y+RLEF+GDA L +S+Y+F YP++ G
Sbjct: 25 NIKFNNEELLDEAFTQASYVNEHPDQDLKFYERLEFLGDAVYQLVVSDYIFKRYPEMPQG 84
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157
+L+ LRAA ++ +R A + F K++R K +E A G+ K
Sbjct: 85 RLTRLRAAMVNRLSFSRFARECHFDKYIRLG------KGEEKA-------------GARK 125
Query: 158 APKVLADIVESIAAAIYVDIDFD-------------LQKLWMIFRGLLEPIVTLEELQQQ 204
+L DI ES A+Y+D + L + W F + L+E Q
Sbjct: 126 RDSLLCDIFESFIGAVYLDQGIETVKHFCNLVIFPKLDEGW--FNEFFDHKTELQEAVQI 183
Query: 205 PQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 264
PV + +KL +NG D R+ +V+VD + K+ A+ A++ AL
Sbjct: 184 NGPVKIEYKLLDENGPDND-------RQFKVAVFVDDQELGVGEGHSKKNAEQLASKMAL 236
Query: 265 EKLA 268
+KL
Sbjct: 237 DKLG 240
>gi|299821773|ref|ZP_07053661.1| ribonuclease III [Listeria grayi DSM 20601]
gi|299817438|gb|EFI84674.1| ribonuclease III [Listeria grayi DSM 20601]
Length = 230
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 114/245 (46%), Gaps = 49/245 (20%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+ + F+N LL+EA THSSY + +RLEF+GDA L L +S+Y+F YP L
Sbjct: 11 VGFTFENVGLLQEAFTHSSYVNEHRKEKLNDNERLEFLGDAVLELTVSDYLFQKYPNLAE 70
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQL+ +RAA + L A F K++R N G
Sbjct: 71 GQLTKMRAAIVCEPSLVEFAENIHFSKYIRLG-------------------NGEEKAGGR 111
Query: 157 KAPKVLADIVESIAAAIYVD------IDFDLQKLWMIF-----RGLLEPI---VTLEELQ 202
P +LAD+ ES A+Y+D I F L++ +IF LE + L+E+
Sbjct: 112 TRPALLADVFESFIGALYLDNGLKNVIRF-LER--VIFPKIDTGAFLETVDHKTQLQEIV 168
Query: 203 QQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262
Q+ + V + + + +++G ++ A V V+G + K+ A+ NAA+E
Sbjct: 169 QRDRDVLIQYDILEESGPA-------HSKAFEAQVVVNGQMLGRGEGRTKKQAEQNAAKE 221
Query: 263 ALEKL 267
A+ KL
Sbjct: 222 AINKL 226
>gi|307169911|gb|EFN62420.1| Endoribonuclease Dcr-1 [Camponotus floridanus]
Length = 506
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 82/167 (49%), Gaps = 19/167 (11%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E I Y F N+ L +A TH SYT + YQRLEF+GDA L ++ Y++ L
Sbjct: 254 METKIGYKFNNRAFLLQAFTHPSYTPNVITECYQRLEFLGDAILDFLITCYIYETCGNLS 313
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV---- 151
PG L+ LR+A ++ A +AV++G + A L + + F + QE N V
Sbjct: 314 PGHLTDLRSALVNNITFACLAVRYGLDTALLSYAPKLHEAIDRFVK-FQQERNYVVNDEL 372
Query: 152 -----------YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI 187
+ PKVL D+ ES+ AIY+D +L K+W I
Sbjct: 373 LWVLLEEEECNLAEYVDVPKVLGDLFESLIGAIYLDSGKNLTKVWEI 419
>gi|321457594|gb|EFX68677.1| hypothetical protein DAPPUDRAFT_329838 [Daphnia pulex]
Length = 291
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 12/168 (7%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQL 99
ENI++Y +K +L EA TH + S +YQRLE IGDAALG + F+ G +
Sbjct: 88 ENILHYTSNDKEVLLEAFTHGNSMKSQNYQRLELIGDAALGFLSALNFFIKSLTHTSGDI 147
Query: 100 SLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED------------ 147
+ LR+A + + A K+GF++ V++ L ++ +F E V +E+
Sbjct: 148 TKLRSACVCNDTFGVWAAKYGFHEHVQNLPPILLKQLNDFLEVVERENFTFAPFERELAA 207
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195
N + + P LAD+ E++ AI +D + + L ++ + P+
Sbjct: 208 NGQIMATQVAIPSFLADVFEAVEGAIIIDANLSFETLERVYARFMTPV 255
>gi|345494561|ref|XP_001602524.2| PREDICTED: endoribonuclease Dicer [Nasonia vitripennis]
Length = 1450
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 98/200 (49%), Gaps = 19/200 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E + Y F+N+ L +A TH SY + SYQRLEF+GDA L L+ +++ L
Sbjct: 1250 MEERLGYKFRNRAFLLQAFTHPSYMPNRQTASYQRLEFLGDAVLDFLLTIHIYETCGNLS 1309
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV---- 151
PG+L+ LR+A ++ A +AV++G + + A L D + +F + + N +
Sbjct: 1310 PGELTDLRSALVNNITFACLAVRYGLHTALLALAPKLFDLIDKFVK-FQENRNYKIDDEL 1368
Query: 152 -----------YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEE 200
+ PKVL DI ES+ AI++D +L+ +W + L++ + L
Sbjct: 1369 LWVLLEEEECNMAEHVDVPKVLGDIYESVIGAIFLDSGKNLEVVWQVIYNLMKNEIDLFS 1428
Query: 201 LQQQPQPVTLLFKLCQKNGK 220
QP+ ++ + N K
Sbjct: 1429 KNVPKQPIRVIHETQGANPK 1448
>gi|347758995|ref|YP_004866557.1| ribonuclease III [Micavibrio aeruginosavorus ARL-13]
gi|347591513|gb|AEP10555.1| ribonuclease III [Micavibrio aeruginosavorus ARL-13]
Length = 232
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 28/164 (17%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVF 88
+P+M+ A+ +++ +N+ F N LL ALTHSS + +Y+RLEF+GD +GLAL+ ++F
Sbjct: 4 APDMDQAMNDLQDRLNHRFSNPDLLRAALTHSSTGAAVNYERLEFLGDRVMGLALARFLF 63
Query: 89 LAYPQLDPGQLSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEAVSQE 146
+P + G L+ AA +S LARVA + G + H+ E A ++
Sbjct: 64 DIFPHENEGDLARRHAALVSGSTLARVAKGINLGDALHLSHA---------ERAAGGAEN 114
Query: 147 DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLW 185
DN +L+D+VE++ A+Y+D D +Q LW
Sbjct: 115 DN------------ILSDVVEAMIGALYLDAGLDPCMSAIQSLW 146
>gi|322702026|gb|EFY93774.1| Dicer-like protein 1 [Metarhizium acridum CQMa 102]
Length = 1524
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 106/224 (47%), Gaps = 17/224 (7%)
Query: 19 LKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIG 75
+++A T P P A VE I Y F++ +LL A H SY + +YQRLEF+G
Sbjct: 1228 VQQAWQTIPPRPIEVLAADKVEGSIGYKFRSPKLLRSAFKHPSYPYEPELPNYQRLEFLG 1287
Query: 76 DAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDK 135
DA L +A+ +++F YP DP L+ + A S + + V+ G ++ + + +++
Sbjct: 1288 DALLDVAIVDFLFRRYPLADPQWLTEHKMAMASNHFFSFLCVELGLHRHILSTGSSMMGH 1347
Query: 136 VKEFAEAVSQ-----EDNTA---VYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI 187
+ F E + + ED + + PK L+DI+E++ A+Y D +D +
Sbjct: 1348 IAGFVEQIEKAKLQTEDGVLQLDFWLNTEHPPKALSDILEAVVGAMYEDSKYDYNSVRDF 1407
Query: 188 FRGLLEPI---VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWR 228
F + P +TL + PVT L KL Q + WR
Sbjct: 1408 FTKFIAPHFQDMTLYDTYAAGHPVTQLTKLMQDT---FCCRSWR 1448
Score = 37.7 bits (86), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 9/127 (7%)
Query: 55 EALTHS----SYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTE 110
EALT S + +Y+RLEF+GDA L +A + +F P + + + R I +
Sbjct: 1070 EALTKSEEDVDVQSNKNYERLEFLGDAFLKMATTISLFTLIPNKNEFEYHVERMILICNK 1129
Query: 111 KLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED--NTAVYGGSIKAPKVLADIVES 168
L AV G ++VR D+ + + V ++ + V A K +AD+ E+
Sbjct: 1130 NLFNHAVDRGLQEYVRSRGF---DRRSWYPDLVLRKGKKHKPVALTHRLADKSIADVCEA 1186
Query: 169 IAAAIYV 175
+ A Y+
Sbjct: 1187 LIGAAYM 1193
>gi|302896162|ref|XP_003046961.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI
77-13-4]
gi|256727889|gb|EEU41248.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI
77-13-4]
Length = 1452
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 134/294 (45%), Gaps = 49/294 (16%)
Query: 39 VENIINYNFKNKRLLEEALTHSS--YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
V + + Y FK LL A H S Y +YQRLEF+GDA L +A+ + +F +PQ DP
Sbjct: 1157 VADAVGYRFKWPALLRSAFKHPSWPYDPVPNYQRLEFLGDALLDMAIVDNLFQRFPQADP 1216
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA-------EAVSQE--- 146
L+ + A S + L + VK +K + + ++L ++ +A E QE
Sbjct: 1217 QWLTEHKMAMASNQFLGCLCVKLDLHKHLTSTTSSLIGQISSYASELELAEEDARQEAKA 1276
Query: 147 DNTAV----YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLE 199
+ TA+ + + PK AD++E++ A++VD +D + F +EP + L
Sbjct: 1277 NKTAMRKDFWLRASAPPKAFADVMEALVGAMFVDAKYDYTVVRNFFTRFIEPYFEDMALY 1336
Query: 200 ELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKN-----------------IASVYVDGS 242
+ PVT L K Q++ + +WR + +N +A V
Sbjct: 1337 DSFANKHPVTYLSKKMQQD---LGCTNWRVSAENVPCGVEEGIAALTESDVVAVFMVHQK 1393
Query: 243 FVASASSEQKEIAKLNAAREAL----------EKLAQSMPVNCDVCEIFDDIDE 286
VA+A+++ AK+ A+ AL E + +++ +C + DD+++
Sbjct: 1394 VVANATAKSGRYAKIAVAKRALAMLDEHEGDFETMKRALGCDCKPGAVQDDVND 1447
>gi|420495956|ref|ZP_14994520.1| ribonuclease III [Helicobacter pylori Hp P-23]
gi|393112267|gb|EJC12788.1| ribonuclease III [Helicobacter pylori Hp P-23]
Length = 239
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 122/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D ++ VS + + +
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEEIS---NGREK 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G H+++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD----HYKEFE---MALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|383749663|ref|YP_005424766.1| ribonuclease III [Helicobacter pylori ELS37]
gi|380874409|gb|AFF20190.1| ribonuclease III [Helicobacter pylori ELS37]
Length = 239
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 122/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +ST HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVST---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL +S
Sbjct: 229 YQALQKLKES 238
Score = 38.1 bits (87), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 255 AKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIE 314
A L R+ ++KL D+ +F D K L EL + P+Y++
Sbjct: 140 AGLAKVRKIIQKLLNRAYKRLDLEHLFMDY---------KTALQELTQAQFCVIPTYQLL 190
Query: 315 KDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRES 366
K++GP H K+F A+ I ++ T KS+ K+AE A L+ L+ES
Sbjct: 191 KEKGPDHHKEFEMALYIQDK---MYATAKGKSK-KEAEQQCAYQALQKLKES 238
>gi|420418603|ref|ZP_14917695.1| ribonuclease III [Helicobacter pylori NQ4076]
gi|393033429|gb|EJB34492.1| ribonuclease III [Helicobacter pylori NQ4076]
Length = 239
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRAAIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQNKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|126654291|ref|ZP_01726068.1| ribonuclease III [Bacillus sp. B14905]
gi|126589255|gb|EAZ83416.1| ribonuclease III [Bacillus sp. B14905]
Length = 254
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 113/241 (46%), Gaps = 47/241 (19%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+N F NK LL +A THSSY + T +RLEF+GDA L L++S Y+F YP +
Sbjct: 30 LNITFVNKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLFEKYPNMSE 89
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRA+ + L A + GF +FV L K +E G
Sbjct: 90 GELTKLRASIVCEPSLVIFANELGFGRFV------LLGKGEELT-------------GGR 130
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQ 203
+ P +LAD+ ES A+Y+D DLQ + ++ P V L+E+ Q
Sbjct: 131 ERPALLADVFESFVGALYLDQ--DLQTVVSFLERIVFPKVEVGAFSHVMDFKSQLQEMVQ 188
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
Q L +++ +D K NR ++SV ++G + + K+ A+ AA+ A
Sbjct: 189 QTNNGLLHYEI-------IDEKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAAQCA 241
Query: 264 L 264
+
Sbjct: 242 M 242
>gi|148380412|ref|YP_001254953.1| ribonuclease III [Clostridium botulinum A str. ATCC 3502]
gi|148289896|emb|CAL84004.1| putative ribonuclease III [Clostridium botulinum A str. ATCC 3502]
Length = 237
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 115/242 (47%), Gaps = 46/242 (19%)
Query: 47 FKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
FKN++LL+ ALTHSSY + Y+RLEF+GD+ L L +S +++ Y G+L+
Sbjct: 22 FKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDKKEGELTRK 81
Query: 103 RAANISTEKLARVAVKH--GFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
RA + L +A + GFY + + GG +
Sbjct: 82 RAIIVCENSLYEIAKRWDLGFY--------------------LQMSKGEELTGGRERVS- 120
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIV----------TLEELQQQPQPV 208
+LAD VESI AAIY+D D + +++ F+ ++E + TL+E+ QQ +
Sbjct: 121 ILADCVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDL 180
Query: 209 TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268
T+ ++L ++ G R+ +V +D + K+ A+ NAAREAL+ L
Sbjct: 181 TINYELLKQEGPP-------HRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 233
Query: 269 QS 270
S
Sbjct: 234 DS 235
>gi|427394181|ref|ZP_18887683.1| ribonuclease III [Alloiococcus otitis ATCC 51267]
gi|425730169|gb|EKU93012.1| ribonuclease III [Alloiococcus otitis ATCC 51267]
Length = 235
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 120/244 (49%), Gaps = 33/244 (13%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAY 91
++++ + FK++ LL EA THSSY + + +RLEF+GDA + L S Y++ +
Sbjct: 8 HIKSEFDLEFKDESLLLEAFTHSSYANDHHQARHKNLERLEFLGDAVVELCTSAYLYDKF 67
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV 151
P+L GQL+ +RAA++ E LA++A + +F+ L K +E + +
Sbjct: 68 PELPEGQLTRIRAASVRAESLAQLARECDLPQFI------LLGKGEEMMQGRER------ 115
Query: 152 YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLL 211
P +L D+ E+ AI+ D ++ + ++ +L P + ++ T L
Sbjct: 116 -------PALLCDVFEAFTGAIFQDQGYEQARQFL--SQVLFPKIDHDDFSHGMDFKTAL 166
Query: 212 FKLCQKNGK------QVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+L Q+NG+ VD K NR V ++G K+ A+ AA++ALE
Sbjct: 167 QELMQENGEVKIDYDVVDTKGPDHNRTFYVEVKIEGDSYGVGQGNSKKRAQQQAAKKALE 226
Query: 266 KLAQ 269
+L+Q
Sbjct: 227 QLSQ 230
>gi|312984414|ref|ZP_07791749.1| ribonuclease III [Lactobacillus crispatus CTV-05]
gi|423318428|ref|ZP_17296305.1| ribonuclease 3 [Lactobacillus crispatus FB049-03]
gi|423321936|ref|ZP_17299807.1| ribonuclease 3 [Lactobacillus crispatus FB077-07]
gi|310894189|gb|EFQ43276.1| ribonuclease III [Lactobacillus crispatus CTV-05]
gi|405591390|gb|EKB64892.1| ribonuclease 3 [Lactobacillus crispatus FB077-07]
gi|405596152|gb|EKB69509.1| ribonuclease 3 [Lactobacillus crispatus FB049-03]
Length = 229
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 33/235 (14%)
Query: 44 NYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
N F N++LLEEA THSSY++ Y++LEF+GDA L LA+SNYV+L YP+L+ G
Sbjct: 15 NIEFNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAVSNYVYLHYPKLNEG 74
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157
+L+ LR+ + TE + A++ GF D++ N G+
Sbjct: 75 ELTRLRSNIVRTEGFSEFAIECGF-----------QDEI--------HLGNGEEKAGARH 115
Query: 158 APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQK 217
+L D+ E+ A+++D + + + P++ E T L ++ Q+
Sbjct: 116 RKTLLEDVFEAFNGALFLDQ--GMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQEVLQQ 173
Query: 218 NGKQVDIKHWRKNRKNIASVYV-----DGSFVASASSEQKEIAKLNAAREALEKL 267
+G V+I++ + + S +V +G + K+ A+ AA+ AL+KL
Sbjct: 174 DGP-VNIEYTVISESQLPSHFVVELKINGKVESKGEGHNKKAAEQQAAKVALQKL 227
>gi|153930813|ref|YP_001384630.1| ribonuclease III [Clostridium botulinum A str. ATCC 19397]
gi|153937224|ref|YP_001388147.1| ribonuclease III [Clostridium botulinum A str. Hall]
gi|153940610|ref|YP_001391753.1| ribonuclease III [Clostridium botulinum F str. Langeland]
gi|168180664|ref|ZP_02615328.1| ribonuclease III [Clostridium botulinum NCTC 2916]
gi|226949808|ref|YP_002804899.1| ribonuclease III [Clostridium botulinum A2 str. Kyoto]
gi|384462760|ref|YP_005675355.1| ribonuclease III [Clostridium botulinum F str. 230613]
gi|387818676|ref|YP_005679023.1| ribonuclease III [Clostridium botulinum H04402 065]
gi|152926857|gb|ABS32357.1| ribonuclease III [Clostridium botulinum A str. ATCC 19397]
gi|152933138|gb|ABS38637.1| ribonuclease III [Clostridium botulinum A str. Hall]
gi|152936506|gb|ABS42004.1| ribonuclease III [Clostridium botulinum F str. Langeland]
gi|182668630|gb|EDT80609.1| ribonuclease III [Clostridium botulinum NCTC 2916]
gi|226841844|gb|ACO84510.1| ribonuclease III [Clostridium botulinum A2 str. Kyoto]
gi|295319777|gb|ADG00155.1| ribonuclease III [Clostridium botulinum F str. 230613]
gi|322806720|emb|CBZ04289.1| ribonuclease III [Clostridium botulinum H04402 065]
Length = 234
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 115/242 (47%), Gaps = 46/242 (19%)
Query: 47 FKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
FKN++LL+ ALTHSSY + Y+RLEF+GD+ L L +S +++ Y G+L+
Sbjct: 19 FKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDKKEGELTRK 78
Query: 103 RAANISTEKLARVAVKH--GFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
RA + L +A + GFY + + GG +
Sbjct: 79 RAIIVCENSLYEIAKRWDLGFY--------------------LQMSKGEELTGGRERVS- 117
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIV----------TLEELQQQPQPV 208
+LAD VESI AAIY+D D + +++ F+ ++E + TL+E+ QQ +
Sbjct: 118 ILADCVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDL 177
Query: 209 TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268
T+ ++L ++ G R+ +V +D + K+ A+ NAAREAL+ L
Sbjct: 178 TINYELLKQEGPP-------HRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230
Query: 269 QS 270
S
Sbjct: 231 DS 232
>gi|153954021|ref|YP_001394786.1| ribonuclease III [Clostridium kluyveri DSM 555]
gi|219854635|ref|YP_002471757.1| hypothetical protein CKR_1292 [Clostridium kluyveri NBRC 12016]
gi|189043304|sp|A5N807.1|RNC_CLOK5 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|254807246|sp|B9E1G8.1|RNC_CLOK1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|146346902|gb|EDK33438.1| Hypothetical protein CKL_1396 [Clostridium kluyveri DSM 555]
gi|219568359|dbj|BAH06343.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 244
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 119/254 (46%), Gaps = 44/254 (17%)
Query: 32 MEDAVFY--VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSN 85
ME F+ VE +N +F +K L++ ALTHSSY + +R+EF+GD+ L L +S
Sbjct: 1 MEKVNFFEEVEKTLNISFNDKELIDTALTHSSYANGKKGVKFNERMEFLGDSVLQLCISE 60
Query: 86 YVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ 145
Y+FL Y G+L+ R+ + L VA K K+++ S
Sbjct: 61 YLFLIYKSKSEGELTKKRSLIVCENSLYEVAKKWNIGKYIKMSKGE-------------- 106
Query: 146 EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIV------- 196
+ GG + +LA+ VE+I AAIY+D + K ++I F+ ++E +
Sbjct: 107 ----EITGGRERTS-ILANCVEAIIAAIYIDSGYKKTKQFIIDNFKDIIEKAIKNQIVLD 161
Query: 197 ---TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKE 253
L+E+ QQ + + + L + G RK V V + + S K+
Sbjct: 162 YKTNLQEIVQQDGDIHIEYMLIKYEGPP-------HRRKFYTKVCVANNVMGSGVGYTKK 214
Query: 254 IAKLNAAREALEKL 267
++ NAA++AL+KL
Sbjct: 215 ESEQNAAQDALKKL 228
>gi|227878860|ref|ZP_03996766.1| ribonuclease III [Lactobacillus crispatus JV-V01]
gi|256843377|ref|ZP_05548865.1| ribonuclease III [Lactobacillus crispatus 125-2-CHN]
gi|256849801|ref|ZP_05555232.1| double stranded RNA-specific ribonuclease RNase [Lactobacillus
crispatus MV-1A-US]
gi|262046954|ref|ZP_06019914.1| ribonuclease III [Lactobacillus crispatus MV-3A-US]
gi|293381175|ref|ZP_06627183.1| ribonuclease III [Lactobacillus crispatus 214-1]
gi|227861551|gb|EEJ69164.1| ribonuclease III [Lactobacillus crispatus JV-V01]
gi|256614797|gb|EEU19998.1| ribonuclease III [Lactobacillus crispatus 125-2-CHN]
gi|256713290|gb|EEU28280.1| double stranded RNA-specific ribonuclease RNase [Lactobacillus
crispatus MV-1A-US]
gi|260572936|gb|EEX29496.1| ribonuclease III [Lactobacillus crispatus MV-3A-US]
gi|290922215|gb|EFD99209.1| ribonuclease III [Lactobacillus crispatus 214-1]
Length = 229
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 33/235 (14%)
Query: 44 NYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
N F N++LLEEA THSSY++ Y++LEF+GDA L LA+SNYV+L YP+L+ G
Sbjct: 15 NIEFNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAVSNYVYLHYPKLNEG 74
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157
+L+ LR+ + TE + A++ GF D++ N G+
Sbjct: 75 ELTRLRSNIVRTEGFSEFAIECGF-----------QDEI--------HLGNGEEKAGARH 115
Query: 158 APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQK 217
+L D+ E+ A+++D + + + P++ E T L ++ Q+
Sbjct: 116 RKTLLEDVFEAFNGALFLDQ--GMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQEVLQQ 173
Query: 218 NGKQVDIKHWRKNRKNIASVYV-----DGSFVASASSEQKEIAKLNAAREALEKL 267
+G V+I++ + + S +V +G + K+ A+ AA+ AL+KL
Sbjct: 174 DGP-VNIEYTVISESQLPSHFVVELKINGKVESKGEGHNKKAAEQQAAKFALQKL 227
>gi|169827094|ref|YP_001697252.1| ribonuclease 3 [Lysinibacillus sphaericus C3-41]
gi|168991582|gb|ACA39122.1| Ribonuclease 3 [Lysinibacillus sphaericus C3-41]
Length = 254
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 113/241 (46%), Gaps = 47/241 (19%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+N F NK LL +A THSSY + T +RLEF+GDA L L++S Y+F YP +
Sbjct: 30 LNITFINKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLFEKYPNMSE 89
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRA+ + L A + GF +FV L K +E G
Sbjct: 90 GELTKLRASIVCEPSLVIFANELGFGRFV------LLGKGEELT-------------GGR 130
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQ 203
+ P +LAD+ ES A+Y+D DLQ + ++ P V L+E+ Q
Sbjct: 131 ERPALLADVFESFVGALYLDQ--DLQTVVSFLERIVFPKVEVGAFSHVMDFKSQLQEMVQ 188
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
Q L +++ +D K NR ++SV ++G + + K+ A+ AA+ A
Sbjct: 189 QTNNGLLHYEI-------IDEKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAAQCA 241
Query: 264 L 264
+
Sbjct: 242 M 242
>gi|319649604|ref|ZP_08003760.1| rnc protein [Bacillus sp. 2_A_57_CT2]
gi|317398766|gb|EFV79448.1| rnc protein [Bacillus sp. 2_A_57_CT2]
Length = 246
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYPQLDP 96
I F+N++LL++A THSSY + +RLEF+GDA L L +S +++L YP +
Sbjct: 26 IGIQFENEKLLKQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTVSKFLYLKYPMMSE 85
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRAA + L A H+ + F V + GG
Sbjct: 86 GELTKLRAAVVCEPSLVSFA----------HALS--------FGSLVLLGKGEEMTGGRT 127
Query: 157 KAPKVLADIVESIAAAIYVDIDFD-----LQKLWM------IFRGLLEPIVTLEELQQQP 205
+ P +LAD+ E+ A+Y+D D L+K+ F +++ L+EL Q+
Sbjct: 128 R-PALLADVFEAFIGALYLDKGLDTVVGFLEKVVFPKIDSGAFSHVMDFKSQLQELVQRD 186
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
T+ +K+ Q+ G NR+ +++V ++G + + + K+ A+ +AA+ ALE
Sbjct: 187 GAGTIEYKILQEKGPA-------HNREFVSTVSLNGRELGTGTGRSKKEAEQHAAQMALE 239
Query: 266 KL 267
L
Sbjct: 240 VL 241
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K +L EL + YKI +++GP+H+++F+S V + +G TG +S+ K+AE
Sbjct: 176 KSQLQELVQRDGAGTIEYKILQEKGPAHNREFVSTVSL---NGRELGTGTGRSK-KEAEQ 231
Query: 354 SAASMMLRALR 364
AA M L L+
Sbjct: 232 HAAQMALEVLK 242
>gi|170754285|ref|YP_001781997.1| ribonuclease III [Clostridium botulinum B1 str. Okra]
gi|429243878|ref|ZP_19207362.1| ribonuclease III [Clostridium botulinum CFSAN001628]
gi|169119497|gb|ACA43333.1| ribonuclease III [Clostridium botulinum B1 str. Okra]
gi|428759084|gb|EKX81473.1| ribonuclease III [Clostridium botulinum CFSAN001628]
Length = 234
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 115/242 (47%), Gaps = 46/242 (19%)
Query: 47 FKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
FKN++LL+ ALTHSSY + Y+RLEF+GD+ L L +S +++ Y G+L+
Sbjct: 19 FKNEKLLDVALTHSSYANGKRNIKYYERLEFLGDSVLQLIISEHLYQKYEDKKEGELTRK 78
Query: 103 RAANISTEKLARVAVKH--GFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
RA + L +A + GFY + + GG +
Sbjct: 79 RAIIVCENSLYEIAKRWDLGFY--------------------LQMSKGEELTGGRERVS- 117
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIV----------TLEELQQQPQPV 208
+LAD VESI AAIY+D D + +++ F+ ++E + TL+E+ QQ +
Sbjct: 118 ILADCVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDL 177
Query: 209 TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268
T+ ++L ++ G R+ +V +D + K+ A+ NAAREAL+ L
Sbjct: 178 TINYELLKQEGPP-------HRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLG 230
Query: 269 QS 270
S
Sbjct: 231 DS 232
>gi|290968970|ref|ZP_06560505.1| ribonuclease III [Megasphaera genomosp. type_1 str. 28L]
gi|335049107|ref|ZP_08542118.1| ribonuclease III [Megasphaera sp. UPII 199-6]
gi|290780926|gb|EFD93519.1| ribonuclease III [Megasphaera genomosp. type_1 str. 28L]
gi|333764552|gb|EGL41946.1| ribonuclease III [Megasphaera sp. UPII 199-6]
Length = 236
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 111/242 (45%), Gaps = 50/242 (20%)
Query: 47 FKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
F+N LL++ALTHSSY + +RLEF+GDA L L + Y+FL YPQ+ G+LS
Sbjct: 21 FQNLLLLDQALTHSSYANEHKIRHGYFNERLEFLGDAILDLVVGEYLFLQYPQMQEGELS 80
Query: 101 LLRAANISTEKLARV--AVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
RA+ +S LA V A G Y + H + G +
Sbjct: 81 KARASIVSEAPLAAVCSAFHMGKYLLLGHG---------------------EISSGGRER 119
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLE-------------ELQQQP 205
P +LAD E++ A+Y+D ++ + + I R L + + +E E Q+
Sbjct: 120 PGILADAFEAVVGAVYMDASYEEARKF-ILRHLRDYLALVENGHYDQDYKTLFQEYIQRD 178
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+ + LC+++G D + V DG + + K++A+ +AAR+AL
Sbjct: 179 GEHHITYSLCKESGPDHD-------KTFTMQVAADGKVLGEGCGKSKKMAEQHAARQALL 231
Query: 266 KL 267
+L
Sbjct: 232 RL 233
>gi|146324173|ref|XP_753471.2| RNA helicase/RNAse III [Aspergillus fumigatus Af293]
gi|129558032|gb|EAL91433.2| RNA helicase/RNAse III, putative [Aspergillus fumigatus Af293]
Length = 1546
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 117/258 (45%), Gaps = 27/258 (10%)
Query: 33 EDAVFYVENIINYNFKNKRLLEEALTHSSYTDS-----TSYQRLEFIGDAALGLALSNYV 87
+D +VE + Y+F RLL A+TH S + YQRLEF+GD+ L + +
Sbjct: 1271 DDLARHVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDL 1330
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
F +P DP LS + A +S + L ++VK GF++ + + L ++ + E + E
Sbjct: 1331 FRRFPDRDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEI--ET 1388
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQ 204
A G+ L D+VE+ AI+VD FD Q + F ++P +++ +
Sbjct: 1389 AQAESQGA-----CLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSIYDTFAN 1443
Query: 205 PQPVTLLF----------KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEI 254
P T L C K G+ I +A+V V G+ ++ A S
Sbjct: 1444 KHPTTFLHNKLTNEYGCTNYCLKAGELPTIDG--APATVLAAVIVHGNVISEARSSSSRY 1501
Query: 255 AKLNAAREALEKLAQSMP 272
AK+ A+ +AL L +P
Sbjct: 1502 AKITASEKALAVLDGLLP 1519
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L A+K Y+++R
Sbjct: 1109 NYERLEFLGDCFLKMATSIALFSQNPNDDEFDYHVNRMCLICNKNLFNTAIKKQIYRYIR 1168
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI 177
+ F+ + D + G + K+L++ ++ D+
Sbjct: 1169 S---------RGFSRHIWYPDGLTLLHGKDHSTKLLSEGKHALGEKTIADV 1210
>gi|299536778|ref|ZP_07050086.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1]
gi|424737014|ref|ZP_18165470.1| ribonuclease 3 [Lysinibacillus fusiformis ZB2]
gi|298727790|gb|EFI68357.1| ribonuclease 3 [Lysinibacillus fusiformis ZC1]
gi|422948846|gb|EKU43222.1| ribonuclease 3 [Lysinibacillus fusiformis ZB2]
Length = 254
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 113/241 (46%), Gaps = 47/241 (19%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+N F NK LL +A THSSY + T +RLEF+GDA L L++S Y+F YP +
Sbjct: 30 LNITFINKNLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLFEKYPNMSE 89
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRA+ + L A + GF +FV L K +E G
Sbjct: 90 GELTKLRASIVCEPSLVIFANELGFGRFV------LLGKGEELT-------------GGR 130
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQ 203
+ P +LAD+ ES A+Y+D DLQ + ++ P V L+E+ Q
Sbjct: 131 ERPALLADVFESFVGALYLDQ--DLQTVVSFLERVVFPKVEVGAFSHVMDFKSQLQEMVQ 188
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
Q L +++ +D K NR ++SV ++G + + K+ A+ AA+ A
Sbjct: 189 QTNNGLLHYEI-------IDEKGPAHNRTFVSSVLLNGQELGIGRGKSKKEAEQQAAQCA 241
Query: 264 L 264
+
Sbjct: 242 M 242
>gi|385226898|ref|YP_005786822.1| ribonuclease III [Helicobacter pylori SNT49]
gi|344331811|gb|AEN16841.1| ribonuclease III [Helicobacter pylori SNT49]
Length = 239
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 122/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +ST HGF K + A AL D + S E+ V G K
Sbjct: 81 LSKLRASIVST---------HGFTKLAK--AIALQD----YLRVSSSEE---VSNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|365839119|ref|ZP_09380367.1| ribonuclease III [Anaeroglobus geminatus F0357]
gi|364565515|gb|EHM43236.1| ribonuclease III [Anaeroglobus geminatus F0357]
Length = 238
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 113/239 (47%), Gaps = 44/239 (18%)
Query: 47 FKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
F N LL++ALTHSSYT+ S +RLEF+GDA L + + Y+F YP + G L+
Sbjct: 21 FHNWHLLDQALTHSSYTNEDRTHHSIHNERLEFLGDAVLDMVVGEYLFRRYPDMPEGNLT 80
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
RA+ +S E LA V F+ A+ GG +
Sbjct: 81 KARASVVSEEPLACVCASFHMGSFLLLGKG------------------EALTGGRTR-NS 121
Query: 161 VLADIVESIAAAIYVDI------DFDLQK----LWMIFRGLL--EPIVTLEELQQQPQPV 208
++AD E++ A+Y+D DF L++ L ++ +G+ + +EL Q+
Sbjct: 122 IMADAFEAVVGAVYIDCSYTAARDFILKQLDKYLQLVDKGIYGKDYKTYFQELLQRDGAQ 181
Query: 209 TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+ ++LC++ G N+ V V+G + + S + K+ A+ +AA +ALEK+
Sbjct: 182 DIRYRLCREEGPD-------HNKTFFMEVTVNGEIMGTGSGKTKKSAEQHAAYKALEKM 233
>gi|310658889|ref|YP_003936610.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [[Clostridium]
sticklandii]
gi|308825667|emb|CBH21705.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [[Clostridium]
sticklandii]
Length = 229
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 129/255 (50%), Gaps = 48/255 (18%)
Query: 32 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSN 85
M+ + ++ INY F++ +LL+EALTHSSY++ + + +RLEF+GD+ LGL +SN
Sbjct: 1 MKSKSYELQKKINYEFQDLKLLKEALTHSSYSNEYKKIKNRNNERLEFLGDSILGLIISN 60
Query: 86 YVFLAYPQLDPGQLSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEAV 143
Y+F +L G+L+ +RAA + L +A + G Y ++
Sbjct: 61 YLFRLKKELPEGELTKIRAAIVCERSLKDIAKSIHLGEYLYLGKG--------------- 105
Query: 144 SQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD------IDFDLQKLWMIFRGLLEPIVT 197
E++T GG + +LAD E++ AAIY+D DF L+ + I ++ +
Sbjct: 106 --EEST---GGRTR-DSILADATEALIAAIYLDGGFRKATDFVLEHMGDIISQAIQGKIM 159
Query: 198 ------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQ 251
L+EL Q+ +++KL + G D K ++ N V++ + + +
Sbjct: 160 RDYKTQLQELIQKDNKENIIYKLVDQLGPDHD-KTFKMN------VFLGEKLIGTGIGKS 212
Query: 252 KEIAKLNAAREALEK 266
K+ A+ AA++A+EK
Sbjct: 213 KKEAEQEAAKDAMEK 227
>gi|421712978|ref|ZP_16152309.1| ribonuclease III [Helicobacter pylori R32b]
gi|407216344|gb|EKE86181.1| ribonuclease III [Helicobacter pylori R32b]
Length = 239
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +ST HGF K + A AL D ++ VS + + +
Sbjct: 81 LSKLRASIVST---------HGFTKLAK--AIALQDYLR-----VSSSEEIS---NGREK 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
AL+KL ++
Sbjct: 229 YYALQKLKEA 238
>gi|313124070|ref|YP_004034329.1| ribonuclease iii [Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|312280633|gb|ADQ61352.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ND02]
Length = 231
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 114/238 (47%), Gaps = 45/238 (18%)
Query: 47 FKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
FK+ RLLEEA THSSY + +Y++LEF+GDA L +S+Y++ + L+ G+L+
Sbjct: 18 FKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTVSDYLYRHFQHLNEGELT 77
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
LR+ + TE ++VA+ GF KE V +E G K
Sbjct: 78 RLRSNIVRTEGFSKVALDCGF--------------KKEIKLGVGEEK-----AGGRKRKA 118
Query: 161 VLADIVESIAAAIYVDID------FDLQKLW-MIFRGLLEPI----VTLEELQQQPQPVT 209
+L D+ E+ A+++D F Q ++ +I G P L+EL QQ VT
Sbjct: 119 LLEDVFEAFNGALFLDQGIEAVEKFLRQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVT 178
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+ +++ ++ + H+ V VDG +AS K+ A+ +AA ALE L
Sbjct: 179 IEYRVLNESQQP---PHFE------VEVLVDGKKLASGEGRNKKKAEQDAASHALEHL 227
>gi|121807817|sp|Q2VF19.1|DCL1_CRYPA RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease DCL-1; Includes: RecName:
Full=ATP-dependent helicase DCL-1
gi|77632774|gb|ABB00356.1| dicer-like protein 1 [Cryphonectria parasitica]
Length = 1548
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 122/294 (41%), Gaps = 47/294 (15%)
Query: 39 VENIINYNFKNKRLLEEALTHSS----YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQL 94
+ Y FK+ R+L A H S + YQRLEF+GDA +A +Y+F P
Sbjct: 1251 IHEATGYQFKHPRVLRSAFRHPSRPYVFDKVPHYQRLEFLGDALFDMACVDYLFHIAPDE 1310
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV--- 151
P L+ + A +S + L +AV GF+KF+ H A++ ++ E+ +++ A
Sbjct: 1311 GPQWLTEHKMAMVSNQFLGCLAVSLGFHKFILHHHASIGSQIHEYVTEITEARRAAEDAA 1370
Query: 152 --------------YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI-- 195
+ + + PK + D++E+ AI+VD +D + F + P
Sbjct: 1371 EAAGKPRSAYSRDYWVEAPQPPKCIPDVLEAYVGAIFVDSKYDYSVVQQFFHAHVLPFFA 1430
Query: 196 -VTLEELQQQPQPVTLLFKL------CQKNGKQV-------DIKHWRKNRKNIASVYVDG 241
+ + + PVT + C G D + +A + + G
Sbjct: 1431 SMRMYDTFANKHPVTFFTQYVFETFGCHAYGLHAEEMPVKDDTGLVTGKTQVVAGILLHG 1490
Query: 242 SFVASASSEQKEIAKLNAAREALEKLAQSMP---------VNCDVCEIFDDIDE 286
V A + AK+ AAR+AL+KL +SM +C E +DI E
Sbjct: 1491 QVVEGAVRDSGRYAKIAAARKALDKL-RSMTRQEFLDAYKCDCKPGEAAEDISE 1543
>gi|159126799|gb|EDP51915.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus A1163]
Length = 1546
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 117/258 (45%), Gaps = 27/258 (10%)
Query: 33 EDAVFYVENIINYNFKNKRLLEEALTHSSYTDS-----TSYQRLEFIGDAALGLALSNYV 87
+D +VE + Y+F RLL A+TH S + YQRLEF+GD+ L + +
Sbjct: 1271 DDLARHVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDL 1330
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
F +P DP LS + A +S + L ++VK GF++ + + L ++ + E + E
Sbjct: 1331 FRRFPDRDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEI--ET 1388
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQ 204
A G+ L D+VE+ AI+VD FD Q + F ++P +++ +
Sbjct: 1389 AQAESQGA-----CLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSIYDTFAN 1443
Query: 205 PQPVTLLF----------KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEI 254
P T L C K G+ I +A+V V G+ ++ A S
Sbjct: 1444 KHPTTFLHNKLTNEYGCTNYCLKAGELPTIDG--APATVLAAVIVHGNVISEARSSSSRY 1501
Query: 255 AKLNAAREALEKLAQSMP 272
AK+ A+ +AL L +P
Sbjct: 1502 AKIKASEKALAVLDGLLP 1519
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L A+K Y+++R
Sbjct: 1109 NYERLEFLGDCFLKMATSIALFSQNPNDDEFDYHVNRMCLICNKNLFNTAIKKQIYRYIR 1168
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI 177
+ F+ + D + G + K+L++ ++ D+
Sbjct: 1169 S---------RGFSRHIWYPDGLTLLHGKDHSTKLLSEGKHALGEKTIADV 1210
>gi|414453403|gb|AFX00003.1| Dicer [Mnemiopsis leidyi]
Length = 2002
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 98/197 (49%), Gaps = 38/197 (19%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTD-STSYQRLEFIGDAALGLALSNYVFLAYP 92
D + VE I Y FK L EALTH+S+T+ YQRLEF+GDA L + + ++ +P
Sbjct: 1721 DNLRTVEKAIGYEFKEPLYLLEALTHASFTEIDACYQRLEFLGDAVLDVLMVFRIYEDHP 1780
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL------------DDKVKEFA 140
+ D GQ++ L ++ + L++V K +K + + +A L D+++++
Sbjct: 1781 EYDQGQMTDLLSSLVCNTTLSKVCTKLQLHKSLLYDSAELFNVLAGFFMNFEKDQLEQWC 1840
Query: 141 EAVSQE--------------------DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD 180
+ +S E DN V +APK+L D+VES+ AIY+D D D
Sbjct: 1841 KDLSLERVFVDTVDCDTPDKIPILNLDNKVV-----QAPKLLGDLVESVIGAIYLDCDED 1895
Query: 181 LQKLWMIFRGLLEPIVT 197
+ +++ + EP T
Sbjct: 1896 ILRVYEVIWPWFEPFYT 1912
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
++TH S + + +RLEF+GD L + Y + P G LS R+ IS + LA
Sbjct: 1466 HSITHKSCGEEYNLERLEFLGDRFLKFVSTLYYYRTMPDKHEGWLSRYRSEMISNQNLAV 1525
Query: 115 VAVK 118
+ K
Sbjct: 1526 RSCK 1529
>gi|420453494|ref|ZP_14952331.1| ribonuclease III [Helicobacter pylori Hp A-8]
gi|393069982|gb|EJB70775.1| ribonuclease III [Helicobacter pylori Hp A-8]
Length = 239
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 122/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D ++ VS + + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQDHLR-----VSSSEE--ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|262368562|ref|ZP_06061891.1| dsRNA-specific ribonuclease [Acinetobacter johnsonii SH046]
gi|381195725|ref|ZP_09903067.1| ribonuclease III [Acinetobacter lwoffii WJ10621]
gi|262316240|gb|EEY97278.1| dsRNA-specific ribonuclease [Acinetobacter johnsonii SH046]
Length = 230
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 105/234 (44%), Gaps = 27/234 (11%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
I Y FK LL+ ALTH S + +Y+RLEF+GD+ LG+ ++NY++ AYP + G+L+ +
Sbjct: 17 IGYQFKQPELLQLALTHRSVSHKYNYERLEFLGDSLLGMIIANYLYKAYPTENEGRLTRM 76
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
RA + E L ++A + + S L G +L
Sbjct: 77 RATLVRQEALGKIANDLKLSQSLILSTGELKS-------------------GGHHRESIL 117
Query: 163 ADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-LEELQQQPQPVTLLFKLCQKNGKQ 221
AD VESI AIYVD DL L I EP + +E Q P + L + Q K
Sbjct: 118 ADTVESIIGAIYVDCS-DLTVLEPIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKA 176
Query: 222 ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
VDI+ N+ VDG V + + A+ AA + L+ L Q
Sbjct: 177 LPVYDVVDIQGDAPNQHFKVECKVDGLSVVNGEGTSRRFAEQAAAADILKLLEQ 230
>gi|281339672|gb|EFB15256.1| hypothetical protein PANDA_009266 [Ailuropoda melanoleuca]
Length = 1917
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 111/246 (45%), Gaps = 18/246 (7%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1672 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1731
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA----------EAVSQE 146
G L+ LR+A ++ A +A ++K V + D +F + +
Sbjct: 1732 GVLTDLRSALVNNTIFASLA----YFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRS 1787
Query: 147 DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQ 206
+ I+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1788 EEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRS 1847
Query: 207 PVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEK 266
PV L ++ + K + + + +V V G IAK AAR AL
Sbjct: 1848 PVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRALRS 1906
Query: 267 LAQSMP 272
L + P
Sbjct: 1907 LKANQP 1912
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1295 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1354
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1355 NCNLYRLGKKKGL 1367
>gi|409046535|gb|EKM56015.1| hypothetical protein PHACADRAFT_122116 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1496
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 11/174 (6%)
Query: 30 PEMEDAVFY--VENIINYNFKNKRLLEEALTHSSYTDST--SYQRLEFIGDAALGLALSN 85
PE V + V+ I+ Y FK+ LL EA+TH S+ T SYQRLEF+GDA + L +
Sbjct: 1101 PETPVPVMFHEVQEILGYEFKSGHLLIEAVTHPSFRSPTNSSYQRLEFMGDALIDLVVMR 1160
Query: 86 YVFLAYPQLDPGQLSLLRAANISTEKLARVAVK-HGFYKFVRHSAAALDDKVKEFAEAV- 143
Y++ +P GQLS R+ + LA +AV G ++ + + L + ++ +
Sbjct: 1161 YLYNKFPTATSGQLSWARSRAVCAPALAHIAVNVLGLHRPLLINNIELSMAISKYVPILQ 1220
Query: 144 -SQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI----FRGLL 192
+ E+ G PK ++D++ESI A+ VD ++ +K +I RGLL
Sbjct: 1221 ETSEEEIIHSGWKHDPPKAISDVLESILGAVLVDTHYNFEKTAVIAENALRGLL 1274
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ +ALT S + QRLE +GD+ L L ++F +P GQL +LR ++S
Sbjct: 945 LMIQALTLPSANAGFNNQRLETLGDSVLKLCTVVHLFNRFPHRHEGQLDILRRNSVSNRT 1004
Query: 112 L 112
L
Sbjct: 1005 L 1005
>gi|356571230|ref|XP_003553782.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max]
Length = 756
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 104/189 (55%), Gaps = 10/189 (5%)
Query: 43 INYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYP--QLDPG 97
+NY+FK+ LL EALTHSS T Y+RLEF+GDA L ++ + + Y +
Sbjct: 515 LNYSFKDPYLLVEALTHSSGKRPEIRTCYERLEFLGDAVLDYVITMHFYKEYSNDKFSAE 574
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157
+ +R+ +++ E A A+K + + + + + + + E V + +G ++
Sbjct: 575 FFTNMRSISVNNECYALSAIKAKLDEHIL-CDSVVKNNIAQTMEGVKNLSLESTFGWELE 633
Query: 158 A--PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLC 215
+VLAD++ESIA AI+VD + + ++ + LLEP+VT E ++ P++ L +LC
Sbjct: 634 TYFCQVLADVIESIAGAIFVDSGYKKEVVFQSIKPLLEPLVTPETARR--HPISELHELC 691
Query: 216 QKNGKQVDI 224
QK G ++ +
Sbjct: 692 QKKGYKMKV 700
>gi|15615052|ref|NP_243355.1| ribonuclease III [Bacillus halodurans C-125]
gi|20139354|sp|Q9KA05.1|RNC_BACHD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|10175109|dbj|BAB06208.1| ribonuclease III [Bacillus halodurans C-125]
Length = 263
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 43/244 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQ------RLEFIGDAALGLALSNYVFLAYPQLDP 96
+N F NK+LL +A THSSY + Q RLEF+GDA L LA+S Y++ A+ Q+
Sbjct: 42 LNLTFANKKLLVQAFTHSSYVNEHRIQSCKDNERLEFLGDAVLELAVSQYLYKAFEQMSE 101
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G ++ LRA+ + LA++A + F + V L K +E G
Sbjct: 102 GDMTKLRASIVCEPSLAQLAEELHFGELV------LLGKGEEMT-------------GGR 142
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQP 205
K P +LAD+ ES A+Y+D D L++ F +++ L+E Q+
Sbjct: 143 KRPALLADVFESFVGALYLDQGMDAVYLFLERTIYPKISEGAFSHMMDFKSQLQEFIQRD 202
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+ +++ Q+ G NR+ ++ V ++ + + K+ A+ +AA++AL
Sbjct: 203 NLGHIHYEIVQERGPA-------HNREFVSEVVLNNETLGVGTGRSKKEAEQHAAQQALI 255
Query: 266 KLAQ 269
L+Q
Sbjct: 256 TLSQ 259
>gi|420408798|ref|ZP_14907953.1| ribonuclease III [Helicobacter pylori NQ4216]
gi|393022960|gb|EJB24075.1| ribonuclease III [Helicobacter pylori NQ4216]
Length = 239
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIMQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|300811711|ref|ZP_07092185.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300497287|gb|EFK32335.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 231
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 114/238 (47%), Gaps = 45/238 (18%)
Query: 47 FKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
FK+ RLLEEA THSSY + +Y++LEF+GDA L +S+Y++ + L+ G+L+
Sbjct: 18 FKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTVSDYLYRHFQHLNEGELT 77
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
LR+ + TE ++VA+ GF +E V +E G K
Sbjct: 78 RLRSNIVRTEGFSKVALDCGF--------------KEEINLGVGEEK-----AGGRKRKA 118
Query: 161 VLADIVESIAAAIYVDID------FDLQKLW-MIFRGLLEPI----VTLEELQQQPQPVT 209
+L D+ E+ A+++D F Q ++ +I G P L+EL QQ VT
Sbjct: 119 LLEDVFEAFNGALFLDQGIEAVEKFSSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVT 178
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+ +++ ++ + H+ V VDG +AS K+ A+ +AA ALE L
Sbjct: 179 IEYRVLNESQQP---PHFE------VEVLVDGKKLASGEGRNKKKAEQDAASHALEHL 227
>gi|170761820|ref|YP_001787766.1| ribonuclease III [Clostridium botulinum A3 str. Loch Maree]
gi|169408809|gb|ACA57220.1| ribonuclease III [Clostridium botulinum A3 str. Loch Maree]
Length = 234
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 115/242 (47%), Gaps = 46/242 (19%)
Query: 47 FKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
FKN++LL+ ALTHSSY + Y+RLEF+GD+ L L +S +++ Y G+L+
Sbjct: 19 FKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDKKEGELTRK 78
Query: 103 RAANISTEKLARVAVKH--GFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
RA + L +A + GFY + + GG +
Sbjct: 79 RAIIVCENSLYEIAKRWDLGFY--------------------LQMSKGEELTGGRERVS- 117
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIV----------TLEELQQQPQPV 208
+LAD VESI AAIY+D D + +++ F+ ++E + TL+E+ QQ +
Sbjct: 118 ILADCVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDL 177
Query: 209 TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268
T+ ++L ++ G R+ +V +D + K+ A+ NAAREAL+ L
Sbjct: 178 TINYELLKQEGPP-------HRRRFFTNVTIDNEIRGTGIGYSKKEAEQNAAREALKNLG 230
Query: 269 QS 270
+
Sbjct: 231 DN 232
>gi|400595165|gb|EJP62972.1| RNase3 domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 1465
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 14/170 (8%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
V II Y F++ LL A TH+SY + SYQ LEF+GDA L + + +++F P P
Sbjct: 1182 VAAIIGYRFRSPLLLRSAFTHASYKAEEIPSYQTLEFLGDALLDMVIVDHLFRTRPHAGP 1241
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS------------ 144
L+ + + S + L + V+ G ++ + + AA+ VK F E V+
Sbjct: 1242 QALTESKMSVCSNQFLGCLCVELGLHRELLTADAAVPGHVKAFEEKVAYLREQAAGTGAS 1301
Query: 145 QEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194
N A + + + PK LAD+VE++ A++VD +DL + F+ ++P
Sbjct: 1302 AATNKAYWTLATRPPKALADVVEALIGAMFVDARYDLSVVANFFQRFVQP 1351
>gi|420448680|ref|ZP_14947560.1| ribonuclease III [Helicobacter pylori Hp H-44]
gi|420499772|ref|ZP_14998326.1| ribonuclease III [Helicobacter pylori Hp P-26]
gi|393066034|gb|EJB66862.1| ribonuclease III [Helicobacter pylori Hp H-44]
gi|393149752|gb|EJC50061.1| ribonuclease III [Helicobacter pylori Hp P-26]
Length = 239
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|367045744|ref|XP_003653252.1| hypothetical protein THITE_2048914 [Thielavia terrestris NRRL 8126]
gi|347000514|gb|AEO66916.1| hypothetical protein THITE_2048914 [Thielavia terrestris NRRL 8126]
Length = 1591
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 27/210 (12%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS----TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+ Y FK+ RLL A H +Y SYQRLEF+GDA L +A ++F +P DP
Sbjct: 1282 MGYAFKHPRLLRSAFQHPTYPSMYERLPSYQRLEFLGDALLDMASVEFLFHRFPGADPQW 1341
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA----EAV-SQEDNTAVYG 153
L+ + A +S + L +AV+ GF++ + + + AL ++ E+ EA+ S ++ A +G
Sbjct: 1342 LTEHKMAMVSNQFLGCLAVELGFHRALTYCSPALQREIGEYVAEMEEALQSAREDAARHG 1401
Query: 154 ------------GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTL 198
+ PK L D VE+ A++VD ++D ++ F + P + L
Sbjct: 1402 RREDEYSRDYWVDCSRPPKCLPDTVEAYVGAVFVDSEYDFGRVRDFFARHVRPFFEDMRL 1461
Query: 199 EELQQQPQPVTLLFKLCQKNGKQVDIKHWR 228
+ PVT L + Q+ + D WR
Sbjct: 1462 YDTFANKHPVTFLAGVMQQRLRCGD---WR 1488
>gi|420410198|ref|ZP_14909341.1| ribonuclease III [Helicobacter pylori NQ4200]
gi|420442141|ref|ZP_14941081.1| ribonuclease III [Helicobacter pylori Hp H-36]
gi|420477590|ref|ZP_14976245.1| ribonuclease III [Helicobacter pylori Hp H-23]
gi|393028511|gb|EJB29597.1| ribonuclease III [Helicobacter pylori NQ4200]
gi|393058631|gb|EJB59519.1| ribonuclease III [Helicobacter pylori Hp H-36]
gi|393092269|gb|EJB92890.1| ribonuclease III [Helicobacter pylori Hp H-23]
Length = 239
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|344204974|ref|YP_004790116.1| ribonuclease III [Mycoplasma putrefaciens KS1]
gi|343956897|gb|AEM68612.1| ribonuclease III [Mycoplasma putrefaciens KS1]
Length = 230
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 23/143 (16%)
Query: 48 KNKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLR 103
KN L +EALTH+SY++ +YQR+EF+GDA L + +S ++F YP+L G+L+ LR
Sbjct: 16 KNSALFDEALTHNSYSNEHRLRYTYQRMEFLGDALLQMYVSRFLFFNYPKLSEGELTKLR 75
Query: 104 AANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLA 163
A ++ E L++VA + + VR L K + P +LA
Sbjct: 76 ANSVREESLSQVAKEINLGQLVRLGQGELKTK-------------------GFEKPSILA 116
Query: 164 DIVESIAAAIYVDIDFDLQKLWM 186
D+ E++ AAIY+D ++ W+
Sbjct: 117 DVFEALTAAIYLDQGEEILTSWL 139
>gi|384891043|ref|YP_005765176.1| Ribonuclease III [Helicobacter pylori 908]
gi|385223716|ref|YP_005783642.1| Ribonuclease III [Helicobacter pylori 2017]
gi|385231567|ref|YP_005791486.1| Ribonuclease III [Helicobacter pylori 2018]
gi|307637352|gb|ADN79802.1| Ribonuclease III [Helicobacter pylori 908]
gi|325995944|gb|ADZ51349.1| Ribonuclease III [Helicobacter pylori 2018]
gi|325997538|gb|ADZ49746.1| Ribonuclease III [Helicobacter pylori 2017]
Length = 239
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLHVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|380706515|gb|AFD97515.1| dicer, partial [Hymenolepis microstoma]
Length = 1897
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 95/208 (45%), Gaps = 54/208 (25%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD-----------------STSYQRLEFIGDAALGL 81
+EN I Y FKN+RLL EALTHS+ D + Y+RLEF+GDA L
Sbjct: 1607 LENTIGYRFKNRRLLIEALTHSTCRDLHSNPSVNNTPSSVFFGNGGYERLEFLGDAVLDY 1666
Query: 82 ALSNYVFLA-----YPQLDPGQLSLLRAANISTEKLARVAVKH----------------G 120
++ +F + +L PG L+ LR+A ++ +AV H G
Sbjct: 1667 TVTRVLFESTDGETVRELSPGGLTDLRSALVNNAVFGALAVTHCGLHAYLRGTAPYLTEG 1726
Query: 121 FYKFVRH----SAAALDDK---------VKEFAEAVSQEDNTAVYGGS---IKAPKVLAD 164
F+RH S +L+ K V +A +Q D+ AV + + PK L D
Sbjct: 1727 TSAFLRHIRNVSRGSLNSKRLLTPDSNTVARLNDAENQADSGAVRPSNEMEAEVPKALGD 1786
Query: 165 IVESIAAAIYVDIDFDLQKLWMIFRGLL 192
+ ES+A A+++D L LW IF LL
Sbjct: 1787 VFESLAGAVFLDSGLCLNTLWRIFFPLL 1814
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+EN I Y ++ ++LT + D + +RLE IGD+ L A++ Y++L YP G
Sbjct: 1404 LENRILYR-PGPAMILQSLTRLAAGDFINMERLETIGDSFLKFAVTTYLYLKYPDAQEGS 1462
Query: 99 LSLLRAANISTEKLARVAV 117
LSL R+ + L R
Sbjct: 1463 LSLFRSHVVENSNLYRFGC 1481
>gi|420506499|ref|ZP_15005014.1| ribonuclease III [Helicobacter pylori Hp P-74]
gi|393116004|gb|EJC16514.1| ribonuclease III [Helicobacter pylori Hp P-74]
Length = 239
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D ++ VS + + +
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEEIS---NGREK 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|321468043|gb|EFX79030.1| hypothetical protein DAPPUDRAFT_319984 [Daphnia pulex]
Length = 488
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 12/177 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQL 99
ENI++Y +K +L EA TH + S +YQRLE IGDAALG + F G +
Sbjct: 88 ENILHYTSNDKEVLLEAFTHGNSMKSQNYQRLELIGDAALGFLSALNFFKKSLTHTSGDI 147
Query: 100 SLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED------------ 147
+ LR+A + + A K+GF++ V++ L ++ +F E V +E+
Sbjct: 148 TKLRSACVCNDTFGVWAAKYGFHEHVQNLPPILLKQLNDFLEVVERENFTFAPFERELAA 207
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQ 204
N + + P LAD+ E++ AI +D + + L ++ + P+ L Q
Sbjct: 208 NGQIMATQVAIPSFLADVFEAVEGAIIIDANLSFETLERVYARFMTPVYDSPPLSPQ 264
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 35 AVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAAL 79
AV E I+NY+F K +L EALT+ + S +YQRLE IGDA
Sbjct: 329 AVKAFEEILNYSFNYKEVLLEALTYGNSIRSLNYQRLEVIGDAPF 373
>gi|260892849|ref|YP_003238946.1| ribonuclease III [Ammonifex degensii KC4]
gi|260864990|gb|ACX52096.1| ribonuclease III [Ammonifex degensii KC4]
Length = 235
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 117/248 (47%), Gaps = 46/248 (18%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAALGLALSNYVFLAYPQL 94
+++ + ++K ++LL ALTH SY QRLEF+GD+ L L +S+Y++ +P+
Sbjct: 6 LKDKLGISWKEEKLLRLALTHPSYAYEHPGVEHNQRLEFLGDSVLSLVVSDYLYRTFPEK 65
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
G+L+ LRAA + LARVA + G A L + +E + G
Sbjct: 66 SEGELTRLRAAVVCEASLARVAEELGI------GEALLLGRGEEKS-------------G 106
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT--------------LEE 200
K P +LAD E++ AIY+D ++ + + LL P++ L+E
Sbjct: 107 GRKRPSLLADAFEALLGAIYLDQGLEVASAFALH--LLRPVLQDVLEGRVERDYKTELQE 164
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q+ P +++++ Q+ G ++ + VY G + K+ A+ AA
Sbjct: 165 LLQKGSPEKIVYEVLQEEGPD-------HAKRFLVGVYYQGKCLGRGEGRSKKEAEQRAA 217
Query: 261 REALEKLA 268
REA KL+
Sbjct: 218 REAWLKLS 225
>gi|210134869|ref|YP_002301308.1| ribonuclease III [Helicobacter pylori P12]
gi|226741371|sp|B6JLQ0.1|RNC_HELP2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|210132837|gb|ACJ07828.1| ribonuclease III [Helicobacter pylori P12]
Length = 239
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|420484013|ref|ZP_14982639.1| ribonuclease III [Helicobacter pylori Hp P-3]
gi|420514282|ref|ZP_15012755.1| ribonuclease III [Helicobacter pylori Hp P-3b]
gi|420519618|ref|ZP_15018060.1| ribonuclease III [Helicobacter pylori Hp H-5b]
gi|393100880|gb|EJC01453.1| ribonuclease III [Helicobacter pylori Hp P-3]
gi|393126682|gb|EJC27130.1| ribonuclease III [Helicobacter pylori Hp H-5b]
gi|393158745|gb|EJC59005.1| ribonuclease III [Helicobacter pylori Hp P-3b]
Length = 239
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 122/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D ++ VS + + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEE--ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|420457000|ref|ZP_14955819.1| ribonuclease III [Helicobacter pylori Hp A-16]
gi|393074398|gb|EJB75158.1| ribonuclease III [Helicobacter pylori Hp A-16]
Length = 239
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLHVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|228992577|ref|ZP_04152504.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
gi|228998625|ref|ZP_04158212.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
gi|229006125|ref|ZP_04163813.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
gi|228755201|gb|EEM04558.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
gi|228761093|gb|EEM10052.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
gi|228767211|gb|EEM15847.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
Length = 245
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 115/246 (46%), Gaps = 47/246 (19%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I F +++LL +A THSSY + +RLEF+GDA L L +S Y+F YP +
Sbjct: 26 IGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSE 85
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRAA + L R A + F V L K +E G
Sbjct: 86 GELTKLRAAVVCEPSLVRFANELSFGNLV------LLGKGEEMT-------------GGR 126
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-------------LEELQQ 203
+ P +LAD+ E+ A+Y+D L+ +W + ++ P + L+EL Q
Sbjct: 127 ERPALLADVFEAFIGALYLDQ--GLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQ 184
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
+ + +++ Q+ G NR+ ++ V ++G + S + K+ A+ AA EA
Sbjct: 185 RDGSGNIEYQILQEKGPA-------HNREFVSRVTLNGVALGLGSGKSKKEAEQQAASEA 237
Query: 264 LEKLAQ 269
L+KL +
Sbjct: 238 LKKLKE 243
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K +L EL + Y+I +++GP+H+++F+S V T +GV G KS+ K+AE
Sbjct: 176 KSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRV---TLNGVALGLGSGKSK-KEAEQ 231
Query: 354 SAASMMLRALREST 367
AAS L+ L+E +
Sbjct: 232 QAASEALKKLKEQS 245
>gi|167751472|ref|ZP_02423599.1| hypothetical protein EUBSIR_02468 [Eubacterium siraeum DSM 15702]
gi|167655280|gb|EDR99409.1| ribonuclease III [Eubacterium siraeum DSM 15702]
gi|291557094|emb|CBL34211.1| RNAse III [Eubacterium siraeum V10Sc8a]
Length = 226
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 124/241 (51%), Gaps = 41/241 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E II Y FKN LL+EALTHSSYT+ S +RLEF+GD+ L + +S ++F L
Sbjct: 4 LEQIIGYTFKNPELLKEALTHSSYTNGKHLRSNERLEFLGDSVLSIVVSEHLFENLTNLP 63
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
GQL+ +RA+ V ++ Y F R +D + ++ E++T G
Sbjct: 64 EGQLTKIRAS---------VVCENALYPFAR----KID--LGKYIFLGKGEEHT----GG 104
Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWMI-FRGLLEPIVT-----------LEELQQ 203
+LAD E++ AAIY+D F+ + +++ F L+ + T L+E+ Q
Sbjct: 105 RDRHSILADAFEALIAAIYLDGGFEAARSFILPFIPPLDKLSTGKFLLGDYKTVLQEIIQ 164
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
Q + +++ ++G+ N++ A+V ++G + + + K+ A+ +AA+EA
Sbjct: 165 QNPEERVTYEISDESGQA-------HNKQFTANVLLNGQIIGTGKGKSKKEAEQSAAKEA 217
Query: 264 L 264
+
Sbjct: 218 I 218
>gi|332981630|ref|YP_004463071.1| ribonuclease III [Mahella australiensis 50-1 BON]
gi|332699308|gb|AEE96249.1| ribonuclease III [Mahella australiensis 50-1 BON]
Length = 228
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 115/245 (46%), Gaps = 46/245 (18%)
Query: 41 NIINYNFKNKRLLEEALTHSSYT--DSTSY--QRLEFIGDAALGLALSNYVFLAYPQLDP 96
+++ Y F + L+EALTHSSY Y +RLE +GD+ L + +++Y+F+ YP+L
Sbjct: 9 DLLGYRFNDINKLDEALTHSSYAYEHGLDYYNERLELLGDSVLNIIITDYLFVTYPELSE 68
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G LS LR+ +S + L +VA ++ S E +S D
Sbjct: 69 GNLSKLRSNIVSEKPLYKVAAAMNLGSYLLLSR----------GEKLSHGD--------- 109
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV--------------TLEELQ 202
P LAD VE+I A+Y+D FD K++++ LL PI+ L+E
Sbjct: 110 MRPSTLADTVEAIIGAVYLDGGFDAAKVFVL--SLLAPIIEETAAISNFNDYKSELQERL 167
Query: 203 QQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262
Q + +++ ++ G D + A V VDG V S K+ A+ AA++
Sbjct: 168 QIDGYSDIKYEIIREEGPDHD-------KMFFAEVKVDGKPVGRGSGRSKKDAEQKAAQQ 220
Query: 263 ALEKL 267
AL +L
Sbjct: 221 ALSEL 225
>gi|420487360|ref|ZP_14985964.1| ribonuclease III [Helicobacter pylori Hp P-8]
gi|420521143|ref|ZP_15019574.1| ribonuclease III [Helicobacter pylori Hp P-8b]
gi|393101937|gb|EJC02503.1| ribonuclease III [Helicobacter pylori Hp P-8]
gi|393127730|gb|EJC28175.1| ribonuclease III [Helicobacter pylori Hp P-8b]
Length = 239
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVCKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|421710165|ref|ZP_16149522.1| ribonuclease III [Helicobacter pylori R018c]
gi|421723442|ref|ZP_16162696.1| ribonuclease III [Helicobacter pylori R056a]
gi|407210356|gb|EKE80235.1| ribonuclease III [Helicobacter pylori R018c]
gi|407224465|gb|EKE94241.1| ribonuclease III [Helicobacter pylori R056a]
Length = 239
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|376336566|gb|AFB32888.1| hypothetical protein 0_6448_02, partial [Abies alba]
Length = 150
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
G KAPKVL DIVESIA AI++D D K+W +F+ LL+P+VT E L PV L +
Sbjct: 6 GDFKAPKVLGDIVESIAGAIFLDKVLDTTKVWEVFQPLLQPMVTPETLPM--HPVRELQE 63
Query: 214 LCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 264
CQ+ + ++ K R VYVDG + A + QK++A+ AAR AL
Sbjct: 64 RCQQQAEGLEYKASRTGNMATVEVYVDGVQIGFAQNPQKKMAQKLAARNAL 114
>gi|327355811|gb|EGE84668.1| hypothetical protein BDDG_07613 [Ajellomyces dermatitidis ATCC 18188]
Length = 1509
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 115/254 (45%), Gaps = 28/254 (11%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+ Y F+ RLL A TH+S+ + S YQRLEF+GD+ L + Y++ YP DP
Sbjct: 1229 LGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYPDRDPQW 1288
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV-----SQEDNTAVYG 153
L+ + A +S + L VAVK G ++ + + + AL ++ + E + ++ +
Sbjct: 1289 LTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNNSPDAWT 1348
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQPVTL 210
+ PK L D++E+ AI+VD +F + + F+ L+ +++ + P T
Sbjct: 1349 TTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQYFEDMSIYDTFANKHPTTY 1408
Query: 211 LFK----------LCQKNG--KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLN 258
C K G + VD R A+V V FVA + AK+
Sbjct: 1409 FHNRLTIDFGCTSYCLKAGEVQMVDGTEPRV----YAAVIVHDEFVAEGIASSVRYAKIK 1464
Query: 259 AAREALEKLAQSMP 272
A+ AL KL P
Sbjct: 1465 ASEAALAKLEGLAP 1478
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L AV+ Y+F+R
Sbjct: 1060 NYERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFIR 1119
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAA 172
+ + E + + + + K +ADI E++ A
Sbjct: 1120 TQGFSRRNWYPEGIKLLQGKAKSESQNKHSLGDKTIADICEALIGA 1165
>gi|261198280|ref|XP_002625542.1| dicer-like protein [Ajellomyces dermatitidis SLH14081]
gi|239595505|gb|EEQ78086.1| dicer-like protein [Ajellomyces dermatitidis SLH14081]
Length = 1522
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 115/254 (45%), Gaps = 28/254 (11%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+ Y F+ RLL A TH+S+ + S YQRLEF+GD+ L + Y++ YP DP
Sbjct: 1242 LGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYPDRDPQW 1301
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV-----SQEDNTAVYG 153
L+ + A +S + L VAVK G ++ + + + AL ++ + E + ++ +
Sbjct: 1302 LTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNNSPDAWT 1361
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQPVTL 210
+ PK L D++E+ AI+VD +F + + F+ L+ +++ + P T
Sbjct: 1362 TTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQYFEDMSIYDTFANKHPTTY 1421
Query: 211 LFK----------LCQKNG--KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLN 258
C K G + VD R A+V V FVA + AK+
Sbjct: 1422 FHNRLTIDFGCTSYCLKAGEVQMVDGTEPRV----YAAVIVHDEFVAEGIASSVRYAKIK 1477
Query: 259 AAREALEKLAQSMP 272
A+ AL KL P
Sbjct: 1478 ASEAALAKLEGLAP 1491
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L AV+ Y+F+R
Sbjct: 1073 NYERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFIR 1132
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAA 172
+ + E + + + + K +ADI E++ A
Sbjct: 1133 TQGFSRRNWYPEGIKLLQGKAKSESQNKHSLGDKTIADICEALIGA 1178
>gi|386755684|ref|YP_006228901.1| ribonuclease III [Helicobacter pylori PeCan18]
gi|384561942|gb|AFI02408.1| ribonuclease III [Helicobacter pylori PeCan18]
Length = 239
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|239607869|gb|EEQ84856.1| dicer-like protein [Ajellomyces dermatitidis ER-3]
Length = 1522
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 115/254 (45%), Gaps = 28/254 (11%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+ Y F+ RLL A TH+S+ + S YQRLEF+GD+ L + Y++ YP DP
Sbjct: 1242 LGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLEFLGDSLLDMVCVEYLYHRYPDRDPQW 1301
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV-----SQEDNTAVYG 153
L+ + A +S + L VAVK G ++ + + + AL ++ + E + ++ +
Sbjct: 1302 LTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNALLGQITRYVEEIELAEADSNNSPDAWT 1361
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQPVTL 210
+ PK L D++E+ AI+VD +F + + F+ L+ +++ + P T
Sbjct: 1362 TTSDPPKCLPDMLEAYIGAIFVDSNFKFEVVEDFFQQHLKQYFEDMSIYDTFANKHPTTY 1421
Query: 211 LFK----------LCQKNG--KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLN 258
C K G + VD R A+V V FVA + AK+
Sbjct: 1422 FHNRLTIDFGCTSYCLKAGEVQMVDGTEPRV----YAAVIVHDEFVAEGIASSVRYAKIK 1477
Query: 259 AAREALEKLAQSMP 272
A+ AL KL P
Sbjct: 1478 ASEAALAKLEGLAP 1491
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L AV+ Y+F+R
Sbjct: 1073 NYERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLICNQNLFNTAVRIKLYEFIR 1132
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAA 172
+ + E + + + + K +ADI E++ A
Sbjct: 1133 TQGFSRRNWYPEGIKLLQGKAKSESQNKHSLGDKTIADICEALIGA 1178
>gi|420474166|ref|ZP_14972842.1| ribonuclease III [Helicobacter pylori Hp H-19]
gi|393089302|gb|EJB89942.1| ribonuclease III [Helicobacter pylori Hp H-19]
Length = 239
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D ++ VS + + +
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEEIS---KGREK 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVHKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|420447011|ref|ZP_14945905.1| ribonuclease III [Helicobacter pylori Hp H-43]
gi|393063984|gb|EJB64824.1| ribonuclease III [Helicobacter pylori Hp H-43]
Length = 239
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 122/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y+++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEVGLAKVQKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|420462032|ref|ZP_14960818.1| ribonuclease III [Helicobacter pylori Hp H-3]
gi|393079767|gb|EJB80498.1| ribonuclease III [Helicobacter pylori Hp H-3]
Length = 239
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|15611674|ref|NP_223325.1| ribonuclease III [Helicobacter pylori J99]
gi|420465360|ref|ZP_14964127.1| ribonuclease III [Helicobacter pylori Hp H-6]
gi|7531198|sp|Q9ZLH2.1|RNC_HELPJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|4155159|gb|AAD06188.1| RIBONUCLEASE III [Helicobacter pylori J99]
gi|393082847|gb|EJB83563.1| ribonuclease III [Helicobacter pylori Hp H-6]
Length = 239
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|420450320|ref|ZP_14949182.1| ribonuclease III [Helicobacter pylori Hp H-45]
gi|393067465|gb|EJB68275.1| ribonuclease III [Helicobacter pylori Hp H-45]
Length = 239
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|420425347|ref|ZP_14924408.1| ribonuclease III [Helicobacter pylori Hp A-5]
gi|420433932|ref|ZP_14932937.1| ribonuclease III [Helicobacter pylori Hp H-24]
gi|420445290|ref|ZP_14944204.1| ribonuclease III [Helicobacter pylori Hp H-42]
gi|420464115|ref|ZP_14962890.1| ribonuclease III [Helicobacter pylori Hp H-4]
gi|420475504|ref|ZP_14974175.1| ribonuclease III [Helicobacter pylori Hp H-21]
gi|420479230|ref|ZP_14977879.1| ribonuclease III [Helicobacter pylori Hp H-34]
gi|420485692|ref|ZP_14984310.1| ribonuclease III [Helicobacter pylori Hp P-4]
gi|420507696|ref|ZP_15006205.1| ribonuclease III [Helicobacter pylori Hp H-24b]
gi|420509278|ref|ZP_15007780.1| ribonuclease III [Helicobacter pylori Hp H-24c]
gi|420516188|ref|ZP_15014651.1| ribonuclease III [Helicobacter pylori Hp P-4c]
gi|420517890|ref|ZP_15016344.1| ribonuclease III [Helicobacter pylori Hp P-4d]
gi|420533113|ref|ZP_15031474.1| ribonuclease III [Helicobacter pylori Hp M1]
gi|420534689|ref|ZP_15033037.1| ribonuclease III [Helicobacter pylori Hp M2]
gi|420536401|ref|ZP_15034743.1| ribonuclease III [Helicobacter pylori Hp M3]
gi|420538104|ref|ZP_15036434.1| ribonuclease III [Helicobacter pylori Hp M4]
gi|420539927|ref|ZP_15038244.1| ribonuclease III [Helicobacter pylori Hp M5]
gi|420541590|ref|ZP_15039898.1| ribonuclease III [Helicobacter pylori Hp M6]
gi|420543109|ref|ZP_15041403.1| ribonuclease III [Helicobacter pylori Hp M9]
gi|393041765|gb|EJB42779.1| ribonuclease III [Helicobacter pylori Hp A-5]
gi|393050347|gb|EJB51307.1| ribonuclease III [Helicobacter pylori Hp H-24]
gi|393063484|gb|EJB64331.1| ribonuclease III [Helicobacter pylori Hp H-42]
gi|393078557|gb|EJB79297.1| ribonuclease III [Helicobacter pylori Hp H-4]
gi|393093611|gb|EJB94228.1| ribonuclease III [Helicobacter pylori Hp H-21]
gi|393095472|gb|EJB96076.1| ribonuclease III [Helicobacter pylori Hp H-34]
gi|393103827|gb|EJC04390.1| ribonuclease III [Helicobacter pylori Hp P-4]
gi|393117549|gb|EJC18050.1| ribonuclease III [Helicobacter pylori Hp H-24b]
gi|393120704|gb|EJC21193.1| ribonuclease III [Helicobacter pylori Hp H-24c]
gi|393123389|gb|EJC23858.1| ribonuclease III [Helicobacter pylori Hp P-4d]
gi|393124487|gb|EJC24955.1| ribonuclease III [Helicobacter pylori Hp P-4c]
gi|393137574|gb|EJC37957.1| ribonuclease III [Helicobacter pylori Hp M1]
gi|393141329|gb|EJC41694.1| ribonuclease III [Helicobacter pylori Hp M2]
gi|393144049|gb|EJC44393.1| ribonuclease III [Helicobacter pylori Hp M3]
gi|393145659|gb|EJC45990.1| ribonuclease III [Helicobacter pylori Hp M4]
gi|393146144|gb|EJC46473.1| ribonuclease III [Helicobacter pylori Hp M5]
gi|393148210|gb|EJC48534.1| ribonuclease III [Helicobacter pylori Hp M6]
gi|393159692|gb|EJC59942.1| ribonuclease III [Helicobacter pylori Hp M9]
Length = 239
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|420430452|ref|ZP_14929480.1| ribonuclease III [Helicobacter pylori Hp A-20]
gi|420440432|ref|ZP_14939388.1| ribonuclease III [Helicobacter pylori Hp H-30]
gi|420482233|ref|ZP_14980870.1| ribonuclease III [Helicobacter pylori Hp P-2]
gi|420512656|ref|ZP_15011139.1| ribonuclease III [Helicobacter pylori Hp P-2b]
gi|393047149|gb|EJB48124.1| ribonuclease III [Helicobacter pylori Hp A-20]
gi|393056659|gb|EJB57570.1| ribonuclease III [Helicobacter pylori Hp H-30]
gi|393099467|gb|EJC00049.1| ribonuclease III [Helicobacter pylori Hp P-2]
gi|393157719|gb|EJC57980.1| ribonuclease III [Helicobacter pylori Hp P-2b]
Length = 239
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|420504304|ref|ZP_15002831.1| ribonuclease III [Helicobacter pylori Hp P-62]
gi|393154716|gb|EJC54997.1| ribonuclease III [Helicobacter pylori Hp P-62]
Length = 239
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA +S HGF K + A AL D ++ VS + + +
Sbjct: 81 LSKLRAAIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEEIS---NGREK 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
AL+KL ++
Sbjct: 229 YYALQKLKEA 238
>gi|420438689|ref|ZP_14937663.1| ribonuclease III [Helicobacter pylori Hp H-29]
gi|393056289|gb|EJB57201.1| ribonuclease III [Helicobacter pylori Hp H-29]
Length = 239
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|425433524|ref|ZP_18814058.1| ribonuclease III [Helicobacter pylori GAM100Ai]
gi|410713866|gb|EKQ71358.1| ribonuclease III [Helicobacter pylori GAM100Ai]
Length = 240
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 22 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 81
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 82 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 122
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 123 PSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQE 176
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 177 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 229
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 230 YQALQKLKEA 239
>gi|420472249|ref|ZP_14970942.1| ribonuclease III [Helicobacter pylori Hp H-18]
gi|393089066|gb|EJB89707.1| ribonuclease III [Helicobacter pylori Hp H-18]
Length = 239
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|347525654|ref|YP_004832402.1| ribonuclease III [Lactobacillus ruminis ATCC 27782]
gi|345284613|gb|AEN78466.1| ribonuclease III [Lactobacillus ruminis ATCC 27782]
Length = 230
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 108/237 (45%), Gaps = 43/237 (18%)
Query: 46 NFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYPQLDPGQL 99
N KN L +EA TH+SY + Y+R+EF+GDA + L +S Y+F YP L G+L
Sbjct: 16 NVKNAELFDEAFTHASYVNEHPKEHLKYYERIEFLGDAVMQLCVSEYLFKRYPSLPEGKL 75
Query: 100 SLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAP 159
S LRAA + + ++ A + F +++R K +E A A ++ P
Sbjct: 76 SRLRAAMVCEDSFSKFAKECHFDEYIRLG------KGEEKANARNR-------------P 116
Query: 160 KVLADIVESIAAAIYVDIDFD----------LQKLWM-IFRGLLEPIVTLEELQQQPQPV 208
+L DI ES A+Y+D D KL M F LL+ L+E QQ
Sbjct: 117 SLLCDIFESFIGALYLDQGKDKVVEFISAVVFPKLDMGWFDHLLDHKTELQEYLQQNGDC 176
Query: 209 TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+ +K+ + G D + +VY DG + K+ A+ AA +AL+
Sbjct: 177 KIEYKMLDEKGPDND-------KTYTMAVYADGKKIGEGVGSSKKNAEQAAAYQALK 226
>gi|420480697|ref|ZP_14979340.1| ribonuclease III [Helicobacter pylori Hp P-1]
gi|420511195|ref|ZP_15009682.1| ribonuclease III [Helicobacter pylori Hp P-1b]
gi|393096713|gb|EJB97310.1| ribonuclease III [Helicobacter pylori Hp P-1]
gi|393119679|gb|EJC20169.1| ribonuclease III [Helicobacter pylori Hp P-1b]
Length = 239
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|291530279|emb|CBK95864.1| RNAse III [Eubacterium siraeum 70/3]
Length = 226
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 124/241 (51%), Gaps = 41/241 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E II Y FKN LL+EALTHSSYT+ S +RLEF+GD+ L + +S ++F L
Sbjct: 4 LEQIIGYTFKNPELLKEALTHSSYTNGKHLRSNERLEFLGDSVLSIVVSEHLFENLTNLP 63
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
GQL+ +RA+ V ++ Y F R +D + ++ E++T G
Sbjct: 64 EGQLTKIRAS---------VVCENALYPFAR----KID--LGKYIFLGKGEEHT----GG 104
Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWMI-FRGLLEPIVT-----------LEELQQ 203
+LAD E++ AAIY+D F+ + +++ F L+ + T L+E+ Q
Sbjct: 105 RDRHSILADAFEALIAAIYLDGGFEAARNFILPFIPPLDKLSTGKFLLGDYKTVLQEIIQ 164
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
Q + +++ ++G+ N++ A+V ++G + + + K+ A+ +AA+EA
Sbjct: 165 QNPEERVTYEISDESGQA-------HNKQFTANVLLNGQIIGTGKGKSKKEAEQSAAKEA 217
Query: 264 L 264
+
Sbjct: 218 I 218
>gi|420431419|ref|ZP_14930438.1| ribonuclease III [Helicobacter pylori Hp H-16]
gi|393049012|gb|EJB49978.1| ribonuclease III [Helicobacter pylori Hp H-16]
Length = 239
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|420502804|ref|ZP_15001340.1| ribonuclease III [Helicobacter pylori Hp P-41]
gi|393150676|gb|EJC50981.1| ribonuclease III [Helicobacter pylori Hp P-41]
Length = 239
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLHISSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|384897375|ref|YP_005772803.1| ribonuclease III [Helicobacter pylori Lithuania75]
gi|317012480|gb|ADU83088.1| ribonuclease III [Helicobacter pylori Lithuania75]
Length = 239
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRISSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|296809942|ref|XP_002845309.1| dicer-like protein 1 [Arthroderma otae CBS 113480]
gi|238842697|gb|EEQ32359.1| dicer-like protein 1 [Arthroderma otae CBS 113480]
Length = 1521
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 116/260 (44%), Gaps = 28/260 (10%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSY----TDSTSYQRLEFIGDAALGLALSNYVFL 89
D +E + Y FK +LL A H SY + YQRLEF+GD+ L +A N++F
Sbjct: 1235 DVANQIEEKLGYRFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMACVNHLFT 1294
Query: 90 AYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE---AVSQE 146
YP DP L+ + A +S + L +AV + + H + L ++ + E A+ E
Sbjct: 1295 KYPDKDPQWLTEHKMAMVSNKFLGSLAVGLNLHVHLIHISNVLQGQITCYTEELQAMKME 1354
Query: 147 --DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEEL 201
N + + + PK L DIVE+ AI+VD +F+ + F+ ++ +T+ +
Sbjct: 1355 MGGNLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVIDDFFKRFIQHYFEDMTVYDT 1414
Query: 202 QQQPQPVTLL------------FKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASS 249
P+T L + L VD R +A+V V VA +
Sbjct: 1415 FANKHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTIRA----LAAVCVHNDIVAEGVA 1470
Query: 250 EQKEIAKLNAAREALEKLAQ 269
AKL A++ AL+ L Q
Sbjct: 1471 TSPRHAKLKASQNALQILEQ 1490
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L A+ +K++R
Sbjct: 1073 NYERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMLLICNQNLFNNAIILEVFKYIR 1132
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIK--APKVLADIVESIAAA 172
+ + E + +D GG A K +AD+ E++ A
Sbjct: 1133 SKSFSRRGWYPEGLTLLKGKDKKENPGGPTHALADKSIADVCEALIGA 1180
>gi|420468834|ref|ZP_14967563.1| ribonuclease III [Helicobacter pylori Hp H-10]
gi|393086245|gb|EJB86923.1| ribonuclease III [Helicobacter pylori Hp H-10]
Length = 239
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|385218925|ref|YP_005780400.1| ribonuclease III [Helicobacter pylori Gambia94/24]
gi|317014083|gb|ADU81519.1| ribonuclease III [Helicobacter pylori Gambia94/24]
Length = 239
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 122/251 (48%), Gaps = 52/251 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVK-EFAEAVSQEDNTAVYGGSIK 157
LS LRA+ +S HGF K + A AL D ++ +E +S+ +
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQDYLRISSSEEISK---------GRE 120
Query: 158 APKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLE 199
P +L+ E++ A +Y++ DL+ L+M ++ L+
Sbjct: 121 KPSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQ 174
Query: 200 ELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNA 259
EL Q V ++L Q+ G +++ ++Y+ A+A + K+ A+
Sbjct: 175 ELTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQC 227
Query: 260 AREALEKLAQS 270
A +AL+KL ++
Sbjct: 228 AYQALQKLKEA 238
>gi|420489139|ref|ZP_14987735.1| ribonuclease III [Helicobacter pylori Hp P-11]
gi|420522816|ref|ZP_15021240.1| ribonuclease III [Helicobacter pylori Hp P-11b]
gi|393107521|gb|EJC08063.1| ribonuclease III [Helicobacter pylori Hp P-11]
gi|393129773|gb|EJC30207.1| ribonuclease III [Helicobacter pylori Hp P-11b]
Length = 239
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLHISSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|420423650|ref|ZP_14922721.1| ribonuclease III [Helicobacter pylori Hp A-4]
gi|420428661|ref|ZP_14927696.1| ribonuclease III [Helicobacter pylori Hp A-17]
gi|420531153|ref|ZP_15029528.1| ribonuclease III [Helicobacter pylori Hp P-28b]
gi|393041372|gb|EJB42388.1| ribonuclease III [Helicobacter pylori Hp A-4]
gi|393046320|gb|EJB47300.1| ribonuclease III [Helicobacter pylori Hp A-17]
gi|393139179|gb|EJC39560.1| ribonuclease III [Helicobacter pylori Hp P-28b]
Length = 239
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 122/251 (48%), Gaps = 52/251 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVK-EFAEAVSQEDNTAVYGGSIK 157
LS LRA+ +S HGF K + A AL D ++ +E +S+ +
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQDYLRISSSEEISK---------GRE 120
Query: 158 APKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLE 199
P +L+ E++ A +Y++ DL+ L+M ++ L+
Sbjct: 121 KPSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQ 174
Query: 200 ELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNA 259
EL Q V ++L Q+ G +++ ++Y+ A+A + K+ A+
Sbjct: 175 ELTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQC 227
Query: 260 AREALEKLAQS 270
A +AL+KL ++
Sbjct: 228 AYQALQKLKEA 238
>gi|420419921|ref|ZP_14919008.1| ribonuclease III [Helicobacter pylori NQ4161]
gi|393037157|gb|EJB38193.1| ribonuclease III [Helicobacter pylori NQ4161]
Length = 239
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 122/251 (48%), Gaps = 52/251 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVK-EFAEAVSQEDNTAVYGGSIK 157
LS LRA+ +S HGF K + A AL D ++ +E +S+ +
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQDYLRISSSEEISK---------GRE 120
Query: 158 APKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLE 199
P +L+ E++ A +Y++ DL+ L+M ++ L+
Sbjct: 121 KPSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQ 174
Query: 200 ELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNA 259
EL Q V ++L Q+ G +++ ++Y+ A+A + K+ A+
Sbjct: 175 ELTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQC 227
Query: 260 AREALEKLAQS 270
A +AL+KL ++
Sbjct: 228 AYQALQKLKEA 238
>gi|326472405|gb|EGD96414.1| dicer [Trichophyton tonsurans CBS 112818]
Length = 1519
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 115/260 (44%), Gaps = 28/260 (10%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSY----TDSTSYQRLEFIGDAALGLALSNYVFL 89
D +++ + Y FK +LL A H SY + YQRLEF+GD+ L + N++F
Sbjct: 1233 DVANQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFE 1292
Query: 90 AYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE-----AVS 144
YP DP L+ + A +S + L +AV + + H + L ++ + E +
Sbjct: 1293 RYPDKDPQWLTEHKMAMVSNKFLGSLAVNLNLHVHLIHISNTLQGQITSYTEELQAMKIK 1352
Query: 145 QEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEEL 201
E N + + + PK L DIVE+ AI+VD +F+ + FR ++ +++ +
