BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017515
(370 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LTQ0|RTL2_ARATH Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana GN=RTL2 PE=1
SV=1
Length = 391
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/347 (55%), Positives = 268/347 (77%), Gaps = 8/347 (2%)
Query: 26 SLP-SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALS 84
S+P S EME ++ VE I+NY F NK LL+EA+TH+S TD SY+RLEFIGD+A+GLA+S
Sbjct: 50 SVPVSSEME-SMEAVEKILNYKFSNKSLLKEAITHTSCTDFPSYERLEFIGDSAIGLAIS 108
Query: 85 NYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS 144
NY++L YP L+P LSLLRAAN+STEKLARV++ HG Y F+R +A +LD+KVKEF+EAV
Sbjct: 109 NYLYLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVG 168
Query: 145 QEDNTAV-YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ED+ +V YGG +KAPKVLAD+ ES+A A+YVD++FDLQ+LW+IFRGLLEPIVTL++LQ+
Sbjct: 169 KEDDLSVSYGGLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQK 228
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
QPQPV++LFKLC K+ K++DIK+W+ +IA +Y+D +AS +E K+IA+L AA+EA
Sbjct: 229 QPQPVSMLFKLCHKHKKRIDIKNWKDGNVSIAVIYLDDELLASGRAENKDIARLIAAKEA 288
Query: 264 LEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDK 323
L KL++ PV + D+ + ++ AK KL+E+C KKKWPKP Y +E+D K
Sbjct: 289 LRKLSEVFPVEM----VIDEDSVEIQLTHAKTKLNEICLKKKWPKPIYSVEEDRSSVQGK 344
Query: 324 KFMSAVQIATT-DGVLFITGDEKSRVKDAENSAASMMLRALRESTYL 369
+F+ + +I T + L++ GDE+S++K AE+S+A M+RALR+S YL
Sbjct: 345 RFVCSAKIKITEEKTLYMKGDEQSKIKKAESSSAYHMIRALRKSHYL 391
>sp|Q6ATG6|RTL2_ORYSJ Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica
GN=Os05g0271300 PE=2 SV=2
Length = 317
Score = 285 bits (729), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 154/296 (52%), Positives = 194/296 (65%), Gaps = 12/296 (4%)
Query: 27 LPSP----EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD-STSYQRLEFIGDAALGL 81
LP P + +A VE ++ Y F++ RLLEEALTH S+ D + SYQRLEF+GD+ALGL
Sbjct: 24 LPPPGFVADRAEAAARVERLLRYQFRDGRLLEEALTHQSFADDAVSYQRLEFVGDSALGL 83
Query: 82 ALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE 141
A SN+++L P L PG LS LRAANISTEKLARVAV+H Y +R + LD V +F E
Sbjct: 84 AFSNFLYLTNPTLGPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIE 143
Query: 142 AVSQED----NTAVYGGS-IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV 196
V QE +T YGGS +KAPKVLADIVE+IAAA+YVD FDL+KLW + R L EPI+
Sbjct: 144 TVKQEPEDDLSTVPYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPII 203
Query: 197 TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK 256
T E + + QPVT+L +LCQK+GK K W+K + +V+V G V SSEQK IAK
Sbjct: 204 TAETIDE--QPVTMLHELCQKHGKMAQFKTWQKGGMTVVNVFVAGELVGIGSSEQKVIAK 261
Query: 257 LNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYK 312
LNAAR+A KLA + DE E+ KQKL+E C ++ WPKP +K
Sbjct: 262 LNAARDATRKLAGAKKQVLTTGVGNGLGDEIGELRECKQKLNEQCSRQNWPKPIFK 317
>sp|Q9FKF0|RTL3_ARATH Ribonuclease 3-like protein 3 OS=Arabidopsis thaliana GN=RTL3 PE=2
SV=1
Length = 957
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 137/393 (34%), Positives = 202/393 (51%), Gaps = 71/393 (18%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQ 93
++V VE I+NY+F NK LL+EA+T S + RLEF GD+ L +A +NY+ YP
Sbjct: 2 NSVEAVEKILNYSFVNKTLLKEAITQKSPL----FDRLEFFGDSILEVAFTNYICHTYPN 57