Sbjct: 1353 MEGNLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDEFFRKFIQHYFEDMSVYDT 1412
Query: 202 QQQPQPVTLL------------FKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASS 249
P+T L + L VD R +A+V V VA +
Sbjct: 1413 FANKHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTVRA----LAAVCVHDDIVAEGVA 1468
Query: 250 EQKEIAKLNAAREALEKLAQ 269
AKL A++ AL+ L +
Sbjct: 1469 SSPRHAKLKASQNALQVLEE 1488
>gi|443893959|dbj|GAC71147.1| dsRNA-specific nuclease Dicer and related ribonucleases [Pseudozyma
antarctica T-34]
Length = 1764
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDST--SYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+++++ + ++ L EA TH S S SYQRLEF+GDA L L + Y+F A+P L
Sbjct: 1472 HLQSLFGHVYRYPHLGLEAFTHPSLLASVLPSYQRLEFLGDAWLDLYIVRYIFSAHPDLS 1531
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG- 154
PG+L+ L+ S LA + + G +++V ++ L + ++ A+ Y
Sbjct: 1532 PGELTALKGMLASNSTLAALGHRLGLHRYVASNSEVLVSTLSAYSTAMEGAGEGTAYWHK 1591
Query: 155 -SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194
+ PK LAD VE+ A+I VD FD +F L P
Sbjct: 1592 VDVGVPKALADAVEASFASIVVDSSFDPSMAQGVFDRLFVP 1632
>gi|242309254|ref|ZP_04808409.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
gi|239524295|gb|EEQ64161.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
Length = 224
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 52/252 (20%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
+ + + Y+FKN+ LL+EALTH S ST +RLEF+GDA L L + +++ +P G
Sbjct: 5 HFQQTLGYHFKNQNLLKEALTHKSAKKSTHNERLEFLGDAVLDLIIGEFLYKKFPSSPEG 64
Query: 98 QLSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
+LS +RA+ ++ + A++A + G Y F+ H S+E N S
Sbjct: 65 ELSKMRASMVNEKAFAKIARYLGIGEYLFISH----------------SEEQNHGRDKDS 108
Query: 156 IKAPKVLADIVESIAAAIYVDIDFD-LQKLWMIFRGLLEPIV-----------TLEELQQ 203
I L++ E+I AIY++ + +QK+ + +L P + +L+EL Q
Sbjct: 109 I-----LSNAFEAIIGAIYLESGLEKVQKIVLKILEILYPKIDIQHLFYDHKTSLQELTQ 163
Query: 204 Q-----PQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLN 258
P+ V L D K N++ + V++ G A AS + K+ A+ N
Sbjct: 164 ALFGVIPEYVVL------------DSKGPDHNKEFLIGVFIQGKEYAHASGKSKKEAQQN 211
Query: 259 AAREALEKLAQS 270
A+ ALE L ++
Sbjct: 212 CAKIALEILKET 223
>gi|420451984|ref|ZP_14950834.1| ribonuclease III [Helicobacter pylori Hp A-6]
gi|393069825|gb|EJB70620.1| ribonuclease III [Helicobacter pylori Hp A-6]
Length = 239
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 123/250 (49%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K A A+D ++++ S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKL----AKAID--LQDYLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|326481629|gb|EGE05639.1| hypothetical protein TEQG_04648 [Trichophyton equinum CBS 127.97]
Length = 1519
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 115/260 (44%), Gaps = 28/260 (10%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSY----TDSTSYQRLEFIGDAALGLALSNYVFL 89
D +++ + Y FK +LL A H SY + YQRLEF+GD+ L + N++F
Sbjct: 1233 DVANQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFE 1292
Query: 90 AYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE-----AVS 144
YP DP L+ + A +S + L +AV + + H + L ++ + E +
Sbjct: 1293 RYPDKDPQWLTEHKMAMVSNKFLGSLAVNLNLHVHLIHISNTLQGQITSYTEELQAMKIK 1352
Query: 145 QEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEEL 201
E N + + + PK L DIVE+ AI+VD +F+ + FR ++ +++ +
Sbjct: 1353 MEGNLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDEFFRKFIQHYFEDMSVYDT 1412
Query: 202 QQQPQPVTLL------------FKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASS 249
P+T L + L VD R +A+V V VA +
Sbjct: 1413 FANKHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTVRA----LAAVCVHDDIVAEGVA 1468
Query: 250 EQKEIAKLNAAREALEKLAQ 269
AKL A++ AL+ L +
Sbjct: 1469 SSPRHAKLKASQNALQVLEE 1488
>gi|208434584|ref|YP_002266250.1| ribonuclease III [Helicobacter pylori G27]
gi|226741372|sp|B5Z735.1|RNC_HELPG RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|208432513|gb|ACI27384.1| ribonuclease III [Helicobacter pylori G27]
Length = 239
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA +S HGF K + A AL D ++ VS + + +
Sbjct: 81 LSKLRAAIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEEIS---KGREK 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
AL+KL ++
Sbjct: 229 YYALQKLKEA 238
>gi|421721305|ref|ZP_16160581.1| ribonuclease III [Helicobacter pylori R055a]
gi|407225066|gb|EKE94839.1| ribonuclease III [Helicobacter pylori R055a]
Length = 239
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 121/251 (48%), Gaps = 52/251 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVK-EFAEAVSQEDNTAVYGGSIK 157
LS LRA+ +S HGF K + A AL D ++ +E +S+ +
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQDYLRISSSEEISK---------GRE 120
Query: 158 APKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLE 199
P +L+ E++ A +Y++ DL+ L+M ++ L+
Sbjct: 121 KPSILSSAFEALMAGVYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYK------TALQ 174
Query: 200 ELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNA 259
EL Q V ++L Q+ G +++ ++Y+ A+A + K+ A+
Sbjct: 175 ELTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQC 227
Query: 260 AREALEKLAQS 270
A AL+KL ++
Sbjct: 228 AYHALQKLKEA 238
>gi|168184661|ref|ZP_02619325.1| ribonuclease III [Clostridium botulinum Bf]
gi|237795890|ref|YP_002863442.1| ribonuclease III [Clostridium botulinum Ba4 str. 657]
gi|182672267|gb|EDT84228.1| ribonuclease III [Clostridium botulinum Bf]
gi|229262399|gb|ACQ53432.1| ribonuclease III [Clostridium botulinum Ba4 str. 657]
Length = 234
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 42/240 (17%)
Query: 47 FKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
FKN++LL+ ALTHSSY + Y+RLEF+GD+ L L +S +++ Y G+L+
Sbjct: 19 FKNEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDKKEGELTRK 78
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
RA + L +A + +++ S + GG + +L
Sbjct: 79 RAIIVCENSLYEIAKRWDLGLYLQMSKGE------------------ELTGGRERVS-IL 119
Query: 163 ADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIV----------TLEELQQQPQPVTL 210
AD VESI AAIY+D D + +++ F+ ++E + TL+E+ QQ +T+
Sbjct: 120 ADCVESIIAAIYLDKGLDHAREFVMKNFKEIIEKAMKDEIILDYKTTLQEIVQQNNDLTI 179
Query: 211 LFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270
++L ++ G R+ +V +D + K+ A+ NAAREAL+ L +
Sbjct: 180 NYELLKQEGPP-------HRRRFFTNVTIDNEVRGTGIGYSKKEAEQNAAREALKNLGDN 232
>gi|346318518|gb|EGX88121.1| RNase3 domain protein [Cordyceps militaris CM01]
Length = 1455
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 16/182 (8%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNY 86
S + AV V +I Y F++ LL A TH SY + YQ LEF+GDA L +A+ ++
Sbjct: 1165 SASVRAAVDRVAGLIGYRFRSPLLLRSAFTHPSYKAEEIPDYQTLEFLGDALLDMAIVDH 1224
Query: 87 VFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF------- 139
+F A+P P L+ + S + L + V G + V + AA+ +++ F
Sbjct: 1225 LFRAHPDAGPQWLTEHKMGVCSNQFLGYLCVSLGLQREVLAADAAVPGQIRSFEERLAYL 1284
Query: 140 ---AEAVSQEDNTAVYGG----SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
AE + + V G + + PKVLAD+VE++ A++VD +D + F +
Sbjct: 1285 KDAAETAAAQQGRPVSKGYWTLATRPPKVLADVVEALIGAMFVDARYDYAVVQRFFEAFV 1344
Query: 193 EP 194
P
Sbjct: 1345 RP 1346
>gi|56419727|ref|YP_147045.1| ribonuclease III [Geobacillus kaustophilus HTA426]
gi|81347639|sp|Q5L0Q3.1|RNC_GEOKA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|56379569|dbj|BAD75477.1| dsRNA-specific ribonuclease [Geobacillus kaustophilus HTA426]
Length = 246
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 115/246 (46%), Gaps = 43/246 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYP 92
++N I F+N++LL +A THSSY + +RLEF+GDA L L +S Y+F +P
Sbjct: 21 LQNKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQKFP 80
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ GQL+ LRAA + L + A AL F E V +
Sbjct: 81 HMSEGQLTKLRAAIVCEPSLVKF-------------ANALS-----FGELVLLGKGEELT 122
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWM------IFRGLLEPIVTLEEL 201
GG + P +LAD+ E+ A+Y+D D L+K F +++ L+EL
Sbjct: 123 GGRTR-PALLADVFEAFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQEL 181
Query: 202 QQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
Q+ TL + + ++ G N++ +A V ++G + K+ A+ +AA+
Sbjct: 182 VQRDGSGTLEYAILEEKGPA-------HNKEFVARVALNGQELGIGVGRSKKEAEQHAAQ 234
Query: 262 EALEKL 267
ALE L
Sbjct: 235 MALETL 240
>gi|255953957|ref|XP_002567731.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589442|emb|CAP95586.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1495
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 12/193 (6%)
Query: 43 INYNFKNKRLLEEALTHSSY----TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+ Y+FK RLL A TH SY YQRLEF+GDA L + ++F +P DP
Sbjct: 1219 VGYDFKYPRLLRSAFTHPSYPLAWAKVPCYQRLEFLGDALLDMVCVEHLFHRFPNRDPQW 1278
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS---QEDNTAV--YG 153
L+ + A +S + L +AVK G + ++H + L + ++AE + E N V +
Sbjct: 1279 LTEHKMAMVSNKFLGALAVKLGLHLHLQHFSNPLMIQNSKYAEEIQLAESESNGEVDYWL 1338
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQPVTL 210
+ +PK L D++E+ AI+VD FD + F+ + P +++ + P T
Sbjct: 1339 STSDSPKCLPDMLEAYLGAIFVDSGFDFTVIEAFFQRHILPFFHDMSIYDTFANRHPTTF 1398
Query: 211 LFKLCQKNGKQVD 223
L N + D
Sbjct: 1399 LHSQMTHNYRCAD 1411
>gi|262373078|ref|ZP_06066357.1| ribonuclease III [Acinetobacter junii SH205]
gi|262313103|gb|EEY94188.1| ribonuclease III [Acinetobacter junii SH205]
Length = 232
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 120/256 (46%), Gaps = 33/256 (12%)
Query: 23 MLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLA 82
M +LP+ ++ DA ++N I + F+ LL+ ALTH S + +Y+RLEF+GD+ LG+
Sbjct: 1 MTKNLPNNKLNDA--RLQNRIGHQFQQFDLLKLALTHRSVSHKHNYERLEFLGDSLLGMI 58
Query: 83 LSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEA 142
++NY++ YP+ + G+L+ +RA + E L ++A + + S L
Sbjct: 59 IANYLYHTYPKENEGRLTRMRATLVRQEALGKIANDLQLSRSLILSTGELK--------- 109
Query: 143 VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-TLEEL 201
G +LAD VE+I AIY+D + DL L I EP + +E
Sbjct: 110 ----------SGGHHRESILADTVEAIIGAIYLDSN-DLNLLQSIVLKWYEPYLDHIEPT 158
Query: 202 QQQPQPVTLLFKLCQKNGKQ------VDIKHWRKNRKNIASVYVDG--SFVASASSEQKE 253
Q P + L + Q K VDI+ N+ V+G F+ SS +
Sbjct: 159 DQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPNQHFKVECNVEGMPKFIGEGSS--RR 216
Query: 254 IAKLNAAREALEKLAQ 269
A+ AA E L+ L Q
Sbjct: 217 FAEQTAAAEILKLLEQ 232
>gi|104774253|ref|YP_619233.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
gi|103423334|emb|CAI98181.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
11842]
Length = 231
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 114/238 (47%), Gaps = 45/238 (18%)
Query: 47 FKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
FK+ RLLEEA THSSY + +Y++LEF+GDA L +S+Y++ + L+ G+L+
Sbjct: 18 FKDVRLLEEAFTHSSYVNENPGKTFGNYEKLEFLGDAVLEFTVSDYLYRHFQHLNEGELT 77
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
LR+ + TE ++VA+ GF +E V +E G K
Sbjct: 78 RLRSNIVRTEGFSKVALDCGF--------------KEEINLGVGEEK-----AGGRKRKA 118
Query: 161 VLADIVESIAAAIYVDID------FDLQKLW-MIFRGLLEPI----VTLEELQQQPQPVT 209
+L D+ E+ A+++D F Q ++ +I G P L+EL QQ VT
Sbjct: 119 LLEDVFEAFNGALFLDQGIEAVEKFLSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVT 178
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+ +++ ++ + H+ V VDG +AS K+ A+ +AA ALE L
Sbjct: 179 IEYRVLNESQQP---PHFE------VEVLVDGKKLASGEGRNKKKAEQDAASHALEHL 227
>gi|385816004|ref|YP_005852395.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus 2038]
gi|418035104|ref|ZP_12673563.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
gi|325126041|gb|ADY85371.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus 2038]
gi|354691042|gb|EHE90982.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1519]
Length = 231
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 114/238 (47%), Gaps = 45/238 (18%)
Query: 47 FKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
FK+ RLLEEA THSSY + +Y++LEF+GDA L +S+Y++ + L+ G+L+
Sbjct: 18 FKDVRLLEEAFTHSSYVNENPGKTLGNYEKLEFLGDAVLEFTVSDYLYRHFQHLNEGELT 77
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
LR+ + TE ++VA+ GF +E V +E G K
Sbjct: 78 RLRSNIVRTEGFSKVALDCGF--------------KEEINLGVGEEK-----AGGRKRKA 118
Query: 161 VLADIVESIAAAIYVDID------FDLQKLW-MIFRGLLEPI----VTLEELQQQPQPVT 209
+L D+ E+ A+++D F Q ++ +I G P L+EL QQ VT
Sbjct: 119 LLEDVFEAFNGALFLDQGIEAVEKFLSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVT 178
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+ +++ ++ + H+ V VDG +AS K+ A+ +AA ALE L
Sbjct: 179 IEYRVLNESQQP---PHFE------VEVLVDGKKLASGEGRNKKKAEQDAASHALEHL 227
>gi|421718283|ref|ZP_16157582.1| ribonuclease III [Helicobacter pylori R038b]
gi|407221549|gb|EKE91353.1| ribonuclease III [Helicobacter pylori R038b]
Length = 239
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 124/261 (47%), Gaps = 50/261 (19%)
Query: 28 PSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYV 87
P + + +E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + +
Sbjct: 10 PYATLNSSYATLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELL 69
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
+ + Q D G+LS LRA+ +S HGF K + A AL D ++ VS +
Sbjct: 70 YHKFYQYDEGKLSKLRASIVSA---------HGFTKLAK--AIALQDYLR-----VSSSE 113
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDID------------------FDLQKLWMIFR 189
+ G K P +L+ E++ A +Y++ DL+ L+M ++
Sbjct: 114 E--ISNGREK-PSILSSAFEALMAGVYLEAGLAKVQKIMQNLLNRAYKRLDLEHLFMDYK 170
Query: 190 GLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASS 249
L+EL Q V ++L Q+ G +++ ++Y+ A+A
Sbjct: 171 ------TALQELTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKIYATAKG 217
Query: 250 EQKEIAKLNAAREALEKLAQS 270
+ K+ A+ A AL+KL ++
Sbjct: 218 KSKKEAEQQCAYYALQKLKEA 238
>gi|385220515|ref|YP_005781987.1| ribonuclease III [Helicobacter pylori India7]
gi|317009322|gb|ADU79902.1| ribonuclease III [Helicobacter pylori India7]
Length = 239
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ V G K
Sbjct: 81 LSKLRASIVSV---------HGFTKLAK--AIALQD----YLRVSSSEE---VSNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVHKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|224372163|ref|YP_002606535.1| ribonuclease III [Nautilia profundicola AmH]
gi|223589278|gb|ACM93014.1| ribonuclease III [Nautilia profundicola AmH]
Length = 226
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 22/165 (13%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FKNK+L+ EALTH SY + +RLEF+GDA + L + Y+F +P+ + G
Sbjct: 6 LEKSLGYQFKNKKLITEALTHRSYKKEVNNERLEFLGDAVMDLIVGEYLFHLFPKAEEGI 65
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + R+A + K++ S A +E+N +
Sbjct: 66 LSKLRAALVNEDSFTRLAKRLNLGKYLYLSPA--------------EENNNGR-----EK 106
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLE--PIVTLEEL 201
P +L+ E++ AIY++ F+ K + R L E PI+T EEL
Sbjct: 107 PSILSSAFEAVIGAIYLEAGFEKAK-DVALRLLKEEFPIITPEEL 150
>gi|366053080|ref|ZP_09450802.1| ribonuclease III [Lactobacillus suebicus KCTC 3549]
Length = 233
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 116/249 (46%), Gaps = 47/249 (18%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYPQL 94
N + +F N LL+EA T +SY + Y+R+EF+GDA L L +S Y++ YP++
Sbjct: 11 NDFDIHFNNHELLDEAFTQASYVNEHPNQGLKFYERIEFLGDAVLQLTVSEYIYQRYPKM 70
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
G+L+ LRAA + + ++ A++ F K++R +E A G
Sbjct: 71 PQGELTRLRAAMVQEDSFSKFALECHFDKYIRLGHG------EEMA-------------G 111
Query: 155 SIKAPKVLADIVESIAAAIYVD-------------IDFDLQKLWMIFRGLLEPIVTLEEL 201
+ + +L DI ES A+Y+D I L + W F ++ +L+E
Sbjct: 112 ARQRSSLLCDIFESFIGALYLDQGKKAVEKFITKVIFPKLDQGW--FDHAVDYKTSLQEF 169
Query: 202 QQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
Q+ V + +K+ ++ G R+ +VY D + S + K+ A++ AA+
Sbjct: 170 LQRNGDVDIDYKVAKEEGPA-------NARQYTVNVYADNQKIGSGTGTSKKHAEMEAAK 222
Query: 262 EALEKLAQS 270
AL L ++
Sbjct: 223 AALNDLRKT 231
>gi|302511053|ref|XP_003017478.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371]
gi|291181049|gb|EFE36833.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371]
Length = 1510
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 115/260 (44%), Gaps = 28/260 (10%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSY----TDSTSYQRLEFIGDAALGLALSNYVFL 89
D +++ + Y FK +LL A H SY + YQRLEF+GD+ L + N++F
Sbjct: 1224 DVANQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFE 1283
Query: 90 AYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE-----AVS 144
YP DP L+ + A +S + L +AV + + H + L ++ + E +
Sbjct: 1284 RYPDKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIK 1343
Query: 145 QEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEEL 201
E N + + + PK L DIVE+ AI+VD +F+ + FR ++ +++ +
Sbjct: 1344 MEGNLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDT 1403
Query: 202 QQQPQPVTLL------------FKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASS 249
P+T L + L VD R +A+V V VA +
Sbjct: 1404 FANKHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTVRA----LAAVCVHDDIVAEGVA 1459
Query: 250 EQKEIAKLNAAREALEKLAQ 269
AKL A++ AL+ L +
Sbjct: 1460 SSPRHAKLKASQNALQILEE 1479
>gi|90961602|ref|YP_535518.1| ribonuclease III [Lactobacillus salivarius UCC118]
gi|301299302|ref|ZP_07205588.1| ribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
gi|385840297|ref|YP_005863621.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus
salivarius CECT 5713]
gi|417788145|ref|ZP_12435828.1| ribonuclease III [Lactobacillus salivarius NIAS840]
gi|122449142|sp|Q1WUA0.1|RNC_LACS1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|90820796|gb|ABD99435.1| Ribonuclease III [Lactobacillus salivarius UCC118]
gi|300214418|gb|ADJ78834.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus
salivarius CECT 5713]
gi|300853146|gb|EFK80744.1| ribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
gi|334308322|gb|EGL99308.1| ribonuclease III [Lactobacillus salivarius NIAS840]
Length = 232
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 114/239 (47%), Gaps = 35/239 (14%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTS--------YQRLEFIGDAALGLALSNYVFLAYPQL 94
N FK+ LL+ A TH+SY + T Y+R+EF+GDA + L +S Y++ YP++
Sbjct: 13 FNITFKDVDLLDAAFTHASYVNETPERKKKLKYYERIEFLGDAVMQLCVSEYIYEHYPEM 72
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
G++S LRAA + + ++ A++ F +++R ++K G
Sbjct: 73 PEGKMSRLRAAMVRADSFSKFAIECHFNEYIRLGKG--EEK-----------------GN 113
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL 214
+ + P +L DI ES A+Y+D D ++ ++ P + L T L ++
Sbjct: 114 ARQRPSLLCDIFESFIGALYLDQGKD--EVVRFISKVIFPKLELGWFDHMMDNKTELQEV 171
Query: 215 CQKNGK------QVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
Q+NG+ +V++ R +V V+ + + K+ A+ AA +AL+KL
Sbjct: 172 LQQNGECKIKYNEVNVTGPDNERVYTMNVVVNNEVMGEGTGRTKKAAEQMAAYQALKKL 230
>gi|254779351|ref|YP_003057456.1| ribonuclease III [Helicobacter pylori B38]
gi|254001262|emb|CAX29239.1| Ribonuclease III (RNase III) [Helicobacter pylori B38]
Length = 232
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 14 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 73
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 74 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISNGREK- 114
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 115 PSILSSAFEALMAGVYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 168
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 169 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 221
Query: 261 REALEKLAQS 270
+ L+KL ++
Sbjct: 222 YQVLQKLKEA 231
>gi|452974503|gb|EME74323.1| ribonuclease III [Bacillus sonorensis L12]
Length = 249
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 113/242 (46%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I+ F+N++LL +A THSSY + +RLEF+GDA L L +S +++ YP +
Sbjct: 27 ISVQFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLYAKYPAMSE 86
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAA + L +A H + F E V + GG
Sbjct: 87 GDLTKLRAAIVCEPSLVSLA----------HELS--------FGELVLLGKGEEMTGGR- 127
Query: 157 KAPKVLADIVESIAAAIYVDIDFD----LQKLWMI-------FRGLLEPIVTLEELQQQP 205
K P +LAD+ E+ A+Y+D D K ++ F +++ L+E Q+
Sbjct: 128 KRPALLADVFEAFIGALYLDQGLDSVVAFLKAYVFPKIDDGAFSHVMDFKSQLQEFVQRD 187
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
TL +K+ Q+ G NR+ A+V + G + S K+ A+ +AA+EAL
Sbjct: 188 GRGTLEYKILQEKGPA-------HNREFEANVSLKGEVLGVGSGRSKKEAEQHAAQEALA 240
Query: 266 KL 267
KL
Sbjct: 241 KL 242
>gi|302662009|ref|XP_003022664.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517]
gi|291186623|gb|EFE42046.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517]
Length = 1510
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 115/260 (44%), Gaps = 28/260 (10%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSY----TDSTSYQRLEFIGDAALGLALSNYVFL 89
D +++ + Y FK +LL A H SY + YQRLEF+GD+ L + N++F
Sbjct: 1224 DVANQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFE 1283
Query: 90 AYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE-----AVS 144
YP DP L+ + A +S + L +AV + + H + L ++ + E +
Sbjct: 1284 RYPDKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIK 1343
Query: 145 QEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEEL 201
E N + + + PK L DIVE+ AI+VD +F+ + FR ++ +++ +
Sbjct: 1344 MEGNLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDT 1403
Query: 202 QQQPQPVTLL------------FKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASS 249
P+T L + L VD R +A+V V VA +
Sbjct: 1404 FANKHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTVRA----LAAVCVHDDIVAEGVA 1459
Query: 250 EQKEIAKLNAAREALEKLAQ 269
AKL A++ AL+ L +
Sbjct: 1460 SSPRHAKLKASQNALQILEE 1479
>gi|384889296|ref|YP_005763598.1| ribonuclease III [Helicobacter pylori v225d]
gi|297379862|gb|ADI34749.1| ribonuclease III [Helicobacter pylori v225d]
Length = 238
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 127/261 (48%), Gaps = 51/261 (19%)
Query: 29 SPEMEDAVF-YVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYV 87
SP + ++ + +E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + +
Sbjct: 9 SPYITNSSYATLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELL 68
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
+ + Q D G+LS LRA+ +ST HGF K + AL D + S E+
Sbjct: 69 YHKFYQYDEGKLSKLRASIVST---------HGFTKLAK--VIALQD----YLRVSSSEE 113
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDID------------------FDLQKLWMIFR 189
+ G K P +L+ E++ A +Y++ DL+ L+M ++
Sbjct: 114 ---ISNGREK-PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK 169
Query: 190 GLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASS 249
L+EL Q V ++L ++ G +++ ++Y+ A+A
Sbjct: 170 ------TALQELTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKG 216
Query: 250 EQKEIAKLNAAREALEKLAQS 270
+ K+ A+ A +AL+KL ++
Sbjct: 217 KSKKEAEQQCAYQALQKLKEA 237
>gi|336380656|gb|EGO21809.1| hypothetical protein SERLADRAFT_441040 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1460
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 7/181 (3%)
Query: 45 YNFKNKRLLEEALTHSSY--TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
Y F LL EA TH S+ + S+SYQRLEF+GDA + L + NY++ +PQ + GQLS
Sbjct: 1145 YEFHRGDLLVEAATHPSFATSASSSYQRLEFLGDAVIDLVVLNYLYRRFPQANSGQLSAA 1204
Query: 103 RAANISTEKLARVAVKH-GFYKFVRHSAAALDDKVKEFA---EAVSQEDNTAVYGGSIKA 158
R+ + LA ++V+ +K + + L + E+ S ED G
Sbjct: 1205 RSRAVCGPTLASISVRRLCLHKILLVNNVELSSAINRHVPILESTSVED-IINKGWKYDP 1263
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
PK L+D++ES+ AI+VD ++ +K+ + ++ ++ L PV+ L +
Sbjct: 1264 PKALSDVLESVVGAIFVDSAYNFEKVASVVELIMSDVLELLSPNLPKDPVSELMVWAASS 1323
Query: 219 G 219
G
Sbjct: 1324 G 1324
>gi|213408108|ref|XP_002174825.1| dicer [Schizosaccharomyces japonicus yFS275]
gi|212002872|gb|EEB08532.1| dicer [Schizosaccharomyces japonicus yFS275]
Length = 1384
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 15/196 (7%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQL 94
+E+++ Y FK+ LL+ A TH+SY +T +YQ+LEF+GDA L + Y+F Y
Sbjct: 1107 LESLVGYTFKHPGLLKIAFTHASYVKTTQTAVNYQQLEFLGDAVLDFIVVRYLFKKYQNK 1166
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS--QEDN---- 148
+L+ ++ + + LA V+ K G Y F+ + + KE+ + Q+D
Sbjct: 1167 TAAELTDTKSFYVCNKSLAYVSFKLGLYDFMLQDNEDIRNAYKEYKSVIDKLQQDTKIDS 1226
Query: 149 -----TAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ + I+ PK L+DI ES A+Y+D F L + L+E + E +
Sbjct: 1227 NHPTPSEKFWLLIEPPKFLSDIFESFVCAVYLDSGFQFSALEPFLKFLVEELGDYEGVFN 1286
Query: 204 QPQPVTLLFKLCQKNG 219
+P + + + QK G
Sbjct: 1287 EPPVFSQINQHLQKQG 1302
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 68 YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRH 127
Y R EF GD L LA SN VFL+Y + +L + R I L ++ KH F+
Sbjct: 950 YDRYEFYGDTFLKLAASNSVFLSYLWVPECKLHIERKRIIRNSTLFTISKKHDLPGFLLS 1009
Query: 128 SAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD 180
+ + F +Q+ + + A K +ADIVES A D D
Sbjct: 1010 EPFVIKTFIP-FGYQPTQKSKNKMERSQLLANKTVADIVESSLGACLYDSGVD 1061
>gi|336367926|gb|EGN96270.1| hypothetical protein SERLA73DRAFT_112480 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1460
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 7/181 (3%)
Query: 45 YNFKNKRLLEEALTHSSY--TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
Y F LL EA TH S+ + S+SYQRLEF+GDA + L + NY++ +PQ + GQLS
Sbjct: 1145 YEFHRGDLLVEAATHPSFATSASSSYQRLEFLGDAVIDLVVLNYLYRRFPQANSGQLSAA 1204
Query: 103 RAANISTEKLARVAVKH-GFYKFVRHSAAALDDKVKEFA---EAVSQEDNTAVYGGSIKA 158
R+ + LA ++V+ +K + + L + E+ S ED G
Sbjct: 1205 RSRAVCGPTLASISVRRLCLHKILLVNNVELSSAINRHVPILESTSVED-IINKGWKYDP 1263
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
PK L+D++ES+ AI+VD ++ +K+ + ++ ++ L PV+ L +
Sbjct: 1264 PKALSDVLESVVGAIFVDSAYNFEKVASVVELIMSDVLELLSPNLPKDPVSELMVWAASS 1323
Query: 219 G 219
G
Sbjct: 1324 G 1324
>gi|327297344|ref|XP_003233366.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892]
gi|326464672|gb|EGD90125.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892]
Length = 1519
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 115/260 (44%), Gaps = 28/260 (10%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSY----TDSTSYQRLEFIGDAALGLALSNYVFL 89
D +++ + Y FK +LL A H SY + YQRLEF+GD+ L + N++F
Sbjct: 1233 DVANQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLDMVCVNHLFE 1292
Query: 90 AYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE-----AVS 144
YP DP L+ + A +S + L +AV + + H + L ++ + E +
Sbjct: 1293 RYPDKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYTEELQAMKIK 1352
Query: 145 QEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEEL 201
E N + + + PK L DIVE+ AI+VD +F+ + FR ++ +++ +
Sbjct: 1353 MEGNLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFDVVDDFFRKFIQHYFEDMSVYDT 1412
Query: 202 QQQPQPVTLL------------FKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASS 249
P+T L + L VD R +A+V V VA +
Sbjct: 1413 FANKHPITFLHTRLAVDFGCTFYALKADEIPCVDGTTVRA----LAAVCVHDDIVAEGVA 1468
Query: 250 EQKEIAKLNAAREALEKLAQ 269
AKL A++ AL+ L +
Sbjct: 1469 SSPRHAKLKASQNALQILEE 1488
Score = 38.1 bits (87), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L A+ +KF+R
Sbjct: 1071 NYERLEFLGDCFLKMATSISLFAMNPDNDEYDYHVKRMLLICNQNLFNNAINLEIFKFIR 1130
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGG--SIKAPKVLADIVESIAAA 172
+ + E + +D G A K +AD+ E++ A
Sbjct: 1131 SRSFSRRAWYPEGLTLLKGKDKKEGPNGPEHALADKTIADVCEALIGA 1178
>gi|259503531|ref|ZP_05746433.1| ribonuclease III [Lactobacillus antri DSM 16041]
gi|259168609|gb|EEW53104.1| ribonuclease III [Lactobacillus antri DSM 16041]
Length = 232
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 122/256 (47%), Gaps = 50/256 (19%)
Query: 31 EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALS 84
E++D Y+ + +F + RLL EA T +SY + Y+R+EF+GDA L L +S
Sbjct: 4 ELQD---YLAKEFDIHFSDPRLLAEAFTQASYVNEHPNQNLKFYERIEFLGDAVLELIVS 60
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS 144
Y++ YP+L G+L+ LRAA + + ++ A + F +++R +E A
Sbjct: 61 EYIYKRYPELPQGRLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHG------EELA---- 110
Query: 145 QEDNTAVYGGSIKAPKVLADIVESIAAAIYVD-----IDFDLQKL--------WMIFRGL 191
G+ + P +L DI ES A+Y+D ++ +Q++ W F
Sbjct: 111 ---------GARQRPGLLCDIFESFVGALYLDQGRPAVEKFVQRVIFPKLDMGW--FDHA 159
Query: 192 LEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQ 251
++ +L+E Q+ V + + L +++G + N V DG +A
Sbjct: 160 VDAKTSLQEFLQRDGDVLIEYHLLEESGTE-------NNPAFHVDVAADGQVIADGQGSS 212
Query: 252 KEIAKLNAAREALEKL 267
K+ A++ AA+ AL+KL
Sbjct: 213 KKQAEMQAAQRALKKL 228
>gi|420466968|ref|ZP_14965725.1| ribonuclease III [Helicobacter pylori Hp H-9]
gi|393085366|gb|EJB86054.1| ribonuclease III [Helicobacter pylori Hp H-9]
Length = 239
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D ++ VS + + +
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEEIS---NGREK 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
AL+KL ++
Sbjct: 229 YYALQKLKEA 238
>gi|419416411|ref|ZP_13956969.1| ribonuclease III [Helicobacter pylori P79]
gi|384375293|gb|EIE30596.1| ribonuclease III [Helicobacter pylori P79]
Length = 239
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 122/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D ++ VS + + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEE--ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKGQKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|378727578|gb|EHY54037.1| RNA helicase/RNAse III [Exophiala dermatitidis NIH/UT8656]
Length = 1629
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 124/292 (42%), Gaps = 49/292 (16%)
Query: 26 SLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDST--SYQRLEFIGDAALGLAL 83
++ P D V ++ Y FKN LL A THSS +S QRLEF+GDA L
Sbjct: 1239 AMNDPVANDLARKVYHVTGYRFKNPCLLRSAFTHSSDQNSPVPDLQRLEFLGDACLDWVC 1298
Query: 84 SNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA--- 140
++F P P L+ + A +S LA +AV GF + + S+ AL ++ +A
Sbjct: 1299 IWWLFRNNPTRGPQWLTEHKMAMVSNRFLAALAVILGFNRLISASSPALYAEIGTYAAKV 1358
Query: 141 -EAVSQED-----NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194
E QED T V GS PK LAD+VES A+ VD FD ++ F +E
Sbjct: 1359 LELYEQEDVKPDFWTRVTSGS-APPKALADLVESYLGAVLVDSGFDFAEIEKFFDTHVEW 1417
Query: 195 I---VTLEELQQQPQPVTLLFKL------CQKNGKQVDIKHWRKNRKNIA---------- 235
+ + P T LF+L C+K+ +V ++ N A
Sbjct: 1418 FFRDIEAYDTFANRHPTTHLFRLLTEEFRCRKSRPEVIVQPVEPTTANTAKGGARNDAVG 1477
Query: 236 ------------------SVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
+ +V G VA + + + AK+ A++ AL+ L +
Sbjct: 1478 DEDDGAGDEAVTGIVIHVAWFVHGRMVAVSHGQGAKYAKVRASKAALKILGK 1529
>gi|15645286|ref|NP_207456.1| ribonuclease III [Helicobacter pylori 26695]
gi|2313785|gb|AAD07725.1| ribonuclease III (rnc) [Helicobacter pylori 26695]
Length = 240
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 22 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 81
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 82 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISNGREK- 122
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 123 PSILSSAFEALMAGVYLEAGLAKVQKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 176
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 177 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 229
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 230 YQALQKLKEA 239
>gi|108563072|ref|YP_627388.1| ribonuclease III [Helicobacter pylori HPAG1]
gi|107836845|gb|ABF84714.1| ribonuclease III [Helicobacter pylori HPAG1]
Length = 240
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 22 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 81
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 82 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISNGREK- 122
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 123 PSILSSAFEALMAGVYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 176
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 177 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 229
Query: 261 REALEKLAQS 270
AL+KL ++
Sbjct: 230 YYALQKLKEA 239
>gi|307276679|ref|ZP_07557797.1| ribonuclease III [Enterococcus faecalis TX2134]
gi|306506789|gb|EFM75941.1| ribonuclease III [Enterococcus faecalis TX2134]
Length = 243
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 43/240 (17%)
Query: 47 FKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
F + LLE+A THSSY + Y +RLEF+GDA L L +S Y++L +P+L G+L+
Sbjct: 30 FHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVSQYLYLKFPELPEGKLT 89
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
+RAA + + LA+ A + F ++ L K +E + GG +A
Sbjct: 90 KMRAAIVREDSLAKFAKECHFDNYI------LLGKGEEAS------------GGRTRAS- 130
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQPQPVT 209
+L D+ E+ A+Y+D K ++ F L+ L+E+ Q+ V+
Sbjct: 131 LLCDLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHELDHKTQLQEVLQRKGDVS 190
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
+ ++L ++ G D R VY++G + + K++A+ +AA AL+ + Q
Sbjct: 191 IEYRLIKEEGPAHD-------RTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSIPQ 243
>gi|257440564|ref|ZP_05616319.1| ribonuclease III [Faecalibacterium prausnitzii A2-165]
gi|257196887|gb|EEU95171.1| ribonuclease III [Faecalibacterium prausnitzii A2-165]
Length = 224
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 122/247 (49%), Gaps = 49/247 (19%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSY-----QRLEFIGDAALGLALSNYVFLAYPQ 93
+E II Y FKN +LLE ALTH+SY + + +RLEF+GD+ L + ++Y+F AY
Sbjct: 5 LETIIGYKFKNPKLLETALTHTSYANESRTPVQHNERLEFLGDSVLQIVSADYLFHAYAD 64
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
G L+ +R++ +S L ++F A + + E+ E+ G
Sbjct: 65 RPEGDLTRIRSSLVSEGAL---------FQF------AQEINLGEYLRLGRGEERC---G 106
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT------------LEEL 201
G + P V++D E++ AA+Y+D ++ K +++ P +T L+E+
Sbjct: 107 GRTR-PSVVSDAFEAVIAALYLDGGMEVAKSFIL------PFITEGKHAEADYKTRLQEI 159
Query: 202 QQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
QQ L + + Q++G D KH+ + +V + VA K++A+ +AAR
Sbjct: 160 VQQNPEERLSYVVEQESGPDHD-KHF------VVAVRFNSDKVARGEGRSKKMAEQHAAR 212
Query: 262 EALEKLA 268
EAL+ L
Sbjct: 213 EALKLLG 219
>gi|336322414|ref|YP_004602381.1| ribonuclease 3 [Flexistipes sinusarabici DSM 4947]
gi|336105995|gb|AEI13813.1| Ribonuclease 3 [Flexistipes sinusarabici DSM 4947]
Length = 226
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 116/245 (47%), Gaps = 42/245 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
+++ INYNF N LL EA+TH SY++ + +Y+RLEF+GDA L L +S Y+ Y
Sbjct: 5 LQDKINYNFSNSGLLFEAVTHRSYSNEQNLNRNYERLEFLGDAVLQLIVSEYLLKEYKTF 64
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
D G LS+ R +S + L+++A +V+ EA S G
Sbjct: 65 DEGILSMYRGYFVSEDFLSKIAAALNLGSYVKLGK----------GEAQS---------G 105
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI------------FRGLLEPIVTLEELQ 202
+ P +L DI ES+ AAIY+D ++ K ++ R ++ L++L
Sbjct: 106 GQEKPSLLCDIFESLVAAIYLDGGYEQAKKVVLDLMVNKIDDTISNRSFVDNKTELQKLT 165
Query: 203 QQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262
Q+ +++ + G + D + +V +GS + + K+ A+ NAA
Sbjct: 166 QKKFECLPEYEVISEEGPEHD-------KVFTIAVAAEGSILGYGKGKSKKRAEQNAAGA 218
Query: 263 ALEKL 267
AL+KL
Sbjct: 219 ALKKL 223
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 27/130 (20%)
Query: 234 IASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAA 293
+A++Y+DG + E +K+ + VN +I D I + ++
Sbjct: 121 VAAIYLDGGY------------------EQAKKVVLDLMVN----KIDDTISNRSFVDN- 157
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K +L +L KK P Y++ +EGP HDK F AV +G + G KS+ K AE
Sbjct: 158 KTELQKLTQKKFECLPEYEVISEEGPEHDKVFTIAV---AAEGSILGYGKGKSK-KRAEQ 213
Query: 354 SAASMMLRAL 363
+AA L+ L
Sbjct: 214 NAAGAALKKL 223
>gi|410023898|ref|YP_006893151.1| ribonuclease III [Helicobacter pylori Rif1]
gi|410501665|ref|YP_006936192.1| ribonuclease III [Helicobacter pylori Rif2]
gi|410682185|ref|YP_006934587.1| ribonuclease III [Helicobacter pylori 26695]
gi|7531276|sp|P56118.2|RNC_HELPY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|409893826|gb|AFV41884.1| ribonuclease III [Helicobacter pylori 26695]
gi|409895555|gb|AFV43477.1| ribonuclease III [Helicobacter pylori Rif1]
gi|409897216|gb|AFV45070.1| ribonuclease III [Helicobacter pylori Rif2]
Length = 239
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVQKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|421714918|ref|ZP_16154236.1| ribonuclease III [Helicobacter pylori R036d]
gi|407215772|gb|EKE85610.1| ribonuclease III [Helicobacter pylori R036d]
Length = 239
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D ++ VS + + +
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEEIS---NGREK 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
AL+KL ++
Sbjct: 229 YYALQKLKEA 238
>gi|83319588|ref|YP_424465.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC
27343]
gi|123535692|sp|Q2SRZ8.1|RNC_MYCCT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|83283474|gb|ABC01406.1| ribonuclease III [Mycoplasma capricolum subsp. capricolum ATCC
27343]
Length = 232
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 46/248 (18%)
Query: 45 YNFK--NKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
YN K ++++ +EALTH+SY + SYQRLEF+GDA L + +S ++F Y +L G+
Sbjct: 10 YNIKINDQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYVSKFLFFHYSKLGEGE 69
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
L+ LR++ + E L+R+A + +R L K E
Sbjct: 70 LTRLRSSTVREESLSRIAKDINLGQLIRLGHGELMTKGYE-------------------K 110
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWM---IFRGLLEP--IVTLEELQQQPQPVTLLFK 213
+LADI E++ AA+Y+D + D +W+ +F+ + +P I ++ + + Q +
Sbjct: 111 QSILADIFEALTAAVYIDQNEDGLLIWLEQTLFKYMKDPTFINVTKDFKSELQELL---- 166
Query: 214 LCQKNGKQVDIKHWRKNRK---------NIASVYVDGSFVASASSEQKEIAKLNAAREAL 264
++ K+ D+K+ +N + SV +DG K+ A+ NAA + L
Sbjct: 167 ---QSEKRSDLKYIIENEEFFVNENKTLYTVSVNLDGQKFGVGKGYSKQEAEQNAASDCL 223
Query: 265 EKLAQSMP 272
KL + +
Sbjct: 224 SKLKKPLT 231
>gi|420470518|ref|ZP_14969227.1| ribonuclease III [Helicobacter pylori Hp H-11]
gi|393085951|gb|EJB86630.1| ribonuclease III [Helicobacter pylori Hp H-11]
Length = 239
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
AL+KL ++
Sbjct: 229 YYALQKLKET 238
>gi|424827547|ref|ZP_18252334.1| ribonuclease III [Clostridium sporogenes PA 3679]
gi|365979987|gb|EHN16028.1| ribonuclease III [Clostridium sporogenes PA 3679]
Length = 234
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 115/242 (47%), Gaps = 46/242 (19%)
Query: 47 FKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
FK+++LL+ ALTHSSY + Y+RLEF+GD+ L L +S +++ Y G+L+
Sbjct: 19 FKDEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYEKYEDKKEGELTRK 78
Query: 103 RAANISTEKLARVAVKH--GFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
RA + L +A + GFY + + GG +
Sbjct: 79 RAIIVCENSLYEIAKRWDLGFY--------------------LQMSKGEELTGGRERVS- 117
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIV----------TLEELQQQPQPV 208
+LAD VESI AAIY+D D + +++ F+ ++E + TL+E+ QQ +
Sbjct: 118 ILADCVESIIAAIYLDKGLDEAREFVMKNFKEIIEKAMRDEIILDYKTTLQEIVQQNNDL 177
Query: 209 TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268
T+ ++L ++ G RK +V +D + K+ A+ NAA+EAL+ L
Sbjct: 178 TINYELLKQEGPP-------HRRKFFTNVTIDNEVRGTGIGYSKKEAEQNAAKEALKNLG 230
Query: 269 QS 270
S
Sbjct: 231 DS 232
>gi|419760458|ref|ZP_14286737.1| ribonuclease III [Thermosipho africanus H17ap60334]
gi|407514561|gb|EKF49376.1| ribonuclease III [Thermosipho africanus H17ap60334]
Length = 230
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 117/239 (48%), Gaps = 30/239 (12%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+EN + Y F+N+ LL ALTH+S+ + SY+RLEF+GDA + L LS ++ + L+
Sbjct: 9 LENKLGYRFRNEELLLTALTHTSFAHENNVKSYERLEFLGDAVIDLLLSTILYQEFTNLN 68
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
G ++ ++AA S + L + + G ++ L GG
Sbjct: 69 EGTMAQIKAAVASEDILYEIGIDIGIENYIFLGKGELKS------------------GGK 110
Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPV----TLL 211
K ++AD+VE++ AAIYVD DL + IF + + E+ + + T L
Sbjct: 111 YKKS-IIADVVEALVAAIYVDSKKDLNVIEKIFHDTFKRYI---EIFLSGKRIFDYKTKL 166
Query: 212 FKLCQKNGKQVDI-KHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
++ Q KQ+ + + + K I ++Y+DG + A K+ ++ AA+ A EKL +
Sbjct: 167 QEITQDRFKQLPVYETVSQKNKFITTLYIDGKIYSKAEGFSKKESEKLAAKIAYEKLKE 225
>gi|420501452|ref|ZP_14999996.1| ribonuclease III [Helicobacter pylori Hp P-30]
gi|393150258|gb|EJC50566.1| ribonuclease III [Helicobacter pylori Hp P-30]
Length = 239
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|420490832|ref|ZP_14989414.1| ribonuclease III [Helicobacter pylori Hp P-13]
gi|420524677|ref|ZP_15023084.1| ribonuclease III [Helicobacter pylori Hp P-13b]
gi|393106292|gb|EJC06836.1| ribonuclease III [Helicobacter pylori Hp P-13]
gi|393130948|gb|EJC31372.1| ribonuclease III [Helicobacter pylori Hp P-13b]
Length = 239
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLHVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
AL+KL ++
Sbjct: 229 YYALQKLKEA 238
>gi|420458504|ref|ZP_14957314.1| ribonuclease III [Helicobacter pylori Hp A-26]
gi|393076025|gb|EJB76779.1| ribonuclease III [Helicobacter pylori Hp A-26]
Length = 239
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|217032489|ref|ZP_03437981.1| hypothetical protein HPB128_156g19 [Helicobacter pylori B128]
gi|298736360|ref|YP_003728886.1| ribonuclease 3 [Helicobacter pylori B8]
gi|420435953|ref|ZP_14934952.1| ribonuclease III [Helicobacter pylori Hp H-27]
gi|420492689|ref|ZP_14991263.1| ribonuclease III [Helicobacter pylori Hp P-15]
gi|420497637|ref|ZP_14996197.1| ribonuclease III [Helicobacter pylori Hp P-25]
gi|420526711|ref|ZP_15025112.1| ribonuclease III [Helicobacter pylori Hp P-15b]
gi|420528023|ref|ZP_15026415.1| ribonuclease III [Helicobacter pylori Hp P-25c]
gi|420529893|ref|ZP_15028278.1| ribonuclease III [Helicobacter pylori Hp P-25d]
gi|216945835|gb|EEC24456.1| hypothetical protein HPB128_156g19 [Helicobacter pylori B128]
gi|298355550|emb|CBI66422.1| ribonuclease 3 [Helicobacter pylori B8]
gi|393051812|gb|EJB52763.1| ribonuclease III [Helicobacter pylori Hp H-27]
gi|393107128|gb|EJC07671.1| ribonuclease III [Helicobacter pylori Hp P-15]
gi|393113916|gb|EJC14434.1| ribonuclease III [Helicobacter pylori Hp P-25]
gi|393132016|gb|EJC32439.1| ribonuclease III [Helicobacter pylori Hp P-15b]
gi|393133918|gb|EJC34333.1| ribonuclease III [Helicobacter pylori Hp P-25c]
gi|393136222|gb|EJC36613.1| ribonuclease III [Helicobacter pylori Hp P-25d]
Length = 239
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D ++ VS + + +
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEEIS---NGREK 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
AL+KL ++
Sbjct: 229 YYALQKLKEA 238
>gi|384899032|ref|YP_005774411.1| ribonuclease III [Helicobacter pylori F30]
gi|317178975|dbj|BAJ56763.1| ribonuclease III [Helicobacter pylori F30]
Length = 232
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 14 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 73
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +ST HGF K + AL D + S E+ + G K
Sbjct: 74 LSKLRASIVST---------HGFTKLAK--VIALQD----YLRVSSSEE---ISKGREK- 114
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 115 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 168
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 169 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 221
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 222 YQALQKLKEA 231
>gi|116514343|ref|YP_813249.1| ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|418028850|ref|ZP_12667399.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
gi|116093658|gb|ABJ58811.1| RNAse III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|354691187|gb|EHE91125.1| Ribonuclease III [Lactobacillus delbrueckii subsp. bulgaricus CNCM
I-1632]
Length = 231
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 114/238 (47%), Gaps = 45/238 (18%)
Query: 47 FKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
FK+ RLLEEA THSSY + +Y++LEF+GDA L +S+Y++ + L+ G+L+
Sbjct: 18 FKDVRLLEEAFTHSSYLNENPGKTLGNYEKLEFLGDAVLEFTVSDYLYRHFQHLNEGELT 77
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
LR+ + TE ++VA+ GF +E V +E G K
Sbjct: 78 RLRSNIVRTEGFSKVALDCGF--------------KEEINLGVGEEK-----AGGRKRKA 118
Query: 161 VLADIVESIAAAIYVDID------FDLQKLW-MIFRGLLEPI----VTLEELQQQPQPVT 209
+L D+ E+ A+++D F Q ++ +I G P L+EL QQ VT
Sbjct: 119 LLEDVFEAFNGALFLDQGIEAVEKFLSQTVYPLIAAGYFTPSRDFKTDLQELLQQNGSVT 178
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+ +++ ++ + H+ V VDG +AS K+ A+ +AA ALE L
Sbjct: 179 IEYRVLNESQQP---PHFE------VEVLVDGKKLASGEGRNKKKAEQDAASHALEHL 227
>gi|376336574|gb|AFB32892.1| hypothetical protein 0_6448_02, partial [Pinus cembra]
gi|376336576|gb|AFB32893.1| hypothetical protein 0_6448_02, partial [Pinus cembra]
Length = 150
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
G KAPKVL DIVESIA AI++D D K+W +F+ LL+P+VT E L PV L +
Sbjct: 6 GDFKAPKVLGDIVESIAGAIFLDKVLDTTKVWEVFQPLLQPMVTPETLPM--HPVRELQE 63
Query: 214 LCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 264
CQ+ + ++ K R V+VDG + A + QK++A+ AAR AL
Sbjct: 64 RCQQQAEGLEYKASRTGNMATVEVFVDGVQIGFAQNPQKKMAQKLAARNAL 114
>gi|409076508|gb|EKM76879.1| hypothetical protein AGABI1DRAFT_77978 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1528
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 133/290 (45%), Gaps = 59/290 (20%)
Query: 28 PSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALS 84
P + A++YVE ++ Y FK+K LL EALTH+SY + SY+R+EF+GD+ L + ++
Sbjct: 1202 PDKNIPSALYYVEKMLGYTFKHKVLLLEALTHASYQQDARTVSYERMEFLGDSVLDMVVT 1261
Query: 85 NYVFLAYPQ-LDPGQLSLLRAANISTEKLARVAVKHG----------------------- 120
+Y++ A + PG + L R++ ++T LA + +K
Sbjct: 1262 DYLYHAPDKNYSPGHIHLRRSSVVNTHFLAYICLKTSVKFDALMPRADDEGIELLADAQE 1321
Query: 121 --FYKFVRHSAAALDD----------KVKEFAEAVSQEDNTAVYGG--SIKAPKVLADIV 166
++ + HS++ + D K +E E D + ++APK +DI+
Sbjct: 1322 VMLWQCLLHSSSRIMDDQANTHTRFKKRREEIEEGLMNDTIFPWAALTRLQAPKFFSDII 1381
Query: 167 ESIAAAIYVDIDFDLQKLWMIFR--GLLEPIVTLEELQQQP----QPVTLLFKLCQKNGK 220
ES+ A+Y+D + D+ + G+L TLE + PV+ + + K+ K
Sbjct: 1382 ESVLGAVYLDSNGDIGTARDVITKLGILP---TLERIVHDNVDVWHPVSRISQWASKHEK 1438
Query: 221 QVDIKHWRKNRKNIASVYVDGSF---------VASASSEQKEIAKLNAAR 261
++ + ++ SV VDG AS E K IA NA+R
Sbjct: 1439 KLGWQFEKERGVVKCSVLVDGEVEACAMDDYRGASTQDEVKLIAAENASR 1488
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 42/184 (22%)
Query: 27 LPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNY 86
+PSP ++D LL A+T SS + +YQRLE +GD L ++
Sbjct: 1002 MPSPSLQDIPL-------------ALLSNAMTASSAGEKYNYQRLETLGDTVLKFLVALQ 1048
Query: 87 VFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFV------------RHSAAAL-- 132
V + YP G L+ + ++ LA+ + H Y+++ R+S L
Sbjct: 1049 VLVEYPLWHEGYLTKKKDHTVANVSLAKENINHRLYRWIIKEIMLGRKWRPRYSTKLLPP 1108
Query: 133 ------DDKVKEFAEAVSQEDNTAVYGGSIK---------APKVLADIVESIAAAIYVDI 177
+ V+E V + + G + K + K+LAD+VES+ A Y+
Sbjct: 1109 TTPLSEEKIVEELLMVVDEGAELSSKGAARKKKNSKNQGLSTKILADVVESLIGAAYIHG 1168
Query: 178 DFDL 181
F L
Sbjct: 1169 GFPL 1172
>gi|420413665|ref|ZP_14912788.1| ribonuclease III [Helicobacter pylori NQ4099]
gi|393028194|gb|EJB29281.1| ribonuclease III [Helicobacter pylori NQ4099]
Length = 239
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 122/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D ++ VS + + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEE--ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|295693172|ref|YP_003601782.1| ribonuclease iii [Lactobacillus crispatus ST1]
gi|295031278|emb|CBL50757.1| Ribonuclease III [Lactobacillus crispatus ST1]
Length = 229
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 33/235 (14%)
Query: 44 NYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
N F +++LLEEA THSSY++ Y++LEF+GDA L LA+SNYV+L YP+L+ G
Sbjct: 15 NIVFNDEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAVSNYVYLHYPKLNEG 74
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157
+L+ LR+ + TE + A++ GF D++ N G+
Sbjct: 75 ELTRLRSNIVRTEGFSEFAIECGF-----------QDEI--------HLGNGEEKAGARH 115
Query: 158 APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQK 217
+L D+ E+ A+++D + + + P++ E T L ++ Q+
Sbjct: 116 RKTLLEDVFEAFNGALFLDQ--GMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQEVLQQ 173
Query: 218 NGKQVDIKHWRKNRKNIASVYV-----DGSFVASASSEQKEIAKLNAAREALEKL 267
+G V+I++ + + S +V +G + K+ A+ AA+ AL+KL
Sbjct: 174 DGP-VNIEYTVISESQLPSHFVVELKINGKVESKGEGHNKKAAEQQAAKVALQKL 227
>gi|291542641|emb|CBL15751.1| RNAse III [Ruminococcus bromii L2-63]
Length = 225
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 37/249 (14%)
Query: 32 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSN 85
MED ++ I Y FKN LL EALTHSSY + +RLEF+GDA L + +S+
Sbjct: 1 MED----LQKRIGYTFKNTDLLTEALTHSSYANEHKAKHIKYNERLEFLGDAVLSIVVSD 56
Query: 86 YVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ 145
Y+F P+L G+L+ LRA+ + + L A + K++ S ++
Sbjct: 57 YIFKHCPELPEGELTKLRASLVCEKTLFEFAKQIELGKYLVLSKGERNN----------- 105
Query: 146 EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQP 205
G + P +L+D E++ AAIY+D D ++ + P + + ++
Sbjct: 106 --------GGAERPSILSDAFEALIAAIYIDGGIDPASKHIL--NFVIPAIKNSKKKKLN 155
Query: 206 QPVTLLFKLCQKN-GKQVDI-----KHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNA 259
T L ++ QKN G+Q++ N+ + V+++ + + K+ A+ A
Sbjct: 156 DYKTALQEIIQKNPGEQLEYVLVGESGPDHNKHFVVEVHLNSNVIGKGGGRSKKEAEQQA 215
Query: 260 AREALEKLA 268
AREALE +
Sbjct: 216 AREALELMG 224
>gi|420416986|ref|ZP_14916092.1| ribonuclease III [Helicobacter pylori NQ4044]
gi|393035258|gb|EJB36304.1| ribonuclease III [Helicobacter pylori NQ4044]
Length = 239
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D ++ VS + + +
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEEIS---KGREK 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
AL+KL ++
Sbjct: 229 YYALQKLKEA 238
>gi|420427294|ref|ZP_14926339.1| ribonuclease III [Helicobacter pylori Hp A-9]
gi|393042227|gb|EJB43238.1| ribonuclease III [Helicobacter pylori Hp A-9]
Length = 239
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLTKVRKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|444374116|ref|ZP_21173423.1| ribonuclease III [Helicobacter pylori A45]
gi|443621340|gb|ELT81779.1| ribonuclease III [Helicobacter pylori A45]
Length = 239
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIMQNLLNRTYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|421711672|ref|ZP_16151015.1| ribonuclease III [Helicobacter pylori R030b]
gi|407212821|gb|EKE82683.1| ribonuclease III [Helicobacter pylori R030b]
Length = 239
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|420443654|ref|ZP_14942582.1| ribonuclease III [Helicobacter pylori Hp H-41]
gi|393061161|gb|EJB62030.1| ribonuclease III [Helicobacter pylori Hp H-41]
Length = 239
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 122/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D ++ VS + + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEE--ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|315258243|gb|ADT91700.1| dicer-like protein 2 [Nicotiana attenuata]
Length = 239
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 67/104 (64%), Gaps = 3/104 (2%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYP 92
V Y+E++++Y F + LL EALTH SY YQRLEF+GDA L A++ +++ YP
Sbjct: 123 VRYLESLLDYKFHDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYAVTAHLYFKYP 182
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKV 136
L PG ++ LR+A+++ E A+ AVK G +K + H++ L ++
Sbjct: 183 GLSPGFITDLRSASVNNECYAQAAVKAGLHKHILHASQDLQRQI 226
>gi|421719742|ref|ZP_16159026.1| ribonuclease III [Helicobacter pylori R046Wa]
gi|407221065|gb|EKE90870.1| ribonuclease III [Helicobacter pylori R046Wa]
Length = 239
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLESGLAKVRKIMQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|361066575|gb|AEW07599.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|376336578|gb|AFB32894.1| hypothetical protein 0_6448_02, partial [Pinus mugo]
gi|376336580|gb|AFB32895.1| hypothetical protein 0_6448_02, partial [Pinus mugo]
gi|376336582|gb|AFB32896.1| hypothetical protein 0_6448_02, partial [Pinus mugo]
gi|383164825|gb|AFG65201.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164826|gb|AFG65202.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164827|gb|AFG65203.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164828|gb|AFG65204.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164830|gb|AFG65205.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164831|gb|AFG65206.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164832|gb|AFG65207.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164833|gb|AFG65208.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164834|gb|AFG65209.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164835|gb|AFG65210.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164836|gb|AFG65211.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164837|gb|AFG65212.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164838|gb|AFG65213.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164839|gb|AFG65214.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164840|gb|AFG65215.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
gi|383164841|gb|AFG65216.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
Length = 150
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
G KAPKVL DIVESIA AI++D D K+W +F+ LL+P+VT E L PV L +
Sbjct: 6 GDFKAPKVLGDIVESIAGAIFLDKVLDTAKVWEVFQPLLQPMVTPETLPM--HPVRELQE 63
Query: 214 LCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 264
CQ+ + ++ K R V+VDG + A + QK++A+ AAR AL
Sbjct: 64 RCQQQAEGLEYKASRTGNMATVEVFVDGVQIGFAQNPQKKMAQKLAARNAL 114
>gi|195150547|ref|XP_002016212.1| GL10619 [Drosophila persimilis]
gi|194110059|gb|EDW32102.1| GL10619 [Drosophila persimilis]
Length = 1720
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 94/210 (44%), Gaps = 47/210 (22%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
Y+E + Y F+++ L +ALTH S+ + YQ LEFIGDA L +S Y+F +L
Sbjct: 1442 YLEQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDFLISAYIFENNTKL 1501
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA-------------- 140
PG+L+ LR+A ++ L + V+H + F+ A L + + +F
Sbjct: 1502 RPGELTDLRSALVNNTTLGCICVRHKLHLFILAENALLSETISKFVKFQESQGHRVTNHV 1561
Query: 141 ------------------EAVSQEDNTAVYGGSIKA---------PKVLADIVESIAAAI 173
E +N + G I A PK L D++E++ AA+
Sbjct: 1562 RFLLEERDVQPVILDLDDEVEMAMENDSEDGPPIGAFNLAQNVDVPKALGDVLEALIAAV 1621
Query: 174 YVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
Y+D DLQ W + L EP L+E Q
Sbjct: 1622 YMDCR-DLQTTWQMIYHLFEP--ELKEFSQ 1648
>gi|419417861|ref|ZP_13958250.1| ribonuclease III [Helicobacter pylori NCTC 11637 = CCUG 17874]
gi|384375277|gb|EIE30581.1| ribonuclease III [Helicobacter pylori NCTC 11637 = CCUG 17874]
Length = 239
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D ++ VS + + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEE--ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
AL+KL ++
Sbjct: 229 YYALQKLKEA 238
>gi|376336568|gb|AFB32889.1| hypothetical protein 0_6448_02, partial [Larix decidua]
gi|376336570|gb|AFB32890.1| hypothetical protein 0_6448_02, partial [Larix decidua]
gi|376336572|gb|AFB32891.1| hypothetical protein 0_6448_02, partial [Larix decidua]
Length = 150
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
G KAPKVL DIVESIA AI++D D K+W +F+ LL+P+VT E L PV L +
Sbjct: 6 GDFKAPKVLGDIVESIAGAIFLDKVLDTAKVWEVFQPLLQPMVTPETLPM--HPVRELQE 63
Query: 214 LCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 264
CQ+ + ++ K R V+VDG + A + QK++A+ AAR AL
Sbjct: 64 RCQQQAEGLEYKASRTGNMATVEVFVDGVQIGFAQNPQKKMAQKLAARNAL 114
>gi|361066573|gb|AEW07598.1| Pinus taeda anonymous locus 0_6448_02 genomic sequence
Length = 150
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
G KAPKVL DIVESIA AI++D D K+W +F+ LL+P+VT E L PV L +
Sbjct: 6 GDFKAPKVLGDIVESIAGAIFLDKVLDTAKVWEVFQPLLQPMVTPETLPM--HPVRELQE 63
Query: 214 LCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 264
CQ+ + ++ K R V+VDG + A + QK++A+ AAR AL
Sbjct: 64 RCQQQAEGLEYKASRTGNMATVEVFVDGVQIGFAQNPQKKMAQKLAARNAL 114
>gi|302687578|ref|XP_003033469.1| hypothetical protein SCHCODRAFT_37756 [Schizophyllum commune H4-8]
gi|300107163|gb|EFI98566.1| hypothetical protein SCHCODRAFT_37756, partial [Schizophyllum commune
H4-8]
Length = 1343
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 98/187 (52%), Gaps = 42/187 (22%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
YVE ++ Y F+ K LL EALTH+SY + + SY RLEF+GDA L +A++ Y+F +
Sbjct: 1129 YVERMLGYTFERKALLIEALTHASYQEPLPTPSYGRLEFLGDAVLDMAVTPYIFASKKNY 1188
Query: 95 DPGQLSLLRAANISTEKLA------RVAV-KHG--------------------FYKFVRH 127
PG + L R+A ++ LA +VAV KH ++ + H
Sbjct: 1189 SPGHIHLRRSAAVNMHFLAFVCLRAKVAVDKHMPRPTAPDWRVQMATESQDIYLWQCMLH 1248
Query: 128 SAAA-LDDKVKEFAE--AVSQEDNTAVYGGSI---------KAPKVLADIVESIAAAIYV 175
S++ +DD+ FA + +E + A+ G I +APK +D+VES+ A+++
Sbjct: 1249 SSSTVIDDQNNTFARFRRLEKEISEALETGDIFPWAALTRMQAPKFFSDVVESLIGAVFL 1308
Query: 176 DIDFDLQ 182
D + D++
Sbjct: 1309 DAEGDME 1315
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ A+T + +YQRLE +GD L +S ++ YP G L+ + +S +
Sbjct: 958 LMSVAMTAPVSQEPVNYQRLETMGDTVLKYLVSIQLYAEYPLWHEGYLAKQKDHTVSNVR 1017
Query: 112 LARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK--VLADIVESI 169
LA+++V+ ++++ K K+ +S + + K VLAD++ES+
Sbjct: 1018 LAKISVRRHIFQWIIREKNKPKKKKKKDNNQLSTKGTVLKITSELLLTKLSVLADVIESL 1077
Query: 170 AAAIYVDIDFDLQK 183
A YV L +
Sbjct: 1078 IGAAYVHGGLSLGR 1091
>gi|226294068|gb|EEH49488.1| Dicer [Paracoccidioides brasiliensis Pb18]
Length = 1423
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 22/237 (9%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+ Y FK RLL A TH+SY S YQRLEF+GD+ L + +++ YP DP
Sbjct: 1147 LGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYPDRDPQW 1206
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE-----DNTAVYG 153
L+ + A +S + L VAVK G ++ + + + AL ++ +AE + D+ +
Sbjct: 1207 LTEHKMAMVSNKFLGAVAVKLGLHRHLLYFSKALLGQITRYAEEIEATETESIDSPDFWT 1266
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQPVTL 210
+ PK L D++E+ AI+VD +F + + F+ L+ +++ + P
Sbjct: 1267 TTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQQCLKKYFEDMSIYDTFANKHPTA- 1325
Query: 211 LFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+VD ++R +A+V + FVA + AK+ A+ AL KL
Sbjct: 1326 --------SGEVDSVDAAEHRV-LAAVIIHDEFVAEGIASSAGYAKVKASENALAKL 1373
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L ++ S +F D + R I + L A+ G Y+FVR
Sbjct: 977 NYERLEFLGDCFLKMSTSISLFAMNADDDEFDFHVKRMCLICNQNLFNTAMSLGIYEFVR 1036
Query: 127 HSAAALDDKVKEFAEAVS--QEDNTAVYGGSIKAPKVLADIVESIAAA 172
+ + E + + + TA S+ A K +ADI E++ A
Sbjct: 1037 TQGFSRRNWYPEGIKLLQGKAKSETAENKHSL-ADKSIADICEALIGA 1083
>gi|340514590|gb|EGR44851.1| predicted protein [Trichoderma reesei QM6a]
Length = 1416
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 17/173 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
V I Y FK L A H SY + YQRLEF+GD L +A+ +++F +P+ D
Sbjct: 1128 VAEITGYRFKAAPLARSAFRHPSYVFENNIRDYQRLEFLGDGLLDMAIVDFLFKRFPEAD 1187
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTA----- 150
P L+ + A +S + L + VK G +K + + ++L + +A + Q + TA
Sbjct: 1188 PKWLTEHKTAMVSNQFLGCLCVKLGLHKHILLATSSLLGDIGRYAAQLEQAEETARQTLR 1247
Query: 151 ---------VYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194
+ + PKVLAD+VE++ A++VD ++ + F ++P
Sbjct: 1248 AEAESIPQNFWVDVPQPPKVLADVVEALVGAMFVDSEYSFSVVLDFFTKFIQP 1300
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A + VF +P D + + R + + L + AV+ G ++R
Sbjct: 965 NYERLEFLGDTFLKMATTISVFTLFPTADEFEYHVTRMVMLCNQNLFKHAVEKGMPAYIR 1024
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGS--IKAPKVLADIVESIAAAIYV 175
A D+ + ++ + A S + K +AD+ E++ A Y+
Sbjct: 1025 TKAF---DRRTWYPSNMTLKRGKAAKTESKHCLSHKSIADVCEALIGAAYM 1072
>gi|227517298|ref|ZP_03947347.1| ribonuclease III [Enterococcus faecalis TX0104]
gi|227554519|ref|ZP_03984566.1| ribonuclease III [Enterococcus faecalis HH22]
gi|229547475|ref|ZP_04436200.1| ribonuclease III [Enterococcus faecalis TX1322]
gi|229548050|ref|ZP_04436775.1| ribonuclease III [Enterococcus faecalis ATCC 29200]
gi|256854772|ref|ZP_05560136.1| ribonuclease III [Enterococcus faecalis T8]
gi|293385103|ref|ZP_06630929.1| ribonuclease III [Enterococcus faecalis R712]
gi|293389076|ref|ZP_06633548.1| ribonuclease III [Enterococcus faecalis S613]
gi|307270584|ref|ZP_07551882.1| ribonuclease III [Enterococcus faecalis TX4248]
gi|307273593|ref|ZP_07554821.1| ribonuclease III [Enterococcus faecalis TX0855]
gi|307284870|ref|ZP_07565026.1| ribonuclease III [Enterococcus faecalis TX0860]
gi|307288870|ref|ZP_07568843.1| ribonuclease III [Enterococcus faecalis TX0109]
gi|307292116|ref|ZP_07571982.1| ribonuclease III [Enterococcus faecalis TX0411]
gi|312902145|ref|ZP_07761405.1| ribonuclease III [Enterococcus faecalis TX0470]
gi|312905399|ref|ZP_07764513.1| ribonuclease III [Enterococcus faecalis TX0635]
gi|312906714|ref|ZP_07765714.1| ribonuclease III [Enterococcus faecalis DAPTO 512]
gi|312910825|ref|ZP_07769661.1| ribonuclease III [Enterococcus faecalis DAPTO 516]
gi|312953196|ref|ZP_07772042.1| ribonuclease III [Enterococcus faecalis TX0102]
gi|384514329|ref|YP_005709422.1| ribonuclease III [Enterococcus faecalis OG1RF]
gi|384516896|ref|YP_005704201.1| ribonuclease III [Enterococcus faecalis 62]
gi|397701246|ref|YP_006539034.1| ribonuclease III [Enterococcus faecalis D32]
gi|422687023|ref|ZP_16745213.1| ribonuclease III [Enterococcus faecalis TX4000]
gi|422689979|ref|ZP_16748069.1| ribonuclease III [Enterococcus faecalis TX0630]
gi|422692405|ref|ZP_16750426.1| ribonuclease III [Enterococcus faecalis TX0031]
gi|422696091|ref|ZP_16754068.1| ribonuclease III [Enterococcus faecalis TX4244]
gi|422698495|ref|ZP_16756387.1| ribonuclease III [Enterococcus faecalis TX1346]
gi|422700459|ref|ZP_16758306.1| ribonuclease III [Enterococcus faecalis TX1342]
gi|422704076|ref|ZP_16761891.1| ribonuclease III [Enterococcus faecalis TX1302]
gi|422708000|ref|ZP_16765534.1| ribonuclease III [Enterococcus faecalis TX0043]
gi|422711137|ref|ZP_16768070.1| ribonuclease III [Enterococcus faecalis TX0027]
gi|422713897|ref|ZP_16770645.1| ribonuclease III [Enterococcus faecalis TX0309A]
gi|422718478|ref|ZP_16775131.1| ribonuclease III [Enterococcus faecalis TX0309B]
gi|422720836|ref|ZP_16777443.1| ribonuclease III [Enterococcus faecalis TX0017]
gi|422723566|ref|ZP_16780101.1| ribonuclease III [Enterococcus faecalis TX2137]
gi|422725696|ref|ZP_16782154.1| ribonuclease III [Enterococcus faecalis TX0312]
gi|422728465|ref|ZP_16784882.1| ribonuclease III [Enterococcus faecalis TX0012]
gi|422732835|ref|ZP_16789164.1| ribonuclease III [Enterococcus faecalis TX0645]
gi|422736033|ref|ZP_16792298.1| ribonuclease III [Enterococcus faecalis TX1341]
gi|422738680|ref|ZP_16793871.1| ribonuclease III [Enterococcus faecalis TX2141]
gi|422868345|ref|ZP_16914888.1| ribonuclease III [Enterococcus faecalis TX1467]
gi|424674100|ref|ZP_18111026.1| ribonuclease III [Enterococcus faecalis 599]
gi|424677347|ref|ZP_18114199.1| ribonuclease III [Enterococcus faecalis ERV103]
gi|424681039|ref|ZP_18117835.1| ribonuclease III [Enterococcus faecalis ERV116]
gi|424685288|ref|ZP_18121988.1| ribonuclease III [Enterococcus faecalis ERV129]
gi|424688592|ref|ZP_18125197.1| ribonuclease III [Enterococcus faecalis ERV25]
gi|424690566|ref|ZP_18127098.1| ribonuclease III [Enterococcus faecalis ERV31]
gi|424694302|ref|ZP_18130705.1| ribonuclease III [Enterococcus faecalis ERV37]
gi|424697969|ref|ZP_18134281.1| ribonuclease III [Enterococcus faecalis ERV41]
gi|424701524|ref|ZP_18137696.1| ribonuclease III [Enterococcus faecalis ERV62]
gi|424704525|ref|ZP_18140620.1| ribonuclease III [Enterococcus faecalis ERV63]
gi|424711652|ref|ZP_18143864.1| ribonuclease III [Enterococcus faecalis ERV65]
gi|424716431|ref|ZP_18145742.1| ribonuclease III [Enterococcus faecalis ERV68]
gi|424721947|ref|ZP_18151014.1| ribonuclease III [Enterococcus faecalis ERV72]
gi|424724735|ref|ZP_18153673.1| ribonuclease III [Enterococcus faecalis ERV73]
gi|424727557|ref|ZP_18156186.1| ribonuclease III [Enterococcus faecalis ERV81]
gi|424744501|ref|ZP_18172795.1| ribonuclease III [Enterococcus faecalis ERV85]
gi|424753913|ref|ZP_18181842.1| ribonuclease III [Enterococcus faecalis ERV93]
gi|424759045|ref|ZP_18186718.1| ribonuclease III [Enterococcus faecalis R508]
gi|430360155|ref|ZP_19426132.1| ribonuclease III [Enterococcus faecalis OG1X]
gi|430366186|ref|ZP_19427367.1| ribonuclease III [Enterococcus faecalis M7]
gi|227075305|gb|EEI13268.1| ribonuclease III [Enterococcus faecalis TX0104]
gi|227176317|gb|EEI57289.1| ribonuclease III [Enterococcus faecalis HH22]
gi|229306839|gb|EEN72835.1| ribonuclease III [Enterococcus faecalis ATCC 29200]
gi|229307399|gb|EEN73386.1| ribonuclease III [Enterococcus faecalis TX1322]
gi|256710332|gb|EEU25376.1| ribonuclease III [Enterococcus faecalis T8]
gi|291077580|gb|EFE14944.1| ribonuclease III [Enterococcus faecalis R712]
gi|291081544|gb|EFE18507.1| ribonuclease III [Enterococcus faecalis S613]
gi|306496769|gb|EFM66320.1| ribonuclease III [Enterococcus faecalis TX0411]
gi|306500142|gb|EFM69486.1| ribonuclease III [Enterococcus faecalis TX0109]
gi|306503129|gb|EFM72386.1| ribonuclease III [Enterococcus faecalis TX0860]
gi|306509606|gb|EFM78648.1| ribonuclease III [Enterococcus faecalis TX0855]
gi|306513165|gb|EFM81799.1| ribonuclease III [Enterococcus faecalis TX4248]
gi|310627362|gb|EFQ10645.1| ribonuclease III [Enterococcus faecalis DAPTO 512]
gi|310628813|gb|EFQ12096.1| ribonuclease III [Enterococcus faecalis TX0102]
gi|310631128|gb|EFQ14411.1| ribonuclease III [Enterococcus faecalis TX0635]
gi|311288848|gb|EFQ67404.1| ribonuclease III [Enterococcus faecalis DAPTO 516]
gi|311290809|gb|EFQ69365.1| ribonuclease III [Enterococcus faecalis TX0470]
gi|315026454|gb|EFT38386.1| ribonuclease III [Enterococcus faecalis TX2137]
gi|315028377|gb|EFT40309.1| ribonuclease III [Enterococcus faecalis TX4000]
gi|315031785|gb|EFT43717.1| ribonuclease III [Enterococcus faecalis TX0017]
gi|315034802|gb|EFT46734.1| ribonuclease III [Enterococcus faecalis TX0027]
gi|315145468|gb|EFT89484.1| ribonuclease III [Enterococcus faecalis TX2141]
gi|315146605|gb|EFT90621.1| ribonuclease III [Enterococcus faecalis TX4244]
gi|315151034|gb|EFT95050.1| ribonuclease III [Enterococcus faecalis TX0012]
gi|315152764|gb|EFT96780.1| ribonuclease III [Enterococcus faecalis TX0031]
gi|315154690|gb|EFT98706.1| ribonuclease III [Enterococcus faecalis TX0043]
gi|315159400|gb|EFU03417.1| ribonuclease III [Enterococcus faecalis TX0312]
gi|315161159|gb|EFU05176.1| ribonuclease III [Enterococcus faecalis TX0645]
gi|315164397|gb|EFU08414.1| ribonuclease III [Enterococcus faecalis TX1302]
gi|315167205|gb|EFU11222.1| ribonuclease III [Enterococcus faecalis TX1341]
gi|315171217|gb|EFU15234.1| ribonuclease III [Enterococcus faecalis TX1342]
gi|315172944|gb|EFU16961.1| ribonuclease III [Enterococcus faecalis TX1346]
gi|315573246|gb|EFU85437.1| ribonuclease III [Enterococcus faecalis TX0309B]
gi|315577147|gb|EFU89338.1| ribonuclease III [Enterococcus faecalis TX0630]
gi|315581180|gb|EFU93371.1| ribonuclease III [Enterococcus faecalis TX0309A]
gi|323479029|gb|ADX78468.1| ribonuclease III [Enterococcus faecalis 62]
gi|327536218|gb|AEA95052.1| ribonuclease III [Enterococcus faecalis OG1RF]
gi|329575676|gb|EGG57203.1| ribonuclease III [Enterococcus faecalis TX1467]
gi|397337885|gb|AFO45557.1| ribonuclease III [Enterococcus faecalis D32]
gi|402352044|gb|EJU86909.1| ribonuclease III [Enterococcus faecalis 599]
gi|402352426|gb|EJU87277.1| ribonuclease III [Enterococcus faecalis ERV116]
gi|402354640|gb|EJU89443.1| ribonuclease III [Enterococcus faecalis ERV103]
gi|402359269|gb|EJU93911.1| ribonuclease III [Enterococcus faecalis ERV129]
gi|402360051|gb|EJU94660.1| ribonuclease III [Enterococcus faecalis ERV25]
gi|402363764|gb|EJU98222.1| ribonuclease III [Enterococcus faecalis ERV31]
gi|402370958|gb|EJV05137.1| ribonuclease III [Enterococcus faecalis ERV37]
gi|402371555|gb|EJV05712.1| ribonuclease III [Enterococcus faecalis ERV62]
gi|402374205|gb|EJV08241.1| ribonuclease III [Enterococcus faecalis ERV41]
gi|402381547|gb|EJV15250.1| ribonuclease III [Enterococcus faecalis ERV63]
gi|402383084|gb|EJV16701.1| ribonuclease III [Enterococcus faecalis ERV65]
gi|402387948|gb|EJV21400.1| ribonuclease III [Enterococcus faecalis ERV68]
gi|402389984|gb|EJV23356.1| ribonuclease III [Enterococcus faecalis ERV72]
gi|402393981|gb|EJV27183.1| ribonuclease III [Enterococcus faecalis ERV73]
gi|402396232|gb|EJV29301.1| ribonuclease III [Enterococcus faecalis ERV81]
gi|402398832|gb|EJV31749.1| ribonuclease III [Enterococcus faecalis ERV85]
gi|402403439|gb|EJV36113.1| ribonuclease III [Enterococcus faecalis ERV93]
gi|402405221|gb|EJV37819.1| ribonuclease III [Enterococcus faecalis R508]
gi|429513067|gb|ELA02660.1| ribonuclease III [Enterococcus faecalis OG1X]
gi|429517200|gb|ELA06667.1| ribonuclease III [Enterococcus faecalis M7]
Length = 243
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 116/240 (48%), Gaps = 43/240 (17%)
Query: 47 FKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
F + LLE+A THSSY + Y +RLEF+GDA L L +S Y++L +P+L G+L+
Sbjct: 30 FHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVSQYLYLKFPELPEGKLT 89
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
+RAA + + LA+ A + F ++ L K +E + GG +A
Sbjct: 90 KMRAAIVREDSLAKFAKECHFDNYI------LLGKGEEAS------------GGRTRAS- 130
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQPQPVT 209
+L D+ E+ A+Y+D K ++ F ++ L+E+ Q+ V+
Sbjct: 131 LLCDLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHEMDHKTQLQEVLQRKGDVS 190
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
+ ++L ++ G D R VY++G + + K++A+ +AA AL+ + Q
Sbjct: 191 IEYRLIKEEGPAHD-------RTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSIPQ 243
>gi|80979123|gb|ABB54764.1| Dicer-2 [Drosophila yakuba]
Length = 1719
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 57/242 (23%)
Query: 9 PRATVTDYRLLKEAMLTSLPSPEMEDAVF---YVENIINYNFKNKRLLEEALTHSSYTD- 64
P + D L M ++ + E++ + ++EN + Y FK++ L +ALTH S+
Sbjct: 1400 PLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYTFKDRGYLLQALTHPSFPTN 1459
Query: 65 --STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFY 122
+ YQ LEFIGDA L +S Y+F +++PG L+ LR+A ++ LA + V+H +
Sbjct: 1460 RITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLH 1519
Query: 123 KFVRHSAAALDDKVKEFAE----------------------------------------- 141
F+ A L + + +F +
Sbjct: 1520 FFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADVQSTTLDLDDDLDMTDLKNA 1579
Query: 142 --AVSQED--NTAVYGG-----SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
++S E+ N G ++ PK L D++E++ AAIY+D DLQ+ W + L
Sbjct: 1580 LKSISHEEEKNDPPKGBFNMSTNVDVPKALGDVLEALIAAIYLDCR-DLQRTWEVIFNLF 1638
Query: 193 EP 194
+P
Sbjct: 1639 KP 1640
>gi|421716750|ref|ZP_16156059.1| ribonuclease III [Helicobacter pylori R037c]
gi|407219971|gb|EKE89782.1| ribonuclease III [Helicobacter pylori R037c]
Length = 239
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+ L+KL ++
Sbjct: 229 YQVLQKLKEA 238
>gi|225019245|ref|ZP_03708437.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
DSM 5476]
gi|224947876|gb|EEG29085.1| hypothetical protein CLOSTMETH_03198 [Clostridium methylpentosum
DSM 5476]
Length = 228
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 120/241 (49%), Gaps = 33/241 (13%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYPQ 93
E I Y F N++LLE+ALTHSS+T+ T +RLEF+GD+ + L ++N++F+ +P
Sbjct: 5 EKTIGYTFHNQKLLEQALTHSSFTNETGRHHHKNNERLEFLGDSVVSLIIANHLFVNFPD 64
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
+ G+L+ LRA+ + LA A + + + K +E + + N
Sbjct: 65 MPEGELTKLRASLVCDRSLAEFAGR------IDLGNQLIMGKGEEHSGGRQRRSN----- 113
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
L D E++ AIY+D + + +++ G + + L + + T L +
Sbjct: 114 --------LEDAFEALVGAIYLDGGLEAARSFVL--GFIPKTLDLNSISRVTDYKTALQE 163
Query: 214 LCQKNGKQ----VDIKHWRKNRKNI--ASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+ QKN ++ V + + + A V+++ + + + S + K+ A+ NAA++ALE +
Sbjct: 164 IIQKNPEEKLSYVLVSESGPDHDKMFEAEVHLNSNVIGTGSGKSKKQAEQNAAKQALELM 223
Query: 268 A 268
Sbjct: 224 G 224
>gi|80979133|gb|ABB54769.1| Dicer-2 [Drosophila teissieri]
Length = 1719
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 107/242 (44%), Gaps = 57/242 (23%)
Query: 9 PRATVTDYRLLKEAMLTSLPSPEMEDAVF---YVENIINYNFKNKRLLEEALTHSSYTD- 64
P + D L M ++ + E++ + ++EN + Y FK++ L +ALTH S+
Sbjct: 1400 PLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYTFKDRGYLLQALTHPSFPTN 1459
Query: 65 --STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFY 122
+ YQ LEFIGDA L +S Y+F +++PG L+ LR+A ++ LA + V+H +
Sbjct: 1460 RITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLH 1519
Query: 123 KFVRHSAAALDDKVKEFAE----------------------------------------- 141
F+ A L + + +F +
Sbjct: 1520 FFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADVQPTTLDLDDDLDMTDLKNA 1579
Query: 142 --AVSQED--NTAVYG-----GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
++S E+ N G ++ PK L D++E + AAIY+D DLQ+ W + L
Sbjct: 1580 LKSISHEEEQNDPAKGDFNMSTNVDVPKALGDVLEXLIAAIYLDCR-DLQRTWEVIFNLF 1638
Query: 193 EP 194
+P
Sbjct: 1639 KP 1640
>gi|227892635|ref|ZP_04010440.1| ribonuclease III [Lactobacillus ultunensis DSM 16047]
gi|227865567|gb|EEJ72988.1| ribonuclease III [Lactobacillus ultunensis DSM 16047]
Length = 228
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 99/202 (49%), Gaps = 28/202 (13%)
Query: 44 NYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
N F N++LLEEA THSSY++ Y++LEF+GDA L LA+S+Y++ YP+L+ G
Sbjct: 15 NIEFNNEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAVSDYLYRHYPKLNEG 74
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157
+L+ LR+ + TE + A++ GF K + N G+ K
Sbjct: 75 ELTRLRSNIVRTEGFSEFAIECGFQKEIHLG-------------------NGEEKAGARK 115
Query: 158 APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQK 217
+L D+ E+ A+++D + + + P++ E T L +L Q+
Sbjct: 116 RKTLLEDVFEAFNGALFLDQ--GMPAVQHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQ 173
Query: 218 NGKQVDIKHWRKNRKNIASVYV 239
NG VDI++ + + S +V
Sbjct: 174 NGP-VDIEYTVVSESQLPSHFV 194
>gi|289450366|ref|YP_003474966.1| ribonuclease III [Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289184913|gb|ADC91338.1| ribonuclease III [Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 245
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 119/261 (45%), Gaps = 49/261 (18%)
Query: 28 PSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGL 81
PS + + + EN I Y+FKNK+ L EALTHS+Y+ S +RLEF+GD LGL
Sbjct: 7 PSKDWLEQICNFENKIGYSFKNKKYLIEALTHSTYSYEHSMYGLECNERLEFLGDLVLGL 66
Query: 82 ALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE 141
+ N++F +P G+LS L+AA + LA VA H + E +
Sbjct: 67 TVGNHLFKTFPTYPEGKLSKLKAALVCEPTLAIVA--HNW----------------ELDK 108
Query: 142 AVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT---- 197
+ GG K P LAD E++ A++ D DF + +I R LEP++
Sbjct: 109 VLLLGKGEETSGGRNK-PSSLADATEAVLGAVFCDADF-VAAATVILRA-LEPLIQEAVA 165
Query: 198 -----------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVAS 246
LE++Q + L F L + G H + I Y+ +A+
Sbjct: 166 GNLVYDYKSALLEKIQTKYHSSQLRFVLLDETGPA----HSPSFKMGI---YLVNDLLAT 218
Query: 247 ASSEQKEIAKLNAAREALEKL 267
A K+ A+ AA++AL+ L
Sbjct: 219 AIGSSKKEAEQIAAKQALQLL 239
>gi|256847360|ref|ZP_05552806.1| ribonuclease III [Lactobacillus coleohominis 101-4-CHN]
gi|256716024|gb|EEU30999.1| ribonuclease III [Lactobacillus coleohominis 101-4-CHN]
Length = 233
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 119/247 (48%), Gaps = 43/247 (17%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAY 91
Y+ + + +F+N LL EA T +SY + Y+R+EF+GDA L L +S Y++ Y
Sbjct: 8 YLADEFDIHFQNPDLLAEAFTQASYVNEHPEQHLKYYERIEFLGDAVLQLFVSEYIYRRY 67
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV 151
P+L G+L+ LRAA + + ++ A + F +++R K +E A
Sbjct: 68 PELLQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLG------KGEEMA----------- 110
Query: 152 YGGSIKAPKVLADIVESIAAAIYVDIDFD----------LQKLWM-IFRGLLEPIVTLEE 200
G+ P +L DI ES A+Y+D D KL M F ++ +L+E
Sbjct: 111 --GARNRPGLLCDIFESFIGALYLDQGRDAVERFIHRVIFPKLDMGWFDHAVDTKTSLQE 168
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
Q+ V + + L + G + + ++ N V DG +A + K+ A+++AA
Sbjct: 169 FLQRDGDVDIEYHLLDETGSE-NAPEFKVN------VSADGQVLAQGTGSSKKHAEMDAA 221
Query: 261 REALEKL 267
+AL+KL
Sbjct: 222 AQALKKL 228
>gi|308234556|ref|ZP_07665293.1| ribonuclease III [Atopobium vaginae DSM 15829]
gi|328944154|ref|ZP_08241619.1| ribonuclease III [Atopobium vaginae DSM 15829]
gi|327492123|gb|EGF23897.1| ribonuclease III [Atopobium vaginae DSM 15829]
Length = 233
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 31/246 (12%)
Query: 32 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNYV 87
+E + + E II Y F+NKRL++ A+TH S + S SY+RLEF+GD+ LG ++ +
Sbjct: 3 VEARIKHAEQIIEYTFENKRLIQAAITHPSAVEGLPVSASYERLEFLGDSILGAIVATDM 62
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
F +P +D G L+ ++ + +S + L+ VA + G + + + V+ F A
Sbjct: 63 FEKFPGMDEGALTRMKISLVSGKTLSMVAEELGIGECIIFGDSEKGTGVRGFTSA----- 117
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP 207
L ++ ES+ A+Y++ ++ ++ R L P + E + P
Sbjct: 118 --------------LENVYESLVGALYLEAGYEPTVKFI--RRTLTPYMVPELAKHPISP 161
Query: 208 VTLLFKLCQKNGKQVDIKHWRKNR------KNIASVYVDGSFVASASSEQKEIAKLNAAR 261
+ L ++CQK + + ++V+VDG + + K+ ++ AA
Sbjct: 162 KSRLQEVCQKRFHIAPVYELEDETGPAHAPQFTSAVFVDGELMGRGTGSSKKESQSIAAL 221
Query: 262 EALEKL 267
AL+KL
Sbjct: 222 SALDKL 227
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K +L E+C K+ P Y++E + GP+H +F SAV + DG L G S+ K++++
Sbjct: 162 KSRLQEVCQKRFHIAPVYELEDETGPAHAPQFTSAVFV---DGELMGRGTGSSK-KESQS 217
Query: 354 SAA 356
AA
Sbjct: 218 IAA 220
>gi|206603814|gb|EDZ40294.1| Ribonuclease III [Leptospirillum sp. Group II '5-way CG']
Length = 247
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 118/248 (47%), Gaps = 39/248 (15%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD-------STSYQRLEFIGDAALGLALSNYVFLAY 91
+E+++ Y F+ LLEEA TH S+ + + + +RLEF+GD LGL ++ Y+ + Y
Sbjct: 10 LEDLLGYRFRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLVIAEYLMVTY 69
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV 151
P+ G LS + +S LA V+ G F+ L K +E + +
Sbjct: 70 PKYPEGVLSKFKGRIVSEPTLASVSRVLGIGGFL------LIGKGEELTQGREKSS---- 119
Query: 152 YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIVTLEELQQQPQPVT 209
+LAD +E++ AAIY+D D + ++I FR ++E V + +Q T
Sbjct: 120 ---------LLADAMEAVIAAIYLDSGLDAARTFIIGHFRSVIEQTVQEDSIQDYK---T 167
Query: 210 LLFKLCQKNGKQVDIKHWRKNRK-------NIASVYVDGSFVASASSEQKEIAKLNAARE 262
L + CQ+ + + + R ++A V + G S K+ A+ AA++
Sbjct: 168 DLQEYCQRELETLPVYQVMDQRGPDHQKEFDVA-VLIRGKIYGEGSGRSKKEAEQKAAKD 226
Query: 263 ALEKLAQS 270
AL +LA++
Sbjct: 227 ALSRLART 234
>gi|80979119|gb|ABB54762.1| Dicer-2 [Drosophila yakuba]
Length = 1719
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 57/242 (23%)
Query: 9 PRATVTDYRLLKEAMLTSLPSPEMEDAVF---YVENIINYNFKNKRLLEEALTHSSYTD- 64
P + D L M ++ + E++ + ++EN + Y FK++ L +ALTH S+
Sbjct: 1400 PLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYTFKDRGYLLQALTHPSFPTN 1459
Query: 65 --STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFY 122
+ YQ LEFIGDA L +S Y+F +++PG L+ LR+A ++ LA + V+H +
Sbjct: 1460 RITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLH 1519
Query: 123 KFVRHSAAALDDKVKEFAE----------------------------------------- 141
F+ A L + + +F +
Sbjct: 1520 FFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADVQSTTLDLDDDLDMTELKNA 1579
Query: 142 --AVSQED--NTAVYG-----GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
++S E+ N G ++ PK L D++E++ AAIY+D DLQ+ W + L
Sbjct: 1580 LKSISHEEEKNDPPKGDFNMSTNVDVPKALGDVLEALIAAIYLDCR-DLQRTWEVIFNLF 1638
Query: 193 EP 194
+P
Sbjct: 1639 KP 1640
>gi|225684422|gb|EEH22706.1| dicer [Paracoccidioides brasiliensis Pb03]
Length = 1469
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 22/237 (9%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+ Y FK RLL A TH+SY S YQRLEF+GD+ L + +++ YP DP
Sbjct: 1208 LGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLEFLGDSLLDMVCVEHLYHKYPDRDPQW 1267
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE-----DNTAVYG 153
L+ + A +S + L VAVK G ++ + + + AL ++ +AE + D+ +
Sbjct: 1268 LTEHKMAMVSNKFLGAVAVKLGLHRHLLYFSKALLGQITRYAEEIEATETESIDSPDFWT 1327
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQPVTL 210
+ PK L D++E+ AI+VD +F + + F+ L+ +++ + P
Sbjct: 1328 TTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQQCLKKYFEDMSIYDTFANKHPTA- 1386
Query: 211 LFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+VD ++R +A+V + FVA + AK+ A+ AL KL
Sbjct: 1387 --------SGEVDSVDAAEHRV-LAAVIIHDEFVAEGIASSAGYAKVKASENALSKL 1434
Score = 37.7 bits (86), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L ++ S +F D + R I + L A+ G Y+FVR
Sbjct: 1038 NYERLEFLGDCFLKMSTSISLFAMNADDDEFDFHVKRMCLICNQNLFNTAMSLGIYEFVR 1097
Query: 127 HSAAALDDKVKEFAEAVS--QEDNTAVYGGSIKAPKVLADIVESIAAA 172
+ + E + + + TA S+ A K +ADI E++ A
Sbjct: 1098 TQGFSRRNWYPEGIKLLQGKAKSETAENKHSL-ADKSIADICEALIGA 1144
>gi|313888515|ref|ZP_07822182.1| ribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845544|gb|EFR32938.1| ribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 231
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 116/252 (46%), Gaps = 57/252 (22%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLALSNYVFLAYP 92
+E +NY+FK+K LLE ALTHSSY + S +RLEF+GDA LGL + Y + +P
Sbjct: 9 LERKLNYDFKDKGLLETALTHSSYVNENKMKQYESNERLEFLGDAVLGLVIGEYFYKNFP 68
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ G L+ +RA +++ + L +A F+R +
Sbjct: 69 KDLEGSLTKMRAESVNEKVLFFIAKGLELGDFIRFGKGEKKN------------------ 110
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDF-----------------DLQKLWMI-FRGLLEP 194
GGS K AD +E++ AI++D +F D KL+ + F+ +L+
Sbjct: 111 GGS-KRESTSADALEALIGAIFLDSNFNNAKKIVLNLFDEFLKEDAYKLFNVDFKTMLQ- 168
Query: 195 IVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEI 254
EE+Q+ Q +KL ++ G D + +Y+D S + K+
Sbjct: 169 ----EEVQRSGQKAE--YKLVREEGPDNDKTFF-------TELYLDEVLAGKGSGKTKKE 215
Query: 255 AKLNAAREALEK 266
++ AAREALE+
Sbjct: 216 SQQEAAREALER 227
>gi|80979129|gb|ABB54767.1| Dicer-2 [Drosophila yakuba]
Length = 1719
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 57/242 (23%)
Query: 9 PRATVTDYRLLKEAMLTSLPSPEMEDAVF---YVENIINYNFKNKRLLEEALTHSSYTD- 64
P + D L M ++ + E++ + ++EN + Y FK++ L +ALTH S+
Sbjct: 1400 PLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYTFKDRGYLLQALTHPSFPTN 1459
Query: 65 --STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFY 122
+ YQ LEFIGDA L +S Y+F +++PG L+ LR+A ++ LA + V+H +
Sbjct: 1460 RITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLH 1519
Query: 123 KFVRHSAAALDDKVKEFAE----------------------------------------- 141
F+ A L + + +F +
Sbjct: 1520 FFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADVQSTTLDLDDDLDMTDLKNA 1579
Query: 142 --AVSQED--NTAVYG-----GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
++S E+ N G ++ PK L D++E++ AAIY+D DLQ+ W + L
Sbjct: 1580 LKSISHEEEKNDPPKGDFNMSTNVDVPKALGDVLEALIAAIYLDCR-DLQRTWEVIFNLF 1638
Query: 193 EP 194
+P
Sbjct: 1639 KP 1640
>gi|80979127|gb|ABB54766.1| Dicer-2 [Drosophila yakuba]
Length = 1719
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 57/242 (23%)
Query: 9 PRATVTDYRLLKEAMLTSLPSPEMEDAVF---YVENIINYNFKNKRLLEEALTHSSYTD- 64
P + D L M ++ + E++ + ++EN + Y FK++ L +ALTH S+
Sbjct: 1400 PLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYTFKDRGYLLQALTHPSFPTN 1459
Query: 65 --STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFY 122
+ YQ LEFIGDA L +S Y+F +++PG L+ LR+A ++ LA + V+H +
Sbjct: 1460 RITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLH 1519
Query: 123 KFVRHSAAALDDKVKEFAE----------------------------------------- 141
F+ A L + + +F +
Sbjct: 1520 FFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADVQSTTLDLDDDLDMTDLKNA 1579
Query: 142 --AVSQED--NTAVYG-----GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
++S E+ N G ++ PK L D++E++ AAIY+D DLQ+ W + L
Sbjct: 1580 LKSISHEEEKNEPPKGDFNMSTNVDVPKALGDVLEALIAAIYLDCR-DLQRTWEVIFNLF 1638
Query: 193 EP 194
+P
Sbjct: 1639 KP 1640
>gi|420415037|ref|ZP_14914153.1| ribonuclease III [Helicobacter pylori NQ4053]
gi|393034004|gb|EJB35065.1| ribonuclease III [Helicobacter pylori NQ4053]
Length = 239
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D ++ VS + + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEE--ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPSYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
AL+KL ++
Sbjct: 229 YYALQKLKEA 238
>gi|80979117|gb|ABB54761.1| Dicer-2 [Drosophila yakuba]
Length = 1719
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 57/242 (23%)
Query: 9 PRATVTDYRLLKEAMLTSLPSPEMEDAVF---YVENIINYNFKNKRLLEEALTHSSYTD- 64
P + D L M ++ + E++ + ++EN + Y FK++ L +ALTH S+
Sbjct: 1400 PLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYTFKDRGYLLQALTHPSFPTN 1459
Query: 65 --STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFY 122
+ YQ LEFIGDA L +S Y+F +++PG L+ LR+A ++ LA + V+H +
Sbjct: 1460 RITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLH 1519
Query: 123 KFVRHSAAALDDKVKEFAE----------------------------------------- 141
F+ A L + + +F +
Sbjct: 1520 FFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADVQSTTLDLDDDLDMTDLKNA 1579
Query: 142 --AVSQED--NTAVYG-----GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
++S E+ N G ++ PK L D++E++ AAIY+D DLQ+ W + L
Sbjct: 1580 LKSISHEEEKNDPPKGDFNMSTNVDVPKALGDVLEALIAAIYLDCR-DLQRTWEVIFNLF 1638
Query: 193 EP 194
+P
Sbjct: 1639 KP 1640
>gi|80979121|gb|ABB54763.1| Dicer-2 [Drosophila yakuba]
Length = 1719
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 57/242 (23%)
Query: 9 PRATVTDYRLLKEAMLTSLPSPEMEDAVF---YVENIINYNFKNKRLLEEALTHSSYTD- 64
P + D L M ++ + E++ + ++EN + Y FK++ L +ALTH S+
Sbjct: 1400 PLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYTFKDRGYLLQALTHPSFPTN 1459
Query: 65 --STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFY 122
+ YQ LEFIGDA L +S Y+F +++PG L+ LR+A ++ LA + V+H +
Sbjct: 1460 RITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLH 1519
Query: 123 KFVRHSAAALDDKVKEFAE----------------------------------------- 141
F+ A L + + +F +
Sbjct: 1520 FFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADVQSTTLDLDDDLDMTDLKNA 1579
Query: 142 --AVSQED--NTAVYG-----GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
++S E+ N G ++ PK L D++E++ AAIY+D DLQ+ W + L
Sbjct: 1580 LKSISHEEEKNDPPKGDFNMSTNVDVPKALGDVLEALIAAIYLDCR-DLQRTWEVIFNLF 1638
Query: 193 EP 194
+P
Sbjct: 1639 KP 1640
>gi|336053919|ref|YP_004562206.1| ribonuclease III [Lactobacillus kefiranofaciens ZW3]
gi|333957296|gb|AEG40104.1| Ribonuclease III [Lactobacillus kefiranofaciens ZW3]
Length = 228
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 33/235 (14%)
Query: 44 NYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
N F N++LLEEA THSSY++ S Y++LEF+GDA L LA+S+Y++ YP+L+ G
Sbjct: 15 NIKFNNEKLLEEAFTHSSYSNEHSNDGIRDYEKLEFLGDAVLELAVSDYLYRHYPKLNEG 74
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157
+L+ LR+ + TE + A++ GF + N G+ +
Sbjct: 75 ELTRLRSNIVRTEGFSEFAIECGFQTEIHLG-------------------NGEEKAGARR 115
Query: 158 APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQK 217
+L D+ E+ A+++D + + + P++ E T L +L Q+
Sbjct: 116 RKTLLEDVFEAFNGALFLDQ--GMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQ 173
Query: 218 NGKQVDIKHWRKNRKNIASVYV-----DGSFVASASSEQKEIAKLNAAREALEKL 267
+G VDI++ + + S +V + K+ A+ AA+ AL+K
Sbjct: 174 DGP-VDIEYSVVSESQLPSHFVVELKINNKVQTQGEGHNKKAAEQQAAKSALQKF 227
>gi|307198394|gb|EFN79336.1| Endoribonuclease dcr-1 [Harpegnathos saltator]
Length = 1479
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 27/169 (15%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E + Y F N+ L +A TH SY+ + YQRLEF+GDA L ++ +++ L
Sbjct: 1279 IEKRLGYKFNNRAYLLQAFTHPSYSVNRITDCYQRLEFLGDAVLDFLITCHIYEFCGNLS 1338
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED-------- 147
PG L+ LR+A ++ A +AV++G + + A L + + F + QED
Sbjct: 1339 PGALTDLRSALVNNITFACLAVRYGLHTCLLAYAPQLHEMINRFVKF--QEDRNYAINDE 1396
Query: 148 -----------NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLW 185
N A Y I PKVL D+ E++ AIY+D + +L K+W
Sbjct: 1397 LLWVLLEEEDCNIAEY---IDVPKVLGDLFETLIGAIYLDSNRNLAKVW 1442
>gi|80979125|gb|ABB54765.1| Dicer-2 [Drosophila yakuba]
Length = 1719
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 57/242 (23%)
Query: 9 PRATVTDYRLLKEAMLTSLPSPEMEDAVF---YVENIINYNFKNKRLLEEALTHSSYTD- 64
P + D L M ++ + E++ + ++EN + Y FK++ L +ALTH S+
Sbjct: 1400 PLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYTFKDRGYLLQALTHPSFPTN 1459
Query: 65 --STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFY 122
+ YQ LEFIGDA L +S Y+F +++PG L+ LR+A ++ LA + V+H +
Sbjct: 1460 RITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLH 1519
Query: 123 KFVRHSAAALDDKVKEFAE----------------------------------------- 141
F+ A L + + +F +
Sbjct: 1520 FFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADVQSTTLDLDDDLDMTDLKNA 1579
Query: 142 --AVSQED--NTAVYG-----GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
++S E+ N G ++ PK L D++E++ AAIY+D DLQ+ W + L
Sbjct: 1580 LKSISHEEEKNDPPKGDFNMSTNVDVPKALGDVLEALIAAIYLDCR-DLQRTWEVIFNLF 1638
Query: 193 EP 194
+P
Sbjct: 1639 KP 1640
>gi|195487840|ref|XP_002092062.1| Dcr-2 [Drosophila yakuba]
gi|194178163|gb|EDW91774.1| Dcr-2 [Drosophila yakuba]
Length = 1730
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 57/242 (23%)
Query: 9 PRATVTDYRLLKEAMLTSLPSPEMEDAVF---YVENIINYNFKNKRLLEEALTHSSYTD- 64
P + D L M ++ + E++ + ++EN + Y FK++ L +ALTH S+
Sbjct: 1411 PLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYTFKDRGYLLQALTHPSFPTN 1470
Query: 65 --STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFY 122
+ YQ LEFIGDA L +S Y+F +++PG L+ LR+A ++ LA + V+H +
Sbjct: 1471 RITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLH 1530
Query: 123 KFVRHSAAALDDKVKEFAE----------------------------------------- 141
F+ A L + + +F +
Sbjct: 1531 FFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADVQSTTLDLDDDLDMTDLKNA 1590
Query: 142 --AVSQED--NTAVYG-----GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
++S E+ N G ++ PK L D++E++ AAIY+D DLQ+ W + L
Sbjct: 1591 LKSISHEEEKNDPPKGDFNMSTNVDVPKALGDVLEALIAAIYLDCR-DLQRTWEVIFNLF 1649
Query: 193 EP 194
+P
Sbjct: 1650 KP 1651
>gi|322798617|gb|EFZ20221.1| hypothetical protein SINV_06556 [Solenopsis invicta]
Length = 386
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 94/194 (48%), Gaps = 26/194 (13%)
Query: 44 NYNFKNKRLLE-----EALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
N+N +N L+ +A TH SYT + YQRLEF+GDA L ++ Y++ L
Sbjct: 134 NHNLENSFLIVPYVIFQAFTHPSYTANGLTECYQRLEFLGDAILDFLITCYIYEKCGNLS 193
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
PG+L+ LR+A ++ A +AV++G + + A LD+ + F + QED V
Sbjct: 194 PGELTDLRSALVNNITFACLAVRYGLHIALLAYAPKLDEIIDRFVKF--QEDRDYVVNDE 251
Query: 156 ----------------IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLE 199
+ PKVL D+ ES+ AIY+D DL K+W I L+ +
Sbjct: 252 LLYVLIEEEECNLVEYVDVPKVLGDLFESLIGAIYLDSGKDLVKIWEIIYTLMHKEIDEF 311
Query: 200 ELQQQPQPVTLLFK 213
QPV ++++
Sbjct: 312 SRSIPKQPVRVIYE 325
>gi|295094866|emb|CBK83957.1| RNAse III [Coprococcus sp. ART55/1]
Length = 229
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 34/240 (14%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYP 92
+E I Y FK+ RLL ALTH+S+ + + SY+RLEF+GDA L +S+Y+F
Sbjct: 8 LEKRIGYEFKDIRLLITALTHTSFANELKVNKTESYERLEFLGDAILEYIVSDYLFRKKR 67
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ + G+L+ LRA+ + L++++ G+ KFV S A
Sbjct: 68 EYEEGKLTKLRASLVCEFTLSQISESLGYGKFVLLSKGE------------------AQT 109
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
GG + +L D+ ES+ A+Y+D D+ K + + + LL+ + T +
Sbjct: 110 GGRTRKS-ILCDLFESVLGAMYLDGGMDVAKKF-VHQFLLDDVETKSLFYDAKSTLQ--- 164
Query: 213 KLCQKNGKQ-----VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+ CQKNGK+ ++ K N+ ++ +DG A ++ ++ AA + L +L
Sbjct: 165 EFCQKNGKELKYELIEEKGPEHNKIFVSDALIDGQATARGEGSNRKNSEQMAAYKTLLQL 224
>gi|80979131|gb|ABB54768.1| Dicer-2 [Drosophila santomea]
Length = 1719
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 108/242 (44%), Gaps = 57/242 (23%)
Query: 9 PRATVTDYRLLKEAMLTSLPSPEMEDAVF---YVENIINYNFKNKRLLEEALTHSSYTD- 64
P + D L M ++ + E++ + ++EN + Y FK++ L +ALTH S+
Sbjct: 1400 PLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYTFKDRGYLLQALTHPSFPTN 1459
Query: 65 --STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFY 122
+ YQ LEFIGDA L +S Y+F +++PG L+ LR+A ++ LA + V+H +
Sbjct: 1460 RITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLH 1519
Query: 123 KFVRHSAAALDDKVKEFAE----------------------------------------- 141
F+ A L + + +F +
Sbjct: 1520 FFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADVQPTTLDLDDDLDMTDLKNA 1579
Query: 142 --AVSQED--NTAVYG-----GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
++S E+ N G ++ PK L D++E++ AAIY+D DLQ+ W + L
Sbjct: 1580 LKSISHEEEQNYPPKGDFNMSTNVDVPKALGDVLEALIAAIYLDCR-DLQRTWEVIFNLF 1638
Query: 193 EP 194
+P
Sbjct: 1639 KP 1640
>gi|198457361|ref|XP_001360634.2| GA19635 [Drosophila pseudoobscura pseudoobscura]
gi|198135949|gb|EAL25209.2| GA19635 [Drosophila pseudoobscura pseudoobscura]
Length = 1720
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 94/210 (44%), Gaps = 47/210 (22%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
Y+E + Y F+++ L +ALTH S+ + YQ LEFIGDA L +S Y+F +L
Sbjct: 1442 YLEQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDFLISAYIFENNNKL 1501
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA-------------- 140
PG+L+ LR+A ++ L + V+H + F+ A L + + +F
Sbjct: 1502 RPGELTDLRSALVNNTTLGCICVRHKLHLFILAENALLSETISKFVKFQESQGHRVTNHV 1561
Query: 141 ------------------EAVSQEDNTAVYGGSIKA---------PKVLADIVESIAAAI 173
E +N + G I A PK L D++E++ AA+
Sbjct: 1562 RFLLEERDVQPVILDLDEEVEMAMENDSGDGPPIGAFNLAQNVDVPKALGDVLEALIAAV 1621
Query: 174 YVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
Y+D DLQ W + L EP L+E Q
Sbjct: 1622 YMDCR-DLQTTWQMIYHLFEP--ELKEFSQ 1648
>gi|420455238|ref|ZP_14954068.1| ribonuclease III [Helicobacter pylori Hp A-14]
gi|393073588|gb|EJB74362.1| ribonuclease III [Helicobacter pylori Hp A-14]
Length = 239
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIMQNLLNRAYKCLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPSYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|426194802|gb|EKV44733.1| hypothetical protein AGABI2DRAFT_209093 [Agaricus bisporus var.
bisporus H97]
Length = 1524
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 133/290 (45%), Gaps = 59/290 (20%)
Query: 28 PSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALS 84
P + A++YVE ++ Y FK+K LL EALTH+SY + SY+R+EF+GD+ L + ++
Sbjct: 1202 PDKNIPSALYYVEKMLGYTFKHKVLLLEALTHASYQQDARTVSYERMEFLGDSVLDMVVT 1261
Query: 85 NYVFLAYPQ-LDPGQLSLLRAANISTEKLARVAVKHG----------------------- 120
+Y++ A + PG + L R++ ++T LA + +K
Sbjct: 1262 DYLYHAPGKNYSPGHIHLRRSSVVNTHFLAYICLKTSVKFDALMPRADDEGIELLADAQE 1321
Query: 121 --FYKFVRHSAAALDD----------KVKEFAEAVSQEDNTAVYGG--SIKAPKVLADIV 166
++ + HS++ + D K +E E D + ++APK +DI+
Sbjct: 1322 VMLWQCLLHSSSRIMDDQANTHTRFKKRREEIEEGLMNDTIFPWAALTRLQAPKFFSDII 1381
Query: 167 ESIAAAIYVDI--DFDLQKLWMIFRGLLEPIVTLEELQQQP----QPVTLLFKLCQKNGK 220
ES+ A+++D D D + + G+L TLE + PV+ + + K+ K
Sbjct: 1382 ESVIGAVFLDSNGDIDTARDVITKLGILP---TLERIVHDNVDVWHPVSRISQWASKHEK 1438
Query: 221 QVDIKHWRKNRKNIASVYVDGSF---------VASASSEQKEIAKLNAAR 261
++ + ++ SV VDG AS E K IA NA+R
Sbjct: 1439 KLGWQFEKERGVVKCSVLVDGEVEACAMDDYRGASTQDEVKLIAAENASR 1488
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 42/184 (22%)
Query: 27 LPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNY 86
+PSP ++D LL A+T SS + +YQRLE +GD L ++
Sbjct: 1002 MPSPSLQDIPL-------------ALLSNAMTASSAGEKYNYQRLETLGDTVLKFLVALQ 1048
Query: 87 VFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFV------------RHSAAALDD 134
V + YP G L+ + ++ LA+ + H Y+++ R+S L
Sbjct: 1049 VLVEYPLWHEGYLTKKKDHTVANVNLAKENINHRLYRWIIKEIMLGRKWRPRYSTKLLPP 1108
Query: 135 KVKEFAEAVSQEDNTAVYGGS-----------------IKAPKVLADIVESIAAAIYVDI 177
E + +E V G+ + K+LAD+VES+ A Y+
Sbjct: 1109 TTPLSEEKIVEELLMVVDEGAELSSKGAAKKKKKSKNQGLSTKILADVVESLIGAAYIHG 1168
Query: 178 DFDL 181
F L
Sbjct: 1169 GFPL 1172
>gi|89114026|gb|ABD61604.1| Dicer-1 [Drosophila melanogaster]
Length = 2043
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYIITRHLYEDPRQHSP 1999
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1716
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1717 HLRSKQVANLNLYRLGRR 1734
>gi|29377554|ref|NP_816708.1| ribonuclease III [Enterococcus faecalis V583]
gi|255970707|ref|ZP_05421293.1| ribonuclease III [Enterococcus faecalis T1]
gi|255974283|ref|ZP_05424869.1| ribonuclease III [Enterococcus faecalis T2]
gi|256618145|ref|ZP_05474991.1| ribonuclease III [Enterococcus faecalis ATCC 4200]
gi|256761074|ref|ZP_05501654.1| ribonuclease III [Enterococcus faecalis T3]
gi|256958378|ref|ZP_05562549.1| ribonuclease III [Enterococcus faecalis DS5]
gi|256960445|ref|ZP_05564616.1| ribonuclease III [Enterococcus faecalis Merz96]
gi|256962935|ref|ZP_05567106.1| ribonuclease III [Enterococcus faecalis HIP11704]
gi|257078311|ref|ZP_05572672.1| ribonuclease III [Enterococcus faecalis JH1]
gi|257080500|ref|ZP_05574861.1| ribonuclease III [Enterococcus faecalis E1Sol]
gi|257083236|ref|ZP_05577597.1| ribonuclease III [Enterococcus faecalis Fly1]
gi|257088212|ref|ZP_05582573.1| ribonuclease III [Enterococcus faecalis D6]
gi|257091337|ref|ZP_05585698.1| ribonuclease III [Enterococcus faecalis CH188]
gi|257417226|ref|ZP_05594220.1| ribonuclease III [Enterococcus faecalis ARO1/DG]
gi|257417943|ref|ZP_05594937.1| ribonuclease III [Enterococcus faecalis T11]
gi|257420449|ref|ZP_05597439.1| ribonuclease III [Enterococcus faecalis X98]
gi|294780225|ref|ZP_06745597.1| ribonuclease III [Enterococcus faecalis PC1.1]
gi|300861565|ref|ZP_07107649.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|428768209|ref|YP_007154320.1| ribonuclease III [Enterococcus faecalis str. Symbioflor 1]
gi|75541427|sp|Q82ZG1.1|RNC_ENTFA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|29345021|gb|AAO82778.1| ribonuclease III [Enterococcus faecalis V583]
gi|255961725|gb|EET94201.1| ribonuclease III [Enterococcus faecalis T1]
gi|255967155|gb|EET97777.1| ribonuclease III [Enterococcus faecalis T2]
gi|256597672|gb|EEU16848.1| ribonuclease III [Enterococcus faecalis ATCC 4200]
gi|256682325|gb|EEU22020.1| ribonuclease III [Enterococcus faecalis T3]
gi|256948874|gb|EEU65506.1| ribonuclease III [Enterococcus faecalis DS5]
gi|256950941|gb|EEU67573.1| ribonuclease III [Enterococcus faecalis Merz96]
gi|256953431|gb|EEU70063.1| ribonuclease III [Enterococcus faecalis HIP11704]
gi|256986341|gb|EEU73643.1| ribonuclease III [Enterococcus faecalis JH1]
gi|256988530|gb|EEU75832.1| ribonuclease III [Enterococcus faecalis E1Sol]
gi|256991266|gb|EEU78568.1| ribonuclease III [Enterococcus faecalis Fly1]
gi|256996242|gb|EEU83544.1| ribonuclease III [Enterococcus faecalis D6]
gi|257000149|gb|EEU86669.1| ribonuclease III [Enterococcus faecalis CH188]
gi|257159054|gb|EEU89014.1| ribonuclease III [Enterococcus faecalis ARO1/DG]
gi|257159771|gb|EEU89731.1| ribonuclease III [Enterococcus faecalis T11]
gi|257162273|gb|EEU92233.1| ribonuclease III [Enterococcus faecalis X98]
gi|294452768|gb|EFG21198.1| ribonuclease III [Enterococcus faecalis PC1.1]
gi|295114417|emb|CBL33054.1| RNAse III [Enterococcus sp. 7L76]
gi|300849026|gb|EFK76779.1| ribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|427186382|emb|CCO73606.1| ribonuclease III [Enterococcus faecalis str. Symbioflor 1]
Length = 230
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 116/240 (48%), Gaps = 43/240 (17%)
Query: 47 FKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
F + LLE+A THSSY + Y +RLEF+GDA L L +S Y++L +P+L G+L+
Sbjct: 17 FHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVSQYLYLKFPELPEGKLT 76
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
+RAA + + LA+ A + F ++ L K +E + GG +A
Sbjct: 77 KMRAAIVREDSLAKFAKECHFDNYI------LLGKGEEAS------------GGRTRAS- 117
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQPQPVT 209
+L D+ E+ A+Y+D K ++ F ++ L+E+ Q+ V+
Sbjct: 118 LLCDLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHEMDHKTQLQEVLQRKGDVS 177
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
+ ++L ++ G D R VY++G + + K++A+ +AA AL+ + Q
Sbjct: 178 IEYRLIKEEGPAHD-------RTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSIPQ 230
>gi|58337573|ref|YP_194158.1| ribonuclease III [Lactobacillus acidophilus NCFM]
gi|227904215|ref|ZP_04022020.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus
ATCC 4796]
gi|75432899|sp|Q5FJJ7.1|RNC_LACAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|58254890|gb|AAV43127.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus
NCFM]
gi|227868234|gb|EEJ75655.1| dsRNA-specific ribonuclease RNaseIII [Lactobacillus acidophilus
ATCC 4796]
Length = 228
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 33/190 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYP 92
++N N F N++LLEEA THSSY++ Y++LEF+GDA L LA+SNY++ YP
Sbjct: 10 LKNEYNIEFNNEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAVSNYLYRHYP 69
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+L+ G+L+ LR+ + TE + A++ GF K + N
Sbjct: 70 KLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLG-------------------NGEEK 110
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGL---LEPIVTLEELQQQPQPVT 209
G+ +L D+ E+ A+++D Q + + R L + P++ E T
Sbjct: 111 AGARNRKTLLEDVFEAFNGALFLD-----QGMPAVERFLHLTVYPLIAKGEFDDSRDYKT 165
Query: 210 LLFKLCQKNG 219
L +L Q+NG
Sbjct: 166 DLQELLQQNG 175
>gi|375008162|ref|YP_004981795.1| ribonuclease 3 [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359287011|gb|AEV18695.1| Ribonuclease 3 [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 246
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 116/246 (47%), Gaps = 43/246 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYP 92
++N I F+N++LL +A THSSY + +RLEF+GDA L L +S Y+F +P
Sbjct: 21 LQNKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQKFP 80
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ GQL+ LRAA + L + A AL F E V +
Sbjct: 81 HMSEGQLTKLRAAIVCEPSLVKF-------------ANALS-----FGELVLLGKGEELT 122
Query: 153 GGSIKAPKVLADIVESIAAAIYVD------IDFDLQKLW-----MIFRGLLEPIVTLEEL 201
GG + P +LAD+ E+ A+Y+D + F Q ++ F +++ L+EL
Sbjct: 123 GGRTR-PALLADVFEAFIGALYLDQGMEAVLHFLGQTIFPKIDEGAFSHVMDFKSQLQEL 181
Query: 202 QQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
Q+ TL + + ++ G N++ +A V ++G + K+ A+ +AA+
Sbjct: 182 VQRDGSGTLEYAILEEKGPA-------HNKEFVARVALNGQELGIGVGRSKKEAEQHAAQ 234
Query: 262 EALEKL 267
ALE L
Sbjct: 235 MALETL 240
>gi|89114022|gb|ABD61602.1| Dicer-1 [Drosophila melanogaster]
Length = 2043
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1716
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1717 HLRSKQVANLNLYRLGRR 1734
>gi|381183950|ref|ZP_09892635.1| ribonuclease III [Listeriaceae bacterium TTU M1-001]
gi|380316161|gb|EIA19595.1| ribonuclease III [Listeriaceae bacterium TTU M1-001]
Length = 230
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 45/243 (18%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQ------RLEFIGDAALGLALSNYVFLAYPQLDP 96
+ ++FKN LL+ A THSSY + ++ RLEF+GDA L L +S+Y+F YP +
Sbjct: 11 VGFDFKNIELLQNAFTHSSYVNEHRHENLKDNERLEFLGDAVLELTVSDYLFNKYPDMAE 70
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQ++ +RAA + L A F K++R K +E A GG
Sbjct: 71 GQMTKMRAAIVCEPSLVEFAEMVHFSKYIRLG------KGEEKA------------GGRT 112
Query: 157 KAPKVLADIVESIAAAIYVD------IDFDLQKLWM------IFRGLLEPIVTLEELQQQ 204
+ P +LAD+ ES A+Y+D I F L++L I+ ++ L+E+ Q+
Sbjct: 113 R-PALLADVFESFIGALYLDNGIQAVIRF-LERLVFPKIDTGIYMQTVDFKTQLQEIVQR 170
Query: 205 PQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 264
+ V + + + + G N+ A V V+G + + K+ A+ NAA A+
Sbjct: 171 DRDVLIQYDILGETGPA-------HNKAFEAQVVVNGQVLGKGTGRTKKQAEQNAAEYAI 223
Query: 265 EKL 267
++
Sbjct: 224 RQV 226
>gi|89114050|gb|ABD61616.1| Dicer-1 [Drosophila simulans]
Length = 2043
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1716
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1717 HLRSKQVANLNLYRLGRR 1734
>gi|89114042|gb|ABD61612.1| Dicer-1 [Drosophila simulans]
Length = 2043
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1716
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1717 HLRSKQVANLNLYRLGRR 1734
>gi|89114040|gb|ABD61611.1| Dicer-1 [Drosophila simulans]
Length = 2043
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1716
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1717 HLRSKQVANLNLYRLGRR 1734
>gi|227530552|ref|ZP_03960601.1| ribonuclease III [Lactobacillus vaginalis ATCC 49540]
gi|227349558|gb|EEJ39849.1| ribonuclease III [Lactobacillus vaginalis ATCC 49540]
Length = 251
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 126/274 (45%), Gaps = 57/274 (20%)
Query: 22 AMLTSLPSPEMEDAVFYVENIINY-------NFKNKRLLEEALTHSSYTDSTS------Y 68
A TSL + VF ++++ +Y +F N LL EA T +SY + Y
Sbjct: 6 AFFTSLTKRK---EVFTIKDLQDYLAKEFDIHFTNPDLLAEAFTQASYVNEHPHQGLKFY 62
Query: 69 QRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHS 128
+R+EF+GDA L L +S Y++ +P+L G+L+ LRAA + + ++ A + F +++R
Sbjct: 63 ERIEFLGDAVLELIVSEYIYKRFPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLG 122
Query: 129 AAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD------------ 176
+E A G+ + P +L DI ES A+Y+D
Sbjct: 123 HG------EEMA-------------GARQRPGLLCDIFESFIGALYLDQGRPAVEKFVRR 163
Query: 177 -IDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA 235
I L W F ++ +L+E Q+ V + + L Q++G + D ++ N
Sbjct: 164 VIFPKLDLGW--FDHAVDAKTSLQEFLQRDGDVDIEYHLLQESGTEND-PEFKVN----- 215
Query: 236 SVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
V DG + + K+ A++ AA +AL KL Q
Sbjct: 216 -VSADGKVIGEGTGSSKKHAEMKAASQALNKLRQ 248
>gi|89114020|gb|ABD61601.1| Dicer-1 [Drosophila melanogaster]
Length = 2043
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1716
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1717 HLRSKQVANLNLYRLGRR 1734
>gi|89114036|gb|ABD61609.1| Dicer-1 [Drosophila simulans]
Length = 2043
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1716
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1717 HLRSKQVANLNLYRLGRR 1734
>gi|89114028|gb|ABD61605.1| Dicer-1 [Drosophila melanogaster]
Length = 2043
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1716
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1717 HLRSKQVANLNLYRLGRR 1734
>gi|89114034|gb|ABD61608.1| Dicer-1 [Drosophila melanogaster]
Length = 2043
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1716
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1717 HLRSKQVANLNLYRLGRR 1734
>gi|89114032|gb|ABD61607.1| Dicer-1 [Drosophila melanogaster]
Length = 2043
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1716
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1717 HLRSKQVANLNLYRLGRR 1734
>gi|227890689|ref|ZP_04008494.1| ribonuclease III [Lactobacillus salivarius ATCC 11741]
gi|417810411|ref|ZP_12457090.1| ribonuclease III [Lactobacillus salivarius GJ-24]
gi|418961233|ref|ZP_13513120.1| ribonuclease III [Lactobacillus salivarius SMXD51]
gi|227867627|gb|EEJ75048.1| ribonuclease III [Lactobacillus salivarius ATCC 11741]
gi|335349207|gb|EGM50707.1| ribonuclease III [Lactobacillus salivarius GJ-24]
gi|380344900|gb|EIA33246.1| ribonuclease III [Lactobacillus salivarius SMXD51]
Length = 232
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 35/235 (14%)
Query: 47 FKNKRLLEEALTHSSYTDSTS--------YQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
FK+ LL+ A TH+SY + T Y+R+EF+GDA + L +S Y++ YP++ G+
Sbjct: 17 FKDVDLLDAAFTHASYVNETPERKKKLKYYERIEFLGDAVMQLCVSEYIYEHYPEMPEGK 76
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
+S LRAA + + ++ A++ F +++R ++K G + +
Sbjct: 77 MSRLRAAMVRADSFSKFAIECHFNEYIRLGKG--EEK-----------------GNARQR 117
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L DI ES A+Y+D D ++ ++ P + L T L ++ Q+N
Sbjct: 118 PSLLCDIFESFIGALYLDQGKD--EVVRFISKVIFPKLELGWFDHMMDNKTELQEVLQQN 175
Query: 219 GK------QVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
G+ +V++ R +V V+ + + K+ A+ AA +AL+KL
Sbjct: 176 GECKIKYNEVNVTGPDNERVYTMNVVVNNEVMGEGTGRTKKAAEQMAAYQALKKL 230
>gi|89114046|gb|ABD61614.1| Dicer-1 [Drosophila simulans]
Length = 2043
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1716
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1717 HLRSKQVANLNLYRLGRR 1734
>gi|89114024|gb|ABD61603.1| Dicer-1 [Drosophila melanogaster]
Length = 2043
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1716
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1717 HLRSKQVANLNLYRLGRR 1734
>gi|89114048|gb|ABD61615.1| Dicer-1 [Drosophila simulans]
Length = 2043
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1716
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1717 HLRSKQVANLNLYRLGRR 1734
>gi|89114030|gb|ABD61606.1| Dicer-1 [Drosophila melanogaster]
Length = 2043
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1716
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1717 HLRSKQVANLNLYRLGRR 1734
>gi|393201759|ref|YP_006463601.1| dsRNA-specific ribonuclease [Solibacillus silvestris StLB046]
gi|406664636|ref|ZP_11072411.1| Ribonuclease 3 [Bacillus isronensis B3W22]
gi|327441090|dbj|BAK17455.1| dsRNA-specific ribonuclease [Solibacillus silvestris StLB046]
gi|405387484|gb|EKB46908.1| Ribonuclease 3 [Bacillus isronensis B3W22]
Length = 253
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 118/249 (47%), Gaps = 43/249 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYP 92
+EN +N +F+NK LL +A THSSY + T +RLEF+GDA L L++S Y+F +P
Sbjct: 26 LENEMNIHFQNKDLLYQAFTHSSYVNEHRRKLFTDNERLEFLGDAVLELSVSKYLFEKFP 85
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ G+L+ LRA+ + L A + F +FV L K +E
Sbjct: 86 HMSEGELTKLRASIVCEPSLVVFANELNFGQFV------LLGKGEELT------------ 127
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEEL 201
G + P +LAD+ ES A+Y+D ++ ++ F +++ L+E+
Sbjct: 128 -GGRERPALLADVFESFVGALYLDQGLEVVVAFLERVVFPKVEVGAFSHVMDFKSQLQEI 186
Query: 202 QQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
QQ L +++ VD K NR ++ V ++ + + K+ A+ AA+
Sbjct: 187 IQQTNNGLLNYEI-------VDEKGPAHNRTFVSRVLLNSQELGIGRGKSKKEAEQQAAQ 239
Query: 262 EALEKLAQS 270
A+ L QS
Sbjct: 240 SAMLMLKQS 248
>gi|160934422|ref|ZP_02081809.1| hypothetical protein CLOLEP_03295 [Clostridium leptum DSM 753]
gi|156867095|gb|EDO60467.1| ribonuclease III [Clostridium leptum DSM 753]
Length = 237
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 117/246 (47%), Gaps = 42/246 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD-----STSYQRLEFIGDAALGLALSNYVFLAYPQ 93
+E + Y F+N +LL+ ALTHSSY + + S +RLEF+GDA L + +S+Y+F P
Sbjct: 17 LEENLGYAFQNPKLLKTALTHSSYANEAHNGTRSNERLEFLGDAVLSIVVSDYIFRNCPH 76
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
L G+L+ +RA+ + + L R + F+R S E N+
Sbjct: 77 LPEGELTKMRASLVCEKSLQRFSRVLEIGSFLRLSRG---------------EQNS---- 117
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIF-----------RGLLEPIVTLEELQ 202
G + +LAD E++ AAIY+D + + +++ + + L+E+
Sbjct: 118 GGAERSSILADAFEAVLAAIYLDGGMEKAREFVLRFTVPEMENPKPKAFKDYKTALQEIV 177
Query: 203 QQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262
QQ L + L ++G + KH+ + V+++ + + K+ A+ AARE
Sbjct: 178 QQNPEEKLNYVLVGESGPDHN-KHF------VVEVHLNSNVIGKGGGRSKKEAEQQAARE 230
Query: 263 ALEKLA 268
ALE +
Sbjct: 231 ALELMG 236
>gi|89114044|gb|ABD61613.1| Dicer-1 [Drosophila simulans]
Length = 2043
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1716
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1717 HLRSKQVANLNLYRLGRR 1734
>gi|89114038|gb|ABD61610.1| Dicer-1 [Drosophila simulans]
Length = 2043
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 3/103 (2%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1940 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 1999
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F
Sbjct: 2000 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2042
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1657 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1716
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1717 HLRSKQVANLNLYRLGRR 1734
>gi|367022572|ref|XP_003660571.1| hypothetical protein MYCTH_2299034 [Myceliophthora thermophila ATCC
42464]
gi|347007838|gb|AEO55326.1| hypothetical protein MYCTH_2299034 [Myceliophthora thermophila ATCC
42464]
Length = 1604
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 108/254 (42%), Gaps = 46/254 (18%)
Query: 16 YRLLKEAMLTSLP-SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYT----DSTSYQR 70
Y + A ++P SP D + Y F++ RLL A H +Y SYQR
Sbjct: 1247 YAAYRPAKWQTVPCSPAQIDMAARFRERMGYAFRHPRLLRSAFQHPAYPTFYEGLPSYQR 1306
Query: 71 LEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAA 130
LEF+GDA L +A ++F +P DP L+ + A +S + LA +AV GF+K + H ++
Sbjct: 1307 LEFLGDALLDMACVEFLFRRFPGADPQWLTEHKMAMVSNQFLACLAVYLGFHKSIVHCSS 1366
Query: 131 ALDDKVKEFAEAVSQEDNTAVYGGSI-------------------------------KAP 159
+ +V F V E A G + P
Sbjct: 1367 QVQSEVAGFVAEVEGELRAAKEGTEEGEEGEEEEEEKKERGGEEEAFARDFWVRCARRPP 1426
Query: 160 KVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQ-----QQPQPVTLLFKL 214
K LAD+VE+ A++VD +D ++ F + P E+++ + PVT L +
Sbjct: 1427 KCLADVVEAYVGAVFVDSGYDFGEVRRFFADHVRPF--FEDMRPYDAFARKHPVTALAAV 1484
Query: 215 CQKNGKQVDIKHWR 228
Q ++ + WR
Sbjct: 1485 LQ---SKMRCREWR 1495
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 65 STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKF 124
++Y+RLEF+GD L +A + +F P D + + R + L A++ ++
Sbjct: 1103 GSNYERLEFLGDCFLKMATTISIFTLLPDKDESEYHIERMLLVCNRNLFNKALEVKLEEY 1162
Query: 125 VRHSAAALDDKVKEFAEAVS--QEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI----- 177
+R +A D+ + E ++ + V G A K +AD+ E++ A Y+
Sbjct: 1163 IRSTAF---DRRSWYPEGLTLKRGKRRDVDGKHQLADKTIADVCEALIGAAYLTAQDRSP 1219
Query: 178 -DFDL 181
DFDL
Sbjct: 1220 SDFDL 1224
>gi|420494167|ref|ZP_14992736.1| ribonuclease III [Helicobacter pylori Hp P-16]
gi|393110968|gb|EJC11492.1| ribonuclease III [Helicobacter pylori Hp P-16]
Length = 232
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 50/247 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 14 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 73
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D ++ VS + + +
Sbjct: 74 LSKLRASIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEEIS---KGREK 114
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 115 PSILSSAFEALMAGVYLEAGLAKVRKIMQNLLNRAYKRLDLEYLFMDYK------TALQE 168
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 169 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 221
Query: 261 REALEKL 267
AL+KL
Sbjct: 222 YYALQKL 228
>gi|326203626|ref|ZP_08193490.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325986446|gb|EGD47278.1| ribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 236
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 44/247 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYP 92
+ENII +NF NK ++ A+THSSY + +RLEF+GD+ LGL +S Y+F P
Sbjct: 13 LENIIGHNFNNKDIIFAAITHSSYANEKKAKKLKYNERLEFLGDSVLGLVISEYLFQKKP 72
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
L G+LS+ RA + L++ A K++ L K +E +
Sbjct: 73 NLPEGELSVTRAKIVCENSLSQCATDISLGKYL------LLGKGEELS------------ 114
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM------IFRGLLEPIVTLEELQQQPQ 206
GG K +L+D E++ A+Y+D F+ K ++ I R +E + + Q
Sbjct: 115 GGREKIS-LLSDAFEALIGALYIDGGFETAKGFVHKYMDKIIRSCIEGKLFYDYKTQ--- 170
Query: 207 PVTLLFKLCQKNGKQ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L +L Q+NG+Q D N+ + V ++G K+ A+ NAA
Sbjct: 171 ----LQELVQQNGEQQISYSVTDQFGPDHNKTFVTEVKINGVTQGQGKGHSKKEAEQNAA 226
Query: 261 REALEKL 267
++AL L
Sbjct: 227 KDALNNL 233
>gi|315038614|ref|YP_004032182.1| ribonuclease III [Lactobacillus amylovorus GRL 1112]
gi|312276747|gb|ADQ59387.1| ribonuclease III [Lactobacillus amylovorus GRL 1112]
Length = 228
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 27/182 (14%)
Query: 44 NYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
N F N++LLEEA THSSY++ Y++LEF+GDA L LA+SNY++ YP+L+ G
Sbjct: 15 NVKFNNEKLLEEAFTHSSYSNEHPDAGIRDYEKLEFLGDAVLELAVSNYLYRHYPKLNEG 74
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157
+L+ LR+ + TE + A++ GF K + N G+
Sbjct: 75 ELTRLRSNIVRTEGFSEFAIECGFQKEIHLG-------------------NGEEKAGARN 115
Query: 158 APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQK 217
+L D+ E+ A+Y+D + + + P++ E T L +L Q+
Sbjct: 116 RKTLLEDVFEAFNGALYLDQ--GMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQ 173
Query: 218 NG 219
NG
Sbjct: 174 NG 175
>gi|384887681|ref|YP_005762192.1| ribonuclease III [Helicobacter pylori 52]
gi|261839511|gb|ACX99276.1| ribonuclease III [Helicobacter pylori 52]
Length = 239
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA +S HGF K + AL D + S E+ + G K
Sbjct: 81 LSKLRAAIVSA---------HGFTKLAK--IIALQD----YLRVSSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|308184450|ref|YP_003928583.1| ribonuclease III [Helicobacter pylori SJM180]
gi|308060370|gb|ADO02266.1| ribonuclease III [Helicobacter pylori SJM180]
Length = 239
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A +L D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AISLQD----YLHVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|134084339|emb|CAK48679.1| unnamed protein product [Aspergillus niger]
Length = 1531
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 117/267 (43%), Gaps = 40/267 (14%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQL 94
+E ++Y F+ LL A TH SY + + YQRLEF+GD+ + + +F +P
Sbjct: 1236 IEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDR 1295
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV----SQEDNTA 150
DP L+ + A +S + L +AVK G + +++ +A L ++ ++AE + + +
Sbjct: 1296 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGAV 1355
Query: 151 VYGGSIKAP-----------------KVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLE 193
Y K P + L D+VE+ A++VD DF+ + + FR ++
Sbjct: 1356 DYWTVTKDPPKVMTPSALRNTANVDGQCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIK 1415
Query: 194 PI---VTLEELQQQPQPVTLL----------FKLCQKNGKQVDIKHWRKNRKNIASVYVD 240
P + + + P T L C K G+ I +A+V V
Sbjct: 1416 PFFEDMAIYDTFANKHPTTFLHNRLTNEFGCVNYCLKAGEMPSIDG--APAGVLAAVIVH 1473
Query: 241 GSFVASASSEQKEIAKLNAAREALEKL 267
+A ++ AK+ A+ +AL L
Sbjct: 1474 DVVIAEGTATSGRYAKVKASEKALAVL 1500
Score = 38.1 bits (87), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L AV YK++R
Sbjct: 1062 NYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNAAVDKEIYKYIR 1121
>gi|386751066|ref|YP_006224286.1| ribonuclease III [Helicobacter pylori Shi417]
gi|384557324|gb|AFH97792.1| ribonuclease III [Helicobacter pylori Shi417]
Length = 239
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLHVSSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|325957095|ref|YP_004292507.1| ribonuclease III [Lactobacillus acidophilus 30SC]
gi|385817880|ref|YP_005854270.1| ribonuclease III [Lactobacillus amylovorus GRL1118]
gi|325333660|gb|ADZ07568.1| ribonuclease III [Lactobacillus acidophilus 30SC]
gi|327183818|gb|AEA32265.1| ribonuclease III [Lactobacillus amylovorus GRL1118]
Length = 228
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 27/182 (14%)
Query: 44 NYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
N F N++LLEEA THSSY++ Y++LEF+GDA L LA+SNY++ YP+L+ G
Sbjct: 15 NVKFNNEKLLEEAFTHSSYSNEHPDAGIRDYEKLEFLGDAVLELAVSNYLYRHYPKLNEG 74
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157
+L+ LR+ + TE + A++ GF K + N G+
Sbjct: 75 ELTRLRSNIVRTEGFSEFAIECGFQKEIHLG-------------------NGEEKAGARS 115
Query: 158 APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQK 217
+L D+ E+ A+Y+D + + + P++ E T L +L Q+
Sbjct: 116 RKTLLEDVFEAFNGALYLDQ--GMPAVEHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQ 173
Query: 218 NG 219
NG
Sbjct: 174 NG 175
>gi|386752652|ref|YP_006225871.1| ribonuclease III [Helicobacter pylori Shi169]
gi|384558910|gb|AFH99377.1| ribonuclease III [Helicobacter pylori Shi169]
Length = 239
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 123/261 (47%), Gaps = 50/261 (19%)
Query: 28 PSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYV 87
P + + +E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + +
Sbjct: 10 PYATLNSSYATLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELL 69
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
+ + Q D G+LS LRA+ +S HGF K + AL D + S E+
Sbjct: 70 YHKFYQYDEGKLSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE 114
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDID------------------FDLQKLWMIFR 189
+ G K P +L+ E++ A +Y++ DL+ L+M ++
Sbjct: 115 ---ISNGREK-PSILSSAFEALMAGVYLEAGLAKVQKIIQNLLNRAYKRLDLEHLFMDYK 170
Query: 190 GLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASS 249
L+EL Q V ++L ++ G +++ ++Y+ A+A
Sbjct: 171 ------TALQELTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKG 217
Query: 250 EQKEIAKLNAAREALEKLAQS 270
+ K+ A+ A +AL+KL ++
Sbjct: 218 KNKKEAEQQCAYQALQKLKEA 238
>gi|415886541|ref|ZP_11548321.1| ribonuclease III [Bacillus methanolicus MGA3]
gi|387587228|gb|EIJ79551.1| ribonuclease III [Bacillus methanolicus MGA3]
Length = 252
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 121/250 (48%), Gaps = 43/250 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I NF++++LL++A THSSY + +RLEF+GDA L L +S ++F YP +
Sbjct: 26 IGINFEDEKLLKQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTVSQFLFKKYPMMSE 85
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRAA + L A + F + V L K +E G
Sbjct: 86 GELTKLRAAVVCEPSLVSFANELSFGELV------LLGKGEEMT-------------GGR 126
Query: 157 KAPKVLADIVESIAAAIYVD--IDFDLQKLWMI---------FRGLLEPIVTLEELQQQP 205
+ P +LAD+ E+ A+Y+D I+ + L M+ F +++ L+EL Q+
Sbjct: 127 ERPALLADVFEAFIGALYLDKGIETVTKFLEMVVFPKINAGAFSHVMDYKSQLQELVQRD 186
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
T+ +++ Q+ G NR+ ++ V ++ + + + K+ A+ +AA+ ALE
Sbjct: 187 GAGTIEYRILQEKGPA-------HNREFVSLVTLNKVELGTGTGRSKKEAEQHAAQMALE 239
Query: 266 KLAQSMPVNC 275
KL + N
Sbjct: 240 KLKAHLEGNS 249
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K +L EL + Y+I +++GP+H+++F+S V T + V TG +S+ K+AE
Sbjct: 176 KSQLQELVQRDGAGTIEYRILQEKGPAHNREFVSLV---TLNKVELGTGTGRSK-KEAEQ 231
Query: 354 SAASMMLRALR 364
AA M L L+
Sbjct: 232 HAAQMALEKLK 242
>gi|328955642|ref|YP_004372975.1| RNAse III [Coriobacterium glomerans PW2]
gi|328455966|gb|AEB07160.1| RNAse III [Coriobacterium glomerans PW2]
Length = 241
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 117/241 (48%), Gaps = 31/241 (12%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTDS----TSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
E I ++ F +++LL ALTH S + SY+RLEF+GD+ LG ++ +F +YP +D
Sbjct: 11 EQICHHRFADRQLLRCALTHPSAVEGQPVCASYERLEFLGDSILGAIVAVALFNSYPSID 70
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
G+L+ L+ + +S L+ V ++ G + + A+ E T G
Sbjct: 71 EGRLTRLKVSLVSGAMLSDVGLELGIDRCIIFGAS---------------ETGTGARG-- 113
Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLC 215
L ++ ES+ AA+Y+D +D+ + +++ LEP + + + P ++L +
Sbjct: 114 --MHSALENVYESLVAAMYLDGGWDVAEAFILR--TLEPHLADDRPESVSNPKSILQERV 169
Query: 216 QKNG------KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
Q++ K V + A V VDG + K+ A+ +AAR+ALE++
Sbjct: 170 QEDHGEPPCYKLVGMSGPAHEPTFTAVVLVDGVRCGRGTGSSKKEAEASAARDALERMGC 229
Query: 270 S 270
S
Sbjct: 230 S 230
>gi|386754216|ref|YP_006227434.1| ribonuclease III [Helicobacter pylori Shi112]
gi|384560474|gb|AFI00941.1| ribonuclease III [Helicobacter pylori Shi112]
Length = 239
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLHVSSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVQKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|420412236|ref|ZP_14911365.1| ribonuclease III [Helicobacter pylori NQ4228]
gi|393027894|gb|EJB28982.1| ribonuclease III [Helicobacter pylori NQ4228]
Length = 239
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D ++ VS + + +
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEEIS---NGREK 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
AL+KL ++
Sbjct: 229 YYALQKLKEA 238
>gi|297530632|ref|YP_003671907.1| ribonuclease III [Geobacillus sp. C56-T3]
gi|297253884|gb|ADI27330.1| ribonuclease III [Geobacillus sp. C56-T3]
Length = 246
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYPQLDP 96
I F+N++LL +A THSSY + +RLEF+GDA L L +S Y+F +P +
Sbjct: 25 IGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQKFPHMSE 84
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQL+ LRAA + L + A AL F E V + GG
Sbjct: 85 GQLTKLRAAIVCEPSLVKF-------------ANALS-----FGELVLLGKGEELTGGRT 126
Query: 157 KAPKVLADIVESIAAAIYVDIDFD-----LQKLWM------IFRGLLEPIVTLEELQQQP 205
+ P +LAD+ E+ A+Y+D D L+K F +++ L+EL Q+
Sbjct: 127 R-PALLADVFEAFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRD 185
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
TL + + ++ G N++ +A V ++G + K+ A+ +AA+ ALE
Sbjct: 186 GSGTLEYAILEEKGPA-------HNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALE 238
Query: 266 KL 267
L
Sbjct: 239 TL 240
>gi|160892686|ref|ZP_02073476.1| hypothetical protein CLOL250_00216 [Clostridium sp. L2-50]
gi|156865727|gb|EDO59158.1| ribonuclease III [Clostridium sp. L2-50]
Length = 230
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 115/242 (47%), Gaps = 44/242 (18%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLALSNYVFLAYP 92
+E+II Y F++ LL ALTH SY + SY+R EF+GDA L +S Y++ YP
Sbjct: 9 IEDIIGYTFRDLDLLVTALTHKSYANERKINKVESYERSEFLGDAILEFVVSEYLYQNYP 68
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ G+L+ LRA+ + L++++ + F +V S ED T
Sbjct: 69 EYPEGKLTKLRASLVCEFTLSQISKELKFGHYVLLSKG---------------EDLT--- 110
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI----------VTLEELQ 202
G ++ D+ E++ AIY+D D K + + R LL+ + TL+EL
Sbjct: 111 -GGRNRNSIMCDLFEAVLGAIYLDGGLDEAKKF-VHRFLLDDVETHSLFYDAKSTLQELA 168
Query: 203 QQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262
Q+ + TL + L ++ G N+ ++ V ++G VA+ ++ ++ AA
Sbjct: 169 QKEEK-TLTYALLEEKGPD-------HNKSYVSEVCINGEHVATGEGASRKASEQTAAYN 220
Query: 263 AL 264
AL
Sbjct: 221 AL 222
>gi|126698844|ref|YP_001087741.1| ribonuclease III [Clostridium difficile 630]
gi|254974792|ref|ZP_05271264.1| ribonuclease III [Clostridium difficile QCD-66c26]
gi|255092180|ref|ZP_05321658.1| ribonuclease III [Clostridium difficile CIP 107932]
gi|255100264|ref|ZP_05329241.1| ribonuclease III [Clostridium difficile QCD-63q42]
gi|255306204|ref|ZP_05350376.1| ribonuclease III [Clostridium difficile ATCC 43255]
gi|255313919|ref|ZP_05355502.1| ribonuclease III [Clostridium difficile QCD-76w55]
gi|255516598|ref|ZP_05384274.1| ribonuclease III [Clostridium difficile QCD-97b34]
gi|255649698|ref|ZP_05396600.1| ribonuclease III [Clostridium difficile QCD-37x79]
gi|260682854|ref|YP_003214139.1| ribonuclease III [Clostridium difficile CD196]
gi|260686452|ref|YP_003217585.1| ribonuclease III [Clostridium difficile R20291]
gi|306519814|ref|ZP_07406161.1| ribonuclease III [Clostridium difficile QCD-32g58]
gi|384360443|ref|YP_006198295.1| ribonuclease III [Clostridium difficile BI1]
gi|423082364|ref|ZP_17070956.1| ribonuclease III [Clostridium difficile 002-P50-2011]
gi|423087756|ref|ZP_17076142.1| ribonuclease III [Clostridium difficile 050-P50-2011]
gi|423090834|ref|ZP_17079120.1| ribonuclease III [Clostridium difficile 70-100-2010]
gi|115250281|emb|CAJ68103.1| ribonuclease III [Clostridium difficile 630]
gi|260209017|emb|CBA62108.1| putative ribonuclease III [Clostridium difficile CD196]
gi|260212468|emb|CBE03371.1| putative ribonuclease III [Clostridium difficile R20291]
gi|357544070|gb|EHJ26076.1| ribonuclease III [Clostridium difficile 050-P50-2011]
gi|357548690|gb|EHJ30550.1| ribonuclease III [Clostridium difficile 002-P50-2011]
gi|357555949|gb|EHJ37571.1| ribonuclease III [Clostridium difficile 70-100-2010]
Length = 236
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 119/258 (46%), Gaps = 50/258 (19%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALS 84
S ++ D + EN+INY FKNK + EALTHSSY++ +RLEF+GD+ LG+ +S
Sbjct: 4 SKKLLDNIQRFENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIVIS 63
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEA 142
+Y+F L G+L+ LRA + + L+ VA + G + + A
Sbjct: 64 DYLFNEEANLPEGELTKLRANIVCEDSLSEVANDINLGIHMLLGRGEEAT---------- 113
Query: 143 VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV------ 196
G +LAD E++ AAIY+D F+ + +++ +E I+
Sbjct: 114 -----------GGRHRTSILADAFEAVIAAIYLDGGFESARQFILHH--MENIIYDSRKG 160
Query: 197 --------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASAS 248
L+E+ Q + ++L ++ G N++ + V ++ +
Sbjct: 161 NIFRDYKTHLQEVLQGNGENNIWYRLIEEKGPD-------HNKRFVMEVGINDDVLGIGE 213
Query: 249 SEQKEIAKLNAAREALEK 266
+ K+ A+ AA+ AL+K
Sbjct: 214 GKSKKEAEQLAAKIALKK 231
>gi|116748321|ref|YP_845008.1| ribonuclease III [Syntrophobacter fumaroxidans MPOB]
gi|189043370|sp|A0LGM1.1|RNC_SYNFM RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116697385|gb|ABK16573.1| RNAse III [Syntrophobacter fumaroxidans MPOB]
Length = 242
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 130/257 (50%), Gaps = 48/257 (18%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYT------DSTSYQRLEFIGDAALGLALSNYV 87
D + ++N++ Y F ++ LL AL H SY D + LEF+GDA LGLA+S+++
Sbjct: 5 DGLEALQNLLGYRFGDEGLLHRALVHRSYLHENPHLDEKDNETLEFLGDAVLGLAISHFL 64
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
+P + G+LS LR+A ++ +L R+AV+ +++ L K +E
Sbjct: 65 LEQFPDYNEGELSRLRSAIVNERELTRIAVELNLGEYL------LLGKGEEMT------- 111
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWMIF------RGLLEPI- 195
GG KA +LAD +E++ A+IY+D D ++KL+ ++ +L+ +
Sbjct: 112 -----GGRRKAS-LLADSLEALLASIYLDGGLDAVLGVIKKLFDVYLRFEKREHVLKALD 165
Query: 196 ----VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQ 251
L+EL Q +T ++ L ++ G D K + N V ++G +A S +
Sbjct: 166 KDYKTQLQELTQARYKLTPVYVLDREEGPDHD-KTFHMN------VVLEGQVLAGGSGKS 218
Query: 252 KEIAKLNAAREALEKLA 268
K+ A+ AA +AL+ +A
Sbjct: 219 KKDAQQAAAEKALQIIA 235
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K +L EL + P Y ++++EGP HDK F V + +G + G KS+ KDA+
Sbjct: 169 KTQLQELTQARYKLTPVYVLDREEGPDHDKTFHMNVVL---EGQVLAGGSGKSK-KDAQQ 224
Query: 354 SAASMMLR 361
+AA L+
Sbjct: 225 AAAEKALQ 232
>gi|313665378|ref|YP_004047249.1| ribonuclease III [Mycoplasma leachii PG50]
gi|312949374|gb|ADR23970.1| ribonuclease III [Mycoplasma leachii PG50]
Length = 232
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 120/248 (48%), Gaps = 46/248 (18%)
Query: 45 YNFK--NKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
YN K ++++ +EALTH+SY + SYQRLEF+GDA L + S ++F Y +L G+
Sbjct: 10 YNIKINDQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYTSKFLFFNYSKLGEGE 69
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
L+ LRA+ + E L+R+A + +R + L K E
Sbjct: 70 LTRLRASIVREESLSRIARDINLGQLIRLGHSELMTKGYE-------------------K 110
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWM---IFRGLLEP--IVTLEELQQQPQPVTLLFK 213
+LADI E++ AAIY+D + +W+ +F+ + +P I ++ + + Q +
Sbjct: 111 QSILADIFEALTAAIYLDQSEEGLLIWLEQTLFKYMKDPTFINVTKDFKSELQELL---- 166
Query: 214 LCQKNGKQVDIKHWRKNRKNIA---------SVYVDGSFVASASSEQKEIAKLNAAREAL 264
++ K+ D+K+ +N + A S+ +DG K+ A+ NAA + L
Sbjct: 167 ---QSEKRSDLKYITENEEFFANENKTLYTVSINLDGQKFGVGKGYSKQEAEQNAASDCL 223
Query: 265 EKLAQSMP 272
KL + +
Sbjct: 224 SKLKKPLS 231
>gi|392388813|ref|YP_005907222.1| ribonuclease=3 [Mycoplasma leachii 99/014/6]
gi|339276458|emb|CBV67037.1| Ribonuclease=3 [Mycoplasma leachii 99/014/6]
Length = 232
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 119/248 (47%), Gaps = 46/248 (18%)
Query: 45 YNFK--NKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
YN K ++++ +EALTH+SY + SYQRLEF+GDA L + S ++F Y +L G+
Sbjct: 10 YNIKINDQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYTSKFLFFNYSKLGEGE 69
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
L+ LRA+ + E L+R+A + +R L K E
Sbjct: 70 LTRLRASIVREESLSRIARDINLGQLIRLGHGELMTKGYE-------------------K 110
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWM---IFRGLLEP--IVTLEELQQQPQPVTLLFK 213
+LADI E++ AAIY+D + +W+ +F+ + +P I ++ + + Q +
Sbjct: 111 QSILADIFEALTAAIYLDQSEEGLLIWLEQTLFKYMKDPTFINVTKDFKSELQELL---- 166
Query: 214 LCQKNGKQVDIKHWRKNRKNIA---------SVYVDGSFVASASSEQKEIAKLNAAREAL 264
++ K+ D+K+ +N + A S+ +DG K+ A+ NAA + L
Sbjct: 167 ---QSEKRSDLKYITENEEFFANENKTLYTVSINLDGQKFGVGKGYSKQEAEQNAASDCL 223
Query: 265 EKLAQSMP 272
KL + +
Sbjct: 224 SKLKKPLS 231
>gi|384892695|ref|YP_005766788.1| ribonuclease III [Helicobacter pylori Cuz20]
gi|308061992|gb|ADO03880.1| ribonuclease III [Helicobacter pylori Cuz20]
Length = 239
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|323340721|ref|ZP_08080973.1| ribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|417974281|ref|ZP_12615102.1| ribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|323091844|gb|EFZ34464.1| ribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|346329278|gb|EGX97576.1| ribonuclease III [Lactobacillus ruminis ATCC 25644]
Length = 230
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 109/239 (45%), Gaps = 47/239 (19%)
Query: 46 NFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQL 99
N KN L +EA TH+SY + Y+R+EF+GDA + L +S Y+F YP L G+L
Sbjct: 16 NVKNTDLFDEAFTHASYVNEHPKEHLKYYERIEFLGDAVMQLCVSEYLFKRYPSLPEGKL 75
Query: 100 SLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAP 159
S LRAA + + ++ A + F +++R K +E A+A ++
Sbjct: 76 SRLRAAMVCEDSFSKFAKECHFDEYIRLG------KGEEKADARNR-------------S 116
Query: 160 KVLADIVESIAAAIYVD------IDF-------DLQKLWMIFRGLLEPIVTLEELQQQPQ 206
+L DI ES A+Y+D ++F L W F LL+ L+E QQ
Sbjct: 117 SLLCDIFESFIGALYLDQGKDKVVEFISAVVFPKLDMGW--FDHLLDHKTELQEYLQQNG 174
Query: 207 PVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+ +K+ + G D + +VY DG + K+ A+ AA +AL+
Sbjct: 175 DCKIEYKMLDEKGPDND-------KTYTMAVYADGKKIGEGVGSSKKNAEQAAAYQALK 226
>gi|73748788|ref|YP_308027.1| ribonuclease III [Dehalococcoides sp. CBDB1]
gi|90101624|sp|Q3ZXY9.1|RNC_DEHSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|73660504|emb|CAI83111.1| ribonuclease III [Dehalococcoides sp. CBDB1]
Length = 237
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 118/251 (47%), Gaps = 44/251 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYP 92
+EN + F+ LLE+AL H+S+ + S S +R+EF+GDA LG+ ++ ++ +P
Sbjct: 7 LENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRLYHDFP 66
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ G L+ R+ + E L RVA+ K++ E VS+
Sbjct: 67 DIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGR----------GEDVSK------- 109
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQK--LWMIFRGLLEPIVT----------LEE 200
G K P LA E++ AAIY+D D+ + ++ +F+ +E + T L+E
Sbjct: 110 -GRFK-PANLAGAFEAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQE 167
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q +T +++ +G + NR IA VY + A S K+ A+ NAA
Sbjct: 168 LIQAQLQLTPRYRITNFSGPE-------HNRLFIAEVYAEDRVFAEGSGRSKKEAETNAA 220
Query: 261 REALEKLAQSM 271
+ AL++ S
Sbjct: 221 KVALQQFENSF 231
>gi|420396496|ref|ZP_14895715.1| ribonuclease III [Helicobacter pylori CPY1313]
gi|393013354|gb|EJB14530.1| ribonuclease III [Helicobacter pylori CPY1313]
Length = 239
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 124/261 (47%), Gaps = 50/261 (19%)
Query: 28 PSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYV 87
P + + +E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + +
Sbjct: 10 PYATLNSSYATLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELL 69
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
+ + Q D G+LS LRA+ +S HGF K + AL D ++ VS +
Sbjct: 70 YHKFYQYDEGKLSKLRASIVSA---------HGFTKLAK--VIALQDYLR-----VSSSE 113
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDID------------------FDLQKLWMIFR 189
+ G K P +L+ E++ A +Y++ DL+ L+M ++
Sbjct: 114 E--ISKGREK-PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK 170
Query: 190 GLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASS 249
L+EL Q V ++L ++ G +++ ++Y+ A+A
Sbjct: 171 ------TALQELTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKG 217
Query: 250 EQKEIAKLNAAREALEKLAQS 270
+ K+ A+ A +AL+KL ++
Sbjct: 218 KSKKEAEQQCAYQALQKLKEA 238
>gi|256851300|ref|ZP_05556689.1| ribonuclease III [Lactobacillus jensenii 27-2-CHN]
gi|260660724|ref|ZP_05861639.1| ribonuclease III [Lactobacillus jensenii 115-3-CHN]
gi|297206169|ref|ZP_06923564.1| ribonuclease III [Lactobacillus jensenii JV-V16]
gi|256616362|gb|EEU21550.1| ribonuclease III [Lactobacillus jensenii 27-2-CHN]
gi|260548446|gb|EEX24421.1| ribonuclease III [Lactobacillus jensenii 115-3-CHN]
gi|297149295|gb|EFH29593.1| ribonuclease III [Lactobacillus jensenii JV-V16]
Length = 230
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 115/232 (49%), Gaps = 35/232 (15%)
Query: 47 FKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
FKN+ LLEEA THSSY + + +Y++LEF+GDA L LA+S+Y++ +P L+ GQL+
Sbjct: 18 FKNETLLEEAFTHSSYVNEHPKESAGNYEKLEFLGDAVLELAVSDYLYRHFPSLNEGQLT 77
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
LR+ + TE + A++ GF + E+ T G+ +
Sbjct: 78 RLRSNIVRTEGFSGFAIECGFPAEINLGRG---------------EEKT----GARERKT 118
Query: 161 VLADIVESIAAAIYVDIDFD-LQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNG 219
+L D+ E+ A+++D D +QK + + P++ E T L +L Q NG
Sbjct: 119 LLEDVFEAFNGALFLDQGMDAVQKFLKL---TVYPLIDSGEFTDSRDYKTDLQELLQVNG 175
Query: 220 KQVDIKHWRKNRKNIAS-----VYVDGSFVASASSEQKEIAKLNAAREALEK 266
+ I++ + S ++V+G ++ S K+ A+ AA+ AL K
Sbjct: 176 -AIKIEYQVLEETKLPSNFKVALFVEGKKISEGSGHNKKAAEQVAAKLALIK 226
>gi|308182848|ref|YP_003926975.1| ribonuclease III [Helicobacter pylori PeCan4]
gi|308065033|gb|ADO06925.1| ribonuclease III [Helicobacter pylori PeCan4]
Length = 239
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 122/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S + GF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSAQ---------GFTKLAK--AIALQD----YLRVSSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V +++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPIYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|420404397|ref|ZP_14903580.1| ribonuclease III [Helicobacter pylori CPY6261]
gi|393018276|gb|EJB19427.1| ribonuclease III [Helicobacter pylori CPY6261]
Length = 238
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 20 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 79
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 80 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE---ISSGREK- 120
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 121 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 174
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 175 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 227
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 228 YQALQKLKEA 237
>gi|420400256|ref|ZP_14899457.1| ribonuclease III [Helicobacter pylori CPY3281]
gi|393017201|gb|EJB18354.1| ribonuclease III [Helicobacter pylori CPY3281]
Length = 238
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 127/264 (48%), Gaps = 51/264 (19%)
Query: 26 SLPSPEMEDAVFY-VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALS 84
S SP + ++ + +E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL +
Sbjct: 6 SQNSPYVTNSSYVTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIG 65
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS 144
++ + Q D G+LS LRA+ +S HGF K + AL D + S
Sbjct: 66 ELLYHKFYQYDEGKLSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSS 110
Query: 145 QEDNTAVYGGSIKAPKVLADIVESIAAAIYVDID------------------FDLQKLWM 186
E+ + G K P +L+ E++ A +Y++ DL+ L+M
Sbjct: 111 SEE---ISNGREK-PSILSSAFEALMAGVYLEAGLAKVRKVIQNLLNRAYKRLDLEHLFM 166
Query: 187 IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVAS 246
++ L+EL Q V ++L ++ G +++ ++Y+ A+
Sbjct: 167 DYK------TALQELTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYAT 213
Query: 247 ASSEQKEIAKLNAAREALEKLAQS 270
A + K+ A+ A +AL+KL ++
Sbjct: 214 AKGKSKKEAEQQCAYQALQKLKEA 237
>gi|261419391|ref|YP_003253073.1| ribonuclease III [Geobacillus sp. Y412MC61]
gi|319766206|ref|YP_004131707.1| ribonuclease III [Geobacillus sp. Y412MC52]
gi|448237348|ref|YP_007401406.1| ribonuclease 3 [Geobacillus sp. GHH01]
gi|261375848|gb|ACX78591.1| ribonuclease III [Geobacillus sp. Y412MC61]
gi|317111072|gb|ADU93564.1| ribonuclease III [Geobacillus sp. Y412MC52]
gi|445206190|gb|AGE21655.1| ribonuclease 3 [Geobacillus sp. GHH01]
Length = 246
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYPQLDP 96
I F+N++LL +A THSSY + +RLEF+GDA L L +S Y+F +P +
Sbjct: 25 IGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQKFPHMSE 84
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQL+ LRAA + L + A AL F E V + GG
Sbjct: 85 GQLTKLRAAIVCEPSLVKF-------------ANALS-----FGELVLLGKGEELTGGRT 126
Query: 157 KAPKVLADIVESIAAAIYVDIDFD-----LQKLWM------IFRGLLEPIVTLEELQQQP 205
+ P +LAD+ E+ A+Y+D D L+K F +++ L+EL Q+
Sbjct: 127 R-PALLADVFEAFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQELVQRD 185
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
TL + + ++ G N++ +A V ++G + K+ A+ +AA+ ALE
Sbjct: 186 GSGTLEYAILEEKGPA-------HNKEFVARVALNGQELGIGVGRSKKEAEQHAAQMALE 238
Query: 266 KL 267
L
Sbjct: 239 TL 240
>gi|385249180|ref|YP_005777399.1| ribonuclease III [Helicobacter pylori F57]
gi|317181975|dbj|BAJ59759.1| ribonuclease III [Helicobacter pylori F57]
Length = 238
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 20 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 79
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 80 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE---ISNGREK- 120
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 121 PSILSSAFEALMAGVYLEAGLAKVRKITQNLLNRTYKRLDLEHLFMDYK------TALQE 174
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 175 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 227
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 228 YQALQKLKEA 237
>gi|85712960|ref|ZP_01043999.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina baltica OS145]
gi|85693198|gb|EAQ31157.1| Rnase III, dsRNA-specific ribonuclease [Idiomarina baltica OS145]
Length = 228
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 116/251 (46%), Gaps = 36/251 (14%)
Query: 26 SLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSN 85
SLP P + +E II Y F+ + LL++ALTH S + +RLEF+GD+ LG+ ++
Sbjct: 2 SLPKPPLTQ----LEQIIGYRFERQSLLKQALTHRS-AHANHNERLEFLGDSILGVVIAE 56
Query: 86 YVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ 145
+F +P++ G LS +RAA + LAR+ K G ++ L
Sbjct: 57 ALFSRFPKVAEGDLSRMRAAIVCGRSLARLGKKKGLGDYLSLGQGELKS----------- 105
Query: 146 EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQP 205
G + +LAD +E+I AI++D D D K ++ E + T++ Q
Sbjct: 106 --------GGYRRESILADAMEAIIGAIFLDSDMDTVK-QVVLGWFEEQLETIKPGASQK 156
Query: 206 QPVTLLFKLCQKNGKQ------VDIKHWRKNRKNIASVYVDG---SFVASASSEQKEIAK 256
P T L + Q + V + N++ + ++G + + +S +K A+
Sbjct: 157 DPKTRLQEWLQARQRPLPEYDVVATQGQAHNQQFTVTCTIEGLPEPLLGTGTSRRK--AE 214
Query: 257 LNAAREALEKL 267
AA ALE+L
Sbjct: 215 QAAATSALEQL 225
>gi|147669550|ref|YP_001214368.1| ribonuclease III [Dehalococcoides sp. BAV1]
gi|289432809|ref|YP_003462682.1| ribonuclease III [Dehalococcoides sp. GT]
gi|452203773|ref|YP_007483906.1| ribonuclease III [Dehalococcoides mccartyi DCMB5]
gi|146270498|gb|ABQ17490.1| RNAse III [Dehalococcoides sp. BAV1]
gi|288946529|gb|ADC74226.1| ribonuclease III [Dehalococcoides sp. GT]
gi|452110832|gb|AGG06564.1| ribonuclease III [Dehalococcoides mccartyi DCMB5]
Length = 248
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 118/251 (47%), Gaps = 44/251 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYP 92
+EN + F+ LLE+AL H+S+ + S S +R+EF+GDA LG+ ++ ++ +P
Sbjct: 18 LENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRLYHDFP 77
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ G L+ R+ + E L RVA+ K++ E VS+
Sbjct: 78 DIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGR----------GEDVSK------- 120
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQK--LWMIFRGLLEPIVT----------LEE 200
G K P LA E++ AAIY+D D+ + ++ +F+ +E + T L+E
Sbjct: 121 -GRFK-PANLAGAFEAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQE 178
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q +T +++ +G + NR IA VY + A S K+ A+ NAA
Sbjct: 179 LIQAQLQLTPRYRITNFSGPE-------HNRLFIAEVYAEDRVFAEGSGRSKKEAETNAA 231
Query: 261 REALEKLAQSM 271
+ AL++ S
Sbjct: 232 KVALQQFENSF 242
>gi|420404699|ref|ZP_14903879.1| ribonuclease III [Helicobacter pylori CPY6271]
gi|393024569|gb|EJB25679.1| ribonuclease III [Helicobacter pylori CPY6271]
Length = 239
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|420398911|ref|ZP_14898122.1| ribonuclease III [Helicobacter pylori CPY1962]
gi|393013140|gb|EJB14317.1| ribonuclease III [Helicobacter pylori CPY1962]
Length = 238
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 20 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 79
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 80 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE---ISNGREK- 120
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 121 PSILSSAFEALMAGVYLEAGLAKVHKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 174
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 175 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 227
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 228 YQALQKLKEA 237
>gi|451823164|ref|YP_007459438.1| ribonuclease III [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
gi|451775964|gb|AGF47005.1| ribonuclease III [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
Length = 230
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 83/149 (55%), Gaps = 20/149 (13%)
Query: 35 AVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQL 94
+ F +EN + Y+F N LLE ALTH SY+ + +RLEF+GD+ L +++ +F + +
Sbjct: 2 SFFKLENSLKYSFNNISLLELALTHRSYS-ANHNERLEFLGDSILNSSITIILFERFSHI 60
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
D G LS LRA+ + LA++A+K +++R D ++K GG
Sbjct: 61 DEGGLSRLRASLVQQNSLAKIAIKLDISRYLRLG----DGEIKS--------------GG 102
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFDLQK 183
S + P +LAD +E+I AI+ D FD+ K
Sbjct: 103 SNR-PSILADCIEAIFGAIFQDSGFDVCK 130
>gi|217033708|ref|ZP_03439135.1| hypothetical protein HP9810_5g50 [Helicobacter pylori 98-10]
gi|216943897|gb|EEC23334.1| hypothetical protein HP9810_5g50 [Helicobacter pylori 98-10]
Length = 238
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 20 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 79
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 80 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE---ISNGREK- 120
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 121 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 174
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 175 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 227
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 228 YQALQKLKEA 237
>gi|387908031|ref|YP_006338365.1| ribonuclease III [Helicobacter pylori XZ274]
gi|387572966|gb|AFJ81674.1| ribonuclease III [Helicobacter pylori XZ274]
Length = 239
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATARGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|386746174|ref|YP_006219391.1| ribonuclease III [Helicobacter pylori HUP-B14]
gi|384552423|gb|AFI07371.1| ribonuclease III [Helicobacter pylori HUP-B14]
Length = 239
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A +L D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AISLQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V +++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPIYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
AL+KL ++
Sbjct: 229 YYALQKLKEA 238
>gi|187778952|ref|ZP_02995425.1| hypothetical protein CLOSPO_02547 [Clostridium sporogenes ATCC
15579]
gi|187772577|gb|EDU36379.1| ribonuclease III [Clostridium sporogenes ATCC 15579]
Length = 237
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 46/242 (19%)
Query: 47 FKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
FK+++LL+ ALTHSSY + Y+RLEF+GD+ L L +S +++ Y G+L+
Sbjct: 22 FKDEKLLDVALTHSSYANGKKNIKYYERLEFLGDSVLQLIISEHLYQKYEDKKEGELTRK 81
Query: 103 RAANISTEKLARVAVKH--GFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
RA + L +A + GFY + + GG +
Sbjct: 82 RAIIVCENSLYEMAKRWDLGFY--------------------LQMSKGEELTGGRERVS- 120
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIV----------TLEELQQQPQPV 208
+LAD VESI AAIY+D D + +++ F+ ++E + TL+E+ QQ +
Sbjct: 121 ILADCVESIIAAIYLDKGLDEAREFVMKNFKEIIEKAMRDEIILDYKTTLQEIVQQNNDL 180
Query: 209 TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268
T+ ++L ++ G RK +V +D + K+ A+ NAA+EAL+ L
Sbjct: 181 TINYELLKQEGPP-------HRRKFFTNVTIDNEVRGTGIGYSKKEAEQNAAKEALKNLG 233
Query: 269 QS 270
+
Sbjct: 234 DN 235
>gi|260663569|ref|ZP_05864459.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN]
gi|260552110|gb|EEX25163.1| ribonuclease III [Lactobacillus fermentum 28-3-CHN]
Length = 232
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 47/249 (18%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAY 91
Y+ +F N LL EA T +SY + Y+R+EF+GDA L L +S Y++ Y
Sbjct: 8 YLAKTYGIHFNNPALLAEAFTQASYVNEHPHENLKYYERIEFLGDAVLQLFVSEYIYRRY 67
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV 151
P+L G+L+ LRAA + + ++ A + F +++R K +E A
Sbjct: 68 PELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLG------KGEEMA----------- 110
Query: 152 YGGSIKAPKVLADIVESIAAAIYVD-----IDFDLQKL--------WMIFRGLLEPIVTL 198
G+ +L DI ES A+Y+D ++ +Q + W F ++ +L
Sbjct: 111 --GARNRASLLCDIFESFIGALYLDQGRQAVEQFIQTVIFPKLDLGW--FDHAVDAKTSL 166
Query: 199 EELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLN 258
+E Q+ V + + L + G + D V VDG VA+ K+ A+++
Sbjct: 167 QEFLQRNGDVAIEYDLLSEGGTENDPVFE-------VEVTVDGKKVATGQGSSKKHAEMD 219
Query: 259 AAREALEKL 267
AA+ ALEKL
Sbjct: 220 AAKHALEKL 228
>gi|430848263|ref|ZP_19466089.1| ribonuclease 3 [Enterococcus faecium E1133]
gi|430535606|gb|ELA76006.1| ribonuclease 3 [Enterococcus faecium E1133]
Length = 228
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 45/232 (19%)
Query: 44 NYN--FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
NYN F + LLE+A THSSY + + +RLEF+GDA L L +S Y+F YP L
Sbjct: 12 NYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYPHLP 71
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
G+L+ RAA + + L++ A + F ++V E+N+ GG
Sbjct: 72 EGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKG---------------EENS---GGR 113
Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQ 204
+ P +L D+ E+ A+Y+D FD ++ F ++ L+E+ Q+
Sbjct: 114 TR-PALLCDLFEAFLGALYLDQGFDTTHAFIEKVIFPKVKAGAFSHEMDHKTKLQEVLQK 172
Query: 205 PQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK 256
V++ ++L + G + W VYVD + + + K++A+
Sbjct: 173 SGDVSIEYRLINEEGPAHERVFW-------IEVYVDDQLIGTGQGKSKKLAE 217
>gi|312897519|ref|ZP_07756939.1| ribonuclease III [Megasphaera micronuciformis F0359]
gi|310621371|gb|EFQ04911.1| ribonuclease III [Megasphaera micronuciformis F0359]
Length = 238
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 36/235 (15%)
Query: 47 FKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
F + LL++ALTHSSYT+ S +RLEF+GDA L + + Y++ YP + G L+
Sbjct: 21 FTDWHLLDQALTHSSYTNEDKTHHSMHNERLEFLGDAVLDMVVGEYLYRRYPDMPEGNLT 80
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
RA+ +S E LA V GF+ + + A+ GG +
Sbjct: 81 KARASIVSEEPLACVCA--GFH----------------MGDYLRLGKGEALTGGRTR-NS 121
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK-LCQKNG 219
++AD E++ AIY+D + + +++ + LE + L E + F+ L Q++G
Sbjct: 122 IMADAFEAVVGAIYMDCSYSAARDFILTQ--LERYLQLVEKGIYGKDYKTYFQELLQRDG 179
Query: 220 KQVDIKHW-------RKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
Q DIK+ N+ V V+G+ + S + K+ A+ +AA ALEK+
Sbjct: 180 AQ-DIKYHLCHEEGPDHNKTFFMEVIVNGTTMGMGSGKTKKSAEQHAAYAALEKM 233
>gi|385229953|ref|YP_005789869.1| ribonuclease III [Helicobacter pylori Puno135]
gi|344336391|gb|AEN18352.1| ribonuclease III [Helicobacter pylori Puno135]
Length = 238
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 126/261 (48%), Gaps = 51/261 (19%)
Query: 29 SPEMEDAVF-YVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYV 87
SP + ++ + +E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + +
Sbjct: 9 SPYITNSSYATLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELL 68
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
+ + Q D G+LS LRA+ +S HGF K + AL D + S E+
Sbjct: 69 YHKFYQYDEGKLSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE 113
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDID------------------FDLQKLWMIFR 189
+ G K P +L+ E++ A +Y++ DL+ L+M ++
Sbjct: 114 ---ISNGREK-PSILSSAFEALMAGVYLEAGLAKVQKIIQNLLNRAYKRLDLEHLFMDYK 169
Query: 190 GLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASS 249
L+EL Q V ++L ++ G +++ ++Y+ A+A
Sbjct: 170 ------TALQELTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKG 216
Query: 250 EQKEIAKLNAAREALEKLAQS 270
+ K+ A+ A +AL+KL ++
Sbjct: 217 KSKKEAEQQCAYQALQKLKEA 237
>gi|118474451|ref|YP_892860.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40]
gi|261885507|ref|ZP_06009546.1| ribonuclease III [Campylobacter fetus subsp. venerealis str.
Azul-94]
gi|189043299|sp|A0RRM7.1|RNC_CAMFF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|118413677|gb|ABK82097.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40]
Length = 223
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 97/200 (48%), Gaps = 35/200 (17%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQ 93
D + +E + Y FKNK LL+EALTH S S + +RLEF+GDA L L + Y+F +
Sbjct: 2 DKLNRLEEHLGYKFKNKTLLKEALTHKSMKSSVNNERLEFLGDAVLDLIVGEYLFFKFKD 61
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
D G LS LRAA ++ + A ++ + F+ SAA EDN
Sbjct: 62 TDEGNLSKLRAALVNEKSFASISSQIRLGDFLYLSAA---------------EDNN---N 103
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP--------------IVTLE 199
G K P +++D +E++ AIY ++ L+ + IF LLE TL+
Sbjct: 104 GRNK-PSLVSDALEALMGAIY--LESGLEAVKKIFINLLESQYNNIDLQSLGKDYKTTLQ 160
Query: 200 ELQQQPQPVTLLFKLCQKNG 219
E+ Q VT ++L +G
Sbjct: 161 EITQARFGVTPRYELVSSSG 180
>gi|138894713|ref|YP_001125166.1| ribonuclease III [Geobacillus thermodenitrificans NG80-2]
gi|196247668|ref|ZP_03146370.1| Ribonuclease III [Geobacillus sp. G11MC16]
gi|189043318|sp|A4IM67.1|RNC_GEOTN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|134266226|gb|ABO66421.1| Ribonuclease III [Geobacillus thermodenitrificans NG80-2]
gi|196212452|gb|EDY07209.1| Ribonuclease III [Geobacillus sp. G11MC16]
Length = 246
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYPQLDP 96
I F+N++LL +A THSSY + +RLEF+GDA L L +S Y+F +P +
Sbjct: 25 IGITFQNEKLLIQAFTHSSYVNEHRRRFHEDNERLEFLGDAVLELTVSQYLFQKFPHMSE 84
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQL+ LRAA + L + A AL F E V + GG
Sbjct: 85 GQLTKLRAAIVCEPSLVKF-------------ANALS-----FGELVLLGKGEELTGGRT 126
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQP 205
+ P +LAD+ E+ A+Y+D D+ ++ F +++ L+EL Q+
Sbjct: 127 R-PALLADVFEAFIGALYLDQGMDVVLRFLGQTMFPKIDEGAFSHVMDFKSQLQELVQRD 185
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
TL + + ++ G N++ +A V ++G + K+ A+ +AA+ ALE
Sbjct: 186 GSGTLEYAILEEKGPA-------HNKEFVARVALNGQELGVGVGRSKKEAEQHAAQMALE 238
Query: 266 KL 267
L
Sbjct: 239 TL 240
>gi|312869965|ref|ZP_07730104.1| ribonuclease III [Lactobacillus oris PB013-T2-3]
gi|417886270|ref|ZP_12530417.1| ribonuclease III [Lactobacillus oris F0423]
gi|311094550|gb|EFQ52855.1| ribonuclease III [Lactobacillus oris PB013-T2-3]
gi|341593768|gb|EGS36593.1| ribonuclease III [Lactobacillus oris F0423]
Length = 232
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 118/256 (46%), Gaps = 50/256 (19%)
Query: 31 EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALS 84
E++D Y+ + +F + RLL EA T +SY + Y+R+EF+GDA L L +S
Sbjct: 4 ELQD---YLAKEFDIHFSDPRLLAEAFTQASYVNEHPHQNLKFYERIEFLGDAVLELIVS 60
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS 144
Y++ YP+L G+L+ LRAA + + ++ A + F +++R +E A
Sbjct: 61 EYIYKRYPELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHG------EELA---- 110
Query: 145 QEDNTAVYGGSIKAPKVLADIVESIAAAIYVD-------------IDFDLQKLWMIFRGL 191
G+ + P +L DI ES A+Y+D I L W F
Sbjct: 111 ---------GARQRPGLLCDIFESFVGALYLDQGRPAVEKFVRRVIFPKLDMGW--FDHA 159
Query: 192 LEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQ 251
++ +L+E Q+ V + + L +++G + N V +G +A
Sbjct: 160 VDAKTSLQEFLQRDGDVLIEYHLLEESGTE-------NNPAFHVDVAANGQVIADGQGSS 212
Query: 252 KEIAKLNAAREALEKL 267
K+ A++ AA+ AL+KL
Sbjct: 213 KKQAEMQAAQRALKKL 228
>gi|385217430|ref|YP_005778906.1| ribonuclease III [Helicobacter pylori F16]
gi|317177479|dbj|BAJ55268.1| ribonuclease III [Helicobacter pylori F16]
Length = 239
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKITQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|169610828|ref|XP_001798832.1| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15]
gi|160702165|gb|EAT83689.2| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15]
Length = 1443
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 106/245 (43%), Gaps = 40/245 (16%)
Query: 45 YNFKNKRLLEEALTHSS----YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
Y F+ RLL A H S + + SYQRLEF+GD+ L +A ++F YP DP L+
Sbjct: 1171 YRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYPDKDPQWLT 1230
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI-KAP 159
+ +S + L V ++ D V E EA + + Y S+ + P
Sbjct: 1231 EHKTPMVSNKFLGAVQIR---------------DYVYEVEEAEREANGAVDYWVSVSEPP 1275
Query: 160 KVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQ--QPQPVTLLFKL 214
K LAD++E+ AAI+VD +FD + F L+P +TL+ + P T L +L
Sbjct: 1276 KCLADVIEAFVAAIFVDSEFDFNVVQKFFDLHLKPFFLDMTLDAYENFASNHPTTRLSRL 1335
Query: 215 CQKNGKQVDIKHWR------------KNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262
N WR K + A V + + + A++ A+
Sbjct: 1336 LSIN---FGCSEWRMGALETETLIPGKGKAIAAMVMIHDKVHFHSLGQSGRYARVRASHA 1392
Query: 263 ALEKL 267
ALEKL
Sbjct: 1393 ALEKL 1397
>gi|270308287|ref|YP_003330345.1| ribonuclease III [Dehalococcoides sp. VS]
gi|270154179|gb|ACZ62017.1| ribonuclease III [Dehalococcoides sp. VS]
Length = 248
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 122/259 (47%), Gaps = 48/259 (18%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYP 92
+E + F+N LLE+AL H+S+ + + S +R+EF+GDA LG+ ++ ++ +P
Sbjct: 18 LEESLGVKFENPSLLEQALIHTSWVNENPTHLNGSNERMEFLGDAVLGVIFADRLYHDFP 77
Query: 93 QLDPGQLSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTA 150
+ G L+ R+ + E L RVA + G Y ++ E VS+
Sbjct: 78 DIQEGDLTRFRSLLVRRESLVRVALGINLGNYLYLGR------------GEDVSK----- 120
Query: 151 VYGGSIKAPKVLADIVESIAAAIYVD--IDFDLQKLWMIFRGLLEPIVT----------L 198
G K P LA E++ AAIY+D ID + ++ +FR +E + T L
Sbjct: 121 ---GRFK-PANLAGAFEAVLAAIYIDKGIDITREVIFRLFRTEMERVQTLSSNIDYKSRL 176
Query: 199 EELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLN 258
+EL Q +T +++ +G + NR +A VY + +A S K+ A+ +
Sbjct: 177 QELIQAQMQMTPRYRITNFSGPE-------HNRLFVAEVYTEDKVLAEGSGRSKKEAETS 229
Query: 259 AAREALEKLAQSMPVNCDV 277
AA+ AL++ S ++
Sbjct: 230 AAKAALQQFENSFTAEDNI 248
>gi|408410988|ref|ZP_11182176.1| Ribonuclease III [Lactobacillus sp. 66c]
gi|407874846|emb|CCK83982.1| Ribonuclease III [Lactobacillus sp. 66c]
Length = 232
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 118/240 (49%), Gaps = 45/240 (18%)
Query: 47 FKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
FK++RLLEEA THSSY + +Y++LEF+GDA L +S+Y++ + +L+ G+L+
Sbjct: 18 FKDERLLEEAFTHSSYVNENPRKNYGNYEKLEFLGDAVLEFTVSDYLYRHFQKLNEGELT 77
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
LR+ + TE ++VA++ GF +E V +E G +
Sbjct: 78 RLRSNIVRTEGFSKVALECGF--------------KEEIQLGVGEEK-----AGGRERKA 118
Query: 161 VLADIVESIAAAIYVDI------DFDLQKLW-MIFRGLLEPI----VTLEELQQQPQPVT 209
+L D+ E+ A+++D +F Q ++ +I G P L+E QQ V
Sbjct: 119 LLEDVFEAFNGALFLDQGISAVENFLKQTVYPLIDAGYFTPSRDFKTDLQEFLQQNGTVK 178
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
+ +++ +++ + H+ V VDG +A K+ A+ +AA+ AL +L +
Sbjct: 179 IEYRVLKESQQP---PHFE------VEVSVDGQVLAQGEGRNKKKAEQDAAKHALSRLNE 229
>gi|420401804|ref|ZP_14900995.1| ribonuclease III [Helicobacter pylori CPY6081]
gi|393017623|gb|EJB18775.1| ribonuclease III [Helicobacter pylori CPY6081]
Length = 239
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVQKITQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|420395321|ref|ZP_14894548.1| ribonuclease III [Helicobacter pylori CPY1124]
gi|393013757|gb|EJB14931.1| ribonuclease III [Helicobacter pylori CPY1124]
Length = 238
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 126/261 (48%), Gaps = 51/261 (19%)
Query: 29 SPEMEDAVFY-VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYV 87
SP + ++ + +E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + +
Sbjct: 9 SPYVTNSSYVTLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELL 68
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
+ + Q D G+LS LRA+ +S HGF K + AL D + S E+
Sbjct: 69 YHKFYQYDEGKLSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE 113
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDID------------------FDLQKLWMIFR 189
+ G K P +L+ E++ A +Y++ DL+ L+M ++
Sbjct: 114 ---ISKGREK-PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK 169
Query: 190 GLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASS 249
L+EL Q V ++L ++ G +++ ++Y+ A+A
Sbjct: 170 ------TALQELTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKG 216
Query: 250 EQKEIAKLNAAREALEKLAQS 270
+ K+ A+ A +AL+KL ++
Sbjct: 217 KSKKEAEQQCAYQALQKLKEA 237
>gi|425789256|ref|YP_007017176.1| ribonuclease III [Helicobacter pylori Aklavik117]
gi|425627571|gb|AFX91039.1| ribonuclease III [Helicobacter pylori Aklavik117]
Length = 238
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 126/261 (48%), Gaps = 51/261 (19%)
Query: 29 SPEMEDAVF-YVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYV 87
SP + ++ + +E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + +
Sbjct: 9 SPYITNSSYATLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELL 68
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
+ + Q D G+LS LRA+ +S HGF K + AL D + S E+
Sbjct: 69 YHKFYQYDEGKLSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE 113
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDID------------------FDLQKLWMIFR 189
+ G K P +L+ E++ A +Y++ DL+ L+M ++
Sbjct: 114 ---ISKGREK-PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK 169
Query: 190 GLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASS 249
L+EL Q V ++L ++ G +++ ++Y+ A+A
Sbjct: 170 ------TALQELTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKG 216
Query: 250 EQKEIAKLNAAREALEKLAQS 270
+ K+ A+ A +AL+KL ++
Sbjct: 217 KSKKEAEQQCAYQALQKLKEA 237
>gi|385225363|ref|YP_005785288.1| ribonuclease III [Helicobacter pylori 83]
gi|332673509|gb|AEE70326.1| ribonuclease III [Helicobacter pylori 83]
Length = 239
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKITQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|327399771|ref|YP_004340640.1| ribonuclease 3 [Hippea maritima DSM 10411]
gi|327182400|gb|AEA34581.1| Ribonuclease 3 [Hippea maritima DSM 10411]
Length = 234
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 121/249 (48%), Gaps = 48/249 (19%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD--STSYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
E + Y FKNK LL+ ALTH SY + S +RLEF+GDA L L ++ ++ Y +D G
Sbjct: 14 EERLGYTFKNKELLKRALTHRSYVKDKAKSNERLEFLGDAVLELVVTEFLINNYKNIDEG 73
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKV----KEFAEAVSQEDNTAVYG 153
+LS +RAA+++T+ L+++A K L D++ E E ++ D+
Sbjct: 74 KLSKIRAASVNTKTLSKLARK-----------LELSDQILVGRSEKKEGITNNDS----- 117
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM--IFRGLLEPIVT----------LEEL 201
+L D E+I AIY+D D + ++ + + + IV L+E+
Sbjct: 118 -------ILEDAFEAIVGAIYLDGGLDKARRFVEHMLKDTIIAIVENGIIFDYKTHLQEI 170
Query: 202 QQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
Q+ + + +++G++ N+ V + G + K+ A+ NAA+
Sbjct: 171 TQKQFGCLPEYVIVKEDGQE-------HNKTFYCDVMIKGVKYGFGIGKSKKDAEKNAAK 223
Query: 262 EALEKLAQS 270
EA++KL Q+
Sbjct: 224 EAVKKLEQN 232
>gi|409349323|ref|ZP_11232815.1| Ribonuclease III [Lactobacillus equicursoris CIP 110162]
gi|407878260|emb|CCK84873.1| Ribonuclease III [Lactobacillus equicursoris CIP 110162]
Length = 232
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 118/240 (49%), Gaps = 45/240 (18%)
Query: 47 FKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
FK++RLLEEA THSSY + +Y++LEF+GDA L +S+Y++ + +L+ G+L+
Sbjct: 18 FKDERLLEEAFTHSSYVNENPRKNYGNYEKLEFLGDAVLEFTVSDYLYRHFQKLNEGELT 77
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
LR+ + TE ++VA++ GF +E V +E G +
Sbjct: 78 RLRSNIVRTEGFSKVALECGF--------------KEEIQLGVGEEK-----AGGRERKA 118
Query: 161 VLADIVESIAAAIYVDI------DFDLQKLW-MIFRGLLEPI----VTLEELQQQPQPVT 209
+L D+ E+ A+++D +F Q ++ +I G P L+E QQ V
Sbjct: 119 LLEDVFEAFNGALFLDQGIGAVENFLKQTVYPLIDAGYFTPSRDFKTDLQEFLQQNGTVK 178
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
+ +++ +++ + H+ V VDG +A K+ A+ +AA+ AL +L +
Sbjct: 179 IEYRVLKESQQP---PHFE------VEVSVDGQVLAQGEGRNKKKAEQDAAKHALSRLNE 229
>gi|350630584|gb|EHA18956.1| hypothetical protein ASPNIDRAFT_42773 [Aspergillus niger ATCC 1015]
Length = 1498
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 117/267 (43%), Gaps = 40/267 (14%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQL 94
+E ++Y F+ LL A TH SY + + YQRLEF+GD+ + + +F +P
Sbjct: 1203 LEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDR 1262
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV----SQEDNTA 150
DP L+ + A +S + L +AVK G + +++ +A L ++ ++AE + + +
Sbjct: 1263 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGAV 1322
Query: 151 VYGGSIKAP-----------------KVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLE 193
Y K P + L D+VE+ A++VD DF+ + + FR ++
Sbjct: 1323 DYWTVTKDPPKVMTPSALRNTANVDGQCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIK 1382
Query: 194 PI---VTLEELQQQPQPVTLL----------FKLCQKNGKQVDIKHWRKNRKNIASVYVD 240
P + + + P T L C K G+ I +A+V V
Sbjct: 1383 PFFEDMAIYDTFANKHPTTFLHNRLTNEFGCVNYCLKAGEMPSIDG--APAGVLAAVIVH 1440
Query: 241 GSFVASASSEQKEIAKLNAAREALEKL 267
+A ++ AK+ A+ +AL L
Sbjct: 1441 DVVIAEGTATSGRYAKVKASEKALAVL 1467
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L AV YK++R
Sbjct: 1035 NYERLEFLGDCFLKMATSISLFTQNPDDDEFDYHVNRMCLICNKNLFNAAVDKEIYKYIR 1094
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIK---APKVLADIVESIAAA 172
+ E + + +D++ K A K +AD+ E++ A
Sbjct: 1095 SRGFSRHTWYPEGLKLLQGKDHSRKATTESKHALAEKTIADVCEALIGA 1143
>gi|384896042|ref|YP_005770031.1| ribonuclease III [Helicobacter pylori 35A]
gi|315586658|gb|ADU41039.1| ribonuclease III [Helicobacter pylori 35A]
Length = 238
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 20 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 79
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 80 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE---ISKGREK- 120
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 121 PSILSSAFEALMAGVYLEAGLAKVCKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 174
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 175 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 227
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 228 YQALQKLKEA 237
>gi|16803845|ref|NP_465330.1| ribonuclease III [Listeria monocytogenes EGD-e]
gi|386050782|ref|YP_005968773.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404284301|ref|YP_006685198.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|405758856|ref|YP_006688132.1| ribonuclease III [Listeria monocytogenes SLCC2479]
gi|22654060|sp|Q8Y691.1|RNC_LISMO RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16411259|emb|CAC99883.1| rncS [Listeria monocytogenes EGD-e]
gi|346424628|gb|AEO26153.1| ribonuclease III [Listeria monocytogenes FSL R2-561]
gi|404233803|emb|CBY55206.1| ribonuclease III [Listeria monocytogenes SLCC2372]
gi|404236738|emb|CBY58140.1| ribonuclease III [Listeria monocytogenes SLCC2479]
Length = 229
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 47/244 (19%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+ ++FKN LL++A THSSY + +RLEF+GDA L L +S+Y+F YP +
Sbjct: 11 VGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAE 70
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G ++ +RAA + L A F K+VR K +E A GG
Sbjct: 71 GHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG------KGEEKA------------GGRT 112
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQ 203
+ P +LAD+ ES A+Y+D D K+ ++ P + L+E+ Q
Sbjct: 113 R-PALLADVFESFIGALYLDNGID--KVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQ 169
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
+ + V + + + + G N+ A V V+G + S K+ A+ +AA+ A
Sbjct: 170 RDRDVLIEYDILGETGPA-------HNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFA 222
Query: 264 LEKL 267
+ KL
Sbjct: 223 INKL 226
>gi|387782339|ref|YP_005793052.1| ribonuclease III [Helicobacter pylori 51]
gi|261838098|gb|ACX97864.1| ribonuclease III [Helicobacter pylori 51]
Length = 239
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
>gi|404329166|ref|ZP_10969614.1| ribonuclease III [Sporolactobacillus vineae DSM 21990 = SL153]
Length = 242
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 115/249 (46%), Gaps = 55/249 (22%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
++ F + LL EA THSSY + +Y+RLEF+GDA + L +S Y+F YP L
Sbjct: 25 FSFAFNQEELLFEAFTHSSYVNEHREENLENYERLEFLGDAVMELMVSQYLFKHYPGLSE 84
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G ++ LRAA + + G F A++L F + + V GG
Sbjct: 85 GDMTKLRAA---------IVCETGLVMF----ASSLS-----FDQLIFLGRGEKVTGGQN 126
Query: 157 KAPKVLADIVESIAAAIYVD-----------------IDFDLQKLWMIFRGLLEPIVTLE 199
+ P +L D+ E+ A+Y+D ID M F+ L+ V +
Sbjct: 127 R-PGLLCDVFEAFVGALYLDQGLEAVGRFLKQVVYPRIDDGTFSHVMDFKSQLQETVQRQ 185
Query: 200 ELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNA 259
+L + VT+ + +G+ + + +A V +DG ++S + K+ A+ NA
Sbjct: 186 DLGELDYAVTM-----EMDGE--------RQKGFLAKVLLDGKAISSGQGQSKKDAEQNA 232
Query: 260 AREALEKLA 268
AREAL+K+A
Sbjct: 233 AREALKKIA 241
>gi|420406849|ref|ZP_14906019.1| ribonuclease III [Helicobacter pylori CPY6311]
gi|393023686|gb|EJB24800.1| ribonuclease III [Helicobacter pylori CPY6311]
Length = 238
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 20 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 79
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 80 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLRISSSEE---ISNGREK- 120
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 121 PSILSSAFEALMAGVYLEAGLAKVRKITQNLLNRAYKRLDLEHLFMDYK------TALQE 174
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 175 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 227
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 228 YQALQKLKEA 237
>gi|365845433|ref|ZP_09386204.1| ribonuclease III [Flavonifractor plautii ATCC 29863]
gi|373118094|ref|ZP_09532230.1| ribonuclease III [Lachnospiraceae bacterium 7_1_58FAA]
gi|364560272|gb|EHM38214.1| ribonuclease III [Flavonifractor plautii ATCC 29863]
gi|371667658|gb|EHO32777.1| ribonuclease III [Lachnospiraceae bacterium 7_1_58FAA]
Length = 225
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 114/245 (46%), Gaps = 43/245 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLALSNYVFLAYP 92
+E + Y F N+ LE ALTHSSY + S +RLEF+GD+ LG+ +++Y+F +P
Sbjct: 4 LEEKLGYRFTNRAFLENALTHSSYANENKAKGLQSNERLEFLGDSVLGMVVADYLFRTHP 63
Query: 93 QLDPGQLSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTA 150
L G L+ RAA + L VA ++ G Y K+ + EA
Sbjct: 64 DLPEGDLTRTRAALVCEGSLVEVAQCLELGAYL-----------KLGKGEEA-------- 104
Query: 151 VYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP--V 208
GG + P ++AD VE++ AA+Y+D R L++ + E ++
Sbjct: 105 --GGGRERPSIIADAVEAVLAAVYLDGGIGSA------RKLIQKFILDREAEKSASRDYK 156
Query: 209 TLLFKLCQKNGKQV----DIKHWRKNRKNIASVYVD--GSFVASASSEQKEIAKLNAARE 262
T L +L Q+ QV I + I SV VD G + K+ A+ NAA+
Sbjct: 157 TALQELVQRESGQVLGYQLIGAEGPDHAKIFSVEVDLNGIPIGQGRGRSKKEAEQNAAKA 216
Query: 263 ALEKL 267
A+EKL
Sbjct: 217 AIEKL 221
>gi|384894291|ref|YP_005768340.1| ribonuclease III [Helicobacter pylori Sat464]
gi|308063545|gb|ADO05432.1| ribonuclease III [Helicobacter pylori Sat464]
Length = 238
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 50/247 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 20 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 79
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 80 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE---ISNGREK- 120
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 121 PSILSSAFEALMAGVYLEAGLAKVQKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 174
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 175 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 227
Query: 261 REALEKL 267
+AL+KL
Sbjct: 228 YQALQKL 234
>gi|425772078|gb|EKV10503.1| RNA helicase/RNAse III, putative [Penicillium digitatum Pd1]
gi|425777255|gb|EKV15436.1| RNA helicase/RNAse III, putative [Penicillium digitatum PHI26]
Length = 1372
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 9/162 (5%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+ Y FK RLL A TH SY + + YQRLE++GDA L + ++F +P DP
Sbjct: 1194 VGYEFKYPRLLRSAFTHPSYPLTWAKVPCYQRLEYLGDALLDMVCVEHLFHRFPTRDPQW 1253
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS---QEDNTAV--YG 153
L+ + A +S + L +AVK G + ++H + L + ++AE + E N V +
Sbjct: 1254 LTEHKMAMVSNKFLGALAVKLGLHLHLQHFSNPLMIQNSKYAEELQLAESESNGEVNYWL 1313
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195
+ +PK L D++E+ AI+VD FD + F+ + P
Sbjct: 1314 STSDSPKCLPDMLEAYLGAIFVDSSFDFTVIEAFFKRHILPF 1355
>gi|255655258|ref|ZP_05400667.1| ribonuclease III [Clostridium difficile QCD-23m63]
gi|296451243|ref|ZP_06892983.1| ribonuclease III [Clostridium difficile NAP08]
gi|296880405|ref|ZP_06904368.1| ribonuclease III [Clostridium difficile NAP07]
gi|296259849|gb|EFH06704.1| ribonuclease III [Clostridium difficile NAP08]
gi|296428646|gb|EFH14530.1| ribonuclease III [Clostridium difficile NAP07]
Length = 236
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 119/258 (46%), Gaps = 50/258 (19%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALS 84
S ++ D + EN+INY FKNK + EALTHSSY++ +RLEF+GD+ LG+ +S
Sbjct: 4 SKKLLDNIQRFENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIVIS 63
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEA 142
+Y+F L G+L+ LRA + + L+ VA + G + + A
Sbjct: 64 DYLFNEEANLPEGELTKLRANIVCEDSLSEVANDINLGVHMLLGRGEEAT---------- 113
Query: 143 VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV------ 196
G +LAD E++ AAIY+D F+ + +++ +E I+
Sbjct: 114 -----------GGRHRTSILADAFEAVIAAIYLDGGFESARQFILHH--MENIIYDSRKG 160
Query: 197 --------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASAS 248
L+E+ Q + ++L ++ G N++ + V ++ +
Sbjct: 161 NIFRDYKTHLQEVLQGNGENNIWYRLIEEKGPD-------HNKRFVMEVGINEDVLGIGE 213
Query: 249 SEQKEIAKLNAAREALEK 266
+ K+ A+ AA+ AL+K
Sbjct: 214 GKSKKEAEQLAAKIALKK 231
>gi|440780908|ref|ZP_20959379.1| ribonuclease III [Clostridium pasteurianum DSM 525]
gi|440221496|gb|ELP60701.1| ribonuclease III [Clostridium pasteurianum DSM 525]
Length = 231
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 115/245 (46%), Gaps = 39/245 (15%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQ---RLEFIGDAALGLALSNYVFLAYPQLD 95
+E I+ +F +K LL A+THSSY + + Q RLEF+GD+ L + +S Y+FL Y
Sbjct: 9 LEKILKIDFHDKNLLRTAITHSSYANQKNIQYNERLEFLGDSVLQIVISEYLFLNYKDKT 68
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
G+LS RA + L ++A K++ S + GG
Sbjct: 69 EGELSKKRALIVCENSLFKIANSWHLGKYIFMSKGE------------------EITGGR 110
Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPV----TLL 211
+ +L+D VE+I AAIY+D F+ K + +L + E+ + Q + T L
Sbjct: 111 TRVS-ILSDCVEAIIAAIYLDKGFEFSKEF-----ILSNFQKIIEMAMKNQIILDYKTRL 164
Query: 212 FKLCQKNGKQVDIKHWR-------KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 264
++ QKNG DIK+ RK SV +G+ + K+ A+ +AA+ AL
Sbjct: 165 QEVLQKNG-DADIKYKLLKFEGPPHRRKFYISVAFNGTLKGEGTGFSKKEAEQDAAQTAL 223
Query: 265 EKLAQ 269
+ + +
Sbjct: 224 KTIGE 228
>gi|410479646|ref|YP_006767283.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
gi|406774898|gb|AFS54323.1| dsRNA-specific ribonuclease [Leptospirillum ferriphilum ML-04]
Length = 247
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 119/247 (48%), Gaps = 37/247 (14%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD-------STSYQRLEFIGDAALGLALSNYVFLAY 91
+E+ + Y F+ LLEEA TH S+ + + + +RLEF+GD LGL ++ Y+ + Y
Sbjct: 10 LEDRLRYRFRKIDLLEEATTHKSFMNEGRRLGVTQNNERLEFLGDTVLGLVVAEYLMVTY 69
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV 151
P+ G LS + +S LA V+ G F+ L K +E + +
Sbjct: 70 PKYPEGILSKFKGRVVSEPTLASVSRALGIGGFL------LIGKGEELTQGREKSS---- 119
Query: 152 YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIVTLEELQQQPQPVT 209
+LAD +E++ AAIY+D D + ++I FR ++E V + +Q T
Sbjct: 120 ---------LLADAMEAVIAAIYLDSGLDAARTFIIGHFRSVIEQTVHEDSIQDYK---T 167
Query: 210 LLFKLCQKNGK-----QVDIKHWRKNRKNI-ASVYVDGSFVASASSEQKEIAKLNAAREA 263
L + CQ+ + QV + ++K +V + G S + K+ A+ AA++A
Sbjct: 168 DLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGKSKKEAEQKAAKDA 227
Query: 264 LEKLAQS 270
L +LA++
Sbjct: 228 LSRLART 234
>gi|385215924|ref|YP_005775881.1| ribonuclease III [Helicobacter pylori F32]
gi|317180453|dbj|BAJ58239.1| ribonuclease III [Helicobacter pylori F32]
Length = 238
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 50/247 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 20 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 79
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 80 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE---ISKGREK- 120
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 121 PSILSSAFEALMAGVYLEAGLAKVRKITQNLLNRAYKRLDLEHLFMDYK------TALQE 174
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 175 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 227
Query: 261 REALEKL 267
+AL+KL
Sbjct: 228 YQALQKL 234
>gi|188527489|ref|YP_001910176.1| ribonuclease III [Helicobacter pylori Shi470]
gi|238691923|sp|B2UTG4.1|RNC_HELPS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|188143729|gb|ACD48146.1| ribonuclease III [Helicobacter pylori Shi470]
Length = 238
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 50/247 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 20 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 79
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 80 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLHISSSEE---ISNGREK- 120
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 121 PSILSSAFEALMAGVYLEAGLAKVQKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 174
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 175 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 227
Query: 261 REALEKL 267
+AL+KL
Sbjct: 228 YQALQKL 234
>gi|424866544|ref|ZP_18290379.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
gi|124515064|gb|EAY56575.1| ribonuclease III [Leptospirillum rubarum]
gi|387222846|gb|EIJ77248.1| Ribonuclease III [Leptospirillum sp. Group II 'C75']
Length = 247
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 119/247 (48%), Gaps = 37/247 (14%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD-------STSYQRLEFIGDAALGLALSNYVFLAY 91
+E+ + Y F+ LLEEA TH S+ + + + +RLEF+GD LGL ++ Y+ + Y
Sbjct: 10 LEDRLRYRFRKIDLLEEATTHKSFMNEGRRLGVTRNNERLEFLGDTVLGLVVAEYLMVTY 69
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV 151
P+ G LS + +S LA V+ G F+ L K +E + +
Sbjct: 70 PKYPEGILSKFKGRVVSEPTLASVSRALGIGGFL------LIGKGEELTQGREKSS---- 119
Query: 152 YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIVTLEELQQQPQPVT 209
+LAD +E++ AAIY+D D + ++I FR ++E V + +Q T
Sbjct: 120 ---------LLADAMEAVIAAIYLDSGLDAARTFIIGHFRSVIEQTVHEDSIQDYK---T 167
Query: 210 LLFKLCQKNGK-----QVDIKHWRKNRKNI-ASVYVDGSFVASASSEQKEIAKLNAAREA 263
L + CQ+ + QV + ++K +V + G S + K+ A+ AA++A
Sbjct: 168 DLQEYCQRELETLPVYQVMDQRGPDHQKEFDVAVLIRGKIYGEGSGKSKKEAEQKAAKDA 227
Query: 264 LEKLAQS 270
L +LA++
Sbjct: 228 LSRLART 234
>gi|403069218|ref|ZP_10910550.1| ribonuclease III [Oceanobacillus sp. Ndiop]
Length = 227
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 114/245 (46%), Gaps = 45/245 (18%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYP 92
+EN +N F + L+++A THSSY + + +RLEF+GDA L L +S Y+F
Sbjct: 6 LENELNIKFHDHSLIKQAFTHSSYVNEHRKTVFSDNERLEFLGDAVLELGVSQYLFRKNQ 65
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ G+++ LRAA + L AV+ F +F+ L K +E
Sbjct: 66 DMPEGEMTKLRAAIVCEPSLMNFAVELNFGEFL------LLGKGEEMT------------ 107
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT------------LEE 200
G + P +LAD+ E+ A+Y+D FD + L + + I T L+E
Sbjct: 108 -GGRERPAILADVFEAFLGALYLDQGFD-EALRFLKEHVFPKINTGAFSHAMDYKSQLQE 165
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L QQ + T+ +K+ ++ G NR+ +A + G+ + K+ A+ AA
Sbjct: 166 LIQQNKNQTIEYKIVEEKGPS-------HNREFVAHAVIKGNKAGEGTGRTKKEAEQRAA 218
Query: 261 REALE 265
+ AL+
Sbjct: 219 KYALD 223
>gi|343428057|emb|CBQ71581.1| related to cell cycle control protein dicer [Sporisorium reilianum
SRZ2]
Length = 1683
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDST--SYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+++++ ++ ++ L EA TH S S SYQRLEF+GDA L + +F +
Sbjct: 1333 HLQSLFDHTYRYPHLGLEAFTHPSLLASVLPSYQRLEFLGDAWLDFCIVRMIFAEGEERS 1392
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY--- 152
PG+++ + S L + V+ G + FV +A L D + +A A+ D Y
Sbjct: 1393 PGEMTAHKGVLASNGALGALGVRLGLHAFVASDSAVLGDSIARYAAALGSVDEKGQYWTR 1452
Query: 153 -GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195
+ PK +AD+VE+ A+I VD FD + + +F + P
Sbjct: 1453 LARGVVVPKAVADVVEASFASIVVDSGFDARVVQRVFELMCVPF 1496
>gi|429205352|ref|ZP_19196629.1| ribonuclease III [Lactobacillus saerimneri 30a]
gi|428146424|gb|EKW98663.1| ribonuclease III [Lactobacillus saerimneri 30a]
Length = 230
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 114/241 (47%), Gaps = 47/241 (19%)
Query: 46 NFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYPQLDPGQL 99
+F N LL+EA TH+SY + Y+R+EF+GDA + L +S Y+F YP + G+L
Sbjct: 16 DFHNPDLLDEAFTHASYANEHKREHLKYYERIEFLGDAVMQLCVSEYLFKRYPLMPEGKL 75
Query: 100 SLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAP 159
S LRAA + E ++ AV+ F +++R +E + A + P
Sbjct: 76 SRLRAAMVREESFSKFAVECHFDEYIRLGKG--------------EEKSNAR-----QRP 116
Query: 160 KVLADIVESIAAAIYVDIDFD-----LQKL--------WMIFRGLLEPIVTLEELQQQPQ 206
+L DI E+ A+Y+D D +Q++ W + LL+ L+E QQ
Sbjct: 117 ALLCDIFEAFIGALYLDQGKDEVVRFIQRVVFPKLDMGW--YDQLLDHKTELQEFLQQSG 174
Query: 207 PVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEK 266
T+++K + G D KH+ V VDG + K+ A+ AA +AL++
Sbjct: 175 ERTIVYKEIGETGPDND-KHY------AMEVSVDGKVIGKGEGHSKKAAEQAAAFQALKE 227
Query: 267 L 267
L
Sbjct: 228 L 228
>gi|328773741|gb|EGF83778.1| hypothetical protein BATDEDRAFT_85615 [Batrachochytrium dendrobatidis
JAM81]
Length = 1746
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 131/276 (47%), Gaps = 24/276 (8%)
Query: 15 DYRLLKEAMLTSLPSPEM----EDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQR 70
D L + ++S+ +P + ++ V +V+ ++YNF N LL AL Y + ++R
Sbjct: 1456 DTNKLHDHQISSMQNPILSRLDQETVDHVQQKLSYNFHNPELLLIALMTPFYFVKSKFER 1515
Query: 71 LEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAA 130
LEF+GDA + + ++ Y + Y DP LS + A + ++ V ++ + S +
Sbjct: 1516 LEFLGDAIMDILVARYFYRHYKHADPCSLSKMIQATVCKPAFCKILVSLKLHEHLLQS-S 1574
Query: 131 ALDDKVKE----FAEAVSQEDNTAVYGGSIKA---PKVLADIVESIAAAIYVDIDFDLQK 183
L KE +A + + + + KA PKVL D+ E I AAI++D ++L++
Sbjct: 1575 QLSQHSKEAIVLYANYIQNSHSQHAFKQADKAIDGPKVLCDVFEVIVAAIFIDTGYNLER 1634
Query: 184 LWMIF----RGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNI----- 234
++ ++ + LE + + P+ LF Q G + K + N
Sbjct: 1635 TRLVIFPYVHSFIQSNINLETITE--PPIRQLFAFVQSQGFSSE-KLELSDESNADGFHK 1691
Query: 235 ASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270
ASV G+ +A++ + ++AK +A+ +AL L +
Sbjct: 1692 ASVVFYGTVLATSQATTLKLAKQHASIKALNVLKHT 1727
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 53 LEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKL 112
L A T + T+Y+RLE +GD L +++Y+ +Y + GQLS + + +S + L
Sbjct: 1300 LMSAFTTPAANSITNYERLETLGDKVLKFGVAHYLHSSYQSYEVGQLSTILSGLVSNKNL 1359
Query: 113 ARVAVKHGF 121
+A +H
Sbjct: 1360 FEIAQQHSL 1368
>gi|315044595|ref|XP_003171673.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893]
gi|311344016|gb|EFR03219.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893]
Length = 1518
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 9/178 (5%)
Query: 25 TSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSY----TDSTSYQRLEFIGDAALG 80
T++ S D +++ + Y F+ +LL A H SY + YQRLEF+GD+ L
Sbjct: 1224 TAVASASEIDVANQIKSKLGYCFRYPKLLRSAFMHPSYPSQWANVPCYQRLEFLGDSLLD 1283
Query: 81 LALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA 140
+ N++F YP DP L+ + A +S + L +AV + + H + L ++ +
Sbjct: 1284 MVCVNHLFERYPDKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQGQITSYT 1343
Query: 141 E-----AVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLE 193
E + E N + + + PK L DIVE+ A++VD +F+ + FR ++
Sbjct: 1344 EELQAMKIKMEGNLEAWTYTNEPPKCLPDIVEAYLGAMFVDSNFNFDVVDDFFRKFIQ 1401
>gi|403383371|ref|ZP_10925428.1| ribonuclease 3 [Kurthia sp. JC30]
Length = 251
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 121/266 (45%), Gaps = 56/266 (21%)
Query: 30 PEMEDAVF-YVENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLA 82
PE + A F +++ + +F NK LL A THSSY + +RLEF+GDA L L
Sbjct: 14 PEQDRAKFEQLQDNLGLHFDNKNLLYNAFTHSSYVNEHRRKQYEDNERLEFLGDAVLELT 73
Query: 83 LSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEA 142
+S ++FL +P++ G+L+ LRAA + L A + F +FV L K +E
Sbjct: 74 VSKFLFLKFPKMTEGELTKLRAAIVCEPSLVIFANELNFGEFV------LLGKGEEIT-- 125
Query: 143 VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV------ 196
G + P +LAD E+ A+Y+D Q L + G LE +V
Sbjct: 126 -----------GGRERPALLADCFEAFVGALYLD-----QGLETVV-GFLETVVFPKVEL 168
Query: 197 -----------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVA 245
L+E+ QQ L + + ++NG NR ++ V ++G +
Sbjct: 169 GMFSHVMDFKSQLQEMVQQANSGALQYTIIKENGPA-------HNRTFVSQVMLNGKELG 221
Query: 246 SASSEQKEIAKLNAAREALEKLAQSM 271
+ + K+ A+ AA+ A+ L + +
Sbjct: 222 VGNGKSKKEAEQKAAQSAMVALKKQL 247
>gi|335996787|ref|ZP_08562704.1| ribonuclease III [Lactobacillus ruminis SPM0211]
gi|335351857|gb|EGM53348.1| ribonuclease III [Lactobacillus ruminis SPM0211]
Length = 230
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 108/239 (45%), Gaps = 47/239 (19%)
Query: 46 NFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQL 99
N KN L +EA TH+SY + Y+R+EF+GDA + L +S Y+F YP G+L
Sbjct: 16 NVKNTDLFDEAFTHASYVNEHPKEHLKYYERIEFLGDAVMQLCVSEYLFKRYPSFPEGKL 75
Query: 100 SLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAP 159
S LRAA + + ++ A + F +++R K +E A+A ++
Sbjct: 76 SRLRAAMVCEDSFSKFAKECHFDEYIRLG------KGEEKADARNR-------------S 116
Query: 160 KVLADIVESIAAAIYVD------IDF-------DLQKLWMIFRGLLEPIVTLEELQQQPQ 206
+L DI ES A+Y+D ++F L W F LL+ L+E QQ
Sbjct: 117 SLLCDIFESFIGALYLDQGKDKVVEFISAVVFPKLDMGW--FDHLLDHKTELQEYLQQNG 174
Query: 207 PVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+ +K+ + G D + +VY DG + K+ A+ AA +AL+
Sbjct: 175 DCKIEYKMLDEKGPDND-------KTYTMAVYADGKKIGEGVGSSKKNAEQAAAYQALK 226
>gi|184155714|ref|YP_001844054.1| ribonuclease III [Lactobacillus fermentum IFO 3956]
gi|227515694|ref|ZP_03945743.1| ribonuclease III [Lactobacillus fermentum ATCC 14931]
gi|385812507|ref|YP_005848898.1| ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus
fermentum CECT 5716]
gi|238692982|sp|B2GD42.1|RNC_LACF3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|183227058|dbj|BAG27574.1| ribonuclease III [Lactobacillus fermentum IFO 3956]
gi|227085942|gb|EEI21254.1| ribonuclease III [Lactobacillus fermentum ATCC 14931]
gi|299783404|gb|ADJ41402.1| Ribonuclease 3 (Ribonuclease III) (RNase III) [Lactobacillus
fermentum CECT 5716]
Length = 232
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 114/249 (45%), Gaps = 47/249 (18%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAY 91
Y+ +F N LL EA T +SY + Y+R+EF+GDA L L +S Y++ Y
Sbjct: 8 YLAKTYGIHFNNPALLAEAFTQASYVNEHPHENLKYYERIEFLGDAVLQLFVSEYIYRRY 67
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV 151
P+L G+L+ LRAA + + ++ A + F +++R K +E A
Sbjct: 68 PELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLG------KGEEMA----------- 110
Query: 152 YGGSIKAPKVLADIVESIAAAIYVD-----IDFDLQKL--------WMIFRGLLEPIVTL 198
G+ +L DI ES A+Y+D ++ +Q + W F ++ +L
Sbjct: 111 --GARNRASLLCDIFESFIGALYLDQGRQAVEQFIQTVIFPKLDLGW--FDHAVDAKTSL 166
Query: 199 EELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLN 258
+E Q+ V + + L + G + D V VDG VA+ K+ A++
Sbjct: 167 QEFLQRNGDVAIEYDLLSEGGTENDPVFE-------VEVTVDGKKVATGQGSSKKHAEME 219
Query: 259 AAREALEKL 267
AA+ ALEKL
Sbjct: 220 AAKHALEKL 228
>gi|353227266|emb|CCA77779.1| hypothetical protein PIIN_03414 [Piriformospora indica DSM 11827]
Length = 1418
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 11/165 (6%)
Query: 16 YRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSY-TDSTSYQRLEFI 74
Y ++ A +S P P +E EN+ Y FK+K LL EALTH S+ + S SYQRLEF+
Sbjct: 1079 YPKVELAFSSSSPFPPLE------ENL-GYTFKDKSLLVEALTHPSFVSGSASYQRLEFL 1131
Query: 75 GDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKH-GFYKFVRHSAAALD 133
GDA L L + F YP G+L+ RA + L+ + K +K + A +L
Sbjct: 1132 GDAVLDLVTVEHFFHLYPNATSGKLTRARARCVCNSTLSALGTKKLEIHKAMFCDAISLV 1191
Query: 134 DKVKEFAEAVSQEDNTAVYGG--SIKAPKVLADIVESIAAAIYVD 176
+ A + D T V + APK L D+VE++ A++VD
Sbjct: 1192 AAANKTARMFNSMDFTQVIDNIWRLDAPKALGDMVEALIGAVFVD 1236
>gi|358067151|ref|ZP_09153633.1| ribonuclease III [Johnsonella ignava ATCC 51276]
gi|356694575|gb|EHI56234.1| ribonuclease III [Johnsonella ignava ATCC 51276]
Length = 253
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 112/245 (45%), Gaps = 41/245 (16%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYP 92
+E+II YNF +K+LL ALTHSSY + + S +RLEF+GDAAL L S + F Y
Sbjct: 32 LESIIGYNFNDKKLLTLALTHSSYANELRLGKTGSNERLEFLGDAALELISSEFFFNKYE 91
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
G L+ RAA + LA A F+R A
Sbjct: 92 HETEGYLTKTRAAFVCEPALAYCAETINLGSFLRLGKG------------------EAST 133
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIF---------RGLLEPIVTLEELQQ 203
GG +++ VL+D +E++ A+Y+D F K +++ R + L+E Q
Sbjct: 134 GGRLRSS-VLSDALEALIGAVYLDGGFASAKEFVLRIVLNDIESKRFFFDSKTILQENIQ 192
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
+ + L +KL ++G H + SV V G +A A K+ A+ AA EA
Sbjct: 193 KDSGMDLEYKLISEDGPD----HM---KTFTVSVNVSGKEIARAEGGSKKSAEQLAAHEA 245
Query: 264 LEKLA 268
L+KL
Sbjct: 246 LKKLG 250
>gi|358058780|dbj|GAA95743.1| hypothetical protein E5Q_02400 [Mixia osmundae IAM 14324]
Length = 1610
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 100/195 (51%), Gaps = 9/195 (4%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST--SYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E+++ Y+F N L +ALTH SY T SY+R EF+GDA L ++ + + P
Sbjct: 1239 LEDLVGYSFSNNDCLIQALTHRSYLSPTTPSYEREEFLGDAMLDFWAITRLYARFDGITP 1298
Query: 97 GQLSLLRAANISTEKLARVA-VKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
QLS LRA + L VA ++ ++V H+A D++ E A+ ++ A +
Sbjct: 1299 QQLSRLRALLVCNGTLGYVAMLRLRLGEYVLHNADEFTDQL-EIAQQQAEAMPPAEFCEQ 1357
Query: 156 I---KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
+ PKVL D VE+IA AI+VD D + ++ F +L P++ PV+ L
Sbjct: 1358 VWFWDPPKVLGDCVEAIAGAIFVDSGGDPELVFKYFDRILGPLMQYISPNMPADPVSRLA 1417
Query: 213 KLCQ--KNGKQVDIK 225
L Q + GK + ++
Sbjct: 1418 HLKQELRAGKSMVLR 1432
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EALT SY+ +E +GD+ L + S +++LAYP G L+ LR ++ L
Sbjct: 1075 EALTLPGSAVGRSYESIETLGDSVLKVLTSVHLYLAYPLKSEGALTCLRTNSVENVYLHH 1134
Query: 115 VAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIY 174
AV+ K++ H L+ + AE + + + I+ + L+D +ESI A Y
Sbjct: 1135 KAVESSLGKYLIHERMRLNTWLPRDAEHSADMGDGCEFERKIQR-RALSDCIESILGAAY 1193
Query: 175 V 175
+
Sbjct: 1194 L 1194
>gi|408399323|gb|EKJ78431.1| hypothetical protein FPSE_01388 [Fusarium pseudograminearum CS3096]
Length = 1860
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 121/265 (45%), Gaps = 39/265 (14%)
Query: 39 VENIINYNFKNKRLLEEALTHSS--YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
V + Y F + LL+ H S Y YQRLEF+GDA L + + ++++ + DP
Sbjct: 1564 VAKVTGYRFNSSALLQSVFKHPSWPYEAVPDYQRLEFLGDALLDMVVVDFLYKRFKLADP 1623
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF----------AEAVSQE 146
L+ + A +S + L + V+ +K + + ++L ++ E+ A V++
Sbjct: 1624 QWLTEHKMAMVSNQFLGCLCVQLNLHKHLLFTTSSLTGQISEYVAELELAKEDAHKVAKA 1683
Query: 147 DNTAV----YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT---LE 199
+ T + + PKVLAD+ E++ A++VD ++ + F +EP T L
Sbjct: 1684 NRTPTRMDFWLHASLPPKVLADVAEALIGAMFVDAKYNYSVVNQFFTRFVEPYFTEMVLY 1743
Query: 200 ELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDG-----------------S 242
+ PVT+ LC+K +++ +WR + ++ +G
Sbjct: 1744 DTFASQHPVTV---LCKKMQQELCCVNWRISVGSVPCTVEEGMAALRDSDVIAVFMAHQK 1800
Query: 243 FVASASSEQKEIAKLNAAREALEKL 267
+ S +S+ AK+ A++AL+K+
Sbjct: 1801 VILSTTSKNSRCAKIAVAKQALKKI 1825
>gi|189425004|ref|YP_001952181.1| ribonuclease III [Geobacter lovleyi SZ]
gi|189421263|gb|ACD95661.1| Ribonuclease III [Geobacter lovleyi SZ]
Length = 228
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 25/144 (17%)
Query: 42 IINYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
I+ ++F N+RLL++ALTH SY + + YQRLEF+GDA LG L++ + +P L
Sbjct: 8 ILGHSFINQRLLQQALTHPSYLNEARQEGAADYQRLEFLGDAVLGFLLADLLCQHFPALP 67
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
G LS LR++ + +LAR+AV G + A + G
Sbjct: 68 EGDLSRLRSSLVDQPRLARLAVDAGIPPLILMGKGAERE-------------------GG 108
Query: 156 IKAPKVLADIVESIAAAIYVDIDF 179
P +LAD+ E++ AI+ D F
Sbjct: 109 RTNPSILADVFEALLGAIHCDAGF 132
>gi|335429770|ref|ZP_08556668.1| ribonuclease III [Haloplasma contractile SSD-17B]
gi|334889780|gb|EGM28065.1| ribonuclease III [Haloplasma contractile SSD-17B]
Length = 239
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 110/239 (46%), Gaps = 43/239 (17%)
Query: 47 FKNKRLLEEALTHSSYT------DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
FK++ LL ALTHSSY D +RLEF+GDA L LA+S Y+FL P ++ G ++
Sbjct: 21 FKDRSLLIRALTHSSYVNEHRTEDLKDNERLEFLGDAVLELAMSRYLFLNLPDVNEGVMT 80
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
RA + L A K K +R E++T G K P
Sbjct: 81 KRRAQYVCEPSLELYANKINLGKLIRLGKG---------------EEHT----GGRKRPA 121
Query: 161 VLADIVESIAAAIYVDIDFD-----LQKLWM--IFRGLLEPIV----TLEELQQQPQPVT 209
+LAD E++ AIY+D+ FD L K+ I G L ++ L+EL Q +
Sbjct: 122 ILADAFEALLGAIYLDLGFDQVYDFLGKVAFPAIKAGTLSHVMDYKSKLQELVQTDSARS 181
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268
+ + + + G N+ +A V +D + K+ A+ NAA+ ALEK+A
Sbjct: 182 VTYLIVDEIGPA-------HNKTFVAEVSMDEIKMGVGEGHSKKEAEQNAAKIALEKMA 233
>gi|420437075|ref|ZP_14936059.1| ribonuclease III [Helicobacter pylori Hp H-28]
gi|393053389|gb|EJB54333.1| ribonuclease III [Helicobacter pylori Hp H-28]
Length = 239
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 119/250 (47%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+ L+KL ++
Sbjct: 229 YQVLQKLKEA 238
>gi|317131320|ref|YP_004090634.1| ribonuclease III [Ethanoligenens harbinense YUAN-3]
gi|315469299|gb|ADU25903.1| ribonuclease III [Ethanoligenens harbinense YUAN-3]
Length = 226
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 116/248 (46%), Gaps = 43/248 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYP 92
+E + Y F +K LLE ALTHSSY + S +RLEF+GDA LG+ + Y++ +
Sbjct: 5 LEKNLGYTFADKSLLENALTHSSYANEMKKHSCGSNERLEFLGDAVLGIISAEYLYFHHT 64
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
++ G+L+ LRA+ + L GF + V ++ + E+NT
Sbjct: 65 RVPEGELTRLRASMVCERSL------QGFARTV---------ELGRWLRLGRGEENT--- 106
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM------IFRGLLEPI-----VTLEEL 201
G + +LAD E++ AAIY+D F K ++ F LE L+E+
Sbjct: 107 -GGRERSSILADAFEAVIAAIYIDGGFPAAKRFVTRFADSFFAAHLENGRRDYKTELQEI 165
Query: 202 QQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
Q+ L + L ++G D ++ + V+++ + + + K+ A+ AAR
Sbjct: 166 VQKNHGEKLEYVLVGESGPDHD-------KQFLVEVHLNNNCIGAGRGGSKKEAEQMAAR 218
Query: 262 EALEKLAQ 269
EAL + Q
Sbjct: 219 EALSLMGQ 226
>gi|425791004|ref|YP_007018921.1| ribonuclease III [Helicobacter pylori Aklavik86]
gi|425629319|gb|AFX89859.1| ribonuclease III [Helicobacter pylori Aklavik86]
Length = 238
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 125/257 (48%), Gaps = 43/257 (16%)
Query: 29 SPEMEDAVF-YVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYV 87
SP + ++ + +E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + +
Sbjct: 9 SPYITNSSYATLEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELL 68
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
+ + Q D G+LS LRA+ +S HGF K + AL D + S E+
Sbjct: 69 YHKFYQYDEGKLSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE 113
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI------------ 195
+ G K P +L+ E++ A +Y++ L K+ I + LL
Sbjct: 114 ---ISNGREK-PSILSSAFEALMAGVYLEA--GLAKVQKIIQNLLNRAYKRLDLEHLFID 167
Query: 196 --VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKE 253
L+EL Q V ++L ++ G +++ ++Y+ A+A + K+
Sbjct: 168 YKTALQELTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKK 220
Query: 254 IAKLNAAREALEKLAQS 270
A+ A +AL+KL ++
Sbjct: 221 EAEQQCAYQALQKLKEA 237
>gi|284802251|ref|YP_003414116.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284995393|ref|YP_003417161.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|386044113|ref|YP_005962918.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|386054060|ref|YP_005971618.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404411106|ref|YP_006696694.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|284057813|gb|ADB68754.1| hypothetical protein LM5578_2007 [Listeria monocytogenes 08-5578]
gi|284060860|gb|ADB71799.1| hypothetical protein LM5923_1958 [Listeria monocytogenes 08-5923]
gi|345537347|gb|AEO06787.1| ribonuclease III [Listeria monocytogenes 10403S]
gi|346646711|gb|AEO39336.1| ribonuclease III [Listeria monocytogenes Finland 1998]
gi|404230932|emb|CBY52336.1| ribonuclease III [Listeria monocytogenes SLCC5850]
gi|441471562|emb|CCQ21317.1| Ribonuclease 3 [Listeria monocytogenes]
gi|441474693|emb|CCQ24447.1| Ribonuclease 3 [Listeria monocytogenes N53-1]
Length = 229
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 47/246 (19%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+ ++FKN LL++A THSSY + +RLEF+GDA L L +S+Y+F YP +
Sbjct: 11 VGFDFKNVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAE 70
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G ++ +RAA + L A F K+VR K +E A GG
Sbjct: 71 GHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG------KGEEKA------------GGRT 112
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQ 203
+ P +LAD+ ES A+Y+D D K+ ++ P + L+E+ Q
Sbjct: 113 R-PALLADVFESFIGALYLDNGID--KVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQ 169
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
+ + V + + + + G N+ A V V+G + S K+ A+ +AA+ A
Sbjct: 170 RDRDVLIEYDILGETGPA-------HNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFA 222
Query: 264 LEKLAQ 269
+ +L
Sbjct: 223 INQLTH 228
>gi|46908036|ref|YP_014425.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47093844|ref|ZP_00231588.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|226224408|ref|YP_002758515.1| ribonuclease III [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254826153|ref|ZP_05231154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|254852713|ref|ZP_05242061.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|254933277|ref|ZP_05266636.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|300763882|ref|ZP_07073879.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|386732545|ref|YP_006206041.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281417|ref|YP_006682315.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404287234|ref|YP_006693820.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|405750156|ref|YP_006673622.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|405753031|ref|YP_006676496.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|405755965|ref|YP_006679429.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|406704588|ref|YP_006754942.1| ribonuclease III [Listeria monocytogenes L312]
gi|417317908|ref|ZP_12104509.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|424714681|ref|YP_007015396.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
gi|424823566|ref|ZP_18248579.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|73917580|sp|Q71YL2.1|RNC_LISMF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|259491903|sp|C1KWA4.1|RNC_LISMC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|46881306|gb|AAT04602.1| ribonuclease III [Listeria monocytogenes serotype 4b str. F2365]
gi|47017785|gb|EAL08574.1| ribonuclease III [Listeria monocytogenes str. 4b H7858]
gi|225876870|emb|CAS05579.1| Putative ribonuclease III [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|258606034|gb|EEW18642.1| ribonuclease III [Listeria monocytogenes FSL R2-503]
gi|293584837|gb|EFF96869.1| ribonuclease III [Listeria monocytogenes HPB2262]
gi|293595393|gb|EFG03154.1| ribonuclease III [Listeria monocytogenes FSL J1-194]
gi|300515618|gb|EFK42668.1| ribonuclease III [Listeria monocytogenes FSL N1-017]
gi|328473534|gb|EGF44371.1| ribonuclease III [Listeria monocytogenes J1-220]
gi|332312246|gb|EGJ25341.1| Ribonuclease 3 [Listeria monocytogenes str. Scott A]
gi|384391303|gb|AFH80373.1| ribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219356|emb|CBY70720.1| ribonuclease III [Listeria monocytogenes ATCC 19117]
gi|404222231|emb|CBY73594.1| ribonuclease III [Listeria monocytogenes SLCC2378]
gi|404225165|emb|CBY76527.1| ribonuclease III [Listeria monocytogenes SLCC2540]
gi|404228052|emb|CBY49457.1| ribonuclease III [Listeria monocytogenes SLCC2755]
gi|404246163|emb|CBY04388.1| ribonuclease III [Listeria monocytogenes serotype 7 str. SLCC2482]
gi|406361618|emb|CBY67891.1| ribonuclease III [Listeria monocytogenes L312]
gi|424013865|emb|CCO64405.1| Ribonuclease 3 [Listeria monocytogenes serotype 4b str. LL195]
Length = 229
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 47/246 (19%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+ ++FK+ LL++A THSSY + +RLEF+GDA L L +SNY+F YP +
Sbjct: 11 VGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPDMAE 70
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G ++ +RAA + L A F K+VR K +E A GG
Sbjct: 71 GHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG------KGEEKA------------GGRT 112
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQ 203
+ P +LAD+ ES A+Y+D D K+ ++ P + L+E+ Q
Sbjct: 113 R-PALLADVFESFIGALYLDNGID--KVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQ 169
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
+ + V + + + + G N+ A V V+G + S K+ A+ +AA+ A
Sbjct: 170 RDRDVLIEYDILGETGPA-------HNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFA 222
Query: 264 LEKLAQ 269
+ +L
Sbjct: 223 INQLTH 228
>gi|342872111|gb|EGU74508.1| hypothetical protein FOXB_14953 [Fusarium oxysporum Fo5176]
Length = 1500
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 124/266 (46%), Gaps = 41/266 (15%)
Query: 39 VENIINYNFKNKRLLEEALTHSS--YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
V Y FK+ +L++ A H S Y YQRLEF+GD+ L +A+ +Y++ +P+ DP
Sbjct: 1206 VAQATGYRFKSAQLVQSAFKHPSWPYESVPDYQRLEFLGDSLLDMAIVDYLYQNFPRADP 1265
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF------AEAVSQEDNTA 150
L+ + A +S + L + VK G ++ + S ++L +++++ AE + ++
Sbjct: 1266 QWLTEHKMAMVSNQFLECLCVKLGLHQHLLSSTSSLLSQIRDYVVELEVAEENAHKEAKE 1325
Query: 151 VYGGSIK---------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTL 198
V G ++ APKV AD++E++ A++VD + + F ++P + L
Sbjct: 1326 V-GTPMRKDFWLKVGSAPKVYADVIEALVGAMFVDSKYKFSVVENFFTKFIQPYFQDMRL 1384
Query: 199 EELQQQPQPVTLLFKLCQKNGKQVDIKHWR-----------------KNRKNIASVYVDG 241
+ PVT L K K ++ +WR K+ + A V
Sbjct: 1385 YDTFANKHPVTFLSK---KMHQEFGCTNWRISAEAVPCSADQGMAALKDTEMCAVFMVHQ 1441
Query: 242 SFVASASSEQKEIAKLNAAREALEKL 267
+A +SE +K AA +ALE L
Sbjct: 1442 KVIADDTSESGRYSKQRAATKALEIL 1467
>gi|420460167|ref|ZP_14958966.1| ribonuclease III [Helicobacter pylori Hp A-27]
gi|393077269|gb|EJB78018.1| ribonuclease III [Helicobacter pylori Hp A-27]
Length = 239
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 119/250 (47%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLRVSSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
AL+KL ++
Sbjct: 229 YYALQKLKEA 238
>gi|195996287|ref|XP_002108012.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens]
gi|190588788|gb|EDV28810.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens]
Length = 915
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 84/172 (48%), Gaps = 20/172 (11%)
Query: 44 NYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLR 103
+Y F N L A THSS S +YQRLE++GDA L L +V+ P PG++S +
Sbjct: 659 DYQFNNFYWLRIAFTHSSVA-SENYQRLEYLGDAILEYLLIEFVYCRKPYFGPGKISHFK 717
Query: 104 AANISTEKLARVAVKHGFYKFVR-HSAAALD--DKVKEFAEAV---SQEDNTAVYGGSI- 156
+ + + +A+ FY +R HS LD D ++ F E + Q+D+ G
Sbjct: 718 SVMTRNQTFSLIAIAFQFYTHIRCHSKLKLDIMDSIQNFKEILLDNHQDDHQPDIGHFAN 777
Query: 157 ------------KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV 196
K PKV AD+ E+ AAIY+D L+ +W + +++ I+
Sbjct: 778 LAYQLYTSNRYQKLPKVCADVFEAFIAAIYLDCGKKLRTVWKVVYKMVQRIL 829
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
+L +ALT S D +++RLE +GD+ L + F P + G +SL+RA N+S
Sbjct: 470 MLLQALTSLSADDFFNHERLEILGDSYLKFITTADYFFRNPNMKEGAMSLMRAINVSNSH 529
Query: 112 LARVAVKHG--FYKF 124
L+R + G Y+F
Sbjct: 530 LSRTSKLKGLTLYQF 544
>gi|389721526|ref|ZP_10188278.1| ribonuclease III [Acinetobacter sp. HA]
gi|388608822|gb|EIM38018.1| ribonuclease III [Acinetobacter sp. HA]
Length = 232
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 76/154 (49%), Gaps = 28/154 (18%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
I Y FK LL+ ALTH S + +Y+RLEF+GD+ LG+ ++NY+F AYP + G+L+ +
Sbjct: 17 IGYQFKQADLLKLALTHRSVSHKHNYERLEFLGDSLLGMIIANYLFTAYPHENEGRLTRM 76
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
RA + E L ++A + + S L G +L
Sbjct: 77 RATLVRQEALGKIANDLKLSQNLILSTGELK-------------------SGGHHRESIL 117
Query: 163 ADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV 196
AD VE+I AIYVD DL +LEPIV
Sbjct: 118 ADTVEAIIGAIYVDCG-DLT--------VLEPIV 142
>gi|410667365|ref|YP_006919736.1| ribonuclease 3 [Thermacetogenium phaeum DSM 12270]
gi|409105112|gb|AFV11237.1| ribonuclease 3 [Thermacetogenium phaeum DSM 12270]
Length = 235
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 42/244 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTS-----YQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
IN F RLLE ALTH SY + QRLEF+GDA LG ++ Y++ +P+ G
Sbjct: 12 INVFFSEPRLLETALTHPSYMVEHAEVEHHNQRLEFLGDAILGSVVAYYLYEHFPKFGEG 71
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157
L+ RAA + LA VA K K++R E+N+ G K
Sbjct: 72 HLTKTRAAVVCEPSLAAVARKLELGKYLRLGKG---------------EENS----GGRK 112
Query: 158 APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK---- 213
P +LAD E++ AA+++D ++ ++ GLL+ EE+++ VT +K
Sbjct: 113 RPSILADAFEALTAAVFLDQGWEATCDFLA--GLLK-----EEIEKNVHGVTRDYKTHLQ 165
Query: 214 -LCQKNGKQ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEK 266
L Q G + ++ ++K + V++ + + + K+ ++ NAAR ALE
Sbjct: 166 ELVQSKGNESPYYQILEESGPDHDKKFTSGVFLKDKLLGKGTGKSKKESEQNAARAALEY 225
Query: 267 LAQS 270
L ++
Sbjct: 226 LRKT 229
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K L EL K P Y+I ++ GP HDKKF S V + L G KS+ K++E
Sbjct: 161 KTHLQELVQSKGNESPYYQILEESGPDHDKKFTSGVFLKDK---LLGKGTGKSK-KESEQ 216
Query: 354 SAASMMLRALREST 367
+AA L LR+++
Sbjct: 217 NAARAALEYLRKTS 230
>gi|152989964|ref|YP_001355686.1| ribonuclease III [Nitratiruptor sp. SB155-2]
gi|189043328|sp|A6Q1H0.1|RNC_NITSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|151421825|dbj|BAF69329.1| ribonuclease III [Nitratiruptor sp. SB155-2]
Length = 226
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 79/137 (57%), Gaps = 19/137 (13%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQL 99
E + Y+F++K+LL+EALTH SY + +RLEF+GDA L L + Y+F +P+ + G+L
Sbjct: 8 EKKLGYSFEDKKLLKEALTHKSYKSPVNNERLEFLGDAVLDLVVGEYLFKKFPKANEGEL 67
Query: 100 SLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAP 159
S LRA+ ++ E A++A K K++ S A +E+N G K P
Sbjct: 68 SKLRASLVNEEGFAKLAQKLDIGKYIFISQA--------------EENNQ----GRTK-P 108
Query: 160 KVLADIVESIAAAIYVD 176
+L++ E++ AIY++
Sbjct: 109 SLLSNAFEAVMGAIYLE 125
>gi|385228416|ref|YP_005788349.1| ribonuclease III [Helicobacter pylori Puno120]
gi|344334854|gb|AEN15298.1| ribonuclease III [Helicobacter pylori Puno120]
Length = 238
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 119/250 (47%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 20 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 79
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + AL D + S E+ + G K
Sbjct: 80 LSKLRASIVSA---------HGFTKLAK--VIALQD----YLHVSSSEE---ISNGREK- 120
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 121 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 174
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 175 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKIYATAKGKSKKEAEQQCA 227
Query: 261 REALEKLAQS 270
AL+KL ++
Sbjct: 228 YYALQKLKEA 237
>gi|295100361|emb|CBK97906.1| RNAse III [Faecalibacterium prausnitzii L2-6]
Length = 224
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 117/247 (47%), Gaps = 49/247 (19%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST-----SYQRLEFIGDAALGLALSNYVFLAYPQ 93
+E II Y FK+ LLE ALTH+SY + T +RLEF+GD+ L + ++Y+F AY
Sbjct: 5 LETIIGYKFKHPELLETALTHTSYANETRPPVKHNERLEFLGDSVLQIVSADYLFHAYAD 64
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
G L+ +R++ +S L + A + ++R E++ G
Sbjct: 65 RPEGDLTRIRSSLVSEGALFQFAQEINLGDYLRLGRG---------------EEHC---G 106
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT------------LEEL 201
G + P V++D E++ AA+Y+D ++ K +++ P +T L+E+
Sbjct: 107 GRTR-PSVVSDAFEALIAALYLDGGMEVAKNFIL------PFITEGKHAEADYKTRLQEI 159
Query: 202 QQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
QQ L + + Q+ G N+ + +V + VA K++A+ +AAR
Sbjct: 160 VQQNPEEKLSYVVEQETGPD-------HNKHFVVAVRFNSDCVARGEGRSKKMAEQHAAR 212
Query: 262 EALEKLA 268
EAL+ L
Sbjct: 213 EALKLLG 219
>gi|221194650|ref|ZP_03567707.1| ribonuclease III [Atopobium rimae ATCC 49626]
gi|221185554|gb|EEE17944.1| ribonuclease III [Atopobium rimae ATCC 49626]
Length = 243
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 115/248 (46%), Gaps = 32/248 (12%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
E I N+ FK + L+E ALTH S + S SY+RLEF+GD+ LG ++ +F YP++D
Sbjct: 11 EKICNHVFKRRDLIEAALTHPSAVEDKPVSASYERLEFLGDSILGAIVATDLFERYPEMD 70
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
G+L+ L+ + +S L+ VA G + VS+ G
Sbjct: 71 EGELTRLKISLVSGHTLSLVAEALGIGPLI--------------ITGVSERGT-----GG 111
Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLC 215
L ++ ESI A+Y+D ++ ++I L P ++ ++ P + L +
Sbjct: 112 RGMRSALENVYESIVGALYLDAGYEPTHEFVIR--TLAPHISPALAERSVSPKSRLQEAV 169
Query: 216 QKNGKQ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA- 268
Q NGK V I+ V VDG V K+ A+ AA++AL +L
Sbjct: 170 QANGKSTPEYELVSESGPAHTPTFISVVSVDGCKVGRGQGHSKKAAEAAAAQDALVRLGV 229
Query: 269 QSMPVNCD 276
++PV+CD
Sbjct: 230 DAVPVDCD 237
>gi|147678073|ref|YP_001212288.1| ribonuclease III [Pelotomaculum thermopropionicum SI]
gi|189043329|sp|A5D1H6.1|RNC_PELTS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|146274170|dbj|BAF59919.1| dsRNA-specific ribonuclease [Pelotomaculum thermopropionicum SI]
Length = 241
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 119/250 (47%), Gaps = 34/250 (13%)
Query: 30 PEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLAL 83
P+ +D + ++N + ++++ LL ALTHSS+T + QRLEF+GDA L LA+
Sbjct: 2 PDAQDKLTLLKNRLGIAWRDEGLLTRALTHSSFTYENRQNGLENNQRLEFLGDAVLELAV 61
Query: 84 SNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV 143
S+Y++ + P++D G L+ LRA+ + LARVA + E +
Sbjct: 62 SDYLYRSKPEMDEGDLTKLRASVVCEPSLARVA------------------RELELGTCL 103
Query: 144 SQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV--TLEEL 201
GG + P +LAD E++ A+Y +D L+K + L P++ LE
Sbjct: 104 YMGKGEERSGGRDR-PSILADAFEALLGAVY--LDQGLEKAAGLAIKYLAPLIGDVLEGR 160
Query: 202 QQQPQPVTLLFKLCQKNGKQVDIKHWRK-----NRKNIASVYVDGSFVASASSEQKEIAK 256
++ L + Q+ G+QV ++ ++ A V G V + K+ A+
Sbjct: 161 LERDYKTELQELVQQRGGEQVQYVILKEEGPDHHKSFTAGVLYRGVLVGQGTGRSKKEAE 220
Query: 257 LNAAREALEK 266
AA++AL K
Sbjct: 221 QQAAKKALMK 230
>gi|109947401|ref|YP_664629.1| ribonuclease III [Helicobacter acinonychis str. Sheeba]
gi|122973320|sp|Q17XJ6.1|RNC_HELAH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|109714622|emb|CAJ99630.1| ribonuclease III (RNase III) [Helicobacter acinonychis str. Sheeba]
Length = 234
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 44/244 (18%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+K LLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 16 LEKALGYSFKDKHLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 75
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S + GF K R A +L D ++ VS + T+ +
Sbjct: 76 LSKLRASIVSAQ---------GFTKLAR--AISLQDYLR-----VSSSEETS---KGREK 116
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI--------------VTLEELQQQ 204
P +L+ E++ A +Y++ D K+ I + LL L+EL Q
Sbjct: 117 PSILSSAFEALMAGVYLEAGLD--KVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQA 174
Query: 205 PQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASV-YVDGSFVASASSEQKEIAKLNAAREA 263
V ++L ++ G + K V Y+ A+A + K+ A+ A +A
Sbjct: 175 QFCVIPTYQLLKEKGP--------AHHKEFEMVLYIQNQMYATAKGKSKKEAEQQCAYQA 226
Query: 264 LEKL 267
L+KL
Sbjct: 227 LQKL 230
>gi|163119429|ref|YP_078987.2| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319646025|ref|ZP_08000255.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
gi|404489084|ref|YP_006713190.1| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|81385589|sp|Q65JQ5.1|RNC_BACLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|52348075|gb|AAU40709.1| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|145902936|gb|AAU23349.2| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|317391775|gb|EFV72572.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
Length = 249
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYPQLDP 96
I+ F+N++LL +A THSSY + +RLEF+GDA L L +S +++ YP +
Sbjct: 27 ISVQFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLYAKYPAMSE 86
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAA + L +A H + F E V + GG
Sbjct: 87 GDLTKLRAAIVCEPSLVSLA----------HELS--------FGELVLLGKGEEMTGGR- 127
Query: 157 KAPKVLADIVESIAAAIYVDIDFD----LQKLWMI-------FRGLLEPIVTLEELQQQP 205
K P +LAD+ E+ A+Y+D + K ++ F +++ L+E Q+
Sbjct: 128 KRPALLADVFEAFIGALYLDQGLEAVVTFLKAYVFPKIDDGAFSHVMDFKSQLQEFVQRD 187
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
L +K+ Q+ G NR+ A+V + G + S K+ A+ +AA+EAL
Sbjct: 188 GRGILEYKILQEKGPA-------HNREFEANVSLKGEVLGVGSGRSKKEAEQHAAQEALA 240
Query: 266 KL 267
KL
Sbjct: 241 KL 242
>gi|423682137|ref|ZP_17656976.1| ribonuclease III [Bacillus licheniformis WX-02]
gi|383438911|gb|EID46686.1| ribonuclease III [Bacillus licheniformis WX-02]
Length = 253
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYPQLDP 96
I+ F+N++LL +A THSSY + +RLEF+GDA L L +S +++ YP +
Sbjct: 31 ISVQFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLYAKYPAMSE 90
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAA + L +A H + F E V + GG
Sbjct: 91 GDLTKLRAAIVCEPSLVSLA----------HELS--------FGELVLLGKGEEMTGGR- 131
Query: 157 KAPKVLADIVESIAAAIYVDIDFD----LQKLWMI-------FRGLLEPIVTLEELQQQP 205
K P +LAD+ E+ A+Y+D + K ++ F +++ L+E Q+
Sbjct: 132 KRPALLADVFEAFIGALYLDQGLEAVVTFLKAYVFPKIDDGAFSHVMDFKSQLQEFVQRD 191
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
L +K+ Q+ G NR+ A+V + G + S K+ A+ +AA+EAL
Sbjct: 192 GRGILEYKILQEKGPA-------HNREFEANVSLKGEVLGVGSGRSKKEAEQHAAQEALA 244
Query: 266 KL 267
KL
Sbjct: 245 KL 246
>gi|221135073|ref|ZP_03561376.1| ribonuclease III [Glaciecola sp. HTCC2999]
Length = 241
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 24/166 (14%)
Query: 28 PSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYV 87
P+ D ++ +I+Y F + LL++ALTH S +RLEF+GDA LG+ + ++
Sbjct: 13 PNTASIDPFVKLQRLIDYQFNDVSLLKQALTHKS-AHRQHNERLEFLGDAVLGMIVGEHL 71
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
F A+P G+L+ +R+A + + LA +A++ G +F++ A L
Sbjct: 72 FKAFPNSPEGKLTRMRSAIVKGDTLAEIALEKGLGEFIQLGAGELKS------------- 118
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDID----FDLQKLWMIFR 189
G + +LAD+VESI AIY+D +D W R
Sbjct: 119 ------GGKQRYSILADVVESIIGAIYLDAGMNQCYDFIHAWFGAR 158
>gi|387927066|ref|ZP_10129745.1| ribonuclease III [Bacillus methanolicus PB1]
gi|387589210|gb|EIJ81530.1| ribonuclease III [Bacillus methanolicus PB1]
Length = 253
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 43/250 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I F +++LL++A THSSY + +RLEF+GDA L L +S Y+F YP +
Sbjct: 27 IGIVFGDEKLLKQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTVSQYLFKKYPMMSE 86
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRAA + L A + F + + L K +E GG
Sbjct: 87 GELTKLRAAVVCEPSLVSFANELSFGELI------LLGKGEEMT------------GGRA 128
Query: 157 KAPKVLADIVESIAAAIYVD--IDFDLQKLWMI---------FRGLLEPIVTLEELQQQP 205
+ P +LAD+ E+ A+Y+D I+ + L M+ F +++ L+EL Q+
Sbjct: 129 R-PALLADVFEAFIGALYLDKGIETVTKFLEMVVFPKINAGAFSHVMDYKSQLQELVQRD 187
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
T+ +++ Q+ G NR+ ++ V ++ + + K+ A+ +AA+ ALE
Sbjct: 188 GAGTIEYRILQEKGPA-------HNREFVSRVSLNKVELGTGIGRSKKEAEQHAAQMALE 240
Query: 266 KLAQSMPVNC 275
KL + VN
Sbjct: 241 KLKAHLEVNS 250
>gi|167046030|gb|ABZ10546.1| dicer-like protein D [Placozoa sp. DMJ-2008]
Length = 351
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 84/172 (48%), Gaps = 20/172 (11%)
Query: 44 NYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLR 103
+Y F N L A THSS S +YQRLE++GDA L L +V+ P PG++S +
Sbjct: 181 DYQFNNFYWLRIAFTHSSVA-SENYQRLEYLGDATLEYLLIEFVYCRKPYFGPGKISHFK 239
Query: 104 AANISTEKLARVAVKHGFYKFVR-HSAAALD--DKVKEFAEAV---SQEDNTAVYGGSI- 156
+ + + +A+ FY +R HS LD D ++ F E + Q+D+ G
Sbjct: 240 SVMTRNQTFSLIAIAFQFYTHIRCHSKLKLDIMDSIQNFKEILLDNHQDDHQPDIGHFAN 299
Query: 157 ------------KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV 196
K PKV AD+ E+ AAIY+D L+ +W + +++ I+
Sbjct: 300 LAYQLYTSNRYQKLPKVCADVFEAFIAAIYLDCGKKLRTVWKVVYKMVQRIL 351
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 64 DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHG--F 121
D +++RLE +GD+ L + F P + G +SL+RA N+S L+R + G
Sbjct: 4 DFFNHERLEILGDSYLKFITTADYFFRNPNMKEGAMSLMRAINVSNSHLSRTSKLKGLTL 63
Query: 122 YKF 124
Y+F
Sbjct: 64 YQF 66
>gi|407977619|ref|ZP_11158456.1| ribonuclease III [Bacillus sp. HYC-10]
gi|407415872|gb|EKF37453.1| ribonuclease III [Bacillus sp. HYC-10]
Length = 247
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 111/237 (46%), Gaps = 33/237 (13%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I+ +FKN++LL +A THSSY + +RLEF+GDA L L +S ++F YP +
Sbjct: 25 ISVHFKNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSE 84
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAA + L +A + F V L K +E G
Sbjct: 85 GDLTKLRAAIVCEPSLVSLAHELSFGDLV------LLGKGEEMT-------------GGR 125
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
K P +LAD+ E+ A+Y+D L+ + + P + + L + Q
Sbjct: 126 KRPALLADVFEAFIGALYLDQ--GLEPVEQFLEAYVYPKINDGAFSHVMDFKSQLQEFVQ 183
Query: 217 KNGKQV---DIKHWR---KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
++GK V I H + NR+ A+V + G + + K+ A+ +AA+EAL KL
Sbjct: 184 RDGKGVLEYRILHEKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHAAQEALAKL 240
>gi|418966405|ref|ZP_13518146.1| ribonuclease III [Streptococcus constellatus subsp. constellatus
SK53]
gi|383340226|gb|EID18538.1| ribonuclease III [Streptococcus constellatus subsp. constellatus
SK53]
Length = 232
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 110/233 (47%), Gaps = 35/233 (15%)
Query: 47 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
F+N+RLLE A TH+SY + + +RLEF+GDA L L +S Y++ YP+ G LS
Sbjct: 16 FQNERLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGDLS 75
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
LR+ + E LA GF + D + +F + E+ + G
Sbjct: 76 KLRSTIVREESLA------GFSR---------DCQFDQFIKLGRGEEKS----GGRNRDT 116
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGK 220
+L D+ E+ A+ +D D + K ++ ++ P V + + +Q T L +L Q NG
Sbjct: 117 ILGDLFEAFLGALLLDKDVEAVKKFLY--QIMIPKVEVGDFEQVIDYKTKLQELLQVNG- 173
Query: 221 QVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAAREALEK 266
VDI + + A SV VDG V K++A+ AA+ A EK
Sbjct: 174 DVDIVYQVISESGPAHAKEFDVSVSVDGRVVGQGQGRSKKLAEQEAAKNAFEK 226
>gi|384172905|ref|YP_005554282.1| ribonuclease III [Arcobacter sp. L]
gi|345472515|dbj|BAK73965.1| ribonuclease III [Arcobacter sp. L]
Length = 224
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 81/147 (55%), Gaps = 23/147 (15%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E ++Y FKNK L+ EALTH SY + +RLEF+GDA L L + Y++L +P+ + G+
Sbjct: 7 LEKCLDYQFKNKNLIIEALTHKSYKKPYNNERLEFLGDAVLNLIVGEYLYLKFPKSNEGE 66
Query: 99 LSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
LS +RA+ ++ R+A +K G Y F+ + ++E N G
Sbjct: 67 LSKIRASLVNETGFTRLANEIKLGDYIFI----------------STAEERNK----GRT 106
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQK 183
KA +L+D E+I A+Y++ D+ K
Sbjct: 107 KAS-ILSDAFEAIMGAVYLESGLDVLK 132
>gi|365157110|ref|ZP_09353391.1| ribonuclease 3 [Bacillus smithii 7_3_47FAA]
gi|363625844|gb|EHL76855.1| ribonuclease 3 [Bacillus smithii 7_3_47FAA]
Length = 243
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 116/245 (47%), Gaps = 43/245 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+ +F ++ LL +A THSSY + + +RLEF+GDA L L +SNY+F YP +
Sbjct: 23 LEIDFHDQSLLMQAFTHSSYVNEHRKKPNDDNERLEFLGDAVLELTVSNYLFNKYPFMSE 82
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRAA + L + + F +++R + GG
Sbjct: 83 GELTKLRAAVVCEPSLVGFSNELQFGQYIRLGKG------------------EELTGGRT 124
Query: 157 KAPKVLADIVESIAAAIYVDIDFD-----LQKLWM------IFRGLLEPIVTLEELQQQP 205
+ P +LAD+ E+ A+Y+D + L+K+ F +++ L+E+ Q+
Sbjct: 125 R-PALLADVFEAFIGALYLDQGLEVVVQFLEKIVFPKIDAGAFSHVMDFKTQLQEMVQRD 183
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
L +++ Q+ G +R+ ++ V ++G + + K+ A+ AA +AL
Sbjct: 184 GNGILTYRILQEKGPA-------HHREFVSEVALNGQVLGVGTGRSKKEAEQRAAEQALS 236
Query: 266 KLAQS 270
KL Q+
Sbjct: 237 KLKQN 241
>gi|393238576|gb|EJD46112.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 1427
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 9/174 (5%)
Query: 17 RLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSY--TDSTSYQRLEFI 74
+L E + +PSP + ++ + + F N+ LL EA+TH S +++ SY+RLEF+
Sbjct: 1092 KLWTERYVKPVPSPLRRPLLHELQQRLGHEFANETLLLEAVTHRSMQSSETPSYERLEFL 1151
Query: 75 GDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLA-----RVAVKHGFYKFVRHSA 129
GDA L +A+ Y+F YPQ GQLS R + LA R+ V + A
Sbjct: 1152 GDALLDMAVMQYLFKKYPQATCGQLSWARQRAVCNSTLAWIAATRLHVHECLLQNHIELA 1211
Query: 130 AALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQK 183
+D +E E +++ G + PK D+VE++ AA+++D+ D ++
Sbjct: 1212 KVIDAARQELIEMSAEQ--VIRDGWKMDMPKPPGDLVEAVFAAMFIDMGHDYER 1263
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 69 QRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKL 112
QRLE +GDA L L +S Y F A+P GQL+ +R +IS + L
Sbjct: 974 QRLETLGDAFLKLGVSVYAFHAFPFKHEGQLTNVRIPSISNKSL 1017
>gi|419683175|ref|ZP_14211884.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1213]
gi|380659791|gb|EIB75756.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1213]
Length = 224
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 119/248 (47%), Gaps = 50/248 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G
Sbjct: 7 LEQSLTYEFKDKNLLMHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ S V++E+N G +
Sbjct: 67 LSKLRAALVNEKSFAKIANSLNLGDFIFMS--------------VAEENN-----GGKEK 107
Query: 159 PKVLADIVESIAAAIYVDIDFDLQK---LWMI---------------FRGLLEPIVTLEE 200
P +L+D +E+I AI+++ F+ K L +I ++ L+ I T E
Sbjct: 108 PSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEI-TQGE 166
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
+ Q PQ T+ + KQ +I ++ +DG +A A + K+ A+ AA
Sbjct: 167 IGQTPQYETVR-AFGPDHLKQFEI-----------ALMLDGKELARAIAGSKKEAQQMAA 214
Query: 261 REALEKLA 268
+ ALEKL
Sbjct: 215 KIALEKLG 222
>gi|374708678|ref|ZP_09713112.1| ribonuclease III [Sporolactobacillus inulinus CASD]
Length = 242
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 117/246 (47%), Gaps = 47/246 (19%)
Query: 43 INYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+++F+N+ LL++A THSSY + Y+RLEF+GDA L L +S ++F YP+L
Sbjct: 25 FSFSFQNETLLKQAFTHSSYVNEHRRESQDDYERLEFLGDAVLELLISQHLFKNYPELSE 84
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G ++ LRAA + + G ++F A++L F E + V GG
Sbjct: 85 GDMTKLRAA---------IVCETGLFQF----ASSLS-----FEEMIFLGRGEEVTGGR- 125
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-------------LEELQQ 203
K P +LAD+ E+ A+Y+D LQ++ ++ P ++ L+E Q
Sbjct: 126 KRPSLLADVFEAFVGALYLDQ--GLQEVERFLEKVVYPRISDGSFSHVMDYKSQLQETVQ 183
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
+ L ++L + G +R+ + V ++ + K+ ++ +AA +A
Sbjct: 184 RKNLGELDYELISEKGPA-------HHREFTSHVLLNSEVIGKGKGHSKKDSEQSAASKA 236
Query: 264 LEKLAQ 269
L LA+
Sbjct: 237 LRNLAE 242
>gi|422416325|ref|ZP_16493282.1| ribonuclease III [Listeria innocua FSL J1-023]
gi|313623280|gb|EFR93523.1| ribonuclease III [Listeria innocua FSL J1-023]
Length = 229
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 113/246 (45%), Gaps = 47/246 (19%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+ ++F+N LL++A THSSY + +RLEF+GDA L L +S+Y+F YP +
Sbjct: 11 VGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAE 70
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G ++ +RAA + L A F K+VR K +E A GG
Sbjct: 71 GHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG------KGEEKA------------GGRT 112
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQ 203
+ P +LAD+ ES A+Y+D D K+ ++ P + L+E+ Q
Sbjct: 113 R-PALLADVFESFIGALYLDNGID--KVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQ 169
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
+ + V + + + + G N+ A V V+G + S K+ A+ +AA+ A
Sbjct: 170 RDRDVLIEYDILGETGPA-------HNKSFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFA 222
Query: 264 LEKLAQ 269
+ +L
Sbjct: 223 INQLTH 228
>gi|195023643|ref|XP_001985724.1| GH20958 [Drosophila grimshawi]
gi|193901724|gb|EDW00591.1| GH20958 [Drosophila grimshawi]
Length = 1713
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 58/243 (23%)
Query: 9 PRATVTDYRLLKEAMLTSLPSPEMEDAVFY---VENIINYNFKNKRLLEEALTHSSYTD- 64
P + D +L + T++ E+++ + +E+ + Y F+++ L +ALTH S
Sbjct: 1393 PLTQLLDLQLGSTQLRTNITKREVDEFLINHSALEHNLGYTFRDRAYLLQALTHPSNPTN 1452
Query: 65 --STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFY 122
+ YQ LEF+GDA L +S Y+F ++ PGQL+ LR+A ++ LA + V+H +
Sbjct: 1453 RLTGCYQELEFVGDAILDFLISAYIFEHKTRMTPGQLTDLRSALVNNTTLACICVRHRIH 1512
Query: 123 KFVRHSAAALDDKVKEF-------------------------------------AEAVSQ 145
F+ A L D ++ F AEA Q
Sbjct: 1513 FFILAENAMLSDSIQNFVRFQETQNHRVTNQVRILMEESDLMPGPLDSDDELEMAEADEQ 1572
Query: 146 EDNTAVYGGSIK--------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGL 191
+ + K PK L D++E++ AAIY+D DL W + L
Sbjct: 1573 QASQPAITADTKKPEVGEYNISTNVDVPKTLGDVLEALIAAIYLDCR-DLNTTWQVVYKL 1631
Query: 192 LEP 194
EP
Sbjct: 1632 FEP 1634
>gi|238854774|ref|ZP_04645104.1| ribonuclease III [Lactobacillus jensenii 269-3]
gi|260664006|ref|ZP_05864859.1| ribonuclease III [Lactobacillus jensenii SJ-7A-US]
gi|238832564|gb|EEQ24871.1| ribonuclease III [Lactobacillus jensenii 269-3]
gi|260561892|gb|EEX27861.1| ribonuclease III [Lactobacillus jensenii SJ-7A-US]
Length = 230
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 113/232 (48%), Gaps = 35/232 (15%)
Query: 47 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
FKN+ LLEEA THSSY + +Y++LEF+GDA L LA+S+Y++ +P L+ GQL+
Sbjct: 18 FKNETLLEEAFTHSSYVNEHPKESVGNYEKLEFLGDAVLELAVSDYLYRHFPSLNEGQLT 77
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
LR+ + TE + A++ GF + E+ T G+ +
Sbjct: 78 RLRSNIVRTEGFSGFAIECGFPAEINLGHG---------------EEKT----GARERKT 118
Query: 161 VLADIVESIAAAIYVDIDFD-LQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNG 219
+L D+ E+ A+++D D +QK + + P++ E T L +L Q NG
Sbjct: 119 LLEDVFEAFNGALFLDQGMDAVQKFLKL---TVYPLIDSGEFTDSRDYKTDLQELLQVNG 175
Query: 220 KQVDIKHWRKNRKNIASVY-----VDGSFVASASSEQKEIAKLNAAREALEK 266
+ I++ + S + V+G ++ S K+ A+ AA+ AL K
Sbjct: 176 -AIKIEYQVLEESKLPSNFKVALLVEGKKISEGSGHNKKAAEQVAAKLALIK 226
>gi|321451362|gb|EFX63042.1| hypothetical protein DAPPUDRAFT_336024 [Daphnia pulex]
Length = 270
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 10/171 (5%)
Query: 35 AVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQL 94
AV E I+NY+F +K +L EALT+ + S +YQRLE IGDAA G + F
Sbjct: 99 AVKAFEEILNYSFNDKEVLLEALTYGNSIRSLNYQRLEVIGDAAFGFLAALNFFKQSLYH 158
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED------- 147
G +S LR+A + + +A K F+ ++++ L +++F E E+
Sbjct: 159 SAGDISQLRSACVCNDTFGMLAAKRNFHAYIQNLPPNLVKHLEDFLEFAESENFAPFDRE 218
Query: 148 ---NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195
N + + P LAD+ E++A A+ D + + L +F + +
Sbjct: 219 LAENEEIIATQVAIPTFLADVFEAVAGAVITDSNLSFETLEKVFVPFMNSV 269
>gi|444841769|gb|AGE12617.1| Dicer 2 [Nilaparvata lugens]
Length = 1448
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 66/107 (61%), Gaps = 3/107 (2%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDST---SYQRLEFIGDAALGLALSNYVFLAYPQL 94
Y+E +INY FKN+ L +AL+H +Y + +YQRLEF+GDA L ++ +++ L
Sbjct: 1266 YLEKLINYKFKNRAFLLQALSHPTYQPNNITPTYQRLEFLGDAILDFLVTTHMYEYCDNL 1325
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE 141
PG+L+ LR+A ++ LA +AV+ G +KF+ + L ++ F E
Sbjct: 1326 TPGELTDLRSALVNNVTLASIAVRIGLHKFLLLRSCQLSKVIEAFVE 1372
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
+ LT +S D + +RLE +GD+ L A+S +F+ +P+L GQL++++ I L
Sbjct: 1040 QVLTAASAHDIFNLERLETLGDSFLKYAVSLLLFIRFPELSEGQLTMIKGKVIGNRNLFY 1099
Query: 115 VAVKHGFYKFVR 126
+ G ++
Sbjct: 1100 CGEQKGLGSIIK 1111
>gi|408393408|gb|EKJ72672.1| hypothetical protein FPSE_07072 [Fusarium pseudograminearum CS3096]
Length = 1510
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 20/210 (9%)
Query: 28 PSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS---YQRLEFIGDAALGLALS 84
P+ V V + I Y+FK+ LL+ A TH SYT S + YQRLEF+GDA + + +
Sbjct: 1203 PNANQRRLVQKVADAIGYHFKSAPLLQSAFTHPSYTYSGNVPNYQRLEFLGDALIDMTIV 1262
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF----- 139
Y++ +P DP L+ + A S + L + VK + + + + K++++
Sbjct: 1263 EYLYRNFPLADPQWLTEHKMAMASNQFLGCLCVKLNLHHHLLFNTSQFISKIRDYVAELE 1322
Query: 140 -----AEAVSQEDNTAV----YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRG 190
A ++ED T + + + PK AD +E++ A++VD +FD + F
Sbjct: 1323 LAEETARQEAKEDGTPMRMDFWLNATTPPKAYADSIEALIGAMFVDSEFDYSVVEDFFTK 1382
Query: 191 LLEPI---VTLEELQQQPQPVTLLFKLCQK 217
+ P ++L + P T L K Q+
Sbjct: 1383 FIFPYFEDMSLYDTFANKHPYTFLTKKMQQ 1412
>gi|408356893|ref|YP_006845424.1| ribonuclease III [Amphibacillus xylanus NBRC 15112]
gi|407727664|dbj|BAM47662.1| ribonuclease III [Amphibacillus xylanus NBRC 15112]
Length = 229
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 114/250 (45%), Gaps = 43/250 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLALSNYVFLAYP 92
+E + FKN++LL +A THSSY + +RLEF+GDA L L +S Y++ YP
Sbjct: 6 LEKKLGITFKNQKLLIQAFTHSSYVNENRNKIQQDNERLEFLGDAVLELGISQYLYRTYP 65
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
G+L+ LRA + L + ALD K ++ E+ T
Sbjct: 66 NKPEGELTKLRATIVCEPALVKF---------------ALDLKFDQYVLLGKGEERT--- 107
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWM--IFRGLLEPIV----TLEEL 201
G K P +LAD+ E+ A+Y+D DF+ L K I G + + L+EL
Sbjct: 108 -GGRKRPALLADVFEAFIGALYLDQDFNAVVNFLHKYIYPKIKNGFMIKEIDYKSQLQEL 166
Query: 202 QQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
QQ + + +++ + G D R+ IA V ++ V K+ ++ AA+
Sbjct: 167 IQQDKQGEINYEIISEKGPAHD-------REFIAQVKINNKVVGIGHGRTKKESEQRAAK 219
Query: 262 EALEKLAQSM 271
AL+K S+
Sbjct: 220 IALDKHQTSI 229
>gi|392585234|gb|EIW74574.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 1534
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 105/208 (50%), Gaps = 47/208 (22%)
Query: 28 PSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSY-TD--STSYQRLEFIGDAALGLALS 84
PS E V +V+N+I Y F LL EALTH+S+ TD + SY+RLEF+GDA L + ++
Sbjct: 1204 PSLEAPPQVAHVQNMIGYTFTKPLLLVEALTHASHQTDLRTVSYERLEFLGDAVLDMLIA 1263
Query: 85 NYVFLAYPQLDPGQLSLLRAA----------------NISTEKLARVAVKHG-------- 120
+Y++ PG+++L + A + A ++HG
Sbjct: 1264 DYLYKHPKNFSPGEITLRKHAIGNALFLSYACLSSCTPVDASVPAPDPLRHGKITLRAKT 1323
Query: 121 ----FYKFVRHSAAAL-DDKVKEFAEAVS-------QEDNTAVYGGS----IKAPKVLAD 164
Y+ + HS++AL D++ FA S +++V+ + ++APK+L+D
Sbjct: 1324 EHIYLYQCMLHSSSALLDEQKGAFARFASVGGPLARSLSHSSVFPWAELTRLQAPKILSD 1383
Query: 165 IVESIAAAIYVDIDFDLQKLWMIFRGLL 192
IVES+ A+Y+D D+ + RG+L
Sbjct: 1384 IVESVIGAVYIDARGDV----VAVRGVL 1407
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 8/138 (5%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L++ A++ + T+YQRLE +GDA L L + Y++ +P G L+ R +S +
Sbjct: 1037 LVKMAISAPVSQEPTNYQRLESLGDAVLKLVVGAYLYSEHPLWHEGYLTQRRDHAVSNVR 1096
Query: 112 LARVAVKHGFYKFV--------RHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLA 163
LA+ A++ Y+++ R L D E + ++N G + KVLA
Sbjct: 1097 LAKSAIQKKLYRWIVRDHFAPKRFMPRYLTDNRGATNEEENSDENGNGKGKEDLSTKVLA 1156
Query: 164 DIVESIAAAIYVDIDFDL 181
D+VES+ A YV F+L
Sbjct: 1157 DVVESLIGAAYVHGGFEL 1174
>gi|358383044|gb|EHK20713.1| hypothetical protein TRIVIDRAFT_171147, partial [Trichoderma virens
Gv29-8]
Length = 1373
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 36/229 (15%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
V I Y F+ L A H SY T+ YQ+LEF+GD L +A+ +++F +P+ D
Sbjct: 1077 VAEITGYRFQCAPLARSAFRHPSYVFETNIPDYQQLEFLGDGLLDMAVVDFLFKRFPEAD 1136
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTA----- 150
P L+ + A +S + L + VK G +K + + +AL + +A + Q + A
Sbjct: 1137 PKWLTEHKTAMVSNQFLGCLCVKLGLHKHILLATSALLGDIGRYATQLEQAEEIARQKSQ 1196
Query: 151 ------VYGGSIKA----------------PKVLADIVESIAAAIYVDIDFDLQKLWMIF 188
GG +A PK LAD+VE++ A++VD + + F
Sbjct: 1197 GGDLGYTSGGCFQAGAQPTPQDFWIEVPQPPKALADVVEALVGAMFVDSGYSFSVVLNFF 1256
Query: 189 RGLLEPI---VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNI 234
++P + L PVT L Q + WR + N+
Sbjct: 1257 TKFIQPFFEDMALYSSFASNHPVTALAHRLQTD---FCCTQWRLHVANV 1302
>gi|389573284|ref|ZP_10163359.1| ribonuclease III [Bacillus sp. M 2-6]
gi|388426981|gb|EIL84791.1| ribonuclease III [Bacillus sp. M 2-6]
Length = 247
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 111/237 (46%), Gaps = 33/237 (13%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I+ +FKN++LL +A THSSY + +RLEF+GDA L L +S ++F YP +
Sbjct: 25 ISVHFKNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSE 84
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAA + L +A + F V L K +E G
Sbjct: 85 GDLTKLRAAIVCEPSLVSLAHELSFGDLV------LLGKGEEMT-------------GGR 125
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
K P +LAD+ E+ A+Y+D L+ + + P + + L + Q
Sbjct: 126 KRPALLADVFEAFIGALYLDQ--GLEPVERFLEAYVYPKINDGAFSHVMDFKSQLQEFVQ 183
Query: 217 KNGKQV---DIKHWR---KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
++GK V I H + NR+ A+V + G + + K+ A+ +AA+EAL KL
Sbjct: 184 RDGKGVLEYRILHEKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHAAQEALAKL 240
>gi|319957798|ref|YP_004169061.1| RNAse iii [Nitratifractor salsuginis DSM 16511]
gi|319420202|gb|ADV47312.1| RNAse III [Nitratifractor salsuginis DSM 16511]
Length = 226
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 115/243 (47%), Gaps = 42/243 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FKN +L+ EALTH SY + +RLEF+GDA L L + ++F +PQ D G
Sbjct: 7 LERRLGYEFKNPQLIVEALTHKSYKKPYNNERLEFLGDAVLDLIVGEFLFHKFPQSDEGV 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS +RA+ ++ A +A +++ S A +E+N G K
Sbjct: 67 LSKIRASLVNESGFATLARAIDLGRYIYLSPA--------------EENNQ----GRSK- 107
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI-------------VTLEELQQQP 205
P +L++ E++ AIY++ + + ++ R L E L+EL Q
Sbjct: 108 PSLLSNAFEAVIGAIYLEAGLENAR-SIVVRLLDETYPRIDLDTLCKDYKTALQELTQAT 166
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNI-ASVYVDGSFVASASSEQKEIAKLNAAREAL 264
VT +++ +G +RK +V +DG +ASA K+ A+ AA AL
Sbjct: 167 HGVTPDYEMIGSSGPD--------HRKEFEVAVKLDGETIASAKGRSKKAAQQKAAEIAL 218
Query: 265 EKL 267
+KL
Sbjct: 219 QKL 221
>gi|424780882|ref|ZP_18207749.1| Ribonuclease III [Catellicoccus marimammalium M35/04/3]
gi|422842583|gb|EKU27034.1| Ribonuclease III [Catellicoccus marimammalium M35/04/3]
Length = 231
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 119/259 (45%), Gaps = 57/259 (22%)
Query: 32 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLALSN 85
ME +++ FKN+RLL+EA THSSY + +RLE++GDA L L +S
Sbjct: 1 MESLKRLLQDQYQIQFKNERLLKEAFTHSSYANEHREEQLPCNERLEYLGDAVLELLVST 60
Query: 86 YVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ 145
Y+F YP+L G+L+ RAA + + LA FA+ V
Sbjct: 61 YLFKEYPELPEGKLTRFRAAIVKEDSLAY------------------------FAKEVHF 96
Query: 146 EDNTAVYGGSIKA-----PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV---- 196
+++ + G KA P +L D+ E+ A+Y+D L+K+ ++ P V
Sbjct: 97 DEHIFLGKGEEKANGRQRPALLCDLFEAFLGALYLDQ--GLEKVQAFLDQVMFPKVKSGT 154
Query: 197 ---------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASA 247
L+EL Q+ V + ++L + G NR +VY DG+ ++
Sbjct: 155 FTSAVDYKTKLQELLQKQGEVKIQYQLVAEEGPA-------HNRSFKMAVYCDGNLLSVG 207
Query: 248 SSEQKEIAKLNAAREALEK 266
+ K+ A+ AA++A+++
Sbjct: 208 TGRSKKQAEQIAAQKAIQE 226
Score = 37.7 bits (86), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K KL EL K+ K Y++ +EGP+H++ F AV DG L G +S+ K AE
Sbjct: 162 KTKLQELLQKQGEVKIQYQLVAEEGPAHNRSFKMAV---YCDGNLLSVGTGRSK-KQAEQ 217
Query: 354 SAASMMLRALRE 365
AA ++ +E
Sbjct: 218 IAAQKAIQEWQE 229
>gi|332878384|ref|ZP_08446107.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332683649|gb|EGJ56523.1| ribonuclease III [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 262
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 125/272 (45%), Gaps = 37/272 (13%)
Query: 19 LKEAMLTSLPSPEMEDAVFY--VENIINYNFKNKRLLEEALTHSSY----TDSTSYQRLE 72
LK+ + S + + +D +FY +++++ Y KN EA TH SY SY+RLE
Sbjct: 14 LKKILSFSRFTSKKKDGIFYNKMKDLLGYAPKNLSFYSEAFTHPSYQYQKATRKSYERLE 73
Query: 73 FIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAAL 132
F+GDA LG +++Y+F P+ D G L+ +R+ + L ++ + F+R
Sbjct: 74 FLGDAILGAVIADYIFTNAPEQDEGYLTKMRSKIVERRNLNQLGEELQLLSFLRTKLTP- 132
Query: 133 DDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
K+ ++ ++ E++ AIY+D + I R L+
Sbjct: 133 ----KQLGNNIT------------------GNLFEALIGAIYLDKGYKTC-FKFIERKLI 169
Query: 193 EPIVTLEELQQQP-QPVTLLFKLCQKNGKQV------DIKHWRKNRKNIASVYVDGSFVA 245
P + ++ L+++ +LL + CQK+ + D++ + + +A VYV+G V
Sbjct: 170 LPYINIKNLEEKVISHKSLLIEWCQKHKRDFSFEAEEDVEDRSETKYFVAKVYVEGFSVT 229
Query: 246 SASSEQKEIAKLNAAREALEKLAQSMPVNCDV 277
A + K+ A+ +AA+ K+ DV
Sbjct: 230 RARATSKKRAEESAAKRTCYKIQGKQHYKLDV 261
>gi|167046028|gb|ABZ10545.1| dicer-like protein D [Trichoplax adhaerens]
Length = 351
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 84/172 (48%), Gaps = 20/172 (11%)
Query: 44 NYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLR 103
+Y F N L A THSS S +YQRLE++GDA L L +V+ P PG++S +
Sbjct: 181 DYQFNNFYWLRIAFTHSS-VASENYQRLEYLGDAILEYLLIEFVYCRKPYFGPGKISHFK 239
Query: 104 AANISTEKLARVAVKHGFYKFVR-HSAAALD--DKVKEFAEAV---SQEDNTAVYGGSI- 156
+ + + +A+ FY +R HS LD D ++ F E + Q+D+ G
Sbjct: 240 SVMTRNQTFSLIAIAFQFYTHIRCHSKLKLDIMDSIQNFKEILLDNHQDDHQPDIGHFAN 299
Query: 157 ------------KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV 196
K PKV AD+ E+ AAIY+D L+ +W + +++ I+
Sbjct: 300 LAYQLYTSNRYQKLPKVCADVFEAFIAAIYLDCGKKLRTVWKVVYKMVQRIL 351
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 64 DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHG--F 121
D +++RLE +GD+ L + F P + G +SL+RA N+S L+R + G
Sbjct: 4 DFFNHERLEILGDSYLKFITTADYFFRNPNMKEGAMSLMRAINVSNSHLSRTSKLKGLTL 63
Query: 122 YKF 124
Y+F
Sbjct: 64 YQF 66
>gi|375088734|ref|ZP_09735072.1| ribonuclease III [Dolosigranulum pigrum ATCC 51524]
gi|374561699|gb|EHR33038.1| ribonuclease III [Dolosigranulum pigrum ATCC 51524]
Length = 232
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 118/256 (46%), Gaps = 56/256 (21%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDSTSY---------QRLEFIGDAALGLALSNYVF 88
++++ N F + R+L EA TH+SY + + +RLEF+GDA + L +S+Y+F
Sbjct: 7 HIKDNFNIVFNDDRILIEAFTHASYANDHRHLVDEPIKNLERLEFLGDAVIELFVSDYLF 66
Query: 89 LAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN 148
+ +L GQL+ LRA+ + E LA +A + +F+R ++K+
Sbjct: 67 NQFKELPEGQLTRLRASIVRAESLAELATECQLAQFIRLGKG--EEKM------------ 112
Query: 149 TAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT----------- 197
G + P +L D+ E+ AIY D Q + + R L + + +
Sbjct: 113 -----GGRQRPALLCDVFEAFVGAIYQD-----QGVESVRRFLRQVMFSKVEQNSFSYDT 162
Query: 198 -----LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQK 252
L+E QQ V + + + + +G D R+ V ++G + + K
Sbjct: 163 DYKTALQEFMQQSGVVNIEYTVLETSGPDHD-------REFTVEVSIEGDYHGVGMGKSK 215
Query: 253 EIAKLNAAREALEKLA 268
++A+ AA++ALE L+
Sbjct: 216 KLAEQKAAKQALEALS 231
>gi|238923872|ref|YP_002937388.1| ribonuclease III [Eubacterium rectale ATCC 33656]
gi|238875547|gb|ACR75254.1| ribonuclease III [Eubacterium rectale ATCC 33656]
Length = 237
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 105/223 (47%), Gaps = 36/223 (16%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I Y FKN+ LLE+ALTHSSY + + +RLEF+GDA L + S ++F+ YPQ
Sbjct: 21 IGYTFKNRHLLEQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSEFLFINYPQKPE 80
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRA+ + LA K++R ED+T G
Sbjct: 81 GELTKLRASIVCEPTLALCTKPLDLGKYLRLGRG---------------EDHT----GGR 121
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-LEELQQQPQPVTLLFKLC 215
K +L+D +E++ AIY+D F K ++ L I+T +E Q T+L +L
Sbjct: 122 KRKSILSDALEAVIGAIYLDGGFTNAKEFV-----LRFIMTDIENKQLFYDSKTILQELI 176
Query: 216 QKNGKQ-----VDIKHWRKNRKNIASVYVDGSFVASASSEQKE 253
Q +Q +D +++ +V VDG V+ K+
Sbjct: 177 QGRHEQLSYELIDESGPDHDKQFTVAVLVDGERVSEGEGHTKK 219
>gi|241061224|ref|XP_002408099.1| dicer-1, putative [Ixodes scapularis]
gi|215492368|gb|EEC02009.1| dicer-1, putative [Ixodes scapularis]
Length = 1348
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 96/227 (42%), Gaps = 58/227 (25%)
Query: 20 KEAMLTSLPSPE---------MEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STS 67
+ A+L +P PE M D V VE + Y F ++ L +A+TH+SY +
Sbjct: 1041 QTALLRHVPHPEEDLAALMELMADTVADVERALGYTFVDRSFLLQAVTHASYYRNRLTDC 1100
Query: 68 YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRH 127
YQRLEF+GDA + ++ Y++ + +PGQL+ LR++ ++ A + VK+G + +H
Sbjct: 1101 YQRLEFLGDAVIDYLVTRYLYELPRKFNPGQLTDLRSSLVNNTFFASLVVKYGLHGCFKH 1160
Query: 128 SAAALDDKVKEFAEAVSQ--------------------------------EDNT------ 149
+L + F +Q ED+T
Sbjct: 1161 CNPSLFSAIGRFVNYQAQAREEEREEGELPDEDREERQEFPDLNAPLDGAEDDTYWKVLE 1220
Query: 150 --------AVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIF 188
++ PK L D+ ES+ A+++D L ++W I
Sbjct: 1221 RHYCHEEECQEPEEVEVPKALGDLFESLMGAVFLDCGMSLDRVWRII 1267
>gi|152993835|ref|YP_001359556.1| ribonuclease III [Sulfurovum sp. NBC37-1]
gi|189043369|sp|A6QCJ0.1|RNC_SULNB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|151425696|dbj|BAF73199.1| ribonuclease III [Sulfurovum sp. NBC37-1]
Length = 223
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 112/243 (46%), Gaps = 42/243 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E +NY FK+K+L+ EALTH SY + +RLEF+GDA L L + Y+F +P+ D G
Sbjct: 7 LEKRLNYTFKDKQLIIEALTHKSYKKPYNNERLEFLGDAVLDLIVGEYLFKKFPKSDEGI 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS +RA+ ++ +A K ++ S A +E+N
Sbjct: 67 LSKIRASLVNESGFTLLARKIDLGSYIYLSLA--------------EENNNGR-----DK 107
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI--------------VTLEELQQQ 204
P +L++ E+I A+Y++ D K I LLE L+EL Q
Sbjct: 108 PSLLSNAFEAIIGAVYLEAGLDTAKEISI--KLLEECHPKIDLQSLSKDYKTALQELTQA 165
Query: 205 PQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 264
VT +++ +G K IA V +D +A+A + K+ A+ AA+ AL
Sbjct: 166 THAVTPGYEMLGSSGPD------HKKEFEIA-VTLDNKTIATAKGKSKKDAQQKAAKIAL 218
Query: 265 EKL 267
E L
Sbjct: 219 EAL 221
>gi|50085655|ref|YP_047165.1| ribonuclease III [Acinetobacter sp. ADP1]
gi|81392620|sp|Q6F9C2.1|RNC_ACIAD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|49531631|emb|CAG69343.1| ribonuclease III, ds RNA [Acinetobacter sp. ADP1]
Length = 230
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 27/238 (11%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+++ I Y FK LL+ ALTH S + +Y+RLEF+GD+ LG+ ++NY++ AYP + G+
Sbjct: 13 LQSRIGYEFKQLELLQLALTHRSVSHKYNYERLEFLGDSLLGMIIANYLYQAYPHENEGR 72
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
L+ +RA + E L ++A + + S L G
Sbjct: 73 LTRMRATLVRQEALGKIANDLKLSRCLILSTGELKS-------------------GGHHR 113
Query: 159 PKVLADIVESIAAAIYVDI-DFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQK 217
+LAD VE+I AIYVD D +L K ++ + + + +E Q P + L + Q
Sbjct: 114 ESILADTVEAIIGAIYVDSNDLNLLK-NIVLKWYIPYLDHIEPTDQLKDPKSRLQEYLQA 172
Query: 218 NGKQ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
K VDI+ N+ V+G + A+ AA E L+ L Q
Sbjct: 173 RKKPLPVYEVVDIQGDAPNQHFKVVCLVEGLPRVMGEGSSRRFAEQTAAAEILKLLEQ 230
>gi|452205270|ref|YP_007485399.1| ribonuclease III [Dehalococcoides mccartyi BTF08]
gi|452112326|gb|AGG08057.1| ribonuclease III [Dehalococcoides mccartyi BTF08]
Length = 248
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 118/251 (47%), Gaps = 44/251 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYP 92
+EN + F+ LLE+AL H+S+ + S S +R+EF+GDA LG+ ++ ++ +P
Sbjct: 18 LENSLGVKFEQPSLLEQALIHTSWVNENPNHPSGSNERMEFLGDAVLGVIFADRLYHDFP 77
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ G L+ R+ + E L RVA+ K++ E VS+
Sbjct: 78 DIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGR----------GEDVSK------- 120
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQK--LWMIFRGLLEPIVT----------LEE 200
G K P LA E++ AAIY+D D+ + ++ +F+ +E + T L+E
Sbjct: 121 -GRFK-PANLAGAFEAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQE 178
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q +T +++ +G + NR IA VY + A S K+ A+ +AA
Sbjct: 179 LIQAQLQLTPRYRITNFSGPE-------HNRLFIAEVYAEDRVFAEGSGRSKKEAEASAA 231
Query: 261 REALEKLAQSM 271
+ AL++ S
Sbjct: 232 KVALQQFENSF 242
>gi|302694007|ref|XP_003036682.1| hypothetical protein SCHCODRAFT_102832 [Schizophyllum commune H4-8]
gi|300110379|gb|EFJ01780.1| hypothetical protein SCHCODRAFT_102832, partial [Schizophyllum
commune H4-8]
Length = 1489
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 114/242 (47%), Gaps = 15/242 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS-TSYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
V+++I LL ALTH++ + +Y+R+EF+GDA L + YV+ Y Q P
Sbjct: 1216 VQSVIGQKLNKPELLALALTHANNSSPLGNYERIEFLGDALLDFQVVEYVYRKYTQQPPS 1275
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV--SQEDNTAVYGGS 155
L+LL++A + LA + + G Y+ + + + + + A+ +++ A
Sbjct: 1276 VLTLLKSAMVGNSPLAAICAESGLYRHLHQKSHQIQQSINTYLTALQKAKQKEYAAADDD 1335
Query: 156 IKAPK-----VLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI----VTLEELQQQPQ 206
++ L+DIVESI AIY+ D + + +F+ L+P + + L
Sbjct: 1336 LRERGQYWFDALSDIVESIVGAIYISDDLEWTGVQQLFKHFLQPFYEKHIRMNTLAV--H 1393
Query: 207 PVTLLFKLCQKN-GKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
P +L +L Q ++++ + +V + G+ +AS ++ +A A+ AL
Sbjct: 1394 PTKILLELVQSQCCHKLELVKSASAGQTQCNVLLHGAVIASKTAVNGVLAARGASSIALN 1453
Query: 266 KL 267
KL
Sbjct: 1454 KL 1455
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 1 MNPE---SFTLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVE--NIINYN-FKNKRLLE 54
M PE T+P A+V LL ++LT + D +F V+ N I++N + LL
Sbjct: 946 MIPELCFKITIP-ASVMRTALLLPSVLTRI------DEIFLVKELNAIHFNHIIAEDLLH 998
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP-GQLSLLRAANISTEKLA 113
ALT S +Y+RLE GDA L S ++F+ D G+L R IS +KL
Sbjct: 999 AALTTPSAGFDRNYERLELYGDAFLKYLASLHLFVMSHHNDSEGKLHAARRPLISNQKLM 1058
Query: 114 RVAVKHGFYKFV 125
++ G FV
Sbjct: 1059 ECSLALGLPSFV 1070
>gi|291524528|emb|CBK90115.1| RNAse III [Eubacterium rectale DSM 17629]
gi|291527954|emb|CBK93540.1| RNAse III [Eubacterium rectale M104/1]
Length = 227
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 36/222 (16%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I Y FKN+ LLE+ALTHSSY + + +RLEF+GDA L + S ++F+ YPQ
Sbjct: 11 IGYTFKNRHLLEQALTHSSYANEKHMKKHSDNERLEFLGDAVLEIVSSEFLFINYPQKPE 70
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRA+ + LA K++R ED+T G
Sbjct: 71 GELTKLRASIVCEPTLALCTKPLDLGKYLRLGRG---------------EDHT----GGR 111
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-LEELQQQPQPVTLLFKLC 215
K +L+D +E++ AIY+D F K ++ L I+T +E Q T+L +L
Sbjct: 112 KRKSILSDALEAVIGAIYLDGGFTNAKEFV-----LRFIMTDIENKQLFYDSKTILQELI 166
Query: 216 QKNGKQ-----VDIKHWRKNRKNIASVYVDGSFVASASSEQK 252
Q +Q +D +++ +V VDG V+ K
Sbjct: 167 QGRHEQLSYELIDESGPDHDKQFTVAVLVDGERVSEGEGHTK 208
>gi|427407296|ref|ZP_18897501.1| ribonuclease III [Selenomonas sp. F0473]
gi|425707386|gb|EKU70431.1| ribonuclease III [Selenomonas sp. F0473]
Length = 251
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 121/268 (45%), Gaps = 44/268 (16%)
Query: 20 KEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDST-----SYQRLEFI 74
++AM + +PE A+ + + F + LL+EALTHSSY + + +RLE++
Sbjct: 11 RKAMAHGM-TPERRKALERLSVRLGIRFADISLLDEALTHSSYANESRKLIPHNERLEYL 69
Query: 75 GDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDD 134
GDA L LA S Y++ +P G+L+ +RA+ + +E LAR+A + ++R D
Sbjct: 70 GDAVLELASSTYLYECFPACTEGELTKMRASLVQSETLARLARRLDLGAYLRLGHGEAQD 129
Query: 135 KVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFR----- 189
G + L + E++ A+Y+D ++ K + +
Sbjct: 130 -------------------GGAERQNNLENAFEAVVGAVYLDGGWEAAKDYAYAQLASEV 170
Query: 190 GLLEP-------IVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGS 242
G L P TL+E Q+ Q T+ ++L ++G D ++ V V G
Sbjct: 171 GRLRPEQVQRDYKTTLQEYIQKTQRETVAYELVDESGPDHD-------KRFTTRVLVAGR 223
Query: 243 FVASASSEQKEIAKLNAAREALEKLAQS 270
+ + K+ A+ AA AL++L S
Sbjct: 224 AMGEGTGRSKKKAEQQAAAHALDRLGHS 251
>gi|315282805|ref|ZP_07871128.1| ribonuclease III [Listeria marthii FSL S4-120]
gi|313613534|gb|EFR87355.1| ribonuclease III [Listeria marthii FSL S4-120]
Length = 229
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 47/246 (19%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+ ++FK+ LL++A THSSY + +RLEF+GDA L L +S+Y+F YP++
Sbjct: 11 VGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPEMAE 70
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G ++ +RAA + L A F K+VR K +E A GG
Sbjct: 71 GHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG------KGEEKA------------GGRT 112
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQ 203
+ P +LAD+ ES A+Y+D D K+ ++ P + L+E+ Q
Sbjct: 113 R-PALLADVFESFIGALYLDNGID--KVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQ 169
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
+ + V + + + + G N+ A V V+G + S K+ A+ +AA+ A
Sbjct: 170 RDRDVLIEYDILGETGPA-------HNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFA 222
Query: 264 LEKLAQ 269
+ +L
Sbjct: 223 INQLTH 228
>gi|425746437|ref|ZP_18864467.1| ribonuclease III [Acinetobacter baumannii WC-323]
gi|425486314|gb|EKU52686.1| ribonuclease III [Acinetobacter baumannii WC-323]
Length = 218
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 27/234 (11%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
I + FK LL+ ALTH S + +Y+RLEF+GD+ LG+ ++NY++ AYP + G+L+ +
Sbjct: 5 IGHQFKQIDLLKLALTHRSVSHKHNYERLEFLGDSLLGMIVANYLYNAYPLENEGRLTRM 64
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
RA + E L ++A + + S L G +L
Sbjct: 65 RATLVRQEALGKIANDLQLSRSLILSTGELKS-------------------GGHHRESIL 105
Query: 163 ADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-TLEELQQQPQPVTLLFKLCQKNGKQ 221
AD VE+I AIY+D + DL L I EP + +E Q P + L + Q K
Sbjct: 106 ADTVEAIIGAIYLDCN-DLNLLERIVLKWYEPYLDHIEPTDQLKDPKSRLQEYLQARKKP 164
Query: 222 ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
VDI+ N+ VDG + A+ AA E L+ L Q
Sbjct: 165 LPVYEVVDIQGDAPNQHFKVECLVDGLPKIQGEGSSRRFAEQTAAAEILKLLEQ 218
>gi|394993931|ref|ZP_10386670.1| ribonuclease III [Bacillus sp. 916]
gi|452855540|ref|YP_007497223.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|393805255|gb|EJD66635.1| ribonuclease III [Bacillus sp. 916]
gi|452079800|emb|CCP21557.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 249
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 113/242 (46%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I+ +F+N++LL +A THSSY + +RLEF+GDA L L +S ++F YP +
Sbjct: 27 ISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSE 86
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAA + L +A + F V L K +E G
Sbjct: 87 GDLTKLRAAIVCEPSLVSLAHELSFGDLV------LLGKGEEMT-------------GGR 127
Query: 157 KAPKVLADIVESIAAAIYVDIDFD-LQKLWMI----------FRGLLEPIVTLEELQQQP 205
K P +LAD+ E+ A+Y+D D +Q+ + F +++ L+E Q+
Sbjct: 128 KRPALLADVFEAFIGALYLDQGLDPVQQFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRD 187
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+L +K+ + G NR+ A V + G + + K+ A+ +AA+EAL
Sbjct: 188 GKGSLEYKILNEKGPA-------HNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALA 240
Query: 266 KL 267
KL
Sbjct: 241 KL 242
>gi|340960215|gb|EGS21396.1| hypothetical protein CTHT_0032530 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1596
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 111/277 (40%), Gaps = 55/277 (19%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS----TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+ Y F++ RLL A H +Y SYQRLEF+GDA L +A+ ++F +P DP
Sbjct: 1289 LGYTFRHPRLLRSAFQHPTYPSVYEHLPSYQRLEFLGDALLDMAIVEWLFARFPGADPQW 1348
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAA----LDDKVKEFAEAVSQEDNTAVYGG 154
L+ + A +S + L + GF+K + + L V E EA+ AV G
Sbjct: 1349 LTEHKMAMVSNQFLGCLGFMLGFHKNIACCSPQVGKDLARYVAEMEEALLAAKEDAVRAG 1408
Query: 155 SI-------------KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTL 198
+ PK L D+VE+ A++VD ++ ++ + P + L
Sbjct: 1409 KTEDDWARDFWLNCSRPPKCLPDVVEAYVGAVFVDSGYNFGEVRAFLERHIRPFFEDMRL 1468
Query: 199 EELQQQPQPVTLLFKLCQKNGKQVDIKHWR----------------------------KN 230
+ PVT+L + Q Q + WR
Sbjct: 1469 YDTFANNHPVTMLVAVMQ---GQFRCQEWRVLARELPAGPVAVALDGEDTTSGGEFGEGE 1525
Query: 231 RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+ + +V G +A A + K+ AA++ALE L
Sbjct: 1526 TRVVCAVRCHGQTLAHAVAASGRYGKVAAAKKALEVL 1562
>gi|406838055|ref|ZP_11097649.1| ribonuclease III [Lactobacillus vini DSM 20605]
Length = 235
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 74/137 (54%), Gaps = 25/137 (18%)
Query: 46 NFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYPQLDPGQL 99
+FK LL+EA TH+SY + Y+R+EF+GDA + L +S Y+F+ +P L G+L
Sbjct: 16 DFKKTELLDEAFTHASYVNEHPKENLKYYERIEFLGDAVMQLCVSEYLFIRFPNLPEGKL 75
Query: 100 SLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAP 159
S LRAA + + ++ AV+ F K++R K +E A+A + P
Sbjct: 76 SRLRAAMVCEDSFSKFAVECSFDKYIRLG------KGEEKAKARQR-------------P 116
Query: 160 KVLADIVESIAAAIYVD 176
+L DI ES A+Y+D
Sbjct: 117 SLLCDIFESFIGALYLD 133
>gi|433454594|ref|ZP_20413161.1| ribonuclease III [Mycoplasma sp. G5847]
gi|431933370|gb|ELK19963.1| ribonuclease III [Mycoplasma sp. G5847]
Length = 232
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 112/238 (47%), Gaps = 36/238 (15%)
Query: 45 YNFK--NKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
YN K N++L EALTH+SY++ SYQRLEF+GDA L + +S +++L Y +L G+
Sbjct: 10 YNIKINNEKLYSEALTHNSYSNEHKLKYSYQRLEFLGDAILQMYVSRFLYLNYSKLSEGE 69
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
L+ LRA+ + E L+RVA + ++ K E
Sbjct: 70 LTRLRASTVREETLSRVAKDINLGQIIKLGHGEYITKGYE-------------------K 110
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +LAD+ E++ AA+Y+D D W+ + L + I + + L +L Q
Sbjct: 111 PSILADVFEALTAAVYLDQKEDGLLNWLD-QTLFKYIKDSNFINDTKDFKSELQELLQSE 169
Query: 219 GKQVDIKH------WRKNRKNI---ASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
K+ D+K+ + N I SV +DG K+ A+ NAA + L KL
Sbjct: 170 -KRSDLKYITEREEFFTNENKILYTVSVNLDGQKYGIGKGYSKQEAEQNAASDCLSKL 226
>gi|184159116|ref|YP_001847455.1| ribonuclease III [Acinetobacter baumannii ACICU]
gi|417559784|ref|ZP_12210663.1| ribonuclease III [Acinetobacter baumannii OIFC137]
gi|417565517|ref|ZP_12216391.1| ribonuclease III [Acinetobacter baumannii OIFC143]
gi|417569770|ref|ZP_12220628.1| ribonuclease III [Acinetobacter baumannii OIFC189]
gi|417575567|ref|ZP_12226415.1| ribonuclease III [Acinetobacter baumannii Naval-17]
gi|183210710|gb|ACC58108.1| dsRNA-specific ribonuclease [Acinetobacter baumannii ACICU]
gi|395522366|gb|EJG10455.1| ribonuclease III [Acinetobacter baumannii OIFC137]
gi|395553993|gb|EJG19999.1| ribonuclease III [Acinetobacter baumannii OIFC189]
gi|395557273|gb|EJG23274.1| ribonuclease III [Acinetobacter baumannii OIFC143]
gi|395571056|gb|EJG31715.1| ribonuclease III [Acinetobacter baumannii Naval-17]
Length = 234
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 102/234 (43%), Gaps = 27/234 (11%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
I Y FK LL+ ALTH S + +Y+RLEF+GD+ LG+ ++NY++ AYP + G+L+ +
Sbjct: 21 IGYQFKQPELLQLALTHRSVSHKYNYERLEFLGDSLLGMIIANYLYHAYPHENEGRLTRM 80
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
RA + E L ++A + + S L G +L
Sbjct: 81 RATLVRQEALGKIATDLQLSRCLILSTGELK-------------------SGGHHRESIL 121
Query: 163 ADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-TLEELQQQPQPVTLLFKLCQKNGKQ 221
AD VE+I AIY+D DL L I P + +E Q P + L + Q K
Sbjct: 122 ADTVEAIIGAIYLD-SSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKP 180
Query: 222 ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
VDI+ ++ VDG + A+ AA E L+ L Q
Sbjct: 181 LPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILKLLEQ 234
>gi|169795096|ref|YP_001712889.1| ribonuclease III [Acinetobacter baumannii AYE]
gi|239501066|ref|ZP_04660376.1| ribonuclease III [Acinetobacter baumannii AB900]
gi|260556582|ref|ZP_05828800.1| ribonuclease III [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|301345824|ref|ZP_07226565.1| ribonuclease III [Acinetobacter baumannii AB056]
gi|301512403|ref|ZP_07237640.1| ribonuclease III [Acinetobacter baumannii AB058]
gi|301594764|ref|ZP_07239772.1| ribonuclease III [Acinetobacter baumannii AB059]
gi|332851055|ref|ZP_08433164.1| ribonuclease III [Acinetobacter baumannii 6013150]
gi|332869696|ref|ZP_08438884.1| ribonuclease III [Acinetobacter baumannii 6013113]
gi|332875945|ref|ZP_08443731.1| ribonuclease III [Acinetobacter baumannii 6014059]
gi|384144225|ref|YP_005526935.1| dsRNA-specific ribonuclease [Acinetobacter baumannii MDR-ZJ06]
gi|387122954|ref|YP_006288836.1| ribonuclease III [Acinetobacter baumannii MDR-TJ]
gi|403675441|ref|ZP_10937606.1| ribonuclease III [Acinetobacter sp. NCTC 10304]
gi|407933705|ref|YP_006849348.1| ribonuclease III [Acinetobacter baumannii TYTH-1]
gi|417870356|ref|ZP_12515322.1| ribonuclease III [Acinetobacter baumannii ABNIH1]
gi|417874396|ref|ZP_12519249.1| ribonuclease III [Acinetobacter baumannii ABNIH2]
gi|417877597|ref|ZP_12522288.1| ribonuclease III [Acinetobacter baumannii ABNIH3]
gi|417881773|ref|ZP_12526083.1| ribonuclease III [Acinetobacter baumannii ABNIH4]
gi|421203557|ref|ZP_15660694.1| ribonuclease III [Acinetobacter baumannii AC12]
gi|421533521|ref|ZP_15979804.1| ribonuclease III [Acinetobacter baumannii AC30]
gi|421704387|ref|ZP_16143832.1| ribonuclease III [Acinetobacter baumannii ZWS1122]
gi|421708165|ref|ZP_16147544.1| ribonuclease III [Acinetobacter baumannii ZWS1219]
gi|424051451|ref|ZP_17788983.1| ribonuclease 3 [Acinetobacter baumannii Ab11111]
gi|424059032|ref|ZP_17796523.1| ribonuclease 3 [Acinetobacter baumannii Ab33333]
gi|424062490|ref|ZP_17799976.1| ribonuclease 3 [Acinetobacter baumannii Ab44444]
gi|238685526|sp|A3M7P2.2|RNC_ACIBT RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|238688097|sp|B0VCU0.1|RNC_ACIBY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|384955634|sp|B7GYT0.2|RNC_ACIB3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|169148023|emb|CAM85886.1| ribonuclease III, ds RNA [Acinetobacter baumannii AYE]
gi|193078016|gb|ABO12936.2| ribonuclease III [Acinetobacter baumannii ATCC 17978]
gi|260409841|gb|EEX03141.1| ribonuclease III [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|332730219|gb|EGJ61544.1| ribonuclease III [Acinetobacter baumannii 6013150]
gi|332732598|gb|EGJ63831.1| ribonuclease III [Acinetobacter baumannii 6013113]
gi|332735811|gb|EGJ66852.1| ribonuclease III [Acinetobacter baumannii 6014059]
gi|342228043|gb|EGT92948.1| ribonuclease III [Acinetobacter baumannii ABNIH1]
gi|342229118|gb|EGT93988.1| ribonuclease III [Acinetobacter baumannii ABNIH2]
gi|342235314|gb|EGT99921.1| ribonuclease III [Acinetobacter baumannii ABNIH3]
gi|342238528|gb|EGU02959.1| ribonuclease III [Acinetobacter baumannii ABNIH4]
gi|347594718|gb|AEP07439.1| dsRNA-specific ribonuclease [Acinetobacter baumannii MDR-ZJ06]
gi|385877446|gb|AFI94541.1| ribonuclease III [Acinetobacter baumannii MDR-TJ]
gi|398326931|gb|EJN43072.1| ribonuclease III [Acinetobacter baumannii AC12]
gi|404665007|gb|EKB32970.1| ribonuclease 3 [Acinetobacter baumannii Ab11111]
gi|404669770|gb|EKB37662.1| ribonuclease 3 [Acinetobacter baumannii Ab33333]
gi|404671442|gb|EKB39285.1| ribonuclease 3 [Acinetobacter baumannii Ab44444]
gi|407190221|gb|EKE61440.1| ribonuclease III [Acinetobacter baumannii ZWS1122]
gi|407190778|gb|EKE61993.1| ribonuclease III [Acinetobacter baumannii ZWS1219]
gi|407902286|gb|AFU39117.1| ribonuclease III [Acinetobacter baumannii TYTH-1]
gi|409988521|gb|EKO44691.1| ribonuclease III [Acinetobacter baumannii AC30]
gi|452947998|gb|EME53479.1| ribonuclease III [Acinetobacter baumannii MSP4-16]
Length = 230
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 102/234 (43%), Gaps = 27/234 (11%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
I Y FK LL+ ALTH S + +Y+RLEF+GD+ LG+ ++NY++ AYP + G+L+ +
Sbjct: 17 IGYQFKQPELLQLALTHRSVSHKYNYERLEFLGDSLLGMIIANYLYHAYPHENEGRLTRM 76
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
RA + E L ++A + + S L G +L
Sbjct: 77 RATLVRQEALGKIATDLQLSRCLILSTGELK-------------------SGGHHRESIL 117
Query: 163 ADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-TLEELQQQPQPVTLLFKLCQKNGKQ 221
AD VE+I AIY+D DL L I P + +E Q P + L + Q K
Sbjct: 118 ADTVEAIIGAIYLD-SSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKP 176
Query: 222 ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
VDI+ ++ VDG + A+ AA E L+ L Q
Sbjct: 177 LPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGSSRRFAEQAAAAEILKLLEQ 230
>gi|385222103|ref|YP_005771236.1| ribonuclease III [Helicobacter pylori SouthAfrica7]
gi|317010882|gb|ADU84629.1| ribonuclease III [Helicobacter pylori SouthAfrica7]
Length = 234
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 42/243 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+K LLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 16 LEKALGYSFKDKHLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 75
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S + ++A ++R S++ K +E
Sbjct: 76 LSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEETSKGRE-------------------K 116
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI--------------VTLEELQQQ 204
P +L+ E++ A +Y++ D K+ I + LL L+EL Q
Sbjct: 117 PSILSSAFEALMAGVYLEAGLD--KVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQA 174
Query: 205 PQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 264
V ++L ++ G +++ ++Y+ A+A + K+ A+ A +AL
Sbjct: 175 QFCVIPTYQLLKEKGPA-------HHKEFEMALYIQNQMYATAKGKSKKEAEQQCAYQAL 227
Query: 265 EKL 267
+KL
Sbjct: 228 QKL 230
>gi|420422011|ref|ZP_14921089.1| ribonuclease III [Helicobacter pylori NQ4110]
gi|393038529|gb|EJB39563.1| ribonuclease III [Helicobacter pylori NQ4110]
Length = 239
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S + GF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSAQ---------GFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQKLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
AL+KL ++
Sbjct: 229 YYALQKLKEA 238
>gi|69246105|ref|ZP_00603811.1| Ribonuclease III [Enterococcus faecium DO]
gi|257878770|ref|ZP_05658423.1| ribonuclease III [Enterococcus faecium 1,230,933]
gi|257881410|ref|ZP_05661063.1| ribonuclease III [Enterococcus faecium 1,231,502]
gi|257885678|ref|ZP_05665331.1| ribonuclease III [Enterococcus faecium 1,231,501]
gi|257887975|ref|ZP_05667628.1| ribonuclease III [Enterococcus faecium 1,141,733]
gi|257890628|ref|ZP_05670281.1| ribonuclease III [Enterococcus faecium 1,231,410]
gi|257893222|ref|ZP_05672875.1| ribonuclease III [Enterococcus faecium 1,231,408]
gi|257896407|ref|ZP_05676060.1| ribonuclease III [Enterococcus faecium Com12]
gi|257899381|ref|ZP_05679034.1| ribonuclease III [Enterococcus faecium Com15]
gi|260558338|ref|ZP_05830534.1| ribonuclease III [Enterococcus faecium C68]
gi|261207043|ref|ZP_05921732.1| ribonuclease III [Enterococcus faecium TC 6]
gi|289565324|ref|ZP_06445774.1| ribonuclease III [Enterococcus faecium D344SRF]
gi|293379492|ref|ZP_06625636.1| ribonuclease III [Enterococcus faecium PC4.1]
gi|293556818|ref|ZP_06675379.1| ribonuclease III [Enterococcus faecium E1039]
gi|293562991|ref|ZP_06677458.1| ribonuclease III [Enterococcus faecium E1162]
gi|293567880|ref|ZP_06679221.1| ribonuclease III [Enterococcus faecium E1071]
gi|293570730|ref|ZP_06681780.1| ribonuclease III [Enterococcus faecium E980]
gi|294614479|ref|ZP_06694394.1| ribonuclease III [Enterococcus faecium E1636]
gi|294618515|ref|ZP_06698077.1| ribonuclease III [Enterococcus faecium E1679]
gi|294621998|ref|ZP_06701142.1| ribonuclease III [Enterococcus faecium U0317]
gi|383327459|ref|YP_005353343.1| ribonuclease III [Enterococcus faecium Aus0004]
gi|406580108|ref|ZP_11055328.1| ribonuclease III [Enterococcus sp. GMD4E]
gi|406582771|ref|ZP_11057868.1| ribonuclease III [Enterococcus sp. GMD3E]
gi|406585121|ref|ZP_11060116.1| ribonuclease III [Enterococcus sp. GMD2E]
gi|410938000|ref|ZP_11369858.1| ribonuclease III [Enterococcus sp. GMD5E]
gi|415897961|ref|ZP_11551209.1| ribonuclease III [Enterococcus faecium E4453]
gi|416134603|ref|ZP_11598307.1| ribonuclease III [Enterococcus faecium E4452]
gi|427396987|ref|ZP_18889613.1| ribonuclease 3 [Enterococcus durans FB129-CNAB-4]
gi|430820973|ref|ZP_19439591.1| ribonuclease 3 [Enterococcus faecium E0045]
gi|430823321|ref|ZP_19441893.1| ribonuclease 3 [Enterococcus faecium E0120]
gi|430826392|ref|ZP_19444576.1| ribonuclease 3 [Enterococcus faecium E0164]
gi|430828822|ref|ZP_19446936.1| ribonuclease 3 [Enterococcus faecium E0269]
gi|430831864|ref|ZP_19449912.1| ribonuclease 3 [Enterococcus faecium E0333]
gi|430834832|ref|ZP_19452834.1| ribonuclease 3 [Enterococcus faecium E0679]
gi|430836416|ref|ZP_19454397.1| ribonuclease 3 [Enterococcus faecium E0680]
gi|430839338|ref|ZP_19457279.1| ribonuclease 3 [Enterococcus faecium E0688]
gi|430842447|ref|ZP_19460362.1| ribonuclease 3 [Enterococcus faecium E1007]
gi|430843103|ref|ZP_19461005.1| ribonuclease 3 [Enterococcus faecium E1050]
gi|430850746|ref|ZP_19468503.1| ribonuclease 3 [Enterococcus faecium E1185]
gi|430853246|ref|ZP_19470976.1| ribonuclease 3 [Enterococcus faecium E1258]
gi|430855706|ref|ZP_19473412.1| ribonuclease 3 [Enterococcus faecium E1392]
gi|430858967|ref|ZP_19476585.1| ribonuclease 3 [Enterococcus faecium E1552]
gi|430861281|ref|ZP_19478870.1| ribonuclease 3 [Enterococcus faecium E1573]
gi|430866354|ref|ZP_19481631.1| ribonuclease 3 [Enterococcus faecium E1574]
gi|430892080|ref|ZP_19484486.1| ribonuclease 3 [Enterococcus faecium E1575]
gi|430952324|ref|ZP_19486367.1| ribonuclease 3 [Enterococcus faecium E1576]
gi|430999207|ref|ZP_19488175.1| ribonuclease 3 [Enterococcus faecium E1578]
gi|431036460|ref|ZP_19492230.1| ribonuclease 3 [Enterococcus faecium E1590]
gi|431081664|ref|ZP_19495754.1| ribonuclease 3 [Enterococcus faecium E1604]
gi|431118143|ref|ZP_19498097.1| ribonuclease 3 [Enterococcus faecium E1613]
gi|431209600|ref|ZP_19500961.1| ribonuclease 3 [Enterococcus faecium E1620]
gi|431234955|ref|ZP_19502978.1| ribonuclease 3 [Enterococcus faecium E1622]
gi|431255661|ref|ZP_19504784.1| ribonuclease 3 [Enterococcus faecium E1623]
gi|431303493|ref|ZP_19508340.1| ribonuclease 3 [Enterococcus faecium E1626]
gi|431380466|ref|ZP_19510847.1| ribonuclease 3 [Enterococcus faecium E1627]
gi|431438089|ref|ZP_19513252.1| ribonuclease 3 [Enterococcus faecium E1630]
gi|431506848|ref|ZP_19515674.1| ribonuclease 3 [Enterococcus faecium E1634]
gi|431545032|ref|ZP_19518673.1| ribonuclease 3 [Enterococcus faecium E1731]
gi|431592292|ref|ZP_19521528.1| ribonuclease 3 [Enterococcus faecium E1861]
gi|431695910|ref|ZP_19524804.1| ribonuclease 3 [Enterococcus faecium E1904]
gi|431739025|ref|ZP_19527965.1| ribonuclease 3 [Enterococcus faecium E1972]
gi|431740695|ref|ZP_19529606.1| ribonuclease 3 [Enterococcus faecium E2039]
gi|431744016|ref|ZP_19532889.1| ribonuclease 3 [Enterococcus faecium E2071]
gi|431747189|ref|ZP_19535988.1| ribonuclease 3 [Enterococcus faecium E2134]
gi|431749381|ref|ZP_19538122.1| ribonuclease 3 [Enterococcus faecium E2297]
gi|431753069|ref|ZP_19541747.1| ribonuclease 3 [Enterococcus faecium E2620]
gi|431755895|ref|ZP_19544537.1| ribonuclease 3 [Enterococcus faecium E2883]
gi|431757896|ref|ZP_19546525.1| ribonuclease 3 [Enterococcus faecium E3083]
gi|431760118|ref|ZP_19548722.1| ribonuclease 3 [Enterococcus faecium E3346]
gi|431763163|ref|ZP_19551716.1| ribonuclease 3 [Enterococcus faecium E3548]
gi|431764954|ref|ZP_19553480.1| ribonuclease 3 [Enterococcus faecium E4215]
gi|431768030|ref|ZP_19556471.1| ribonuclease 3 [Enterococcus faecium E1321]
gi|431769465|ref|ZP_19557875.1| ribonuclease 3 [Enterococcus faecium E1644]
gi|431773324|ref|ZP_19561650.1| ribonuclease 3 [Enterococcus faecium E2369]
gi|431776421|ref|ZP_19564683.1| ribonuclease 3 [Enterococcus faecium E2560]
gi|431779658|ref|ZP_19567850.1| ribonuclease 3 [Enterococcus faecium E4389]
gi|431782539|ref|ZP_19570672.1| ribonuclease 3 [Enterococcus faecium E6012]
gi|431784360|ref|ZP_19572402.1| ribonuclease 3 [Enterococcus faecium E6045]
gi|447911625|ref|YP_007393037.1| Ribonuclease III [Enterococcus faecium NRRL B-2354]
gi|68195400|gb|EAN09847.1| Ribonuclease III [Enterococcus faecium DO]
gi|257812998|gb|EEV41756.1| ribonuclease III [Enterococcus faecium 1,230,933]
gi|257817068|gb|EEV44396.1| ribonuclease III [Enterococcus faecium 1,231,502]
gi|257821534|gb|EEV48664.1| ribonuclease III [Enterococcus faecium 1,231,501]
gi|257824029|gb|EEV50961.1| ribonuclease III [Enterococcus faecium 1,141,733]
gi|257826988|gb|EEV53614.1| ribonuclease III [Enterococcus faecium 1,231,410]
gi|257829601|gb|EEV56208.1| ribonuclease III [Enterococcus faecium 1,231,408]
gi|257832972|gb|EEV59393.1| ribonuclease III [Enterococcus faecium Com12]
gi|257837293|gb|EEV62367.1| ribonuclease III [Enterococcus faecium Com15]
gi|260075512|gb|EEW63818.1| ribonuclease III [Enterococcus faecium C68]
gi|260078671|gb|EEW66373.1| ribonuclease III [Enterococcus faecium TC 6]
gi|289162814|gb|EFD10664.1| ribonuclease III [Enterococcus faecium D344SRF]
gi|291589465|gb|EFF21272.1| ribonuclease III [Enterococcus faecium E1071]
gi|291592656|gb|EFF24250.1| ribonuclease III [Enterococcus faecium E1636]
gi|291595215|gb|EFF26546.1| ribonuclease III [Enterococcus faecium E1679]
gi|291598425|gb|EFF29498.1| ribonuclease III [Enterococcus faecium U0317]
gi|291600902|gb|EFF31193.1| ribonuclease III [Enterococcus faecium E1039]
gi|291605117|gb|EFF34584.1| ribonuclease III [Enterococcus faecium E1162]
gi|291609202|gb|EFF38474.1| ribonuclease III [Enterococcus faecium E980]
gi|292642015|gb|EFF60181.1| ribonuclease III [Enterococcus faecium PC4.1]
gi|364090286|gb|EHM32892.1| ribonuclease III [Enterococcus faecium E4453]
gi|364092476|gb|EHM34848.1| ribonuclease III [Enterococcus faecium E4452]
gi|378937153|gb|AFC62225.1| ribonuclease III [Enterococcus faecium Aus0004]
gi|404454612|gb|EKA01534.1| ribonuclease III [Enterococcus sp. GMD4E]
gi|404457508|gb|EKA04045.1| ribonuclease III [Enterococcus sp. GMD3E]
gi|404463103|gb|EKA08801.1| ribonuclease III [Enterococcus sp. GMD2E]
gi|410733639|gb|EKQ75562.1| ribonuclease III [Enterococcus sp. GMD5E]
gi|425722734|gb|EKU85628.1| ribonuclease 3 [Enterococcus durans FB129-CNAB-4]
gi|430438958|gb|ELA49349.1| ribonuclease 3 [Enterococcus faecium E0045]
gi|430442419|gb|ELA52464.1| ribonuclease 3 [Enterococcus faecium E0120]
gi|430445116|gb|ELA54900.1| ribonuclease 3 [Enterococcus faecium E0164]
gi|430480505|gb|ELA57679.1| ribonuclease 3 [Enterococcus faecium E0333]
gi|430482717|gb|ELA59822.1| ribonuclease 3 [Enterococcus faecium E0269]
gi|430484901|gb|ELA61848.1| ribonuclease 3 [Enterococcus faecium E0679]
gi|430488543|gb|ELA65214.1| ribonuclease 3 [Enterococcus faecium E0680]
gi|430490796|gb|ELA67292.1| ribonuclease 3 [Enterococcus faecium E0688]
gi|430493528|gb|ELA69831.1| ribonuclease 3 [Enterococcus faecium E1007]
gi|430498157|gb|ELA74165.1| ribonuclease 3 [Enterococcus faecium E1050]
gi|430535105|gb|ELA75528.1| ribonuclease 3 [Enterococcus faecium E1185]
gi|430541068|gb|ELA81245.1| ribonuclease 3 [Enterococcus faecium E1258]
gi|430544486|gb|ELA84515.1| ribonuclease 3 [Enterococcus faecium E1552]
gi|430546248|gb|ELA86210.1| ribonuclease 3 [Enterococcus faecium E1392]
gi|430550314|gb|ELA90111.1| ribonuclease 3 [Enterococcus faecium E1573]
gi|430551582|gb|ELA91333.1| ribonuclease 3 [Enterococcus faecium E1574]
gi|430555745|gb|ELA95280.1| ribonuclease 3 [Enterococcus faecium E1575]
gi|430557459|gb|ELA96918.1| ribonuclease 3 [Enterococcus faecium E1576]
gi|430563000|gb|ELB02231.1| ribonuclease 3 [Enterococcus faecium E1590]
gi|430563314|gb|ELB02543.1| ribonuclease 3 [Enterococcus faecium E1578]
gi|430565596|gb|ELB04742.1| ribonuclease 3 [Enterococcus faecium E1604]
gi|430568100|gb|ELB07157.1| ribonuclease 3 [Enterococcus faecium E1613]
gi|430570632|gb|ELB09578.1| ribonuclease 3 [Enterococcus faecium E1620]
gi|430572815|gb|ELB11651.1| ribonuclease 3 [Enterococcus faecium E1622]
gi|430577859|gb|ELB16439.1| ribonuclease 3 [Enterococcus faecium E1623]
gi|430580134|gb|ELB18614.1| ribonuclease 3 [Enterococcus faecium E1626]
gi|430582334|gb|ELB20761.1| ribonuclease 3 [Enterococcus faecium E1627]
gi|430586924|gb|ELB25166.1| ribonuclease 3 [Enterococcus faecium E1630]
gi|430587235|gb|ELB25468.1| ribonuclease 3 [Enterococcus faecium E1634]
gi|430591917|gb|ELB29944.1| ribonuclease 3 [Enterococcus faecium E1861]
gi|430592080|gb|ELB30102.1| ribonuclease 3 [Enterococcus faecium E1731]
gi|430596568|gb|ELB34392.1| ribonuclease 3 [Enterococcus faecium E1972]
gi|430597863|gb|ELB35645.1| ribonuclease 3 [Enterococcus faecium E1904]
gi|430602778|gb|ELB40328.1| ribonuclease 3 [Enterococcus faecium E2039]
gi|430606079|gb|ELB43451.1| ribonuclease 3 [Enterococcus faecium E2071]
gi|430606718|gb|ELB44056.1| ribonuclease 3 [Enterococcus faecium E2134]
gi|430611510|gb|ELB48591.1| ribonuclease 3 [Enterococcus faecium E2297]
gi|430612817|gb|ELB49848.1| ribonuclease 3 [Enterococcus faecium E2620]
gi|430616010|gb|ELB52935.1| ribonuclease 3 [Enterococcus faecium E2883]
gi|430618401|gb|ELB55248.1| ribonuclease 3 [Enterococcus faecium E3083]
gi|430622857|gb|ELB59567.1| ribonuclease 3 [Enterococcus faecium E3548]
gi|430625387|gb|ELB62027.1| ribonuclease 3 [Enterococcus faecium E3346]
gi|430629725|gb|ELB66114.1| ribonuclease 3 [Enterococcus faecium E4215]
gi|430629759|gb|ELB66147.1| ribonuclease 3 [Enterococcus faecium E1321]
gi|430636747|gb|ELB72807.1| ribonuclease 3 [Enterococcus faecium E2369]
gi|430637040|gb|ELB73084.1| ribonuclease 3 [Enterococcus faecium E1644]
gi|430640972|gb|ELB76793.1| ribonuclease 3 [Enterococcus faecium E2560]
gi|430641420|gb|ELB77222.1| ribonuclease 3 [Enterococcus faecium E4389]
gi|430647176|gb|ELB82624.1| ribonuclease 3 [Enterococcus faecium E6012]
gi|430649934|gb|ELB85301.1| ribonuclease 3 [Enterococcus faecium E6045]
gi|445187334|gb|AGE28976.1| Ribonuclease III [Enterococcus faecium NRRL B-2354]
Length = 228
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 104/228 (45%), Gaps = 45/228 (19%)
Query: 44 NYN--FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
NYN F + LLE+A THSSY + + +RLEF+GDA L L +S Y+F YP L
Sbjct: 12 NYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYPHLP 71
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
G+L+ RAA + + L++ A + F ++V E+N+ GG
Sbjct: 72 EGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKG---------------EENS---GGR 113
Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQ 204
+ P +L D+ E+ A+Y+D FD ++ F ++ L+E+ Q+
Sbjct: 114 TR-PALLCDLFEAFLGALYLDQGFDTTHAFIEKVIFPKVKAGAFSHEMDHKTKLQEVLQK 172
Query: 205 PQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQK 252
V++ ++L + G + W VYVD + + + K
Sbjct: 173 SGDVSIEYRLINEEGPAHERVFW-------IEVYVDDQLIGTGQGKSK 213
>gi|424776467|ref|ZP_18203448.1| ribonuclease III [Alcaligenes sp. HPC1271]
gi|422888287|gb|EKU30676.1| ribonuclease III [Alcaligenes sp. HPC1271]
Length = 252
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 25/187 (13%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E I Y+FK+ LLE+ALTH S++ + +RLEF+GD+ L ++ +F + ++D G
Sbjct: 7 LEAAIGYSFKDTGLLEQALTHRSHS-ARHNERLEFLGDSVLNFTVAALLFDRFQRIDEGD 65
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA + LA +A + G ++R L G +
Sbjct: 66 LSRLRANLVKQAALAEIATRLGLSDYLRLGEGELKS-------------------GGFRR 106
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP-IVTLEELQQQPQPVTLLFKLCQK 217
P +LAD +E+I A+++D F + + L EP +V ++ P TLL +L Q
Sbjct: 107 PSILADALEAIFGAVFLDAGF--TQAQTVITQLYEPMLVDVDPKTLGKDPKTLLQELLQ- 163
Query: 218 NGKQVDI 224
G+++D+
Sbjct: 164 -GRKLDL 169
>gi|358012513|ref|ZP_09144323.1| ribonuclease III [Acinetobacter sp. P8-3-8]
Length = 225
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 104/238 (43%), Gaps = 27/238 (11%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+++ I Y FK LL+ ALTH S + +Y+RLEF+GD+ LG+ +++Y++ AYP + G+
Sbjct: 8 LQSRIGYQFKQHELLQLALTHRSVSHKYNYERLEFLGDSLLGMIIAHYLYHAYPTENEGR 67
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
L+ +RA + E L ++A + S L G
Sbjct: 68 LTRMRATLVRQEALGKIANDLKLSTSLILSTGELKS-------------------GGHHR 108
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-TLEELQQQPQPVTLLFKLCQK 217
+LAD VE+I AIY D + DL L I EP +E Q P + L + Q
Sbjct: 109 ESILADTVEAIIGAIYTDCE-DLPLLRSIVLKWYEPYFENIEPTDQLKDPKSRLQEYLQA 167
Query: 218 NGKQ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
KQ VDI+ N+ VDG + A+ A + L+ L Q
Sbjct: 168 RKKQLPIYEVVDIQGDAPNQHFKVECTVDGLPKMMGEGSSRRFAEQAVAADFLKLLEQ 225
>gi|220927101|ref|YP_002502403.1| ribonuclease III [Methylobacterium nodulans ORS 2060]
gi|219951708|gb|ACL62100.1| ribonuclease III [Methylobacterium nodulans ORS 2060]
Length = 244
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 20/146 (13%)
Query: 39 VENIINYNFKNKRLLEEALTH-SSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
+E I + F ++ LL ALTH S+ T SYQRLEF+GD LGLA+++ +F A P D G
Sbjct: 19 LEEKIGHRFADQELLVRALTHVSAATGPESYQRLEFLGDRVLGLAVADGLFAALPGADEG 78
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157
LS + + E A VA ++ A VYGG +
Sbjct: 79 DLSRRLSGLVRRESCAAVATAWDVGPHLKLGAG-------------------EVYGGGRR 119
Query: 158 APKVLADIVESIAAAIYVDIDFDLQK 183
P +LAD+ E+I AI++D ++ K
Sbjct: 120 NPAILADVCEAILGAIFLDAGYEAAK 145
>gi|16800985|ref|NP_471253.1| ribonuclease III [Listeria innocua Clip11262]
gi|422413349|ref|ZP_16490308.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|423098714|ref|ZP_17086422.1| ribonuclease III [Listeria innocua ATCC 33091]
gi|22654065|sp|Q92AK3.1|RNC_LISIN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|16414420|emb|CAC97149.1| rncS [Listeria innocua Clip11262]
gi|313618316|gb|EFR90363.1| ribonuclease III [Listeria innocua FSL S4-378]
gi|370794541|gb|EHN62304.1| ribonuclease III [Listeria innocua ATCC 33091]
Length = 229
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 113/246 (45%), Gaps = 47/246 (19%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+ ++F+N LL++A THSSY + +RLEF+GDA L L +S+Y+F YP +
Sbjct: 11 VGFDFQNVELLQQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAE 70
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G ++ +RAA + L A F K+VR K +E A GG
Sbjct: 71 GHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG------KGEEKA------------GGRT 112
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQ 203
+ P +LAD+ ES A+Y+D D K+ ++ P + L+E+ Q
Sbjct: 113 R-PALLADVFESFIGALYLDNGID--KVVKFLERVIFPKIDAGAYLQTVDYKTQLQEIVQ 169
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
+ + V + + + + G N+ A V V+G + S K+ A+ +AA+ A
Sbjct: 170 RDRDVLIEYDILGETGPA-------HNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFA 222
Query: 264 LEKLAQ 269
+ +L
Sbjct: 223 INQLTH 228
>gi|392596196|gb|EIW85519.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 1520
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 129/299 (43%), Gaps = 43/299 (14%)
Query: 27 LPSPEMEDAVFY-VENIINYNFKNKRLLEEALTHSSYTDST--SYQRLEFIGDAALGLAL 83
+P P +F +++ + Y F LL EA TH S+ S SYQRLEF+GDA L + +
Sbjct: 1174 VPDPSPAPPLFEELQSGLGYEFHRGDLLVEAATHPSFATSAGASYQRLEFLGDALLDVVV 1233
Query: 84 SNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV 143
Y+F YP+ GQLS+ R+ + LA VAVK + H +++ E + A+
Sbjct: 1234 MRYLFHKYPRATSGQLSVARSRAVCGPTLASVAVK----RLNLHQILLINN--VELSIAI 1287
Query: 144 SQE----DNTAVYGGSIKA-----PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194
S+ N +KA PK L+DI+ES+ A+ VD ++ +K + ++
Sbjct: 1288 SRHVPLLQNLPTQEIVLKAWKYDPPKALSDIMESVFGAVLVDSAYNYEKAAAVVEEVMSE 1347
Query: 195 IVTLEELQQQPQPVTLLFKL-----CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASS 249
++ L PVT L C + Q H R + SV G +
Sbjct: 1348 VLELISPSVARDPVTDLMLWSAAAGCSRITFQKSQSHPELRRNDSISVLAHGIVI----- 1402
Query: 250 EQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPK 308
+ + AA +L K S I DD +F I+ ++C ++ PK
Sbjct: 1403 ----VGPVTAANPSLSKGLASERARA----ILDDPTHEFHIK-------KMCNCREKPK 1446
Score = 40.8 bits (94), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
LL EA + + + + QR E +GD+ L L ++ ++ YP GQLS LR +++S
Sbjct: 1005 LLIEAASLPTTLHTWNNQRFETLGDSVLKLGVTVHIMNKYPHRHEGQLSKLRQSSVSNRT 1064
Query: 112 LARVAVKHGFYKFVRHSAAAL 132
L A + G F+ +L
Sbjct: 1065 LLARAKEIGLEIFLNSETQSL 1085
>gi|295397856|ref|ZP_06807919.1| ribonuclease III [Aerococcus viridans ATCC 11563]
gi|294973901|gb|EFG49665.1| ribonuclease III [Aerococcus viridans ATCC 11563]
Length = 247
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 25/132 (18%)
Query: 55 EALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
EA THSSY + +R+EF+GDA L L +SNY++ YP++D G++S LRA +
Sbjct: 42 EAFTHSSYVNENQNLALQDNERIEFLGDAVLELVVSNYLYRNYPEMDEGRMSSLRALIVR 101
Query: 109 TEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVES 168
E LA+ V+ GF +FVR N K P +L D+ ES
Sbjct: 102 EESLAKRCVECGFDQFVRLG-------------------NGEEASNGRKRPSLLCDLFES 142
Query: 169 IAAAIYVDIDFD 180
+ AIY+D+ D
Sbjct: 143 VLGAIYLDLGLD 154
>gi|262375526|ref|ZP_06068759.1| ribonuclease III [Acinetobacter lwoffii SH145]
gi|262309780|gb|EEY90910.1| ribonuclease III [Acinetobacter lwoffii SH145]
gi|407008100|gb|EKE23572.1| hypothetical protein ACD_6C00421G0002 [uncultured bacterium]
Length = 232
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 76/154 (49%), Gaps = 28/154 (18%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
I Y FK LL+ ALTH S + +Y+RLEF+GD+ LG+ ++NY+F AYP + G+L+ +
Sbjct: 17 IGYQFKQADLLKLALTHRSVSHKHNYERLEFLGDSLLGMIIANYLFNAYPSENEGRLTRM 76
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
RA + E L ++A + + S L G +L
Sbjct: 77 RATLVRQEALGKIANDLKLSQNLILSTGELKS-------------------GGHHRESIL 117
Query: 163 ADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV 196
AD VE+I AIYVD DL +LEPIV
Sbjct: 118 ADTVEAIIGAIYVDCG-DLT--------VLEPIV 142
>gi|57234229|ref|YP_181741.1| ribonuclease III [Dehalococcoides ethenogenes 195]
gi|90101623|sp|Q3Z7Q8.1|RNC_DEHE1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|57224677|gb|AAW39734.1| ribonuclease III [Dehalococcoides ethenogenes 195]
Length = 237
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 48/259 (18%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYP 92
+E + F+N LLE+AL H+S+ + S S +R+EF+GDA LG+ ++ ++ +P
Sbjct: 7 LEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRLYHDFP 66
Query: 93 QLDPGQLSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTA 150
+ G L+ R+ + E L RVA + G Y ++ A + K
Sbjct: 67 DIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGRGEDASKGRFK------------- 113
Query: 151 VYGGSIKAPKVLADIVESIAAAIYVD--IDFDLQKLWMIFRGLLEPIVT----------L 198
P LA E++ AAIY+D ID + ++ +F+ +E + T L
Sbjct: 114 --------PANLAGAFEAVLAAIYLDKGIDATREVIFRLFKTEMERVQTLSSNIDYKSRL 165
Query: 199 EELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLN 258
+EL Q +T +++ +G + N IA VY + +A S K+ A+ +
Sbjct: 166 QELVQAQFQLTPRYRIIDFSGPE-------HNHLFIAEVYTEDKVLAEGSGRSKKEAETS 218
Query: 259 AAREALEKLAQSMPVNCDV 277
AA+EAL++ S ++
Sbjct: 219 AAKEALQQFENSFTAEDNI 237
>gi|405983301|ref|ZP_11041611.1| ribonuclease III [Slackia piriformis YIT 12062]
gi|404389309|gb|EJZ84386.1| ribonuclease III [Slackia piriformis YIT 12062]
Length = 258
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 115/247 (46%), Gaps = 30/247 (12%)
Query: 31 EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNY 86
E + V + II +F + +L A+TH S T+ SY+RLEF+GD+ LG ++N
Sbjct: 6 EQQRKVEEAQRIIGRDFDDPDILLSAITHPSATEGKPVKFSYERLEFLGDSILGAIVANE 65
Query: 87 VFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE 146
F YP+LD G L+ ++ A +S LA VA K GF + S E
Sbjct: 66 AFHEYPELDEGGLTRIKVALVSGTSLAEVAEKLGFADVIVFG---------------SSE 110
Query: 147 DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQ 206
T G L ++ E++ AA+++D + ++ R L P +++E ++
Sbjct: 111 RGTGRRG----LHSALENVYEAVVAALFLDSGIAGAQAFV--RRTLIPKMSVEMAREPEN 164
Query: 207 PVTLLFKLCQKNG-----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
P + L + Q+ G K V+ + +R ++ V+ +AS K+ A+ AA+
Sbjct: 165 PKSALQEKLQEEGITPTYKLVETQGPPHDRTFVSQVFAGMKALASGMGRTKKEAESQAAK 224
Query: 262 EALEKLA 268
AL+ L
Sbjct: 225 TALDALG 231
>gi|343525890|ref|ZP_08762843.1| ribonuclease III [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
gi|423068319|ref|ZP_17057107.1| ribonuclease 3 [Streptococcus intermedius F0395]
gi|343395300|gb|EGV07841.1| ribonuclease III [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
gi|355367210|gb|EHG14923.1| ribonuclease 3 [Streptococcus intermedius F0395]
Length = 232
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 109/233 (46%), Gaps = 35/233 (15%)
Query: 47 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
F+N+RLLE A TH+SY + + +RLEF+GDA L L +S Y++ YP+ G LS
Sbjct: 16 FQNERLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGDLS 75
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
LR+ + E LA GF + D + +F + E+ + G
Sbjct: 76 KLRSTIVREESLA------GFSR---------DCQFDQFIKLGRGEEKS----GGRNRDT 116
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGK 220
+L D+ E+ A+ +D D + K ++ ++ P V + +Q T L +L Q NG
Sbjct: 117 ILGDLFEAFLGALLLDKDVEAVKKFLY--QIMIPKVEAGDFEQVIDYKTKLQELLQVNG- 173
Query: 221 QVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAAREALEK 266
VDI + + A SV VDG V K++A+ AA+ A EK
Sbjct: 174 DVDIVYQVISESGPAHAKEFDVSVSVDGRVVGQGQGRSKKLAEQEAAKNAFEK 226
>gi|227550768|ref|ZP_03980817.1| ribonuclease III [Enterococcus faecium TX1330]
gi|314937654|ref|ZP_07844980.1| ribonuclease III [Enterococcus faecium TX0133a04]
gi|314942847|ref|ZP_07849660.1| ribonuclease III [Enterococcus faecium TX0133C]
gi|314948017|ref|ZP_07851421.1| ribonuclease III [Enterococcus faecium TX0082]
gi|314950935|ref|ZP_07854004.1| ribonuclease III [Enterococcus faecium TX0133A]
gi|314991417|ref|ZP_07856894.1| ribonuclease III [Enterococcus faecium TX0133B]
gi|314995062|ref|ZP_07860182.1| ribonuclease III [Enterococcus faecium TX0133a01]
gi|389867284|ref|YP_006374707.1| ribonuclease III [Enterococcus faecium DO]
gi|424763790|ref|ZP_18191255.1| ribonuclease III [Enterococcus faecium TX1337RF]
gi|424791403|ref|ZP_18217835.1| ribonuclease III [Enterococcus faecium V689]
gi|424797447|ref|ZP_18223031.1| ribonuclease III [Enterococcus faecium S447]
gi|424828237|ref|ZP_18252973.1| ribonuclease III [Enterococcus faecium R501]
gi|424854841|ref|ZP_18279184.1| ribonuclease III [Enterococcus faecium R499]
gi|424869418|ref|ZP_18293122.1| ribonuclease III [Enterococcus faecium R497]
gi|424950205|ref|ZP_18365376.1| ribonuclease III [Enterococcus faecium R496]
gi|424954344|ref|ZP_18369246.1| ribonuclease III [Enterococcus faecium R494]
gi|424958431|ref|ZP_18373077.1| ribonuclease III [Enterococcus faecium R446]
gi|424960282|ref|ZP_18374813.1| ribonuclease III [Enterococcus faecium P1986]
gi|424965596|ref|ZP_18379547.1| ribonuclease III [Enterococcus faecium P1190]
gi|424969514|ref|ZP_18383084.1| ribonuclease III [Enterococcus faecium P1140]
gi|424970489|ref|ZP_18383998.1| ribonuclease III [Enterococcus faecium P1139]
gi|424974109|ref|ZP_18387361.1| ribonuclease III [Enterococcus faecium P1137]
gi|424976652|ref|ZP_18389725.1| ribonuclease III [Enterococcus faecium P1123]
gi|424981080|ref|ZP_18393833.1| ribonuclease III [Enterococcus faecium ERV99]
gi|424984594|ref|ZP_18397122.1| ribonuclease III [Enterococcus faecium ERV69]
gi|424987454|ref|ZP_18399829.1| ribonuclease III [Enterococcus faecium ERV38]
gi|424990906|ref|ZP_18403096.1| ribonuclease III [Enterococcus faecium ERV26]
gi|424994563|ref|ZP_18406498.1| ribonuclease III [Enterococcus faecium ERV168]
gi|424997392|ref|ZP_18409155.1| ribonuclease III [Enterococcus faecium ERV165]
gi|425001410|ref|ZP_18412929.1| ribonuclease III [Enterococcus faecium ERV161]
gi|425003989|ref|ZP_18415319.1| ribonuclease III [Enterococcus faecium ERV102]
gi|425006908|ref|ZP_18418063.1| ribonuclease III [Enterococcus faecium ERV1]
gi|425010840|ref|ZP_18421771.1| ribonuclease III [Enterococcus faecium E422]
gi|425014158|ref|ZP_18424853.1| ribonuclease III [Enterococcus faecium E417]
gi|425017866|ref|ZP_18428347.1| ribonuclease III [Enterococcus faecium C621]
gi|425020875|ref|ZP_18431162.1| ribonuclease III [Enterococcus faecium C497]
gi|425030492|ref|ZP_18435665.1| ribonuclease III [Enterococcus faecium C1904]
gi|425032631|ref|ZP_18437657.1| ribonuclease III [Enterococcus faecium 515]
gi|425035582|ref|ZP_18440417.1| ribonuclease III [Enterococcus faecium 514]
gi|425037922|ref|ZP_18442559.1| ribonuclease III [Enterococcus faecium 513]
gi|425041759|ref|ZP_18446142.1| ribonuclease III [Enterococcus faecium 511]
gi|425045378|ref|ZP_18449484.1| ribonuclease III [Enterococcus faecium 510]
gi|425048552|ref|ZP_18452452.1| ribonuclease III [Enterococcus faecium 509]
gi|425051643|ref|ZP_18455300.1| ribonuclease III [Enterococcus faecium 506]
gi|425054205|ref|ZP_18457718.1| ribonuclease III [Enterococcus faecium 505]
gi|425058185|ref|ZP_18461576.1| ribonuclease III [Enterococcus faecium 504]
gi|425060584|ref|ZP_18463875.1| ribonuclease III [Enterococcus faecium 503]
gi|227180086|gb|EEI61058.1| ribonuclease III [Enterococcus faecium TX1330]
gi|313590788|gb|EFR69633.1| ribonuclease III [Enterococcus faecium TX0133a01]
gi|313593897|gb|EFR72742.1| ribonuclease III [Enterococcus faecium TX0133B]
gi|313596944|gb|EFR75789.1| ribonuclease III [Enterococcus faecium TX0133A]
gi|313598319|gb|EFR77164.1| ribonuclease III [Enterococcus faecium TX0133C]
gi|313643031|gb|EFS07611.1| ribonuclease III [Enterococcus faecium TX0133a04]
gi|313645615|gb|EFS10195.1| ribonuclease III [Enterococcus faecium TX0082]
gi|388532533|gb|AFK57725.1| ribonuclease III [Enterococcus faecium DO]
gi|402421966|gb|EJV54209.1| ribonuclease III [Enterococcus faecium TX1337RF]
gi|402919418|gb|EJX40018.1| ribonuclease III [Enterococcus faecium V689]
gi|402921003|gb|EJX41473.1| ribonuclease III [Enterococcus faecium S447]
gi|402922876|gb|EJX43220.1| ribonuclease III [Enterococcus faecium R501]
gi|402932233|gb|EJX51763.1| ribonuclease III [Enterococcus faecium R499]
gi|402933494|gb|EJX52920.1| ribonuclease III [Enterococcus faecium R496]
gi|402935590|gb|EJX54830.1| ribonuclease III [Enterococcus faecium R497]
gi|402936978|gb|EJX56122.1| ribonuclease III [Enterococcus faecium R494]
gi|402940215|gb|EJX59069.1| ribonuclease III [Enterococcus faecium R446]
gi|402943291|gb|EJX61787.1| ribonuclease III [Enterococcus faecium P1190]
gi|402948361|gb|EJX66507.1| ribonuclease III [Enterococcus faecium P1986]
gi|402948484|gb|EJX66621.1| ribonuclease III [Enterococcus faecium P1140]
gi|402957456|gb|EJX74847.1| ribonuclease III [Enterococcus faecium P1137]
gi|402961653|gb|EJX78665.1| ribonuclease III [Enterococcus faecium P1139]
gi|402964694|gb|EJX81462.1| ribonuclease III [Enterococcus faecium ERV99]
gi|402968541|gb|EJX85020.1| ribonuclease III [Enterococcus faecium ERV69]
gi|402968950|gb|EJX85399.1| ribonuclease III [Enterococcus faecium P1123]
gi|402974331|gb|EJX90387.1| ribonuclease III [Enterococcus faecium ERV38]
gi|402978365|gb|EJX94109.1| ribonuclease III [Enterococcus faecium ERV26]
gi|402979859|gb|EJX95504.1| ribonuclease III [Enterococcus faecium ERV168]
gi|402986368|gb|EJY01496.1| ribonuclease III [Enterococcus faecium ERV165]
gi|402986862|gb|EJY01966.1| ribonuclease III [Enterococcus faecium ERV161]
gi|402990642|gb|EJY05507.1| ribonuclease III [Enterococcus faecium ERV102]
gi|402996112|gb|EJY10515.1| ribonuclease III [Enterococcus faecium ERV1]
gi|402998652|gb|EJY12898.1| ribonuclease III [Enterococcus faecium E422]
gi|402999508|gb|EJY13695.1| ribonuclease III [Enterococcus faecium E417]
gi|403002725|gb|EJY16671.1| ribonuclease III [Enterococcus faecium C1904]
gi|403003493|gb|EJY17390.1| ribonuclease III [Enterococcus faecium C621]
gi|403008053|gb|EJY21582.1| ribonuclease III [Enterococcus faecium C497]
gi|403012388|gb|EJY25615.1| ribonuclease III [Enterococcus faecium 515]
gi|403017688|gb|EJY30416.1| ribonuclease III [Enterococcus faecium 514]
gi|403020703|gb|EJY33211.1| ribonuclease III [Enterococcus faecium 513]
gi|403025540|gb|EJY37618.1| ribonuclease III [Enterococcus faecium 511]
gi|403027144|gb|EJY39053.1| ribonuclease III [Enterococcus faecium 510]
gi|403030483|gb|EJY42166.1| ribonuclease III [Enterococcus faecium 509]
gi|403036473|gb|EJY47821.1| ribonuclease III [Enterococcus faecium 505]
gi|403037263|gb|EJY48563.1| ribonuclease III [Enterococcus faecium 506]
gi|403038979|gb|EJY50160.1| ribonuclease III [Enterococcus faecium 504]
gi|403042468|gb|EJY53418.1| ribonuclease III [Enterococcus faecium 503]
Length = 231
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 45/229 (19%)
Query: 44 NYN--FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
NYN F + LLE+A THSSY + + +RLEF+GDA L L +S Y+F YP L
Sbjct: 15 NYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYPHLP 74
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
G+L+ RAA + + L++ A + F ++V E+N+ GG
Sbjct: 75 EGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKG---------------EENS---GGR 116
Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQ 204
+ P +L D+ E+ A+Y+D FD ++ F ++ L+E+ Q+
Sbjct: 117 TR-PALLCDLFEAFLGALYLDQGFDTTHAFIEKVIFPKVKAGAFSHEMDHKTKLQEVLQK 175
Query: 205 PQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKE 253
V++ ++L + G + W VYVD + + + K+
Sbjct: 176 SGDVSIEYRLINEEGPAHERVFW-------IEVYVDDQLIGTGQGKSKK 217
>gi|226951500|ref|ZP_03821964.1| ds RNA ribonuclease III [Acinetobacter sp. ATCC 27244]
gi|294651022|ref|ZP_06728362.1| ribonuclease III [Acinetobacter haemolyticus ATCC 19194]
gi|226837793|gb|EEH70176.1| ds RNA ribonuclease III [Acinetobacter sp. ATCC 27244]
gi|292823123|gb|EFF81986.1| ribonuclease III [Acinetobacter haemolyticus ATCC 19194]
Length = 231
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 102/234 (43%), Gaps = 27/234 (11%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
I Y F+ LL+ ALTH S + +Y+RLEF+GD+ LG+ ++NY++ YP + G+L+ +
Sbjct: 18 IGYQFQQIDLLKLALTHRSVSHKHNYERLEFLGDSLLGMIIANYLYHTYPTENEGRLTRM 77
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
RA + E L ++A + + S L G +L
Sbjct: 78 RATLVRQEALGKIANDLQLSRSLILSTGELKS-------------------GGHHRESIL 118
Query: 163 ADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-TLEELQQQPQPVTLLFKLCQKNGKQ 221
AD VE+I AIY+D + DL L I EP +E Q P + L + Q K
Sbjct: 119 ADTVEAIIGAIYIDSN-DLNLLQGIVLKWYEPYFDHIEPTDQLKDPKSRLQEYLQARKKP 177
Query: 222 ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
VDI+ N+ VDG + A+ AA E L+ L Q
Sbjct: 178 LPVYEVVDIQGDAPNQHFKVECLVDGLPKIQGEGSSRRFAEQTAAAEILKLLEQ 231
>gi|149183216|ref|ZP_01861662.1| ribonuclease III [Bacillus sp. SG-1]
gi|148849081|gb|EDL63285.1| ribonuclease III [Bacillus sp. SG-1]
Length = 249
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 115/250 (46%), Gaps = 47/250 (18%)
Query: 44 NYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
N F N++LL +A THSSY + +RLEF+GDA L L +S +++ YP + G
Sbjct: 28 NIKFNNEKLLRQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTVSQFLYKKYPTMSEG 87
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157
+L+ LRAA + L A +++K F E V + GG +
Sbjct: 88 ELTKLRAAIVCEPSLVTFA-----------------NELK-FGELVLLGKGEELTGGR-E 128
Query: 158 APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-------------LEELQQQ 204
P +LAD+ E+ A+Y+D L+ + I + P + L+EL Q+
Sbjct: 129 RPALLADVFEAFIGALYLDQ--GLEPVLSILEENVYPKINSGAFSHVMDFKSQLQELVQR 186
Query: 205 PQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 264
T+ + + Q+ G NR+ ++ V ++G + + K+ A+ +AA+ AL
Sbjct: 187 DSAGTIEYGILQEKGPA-------HNREFVSRVCLNGEELGIGTGRSKKEAEQHAAQMAL 239
Query: 265 EKLAQSMPVN 274
EKL + N
Sbjct: 240 EKLKNKLEEN 249
>gi|358396694|gb|EHK46075.1| hypothetical protein TRIATDRAFT_292263 [Trichoderma atroviride IMI
206040]
Length = 1456
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 126/295 (42%), Gaps = 58/295 (19%)
Query: 28 PSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS----TSYQRLEFIGDAALGLAL 83
P+ + V + II Y F+ LL A HSSY YQ+LEF+GDA + + +
Sbjct: 1138 PNAAQRNMVERIAEIIGYRFQCAPLLRSAFKHSSYVYEEKIRRDYQQLEFLGDALIDMVV 1197
Query: 84 SNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV 143
++++ +P+ DP L+ + A +S + L + VK G K + + ++L ++E+
Sbjct: 1198 VDFLYTRFPEADPKWLTEHKMAMVSNQFLGFLCVKLGLSKHLMLATSSLHSLIREYTAEA 1257
Query: 144 SQ-----------EDNTAVYGGSIKA------------------PKVLADIVESIAAAIY 174
+ N A G A PK LAD+VE++ A++
Sbjct: 1258 KEAEEKAKGCRKPHGNKAAAGSDKGASAEAPSVTLDFWAEIQQPPKALADVVEALVGAMF 1317
Query: 175 VDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNR 231
VD + + F ++P ++L PVT+L Q++ + W+ +
Sbjct: 1318 VDSGYSFSVVQDFFAKFIQPYFEDMSLLSSFASNHPVTVLIHALQEDYR---CTQWKLHM 1374
Query: 232 KNI------------------ASVYVDGSFVASASSEQKEI-AKLNAAREALEKL 267
++ ++ + G+ +A A+S + + AKL A+ AL+KL
Sbjct: 1375 ASVPPSTDDAGVAILAESELLCALMIHGNVIAHATSTKSGVTAKLTVAKLALKKL 1429
>gi|205355648|ref|ZP_03222418.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421]
gi|205346425|gb|EDZ33058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421]
Length = 225
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 74/260 (28%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G
Sbjct: 8 LEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 67
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ S V++E+N G +
Sbjct: 68 LSKLRAALVNEKSFAKIANSLNLGDFILMS--------------VAEENN-----GGKEK 108
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ F+ K T+ +L +KN
Sbjct: 109 PSILSDTLEAIIGAIHLEAGFEFAK-------------------------TIALRLIEKN 143
Query: 219 GKQVD----IKHWRKNRKNIA--------------------------SVYVDGSFVASAS 248
Q+D IK ++ + I ++ +DG +A A
Sbjct: 144 FPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAI 203
Query: 249 SEQKEIAKLNAAREALEKLA 268
+ K+ A+ AA+ ALEKL
Sbjct: 204 AGSKKEAQQMAAKIALEKLG 223
>gi|419542137|ref|ZP_14081268.1| ribonuclease III [Campylobacter coli 2548]
gi|380523896|gb|EIA49530.1| ribonuclease III [Campylobacter coli 2548]
Length = 224
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 114/260 (43%), Gaps = 74/260 (28%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G
Sbjct: 7 LEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ SAA +E+N G +
Sbjct: 67 LSKLRAALVNEKSFAKIANSLNLGDFIFMSAA--------------EENN-----GGKEK 107
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ F+ K T+ +L +KN
Sbjct: 108 PSILSDALEAIIGAIHLEAGFEFAK-------------------------TIALRLIEKN 142
Query: 219 GKQVD----IKHWRKNRKNIA--------------------------SVYVDGSFVASAS 248
Q+D IK ++ + I ++ +DG +A A
Sbjct: 143 FPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAI 202
Query: 249 SEQKEIAKLNAAREALEKLA 268
+ K+ A+ AA+ ALEKL
Sbjct: 203 AGSKKEAQQMAAKIALEKLG 222
>gi|291278588|ref|YP_003495423.1| ribonuclease III [Deferribacter desulfuricans SSM1]
gi|290753290|dbj|BAI79667.1| ribonuclease III [Deferribacter desulfuricans SSM1]
Length = 231
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 23/142 (16%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQL 94
+E +I Y FKNK LL EALTHSSY +Y+RLEF+GD+ L L ++ Y+ + Y +
Sbjct: 7 LEELIGYRFKNKSLLLEALTHSSYAYEKKLKRNYERLEFLGDSVLQLIVTEYLVIKYKEF 66
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
G LS R+ +S + ++ +A+K F+ + V GG
Sbjct: 67 KEGVLSKYRSFFVSEDIISEIALKIRLNDFLMLGKGEI------------------VSGG 108
Query: 155 SIKAPKVLADIVESIAAAIYVD 176
K P +LADI ES+ A+Y+D
Sbjct: 109 YTK-PSILADIFESLLGAVYLD 129
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 29/134 (21%)
Query: 234 IASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAA 293
+ +VY+DG + N AR + L + E+ D+ EK I
Sbjct: 123 LGAVYLDGGY--------------NEARRIVLML---------MSELMDEYIEKGIIIDP 159
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFI-TGDEKSRVKDAE 352
K +L ++ +K P YK+ K+EGP HDK F V++ DG FI G K K AE
Sbjct: 160 KTELQKITQQKFGYIPEYKVLKEEGPEHDKVF--TVELKLADGNKFIGVGRNK---KKAE 214
Query: 353 NSAASMMLRALRES 366
AAS L L+++
Sbjct: 215 IDAASKALTFLQDN 228
>gi|169632753|ref|YP_001706489.1| ribonuclease III [Acinetobacter baumannii SDF]
gi|238688259|sp|B0VTM5.1|RNC_ACIBS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|169151545|emb|CAP00312.1| ribonuclease III, ds RNA [Acinetobacter baumannii]
Length = 230
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 102/234 (43%), Gaps = 27/234 (11%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
I Y FK LL+ ALTH S + +Y+RLEF+GD+ LG+ ++NY++ AYP + G+L+ +
Sbjct: 17 IGYQFKQPELLQLALTHRSVSHKYNYERLEFLGDSLLGMIIANYLYHAYPHENEGRLTRM 76
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
RA + E L ++A + + S L G +L
Sbjct: 77 RATLVRQEALGKIATDLQLSRCLILSTGELK-------------------SGGHHRESIL 117
Query: 163 ADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-TLEELQQQPQPVTLLFKLCQKNGKQ 221
AD VE+I AIY+D DL L I P + +E Q P + L + Q K
Sbjct: 118 ADTVEAIIGAIYLD-SSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKP 176
Query: 222 ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
VDI+ ++ VDG + A+ AA E L+ L Q
Sbjct: 177 LPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGASRRFAEQAAAAEILKLLEQ 230
>gi|148544383|ref|YP_001271753.1| ribonuclease III [Lactobacillus reuteri DSM 20016]
gi|184153747|ref|YP_001842088.1| ribonuclease III [Lactobacillus reuteri JCM 1112]
gi|194466493|ref|ZP_03072480.1| Ribonuclease III [Lactobacillus reuteri 100-23]
gi|227363192|ref|ZP_03847326.1| ribonuclease III [Lactobacillus reuteri MM2-3]
gi|325682703|ref|ZP_08162219.1| ribonuclease III [Lactobacillus reuteri MM4-1A]
gi|423335539|ref|ZP_17313314.1| ribonuclease III [Lactobacillus reuteri ATCC 53608]
gi|189043324|sp|A5VKP2.1|RNC_LACRD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|229564353|sp|B2G826.1|RNC_LACRJ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|148531417|gb|ABQ83416.1| RNAse III [Lactobacillus reuteri DSM 20016]
gi|183225091|dbj|BAG25608.1| ribonuclease III [Lactobacillus reuteri JCM 1112]
gi|194453529|gb|EDX42426.1| Ribonuclease III [Lactobacillus reuteri 100-23]
gi|227071798|gb|EEI10087.1| ribonuclease III [Lactobacillus reuteri MM2-3]
gi|324977053|gb|EGC14004.1| ribonuclease III [Lactobacillus reuteri MM4-1A]
gi|337728769|emb|CCC03888.1| ribonuclease III [Lactobacillus reuteri ATCC 53608]
Length = 233
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 119/249 (47%), Gaps = 47/249 (18%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAY 91
Y+ N +F N LL EA T +SY + Y+R+EF+GDA L L +S Y++ +
Sbjct: 8 YLAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVSEYIYKRF 67
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV 151
P+L G+L+ LRAA + + ++ A + F +++R +E A
Sbjct: 68 PELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHG------EEMA----------- 110
Query: 152 YGGSIKAPKVLADIVESIAAAIYVD-----IDFDLQKL--------WMIFRGLLEPIVTL 198
G+ + P +L DI ES A+Y+D ++ +Q++ W F ++ +L
Sbjct: 111 --GARERPGLLCDIFESFIGALYLDQGRPAVEKFVQRVIFPKLDMGW--FDHAVDAKTSL 166
Query: 199 EELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLN 258
+E Q+ + + + L +++G + D ++ N V +G + K+ A++
Sbjct: 167 QEFLQRDGDIAIEYHLVEESGTEND-PEFKVN------VTANGDVIGEGKGSSKKHAEMQ 219
Query: 259 AAREALEKL 267
AA++AL+ +
Sbjct: 220 AAQQALDNM 228
>gi|419659778|ref|ZP_14190291.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-979]
gi|419667284|ref|ZP_14197262.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-10]
gi|380638585|gb|EIB56135.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-979]
gi|380646268|gb|EIB63243.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-10]
Length = 224
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 74/260 (28%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G
Sbjct: 7 LEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ S V++E+N G +
Sbjct: 67 LSKLRAALVNEKSFAKIANSLNLGDFILMS--------------VAEENN-----GGKEK 107
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ F+ K T+ +L +KN
Sbjct: 108 PSILSDTLEAIIGAIHLEAGFEFAK-------------------------TIALRLIEKN 142
Query: 219 GKQVD----IKHWRKNRKNIA--------------------------SVYVDGSFVASAS 248
Q+D IK ++ + I ++ +DG +A A
Sbjct: 143 FPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAI 202
Query: 249 SEQKEIAKLNAAREALEKLA 268
+ K+ A+ AA+ ALEKL
Sbjct: 203 AGSKKEAQQMAAKIALEKLG 222
>gi|194014593|ref|ZP_03053210.1| ribonuclease III [Bacillus pumilus ATCC 7061]
gi|194013619|gb|EDW23184.1| ribonuclease III [Bacillus pumilus ATCC 7061]
Length = 247
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 33/237 (13%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I+ +F+N++LL +A THSSY + +RLEF+GDA L L +S ++F YP +
Sbjct: 25 ISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSE 84
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAA + L +A + F V L K +E G
Sbjct: 85 GDLTKLRAAIVCEPSLVSLAHELSFGDLV------LLGKGEEMT-------------GGR 125
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
K P +LAD+ E+ A+Y+D L+ + + P + + L + Q
Sbjct: 126 KRPALLADVFEAFIGALYLDQ--GLEPVERFLEAYVYPKINDGAFSHVMDFKSQLQEFVQ 183
Query: 217 KNGKQV---DIKHWR---KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
++GK V I H + NR+ A+V + G + + K+ A+ +AA+EAL KL
Sbjct: 184 RDGKGVLEYHILHEKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHAAQEALAKL 240
>gi|373867394|ref|ZP_09603792.1| Ribonuclease III [Sulfurimonas gotlandica GD1]
gi|372469495|gb|EHP29699.1| Ribonuclease III [Sulfurimonas gotlandica GD1]
Length = 226
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 126/257 (49%), Gaps = 56/257 (21%)
Query: 32 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAY 91
M + +EN + Y FK+K+L+ EALTH SY +RLEF+GDA L L + Y+F +
Sbjct: 1 MSTNIEILENTLGYTFKDKQLIIEALTHKSYKQPYDNERLEFLGDAVLDLIVGEYLFTKF 60
Query: 92 PQLDPGQLSLLRAANIST---EKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN 148
+ D G LS +RA+ ++ +KLAR ++ G Y F+ + ++++N
Sbjct: 61 KKSDEGNLSKIRASLVNETGFDKLAR-SLNLGEYIFLSN----------------AEQNN 103
Query: 149 TAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP-------------- 194
GG K+ +L++ E++ AIY++ L + I GL+E
Sbjct: 104 ----GGREKSS-LLSNAFEAVIGAIYLEA--GLSRAGSIAIGLIEKNHKEISLDSLFRDF 156
Query: 195 IVTLEELQQQPQPVTLLFKLCQKNG----KQVDIKHWRKNRKNIASVYVDGSFVASASSE 250
TL+EL Q +T +K+ G K+ ++ +V+++ A AS +
Sbjct: 157 KTTLQELTQARFGITPEYKVMSSRGPDHKKEFEV-----------AVFIEDKEYARASGK 205
Query: 251 QKEIAKLNAAREALEKL 267
K+IA+ +A++A+E L
Sbjct: 206 SKKIAQQESAKQAVELL 222
>gi|154686009|ref|YP_001421170.1| ribonuclease III [Bacillus amyloliquefaciens FZB42]
gi|429505144|ref|YP_007186328.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|189043290|sp|A7Z4L3.1|RNC_BACA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|154351860|gb|ABS73939.1| Rnc [Bacillus amyloliquefaciens FZB42]
gi|429486734|gb|AFZ90658.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 249
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I+ +F+N++LL +A THSSY + +RLEF+GDA L L +S ++F YP +
Sbjct: 27 ISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSE 86
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAA + L +A + F V L K +E G
Sbjct: 87 GDLTKLRAAIVCEPSLVSLAHELSFGDLV------LLGKGEEMT-------------GGR 127
Query: 157 KAPKVLADIVESIAAAIYVDIDFD-LQKLWMI----------FRGLLEPIVTLEELQQQP 205
K P +LAD+ E+ A+Y+D D +Q+ + F +++ L+E Q+
Sbjct: 128 KRPALLADVFEAFIGALYLDQGLDPVQQFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRD 187
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+L +K+ + G NR+ A V + G + + K+ A+ +AA+EAL
Sbjct: 188 GKGSLEYKILNEKGPA-------HNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALA 240
Query: 266 KL 267
K+
Sbjct: 241 KM 242
>gi|323489554|ref|ZP_08094781.1| ribonuclease 3 [Planococcus donghaensis MPA1U2]
gi|323396685|gb|EGA89504.1| ribonuclease 3 [Planococcus donghaensis MPA1U2]
Length = 251
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 97/194 (50%), Gaps = 36/194 (18%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+N FK LL +A THSSY + T +RLEF+GDA L L++S+Y+++ YP++
Sbjct: 30 LNITFKKPTLLYQAFTHSSYVNEHRRKQFTDNERLEFLGDAVLELSVSHYLYMKYPEMSE 89
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRAA + L A + GF K++ L K +E GG
Sbjct: 90 GELTKLRAAIVCEPSLVLFANELGFGKYI------LLGKGEELT------------GGRT 131
Query: 157 KAPKVLADIVESIAAAIYVDIDFD--LQKLWMI---------FRGLLEPIVTLEELQQQP 205
+ P +LAD+ ES A+Y+D + + L M+ F +++ L+EL QQ
Sbjct: 132 R-PALLADVFESYIGALYLDQGLEPVVSFLEMVLFPKVDIGAFSHVMDYKSQLQELVQQK 190
Query: 206 QPVTLLFKLCQKNG 219
TL +++ + G
Sbjct: 191 NTGTLSYEIIDEIG 204
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTD-GVLFITGDEKSRVKDAE 352
K +L EL +K SY+I + GP+H + F++ V +A + GV G+ +S+ K+AE
Sbjct: 180 KSQLQELVQQKNTGTLSYEIIDEIGPAHSRVFVTRVSLADRELGV----GNGRSK-KEAE 234
Query: 353 NSAASMMLRALRES 366
AA + +R L+E+
Sbjct: 235 QQAAQLAIRKLQEA 248
>gi|227544367|ref|ZP_03974416.1| ribonuclease III [Lactobacillus reuteri CF48-3A]
gi|338202522|ref|YP_004648667.1| ribonuclease III [Lactobacillus reuteri SD2112]
gi|227185630|gb|EEI65701.1| ribonuclease III [Lactobacillus reuteri CF48-3A]
gi|336447762|gb|AEI56377.1| ribonuclease III [Lactobacillus reuteri SD2112]
Length = 233
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 119/249 (47%), Gaps = 47/249 (18%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAY 91
Y+ N +F N LL EA T +SY + Y+R+EF+GDA L L +S Y++ +
Sbjct: 8 YLAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVSEYIYKRF 67
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV 151
P+L G+L+ LRAA + + ++ A + F +++R +E A
Sbjct: 68 PELPQGKLTRLRAAMVCEDSFSKFAKECHFDQYIRLGHG------EEMA----------- 110
Query: 152 YGGSIKAPKVLADIVESIAAAIYVD-----IDFDLQKL--------WMIFRGLLEPIVTL 198
G+ + P +L DI ES A+Y+D ++ +Q++ W F ++ +L
Sbjct: 111 --GARERPGLLCDIFESFIGALYLDQGRPAVEKFVQRVIFPKLDMGW--FDHAVDAKTSL 166
Query: 199 EELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLN 258
+E Q+ + + + L +++G + D ++ N V +G + K+ A++
Sbjct: 167 QEFLQRDGDIAIEYHLVEESGTEND-PEFKVN------VTANGDVIGEGKGSSKKHAEMQ 219
Query: 259 AAREALEKL 267
AA++AL+ +
Sbjct: 220 AAQQALDNM 228
>gi|406589966|ref|ZP_11064377.1| ribonuclease III, partial [Enterococcus sp. GMD1E]
gi|404470038|gb|EKA14718.1| ribonuclease III, partial [Enterococcus sp. GMD1E]
Length = 220
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 45/229 (19%)
Query: 44 NYN--FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
NYN F + LLE+A THSSY + + +RLEF+GDA L L +S Y+F YP L
Sbjct: 4 NYNIVFHDLNLLEQAFTHSSYVNEHRNLQLSDNERLEFLGDAVLELMVSQYLFRLYPHLP 63
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
G+L+ RAA + + L++ A + F ++V E+N+ GG
Sbjct: 64 EGKLTKTRAAIVREDSLSKFAKECHFDQYVLLGKG---------------EENS---GGR 105
Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQ 204
+ P +L D+ E+ A+Y+D FD ++ F ++ L+E+ Q+
Sbjct: 106 TR-PALLCDLFEAFLGALYLDQGFDTTHAFIEKVIFPKVKAGAFSHEMDHKTKLQEVLQK 164
Query: 205 PQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKE 253
V++ ++L + G + W VYVD + + + K+
Sbjct: 165 SGDVSIEYRLINEEGPAHERVFW-------IEVYVDDQLIGTGQGKSKK 206
>gi|148925776|ref|ZP_01809464.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486]
gi|145845786|gb|EDK22877.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486]
Length = 229
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 74/260 (28%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G
Sbjct: 12 LEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 71
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ S V++E+N G +
Sbjct: 72 LSKLRAALVNEKSFAKIANSLNLGDFILMS--------------VAEENN-----GGKEK 112
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ F+ K T+ +L +KN
Sbjct: 113 PSILSDALEAIIGAIHLEAGFEFAK-------------------------TIALRLIEKN 147
Query: 219 GKQVD----IKHWRKNRKNIA--------------------------SVYVDGSFVASAS 248
Q+D IK ++ + I ++ +DG +A A
Sbjct: 148 FPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAI 207
Query: 249 SEQKEIAKLNAAREALEKLA 268
+ K+ A+ AA+ ALEKL
Sbjct: 208 AGSKKEAQQMAAKIALEKLG 227
>gi|260551498|ref|ZP_05825682.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624]
gi|424054689|ref|ZP_17792213.1| ribonuclease 3 [Acinetobacter nosocomialis Ab22222]
gi|260405492|gb|EEW98985.1| dsRNA-specific ribonuclease [Acinetobacter sp. RUH2624]
gi|407439438|gb|EKF45963.1| ribonuclease 3 [Acinetobacter nosocomialis Ab22222]
Length = 230
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 19/134 (14%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
I Y FK LL+ ALTH S + +Y+RLEF+GD+ LG+ ++NY++ AYP + G+L+ +
Sbjct: 17 IGYQFKQPELLQLALTHRSVSHKYNYERLEFLGDSLLGMIIANYLYHAYPHENEGRLTRM 76
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
RA + E L ++A + + S L G +L
Sbjct: 77 RATLVRQEALGKIATDLQLSRCLILSTGELK-------------------SGGHHRESIL 117
Query: 163 ADIVESIAAAIYVD 176
AD VE+I AIY+D
Sbjct: 118 ADTVEAIIGAIYLD 131
>gi|116873240|ref|YP_850021.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
gi|123466444|sp|A0AJR0.1|RNC_LISW6 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|116742118|emb|CAK21242.1| ribonuclease III [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 229
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 35/240 (14%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+ ++F++ LL++A THSSY + +RLEF+GDA L L +SNY+F YP +
Sbjct: 11 VGFDFQDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPDMAE 70
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G ++ +RAA + L A F K++R K +E A GG
Sbjct: 71 GHMTKMRAAIVCEPSLVEFAEAIHFSKYIRLG------KGEEKA------------GGRT 112
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
+ P +LAD+ ES A+Y+D D K+ ++ P + E Q T L ++ Q
Sbjct: 113 R-PALLADVFESFIGALYLDNGID--KVVTFLERVIFPKIDAGEYLQTVDYKTQLQEIVQ 169
Query: 217 KNGKQVDIKH-------WRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
++ + V I++ N+ A V V+G + S K+ A+ +AA+ A+ +L
Sbjct: 170 RD-RDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFAINQLTH 228
>gi|299769157|ref|YP_003731183.1| ribonuclease III [Acinetobacter oleivorans DR1]
gi|298699245|gb|ADI89810.1| ribonuclease III [Acinetobacter oleivorans DR1]
Length = 230
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 19/134 (14%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
I Y FK LL+ ALTH S + +Y+RLEF+GD+ LG+ ++NY++ AYP + G+L+ +
Sbjct: 17 IGYQFKQLELLQLALTHRSVSHKYNYERLEFLGDSLLGMIIANYLYHAYPNENEGRLTRM 76
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
RA + E L ++A + + S L G +L
Sbjct: 77 RATLVRQEALGKIATDLQLSRCLILSTGELKS-------------------GGHHRESIL 117
Query: 163 ADIVESIAAAIYVD 176
AD VE+I AIY+D
Sbjct: 118 ADTVEAIIGAIYID 131
>gi|47097388|ref|ZP_00234939.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217964043|ref|YP_002349721.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|254829200|ref|ZP_05233887.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|254912363|ref|ZP_05262375.1| ribonuclease III [Listeria monocytogenes J2818]
gi|254936690|ref|ZP_05268387.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290893065|ref|ZP_06556054.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|386008577|ref|YP_005926855.1| ribonuclease III [Listeria monocytogenes L99]
gi|386027184|ref|YP_005947960.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|386047457|ref|YP_005965789.1| ribonuclease III [Listeria monocytogenes J0161]
gi|404408249|ref|YP_006690964.1| ribonuclease III [Listeria monocytogenes SLCC2376]
gi|404413884|ref|YP_006699471.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|422410046|ref|ZP_16487007.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|422809886|ref|ZP_16858297.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|254807893|sp|B8DDU8.1|RNC_LISMH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|47014236|gb|EAL05218.1| ribonuclease III [Listeria monocytogenes str. 1/2a F6854]
gi|217333313|gb|ACK39107.1| ribonuclease III [Listeria monocytogenes HCC23]
gi|258601611|gb|EEW14936.1| ribonuclease III [Listeria monocytogenes FSL N3-165]
gi|258609286|gb|EEW21894.1| ribonuclease III [Listeria monocytogenes F6900]
gi|290557425|gb|EFD90950.1| ribonuclease III [Listeria monocytogenes FSL J2-071]
gi|293590344|gb|EFF98678.1| ribonuclease III [Listeria monocytogenes J2818]
gi|307571387|emb|CAR84566.1| ribonuclease III [Listeria monocytogenes L99]
gi|313608181|gb|EFR84216.1| ribonuclease III [Listeria monocytogenes FSL F2-208]
gi|336023765|gb|AEH92902.1| putative ribonuclease III [Listeria monocytogenes M7]
gi|345534448|gb|AEO03889.1| ribonuclease III [Listeria monocytogenes J0161]
gi|378751550|gb|EHY62138.1| Ribonuclease III [Listeria monocytogenes FSL J1-208]
gi|404239583|emb|CBY60984.1| ribonuclease III [Listeria monocytogenes SLCC7179]
gi|404242398|emb|CBY63798.1| ribonuclease III [Listeria monocytogenes SLCC2376]
Length = 229
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 113/246 (45%), Gaps = 47/246 (19%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+ ++FK+ LL++A THSSY + +RLEF+GDA L L +S+Y+F YP +
Sbjct: 11 VGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSDYLFNKYPDMAE 70
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G ++ +RAA + L A F K+VR K +E A GG
Sbjct: 71 GHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG------KGEEKA------------GGRT 112
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQ 203
+ P +LAD+ ES A+Y+D D K+ ++ P + L+E+ Q
Sbjct: 113 R-PALLADVFESFIGALYLDNGID--KVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQ 169
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
+ + V + + + + G N+ A V V+G + S K+ A+ +AA+ A
Sbjct: 170 RDRDVLIEYDILGETGPA-------HNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFA 222
Query: 264 LEKLAQ 269
+ +L
Sbjct: 223 INQLTH 228
>gi|284048724|ref|YP_003399063.1| ribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952945|gb|ADB47748.1| ribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 234
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 112/247 (45%), Gaps = 51/247 (20%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTS-------YQRLEFIGDAALGLALSNYVFLAYPQLD 95
+ K+ LL+ ALTH+SY + QRLEF+GD+ L L +S +++ PQ+D
Sbjct: 16 LGMEMKDLHLLDMALTHTSYAYESKKNPRPQHNQRLEFLGDSVLSLVVSTHIYKTCPQMD 75
Query: 96 PGQLSLLRAANISTEKLARVAVKH--GFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
G+LS LRA + E LA++A ++ G + + LD E+N
Sbjct: 76 EGELSKLRAFLVCEETLAQLATENHLGDHLLLGKGEINLDG-----------EEN----- 119
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI-------------VTLEE 200
P +LAD ES+ A Y+D F + ++ R L+ I L+E
Sbjct: 120 -----PSILADAFESVLGAYYLDQGF-ARVTGLLNRLLISRIPELTADGIDRDYKTRLQE 173
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
+ Q+ P +L+ QV + NR + V V+G+ + K+ A+ AA
Sbjct: 174 VVQKDGPAEILY-------DQVSAEGPSHNRTFVMRVLVNGNELGKGRGRTKKEAEQRAA 226
Query: 261 REALEKL 267
REAL+ L
Sbjct: 227 REALKAL 233
>gi|119713601|gb|ABL97652.1| ribonuclease III [uncultured marine bacterium EB0_39H12]
Length = 218
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 111/232 (47%), Gaps = 36/232 (15%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
+ Y+F+++ L + ALTH S + S + +RLEF+GDA L L +S +F Y L G+L+
Sbjct: 9 LEYSFQDEELFQLALTHKSLS-SHNNERLEFLGDAILNLYVSERLFNTYGNLKEGKLTRF 67
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
+A+ +S E L RVA+ ++ G S++ +L
Sbjct: 68 KASIVSRENLHRVAINLELSNHIKLGK-----------------------GESLQGNSIL 104
Query: 163 ADIVESIAAAIYVDIDFDLQK--LWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGK 220
+++E++ AI++D D+ K L IF+ +V EEL+ P + L +L QK +
Sbjct: 105 GNVLEALIGAIFLDSDYSETKNVLDNIFKDDFLKLVEEEELK---DPKSTLQELIQKQYQ 161
Query: 221 QV-------DIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+ I ++N+ + V+G+ V ++ A+LNAA LE
Sbjct: 162 SLPIYSLNEQISDKKENQFEVTCSVVEGNLVTQGKGNTRKGAELNAASNMLE 213
>gi|365925213|ref|ZP_09447976.1| ribonuclease III [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420266512|ref|ZP_14768974.1| ribonuclease III [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394425208|gb|EJE98208.1| ribonuclease III [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 229
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 112/248 (45%), Gaps = 47/248 (18%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYP 92
++N +FK LL+EA TH+SY + Y+R+EF+GDA + L +S Y++ YP
Sbjct: 9 LKNDFEIDFKRPELLDEAFTHASYVNEHPKEHLKYYERIEFLGDAVMQLCVSEYLYRRYP 68
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ G+LS LRAA + + ++ A + F +++R K +E A A +
Sbjct: 69 GMSEGKLSRLRAAMVCEDSFSKFAKECNFDEYIRLG------KGEEKANARQR------- 115
Query: 153 GGSIKAPKVLADIVESIAAAIYVD------------IDF-DLQKLWMIFRGLLEPIVTLE 199
P +L DI E+ A+Y D + F L W F LL+ L+
Sbjct: 116 ------PALLCDIFEAFIGALYQDQGKKAVEEFIAKVVFPKLDLGW--FDHLLDHKTELQ 167
Query: 200 ELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNA 259
EL Q+ VT+ + G + D + +V DG + + S K+ A+ A
Sbjct: 168 ELLQEKGEVTITYDEVADLGPEHD-------KMYTMAVSADGKVLGTGSGHSKKEAEQVA 220
Query: 260 AREALEKL 267
A AL+ L
Sbjct: 221 ANAALKSL 228
>gi|83772763|dbj|BAE62891.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391869364|gb|EIT78563.1| dsRNA-specific nuclease Dicer [Aspergillus oryzae 3.042]
Length = 1374
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 37/179 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQL 94
VE + Y FK RLL A TH SY + + YQRLEF+GD+ L + + +F YP
Sbjct: 1156 VEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPDK 1215
Query: 95 DPGQLS------------------LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKV 136
DP L+ L+ A +S + L +AVK G + +RH + L ++
Sbjct: 1216 DPQWLTEHKVSVRLFVSTKHLLTITLQMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQI 1275
Query: 137 KEFAEAVSQEDNTAVYGGSI-------------KAPKVLADIVESIAAAIYVDIDFDLQ 182
+AE + +N + G++ + P L D+VE+ A +VD DF +
Sbjct: 1276 THYAEEIQAAENES--QGAVDYWLVTKDPPKVRRCPGCLPDMVEAYLGAAFVDSDFQFR 1332
>gi|331703478|ref|YP_004400165.1| ribonuclease III [Mycoplasma mycoides subsp. capri LC str. 95010]
gi|328802033|emb|CBW54187.1| Ribonuclease III [Mycoplasma mycoides subsp. capri LC str. 95010]
Length = 232
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 76/148 (51%), Gaps = 25/148 (16%)
Query: 45 YNFK--NKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
YN K N++L EALTH+SY + SYQRLEF+GDA L + +S ++F Y +L G+
Sbjct: 10 YNIKINNEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFFNYSKLSEGE 69
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
L+ LRA+ + E L RVA V+ E +++ +
Sbjct: 70 LTRLRASTVREETLFRVAKDINLGALVKLGHG----------EYITK---------GYEK 110
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWM 186
P +LAD+ E++ AAIY+D D W+
Sbjct: 111 PSILADVFEALTAAIYLDQKEDGLVTWL 138
>gi|256384023|gb|ACU78593.1| ribonuclease III [Mycoplasma mycoides subsp. capri str. GM12]
gi|256384855|gb|ACU79424.1| ribonuclease III [Mycoplasma mycoides subsp. capri str. GM12]
gi|296455406|gb|ADH21641.1| ribonuclease III [synthetic Mycoplasma mycoides JCVI-syn1.0]
Length = 232
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 76/148 (51%), Gaps = 25/148 (16%)
Query: 45 YNFK--NKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
YN K N++L EALTH+SY + SYQRLEF+GDA L + +S ++F Y +L G+
Sbjct: 10 YNIKINNEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFFNYSKLSEGE 69
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
L+ LRA+ + E L RVA V+ E +++ +
Sbjct: 70 LTRLRASTVREETLFRVAKDINLGALVKLGHG----------EYITK---------GYEK 110
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWM 186
P +LAD+ E++ AAIY+D D W+
Sbjct: 111 PSILADVFEALTAAIYLDQKEDGLVTWL 138
>gi|300854469|ref|YP_003779453.1| dsRNA-specific ribonuclease [Clostridium ljungdahlii DSM 13528]
gi|300434584|gb|ADK14351.1| dsRNA-specific ribonuclease [Clostridium ljungdahlii DSM 13528]
Length = 235
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 118/254 (46%), Gaps = 44/254 (17%)
Query: 32 MEDAVF--YVENIINYNFKNKRLLEEALTHSSYTDSTSY----QRLEFIGDAALGLALSN 85
ME+ F +E N +F NK ++E ALTHSSY + +RLEF+GD+ L L +S
Sbjct: 1 MEEIGFIELLEKKFNMSFSNKEIIEVALTHSSYANGRKNIKFNERLEFLGDSVLQLCISE 60
Query: 86 YVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ 145
Y+FL Y G+L+ R+ + L VA K K+++ S E ++
Sbjct: 61 YLFLKYKSKPEGELTKKRSLIVCENSLYHVAKKWNLGKYIKMSK----------GEEIT- 109
Query: 146 EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIV------- 196
G + +LAD VE+I AAIY++ ++ ++I F+ ++E +
Sbjct: 110 --------GGRERTSILADCVEAIIAAIYLNFGYENTGKFIIENFQDIIENAIKNRIIMD 161
Query: 197 ---TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKE 253
L+E Q+ V++ + L + G RK V + + + S K+
Sbjct: 162 YKTKLQETLQKDGDVSIEYNLVKYEGPP-------HRRKFYTEVCTEKNVLGSGVGYSKK 214
Query: 254 IAKLNAAREALEKL 267
++ NAA++AL KL
Sbjct: 215 ESEQNAAQDALMKL 228
>gi|157692273|ref|YP_001486735.1| ribonuclease III [Bacillus pumilus SAFR-032]
gi|157681031|gb|ABV62175.1| ribonuclease III [Bacillus pumilus SAFR-032]
Length = 247
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 33/237 (13%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I+ +F+N++LL +A THSSY + +RLEF+GDA L L +S ++F YP +
Sbjct: 25 ISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSE 84
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAA + L +A + F V L K +E G
Sbjct: 85 GDLTKLRAAIVCEPSLVSLAHELSFGDLV------LLGKGEEMT-------------GGR 125
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
K P +LAD+ E+ A+Y+D L+ + + P + + L + Q
Sbjct: 126 KRPALLADVFEAFIGALYLDQ--GLEPVERFLEAYVYPKINDGAFSHVMDFKSQLQEFVQ 183
Query: 217 KNGKQV---DIKHWR---KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
++GK V I H + NR+ A+V + G + + K+ A+ +AA+EAL KL
Sbjct: 184 RDGKGVLEYRILHEKGPAHNREFEANVSLRGEVLGIGNGRSKKEAEQHAAQEALAKL 240
>gi|402299450|ref|ZP_10819056.1| ribonuclease III [Bacillus alcalophilus ATCC 27647]
gi|401725368|gb|EJS98656.1| ribonuclease III [Bacillus alcalophilus ATCC 27647]
Length = 263
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 122/244 (50%), Gaps = 43/244 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDST---SYQ---RLEFIGDAALGLALSNYVFLAYPQLDP 96
I + F+NK+LL +A THSSY + ++Q RLEF+GDA L LA+S ++F + +
Sbjct: 42 IGFTFENKKLLIQAFTHSSYVNEHRIYTFQDNERLEFLGDAVLELAVSQFLFKKFKAMSE 101
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G ++ LRA+ + LA+ A + F + V L K +E + GG +
Sbjct: 102 GDMTKLRASIVCEPSLAKFAEELQFGQLV------LLGKGEE------------ITGGRL 143
Query: 157 KAPKVLADIVESIAAAIYVD------IDFDLQKLW-----MIFRGLLEPIVTLEELQQQP 205
+ P +LAD+ E+ A+Y+D +F Q ++ F +++ L+EL Q+
Sbjct: 144 R-PALLADVFEAFIGALYLDQGIDAVFEFLAQTIYPKVNEGAFSHMMDFKSQLQELIQRD 202
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+ + + Q+ G NR+ ++ V ++ + + K+ A+ +AA++AL
Sbjct: 203 NLGQIQYIIVQERGPA-------HNREFVSEVQLNTQALGVGTGRSKKEAEQHAAQQALM 255
Query: 266 KLAQ 269
KL+Q
Sbjct: 256 KLSQ 259
>gi|334135564|ref|ZP_08509048.1| ribonuclease III [Paenibacillus sp. HGF7]
gi|333606900|gb|EGL18230.1| ribonuclease III [Paenibacillus sp. HGF7]
Length = 233
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 109/242 (45%), Gaps = 43/242 (17%)
Query: 47 FKNKRLLEEALTHSSYTDS---TSYQ---RLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
F++ LL +A THSSY + +YQ RLEF+GDA L L +S Y++ YP G+L+
Sbjct: 16 FQDLDLLRQAFTHSSYVNEHRMANYQDNERLEFLGDAVLELTVSEYLYFKYPHRTEGELT 75
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
LRA+ + L A K F +V+ E+ T G P
Sbjct: 76 KLRASIVCEPSLVNFAEKLNFGSYVQLGKG---------------EEMT----GGRSRPA 116
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWM---IF-----RGLLEPI---VTLEELQQQPQPVT 209
+LAD+ ES A+Y+D + KL++ +F G L I L+E Q
Sbjct: 117 LLADVFESFIGALYLDQGLEAVKLFLQQHVFPYVSAEGKLLVIDYKTQLQEHTQHHNMGA 176
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
L +++ ++ G R+ +A VY+D + + K+ A+ AA +AL KL
Sbjct: 177 LEYRIVEERGPA-------HEREFVAEVYMDAKQLGKGAGRSKKEAEQQAASQALTKLNV 229
Query: 270 SM 271
M
Sbjct: 230 PM 231
>gi|42561014|ref|NP_975465.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str. PG1]
gi|81400621|sp|Q6MTC9.1|RNC_MYCMS RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|42492511|emb|CAE77107.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str. PG1]
gi|301321343|gb|ADK69986.1| ribonuclease III [Mycoplasma mycoides subsp. mycoides SC str.
Gladysdale]
Length = 232
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 73/148 (49%), Gaps = 25/148 (16%)
Query: 45 YNFK--NKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
YN K N++L EALTH+SY + SYQRLEF+GDA L + +S ++F Y +L G+
Sbjct: 10 YNIKINNEKLFNEALTHNSYANEHKLKYSYQRLEFLGDAILQMYVSRFLFFNYSKLSEGE 69
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
L+ LRA+ + E L RVA V+ K E
Sbjct: 70 LTRLRASTVREETLFRVAKDINLGALVKLGHGEYITKGYE-------------------K 110
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWM 186
P +LAD+ E++ AAIY+D D W+
Sbjct: 111 PSILADVFEALTAAIYLDQKEDGLVTWL 138
>gi|212529276|ref|XP_002144795.1| RNA helicase/RNAse III, putative [Talaromyces marneffei ATCC 18224]
gi|210074193|gb|EEA28280.1| RNA helicase/RNAse III, putative [Talaromyces marneffei ATCC 18224]
Length = 1497
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 131/304 (43%), Gaps = 44/304 (14%)
Query: 26 SLPSPEMEDAVFYVENIIN-------YNFKNKRLLEEALTHSSYTDSTS----YQRLEFI 74
SLPS ++++A + +++ N Y FK RLL A TH SY + S YQRLEF+
Sbjct: 1194 SLPSYQIKEANGFEKDLANQIDKKLGYRFKYPRLLRSAFTHPSYPTAWSIVPCYQRLEFL 1253
Query: 75 GDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDD 134
GD+ L + ++ +P DP L+ + A +S + L +AV+ + +++ + L
Sbjct: 1254 GDSLLDMVCIENLYERFPDRDPQWLTEHKMAMVSNKFLGSLAVRLDLHTHLQYFSNPLQG 1313
Query: 135 KVKEFAE----AVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRG 190
++ + E A + + PK L+D+VE+ AI+VD FD + +
Sbjct: 1314 RIAQAVEDAQLAYESHQSVDFWIMIEDPPKCLSDMVEAYLGAIFVDSGFDFGVIESFYAK 1373
Query: 191 LLEPI---VTLEELQQQPQPVTLL-------FKLCQKNGKQVDIKHWRKNRKNI-ASVYV 239
++P ++L + P T L F Q K +I + A+V V
Sbjct: 1374 HIKPYFEDMSLYDTFANKHPTTFLHGKLTDDFGCIQYTLKAAEIPSVDGAPTVVLAAVLV 1433
Query: 240 DGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHE 299
+A A++ AK+ A+ AL+ L E EA +QK H
Sbjct: 1434 HDVDLAQATASSGRYAKIKASEVALKNL------------------EGLSAEAFRQKYHC 1475
Query: 300 LCGK 303
C +
Sbjct: 1476 QCSR 1479
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F+ P L + R I L A + Y+++R
Sbjct: 1047 NYERLEFLGDCFLKMATSISLFVGSPNDQEFDLHVNRMTLICNRNLFNTAKERKIYEYIR 1106
Query: 127 HSAAALDDKVKE---FAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAA 172
+ + E + ED + + + K +AD+ E++ A
Sbjct: 1107 SKGFSRRNWYPEGMKLLRGKANEDKASTHTHGL-GEKTIADVCEALIGA 1154
>gi|154500966|ref|ZP_02039004.1| hypothetical protein BACCAP_04652 [Bacteroides capillosus ATCC
29799]
gi|150269990|gb|EDM97509.1| ribonuclease III [Pseudoflavonifractor capillosus ATCC 29799]
Length = 223
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 34/196 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY------TDSTSYQRLEFIGDAALGLALSNYVFLAYP 92
+E + Y F+N+ LLE ALTHSSY T + S +RLEF+GD+ LG+ ++Y++ +P
Sbjct: 4 LEEKLGYTFQNRALLENALTHSSYANENKHTGAQSNERLEFLGDSVLGMVTADYLYRVHP 63
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
L G L+ RAA + L VA + +++ ED
Sbjct: 64 DLPEGDLTRTRAALVCEGSLVEVAQQLELGTYLKLGKG---------------EDA---- 104
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFD-LQKLWMIF--------RGLLEPIVTLEELQQ 203
GG + P ++AD VE++ AA+Y+D +K+ F G + L+EL Q
Sbjct: 105 GGGRERPSIVADAVEAVLAAVYLDGGIGSARKIIQRFILDREEEKSGSRDYKTALQELVQ 164
Query: 204 QPQPVTLLFKLCQKNG 219
+ L ++L G
Sbjct: 165 RESGQVLAYRLVGSTG 180
>gi|257784655|ref|YP_003179872.1| ribonuclease III [Atopobium parvulum DSM 20469]
gi|257473162|gb|ACV51281.1| ribonuclease III [Atopobium parvulum DSM 20469]
Length = 243
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 116/263 (44%), Gaps = 44/263 (16%)
Query: 31 EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNY 86
++ + V E I + F NK L+E ALTH S + S SY+RLEF+GD+ LG ++
Sbjct: 2 KLHERVAAAEAICGHTFINKDLIEAALTHPSAVEGKPVSASYERLEFLGDSILGAIIATE 61
Query: 87 VFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE 146
+F YP +D GQL+ L+ + +S L+ V+ G + +S++
Sbjct: 62 LFERYPDMDEGQLTRLKISLVSGHTLSIVSDTLGVSPLI--------------VMGISEK 107
Query: 147 DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGL------------LEP 194
G L ++ ESI A+Y+D F+ + ++I R L + P
Sbjct: 108 GT-----GKRGMKSALENVYESIVGALYLDAGFEPTRDFVI-RTLGPHISPTLAVRSVSP 161
Query: 195 IVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEI 254
L+E Q T +KL ++G A V+VDG V K+
Sbjct: 162 KSRLQEAVQAQGKATPEYKLIGESGPA-------HTPTFTAVVFVDGLKVGRGQGPSKKA 214
Query: 255 AKLNAAREALEKLA-QSMPVNCD 276
A+ AA++AL +L P++ D
Sbjct: 215 AESEAAQDALVRLGVDDAPLDAD 237
>gi|153951733|ref|YP_001398912.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
gi|189043301|sp|A7H5Y2.1|RNC_CAMJD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|152939179|gb|ABS43920.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
Length = 225
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 74/260 (28%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G
Sbjct: 7 LEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFTKDAEGD 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ S V++E+N G +
Sbjct: 67 LSKLRAALVNEKSFAKIANSLNLGDFIFMS--------------VAEENN-----GGKEK 107
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ F+ K T+ +L +KN
Sbjct: 108 PSILSDALEAIIGAIHLEAGFEFAK-------------------------TIALRLMEKN 142
Query: 219 GKQVD----IKHWRKNRKNIA--------------------------SVYVDGSFVASAS 248
Q+D IK ++ + I ++ +DG +A A
Sbjct: 143 FPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAI 202
Query: 249 SEQKEIAKLNAAREALEKLA 268
+ K+ A+ AA+ ALEKL
Sbjct: 203 AGSKKEAQQMAAKIALEKLG 222
>gi|86149260|ref|ZP_01067491.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6]
gi|88596211|ref|ZP_01099448.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
gi|218563224|ref|YP_002345004.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168 =
ATCC 700819]
gi|317511632|ref|ZP_07968930.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 305]
gi|384448848|ref|YP_005656899.1| ribonuclease III [Campylobacter jejuni subsp. jejuni IA3902]
gi|403056346|ref|YP_006633751.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC
11168-BN148]
gi|407942970|ref|YP_006858617.1| ribonuclease III [Campylobacter jejuni subsp. jejuni PT14]
gi|415731373|ref|ZP_11473447.1| ribonuclease III [Campylobacter jejuni subsp. jejuni DFVF1099]
gi|419620986|ref|ZP_14154381.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51494]
gi|419623819|ref|ZP_14156940.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23218]
gi|419625061|ref|ZP_14158085.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23223]
gi|419628386|ref|ZP_14161245.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23263]
gi|419629909|ref|ZP_14162621.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 60004]
gi|419630965|ref|ZP_14163565.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23264]
gi|419633703|ref|ZP_14166131.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23269]
gi|419635954|ref|ZP_14168241.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 55037]
gi|419637815|ref|ZP_14169964.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9879]
gi|419639421|ref|ZP_14171450.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 86605]
gi|419645376|ref|ZP_14176925.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9081]
gi|419647079|ref|ZP_14178522.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 53161]
gi|419649109|ref|ZP_14180411.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9217]
gi|419650140|ref|ZP_14181366.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-1025]
gi|419651560|ref|ZP_14182656.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-894]
gi|419656399|ref|ZP_14187201.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-988]
gi|419658399|ref|ZP_14189029.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-1]
gi|419661780|ref|ZP_14192099.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-831]
gi|419663951|ref|ZP_14194134.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-4]
gi|419671772|ref|ZP_14201414.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-14]
gi|419673128|ref|ZP_14202607.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51037]
gi|419675820|ref|ZP_14205079.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 110-21]
gi|419677786|ref|ZP_14206919.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87330]
gi|419679551|ref|ZP_14208544.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87459]
gi|419681434|ref|ZP_14210268.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 140-16]
gi|419684794|ref|ZP_14213374.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1577]
gi|419687924|ref|ZP_14216256.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1854]
gi|419690916|ref|ZP_14219105.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1893]
gi|419696155|ref|ZP_14224025.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23210]
gi|424849058|ref|ZP_18273527.1| ribonuclease III [Campylobacter jejuni subsp. jejuni D2600]
gi|22654076|sp|Q9PM40.1|RNC_CAMJE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|85840042|gb|EAQ57300.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6]
gi|88191052|gb|EAQ95024.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
gi|112360931|emb|CAL35732.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168 =
ATCC 700819]
gi|284926829|gb|ADC29181.1| ribonuclease III [Campylobacter jejuni subsp. jejuni IA3902]
gi|315927617|gb|EFV06948.1| ribonuclease III [Campylobacter jejuni subsp. jejuni DFVF1099]
gi|315928870|gb|EFV08132.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 305]
gi|356487695|gb|EHI17637.1| ribonuclease III [Campylobacter jejuni subsp. jejuni D2600]
gi|380597882|gb|EIB18338.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51494]
gi|380599969|gb|EIB20317.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23218]
gi|380604482|gb|EIB24496.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23263]
gi|380605405|gb|EIB25378.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23223]
gi|380606913|gb|EIB26800.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 60004]
gi|380611214|gb|EIB30771.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 55037]
gi|380611347|gb|EIB30900.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23269]
gi|380611932|gb|EIB31472.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23264]
gi|380614766|gb|EIB34092.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9879]
gi|380616423|gb|EIB35627.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 86605]
gi|380620465|gb|EIB39355.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9081]
gi|380621996|gb|EIB40766.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 53161]
gi|380625526|gb|EIB44108.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9217]
gi|380628846|gb|EIB47133.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-1025]
gi|380631159|gb|EIB49369.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-894]
gi|380633483|gb|EIB51436.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-1]
gi|380635405|gb|EIB53222.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-988]
gi|380639431|gb|EIB56924.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-831]
gi|380641974|gb|EIB59278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-4]
gi|380648961|gb|EIB65749.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-14]
gi|380651181|gb|EIB67749.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 110-21]
gi|380653448|gb|EIB69868.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87330]
gi|380654393|gb|EIB70755.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51037]
gi|380657044|gb|EIB73153.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87459]
gi|380658109|gb|EIB74142.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 140-16]
gi|380666172|gb|EIB81720.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1577]
gi|380666470|gb|EIB82007.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1854]
gi|380668031|gb|EIB83415.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1893]
gi|380675351|gb|EIB90258.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23210]
gi|401781998|emb|CCK67709.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC
11168-BN148]
gi|407906808|gb|AFU43637.1| ribonuclease III [Campylobacter jejuni subsp. jejuni PT14]
Length = 224
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 74/260 (28%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G
Sbjct: 7 LEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ S V++E+N G +
Sbjct: 67 LSKLRAALVNEKSFAKIANSLNLGDFILMS--------------VAEENN-----GGKEK 107
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ F+ K T+ +L +KN
Sbjct: 108 PSILSDALEAIIGAIHLEAGFEFAK-------------------------TIALRLIEKN 142
Query: 219 GKQVD----IKHWRKNRKNIA--------------------------SVYVDGSFVASAS 248
Q+D IK ++ + I ++ +DG +A A
Sbjct: 143 FPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAI 202
Query: 249 SEQKEIAKLNAAREALEKLA 268
+ K+ A+ AA+ ALEKL
Sbjct: 203 AGSKKEAQQMAAKIALEKLG 222
>gi|57238646|ref|YP_179777.1| ribonuclease III [Campylobacter jejuni RM1221]
gi|384443998|ref|YP_005660250.1| Ribonuclease III [Campylobacter jejuni subsp. jejuni S3]
gi|81353160|sp|Q5HSF8.1|RNC_CAMJR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|57167450|gb|AAW36229.1| ribonuclease III [Campylobacter jejuni RM1221]
gi|315059085|gb|ADT73414.1| Ribonuclease III [Campylobacter jejuni subsp. jejuni S3]
Length = 224
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 74/260 (28%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G
Sbjct: 7 LERSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ S V++E+N G +
Sbjct: 67 LSKLRAALVNEKSFAKIANSLNLGDFIFMS--------------VAEENN-----GGREK 107
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ F+ K T+ +L +KN
Sbjct: 108 PSILSDALEAIIGAIHLEAGFEFTK-------------------------TIALRLIEKN 142
Query: 219 GKQVD----IKHWRKNRKNIA--------------------------SVYVDGSFVASAS 248
Q+D IK ++ + I ++ +DG +A A
Sbjct: 143 FPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAI 202
Query: 249 SEQKEIAKLNAAREALEKLA 268
+ K+ A+ AA+ ALEKL
Sbjct: 203 AGSKKEAQQMAAKIALEKLG 222
>gi|395226011|ref|ZP_10404515.1| ribonuclease III [Thiovulum sp. ES]
gi|394445821|gb|EJF06693.1| ribonuclease III [Thiovulum sp. ES]
Length = 232
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 20/149 (13%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E I+ Y FK+ L+EEA TH S + ++LEF+GD+ L ++ Y++ Y L+ G+
Sbjct: 9 IEKILGYEFKDPTLIEEAFTHKSSNKPFNNEKLEFVGDSILNFTMAMYLYRKYSNLNEGE 68
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S + L ++A K++ S A +E N+ G IK
Sbjct: 69 LSRLRASLVSKKGLLKIAENLRIGKYLLISEA--------------EEKNS----GRIKK 110
Query: 159 PKVLADIVESIAAAIYVDI-DFDLQKLWM 186
+LAD VESI AAIY+D D DL + ++
Sbjct: 111 S-LLADSVESIIAAIYLDSQDMDLTQQFI 138
>gi|419694651|ref|ZP_14222609.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9872]
gi|380670012|gb|EIB85278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9872]
Length = 224
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 74/260 (28%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G
Sbjct: 7 LEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ S V++E+N G +
Sbjct: 67 LSKLRAALVNEKSFAKIANSLNLGNFIFMS--------------VAEENN-----GGKEK 107
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ F+ K T+ +L +KN
Sbjct: 108 PSILSDALEAIIGAIHLEAGFEFAK-------------------------TIALRLIEKN 142
Query: 219 GKQVD----IKHWRKNRKNIA--------------------------SVYVDGSFVASAS 248
Q+D IK ++ + I ++ +DG +A A
Sbjct: 143 FPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAI 202
Query: 249 SEQKEIAKLNAAREALEKLA 268
+ K+ A+ AA+ ALEKL
Sbjct: 203 AGSKKEAQQMAAKIALEKLG 222
>gi|302335832|ref|YP_003801039.1| RNAse III [Olsenella uli DSM 7084]
gi|301319672|gb|ADK68159.1| RNAse III [Olsenella uli DSM 7084]
Length = 242
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 33/246 (13%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNYVFLAY 91
V VE I+ ++F ++RL+ A+TH S + S SY+RLEF+GD+ LG ++ +F +
Sbjct: 7 VVAVEQIVGHHFSDQRLITSAITHPSAVEGKPVSASYERLEFLGDSILGAMVATDMFERF 66
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV 151
P +D G+L+ L+ + +S + L+ VA G + + F E+ E T
Sbjct: 67 PGMDEGELTRLKISLVSGKTLSEVAGSLGIGELI------------VFGES---ERGTGA 111
Query: 152 YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQP-QPVTL 210
G L ++ E+I A+Y+D F+ ++ R L P + + EL +P P +
Sbjct: 112 RG----MHSALENVYEAIVGALYLDAGFEATHDFV--RRTLSPHM-VPELAARPLSPKSR 164
Query: 211 LFKLCQKNGK-----QVDIKHWRKNRKNIAS-VYVDGSFVASASSEQKEIAKLNAAREAL 264
L ++ Q+ + +++ + + + V VDG V S K+ ++ AA +AL
Sbjct: 165 LQEVTQREFRCAPEYRLEGEEGPAHSPTFTTVVLVDGRRVGRGSGPSKKESESQAALDAL 224
Query: 265 EKLAQS 270
++L S
Sbjct: 225 DRLGLS 230
>gi|257063721|ref|YP_003143393.1| ribonuclease III [Slackia heliotrinireducens DSM 20476]
gi|256791374|gb|ACV22044.1| ribonuclease III [Slackia heliotrinireducens DSM 20476]
Length = 300
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 113/246 (45%), Gaps = 30/246 (12%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALS 84
+ E E + + II F N +L A+TH S T+ SY+RLEF+GD+ LG ++
Sbjct: 5 TAEQEQKIQRAQEIIGTQFGNTDILLHAITHPSATEGKPVKLSYERLEFLGDSILGAIVA 64
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS 144
N F YP LD G L+ ++ A +S L++VA + GF + S
Sbjct: 65 NEAFHRYPDLDEGGLTRIKVALVSGASLSKVAAELGFEDIIVFG---------------S 109
Query: 145 QEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQ 204
E T G L ++ E++ AA+Y+D + + +++ L P ++ E +
Sbjct: 110 SEQGTGKRG----LHSALENVYEAVVAALYLDQGMEGARSFVM--KTLVPRMSRELATEP 163
Query: 205 PQPVTLLFKLCQKNG-----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNA 259
P + L + Q+ G K V+ + +R ++ V+ +AS K+ ++ A
Sbjct: 164 ENPKSALQEKLQEEGITPTYKLVETQGPPHDRTFVSQVFAGMKALASGMGRTKKESESQA 223
Query: 260 AREALE 265
A+ ALE
Sbjct: 224 AKAALE 229
>gi|297343244|pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
gi|297343245|pdb|3N3W|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
Length = 248
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 74/260 (28%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G
Sbjct: 31 LEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 90
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ S V++E+N G +
Sbjct: 91 LSKLRAALVNEKSFAKIANSLNLGDFILMS--------------VAEENN-----GGKEK 131
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ F+ K T+ +L +KN
Sbjct: 132 PSILSDALEAIIGAIHLEAGFEFAK-------------------------TIALRLIEKN 166
Query: 219 GKQVD----IKHWRKNRKNIA--------------------------SVYVDGSFVASAS 248
Q+D IK ++ + I ++ +DG +A A
Sbjct: 167 FPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAI 226
Query: 249 SEQKEIAKLNAAREALEKLA 268
+ K+ A+ AA+ ALEKL
Sbjct: 227 AGSKKEAQQMAAKIALEKLG 246
>gi|195996181|ref|XP_002107959.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens]
gi|190588735|gb|EDV28757.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens]
Length = 685
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 20/176 (11%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLALSNYVFLAYP 92
+E ++ Y+FK+++LL ALTH++Y + YQRLEF+GDA L + + + A
Sbjct: 433 LEAVLGYSFKDRKLLISALTHATYNHNRIAEGVECYQRLEFLGDAILQYIVVRHCYHANN 492
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV--------- 143
P L A++ E LA + + +G +K+ +++ +L ++ + + V
Sbjct: 493 NYKPADLHDFVEASLQNESLAVMTMVYGIHKYFFYNSPSLFSQINQLLQIVDTNEECEQR 552
Query: 144 -SQEDNTAVYGGSIK----APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194
S E+ VY S+K PK L D+ ES+ AI++D ++ + + LL+P
Sbjct: 553 LSTEEKALVYSNSLKDGVMIPKPLGDLFESLIGAIFIDCGRSIEVVNDLVLRLLQP 608
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
+ALT + D + + LEF+GD+ L A+S FL+Y + GQLS L++ +S E L +
Sbjct: 248 KALTLARANDDFNLETLEFLGDSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNENLYQ 307
Query: 115 VAVKHGFYKFV 125
+ +K G ++
Sbjct: 308 IGIKMGLPGYI 318
>gi|289435148|ref|YP_003465020.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|422419421|ref|ZP_16496376.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|422422509|ref|ZP_16499462.1| ribonuclease III [Listeria seeligeri FSL S4-171]
gi|289171392|emb|CBH27936.1| ribonuclease III [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313632767|gb|EFR99733.1| ribonuclease III [Listeria seeligeri FSL N1-067]
gi|313637349|gb|EFS02832.1| ribonuclease III [Listeria seeligeri FSL S4-171]
Length = 230
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 47/246 (19%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+ ++F++ LL++A THSSY + +RLEF+GDA L L +SNY+F YP +
Sbjct: 11 VGFDFQDIELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPDMAE 70
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G ++ +RAA + L A F K+VR K +E A GG
Sbjct: 71 GHMTKMRAAIVCEPSLVEFAEVVHFSKYVRLG------KGEEKA------------GGRT 112
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQ 203
+ P +LAD+ ES A+Y +D L+K+ ++ P + L+E+ Q
Sbjct: 113 R-PALLADVFESFIGALY--LDNGLEKVVKFLERVIFPKIDAGAYLETVDYKTQLQEIVQ 169
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
+ + V + + + + G N+ A V V+G + S K+ A+ +AA+ A
Sbjct: 170 RDRDVLIEYDILGETGPA-------HNKAFDAQVIVNGQVLGKGSGRTKKQAEQSAAQFA 222
Query: 264 LEKLAQ 269
+ +L
Sbjct: 223 INQLTH 228
>gi|393758412|ref|ZP_10347233.1| ribonuclease III [Alcaligenes faecalis subsp. faecalis NCIB 8687]
gi|393164831|gb|EJC64883.1| ribonuclease III [Alcaligenes faecalis subsp. faecalis NCIB 8687]
Length = 252
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 25/187 (13%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E I Y+FK+ LLE+ALTH S++ + +RLEF+GD+ L ++ +F + ++D G
Sbjct: 7 LEAAIGYSFKDIGLLEQALTHRSHS-ARHNERLEFLGDSVLNFTVAALLFERFQRIDEGD 65
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA + LA +A + G ++R L G +
Sbjct: 66 LSRLRANLVKQAALAEIATRLGLSDYLRLGEGELKS-------------------GGFRR 106
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP-IVTLEELQQQPQPVTLLFKLCQK 217
P +LAD +E+I A+++D F + + L EP +V ++ P TLL +L Q
Sbjct: 107 PSILADALEAIFGAVFLDAGF--TQAQTVITQLYEPMLVDVDPKTLGKDPKTLLQELLQ- 163
Query: 218 NGKQVDI 224
G+++D+
Sbjct: 164 -GRKLDL 169
>gi|340378479|ref|XP_003387755.1| PREDICTED: ribonuclease 3-like [Amphimedon queenslandica]
Length = 349
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 109/247 (44%), Gaps = 36/247 (14%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY--TD--STSYQRLEFIGDAALGLALSNYVFLAYPQL 94
+E I F N RLL A TH SY TD YQR+EF+GDA L S+YV+ +P
Sbjct: 123 LEESIGVRFTNIRLLARAFTHPSYGCTDLLIGDYQRMEFLGDAILQFLTSDYVYDTFPLH 182
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
G LS R A + ++LA V+V+ G F +H D V F
Sbjct: 183 HEGHLSTFRTAIVHNKQLAEVSVELG---FPQHLLLGKDQTVTNF--------------- 224
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-----LEELQQQPQPVT 209
KV AD++ES A+Y+D ++ + M + L P + L+ L + +
Sbjct: 225 -----KVHADLIESFITALYLDK--GMEHVLMFCKVCLFPKLASSAKGLKFLDSKTRLQH 277
Query: 210 LLFKLCQKNGKQVDIKHWRKNR-KNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268
+ C+K ++ + K + VY G +A+ + + A +NAA + L+
Sbjct: 278 AVVYTCKKEKTPIEFPIYSKAMLLPLVGVYFRGRRIATGTGGSSQNAGMNAAEKGLDSRY 337
Query: 269 QSMPVNC 275
+P NC
Sbjct: 338 IIVP-NC 343
>gi|157415855|ref|YP_001483111.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
gi|283957021|ref|ZP_06374493.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
gi|384442208|ref|YP_005658511.1| ribonuclease 3 [Campylobacter jejuni subsp. jejuni M1]
gi|415746574|ref|ZP_11475582.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 327]
gi|419641678|ref|ZP_14173557.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23357]
gi|419643328|ref|ZP_14175076.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ATCC 33560]
gi|419697815|ref|ZP_14225542.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23211]
gi|189043300|sp|A8FNU7.1|RNC_CAMJ8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157386819|gb|ABV53134.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
gi|283791522|gb|EFC30319.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
gi|307748491|gb|ADN91761.1| Ribonuclease 3 [Campylobacter jejuni subsp. jejuni M1]
gi|315931680|gb|EFV10641.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 327]
gi|380616054|gb|EIB35273.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23357]
gi|380622316|gb|EIB41076.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ATCC 33560]
gi|380676845|gb|EIB91721.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23211]
Length = 224
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 74/260 (28%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G
Sbjct: 7 LEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ S V++E+N G +
Sbjct: 67 LSKLRAALVNEKSFAKIANSLNLGDFIFMS--------------VAEENN-----GGKEK 107
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ F+ K T+ +L +KN
Sbjct: 108 PSILSDALEAIIGAIHLEAGFEFAK-------------------------TIALRLIEKN 142
Query: 219 GKQVD----IKHWRKNRKNIA--------------------------SVYVDGSFVASAS 248
Q+D IK ++ + I ++ +DG +A A
Sbjct: 143 FPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAI 202
Query: 249 SEQKEIAKLNAAREALEKLA 268
+ K+ A+ AA+ ALEKL
Sbjct: 203 AGSKKEAQQMAAKIALEKLG 222
>gi|311068114|ref|YP_003973037.1| ribonuclease III [Bacillus atrophaeus 1942]
gi|419823905|ref|ZP_14347438.1| ribonuclease III [Bacillus atrophaeus C89]
gi|310868631|gb|ADP32106.1| ribonuclease III [Bacillus atrophaeus 1942]
gi|388471942|gb|EIM08732.1| ribonuclease III [Bacillus atrophaeus C89]
Length = 249
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 113/242 (46%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I+ +F+N++LL +A THSSY + +RLEF+GDA L L +S ++F YP +
Sbjct: 27 ISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSE 86
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAA + L +A + F V L K +E G
Sbjct: 87 GDLTKLRAAIVCEPSLVSLAHELSFGDLV------LLGKGEEMT-------------GGR 127
Query: 157 KAPKVLADIVESIAAAIYVDIDFD----LQKLWMI-------FRGLLEPIVTLEELQQQP 205
K P +LAD+ E+ A+Y+D + K+++ F +++ L+E Q+
Sbjct: 128 KRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRD 187
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
TL +K+ + G NR+ A V + G + + K+ A+ +AA+EAL
Sbjct: 188 GKGTLEYKIQNEKGPA-------HNREFEAIVSLKGEALGIGNGRSKKEAEQHAAQEALA 240
Query: 266 KL 267
KL
Sbjct: 241 KL 242
>gi|433446059|ref|ZP_20410190.1| ribonuclease III [Anoxybacillus flavithermus TNO-09.006]
gi|432000804|gb|ELK21696.1| ribonuclease III [Anoxybacillus flavithermus TNO-09.006]
Length = 231
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 43/244 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I F+N++LL +A THSSY + +RLEF+GDA L L +S Y+F +PQ+
Sbjct: 10 IGIFFRNEKLLMQAFTHSSYVNEHRKRLHEDNERLEFLGDAVLELTVSQYLFEQFPQMSE 69
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRAA + L A H+ + F + V + GG +
Sbjct: 70 GELTKLRAAIVCEPSLVTFA----------HALS--------FGDLVLLGKGEELTGGRM 111
Query: 157 KAPKVLADIVESIAAAIYVDIDFD-----LQKLWM------IFRGLLEPIVTLEELQQQP 205
+ P +LAD+ E+ A+Y+D + L+K F +++ L+E Q+
Sbjct: 112 R-PSLLADVFEAFIGALYLDQGMEAVVQFLEKTIFPKIREGAFSHVMDYKSQLQEFVQRD 170
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
L +K+ Q+ G N++ ++ V ++G + K+ A+ AA+ AL
Sbjct: 171 GSGVLEYKILQERGPA-------HNKEFVSRVSLNGEELGVGVGRSKKEAEQRAAQMALA 223
Query: 266 KLAQ 269
KL Q
Sbjct: 224 KLKQ 227
>gi|449549195|gb|EMD40161.1| hypothetical protein CERSUDRAFT_112373 [Ceriporiopsis subvermispora
B]
Length = 1511
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 142/302 (47%), Gaps = 54/302 (17%)
Query: 19 LKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIG 75
+ E + + P E ++ VE I+NY FK K LL EALTH+SY + SY+RLEF+G
Sbjct: 1190 ISEILARTEPLEEPPTQLYLVERILNYTFKRKELLVEALTHASYHGEHAAMSYERLEFLG 1249
Query: 76 DAALGLALSNYVFLA-YPQLDPGQLSLLRAANISTEKLARVAVK---------------- 118
D AL + +++Y++ A + PG + L + + +++ LA + ++
Sbjct: 1250 DCALDMVVTDYLYHAPGKEYTPGHMHLRKESLVNSHFLAFICLRAFTTTEATSAHWTPKK 1309
Query: 119 -----------HGFYKFVRHSAAALDDKVKEFA--EAVSQEDNTAVYGG---------SI 156
H + S L+D+ F+ E ++ + G S+
Sbjct: 1310 GTSTTTEHQQIHLHQCLMHSSRRVLEDQHIAFSRFEKSGRKIEEMLLRGTMYPWAALTSL 1369
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFR--GLLEPI--VTLEELQQQPQPVTLLF 212
+APK L+D++ES+ A+Y+D + L+ + + R G++E + + + ++ Q PV+ L
Sbjct: 1370 QAPKFLSDMLESLLGAVYLDTEGSLEAVREVMRVLGIIEVMEHIVMADVDVQ-HPVSRLA 1428
Query: 213 KLCQKNGKQVDIKH-WRKNRKNIA-SVYVDGSFVASA-----SSEQKEIAKLNAAREALE 265
+ Q IK+ K N++ +V +DG + S +E + AA +A+
Sbjct: 1429 IWAAQQVPQHKIKYEIEKKDGNVSCAVVMDGEEIIRITEKYHSRASQEEVRFAAAEQAMH 1488
Query: 266 KL 267
KL
Sbjct: 1489 KL 1490
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 36/151 (23%)
Query: 64 DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYK 123
+ T+YQRLE +GD L S +F YP G L+ + +S +LAR A+ Y+
Sbjct: 1022 EQTNYQRLETLGDTVLKFLASLQLFAQYPLWHEGYLARRKDHAVSNARLAREALGKCLYR 1081
Query: 124 FV--------------------------RHSAAALDDKVKEFAEAVSQEDNT-------A 150
++ HS ++ D + AE QE +T
Sbjct: 1082 WIIRERFVPRKWKPLYRVQEPSTIITNAEHSISSEQDSIPVEAE---QEVDTELQKKLKK 1138
Query: 151 VYGGSIKAPKVLADIVESIAAAIYVDIDFDL 181
+ KVLAD+VE++ A Y FDL
Sbjct: 1139 KKQSQQLSTKVLADVVEALIGASYEHGGFDL 1169
>gi|345019922|ref|ZP_08783535.1| ribonuclease III [Ornithinibacillus scapharcae TW25]
Length = 227
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 120/250 (48%), Gaps = 51/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYP 92
+E ++N F+N ++++A THSSY + ++ +RLEF+GDA L L +S Y++ YP
Sbjct: 6 LEELLNIQFRNIDVVKQAFTHSSYVNEHRDLHTSDNERLEFLGDAVLELGVSQYLYRKYP 65
Query: 93 QLDPGQLSLLRAANI---STEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNT 149
++ G+++ LRAA + S E AR +LD F E +
Sbjct: 66 EMPEGEMTKLRAAIVCEPSLEAFAR----------------SLD-----FGEHILLGKGE 104
Query: 150 AVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT------------ 197
+ GG + P +LAD+ E+ A+Y+D F+ L + + + I T
Sbjct: 105 EMTGGRNR-PALLADVFEAFLGAVYLDQGFE-TALEFLEKHVFPKIDTGAFSHGMDYKSK 162
Query: 198 LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKL 257
L+E QQ + T+ +++ + G N++ ++ + ++ + + K+ A+
Sbjct: 163 LQEKVQQDRNKTIEYRIIDERGPS-------HNKEFVSELLINDNVFGTGIGRTKKEAEQ 215
Query: 258 NAAREALEKL 267
AA+ AL+KL
Sbjct: 216 RAAKNALDKL 225
>gi|317129239|ref|YP_004095521.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522]
gi|315474187|gb|ADU30790.1| ribonuclease III [Bacillus cellulosilyticus DSM 2522]
Length = 253
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 43/232 (18%)
Query: 55 EALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
+A THSSY + +RLEF+GDA L LA+S Y+F Y + G+++ LRAA +
Sbjct: 48 QAFTHSSYVNEHRIRPHDDNERLEFLGDAVLELAISQYLFKNYANMSEGEMTKLRAAIVC 107
Query: 109 TEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVES 168
LA++A D++K F E V + GG K P +LAD+ ES
Sbjct: 108 EPSLAKIA-----------------DELK-FGERVLLGKGEEMTGGR-KRPALLADVFES 148
Query: 169 IAAAIYVDID----FDLQKLWMI-------FRGLLEPIVTLEELQQQPQPVTLLFKLCQK 217
A+Y+D+ +D K+ + F +++ L+EL Q+ + +K+ Q+
Sbjct: 149 FVGALYLDLGMDAVYDFLKVNVYPKIADGAFSDMMDYKSQLQELVQREGQGQIQYKIVQE 208
Query: 218 NGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
G R+ ++ V+++ + + K+ A+ AA++ALEK +
Sbjct: 209 RGPA-------HAREFVSEVWLENKLLGIGAGRSKKEAEQMAAQKALEKFTK 253
>gi|373468280|ref|ZP_09559538.1| ribonuclease III [Lachnospiraceae bacterium oral taxon 082 str.
F0431]
gi|371766514|gb|EHO54767.1| ribonuclease III [Lachnospiraceae bacterium oral taxon 082 str.
F0431]
Length = 253
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/269 (28%), Positives = 122/269 (45%), Gaps = 50/269 (18%)
Query: 16 YRLLKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD------STSYQ 69
YRLL+ M +L ++ ++ Y +KN LL +ALTHSSY + + S +
Sbjct: 19 YRLLRVVMNNNLNE---------LQKLLGYEYKNTELLNQALTHSSYANEHQLGKNGSNE 69
Query: 70 RLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSA 129
RLEF+GDA L L S + + YP G+L+ +RA+ + L A K VR S
Sbjct: 70 RLEFLGDAVLELVSSEFFYGVYPDKPEGELTKIRASFVCEPALVDCA------KNVRLS- 122
Query: 130 AALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQK---LWM 186
EF + E++T GG + P +++D E++ +IY+D F K L
Sbjct: 123 --------EFIKLGKGEEHT---GGRFR-PSIISDTFEAVIGSIYLDGGFANAKEVILKF 170
Query: 187 IFRGLLEPI------VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVD 240
I G + L+E+ Q + + L + G H +K I +V ++
Sbjct: 171 ILNGYENKVFFYDSKTILQEVIQSQDSRPVEYDLLSEEGPD----HL---KKFIVAVKIN 223
Query: 241 GSFVASASSEQKEIAKLNAAREALEKLAQ 269
G V K+ A+ AA EAL+KL +
Sbjct: 224 GEKVGVGEGVSKKSAEQAAAYEALKKLGK 252
>gi|90420862|ref|ZP_01228767.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1]
gi|90334837|gb|EAS48609.1| ribonuclease III [Aurantimonas manganoxydans SI85-9A1]
Length = 252
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 95/203 (46%), Gaps = 37/203 (18%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--------TSYQRLEFIGDAALGLALSNYVFLA 90
+E+ I F K E ALTHSS S SY+RLEF+GD LGL ++ +F
Sbjct: 25 LESRIGITFHEKARFERALTHSSLRSSKGGKGEGERSYERLEFLGDRVLGLVVAEKLFDM 84
Query: 91 YPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTA 150
+P D G+LSL + +S + A +A + G Y+FVRH K+K
Sbjct: 85 FPGADEGELSLRLNSLVSADTCAEIADELGLYEFVRHGGDL--KKLK------------- 129
Query: 151 VYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIV--------TLEE 200
S + + AD+VES+ AAIY+ + + +++ + G L V L+E
Sbjct: 130 ----SDRTKSIRADLVESLIAAIYLGEGLETARDFIVRYWGGRLGKSVAARRDAKTALQE 185
Query: 201 LQQQPQPVTLLFKLCQKNGKQVD 223
PVT +++ +++G D
Sbjct: 186 WAHTRGPVTPQYEIVERSGPDHD 208
>gi|389815314|ref|ZP_10206660.1| ribonuclease 3 [Planococcus antarcticus DSM 14505]
gi|388466093|gb|EIM08402.1| ribonuclease 3 [Planococcus antarcticus DSM 14505]
Length = 251
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 38/165 (23%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+N +F LL +A THSSY + T +RLEF+GDA L L++S+Y+++ YP++
Sbjct: 30 LNVSFNKPALLYQAFTHSSYVNEHRRKQFTDNERLEFLGDAVLELSVSHYLYMKYPEMSE 89
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRAA + L A + GF K++ L K +E GG
Sbjct: 90 GELTKLRAAIVCEPSLVLFANELGFGKYI------LLGKGEELT------------GGRT 131
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEEL 201
+ P +LAD+ ES A+Y+D +G LEP+VT E+
Sbjct: 132 R-PALLADVFESYIGALYLD------------QG-LEPVVTFLEM 162
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTD-GVLFITGDEKSRVKDAE 352
K +L EL +K +Y+I + GP+H + F++ V +A + GV G+ +S+ K+AE
Sbjct: 180 KSQLQELIQQKNTGALNYEIIDEIGPAHSRVFVTRVSLADKELGV----GNGRSK-KEAE 234
Query: 353 NSAASMMLRALRES 366
AA + +R L+E+
Sbjct: 235 QQAAQLAIRKLQEA 248
>gi|121613213|ref|YP_001001278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
gi|121504230|gb|EAQ72743.2| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
Length = 225
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 74/260 (28%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G
Sbjct: 8 LERSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 67
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ S V++E+N G +
Sbjct: 68 LSKLRAALVNEKSFAKIANSLNLGDFIFMS--------------VAEENN-----GGKEK 108
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ F+ K T+ +L +KN
Sbjct: 109 PSILSDALEAIIGAIHLEAGFEFAK-------------------------TIALRLIEKN 143
Query: 219 GKQVD----IKHWRKNRKNIA--------------------------SVYVDGSFVASAS 248
Q+D IK ++ + I ++ +DG +A A
Sbjct: 144 FPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAI 203
Query: 249 SEQKEIAKLNAAREALEKLA 268
+ K+ A+ AA+ ALEKL
Sbjct: 204 AGSKKEAQQMAAKIALEKLG 223
>gi|86152963|ref|ZP_01071168.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13]
gi|167006173|ref|ZP_02271931.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
gi|419617831|ref|ZP_14151397.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 129-258]
gi|419654145|ref|ZP_14185094.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-872]
gi|419665962|ref|ZP_14196014.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-7]
gi|419668873|ref|ZP_14198676.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-11]
gi|419687215|ref|ZP_14215623.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1798]
gi|419691430|ref|ZP_14219550.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1928]
gi|85843848|gb|EAQ61058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13]
gi|380596428|gb|EIB17120.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 129-258]
gi|380631711|gb|EIB49874.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-872]
gi|380642199|gb|EIB59482.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-7]
gi|380648273|gb|EIB65135.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-11]
gi|380662839|gb|EIB78523.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1798]
gi|380672387|gb|EIB87559.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1928]
Length = 224
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 74/260 (28%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G
Sbjct: 7 LERSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ S V++E+N G +
Sbjct: 67 LSKLRAALVNEKSFAKIANSLNLGDFIFMS--------------VAEENN-----GGKEK 107
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ F+ K T+ +L +KN
Sbjct: 108 PSILSDALEAIIGAIHLEAGFEFAK-------------------------TIALRLIEKN 142
Query: 219 GKQVD----IKHWRKNRKNIA--------------------------SVYVDGSFVASAS 248
Q+D IK ++ + I ++ +DG +A A
Sbjct: 143 FPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAI 202
Query: 249 SEQKEIAKLNAAREALEKLA 268
+ K+ A+ AA+ ALEKL
Sbjct: 203 AGSKKEAQQMAAKIALEKLG 222
>gi|302036171|ref|YP_003796493.1| ribonuclease III [Candidatus Nitrospira defluvii]
gi|300604235|emb|CBK40567.1| Ribonuclease III [Candidatus Nitrospira defluvii]
Length = 234
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 35/245 (14%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT------DSTSYQRLEFIGDAALGLALSNYVFLAYP 92
V+ ++ Y F RLLEEALTH SY+ D T +RLEF+GDA L L +S Y+ +P
Sbjct: 10 VQRLLGYRFHQPRLLEEALTHKSYSNERRSRDRTQNERLEFLGDAVLSLVMSEYLAAEFP 69
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ G LS L+A +S LA+ A + + +R K +E ++ +
Sbjct: 70 GSNEGGLSKLKAHLVSEASLAKAARRMKLGRLLRLG------KGEELSKGREKHS----- 118
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP---VT 209
+LAD +E++ AAIY+D + + + + + L E ++ Q +P T
Sbjct: 119 --------LLADALEALIAAIYLDGGLEASRKFTL-QVLEEELLATRAEQARPGMEDYKT 169
Query: 210 LLFKLCQKNGKQV-DIKHWRKNRKNIASVY-----VDGSFVASASSEQKEIAKLNAAREA 263
L ++CQK + + + R++ + V+ + G K+ A+ AA+EA
Sbjct: 170 QLQEVCQKRYESLPQYETVRESGPDHEKVFEVELTIQGVMRGIGRGRSKKEAEQMAAKEA 229
Query: 264 LEKLA 268
L +LA
Sbjct: 230 LTQLA 234
>gi|34558193|ref|NP_908008.1| ribonuclease III [Wolinella succinogenes DSM 1740]
gi|81653364|sp|Q7M840.1|RNC_WOLSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|34483912|emb|CAE10908.1| RIBONUCLEASE III [Wolinella succinogenes]
Length = 238
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 28/233 (12%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQL 99
E + Y F+NK LL EALTH SY + +RLEF+GDA L L + ++FL +P+ D G+L
Sbjct: 8 EKRLGYRFQNKNLLIEALTHKSYKKPYNNERLEFLGDAVLDLVIGEFLFLKFPKADEGEL 67
Query: 100 SLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI--- 156
S +RA+ ++ + A++A + + + S A ++K +E +S + G+I
Sbjct: 68 SKMRASLVNEKGFAKLAERVSLGRHIFISNAEENNKGREKPSLLSNAFEATM--GAIYLE 125
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
V+ ++V + +Y ID L +FR + L+EL Q T + +
Sbjct: 126 TGLSVVREVVHRLLDEVYPKID-----LGSLFR---DYKTALQELTQAKFGETPEYVILG 177
Query: 217 KNG----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+G K+ ++ +V V GS A A K+ A+ AAR ALE
Sbjct: 178 SSGPDHKKEFEV-----------AVCVLGSEYARACGSSKKEAQQEAARIALE 219
>gi|321457596|gb|EFX68679.1| hypothetical protein DAPPUDRAFT_259733 [Daphnia pulex]
Length = 402
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 29/168 (17%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQL 99
ENI++Y +K +L EA TH + S +YQRLE IGDAAL G +
Sbjct: 88 ENILHYTSNDKEVLLEAFTHGNSMKSQNYQRLELIGDAAL-----------------GDI 130
Query: 100 SLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED------------ 147
+ LR+A + + A K+GF++ V++ L + +F E V +E+
Sbjct: 131 TKLRSACVCNDIFGVWAAKYGFHEHVQNLPPILLKQFNDFLEVVERENITFAPFERELAA 190
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195
N + + P LAD+ E++ AI +D + + L ++ + P+
Sbjct: 191 NGQIMATQVAIPSFLADVFEAVEGAIIIDANLSFETLERVYARFMTPV 238
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 31/45 (68%)
Query: 35 AVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAAL 79
AV E I+NY+F K +L EALT+ + S +YQRLE IGDAAL
Sbjct: 314 AVKAFEEILNYSFNYKEVLLEALTYGNSIRSLNYQRLEVIGDAAL 358
>gi|195997771|ref|XP_002108754.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens]
gi|190589530|gb|EDV29552.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens]
Length = 1018
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 91/178 (51%), Gaps = 18/178 (10%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQL 94
+E +I Y+F+NK + ALTHSSY S Q+LEF+GD L ++ + F ++P
Sbjct: 817 LEKVIGYSFQNKLFMIRALTHSSYHHHDIAIESNQKLEFLGDTILQYIIARHFFNSHPDA 876
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE-------- 146
P +L + A ++ + LA + + G K+V + L + +FA+ ++ +
Sbjct: 877 KPAKLHDFQEAIVNNKCLAVIGIAIGVSKYVFQESPDLFRDIDQFAKIITCDYMIDDEMN 936
Query: 147 --DNTAV----YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTL 198
D T + +K PK ++D+VE++ AIY+D + ++ LL+P ++L
Sbjct: 937 YNDRTEALFENFTEEVKIPKPVSDVVEALIGAIYIDTGESIAEVTKALMPLLQPRISL 994
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 19/175 (10%)
Query: 23 MLTSLPSPEMEDAVFYVENIINYNF-KNKRL---LEEALTHSSYTDSTSYQRLEFIGDAA 78
M T L + E++D +F I + KN+ L EALT + D S +RLEF+GD+
Sbjct: 593 METLLLAHELKDVLFGSIPINGISISKNQTFTLKLLEALTLAEAEDDISLERLEFLGDSF 652
Query: 79 LGLALSNYVFLAYPQLDPGQLS-----LLRAANI----STEKLARVAVKHGFY-----KF 124
L ++ +F+++P+ GQL+ ++R N+ + + + F +
Sbjct: 653 LKFIIAANLFISHPKYHEGQLTNELTKIVRNDNLLKLGKSTPICEYIIGKPFNLLKNEGW 712
Query: 125 VRHSAAALDDKVKEFAEAVSQE-DNTAVYGGSIKAPKVLADIVESIAAAIYVDID 178
+ L KVK E V+ + D + K +AD++++I AAI ++ D
Sbjct: 713 IPPGYKLLSSKVKNLDEKVTSDLDGDKAVTHQKFSSKSIADVMKAILAAILLEFD 767
>gi|419622547|ref|ZP_14155777.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23216]
gi|380599261|gb|EIB19635.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23216]
Length = 224
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 74/260 (28%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G
Sbjct: 7 LEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ S V++E+N G +
Sbjct: 67 LSKLRAALVNEKSFAKIANSLNLGDFIFMS--------------VAEENN-----GGKEK 107
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ F+ K T+ +L +KN
Sbjct: 108 PSILSDALEAIIGAIHLEAGFEFAK-------------------------TIALRLIEKN 142
Query: 219 GKQVD----IKHWRKNRKNIA--------------------------SVYVDGSFVASAS 248
Q+D IK ++ + I ++ +DG +A A
Sbjct: 143 FPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALILDGKELARAI 202
Query: 249 SEQKEIAKLNAAREALEKLA 268
+ K+ A+ AA+ ALEKL
Sbjct: 203 AGSKKEAQQMAAKIALEKLG 222
>gi|227510452|ref|ZP_03940501.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227190104|gb|EEI70171.1| ribonuclease III [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 236
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 43/244 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
N + ++ LL+EA T +SY + Y+RLEF+GDA L L +S Y+F YP+L
Sbjct: 13 FNIHIDDQDLLDEAFTQASYVNEHRDQHLKFYERLEFLGDAVLQLIVSEYIFKRYPKLPQ 72
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRAA ++ + + A + F K++R K +E A G+
Sbjct: 73 GRLTRLRAAMVNEQSFSTFARECHFNKYIRLG------KGEEKA-------------GAR 113
Query: 157 KAPKVLADIVESIAAAIYVD-----IDFDLQKLWM------IFRGLLEPIVTLEELQQQP 205
+L DI ES A+Y+D ++ +Q++ +F + L+EL Q
Sbjct: 114 DRDSLLCDIFESFVGALYLDQGKTVVEGFVQQVIFPKLDEGMFAKFFDHKTELQELAQAD 173
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
PV + ++L + G D R + N+A +D + K+ A+ AA+EAL+
Sbjct: 174 GPVDIDYELVDEYGPDND----RLFKVNVA---IDDKLLGVGIGHSKKDAEQRAAQEALK 226
Query: 266 KLAQ 269
++
Sbjct: 227 HFSK 230
>gi|293609826|ref|ZP_06692128.1| ribonuclease 3 [Acinetobacter sp. SH024]
gi|384955648|sp|F0KKL2.2|RNC_ACICP RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|292828278|gb|EFF86641.1| ribonuclease 3 [Acinetobacter sp. SH024]
Length = 230
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 68/134 (50%), Gaps = 19/134 (14%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
I Y FK LL+ ALTH S + +Y+RLEF+GD+ LG+ ++NY++ AYP + G+L+ +
Sbjct: 17 IGYQFKQLELLQLALTHRSVSHKYNYERLEFLGDSLLGMIIANYLYHAYPNENEGRLTRM 76
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
RA + E L ++A + + S L G +L
Sbjct: 77 RATLVRQEALGKIATDLQLSRCLILSTGELKS-------------------GGHHRESIL 117
Query: 163 ADIVESIAAAIYVD 176
AD VE+I AIY+D
Sbjct: 118 ADTVEAIIGAIYLD 131
>gi|227513461|ref|ZP_03943510.1| ribonuclease III [Lactobacillus buchneri ATCC 11577]
gi|227524604|ref|ZP_03954653.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290]
gi|227083334|gb|EEI18646.1| ribonuclease III [Lactobacillus buchneri ATCC 11577]
gi|227088279|gb|EEI23591.1| ribonuclease III [Lactobacillus hilgardii ATCC 8290]
Length = 236
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 43/244 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
N + ++ LL+EA T +SY + Y+RLEF+GDA L L +S Y+F YP+L
Sbjct: 13 FNIHIDDQDLLDEAFTQASYVNEHRDQHLKFYERLEFLGDAVLQLIVSEYIFKRYPKLPQ 72
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRAA ++ + + A + F K++R + + + A G+
Sbjct: 73 GRLTRLRAAMVNEQSFSTFARECHFNKYIR----------------LGKGEEKA---GAR 113
Query: 157 KAPKVLADIVESIAAAIYVD-----IDFDLQKLWM------IFRGLLEPIVTLEELQQQP 205
+L DI ES A+Y+D ++ +Q++ +F + L+EL Q
Sbjct: 114 DRDSLLCDIFESFVGALYLDQGKKVVEGFVQQVIFPKLDEGMFAKFFDHKTELQELAQAD 173
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
PV + ++L + G D R + N+A +D + K+ A+ AA+EAL+
Sbjct: 174 GPVDIDYELVDEYGPDND----RLFKVNVA---IDDKLLGVGIGHSKKDAEQRAAQEALK 226
Query: 266 KLAQ 269
++
Sbjct: 227 HFSK 230
>gi|303233301|ref|ZP_07319972.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
gi|302480601|gb|EFL43690.1| ribonuclease III [Atopobium vaginae PB189-T1-4]
Length = 229
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 118/247 (47%), Gaps = 41/247 (16%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNYVFLAY 91
V V+ I++Y F + L + ALTH S + S SY+RLEF+GD+ LG ++ +F +
Sbjct: 7 VCRVQEILDYTFSDITLAKAALTHPSAVEGQPVSASYERLEFLGDSILGAIIACDMFEQF 66
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV 151
P +D G L+ ++ + +S + L++VA + G + F E+ E T
Sbjct: 67 PDMDEGALTRMKTSLVSGQTLSQVADELGIAPLIV------------FGES---ERGTGT 111
Query: 152 YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKL--------WMIFRGLLEPIVTLEELQQ 203
G L ++ E++ A+Y+D +D +M+ + PI ELQ+
Sbjct: 112 RG----MHSALENVYEALVGAMYLDGGYDPTAAFIRRTLAEYMVPQRAAHPISPKSELQE 167
Query: 204 QPQPV---TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
Q + +++L +++G + H+ +VYV+G V S K+ ++ AA
Sbjct: 168 FSQRIYHEMPVYELEEESGP-AHLPHF------TTAVYVNGELVGRGSGTSKKESQTQAA 220
Query: 261 REALEKL 267
+ AL+KL
Sbjct: 221 QAALDKL 227
>gi|417315456|ref|ZP_12102132.1| ribonuclease III [Listeria monocytogenes J1816]
gi|328466160|gb|EGF37317.1| ribonuclease III [Listeria monocytogenes J1816]
Length = 222
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 49/241 (20%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+ ++FK+ LL++A THSSY + +RLEF+GDA L L +SNY+F YP +
Sbjct: 11 VGFDFKDVELLKQAFTHSSYVNEHRRENVKDNERLEFLGDAVLELTVSNYLFNKYPDMAE 70
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G ++ +RAA + L A F K+VR K +E A GG
Sbjct: 71 GHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG------KGEEKA------------GGRT 112
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-------------TLEELQQ 203
+ P +LAD+ ES A+Y+D D K+ ++ P + L+E+ Q
Sbjct: 113 R-PALLADVFESFIGALYLDNGID--KVVTFLERVIFPKIDAGAYLQTVDYKTQLQEIVQ 169
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
+ + V + + + + G N+ A V V+G + S QK K N R
Sbjct: 170 RDRDVLIEYDILGETGPA-------HNKAFDAQVIVNGQVLGKGSGRQKN--KQNKVRHN 220
Query: 264 L 264
L
Sbjct: 221 L 221
>gi|161507714|ref|YP_001577671.1| ribonuclease III [Lactobacillus helveticus DPC 4571]
gi|260101401|ref|ZP_05751638.1| ribonuclease III [Lactobacillus helveticus DSM 20075]
gi|385813586|ref|YP_005849979.1| Double stranded RNA-specific ribonuclease RNase [Lactobacillus
helveticus H10]
gi|403514797|ref|YP_006655617.1| ribonuclease III [Lactobacillus helveticus R0052]
gi|160348703|gb|ABX27377.1| Double stranded RNA-specific ribonuclease RNase [Lactobacillus
helveticus DPC 4571]
gi|260084741|gb|EEW68861.1| ribonuclease III [Lactobacillus helveticus DSM 20075]
gi|323466305|gb|ADX69992.1| Double stranded RNA-specific ribonuclease RNase [Lactobacillus
helveticus H10]
gi|403080235|gb|AFR21813.1| ribonuclease III [Lactobacillus helveticus R0052]
Length = 228
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 27/179 (15%)
Query: 47 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
F N++LLEEA THSSY++ Y++LEF+GDA L LA+S+Y++ YP+L+ G+L+
Sbjct: 18 FNNEKLLEEAFTHSSYSNEHPNDGIRDYEKLEFLGDAVLELAVSDYLYRHYPKLNEGELT 77
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
LR+ + TE + A++ GF + N G+ K
Sbjct: 78 RLRSNIVRTEGFSEFAIECGFQNEIHLG-------------------NGEEKAGARKRKT 118
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNG 219
+L D+ E+ A+++D + + + P++ E T L +L Q+NG
Sbjct: 119 LLEDVFEAFNGALFLDQ--GMPAVQHFLHLTVYPLIDKGEFDDSRDYKTDLQELLQQNG 175
>gi|20807916|ref|NP_623087.1| ribonuclease III [Thermoanaerobacter tengcongensis MB4]
gi|22654052|sp|Q8R9W3.1|RNC_THETN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|20516484|gb|AAM24691.1| dsRNA-specific ribonuclease [Thermoanaerobacter tengcongensis MB4]
Length = 228
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 114/248 (45%), Gaps = 43/248 (17%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSY-----TDSTSYQRLEFIGDAALGLALSNYVFLAYP 92
Y+E INY FK+K LL EALTHSS+ + S +RLEF+GD+ L L +S Y++
Sbjct: 4 YLEQKINYEFKDKTLLLEALTHSSWAHEGKNEKVSNERLEFLGDSVLSLVISEYLYKNRK 63
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
L+ G LS RA + LAR A K F+R E +S
Sbjct: 64 DLEEGSLSKYRAEIVCEPSLARCARKIELGSFLRMGK----------GEEIS-------- 105
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQK--LWMIFRGLLEPIVT----------LEE 200
G +LAD +E++ AA+Y+D + + + +F+ +++ ++ L+E
Sbjct: 106 -GGRDRDSILADAMEALLAAVYLDGGLEAVRRVILDLFKEIIDEVLKGIIYRDYKTRLQE 164
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
+ Q + + ++L ++ G N+ + V + + + K+ ++ AA
Sbjct: 165 VVQSMEVGKITYELVEEIGPD-------HNKTFVTQVKIGDVVLGIGQGKSKKESEQAAA 217
Query: 261 REALEKLA 268
EAL KL
Sbjct: 218 MEALSKLG 225
>gi|255320780|ref|ZP_05361955.1| ribonuclease III [Acinetobacter radioresistens SK82]
gi|262379444|ref|ZP_06072600.1| ribonuclease III [Acinetobacter radioresistens SH164]
gi|421465513|ref|ZP_15914200.1| ribonuclease III [Acinetobacter radioresistens WC-A-157]
gi|421854666|ref|ZP_16287051.1| ribonuclease III [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
gi|255302157|gb|EET81399.1| ribonuclease III [Acinetobacter radioresistens SK82]
gi|262298901|gb|EEY86814.1| ribonuclease III [Acinetobacter radioresistens SH164]
gi|400203780|gb|EJO34765.1| ribonuclease III [Acinetobacter radioresistens WC-A-157]
gi|403189681|dbj|GAB73252.1| ribonuclease III [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
Length = 230
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 109/242 (45%), Gaps = 31/242 (12%)
Query: 37 FYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
F + + I Y FK LL+ ALTH S + +Y+RLEF+GD+ LG+ ++NY++ AYP +
Sbjct: 11 FRLPSRIGYQFKQPELLQLALTHRSVSHKYNYERLEFLGDSLLGMIIANYLYHAYPFENE 70
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ +RA + E L ++A + + S L G
Sbjct: 71 GRLTRMRATLVRQEALGKIANDLKLSQCLILSTGELKS-------------------GGH 111
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-TLEELQQQPQPVTLLFKLC 215
+LAD VE+I AIY+D +L+ L I P + +E Q P + L +
Sbjct: 112 HRESILADTVEAIIGAIYIDCG-ELKILQDIVLKWYGPYLNNIEPTDQLKDPKSRLQEYL 170
Query: 216 QKNGKQ------VDIKHWRKNRKNIASVYVDG--SFVASASSEQKEIAKLNAAREALEKL 267
Q K VDI+ N+ VD F+ SS + A+ AA E L+ L
Sbjct: 171 QARKKPLPVYEVVDIQGDAPNQHFKVECSVDSLPKFIGEGSS--RRFAEQAAAAEILKLL 228
Query: 268 AQ 269
Q
Sbjct: 229 EQ 230
>gi|384156209|ref|YP_005539024.1| ribonuclease III [Arcobacter butzleri ED-1]
gi|345469763|dbj|BAK71214.1| ribonuclease III [Arcobacter butzleri ED-1]
Length = 224
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 23/140 (16%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E ++Y FKNK L+ EALTH S+ + +RLEF+GDA L L + Y++L +P+ + G+
Sbjct: 7 LEKCLDYQFKNKNLIIEALTHKSFKKPYNNERLEFLGDAVLNLIVGEYLYLKFPKSNEGE 66
Query: 99 LSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
LS +RA+ ++ R+A +K G Y F+ + ++E N G
Sbjct: 67 LSKIRASLVNETGFTRLANEIKLGEYIFI----------------STAEERNK----GRT 106
Query: 157 KAPKVLADIVESIAAAIYVD 176
KA +L+D E+I AIY++
Sbjct: 107 KAS-ILSDAFEAIMGAIYLE 125
>gi|403667654|ref|ZP_10932954.1| ribonuclease 3 [Kurthia sp. JC8E]
Length = 248
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 114/248 (45%), Gaps = 45/248 (18%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYP 92
++N + +F NK +L A THSSY + +RLEF+GDA L L +S ++FL +P
Sbjct: 24 LQNNLGLHFTNKNVLYNAFTHSSYVNEHRRKQYEDNERLEFLGDAVLELTVSKFLFLKFP 83
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
++ GQL+ LRAA + L A + F +FV E+NT
Sbjct: 84 KMTEGQLTKLRAAIVCEPALVIFANELKFGEFVLLGKG---------------EENT--- 125
Query: 153 GGSIKAPKVLADIVESIAAAIYVD------------IDFDLQKLWMIFRGLLEPIVTLEE 200
G + P +LAD E+ A+Y+D + F +L M F +++ L+E
Sbjct: 126 -GGRERPALLADCFEAFVGALYLDQGLETVVGFLGKVVFPKVELGM-FSDVMDFKSQLQE 183
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L QQ +L + + ++NG R ++ V ++ ++ + K+ A+ AA
Sbjct: 184 LVQQTSSGSLQYAIVKENGPA-------HKRTFVSQVILNDVVISEGHGKSKKEAEQKAA 236
Query: 261 REALEKLA 268
+ A+ L
Sbjct: 237 QIAIHTLT 244
>gi|238926905|ref|ZP_04658665.1| ribonuclease III [Selenomonas flueggei ATCC 43531]
gi|238885139|gb|EEQ48777.1| ribonuclease III [Selenomonas flueggei ATCC 43531]
Length = 238
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 24/144 (16%)
Query: 42 IINYNFKNKRLLEEALTHSSYTD-----STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
++ +F + LLEEALTH SY + +T +RLEF+GDA L LA+S Y+++AYP
Sbjct: 19 FLDVDFADLSLLEEALTHPSYVNEARERATHNERLEFLGDAVLELAISTYLYVAYPHCSE 78
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ +RA+ + +E LAR+A + H A L E + GG
Sbjct: 79 GELTKMRASLVQSETLARLARR-------LHLGAHLRMGRGE------------MLGGGA 119
Query: 157 KAPKVLADIVESIAAAIYVDIDFD 180
+ L ++ E++ A+Y+D +D
Sbjct: 120 ERQNNLENVFEAVIGAVYLDRGWD 143
>gi|345875651|ref|ZP_08827442.1| ribonuclease III [Neisseria weaveri LMG 5135]
gi|417958288|ref|ZP_12601203.1| ribonuclease III [Neisseria weaveri ATCC 51223]
gi|343966946|gb|EGV35197.1| ribonuclease III [Neisseria weaveri ATCC 51223]
gi|343968726|gb|EGV36950.1| ribonuclease III [Neisseria weaveri LMG 5135]
Length = 239
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 20/147 (13%)
Query: 33 EDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYP 92
++A+ +++ + Y+F+N LL +ALTH SY+ + + +RLEFIGDA L ++ +F A+P
Sbjct: 8 QNALAHIQKKLGYSFRNTELLVQALTHRSYS-AKNNERLEFIGDAVLDYTVAKMLFDAFP 66
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+L G+LS LR+ ++ LA +A++ + + L
Sbjct: 67 KLSEGELSRLRSNLVNEAVLADIAIEMNIGEALFLGTGELKS------------------ 108
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDF 179
G + P +LAD VE++ AA+ +D DF
Sbjct: 109 -GGFRRPSILADAVEALFAAVSLDADF 134
>gi|91205996|ref|YP_538351.1| ribonuclease III [Rickettsia bellii RML369-C]
gi|157826640|ref|YP_001495704.1| ribonuclease III [Rickettsia bellii OSU 85-389]
gi|122425284|sp|Q1RHA2.1|RNC_RICBR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|189043340|sp|A8GYE2.1|RNC_RICB8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|91069540|gb|ABE05262.1| Ribonuclease III [Rickettsia bellii RML369-C]
gi|157801944|gb|ABV78667.1| ribonuclease III [Rickettsia bellii OSU 85-389]
Length = 227
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 110/245 (44%), Gaps = 43/245 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSS------YTDSTSYQRLEFIGDAALGLALSNYVFLAYP 92
+E +++Y+FKNK LL EAL+H S Y + Y+RLEF+GDA L L ++ +F +
Sbjct: 7 LEKLLDYSFKNKALLTEALSHPSLRQHHEYKANKDYERLEFLGDAVLNLIITEILFNNFK 66
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ + G L+ +R+ + E + V K G ++ + E ++
Sbjct: 67 EYNEGNLAKIRSYLVCKETICVVGAKLGLKNYI----------IMTHGEEIA-------- 108
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWMIFRGL-----LEPIVTLEELQ 202
G P + ++ E++ AAIY+D D + KLW F + +P L+E
Sbjct: 109 -GGRDNPNNIENVTEALIAAIYLDSDITTIHNIIGKLWAEFIKVKDLTDYDPKTALQEWA 167
Query: 203 QQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262
Q +++L ++ G + H SV ++G KE K NAARE
Sbjct: 168 QSKDHHIPIYRLIKREG----VAHL---STFTVSVKINGYEQTGKGHSIKEAEK-NAARE 219
Query: 263 ALEKL 267
L KL
Sbjct: 220 LLHKL 224
>gi|332653520|ref|ZP_08419265.1| ribonuclease III [Ruminococcaceae bacterium D16]
gi|332518666|gb|EGJ48269.1| ribonuclease III [Ruminococcaceae bacterium D16]
Length = 226
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 93/198 (46%), Gaps = 38/198 (19%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST-----SYQRLEFIGDAALGLALSNYVFLAYPQ 93
+E + Y F+N+ LLE ALTHSS + + S +RLEF+GD+ LG+ ++++++ +P
Sbjct: 4 LEEKLGYQFQNRELLENALTHSSCANESRGKLQSNERLEFLGDSILGMVVADHLYRGHPD 63
Query: 94 LDPGQLSLLRAANISTEKLARV--AVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV 151
L G+L+ +RAA + E L V A+ G Y + A
Sbjct: 64 LPEGELTRVRAALVCEESLVEVAQALDLGSYLLLGKGEEA-------------------- 103
Query: 152 YGGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWMI--FRGLLEPI---VTLEEL 201
GG P + AD VE++ AA+Y+D +QK + G+ P L+EL
Sbjct: 104 -GGGRTRPSIQADAVEAVLAAVYLDGGIGSARKIIQKYILCREIEGITSPRDYKTALQEL 162
Query: 202 QQQPQPVTLLFKLCQKNG 219
Q+ L ++L G
Sbjct: 163 VQRESGQVLKYRLVGSQG 180
>gi|426198231|gb|EKV48157.1| hypothetical protein AGABI2DRAFT_202619 [Agaricus bisporus var.
bisporus H97]
Length = 1179
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 15/179 (8%)
Query: 28 PSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYV 87
P P + + ++E I + F+ LL LT +S + +QRLEF+GDA L + Y+
Sbjct: 991 PEPSV---MHFIETITGFRFQQPSLLRLTLTQNS-MEMKDHQRLEFLGDAVLDFLVVRYL 1046
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR-----------HSAAALDDKV 136
+ PG+LS++++ +S LA + V G ++FV + A +
Sbjct: 1047 YDKDEHASPGELSVMKSLMVSNSILAAICVWSGLHRFVHVRQQQKQVVWDYEKALRGREA 1106
Query: 137 KEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195
E A + + + PKVL+D++ESI A Y+ DF + +IF +L P
Sbjct: 1107 AETASTSKEAARVTYFWMDLDVPKVLSDVIESIIGAAYISDDFSQAGVEVIFDQMLLPF 1165
>gi|157737847|ref|YP_001490531.1| ribonuclease III [Arcobacter butzleri RM4018]
gi|315637636|ref|ZP_07892842.1| ribonuclease III [Arcobacter butzleri JV22]
gi|189043289|sp|A8EV88.1|RNC_ARCB4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157699701|gb|ABV67861.1| ribonuclease III [Arcobacter butzleri RM4018]
gi|315478090|gb|EFU68817.1| ribonuclease III [Arcobacter butzleri JV22]
Length = 224
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 23/140 (16%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E ++Y FKNK L+ EALTH S+ + +RLEF+GDA L L + Y++L +P+ + G+
Sbjct: 7 LEKCLDYQFKNKNLIIEALTHKSFKKPYNNERLEFLGDAVLNLIVGEYLYLKFPKSNEGE 66
Query: 99 LSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
LS +RA+ ++ R+A +K G Y F+ + ++E N G
Sbjct: 67 LSKIRASLVNETGFTRLANEIKLGEYIFI----------------STAEERNK----GRT 106
Query: 157 KAPKVLADIVESIAAAIYVD 176
KA +L+D E+I AIY++
Sbjct: 107 KAS-ILSDAFEAIMGAIYLE 125
>gi|337754823|ref|YP_004647334.1| ribonuclease III [Francisella sp. TX077308]
gi|336446428|gb|AEI35734.1| Ribonuclease III [Francisella sp. TX077308]
Length = 230
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 22/138 (15%)
Query: 42 IINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSL 101
I+ YNFKN LL ALTH S T +Y+RLEF+GD+ LG ++ ++L +P L G+LS
Sbjct: 11 ILGYNFKNYTLLVRALTHRSKT-KKNYERLEFLGDSILGFVIAEALYLEFPDLAEGKLSQ 69
Query: 102 LRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKV 161
+R+ + LA + AL+ K+ E+ + E G K K+
Sbjct: 70 IRSKLVKGVTLANL---------------ALNFKLDEYVILGASEQ------GGHKREKI 108
Query: 162 LADIVESIAAAIYVDIDF 179
L D+ E+I AIY+D DF
Sbjct: 109 LEDVFEAIIGAIYLDSDF 126
>gi|308173556|ref|YP_003920261.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7]
gi|384159423|ref|YP_005541496.1| ribonuclease III [Bacillus amyloliquefaciens TA208]
gi|384164142|ref|YP_005545521.1| ribonuclease III [Bacillus amyloliquefaciens LL3]
gi|384168470|ref|YP_005549848.1| ribonuclease III [Bacillus amyloliquefaciens XH7]
gi|307606420|emb|CBI42791.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7]
gi|328553511|gb|AEB24003.1| ribonuclease III [Bacillus amyloliquefaciens TA208]
gi|328911697|gb|AEB63293.1| ribonuclease III [Bacillus amyloliquefaciens LL3]
gi|341827749|gb|AEK89000.1| ribonuclease III [Bacillus amyloliquefaciens XH7]
Length = 249
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I+ +F+N++LL +A THSSY + +RLEF+GDA L L +S ++F YP +
Sbjct: 27 ISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSE 86
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAA + L +A + F V L K +E G
Sbjct: 87 GDLTKLRAAIVCEPSLVSLAHELSFGDLV------LLGKGEEMT-------------GGR 127
Query: 157 KAPKVLADIVESIAAAIYVDIDFD-LQKLWMI----------FRGLLEPIVTLEELQQQP 205
K P +LAD+ E+ A+Y+D + +Q+ + F +++ L+E Q+
Sbjct: 128 KRPALLADVFEAFIGALYLDQGLEPVQQFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRD 187
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+L +K+ + G NR+ A V + G + + K+ A+ +AA+EAL
Sbjct: 188 GKGSLEYKILNEKGPA-------HNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALA 240
Query: 266 KL 267
KL
Sbjct: 241 KL 242
>gi|365853510|ref|ZP_09393777.1| ribonuclease III [Lactobacillus parafarraginis F0439]
gi|363712135|gb|EHL95834.1| ribonuclease III [Lactobacillus parafarraginis F0439]
Length = 229
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 115/242 (47%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
N + ++ LL+EA T +SY + Y+RLEF+GDA L L +S Y+F YP+L
Sbjct: 6 FNIHVDDQDLLDEAFTQASYVNEHRDQNLKFYERLEFLGDAVLQLIVSEYIFTRYPKLPQ 65
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRAA ++ + + A + F K++R + + + A G+
Sbjct: 66 GRLTRLRAAMVNEQSFSTFARECHFNKYIR----------------LGKGEEKA---GAR 106
Query: 157 KAPKVLADIVESIAAAIYVD-----IDFDLQKLWM------IFRGLLEPIVTLEELQQQP 205
+L DI ES A+Y+D ++ +Q++ +F + L+EL Q+
Sbjct: 107 DRDSLLCDIFESFVGALYLDQGKKVVEGFVQQVIFPKLDEGMFAEFFDHKTELQELAQED 166
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
PV + ++L + G + D R + N+A +D + K+ A+ AA++AL+
Sbjct: 167 GPVDIDYELVDEYGPEND----RLFKVNVA---IDHKVLGIGVGHSKKDAEQKAAQQALK 219
Query: 266 KL 267
Sbjct: 220 HF 221
>gi|150390513|ref|YP_001320562.1| ribonuclease III [Alkaliphilus metalliredigens QYMF]
gi|149950375|gb|ABR48903.1| Ribonuclease III [Alkaliphilus metalliredigens QYMF]
Length = 239
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 119/265 (44%), Gaps = 61/265 (23%)
Query: 26 SLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAAL 79
LPS + E+ +I Y FK+K+LL+EALTHSSY + + +RLEF+GD+ L
Sbjct: 8 GLPSVDFEE-------MIQYQFKDKQLLKEALTHSSYANESKVKKIKHNERLEFLGDSVL 60
Query: 80 GLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
G+ +S+Y+F Y L G L+ +RA + L A K F+R
Sbjct: 61 GIIISDYIFKKYTHLPEGDLTKVRANVVCEPALGSCATKINLGGFLRLGR---------- 110
Query: 140 AEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---- 195
E VS G + +LAD E++ A+Y+D + + + + L++ +
Sbjct: 111 GEEVS---------GGRQRESILADAFEALIGALYLDGGMVIAQTF-VLNHLIDSVEQAT 160
Query: 196 ---------VTLEELQQQPQPVTLLFKLCQKNG----KQVDIKHWRKNRKNIASVYVDGS 242
L+EL Q + +++ +++G K D++ V +
Sbjct: 161 KGSLFRDYKTYLQELLQSKHSERITYQVIKESGPDHSKIFDVE-----------VLLGEQ 209
Query: 243 FVASASSEQKEIAKLNAAREALEKL 267
+ + K+ A+ AA+EA+EK+
Sbjct: 210 LLGHGMGKSKKEAEQRAAKEAVEKI 234
>gi|424846628|ref|ZP_18271222.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NW]
gi|356485926|gb|EHI15913.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NW]
Length = 224
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 44/194 (22%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G
Sbjct: 7 LEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ S V++E+N G +
Sbjct: 67 LSKLRAALVNEKSFAKIANSLNLGDFIFMS--------------VAEENN-----GGKEK 107
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ F+ K T+ +L +KN
Sbjct: 108 PSILSDALEAIIGAIHLEAGFEFAK-------------------------TIALRLIEKN 142
Query: 219 GKQVDIKHWRKNRK 232
Q+D K K+ K
Sbjct: 143 FPQIDAKILIKDYK 156
>gi|345304499|ref|YP_004826401.1| ribonuclease 3 [Rhodothermus marinus SG0.5JP17-172]
gi|345113732|gb|AEN74564.1| Ribonuclease 3 [Rhodothermus marinus SG0.5JP17-172]
Length = 260
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 115/258 (44%), Gaps = 48/258 (18%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLALSNYVFLAYP 92
V + + +N L E+ALTH S S +RLEF+GDA LG ++ Y++ +P
Sbjct: 29 VRRLTDLPVRNAALYEQALTHRSVLRGRPDSHLHSNERLEFLGDAVLGFVVAAYLYEHFP 88
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ G L+ LRA ++ E LA+ A + G VR S E E DN +
Sbjct: 89 DRNEGFLTRLRAKLVNREALAQAARRLGLGAHVRLS---------ENMERAGGRDNDS-- 137
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPV-TLL 211
+L+D E++ AIY+D+ + + + + R LL P+ LE L ++P +LL
Sbjct: 138 --------ILSDAFEALVGAIYLDLGLEAARAF-VARALLAPL-DLEALARRPDNYKSLL 187
Query: 212 FKLCQKNGKQVDIKHWRKNRKNIAS-------------VYVDGSFVASASSEQKEIAKLN 258
+ Q G W + R + + ++ + ++ K+ A+
Sbjct: 188 LEFAQARG-------WPQPRYRVVAEEGPSHARTFTVEAWIGNRRLGRGTAGSKKQAEQQ 240
Query: 259 AAREALEKLAQSMPVNCD 276
AAREAL +L + V D
Sbjct: 241 AAREALARLQTAETVEED 258
>gi|288576266|ref|ZP_05978490.2| ribonuclease III [Neisseria mucosa ATCC 25996]
gi|288565937|gb|EFC87497.1| ribonuclease III [Neisseria mucosa ATCC 25996]
Length = 271
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 117/244 (47%), Gaps = 32/244 (13%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++N + Y+FK+ LL++ALTH SY + + +R EF+GD+ L ++ +F A+P+L G+
Sbjct: 46 IQNKLGYHFKDTALLQQALTHRSY-HAKNNERFEFVGDSILNYTVAKMLFDAFPKLTEGE 104
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ ++ LA +A++ + A L G +
Sbjct: 105 LSRLRASLVNEGVLAEIALEMNVGDGLYLGAGELKS-------------------GGFRR 145
Query: 159 PKVLADIVESIAAAIYVDIDF-DLQKLWMIFRGLLEPIVTLEELQQQPQP-VTLLFKLCQ 216
P +LAD +E++ AA+ D DF + +K + R L V + + Q + T L + Q
Sbjct: 146 PSILADAMEAMFAAVSFDADFAEAEK---VVRHLFAERVKRADFKTQGKDNKTALQEALQ 202
Query: 217 -------KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
K + I H + I+ + F+ A +++A+ AA+EAL+ L Q
Sbjct: 203 ARRLALPKYRIEEQIGHANDSMFLISCDLGELGFICKAQGSSRKVAEQQAAKEALQWLEQ 262
Query: 270 SMPV 273
P+
Sbjct: 263 HHPL 266
>gi|433655086|ref|YP_007298794.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum
M0795]
gi|433293275|gb|AGB19097.1| ribonuclease III [Thermoanaerobacterium thermosaccharolyticum
M0795]
Length = 232
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 43/247 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST-----SYQRLEFIGDAALGLALSNYVFLAYPQ 93
+E I Y F NK+LL+ AL HSS+ + + S +RLEF+GD+ L + +S Y++ +
Sbjct: 10 LEKNIGYVFNNKKLLKNALAHSSWANESKNIGISNERLEFLGDSVLSIIISEYLYKSRSD 69
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
L+ G LS R+ + LAR A + K++ L K +E ++E
Sbjct: 70 LEEGYLSKYRSEIVCEPSLARCAREIELGKYL------LMGKGEEMTGGRNRES------ 117
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFD------LQKLWMIFRGLLEPIV------TLEEL 201
+LAD +E++ AAIY+D D L+ I + +L ++ L+E+
Sbjct: 118 -------ILADAMEALIAAIYLDSDLKTASDIVLRLFDEIIKEVLSGLIYRDYKTKLQEV 170
Query: 202 QQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
Q+ +++KL + G N+ + VYV G+ + K+ A+ AA
Sbjct: 171 TQKMGSEKIIYKLTDEYGPD-------HNKMFVIEVYVGGNRLGRGMGRSKKEAEQYAAM 223
Query: 262 EALEKLA 268
EAL K+
Sbjct: 224 EALSKMG 230
>gi|388857965|emb|CCF48410.1| related to cell cycle control protein dicer [Ustilago hordei]
Length = 1752
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 87/170 (51%), Gaps = 12/170 (7%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDST--SYQRLEFIGDAALGLALSNYVFL---AYP 92
+++++ ++ ++ L E+ TH S S SYQRLEF+GDA + + + ++
Sbjct: 1339 HLQSLFSHTYRYPHLALESFTHPSLLASILPSYQRLEFLGDAWIDFFIVSRIYTEGGGLV 1398
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ------- 145
LDPG+++ L+ S L+ + VK G +KF+ ++A L + + ++ + + +
Sbjct: 1399 VLDPGEMTALKGVLASNAALSALGVKLGLHKFIASNSAVLVESIAKYGKGLEKVLRKGGG 1458
Query: 146 EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195
E G ++ PK +AD+VE+ A+I VD FD +F + P
Sbjct: 1459 EGQYWTKAGMVQVPKAVADVVEASFASIVVDSGFDQDTAQRVFGRIFTPF 1508
>gi|373857288|ref|ZP_09600030.1| ribonuclease III [Bacillus sp. 1NLA3E]
gi|372452938|gb|EHP26407.1| ribonuclease III [Bacillus sp. 1NLA3E]
Length = 260
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 119/249 (47%), Gaps = 43/249 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+ + F++ LL++A THSSY + +RLEF+GDA L L +S +++ YP +
Sbjct: 27 LGFEFQDSNLLKQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTVSQFLYKKYPLMSE 86
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRAA + L A + F + V L K +E GG
Sbjct: 87 GELTKLRAAVVCEPSLVFFANELFFGQLV------LLGKGEELT------------GGRA 128
Query: 157 KAPKVLADIVESIAAAIYVD--IDFDLQKLWMI---------FRGLLEPIVTLEELQQQP 205
+ P +LAD+ E+ A+Y+D ID ++ L I F +++ L+EL Q+
Sbjct: 129 R-PALLADVFEAFIGALYLDKGIDVVIEFLEKIVFPKINAGAFSHVMDYKSQLQELVQRD 187
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+ +K+ + G NR+ ++ V + G + + + K+ A+ +AA+ ALE
Sbjct: 188 GTGMIEYKVLHEKGPA-------HNREFVSRVSLSGDELGTGTGRSKKEAEQHAAQMALE 240
Query: 266 KLAQSMPVN 274
KL +S N
Sbjct: 241 KLKKSFIQN 249
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K +L EL + YK+ ++GP+H+++F+S V ++ + TG +S+ K+AE
Sbjct: 177 KSQLQELVQRDGTGMIEYKVLHEKGPAHNREFVSRVSLSGDE---LGTGTGRSK-KEAEQ 232
Query: 354 SAASMMLRALRES 366
AA M L L++S
Sbjct: 233 HAAQMALEKLKKS 245
>gi|313114998|ref|ZP_07800491.1| ribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
gi|310622689|gb|EFQ06151.1| ribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
Length = 224
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 49/247 (19%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSY-----QRLEFIGDAALGLALSNYVFLAYPQ 93
+E II Y FKN LLE ALTH+SY + + +RLEF+GD+ L + ++Y+F AY
Sbjct: 5 LETIIGYKFKNPELLEIALTHTSYANESRTPVKHNERLEFLGDSVLQIVSADYLFHAYAD 64
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
G L+ +RA+ +S L ++F A + + E+ E+ G
Sbjct: 65 RPEGDLTRIRASLVSEGAL---------FQF------AQEIDLGEYLRLGRGEERC---G 106
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT------------LEEL 201
G + P V++D E++ AA+Y+D D+ + +++ P +T L+E+
Sbjct: 107 GRTR-PSVVSDAFEALIAALYLDGGMDVARSFIL------PFITEGKHAEADYKTRLQEI 159
Query: 202 QQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
QQ L + + ++G D KH+ + +V + VA K+ A+ AA+
Sbjct: 160 VQQNPEERLSYVVESESGPDHD-KHF------VVAVRFNSDRVARGEGRSKKAAEQCAAK 212
Query: 262 EALEKLA 268
EAL+ L
Sbjct: 213 EALKLLG 219
>gi|296113914|ref|YP_003627852.1| ribonuclease III [Moraxella catarrhalis RH4]
gi|295921608|gb|ADG61959.1| ribonuclease III [Moraxella catarrhalis BBH18]
Length = 266
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 19/134 (14%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
+ Y FK+ LL ALTH SY SY+RLEF+GDA L ++ +F YP+ D G+L+ +
Sbjct: 43 LGYTFKDVSLLCRALTHRSYDPKKSYERLEFLGDALLSSIITKALFAQYPKHDEGKLTRM 102
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
RAA + E L ++A + RH + ++ GG +L
Sbjct: 103 RAALVRQETLVQIA---DHLELSRHLILGVGER----------------KGGGRHRASIL 143
Query: 163 ADIVESIAAAIYVD 176
AD VE++ AA+Y+D
Sbjct: 144 ADAVEALIAAVYLD 157
>gi|385264719|ref|ZP_10042806.1| ribonuclease III [Bacillus sp. 5B6]
gi|385149215|gb|EIF13152.1| ribonuclease III [Bacillus sp. 5B6]
Length = 253
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I+ +F+N++LL +A THSSY + +RLEF+GDA L L +S ++F YP +
Sbjct: 31 ISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSE 90
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAA + L +A + F V L K +E G
Sbjct: 91 GDLTKLRAAIVCEPSLVSLAHELSFGDLV------LLGKGEEMT-------------GGR 131
Query: 157 KAPKVLADIVESIAAAIYVDIDFD-LQKLWMI----------FRGLLEPIVTLEELQQQP 205
K P +LAD+ E+ A+Y+D + +Q+ + F +++ L+E Q+
Sbjct: 132 KRPALLADVFEAFIGALYLDQGLEPVQQFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRD 191
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+L +K+ + G NR+ A V + G + + K+ A+ +AA+EAL
Sbjct: 192 GKGSLEYKILNEKGPA-------HNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALA 244
Query: 266 KL 267
K+
Sbjct: 245 KM 246
>gi|268608881|ref|ZP_06142608.1| ribonuclease III [Ruminococcus flavefaciens FD-1]
Length = 229
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 124/247 (50%), Gaps = 47/247 (19%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD-----STSYQRLEFIGDAALGLALSNYVF--LAYP 92
ENII Y FKNK L+E+AL+HSSY + S +RLEF+GD+ L + +S+Y++ + P
Sbjct: 8 ENIIGYTFKNKELIEQALSHSSYANEKKRAGGSNERLEFLGDSVLSIVVSDYLYKNINVP 67
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ G+L+ +RA+ + + L FV A ++ EF E+NT
Sbjct: 68 E---GELTKMRASLVCEKSL-----------FV----FAQQIELGEFLHLGKGEENT--- 106
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPV---- 208
G + P +LAD E++ AAIY+D + I R + E I ++ +PV
Sbjct: 107 -GGRERPSILADAFEAVIAAIYLDGGME-AAAKHILRFMPEDI------KRTKKPVLSDF 158
Query: 209 -TLLFKLCQKNGKQ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
TLL ++ QKN ++ + + N++ + V ++ + + K+ A+ AA+
Sbjct: 159 KTLLQEVVQKNPEEKVEYVLIGEEGPDHNKRFVVEVCLNSQVIGKGKGKSKKEAEQLAAK 218
Query: 262 EALEKLA 268
EALE +
Sbjct: 219 EALELMG 225
>gi|416156636|ref|ZP_11604675.1| ribonuclease III [Moraxella catarrhalis 101P30B1]
gi|416225814|ref|ZP_11626993.1| ribonuclease III [Moraxella catarrhalis 103P14B1]
gi|416233905|ref|ZP_11629503.1| ribonuclease III [Moraxella catarrhalis 12P80B1]
gi|416245733|ref|ZP_11634652.1| ribonuclease III [Moraxella catarrhalis BC8]
gi|416256350|ref|ZP_11639661.1| ribonuclease III [Moraxella catarrhalis O35E]
gi|326560591|gb|EGE10972.1| ribonuclease III [Moraxella catarrhalis 103P14B1]
gi|326565582|gb|EGE15745.1| ribonuclease III [Moraxella catarrhalis 12P80B1]
gi|326572025|gb|EGE22027.1| ribonuclease III [Moraxella catarrhalis BC8]
gi|326573972|gb|EGE23922.1| ribonuclease III [Moraxella catarrhalis O35E]
gi|326574964|gb|EGE24894.1| ribonuclease III [Moraxella catarrhalis 101P30B1]
Length = 262
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 19/134 (14%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
+ Y FK+ LL ALTH SY SY+RLEF+GDA L ++ +F YP+ D G+L+ +
Sbjct: 39 LGYTFKDVSLLCRALTHRSYDPKKSYERLEFLGDALLSSIITKALFAQYPKHDEGKLTRM 98
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
RAA + E L ++A + RH + ++ GG +L
Sbjct: 99 RAALVRQETLVQIA---DHLELSRHLILGVGER----------------KGGGRHRASIL 139
Query: 163 ADIVESIAAAIYVD 176
AD VE++ AA+Y+D
Sbjct: 140 ADAVEALIAAVYLD 153
>gi|340362287|ref|ZP_08684677.1| ribonuclease III [Neisseria macacae ATCC 33926]
gi|339887626|gb|EGQ77168.1| ribonuclease III [Neisseria macacae ATCC 33926]
Length = 271
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 117/244 (47%), Gaps = 32/244 (13%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++N + Y+FK+ LL++ALTH SY + + +R EF+GD+ L ++ +F A+P+L G+
Sbjct: 46 IQNKLGYHFKDTALLQQALTHRSY-HAKNNERFEFVGDSILNYTVAKMLFDAFPKLTEGE 104
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ ++ LA +A++ + A L G +
Sbjct: 105 LSRLRASLVNEGVLAEIALEMNVGDGLYLGAGELKS-------------------GGFRR 145
Query: 159 PKVLADIVESIAAAIYVDIDF-DLQKLWMIFRGLLEPIVTLEELQQQPQP-VTLLFKLCQ 216
P +LAD +E++ AA+ D DF + +K + R L V + + Q + T L + Q
Sbjct: 146 PSILADAMEAMFAAVSFDADFAEAEK---VVRHLFAERVKRADFKTQGKDNKTALQEALQ 202
Query: 217 -------KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
K + I H + I+ + F+ A +++A+ AA+EAL+ L Q
Sbjct: 203 ARRLALPKYRIEEQIGHANDSMFLISCDLGELGFICKAQGSSRKVAEQQAAKEALQWLEQ 262
Query: 270 SMPV 273
P+
Sbjct: 263 HHPL 266
>gi|349609319|ref|ZP_08888717.1| ribonuclease 3 [Neisseria sp. GT4A_CT1]
gi|348612313|gb|EGY61934.1| ribonuclease 3 [Neisseria sp. GT4A_CT1]
Length = 239
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 30/243 (12%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++N + Y+FK+ LL++ALTH SY + + +R EF+GD+ L ++ +F A+P+L G+
Sbjct: 14 IQNKLGYHFKDTALLQQALTHRSY-HAKNNERFEFVGDSILNYTVAKMLFDAFPKLTEGE 72
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ ++ LA +A++ + A L G +
Sbjct: 73 LSRLRASLVNEGVLAEIALEMNVGDGLYLGAGELKS-------------------GGFRR 113
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP-VTLLFKLCQ- 216
P +LAD +E++ AA+ D DF + + R L V + + Q + T L + Q
Sbjct: 114 PSILADAMEAMFAAVSFDADF--AEAEKVVRHLFAERVKRADFKTQGKDNKTALQEALQA 171
Query: 217 ------KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270
K + I H + I+ + F+ A +++A+ AA+EAL+ L Q
Sbjct: 172 RRLALPKYRIEEQIGHANDSMFLISCDLGELGFICKAQGSSRKVAEQQAAKEALQWLEQH 231
Query: 271 MPV 273
P+
Sbjct: 232 HPL 234
>gi|375362237|ref|YP_005130276.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|421731737|ref|ZP_16170860.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|451347036|ref|YP_007445667.1| ribonuclease III [Bacillus amyloliquefaciens IT-45]
gi|371568231|emb|CCF05081.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum CAU
B946]
gi|407073950|gb|EKE46940.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|449850794|gb|AGF27786.1| ribonuclease III [Bacillus amyloliquefaciens IT-45]
Length = 249
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 112/242 (46%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I+ +F+N++LL +A THSSY + +RLEF+GDA L L +S ++F YP +
Sbjct: 27 ISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSE 86
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAA + L +A + F V L K +E G
Sbjct: 87 GDLTKLRAAIVCEPSLVSLAHELSFGDLV------LLGKGEEMT-------------GGR 127
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQP 205
K P +LAD+ E+ A+Y+D + + ++ F +++ L+E Q+
Sbjct: 128 KRPALLADVFEAFIGALYLDQGLEPVQQFLKEYVFPKINDGAFSHVMDFKSQLQEFVQRD 187
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+L +K+ + G NR+ A V + G + + K+ A+ +AA+EAL
Sbjct: 188 GKGSLEYKILNEKGPA-------HNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALA 240
Query: 266 KL 267
KL
Sbjct: 241 KL 242
>gi|207092393|ref|ZP_03240180.1| ribonuclease III [Helicobacter pylori HPKX_438_AG0C1]
Length = 239
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 116/246 (47%), Gaps = 42/246 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S + ++A ++R S++ K +E
Sbjct: 81 LSKLRASIVSAQGFTKLAKVISLQDYLRVSSSEEISKGRE-------------------K 121
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI--------------VTLEELQQQ 204
P +L+ E++ A +Y++ L K+ I + LL L+EL Q
Sbjct: 122 PSILSSAFEALMAGVYLEA--GLAKVRKIMQNLLNRAYKRLDLEHLSVDYKTALQELTQA 179
Query: 205 PQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 264
V ++L ++ G +++ ++Y+ A+A + K+ A+ A AL
Sbjct: 180 QFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYYAL 232
Query: 265 EKLAQS 270
+KL ++
Sbjct: 233 QKLKEA 238
>gi|398310689|ref|ZP_10514163.1| ribonuclease III [Bacillus mojavensis RO-H-1]
Length = 249
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I+ +F+N++LL +A THSSY + +RLEF+GDA L L +S ++F YP +
Sbjct: 27 ISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLFAKYPAMSE 86
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAA + L +A + F V L K +E G
Sbjct: 87 GDLTKLRAAIVCEPSLVSLAHELSFGDLV------LLGKGEEMT-------------GGR 127
Query: 157 KAPKVLADIVESIAAAIYVDIDFD----LQKLWMI-------FRGLLEPIVTLEELQQQP 205
K P +LAD+ E+ A+Y+D + K+++ F +++ L+E Q+
Sbjct: 128 KRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQLQEYVQRD 187
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+L +K+ + G NR+ A V + G + + K+ A+ +AA+EAL
Sbjct: 188 GKGSLEYKISNEKGPA-------HNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALA 240
Query: 266 KL 267
KL
Sbjct: 241 KL 242
>gi|305674324|ref|YP_003865996.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23]
gi|305412568|gb|ADM37687.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23]
Length = 249
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I+ +F+N++LL +A THSSY + +RLEF+GDA L L +S ++F YP +
Sbjct: 27 ISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLFAKYPAMSE 86
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAA + L +A + F V L K +E G
Sbjct: 87 GDLTKLRAAIVCEPSLVSLAHELSFGDLV------LLGKGEEMT-------------GGR 127
Query: 157 KAPKVLADIVESIAAAIYVDIDFD----LQKLWMI-------FRGLLEPIVTLEELQQQP 205
K P +LAD+ E+ A+Y+D + K+++ F +++ L+E Q+
Sbjct: 128 KRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQLQEYVQRD 187
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+L +K+ + G NR+ A V + G + + K+ A+ +AA+EAL
Sbjct: 188 GKGSLEYKITNEKGPA-------HNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALA 240
Query: 266 KL 267
KL
Sbjct: 241 KL 242
>gi|384265175|ref|YP_005420882.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387898172|ref|YP_006328468.1| ribonuclease III [Bacillus amyloliquefaciens Y2]
gi|380498528|emb|CCG49566.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387172282|gb|AFJ61743.1| ribonuclease III [Bacillus amyloliquefaciens Y2]
Length = 249
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 113/242 (46%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I+ +F+N++LL +A THSSY + +RLEF+GDA L L +S ++F YP +
Sbjct: 27 ISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLFAKYPAMSE 86
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAA + L +A + F V L K +E G
Sbjct: 87 GDLTKLRAAIVCEPSLVSLAHELSFGDLV------LLGKGEEMT-------------GGR 127
Query: 157 KAPKVLADIVESIAAAIYVDIDFD-LQKLWMI----------FRGLLEPIVTLEELQQQP 205
K P +LAD+ E+ A+Y+D + +Q+ + F +++ L+E Q+
Sbjct: 128 KRPALLADVFEAFIGALYLDQGLEPVQQFLKVYVFPKINDGAFSHVMDFKSQLQEFVQRD 187
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+L +K+ + G NR+ A V + G + + K+ A+ +AA+EAL
Sbjct: 188 GKGSLEYKILNEKGPA-------HNREFEALVSLKGEALGIGNGRSKKEAEQHAAQEALA 240
Query: 266 KL 267
K+
Sbjct: 241 KM 242
>gi|375089330|ref|ZP_09735657.1| ribonuclease III [Facklamia languida CCUG 37842]
gi|374567106|gb|EHR38337.1| ribonuclease III [Facklamia languida CCUG 37842]
Length = 231
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 119/252 (47%), Gaps = 43/252 (17%)
Query: 32 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSN 85
M++ + Y+ + N +L+E+A H+SY + S +RLEF+GDA L LA+SN
Sbjct: 1 MKELMTYISEDLGIKVNNPQLIEQAFHHTSYVNEHGGSHLASNERLEFLGDAVLELAVSN 60
Query: 86 YVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ 145
+++ YP+ G L+ +RA + LA V+ + F F+R E A SQ
Sbjct: 61 FLYSTYPREGEGVLTRMRAQLVREPSLAYVSRQLKFDHFLRLGKG-------EQATGGSQ 113
Query: 146 EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM----------IFRGLLEPI 195
D+ +L+D E+ AAIY+D D + ++ I R +
Sbjct: 114 RDS------------ILSDCFEAFLAAIYLDQGSDQAEAFLSRVLFDHHQEILRLTNQDY 161
Query: 196 VT-LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEI 254
T +E Q V + ++L + G D R + ++++G +A S + K+
Sbjct: 162 KTQFQEWVQAKGSVKIEYRLLDQTGPAHD-------RCFTSGLFLNGQQIAQGSGKSKKQ 214
Query: 255 AKLNAAREALEK 266
A+++AA++AL++
Sbjct: 215 AEMHAAKQALDQ 226
>gi|253827732|ref|ZP_04870617.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
gi|313141944|ref|ZP_07804137.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
gi|253511138|gb|EES89797.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
gi|313130975|gb|EFR48592.1| ribonuclease III [Helicobacter canadensis MIT 98-5491]
Length = 224
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 112/232 (48%), Gaps = 28/232 (12%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
+ Y+F N+ LL+EALTH S ST +RLEF+GDA L L + +++ +P G+LS +
Sbjct: 10 LGYHFSNQNLLQEALTHKSAKKSTHNERLEFLGDAVLDLIIGEFLYKKFPHSPEGELSKM 69
Query: 103 RAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
RA+ ++ + A++A + G Y ++ H S+E N SI
Sbjct: 70 RASMVNEKAFAKIARYLNIGEYLYISH----------------SEEQNNGREKDSI---- 109
Query: 161 VLADIVESIAAAIYVDIDFD-LQKLWMIFRGLLEPIVTLEEL----QQQPQPVTLLFKLC 215
L++ E+I AIY++ + +Q + + +L P + LE L + Q +T
Sbjct: 110 -LSNAFEAIVGAIYLESGLEKVQTIVLKILDILYPKIDLENLFYDYKTSLQELTQALFGI 168
Query: 216 QKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+D K N++ + V++ A A + K+ A+ N A+ AL+ L
Sbjct: 169 TPEYVVLDSKGPDHNKEFLMGVFIQNKEYAQAKGKSKKEAQQNCAKIALKIL 220
>gi|255066864|ref|ZP_05318719.1| ribonuclease III [Neisseria sicca ATCC 29256]
gi|419797125|ref|ZP_14322625.1| ribonuclease III [Neisseria sicca VK64]
gi|255048939|gb|EET44403.1| ribonuclease III [Neisseria sicca ATCC 29256]
gi|385698701|gb|EIG29047.1| ribonuclease III [Neisseria sicca VK64]
Length = 239
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 30/243 (12%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++N + Y+FK+ LL++ALTH SY + + +R EF+GD+ L ++ +F A+P+L G+
Sbjct: 14 IQNKLGYHFKDTALLQQALTHRSY-HAKNNERFEFVGDSILNYTVAKMLFDAFPKLTEGE 72
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ ++ LA +A++ + A L G +
Sbjct: 73 LSRLRASLVNEGVLAEIALEMNVGDGLYLGAGELKS-------------------GGFRR 113
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP-VTLLFKLCQ- 216
P +LAD +E++ AA+ D DF + + R L V + + Q + T L + Q
Sbjct: 114 PSILADAMEAMFAAVSFDADF--AEAEKVVRHLFAERVKRADFKTQGKDNKTALQEALQA 171
Query: 217 ------KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270
K + I H + I+ + F+ A +++A+ AA+EAL+ L Q
Sbjct: 172 RRLALPKYRIEEQIGHANDSMFLISCDLGELGFICKAQGSSRKVAEQQAAKEALQWLEQH 231
Query: 271 MPV 273
P+
Sbjct: 232 HPL 234
>gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
gi|221309468|ref|ZP_03591315.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
gi|221313793|ref|ZP_03595598.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. NCIB 3610]
gi|221318717|ref|ZP_03600011.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. JH642]
gi|221322988|ref|ZP_03604282.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. SMY]
gi|321315359|ref|YP_004207646.1| ribonuclease III [Bacillus subtilis BSn5]
gi|384175334|ref|YP_005556719.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|386758316|ref|YP_006231532.1| ribonuclease III [Bacillus sp. JS]
gi|402775838|ref|YP_006629782.1| ribonuclease III [Bacillus subtilis QB928]
gi|418033261|ref|ZP_12671738.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. SC-8]
gi|428279187|ref|YP_005560922.1| ribonuclease III [Bacillus subtilis subsp. natto BEST195]
gi|430758984|ref|YP_007209705.1| Ribonuclease III Rnc [Bacillus subtilis subsp. subtilis str. BSP1]
gi|443632739|ref|ZP_21116918.1| ribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|449094285|ref|YP_007426776.1| ribonuclease III [Bacillus subtilis XF-1]
gi|452914014|ref|ZP_21962641.1| ribonuclease III [Bacillus subtilis MB73/2]
gi|7531275|sp|P51833.2|RNC_BACSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|2633965|emb|CAB13466.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
gi|291484144|dbj|BAI85219.1| ribonuclease III [Bacillus subtilis subsp. natto BEST195]
gi|320021633|gb|ADV96619.1| ribonuclease III [Bacillus subtilis BSn5]
gi|349594558|gb|AEP90745.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|351469409|gb|EHA29585.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. SC-8]
gi|384931598|gb|AFI28276.1| ribonuclease III [Bacillus sp. JS]
gi|402481020|gb|AFQ57529.1| Ribonuclease III [Bacillus subtilis QB928]
gi|407958999|dbj|BAM52239.1| ribonuclease III [Synechocystis sp. PCC 6803]
gi|407964576|dbj|BAM57815.1| ribonuclease III [Bacillus subtilis BEST7003]
gi|430023504|gb|AGA24110.1| Ribonuclease III Rnc [Bacillus subtilis subsp. subtilis str. BSP1]
gi|443347562|gb|ELS61620.1| ribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|449028200|gb|AGE63439.1| ribonuclease III [Bacillus subtilis XF-1]
gi|452116434|gb|EME06829.1| ribonuclease III [Bacillus subtilis MB73/2]
Length = 249
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I+ +F+N++LL +A THSSY + +RLEF+GDA L L +S ++F YP +
Sbjct: 27 ISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLFAKYPAMSE 86
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAA + L +A + F V L K +E G
Sbjct: 87 GDLTKLRAAIVCEPSLVSLAHELSFGDLV------LLGKGEEMT-------------GGR 127
Query: 157 KAPKVLADIVESIAAAIYVDIDFD----LQKLWMI-------FRGLLEPIVTLEELQQQP 205
K P +LAD+ E+ A+Y+D + K+++ F +++ L+E Q+
Sbjct: 128 KRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQLQEYVQRD 187
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+L +K+ + G NR+ A V + G + + K+ A+ +AA+EAL
Sbjct: 188 GKGSLEYKISNEKGPA-------HNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALA 240
Query: 266 KL 267
KL
Sbjct: 241 KL 242
>gi|350265905|ref|YP_004877212.1| ribonuclease III [Bacillus subtilis subsp. spizizenii TU-B-10]
gi|349598792|gb|AEP86580.1| ribonuclease III [Bacillus subtilis subsp. spizizenii TU-B-10]
Length = 249
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I+ +F+N++LL +A THSSY + +RLEF+GDA L L +S ++F YP +
Sbjct: 27 ISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLFAKYPAMSE 86
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAA + L +A + F V L K +E G
Sbjct: 87 GDLTKLRAAIVCEPSLVSLAHELSFGDLV------LLGKGEEMT-------------GGR 127
Query: 157 KAPKVLADIVESIAAAIYVDIDFD----LQKLWMI-------FRGLLEPIVTLEELQQQP 205
K P +LAD+ E+ A+Y+D + K+++ F +++ L+E Q+
Sbjct: 128 KRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVMDFKSQLQEYVQRD 187
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+L +K+ + G NR+ A V + G + + K+ A+ +AA+EAL
Sbjct: 188 GKGSLEYKISNEKGPA-------HNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALA 240
Query: 266 KL 267
KL
Sbjct: 241 KL 242
>gi|336270596|ref|XP_003350057.1| hypothetical protein SMAC_00946 [Sordaria macrospora k-hell]
gi|380095449|emb|CCC06922.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1586
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 24/177 (13%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS----TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+ Y FK+ RLL A H +Y SYQRLEF+GDA + +Y+F +P DP
Sbjct: 1265 MGYKFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFPAADPQW 1324
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFV-RHSAAALDD---KVKEFAEAVSQEDNTAVYGG 154
L+ + A +S + L ++ GFYK V S + L D V E EA+ AV G
Sbjct: 1325 LTEHKMAMVSNQFLCCLSYHLGFYKCVATMSPSILKDIAEYVTEIEEALEAAKQEAVNQG 1384
Query: 155 SI----------------KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195
+ PK L+D+VE+ AI+VD ++D + F + P
Sbjct: 1385 KAPEEYSRDYWVHITHVSRLPKCLSDVVEAYIGAIFVDSEYDYSVVQQFFTTHVLPF 1441
>gi|268318202|ref|YP_003291921.1| ribonuclease III [Rhodothermus marinus DSM 4252]
gi|262335736|gb|ACY49533.1| ribonuclease III [Rhodothermus marinus DSM 4252]
Length = 260
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 115/258 (44%), Gaps = 48/258 (18%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLALSNYVFLAYP 92
V + + +N L E+ALTH S S +RLEF+GDA LG ++ Y++ +P
Sbjct: 29 VRRLTDLPVRNAALYEQALTHRSVLRGQPDSHLHSNERLEFLGDAVLGFVVAAYLYEHFP 88
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ G L+ LRA ++ E LA+ A + G VR S E E DN +
Sbjct: 89 DRNEGFLTRLRAKLVNREALAQAARRLGLGAHVRLS---------ENMERAGGRDNDS-- 137
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPV-TLL 211
+L+D E++ AIY+D+ + + + + R LL P+ LE L ++P +LL
Sbjct: 138 --------ILSDAFEALVGAIYLDLGLEAARAF-VERALLAPL-DLEALARRPDNYKSLL 187
Query: 212 FKLCQKNGKQVDIKHWRKNRKNIAS-------------VYVDGSFVASASSEQKEIAKLN 258
+ Q G W + R + + ++ + ++ K+ A+
Sbjct: 188 LEFAQARG-------WPQPRYRVVAEEGPSHARTFTVEAWIGNRRLGRGTAGSKKQAEQQ 240
Query: 259 AAREALEKLAQSMPVNCD 276
AAREAL +L + V D
Sbjct: 241 AAREALARLQATETVEED 258
>gi|114706260|ref|ZP_01439162.1| ribonuclease III [Fulvimarina pelagi HTCC2506]
gi|114538121|gb|EAU41243.1| ribonuclease III [Fulvimarina pelagi HTCC2506]
Length = 234
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 92/195 (47%), Gaps = 33/195 (16%)
Query: 39 VENIINYNFKNKRLLEEALTHSSY----TDSTSYQRLEFIGDAALGLALSNYVFLAYPQL 94
+E I F + L+ ALTHSS+ D SY+RLEF+GD LGL +++ +F +P
Sbjct: 11 LEKRIGVRFSDHDRLQRALTHSSFRSSKGDGRSYERLEFLGDRVLGLVVADKLFEMFPNA 70
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
D G+LSL + ++ E A VA + G Y+FVR +++ A +
Sbjct: 71 DEGELSLRLNSLVNAETCAAVADEIGLYEFVRQGG-----DLRKLAAS------------ 113
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFD----------LQKLWMIFRGLLEPIVTLEELQQQ 204
+ + AD++ES+ AAIY++ D ++L +P L+E Q
Sbjct: 114 --RTKSIRADLMESLIAAIYLNSGLDDARAFIESHWGERLNKSVAARRDPKTALQEWAHQ 171
Query: 205 PQPVTLLFKLCQKNG 219
P +++ ++G
Sbjct: 172 RGPEPPKYEVVDRSG 186
>gi|402829248|ref|ZP_10878124.1| ribonuclease III [Slackia sp. CM382]
gi|402284229|gb|EJU32732.1| ribonuclease III [Slackia sp. CM382]
Length = 312
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 30/246 (12%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALS 84
+PE + +++I F + +L A+TH S T+ SY+RLEF+GD+ LG ++
Sbjct: 4 TPEQSAKLDLAQHVIGVAFDDIDILLAAITHPSATEGKPVKFSYERLEFLGDSILGAIVA 63
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS 144
N F AYP++D G L+ ++ A +S L+ VA K GF + S
Sbjct: 64 NEAFHAYPEIDEGGLTRIKVALVSGSSLSDVAAKLGFADIIVFG---------------S 108
Query: 145 QEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQ 204
E T G L ++ E++ AA+++D D + ++ R L P + +E ++
Sbjct: 109 SERGTGRRG----LHSALENVYEAVVAALFLDKGMDGARDFV--RRTLIPRMDIEMAREP 162
Query: 205 PQPVTLLFKLCQKNG-----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNA 259
P + L + Q+ G K V+ + +R ++ V+ + +A K+ ++ A
Sbjct: 163 ENPKSALQEKLQEEGITPTYKLVETQGPPHDRTFVSQVFAGLTALAQGIGRTKKESESQA 222
Query: 260 AREALE 265
A+ AL+
Sbjct: 223 AKAALD 228
>gi|187251071|ref|YP_001875553.1| ribonuclease III [Elusimicrobium minutum Pei191]
gi|186971231|gb|ACC98216.1| Ribonuclease III [Elusimicrobium minutum Pei191]
Length = 221
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 118/243 (48%), Gaps = 42/243 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSY----QRLEFIGDAALGLALSNYVFLAYPQL 94
+E +++Y+FKNK L+ EALTH S+T +RLEF+GD+ LGL + Y++ YP++
Sbjct: 5 IEQVLDYSFKNKELIREALTHKSFTGERRSVKHNERLEFLGDSVLGLVAAEYIYSKYPEV 64
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
+ G LS +++ +S +H Y + A+ LD ++ A GG
Sbjct: 65 EEGVLSKIKSGLVS---------RHNLYLW----ASELD-----LGAYLALGAGEAATGG 106
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFDLQK----LWMIFRGLLEPI----VTLEELQQQPQ 206
+ +L++ +E++ A+Y+D F+ K W+ + L E TL+E+ Q+
Sbjct: 107 RTR-ESILSNAMEAVLGAVYLDGGFESVKNIINKWISTQSLTEVSSDYKSTLQEIVQKKY 165
Query: 207 PVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDG--SFVASASSEQKEIAKLNAAREAL 264
+++ Q G + + I +V V + + K++A+ +AA+ AL
Sbjct: 166 KSVPEYEVIQTVGPE---------HEKIFTVVVSSLKKELGRGRGKNKKLAEQDAAKNAL 216
Query: 265 EKL 267
E L
Sbjct: 217 ENL 219
>gi|91201952|emb|CAJ75012.1| similar to ribonuclease III [Candidatus Kuenenia stuttgartiensis]
Length = 236
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 120/248 (48%), Gaps = 51/248 (20%)
Query: 40 ENIINYNFKNKRLLEEALTHSS--YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
+NII Y+FK LLE+ALTH+S ++ S +RLEF+GDA LG+ +S+Y++ P G
Sbjct: 17 QNIIGYSFKKMLLLEKALTHTSCRVENNFSNERLEFLGDAVLGMIISDYLYKTMPHYSEG 76
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157
+L+ +++ +S LA+V ++ G +F+ L+D+ +
Sbjct: 77 ELTNVKSVVVSQSTLAKVGMEAGLKEFLL-VGRGLNDR-------------------DLF 116
Query: 158 APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI-------------VTLEELQQQ 204
+LA++ E++ AAIY+D + + + R L + I L++ Q+
Sbjct: 117 PKSLLANVFEALIAAIYIDGGIEAASEFTL-RYLKKEIDLVCKNQHKKNYKSILQQYSQK 175
Query: 205 PQPVTLLFKLCQK----NGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
+T ++L Q+ +GK +I V + GS + K+ A+ +AA
Sbjct: 176 EYGITPTYRLLQQIGPDHGKSFEI-----------VVSIKGSEYGRGWGKSKKEAEQSAA 224
Query: 261 REALEKLA 268
+EAL+ L
Sbjct: 225 KEALKILT 232
>gi|377809761|ref|YP_005004982.1| ribonuclease III [Pediococcus claussenii ATCC BAA-344]
gi|361056502|gb|AEV95306.1| ribonuclease III [Pediococcus claussenii ATCC BAA-344]
Length = 232
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 113/242 (46%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
N +F N LL+EA T +SY + Y+R+EF+GDA L + +S Y+F YP++
Sbjct: 13 FNIHFNNHDLLDEAFTQASYVNEHPNQGLKFYERIEFLGDAVLQIVVSEYLFKRYPEMPQ 72
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRAA + + + A + F +++R E +S G+
Sbjct: 73 GKLTRLRAAMVKEDSFSDFAKECHFDRYIRLGK----------GEELS---------GAR 113
Query: 157 KAPKVLADIVESIAAAIYVDIDFD-----LQKLWM------IFRGLLEPIVTLEELQQQP 205
+ +L DI ES A+Y+D D +QK+ F +++ L+E+ Q
Sbjct: 114 QRSSLLCDIFESFTGALYLDQGRDAVEEFVQKVIFPKLDEGRFDHVIDHKSELQEVLQVH 173
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
V + ++L + G + D R + DG ++ K++A+ NAA +AL+
Sbjct: 174 GDVDIDYQLIAETGGEND-------RVFEVELIADGKKLSRGKGTSKKLAEQNAANKALQ 226
Query: 266 KL 267
++
Sbjct: 227 QI 228
>gi|307244287|ref|ZP_07526402.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678]
gi|306492437|gb|EFM64475.1| ribonuclease III [Peptostreptococcus stomatis DSM 17678]
Length = 235
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 120/250 (48%), Gaps = 29/250 (11%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS----TSYQRLEFIGDAALGLALS 84
S + +++ E I Y FKNK ++ ALTHSS+ + +RLEF+GD+ LGL +S
Sbjct: 5 SDVIRESIRAFEEKIGYEFKNKTYIQTALTHSSFANEHKEFNYNERLEFLGDSVLGLVVS 64
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS 144
+Y+F A L G+L+ LRA + E L+ VA K L D + +
Sbjct: 65 DYLFRARNDLPEGKLTRLRANVVCEESLSAVARK-----------INLGDHL-----FLG 108
Query: 145 QEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQ 204
+ + T+ GGS + +LAD E++ AAIY+D FD K + I L + I +
Sbjct: 109 KGEKTS--GGSDR-DSILADATEAVIAAIYLDGGFDQAKDF-ILSNLRDTIAKNIDGNIF 164
Query: 205 PQPVTLLFKLCQKNGKQVDIKHWRK-----NRKNIASVYVDGSFVASASSEQKEIAKLNA 259
T+L ++ Q N ++ K + N++ V + + K+ A+ A
Sbjct: 165 RDYKTILQEIIQGNNGKISYKLVGESGPDHNKEFEMQVKCGQDTIGIGKGKNKKEAEKEA 224
Query: 260 AREALEKLAQ 269
AR+AL K+ +
Sbjct: 225 ARDALVKMGE 234
>gi|395238267|ref|ZP_10416204.1| Ribonuclease III [Lactobacillus gigeriorum CRBIP 24.85]
gi|394477839|emb|CCI86181.1| Ribonuclease III [Lactobacillus gigeriorum CRBIP 24.85]
Length = 227
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 26/178 (14%)
Query: 47 FKNKRLLEEALTHSSYTD-----STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSL 101
FKN LLEEA THSSY + + Y++LEF+GDA L LA+S+Y++ YP L+ G+L+
Sbjct: 18 FKNIELLEEAFTHSSYANEHPDQARDYEKLEFLGDAVLELAISDYLYRHYPNLNEGELTR 77
Query: 102 LRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKV 161
+R+ + TE + A++ GF + K +E A GS +
Sbjct: 78 MRSNIVRTEGFSEFAIECGFQNEINLG------KGEEKA-------------GSRSRKTL 118
Query: 162 LADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNG 219
L D+ E+ A+++D L+ + + P++ E T L +L Q+NG
Sbjct: 119 LEDVFEAFNGALFLDQ--GLKAVQHFLHLTVYPLIDSGEFDDSRDYKTDLQELLQQNG 174
>gi|409080003|gb|EKM80364.1| hypothetical protein AGABI1DRAFT_128037 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1365
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 15/178 (8%)
Query: 28 PSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYV 87
P P + + ++E I + F+ LL LT +S + +QRLEF+GDA L + Y+
Sbjct: 1177 PEPSV---MHFIETITGFRFQQPSLLRLTLTQNS-MEMKDHQRLEFLGDAVLDFLVVRYL 1232
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR-----------HSAAALDDKV 136
+ PG+LS++++ +S LA + V G ++FV + A +
Sbjct: 1233 YDKDEHASPGELSVMKSLMVSNSILAAICVWSGLHRFVHVRQQQKQVVWDYEKALRGREA 1292
Query: 137 KEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194
E + + + + PKVL+D++ESI A Y+ DF + +IF +L P
Sbjct: 1293 AETSSTSKEAARVTYFWMDLDVPKVLSDVIESIIGAAYISDDFSQAGVEVIFDKMLLP 1350
>gi|212639596|ref|YP_002316116.1| ribonuclease III [Anoxybacillus flavithermus WK1]
gi|226735364|sp|B7GGE9.1|RNC_ANOFW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|212561076|gb|ACJ34131.1| DsRNA-specific ribonuclease [Anoxybacillus flavithermus WK1]
Length = 238
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 43/240 (17%)
Query: 47 FKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
F+N++LL +A THSSY + +RLEF+GDA L L +S Y+F +PQ+ G+L+
Sbjct: 21 FRNEKLLIQAFTHSSYVNEHRKRLHEDNERLEFLGDAVLELTVSQYLFEQFPQMSEGELT 80
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
+RAA + L A H+ + F + V + GG ++ P
Sbjct: 81 KMRAAIVCEPSLVTFA----------HALS--------FGDLVLLGKGEELTGGRMR-PS 121
Query: 161 VLADIVESIAAAIYVD--IDFDLQKLW-MIFRGLLEPIVT--------LEELQQQPQPVT 209
+LAD+ E+ A+Y+D I+ +Q L IF + E + L+E Q+
Sbjct: 122 LLADVFEAFIGALYLDQGIEAVVQFLGKTIFPKIREGAFSHVMDYKSQLQEFVQRDGSGV 181
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
L +K+ Q+ G N++ ++ V ++G + K+ A+ AA+ AL KL Q
Sbjct: 182 LEYKILQERGPA-------HNKEFVSRVSLNGEELGVGVGRSKKEAEQRAAQMALAKLKQ 234
>gi|433448711|ref|ZP_20411577.1| ribonuclease III [Weissella ceti NC36]
gi|429539638|gb|ELA07674.1| ribonuclease III [Weissella ceti NC36]
Length = 234
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 113/240 (47%), Gaps = 42/240 (17%)
Query: 47 FKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
F N+ LLEEA T ++Y + YQRLEF+GDA + + + Y+F YP+ D G+L+
Sbjct: 17 FDNESLLEEAFTQANYINEHPDYVGNDYQRLEFLGDAVMQQSTAVYLFKRYPEWDEGRLT 76
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
LR + + T A ++ + ++VR E +S G+ K
Sbjct: 77 ELRISMVQTRSFAILSRELHLDEYVRLGR----------GEELS---------GARKRDS 117
Query: 161 VLADIVESIAAAIYVD------IDFDLQKLW-MIFRGLLEPIV----TLEELQQQPQPVT 209
+L DI E+ A+Y+D +DF Q ++ I G E V L+EL QQ VT
Sbjct: 118 LLEDIWEAFIGALYLDQGSDTVMDFLEQIMFKKIDEGFYEQFVDYKSKLQELLQQKGAVT 177
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
+ K K + + N+ +V +DG + + + A+ +AAR+A ++L+Q
Sbjct: 178 I------KYAKIAEERIENNNQLFTVAVTLDGQQLGTGQGTSTKAAEKDAARQAYQRLSQ 231
>gi|169830829|ref|YP_001716811.1| ribonuclease III [Candidatus Desulforudis audaxviator MP104C]
gi|169637673|gb|ACA59179.1| Ribonuclease III [Candidatus Desulforudis audaxviator MP104C]
Length = 235
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 109/240 (45%), Gaps = 46/240 (19%)
Query: 43 INYNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
I +++ LL EALTHSS++ QRLEF+GDA L + +S +++ P G
Sbjct: 14 IGLFWRDPDLLLEALTHSSFSYEHPGHRHNQRLEFLGDAVLEIVVSEHLYRRLPDAPEGD 73
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
L+ +RAA + LA VA + ++R E +S G +
Sbjct: 74 LTKIRAAVVCEPALAHVAREMNLGTYLRMGR----------GEELS---------GGRER 114
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT--------------LEELQQQ 204
P VLAD +E++ A+Y+D ++ + W + LEPI++ L+EL Q+
Sbjct: 115 PSVLADALEALLGALYLDQGLEVAR-WFALQS-LEPIISATLAGKGEADYKTRLQELLQK 172
Query: 205 PQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 264
P L + + ++ G N+ A V G + + K+ A+ +AAREAL
Sbjct: 173 RSPEPLRYVIIKEEGPD-------HNKLFTAGVVYRGKVLGRGTGRTKKEAEQHAAREAL 225
>gi|158706454|sp|Q0CW42.2|DCL1_ASPTN RecName: Full=Dicer-like protein 1; Includes: RecName:
Full=Endoribonuclease dcl1; Includes: RecName:
Full=ATP-dependent helicase dcl1
Length = 1519
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 124/250 (49%), Gaps = 21/250 (8%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQL 94
VE + Y+F+ RLL A TH SY + + YQ LEF+GDA L + +F +P
Sbjct: 1238 VEEKLGYHFRYPRLLHSAFTHPSYPSAWARVPCYQSLEFLGDALLDMVCVEDLFRRFPDR 1297
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF---AEAVSQEDNTAV 151
DP L+ + A +S + L +AVK G + + + ++AL ++ + A+A + + + AV
Sbjct: 1298 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHLSYFSSALQSQITHYAEEAQAAASQSDVAV 1357
Query: 152 --YGGSIKAPKV-LADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQP 205
+ + PKV L D+VE+ A++VD +F +++ + F+ ++P + + +
Sbjct: 1358 DYWTLTQDPPKVCLPDMVEAYLGAVFVDSNFRFEEVEVFFQQHIKPYFHDMAIYDTFANR 1417
Query: 206 QPVTLLF-KLCQKNG------KQVDIKHWRKNRKNI-ASVYVDGSFVASASSEQKEIAKL 257
P T L KL + G K +I + + A+V V + + + + AK+
Sbjct: 1418 HPTTFLHNKLTNEYGCLNYCLKAGEIPGADGDASTVLAAVIVHDTILTTGVASSGRYAKV 1477
Query: 258 NAAREALEKL 267
A+ AL +L
Sbjct: 1478 KASENALTEL 1487
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F +P + + R I L AVK Y+F+R
Sbjct: 1070 NYERLEFLGDCFLKMATSISLFNQHPDDNEFDYHVNRMCLICNRNLFNSAVKKELYQFIR 1129
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIK---APKVLADIVESIAAA 172
+ D E + D++ G K A K +AD+ E++ A
Sbjct: 1130 SRGFSRDTWYPEGLTLLQGRDHSKKIGSESKHALAEKTIADVCEALIGA 1178
>gi|406949445|gb|EKD79928.1| Ribonuclease III [uncultured bacterium]
Length = 231
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 109/251 (43%), Gaps = 55/251 (21%)
Query: 43 INYNFKNKRLLEEALTHSSYTDST-----SYQRLEFIGDAALGLALSNYVFLAYPQLDPG 97
+N KN+ L+ A H SY + + S +RLE++GDA L L +S Y+F +YP G
Sbjct: 13 LNLTPKNEHLIHNAFVHRSYLNESKDFEESNERLEYLGDAVLELIVSQYLFESYPDFQEG 72
Query: 98 QLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157
L+ LRAA + TE LA VA + GF + S EA N +
Sbjct: 73 MLTNLRAALVRTESLALVATELGFPPLLLMSKG---------EEATGGRQNIS------- 116
Query: 158 APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQK 217
+LAD E+ A+Y+D +GL+ P + E+ PQ T+L K
Sbjct: 117 ---ILADTFEAFLGALYLD------------QGLV-PCQQILEVHLLPQTKTILKTQAYK 160
Query: 218 NGKQV--DIKHWR----------------KNRKNIASVYVDGSFVASASSEQKEIAKLNA 259
+ K + +I R ++ + V +DG A + K+ A+ +A
Sbjct: 161 DNKSLLQEIAQARYKATPLYSLLTESGPDHDKNFVMQVTIDGKNYAEGQGKSKQAAQEDA 220
Query: 260 AREALEKLAQS 270
A LE++ +S
Sbjct: 221 AYHTLEQITKS 231
>gi|456012685|gb|EMF46373.1| Ribonuclease III [Planococcus halocryophilus Or1]
Length = 251
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 96/194 (49%), Gaps = 36/194 (18%)
Query: 43 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+N F LL +A THSSY + T +RLEF+GDA L L++S+Y+++ YP++
Sbjct: 30 LNITFNKPTLLYQAFTHSSYVNEHRRKQFTDNERLEFLGDAVLELSVSHYLYMKYPEMSE 89
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRAA + L A + GF K++ L K +E GG
Sbjct: 90 GELTKLRAAIVCEPSLVLFANELGFGKYI------LLGKGEELT------------GGRT 131
Query: 157 KAPKVLADIVESIAAAIYVDIDFD--LQKLWMI---------FRGLLEPIVTLEELQQQP 205
+ P +LAD+ ES A+Y+D + + L M+ F +++ L+EL QQ
Sbjct: 132 R-PALLADVFESYIGALYLDQGLEPVVAFLEMVLFPKVDIGAFSHVMDYKSQLQELVQQK 190
Query: 206 QPVTLLFKLCQKNG 219
TL +++ + G
Sbjct: 191 NTGTLSYEIIDEIG 204
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTD-GVLFITGDEKSRVKDAE 352
K +L EL +K SY+I + GP+H + F++ V +A + GV G+ +S+ K+AE
Sbjct: 180 KSQLQELVQQKNTGTLSYEIIDEIGPAHSRLFVTRVSLADRELGV----GNGRSK-KEAE 234
Query: 353 NSAASMMLRALRES 366
AA + +R L+E+
Sbjct: 235 QQAAQLAIRKLQEA 248
>gi|332284936|ref|YP_004416847.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7]
gi|330428889|gb|AEC20223.1| hypothetical protein PT7_1683 [Pusillimonas sp. T7-7]
Length = 252
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 20/138 (14%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
++Y F + LLE+ALTH S++ + +RLEF+GD+ L +++ +F+ +P++D G LS L
Sbjct: 11 LDYQFGDASLLEQALTHRSHSGPHN-ERLEFLGDSVLNFVVASLLFVRFPKIDEGDLSRL 69
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
RA + LA +A + +++R L G + P +L
Sbjct: 70 RANLVKQAALADIAGRLNLSQYLRLGEGELKS-------------------GGFRRPSIL 110
Query: 163 ADIVESIAAAIYVDIDFD 180
AD +E++ AA+Y+D FD
Sbjct: 111 ADALEALFAAVYLDGGFD 128
>gi|307448395|pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer
Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
From Campylobacter Jejuni
gi|307448397|pdb|3O2R|C Chain C, Structural Flexibility In Region Involved In Dimer
Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
From Campylobacter Jejuni
Length = 170
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 77/145 (53%), Gaps = 19/145 (13%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G
Sbjct: 31 LEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 90
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ S V++E+N G +
Sbjct: 91 LSKLRAALVNEKSFAKIANSLNLGDFILMS--------------VAEENN-----GGKEK 131
Query: 159 PKVLADIVESIAAAIYVDIDFDLQK 183
P +L+D +E+I AI+++ F+ K
Sbjct: 132 PSILSDALEAIIGAIHLEAGFEFAK 156
>gi|160946001|ref|ZP_02093227.1| hypothetical protein FAEPRAM212_03534 [Faecalibacterium prausnitzii
M21/2]
gi|158443732|gb|EDP20737.1| ribonuclease III [Faecalibacterium prausnitzii M21/2]
gi|295103252|emb|CBL00796.1| RNAse III [Faecalibacterium prausnitzii SL3/3]
Length = 224
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 118/247 (47%), Gaps = 49/247 (19%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSY-----QRLEFIGDAALGLALSNYVFLAYPQ 93
+E II Y FKN LLE ALTH+SY + + +RLEF+GD+ L + ++Y+F AY
Sbjct: 5 LETIIGYKFKNPELLEIALTHTSYANESRTPVKHNERLEFLGDSVLQIVSADYLFHAYAD 64
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
G L+ +RA+ +S L ++F A + + E+ E+ G
Sbjct: 65 RPEGDLTRIRASLVSESAL---------FQF------AQEIDLGEYLRLGRGEERC---G 106
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT------------LEEL 201
G + P V++D E++ AA+Y+D ++ + +++ P +T L+E+
Sbjct: 107 GRTR-PSVVSDAFEAVIAALYLDGGMEVARKFIL------PFITEGKHAEADYKTRLQEI 159
Query: 202 QQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
QQ L + + ++G D KH+ + +V + VA K+ A+ AA+
Sbjct: 160 VQQNPEERLSYVVESESGPDHD-KHF------VVAVRFNSDRVARGEGRSKKAAEQCAAK 212
Query: 262 EALEKLA 268
EAL+ L
Sbjct: 213 EALKLLG 219
>gi|157150981|ref|YP_001450082.1| ribonuclease III [Streptococcus gordonii str. Challis substr. CH1]
gi|189043362|sp|A8AWC2.1|RNC_STRGC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
Short=RNase III
gi|157075775|gb|ABV10458.1| Ribonuclease III (RNase III) [Streptococcus gordonii str. Challis
substr. CH1]
Length = 232
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 108/232 (46%), Gaps = 33/232 (14%)
Query: 47 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
FK+ LLE A TH+SY + + +RLEF+GDA L L +S Y+F YP+ G L+
Sbjct: 16 FKDVSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIISEYLFEKYPKRPEGDLT 75
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
LR+ + E LA + F +F++ E+ + G +
Sbjct: 76 KLRSTIVREESLAGFSRDCQFDRFIKLGKG---------------EEKS----GGRERET 116
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGK 220
+L D+ E+ A+ +D ++ K + I++ ++ P V + +Q T L +L Q NG
Sbjct: 117 ILGDLFEAFLGALLLDKGLEVVKNF-IYQVMI-PKVEAGDFEQVTDYKTKLQELLQSNGD 174
Query: 221 -----QVDIKHWRKNRKNI-ASVYVDGSFVASASSEQKEIAKLNAAREALEK 266
QV + + KN SV VDG V K++A+ AA+ A EK
Sbjct: 175 VEILYQVVSESGPAHAKNFEVSVSVDGRLVGKGQGRSKKLAEQEAAKNAFEK 226
>gi|46132992|ref|XP_389201.1| hypothetical protein FG09025.1 [Gibberella zeae PH-1]
Length = 1495
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 20/210 (9%)
Query: 28 PSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS---YQRLEFIGDAALGLALS 84
P+ V V + Y+FK+ LL+ A TH SY S + YQRLEF+GDA + + +
Sbjct: 1188 PNANQRRLVQKVADATGYHFKSAPLLQSAFTHPSYAYSGNVPNYQRLEFLGDALIDMTIV 1247
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF----- 139
Y++ +P DP L+ + A S + L + VK + + + + K++++
Sbjct: 1248 EYLYRNFPLADPQWLTEHKMAMASNQFLGCLCVKLNLHHHLLFNTSQFISKIRDYVAELE 1307
Query: 140 -----AEAVSQEDNTAV----YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRG 190
A ++ED T + + + PK AD +E++ A++VD +FD + F
Sbjct: 1308 LAEETARQEAEEDGTPMRMDFWLNATTPPKAYADSIEALMGAMFVDSEFDYSVVEDFFTK 1367
Query: 191 LLEPI---VTLEELQQQPQPVTLLFKLCQK 217
+ P ++L + P T L K Q+
Sbjct: 1368 FIFPYFKDMSLYDTFANKHPYTFLTKKMQQ 1397
>gi|305432452|ref|ZP_07401614.1| ribonuclease III [Campylobacter coli JV20]
gi|304444491|gb|EFM37142.1| ribonuclease III [Campylobacter coli JV20]
Length = 225
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 90/194 (46%), Gaps = 44/194 (22%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ + +RLEF+GDA L L + Y+F + + G
Sbjct: 8 LEQKLAYKFKDKDLLIHALTHKSFKKPYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 67
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ SAA +E+N G +
Sbjct: 68 LSKLRAALVNEKSFAKIANSLNLGDFIFMSAA--------------EENN-----GGKEK 108
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ FD + + KL +KN
Sbjct: 109 PSILSDALEAIMGAIHLEAGFDFAR-------------------------NIALKLIEKN 143
Query: 219 GKQVDIKHWRKNRK 232
Q+D K+ K+ K
Sbjct: 144 FPQIDAKNLIKDYK 157
>gi|283953747|ref|ZP_06371278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414]
gi|283794788|gb|EFC33526.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 414]
Length = 224
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 121/246 (49%), Gaps = 46/246 (18%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G
Sbjct: 7 LEQNLTYEFKDKNLLMHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ S V++E+N GG K+
Sbjct: 67 LSKLRAALVNEKSFAKIANSLNLGDFIFMS--------------VAEENN----GGKEKS 108
Query: 159 PKVLADIVESIAAAIYVDIDFDLQK---LWMIFRG--------LLEPIVT-LEELQQQPQ 206
+L+D +E+I AI+++ F+ K L +I + L++ T L+E+ Q
Sbjct: 109 S-ILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKI 167
Query: 207 PVTLLFKLCQKNG----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262
T ++ + G KQ +I ++ +DG +A A + K+ A+ AA+
Sbjct: 168 GQTPQYETVRAFGPDHLKQFEI-----------ALMLDGKEIARAIAGSKKEAQQMAAKI 216
Query: 263 ALEKLA 268
ALEKL
Sbjct: 217 ALEKLG 222
>gi|419585204|ref|ZP_14121265.1| ribonuclease III [Campylobacter coli 202/04]
gi|380562621|gb|EIA85477.1| ribonuclease III [Campylobacter coli 202/04]
Length = 224
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 90/194 (46%), Gaps = 44/194 (22%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ + +RLEF+GDA L L + Y+F + + G
Sbjct: 7 LEQKLAYKFKDKDLLIHALTHKSFKKPYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ SAA +E+N G +
Sbjct: 67 LSKLRAALVNEKSFAKIANSLNLGDFIFMSAA--------------EENN-----GGKEK 107
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ FD + + KL +KN
Sbjct: 108 PSILSDALEAIMGAIHLEAGFDFAR-------------------------NIALKLIEKN 142
Query: 219 GKQVDIKHWRKNRK 232
Q+D K+ K+ K
Sbjct: 143 FPQIDAKNLIKDYK 156
>gi|269215480|ref|ZP_06159334.1| ribonuclease III [Slackia exigua ATCC 700122]
gi|269130967|gb|EEZ62042.1| ribonuclease III [Slackia exigua ATCC 700122]
Length = 312
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 30/246 (12%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALS 84
+PE + +++I F + +L A+TH S T+ SY+RLEF+GD+ LG ++
Sbjct: 4 TPEQSAKLDLAQHVIGVAFDDIDILLAAITHPSATEGKPVKFSYERLEFLGDSILGAIVA 63
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS 144
N F AYP++D G L+ ++ A +S L+ VA K GF + S
Sbjct: 64 NEAFHAYPEIDEGGLTRIKVALVSGSSLSDVAAKLGFADIIVFG---------------S 108
Query: 145 QEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQ 204
E T G L ++ E++ AA+++D D + ++ R L P + +E ++
Sbjct: 109 SERGTGRRG----LHSALENVYEALVAALFLDKGMDGARDFV--RRTLIPRMDIEMAREP 162
Query: 205 PQPVTLLFKLCQKNG-----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNA 259
P + L + Q+ G K V+ + +R ++ V+ + +A K+ ++ A
Sbjct: 163 ENPKSALQEKLQEEGITPTYKLVETQGPPHDRTFVSQVFAGLTALAQGIGRTKKESESQA 222
Query: 260 AREALE 265
A+ AL+
Sbjct: 223 AKAALD 228
>gi|89098685|ref|ZP_01171567.1| Rnc [Bacillus sp. NRRL B-14911]
gi|89086647|gb|EAR65766.1| Rnc [Bacillus sp. NRRL B-14911]
Length = 259
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 117/242 (48%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYPQLDP 96
I +F+N++LL++A THSSY + +RLEF+GDA L L +S +++ YP +
Sbjct: 27 IGISFENEKLLKQAFTHSSYVNEHRRKPYEDNERLEFLGDAVLELTVSQFLYKKYPMMSE 86
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ LRAA + L A + F K V L K +E G
Sbjct: 87 GELTKLRAAVVCEPSLVTFANELEFGKLV------LLGKGEEMT-------------GGR 127
Query: 157 KAPKVLADIVESIAAAIYVD------IDFDLQKLW-----MIFRGLLEPIVTLEELQQQP 205
+ P +LAD+ E+ A+Y++ I F Q ++ F +++ L+EL Q+
Sbjct: 128 ERPALLADVFEAFIGALYLEKGIDTVIGFLEQTVFPKINSGAFSHVMDFKSQLQELVQRD 187
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+ +K+ Q+ G +R+ ++ V + G+ + + + K+ A+ +AA+ ALE
Sbjct: 188 GAGAIEYKILQEKGPA-------HSREFVSRVSLSGNELGTGTGRSKKEAEQHAAQMALE 240
Query: 266 KL 267
L
Sbjct: 241 IL 242
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K +L EL + YKI +++GP+H ++F+S V ++ + TG +S+ K+AE
Sbjct: 177 KSQLQELVQRDGAGAIEYKILQEKGPAHSREFVSRVSLSGNE---LGTGTGRSK-KEAEQ 232
Query: 354 SAASMMLRALR 364
AA M L L+
Sbjct: 233 HAAQMALEILK 243
>gi|296133569|ref|YP_003640816.1| ribonuclease III [Thermincola potens JR]
gi|296032147|gb|ADG82915.1| ribonuclease III [Thermincola potens JR]
Length = 245
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 114/271 (42%), Gaps = 51/271 (18%)
Query: 23 MLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSY------QRLEFIGD 76
M + P++++ + ++ ++ + LL ALTHSSY QRLEF+GD
Sbjct: 1 MKLGILGPKIDELI----GVMGIDWTSPELLVTALTHSSYAHENKREPIEHNQRLEFLGD 56
Query: 77 AALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKV 136
A L L +S Y++ +P G L+ +RA + LA VA +++ L K
Sbjct: 57 AVLELVISEYLYDRFPTYPEGVLTKMRAGIVCESSLASVARAMNLGQYI------LMGKG 110
Query: 137 KEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI- 195
+E + G P +LAD +E+I A+Y+D + KL++I L E I
Sbjct: 111 EERS-------------GGRNRPSILADAMEAIFGAVYLDQGLETTKLFII-NTLSEQIS 156
Query: 196 -------------VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGS 242
L+EL QQ TL + + + G N+ A VY G
Sbjct: 157 KVVAKGGQTGDYKTELQELVQQKADNTLTYAIIGEEGPD-------HNKVFTAGVYCHGK 209
Query: 243 FVASASSEQKEIAKLNAAREALEKLAQSMPV 273
K+ A+ AA +ALEK+ V
Sbjct: 210 IWGVGKGRTKKEAEQAAAHDALEKIKNGYNV 240
>gi|86152331|ref|ZP_01070542.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94]
gi|315125039|ref|YP_004067043.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
gi|85840820|gb|EAQ58071.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94]
gi|315018761|gb|ADT66854.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
Length = 224
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 114/260 (43%), Gaps = 74/260 (28%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ S + +RLEF+GDA L L + Y+F + + G
Sbjct: 7 LERSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ S V++++N G +
Sbjct: 67 LSKLRAALVNEKSFAKIANSLNLGDFIFMS--------------VAEKNN-----GGKEK 107
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ F+ K T+ +L +KN
Sbjct: 108 PSILSDALEAIIGAIHLEAGFEFAK-------------------------TIALRLIEKN 142
Query: 219 GKQVD----IKHWRKNRKNIA--------------------------SVYVDGSFVASAS 248
Q+D IK ++ + I ++ +DG +A A
Sbjct: 143 FPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAI 202
Query: 249 SEQKEIAKLNAAREALEKLA 268
+ K+ A+ AA+ ALEKL
Sbjct: 203 AGSKKEAQQMAAKIALEKLG 222
>gi|57168805|ref|ZP_00367936.1| ribonuclease III Cj1635c [Campylobacter coli RM2228]
gi|419537870|ref|ZP_14077235.1| ribonuclease III [Campylobacter coli 90-3]
gi|419540283|ref|ZP_14079521.1| ribonuclease III [Campylobacter coli Z163]
gi|419544520|ref|ZP_14083476.1| ribonuclease III [Campylobacter coli 2553]
gi|419546878|ref|ZP_14085623.1| ribonuclease III [Campylobacter coli 2680]
gi|419549476|ref|ZP_14088066.1| ribonuclease III [Campylobacter coli 2685]
gi|419553184|ref|ZP_14091447.1| ribonuclease III [Campylobacter coli 2692]
gi|419555536|ref|ZP_14093549.1| ribonuclease III [Campylobacter coli 84-2]
gi|419557967|ref|ZP_14095857.1| ribonuclease III [Campylobacter coli 80352]
gi|419560500|ref|ZP_14098141.1| ribonuclease III [Campylobacter coli 86119]
gi|419562240|ref|ZP_14099759.1| ribonuclease III [Campylobacter coli 1091]
gi|419565239|ref|ZP_14102588.1| ribonuclease III [Campylobacter coli 1098]
gi|419566594|ref|ZP_14103848.1| ribonuclease III [Campylobacter coli 1148]
gi|419569978|ref|ZP_14107033.1| ribonuclease III [Campylobacter coli 7--1]
gi|419571931|ref|ZP_14108869.1| ribonuclease III [Campylobacter coli 132-6]
gi|419574263|ref|ZP_14111024.1| ribonuclease III [Campylobacter coli 1891]
gi|419575098|ref|ZP_14111795.1| ribonuclease III [Campylobacter coli 1909]
gi|419577226|ref|ZP_14113783.1| ribonuclease III [Campylobacter coli 59-2]
gi|419579706|ref|ZP_14116108.1| ribonuclease III [Campylobacter coli 1948]
gi|419581745|ref|ZP_14118035.1| ribonuclease III [Campylobacter coli 1957]
gi|419591030|ref|ZP_14126389.1| ribonuclease III [Campylobacter coli 37/05]
gi|419592712|ref|ZP_14127956.1| ribonuclease III [Campylobacter coli LMG 9854]
gi|419595070|ref|ZP_14130184.1| ribonuclease III [Campylobacter coli LMG 23336]
gi|419596512|ref|ZP_14131515.1| ribonuclease III [Campylobacter coli LMG 23341]
gi|419599217|ref|ZP_14134083.1| ribonuclease III [Campylobacter coli LMG 23342]
gi|419600989|ref|ZP_14135725.1| ribonuclease III [Campylobacter coli LMG 23344]
gi|419602764|ref|ZP_14137338.1| ribonuclease III [Campylobacter coli 151-9]
gi|419604007|ref|ZP_14138482.1| ribonuclease III [Campylobacter coli LMG 9853]
gi|419606995|ref|ZP_14141345.1| ribonuclease III [Campylobacter coli LMG 9860]
gi|419608702|ref|ZP_14142887.1| ribonuclease III [Campylobacter coli H6]
gi|419611039|ref|ZP_14145088.1| ribonuclease III [Campylobacter coli H8]
gi|419612541|ref|ZP_14146417.1| ribonuclease III [Campylobacter coli H9]
gi|419614811|ref|ZP_14148580.1| ribonuclease III [Campylobacter coli H56]
gi|419617063|ref|ZP_14150694.1| ribonuclease III [Campylobacter coli Z156]
gi|57019852|gb|EAL56535.1| ribonuclease III Cj1635c [Campylobacter coli RM2228]
gi|380517237|gb|EIA43356.1| ribonuclease III [Campylobacter coli Z163]
gi|380519417|gb|EIA45495.1| ribonuclease III [Campylobacter coli 90-3]
gi|380521629|gb|EIA47349.1| ribonuclease III [Campylobacter coli 2680]
gi|380525099|gb|EIA50654.1| ribonuclease III [Campylobacter coli 2553]
gi|380525687|gb|EIA51192.1| ribonuclease III [Campylobacter coli 2685]
gi|380529448|gb|EIA54604.1| ribonuclease III [Campylobacter coli 2692]
gi|380535994|gb|EIA60660.1| ribonuclease III [Campylobacter coli 84-2]
gi|380536990|gb|EIA61575.1| ribonuclease III [Campylobacter coli 86119]
gi|380540084|gb|EIA64409.1| ribonuclease III [Campylobacter coli 1098]
gi|380540610|gb|EIA64910.1| ribonuclease III [Campylobacter coli 80352]
gi|380541447|gb|EIA65709.1| ribonuclease III [Campylobacter coli 1091]
gi|380545945|gb|EIA69908.1| ribonuclease III [Campylobacter coli 1148]
gi|380548527|gb|EIA72429.1| ribonuclease III [Campylobacter coli 7--1]
gi|380549901|gb|EIA73629.1| ribonuclease III [Campylobacter coli 1891]
gi|380552684|gb|EIA76239.1| ribonuclease III [Campylobacter coli 132-6]
gi|380554296|gb|EIA77773.1| ribonuclease III [Campylobacter coli 1909]
gi|380556681|gb|EIA79925.1| ribonuclease III [Campylobacter coli 1948]
gi|380557699|gb|EIA80902.1| ribonuclease III [Campylobacter coli 59-2]
gi|380558478|gb|EIA81656.1| ribonuclease III [Campylobacter coli 1957]
gi|380569220|gb|EIA91667.1| ribonuclease III [Campylobacter coli 37/05]
gi|380571779|gb|EIA94137.1| ribonuclease III [Campylobacter coli LMG 9854]
gi|380574438|gb|EIA96541.1| ribonuclease III [Campylobacter coli LMG 23336]
gi|380575832|gb|EIA97900.1| ribonuclease III [Campylobacter coli LMG 23342]
gi|380575953|gb|EIA98015.1| ribonuclease III [Campylobacter coli LMG 23341]
gi|380580494|gb|EIB02242.1| ribonuclease III [Campylobacter coli 151-9]
gi|380580987|gb|EIB02719.1| ribonuclease III [Campylobacter coli LMG 9853]
gi|380582338|gb|EIB04002.1| ribonuclease III [Campylobacter coli LMG 23344]
gi|380585061|gb|EIB06434.1| ribonuclease III [Campylobacter coli H6]
gi|380586154|gb|EIB07466.1| ribonuclease III [Campylobacter coli LMG 9860]
gi|380588981|gb|EIB10066.1| ribonuclease III [Campylobacter coli H8]
gi|380590213|gb|EIB11238.1| ribonuclease III [Campylobacter coli H9]
gi|380592232|gb|EIB13144.1| ribonuclease III [Campylobacter coli H56]
gi|380594164|gb|EIB14970.1| ribonuclease III [Campylobacter coli Z156]
Length = 224
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 90/194 (46%), Gaps = 44/194 (22%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ + +RLEF+GDA L L + Y+F + + G
Sbjct: 7 LEQKLAYKFKDKDLLIHALTHKSFKKPYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ SAA +E+N G +
Sbjct: 67 LSKLRAALVNEKSFAKIANSLNLGDFIFMSAA--------------EENN-----GGKEK 107
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ FD + + KL +KN
Sbjct: 108 PSILSDALEAIMGAIHLEAGFDFAR-------------------------NIALKLIEKN 142
Query: 219 GKQVDIKHWRKNRK 232
Q+D K+ K+ K
Sbjct: 143 FPQIDAKNLIKDYK 156
>gi|392541348|ref|ZP_10288485.1| RNase III, ds RNA [Pseudoalteromonas piscicida JCM 20779]
gi|409202181|ref|ZP_11230384.1| RNase III, ds RNA [Pseudoalteromonas flavipulchra JG1]
Length = 225
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 31/235 (13%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
N I YNF +K LLE+ALTH S+ + +RLEF+GD+ L ++N ++ +P+ G LS
Sbjct: 10 NKIGYNFSDKALLEQALTHRSHKGQHN-ERLEFLGDSILSFVIANALYHKFPKAREGDLS 68
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
+R+ + + LA V+ ++R L G +
Sbjct: 69 RMRSTLVRGQTLAEFGVEFALGDYLRLGPGELKS-------------------GGFRRES 109
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNG- 219
LAD VE+I A+++D D D+ + ++ + + Q P TLL + Q
Sbjct: 110 TLADAVEAIIGAVFLDSDIDVCR-DLVLSWYESRLTAISPGHNQKDPKTLLQEYLQARKL 168
Query: 220 -----KQVDIKHWRKNRKNIASVYVDG--SFVASASSEQKEIAKLNAAREALEKL 267
+D K N+ V+G S ++ SS +K A+ AA +AL+ L
Sbjct: 169 PLPGYTVIDTKGQAHNQTFTVECIVEGMESIISVGSSRRK--AEQKAAEKALKIL 221
>gi|419550405|ref|ZP_14088911.1| ribonuclease III [Campylobacter coli 2688]
gi|419553745|ref|ZP_14091902.1| ribonuclease III [Campylobacter coli 2698]
gi|380530677|gb|EIA55739.1| ribonuclease III [Campylobacter coli 2688]
gi|380533733|gb|EIA58640.1| ribonuclease III [Campylobacter coli 2698]
Length = 224
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 90/194 (46%), Gaps = 44/194 (22%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ + +RLEF+GDA L L + Y+F + + G
Sbjct: 7 LEQKLAYKFKDKDLLIHALTHKSFKKPYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ SAA +E+N G +
Sbjct: 67 LSKLRAALVNEKSFAKIANSVNLGDFIFMSAA--------------EENN-----GGKEK 107
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ FD + + KL +KN
Sbjct: 108 PSILSDALEAIMGAIHLEAGFDFAR-------------------------NIALKLIEKN 142
Query: 219 GKQVDIKHWRKNRK 232
Q+D K+ K+ K
Sbjct: 143 FPQIDAKNLIKDYK 156
>gi|319789592|ref|YP_004151225.1| ribonuclease III [Thermovibrio ammonificans HB-1]
gi|317114094|gb|ADU96584.1| ribonuclease III [Thermovibrio ammonificans HB-1]
Length = 236
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 117/256 (45%), Gaps = 52/256 (20%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAALGLALSNYVFL 89
D + +E ++ Y+FK+K LL+ AL H S+ +Y+ LEF+GDA +GL +S +
Sbjct: 5 DKLVALERLLGYSFKDKELLKRALIHRSFAFEKDTGENYEVLEFLGDAVIGLIVSEELIK 64
Query: 90 AYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNT 149
+P+ G+LS +RA +S L+++A +F+ E T
Sbjct: 65 RFPEKSEGELSQIRAFLVSEPSLSKLARTINLGQFLYLGKG---------------EKRT 109
Query: 150 AVYGGSIKAPKVLADIVESIAAAIYVDIDFD----------LQKLWMIFRGLLEPIVT-- 197
G + +L D+ ES+ A+Y+D F+ L+KLW I LE VT
Sbjct: 110 ----GGREKDSILCDVFESVFGALYLDAGFEKAKEIFKNKFLKKLWEI----LENAVTYK 161
Query: 198 -----LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQK 252
L+E+ Q+ V +++ + G + D + + N + Y G + K
Sbjct: 162 DFKSYLQEITQREYKVLPKYRVVKAEGPEHDKTFTVECQVNDITTYGKG--------KSK 213
Query: 253 EIAKLNAAREALEKLA 268
+ A+ +AARE L+ L
Sbjct: 214 KAAEQDAAREMLKALG 229
Score = 37.7 bits (86), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K L E+ ++ P Y++ K EGP HDK F Q+ D + G K K AE
Sbjct: 164 KSYLQEITQREYKVLPKYRVVKAEGPEHDKTFTVECQV--NDITTYGKGKSK---KAAEQ 218
Query: 354 SAASMMLRAL 363
AA ML+AL
Sbjct: 219 DAAREMLKAL 228
>gi|419537205|ref|ZP_14076664.1| ribonuclease III [Campylobacter coli 111-3]
gi|419568861|ref|ZP_14105990.1| ribonuclease III [Campylobacter coli 1417]
gi|419583483|ref|ZP_14119664.1| ribonuclease III [Campylobacter coli 1961]
gi|419587626|ref|ZP_14123539.1| ribonuclease III [Campylobacter coli 67-8]
gi|380515558|gb|EIA41717.1| ribonuclease III [Campylobacter coli 111-3]
gi|380544843|gb|EIA68849.1| ribonuclease III [Campylobacter coli 1417]
gi|380563074|gb|EIA85920.1| ribonuclease III [Campylobacter coli 1961]
gi|380563757|gb|EIA86585.1| ribonuclease III [Campylobacter coli 67-8]
Length = 224
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 90/194 (46%), Gaps = 44/194 (22%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y FK+K LL ALTH S+ + +RLEF+GDA L L + Y+F + + G
Sbjct: 7 LEQKLAYKFKDKDLLIHALTHKSFKKPYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGD 66
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA ++ + A++A F+ SAA +E+N G +
Sbjct: 67 LSKLRAALVNEKSFAKIANSLNLGDFIFMSAA--------------EENN-----GGKEK 107
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218
P +L+D +E+I AI+++ FD + + KL +KN
Sbjct: 108 PSILSDALEAIMGAIHLEAGFDFAR-------------------------NIALKLIEKN 142
Query: 219 GKQVDIKHWRKNRK 232
Q+D K+ K+ K
Sbjct: 143 FPQIDAKNLIKDYK 156
>gi|259046634|ref|ZP_05737035.1| ribonuclease III [Granulicatella adiacens ATCC 49175]
gi|259036799|gb|EEW38054.1| ribonuclease III [Granulicatella adiacens ATCC 49175]
Length = 236
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 113/242 (46%), Gaps = 43/242 (17%)
Query: 46 NFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQL 99
+F N+ LL EA+THSSY + +R+EF+GDA L L +S+++F +P GQL
Sbjct: 18 SFNNEALLMEAMTHSSYANEHKEMKGIYNERIEFLGDAVLELTISDWLFRQFPHFQEGQL 77
Query: 100 SLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAP 159
+ LRA + + L+ +A + +++ E +S G + P
Sbjct: 78 TKLRAQIVCEDSLSLLAKECSLNEYLLLGK----------GETLS---------GGREKP 118
Query: 160 KVLADIVESIAAAIYVDIDFDLQKLWM-------IFRGLLEPI----VTLEELQQQPQPV 208
+L D+ E+ A+Y+D + + ++ I G E I L+E QQ PV
Sbjct: 119 AILCDVFEAFIGALYLDKGVNEVQRFLNLVVIPKIKNGRYELITDFKTELQEYLQQNGPV 178
Query: 209 TLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268
+ ++L ++ G D + + VDG +AS + K+ A+ AA+ +E+L
Sbjct: 179 HIRYELVKEEGPSHD-------KTFTVQLIVDGKKYKTASGKTKKAAEQMAAKLTMEELT 231
Query: 269 QS 270
+S
Sbjct: 232 KS 233
>gi|366089293|ref|ZP_09455766.1| ribonuclease III [Lactobacillus acidipiscis KCTC 13900]
Length = 234
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 98/199 (49%), Gaps = 36/199 (18%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAY 91
++++ +FKN+ LL+EA TH+SY + Y+R+EF+GDA + L +S Y+F Y
Sbjct: 8 HLKDDFGIDFKNQNLLDEAFTHASYVNEHPKENLKFYERIEFLGDAVMQLCVSEYLFKRY 67
Query: 92 PQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV 151
+ G+LS LRAA + + ++ A + F +++R K +E A+A
Sbjct: 68 DTMPEGKLSRLRAAMVCEDSFSKFAKECHFDEYIRLG------KGEEKADAR-------- 113
Query: 152 YGGSIKAPKVLADIVESIAAAIYVD------IDFDLQ----KLWM-IFRGLLEPIVTLEE 200
K P +L DI E+ A+Y+D +DF Q KL M F + L+E
Sbjct: 114 -----KRPSLLCDIFEAFIGALYLDQGKSVVVDFISQVVFPKLDMGWFDHFFDHKTELQE 168
Query: 201 LQQQPQPVTLLFKLCQKNG 219
Q+ ++ +KL + G
Sbjct: 169 YLQKDGECSIEYKLVNQEG 187
>gi|222824476|ref|YP_002576050.1| ribonuclease III [Campylobacter lari RM2100]
gi|222539697|gb|ACM64798.1| ribonuclease III [Campylobacter lari RM2100]
Length = 222
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 19/138 (13%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
+NY+FKN++LL EALTH SY + +RLEF+GDA + L + ++F + + G LS L
Sbjct: 9 LNYHFKNEQLLIEALTHKSYKKPYNNERLEFLGDAVMDLVVGEFLFFKFQKESEGNLSKL 68
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
RAA ++ + A +A K + + S +++E+N P +L
Sbjct: 69 RAALVNEKSFANLAQKLDLGECIFMS--------------IAEENNDGR-----NKPSIL 109
Query: 163 ADIVESIAAAIYVDIDFD 180
+D E++ A+Y++I F+
Sbjct: 110 SDAFEALMGAMYLEIGFE 127
>gi|1389549|dbj|BAA10976.1| ORF3 [Bacillus subtilis]
Length = 266
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 43/242 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDST------SYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
I+ +F+N++LL +A THSSY + +RLEF+GDA L L +S ++F YP +
Sbjct: 27 ISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRFLFPKYPAMSE 86
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LRAA + L +A + F V L K +E G
Sbjct: 87 GDLTKLRAAIVCEPSLVSLAHELSFGDLV------LLGKGEEMT-------------GGR 127
Query: 157 KAPKVLADIVESIAAAIYVDIDFD----LQKLWMI-------FRGLLEPIVTLEELQQQP 205
K P +LAD+ E+ A+Y+D + K+++ F +++ L+E Q+
Sbjct: 128 KRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFPHVMDFKSQLQEYVQRD 187
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+L +K+ + G NR+ A V + G + + K+ A+ +AA+EAL
Sbjct: 188 GKGSLEYKISNEKGPA-------HNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALA 240
Query: 266 KL 267
KL
Sbjct: 241 KL 242
>gi|91775216|ref|YP_544972.1| ribonuclease III [Methylobacillus flagellatus KT]
gi|91775360|ref|YP_545116.1| ribonuclease III [Methylobacillus flagellatus KT]
gi|91709203|gb|ABE49131.1| RNAse III [Methylobacillus flagellatus KT]
gi|91709347|gb|ABE49275.1| RNAse III [Methylobacillus flagellatus KT]
Length = 248
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 20/137 (14%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102
+ Y FK+K LL ALTH SY+ S + +RLEF+GD L +++ +FL +P+L G LS L
Sbjct: 32 LAYEFKDKGLLTLALTHRSYSGSNN-ERLEFLGDGVLNFLVAHQLFLRFPKLPEGDLSRL 90
Query: 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVL 162
RA + + L+ +A + +F+R L G + P VL
Sbjct: 91 RAQLVKEQTLSEIATELSVGEFLRLGEGELKS-------------------GGWRRPSVL 131
Query: 163 ADIVESIAAAIYVDIDF 179
AD +E+I A+++D +
Sbjct: 132 ADAMEAIIGAVFLDGGY 148
>gi|339483365|ref|YP_004695151.1| Ribonuclease 3 [Nitrosomonas sp. Is79A3]
gi|338805510|gb|AEJ01752.1| Ribonuclease 3 [Nitrosomonas sp. Is79A3]
Length = 238
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 23/177 (12%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
N I Y+F ++LL+EALTH S++ + +RLEF+GDA L A++ ++ +P L G LS
Sbjct: 19 NRIGYSFTERKLLQEALTHRSHS-AFHNERLEFLGDAVLNCAIAGLIYKYFPDLPEGHLS 77
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
LRA ++ + L+ +A+ K +R L G + P
Sbjct: 78 RLRANFVNQQALSDMALSLQMDKLIRLGEGELKS-------------------GGCQRPS 118
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV-TLEELQQQPQPVTLLFKLCQ 216
+LAD +E++ AIY+D ++ + + R L P + +++ Q P TLL + Q
Sbjct: 119 ILADALEAVLGAIYLDSNY--ARAEDVIRTLYLPFMQSIDFRTQGKDPKTLLQEFLQ 173
>gi|421862105|ref|ZP_16293932.1| dsRNA-specific ribonuclease [Paenibacillus popilliae ATCC 14706]
gi|410828360|dbj|GAC44369.1| dsRNA-specific ribonuclease [Paenibacillus popilliae ATCC 14706]
Length = 232
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 115/237 (48%), Gaps = 33/237 (13%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYPQLDP 96
+N +F+N++LL++A TH+SY + + +RLEF+GDA L L +S ++F P
Sbjct: 12 LNVHFRNRQLLKQAFTHASYVNEHRFGQHQDNERLEFLGDAVLELTVSEFLFHHCPTRPE 71
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G+L+ +RA+ + L + A + F K+V L K +E GG
Sbjct: 72 GELTKMRASIVCEPSLVKFANQLQFGKYV------LLGKGEELT------------GGRT 113
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
+ P +LAD+ ES A+Y+D L+ + R + P ++L+ Q T L +L Q
Sbjct: 114 R-PALLADVFESFIGALYLDQ--GLEPVREFLRKHIFPQISLDGKLQTNDYKTQLQELTQ 170
Query: 217 KNG------KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+ + V+ + R+ ++ V++ + + K+ A+ AA E+LE L
Sbjct: 171 HHNLGALEYRIVEERGPAHEREFVSEVHMGETCLGRGVGRSKKEAEQQAAAESLEHL 227
>gi|404370911|ref|ZP_10976226.1| ribonuclease 3 [Clostridium sp. 7_2_43FAA]
gi|404301521|gb|EEH98168.2| ribonuclease 3 [Clostridium sp. 7_2_43FAA]
Length = 232
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 111/247 (44%), Gaps = 42/247 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAALGLALSNYVFLAYPQL 94
VE+ I F +LL+ ALTHSSY D +R EF+GD+ L L ++ Y+FL Y
Sbjct: 9 VEDSIGLTFNEPKLLKTALTHSSYANQHKDQEYNERFEFLGDSILQLCITEYLFLNYKNK 68
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
G+L+ +R+ + L + K F+R S + GG
Sbjct: 69 SEGELTKIRSLIVCENSLYEIGKKLNLGYFIRISRGE------------------ELTGG 110
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIVT----------LEELQ 202
+ ++AD VE++ A IY+D + K ++I F+ +++ + L+E
Sbjct: 111 RERVS-IIADAVEALLAGIYLDKGLEFVKDYIIGHFKEIIDKAINNDIVLDYKTKLQEEM 169
Query: 203 QQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262
Q+ V+++++L + G RK SV ++ + K+ ++ NAA+E
Sbjct: 170 QKSGEVSIIYELLKYEGPP-------HRRKFFTSVLIEDRELGKGEGYSKKESEQNAAKE 222
Query: 263 ALEKLAQ 269
AL L +
Sbjct: 223 ALRNLEE 229
>gi|295425203|ref|ZP_06817906.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664]
gi|295064979|gb|EFG55884.1| ribonuclease III [Lactobacillus amylolyticus DSM 11664]
Length = 227
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 27/198 (13%)
Query: 47 FKNKRLLEEALTHSSYTDS-----TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSL 101
F N++LLEEA THSSY + Y++LEF+GDA L LA+S+Y++ YP L+ G+L+
Sbjct: 18 FHNEKLLEEAFTHSSYANEHPEGVRDYEKLEFLGDAVLELAVSDYLYRHYPNLNEGELTR 77
Query: 102 LRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKV 161
+R+ + TE + A++ GF D++ + + + A G+ +
Sbjct: 78 MRSNIVRTEGFSEFAIECGF-----------QDEIN-----LGKGEEKA---GARHRKTL 118
Query: 162 LADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQ 221
L D+ E+ A+Y+D ++ + + P++ E T L +L QK+G
Sbjct: 119 LEDVFEAFNGALYLDQ--GMKAVTHFLHLTVYPLIDKGEFDASRDYKTDLQELLQKDGP- 175
Query: 222 VDIKHWRKNRKNIASVYV 239
V+I++ + + S +V
Sbjct: 176 VNIEYVTLSESQLPSHFV 193
>gi|163814044|ref|ZP_02205436.1| hypothetical protein COPEUT_00197 [Coprococcus eutactus ATCC 27759]
gi|158450493|gb|EDP27488.1| ribonuclease III [Coprococcus eutactus ATCC 27759]
Length = 232
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 29/190 (15%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYP 92
+E I Y FK+ LL ALTH+S+ + + SY+RLEF+GDA L +S Y+FL
Sbjct: 11 LEKKIGYQFKDINLLITALTHTSFANELKVNKTDSYERLEFLGDAILEYIVSEYLFLKKK 70
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ + G+L+ LRA+ + L++++ G+ +VR S E+ T
Sbjct: 71 EYEEGRLTKLRASLVCEFTLSQISESLGYGDYVRLSKG---------------EELT--- 112
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G K +L D+ ES+ A+Y+D + K + + R LL+ + T + L
Sbjct: 113 -GGRKRKSILCDLFESVLGAMYLDGGIEPAKEF-VHRFLLDDVETKSLFYDAK---STLQ 167
Query: 213 KLCQKNGKQV 222
+ CQK+G+Q+
Sbjct: 168 EFCQKHGRQL 177
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,391,922,085
Number of Sequences: 23463169
Number of extensions: 214374049
Number of successful extensions: 633584
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4003
Number of HSP's successfully gapped in prelim test: 1023
Number of HSP's that attempted gapping in prelim test: 619125
Number of HSP's gapped (non-prelim): 9096
length of query: 370
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 226
effective length of database: 8,980,499,031
effective search space: 2029592781006
effective search space used: 2029592781006
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)