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
L +L LR AN+S EK AR+AV H + F+ +L KVK FAEAV +ED+ YG
Sbjct: 58 LKVKELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAEAVRKEDDPVPYG 117
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQ-PVTLLF 212
G +KAPK+LAD +ESIAA +++D+++D+++LW IFR LLEPI T ++L QP+ P LF
Sbjct: 118 GLVKAPKILADTLESIAATVFIDVNYDVKRLWEIFRSLLEPIYTPDDLLLQPKLPFLTLF 177
Query: 213 KLCQKNGKQ--VDIKHWRKNRK----NIASVYVDGSFVASASSE--QKEIAKLNAAREA- 263
+L K+G + I+ + K N + VD V S E E+ L+ E
Sbjct: 178 RLADKHGSESTSGIRKMTTSTKILLRNKDCLDVDLEDVKGKSFEICSTELFSLSTVSENS 237
Query: 264 -LEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKK----------------- 305
++++Q V D+ E E K KL E+C +K
Sbjct: 238 LTDEMSQEEVV-------IDEDSPNVEPEDVKGKLFEICYTRKLQIQTGSSGNPLTYEMT 290
Query: 306 ------------------------------WPKPSYKIEKDEGPSHDKKFMSAV--QIAT 333
WP+P + +++++GP ++ KF+ +V +I
Sbjct: 291 TKQMVVDKDSLHVEPVNGRGELIEICTKNKWPRPIFSVQEEKGPKNEPKFVCSVKIEIPN 350
Query: 334 TDGVLFITGDEKSRVKDAENSAASMMLRALRES 366
+G + GD KS+ K AENS A M+RAL S
Sbjct: 351 IEGTFHMKGDIKSKKKQAENSLAYHMIRALESS 383
Score = 199 bits (506), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 106/248 (42%), Positives = 165/248 (66%), Gaps = 9/248 (3%)
Query: 29 SPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVF 88
S EM+ +V VE I+NY+F NK LL+E LTH+ +S +Q L F+G++AL LA + +++
Sbjct: 408 SSEMDSSVEAVEKILNYSFVNKTLLKELLTHN---NSPLFQGLMFVGESALSLAFTKHLY 464
Query: 89 LAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN 148
L YP L+P LS+LR AN +K A VAVK G Y+ S + +F E + +ED+
Sbjct: 465 LTYPMLEPKDLSVLRDANTCHDKYACVAVKKGIYQSFIGSVPKPEKMTTDFIELMGKEDD 524
Query: 149 TAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQ-PQP 207
+KAPK+L +++ +A A+Y+D+ +++Q+L IFR LLEPI TL++L+ Q QP
Sbjct: 525 PYRV---VKAPKILVNLLAGVAGAVYIDVKYNVQRLLEIFRVLLEPIYTLDDLRMQLKQP 581
Query: 208 VTLLFKLCQKNGKQVDIKHWRK--NRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+LF+L K+GKQ+D ++ + +RKNIA VY+D F+AS +++ + AKL AA EA++
Sbjct: 582 FLMLFRLADKHGKQIDFRYSKDGGSRKNIAQVYMDDMFIASGCAKRIDTAKLLAAEEAIQ 641
Query: 266 KLAQSMPV 273
KL++ MP+
Sbjct: 642 KLSECMPI 649
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 10/140 (7%)
Query: 229 KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKF 288
+N + V G S S E + + E + M V+ D +
Sbjct: 782 ENSPYVEPVDTKGKLFESCSVESSSLPTTSENPSTYEMTTKQMVVDKDSPHV-------- 833
Query: 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAV--QIATTDGVLFITGDEKS 346
E E K KL E+C K KWP P + +E++ G +++K + +V +I +G I GD K
Sbjct: 834 EPEDEKGKLFEICAKNKWPNPIFSVEEERGQQNEQKIVCSVKIEIPNIEGTFHIKGDAKP 893
Query: 347 RVKDAENSAASMMLRALRES 366
K+AENS+A M+RAL S
Sbjct: 894 TKKEAENSSADHMIRALESS 913
>sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica
GN=DCL1 PE=3 SV=1
Length = 1883
Score = 205 bits (521), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 123/334 (36%), Positives = 194/334 (58%), Gaps = 13/334 (3%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
++ ++ F+NK LL EA+TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1541 LKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPP 1600
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE---DNTAVYG 153
G+L+ LRAA ++ E ARVAVKH + +RH ++AL+ +++EF + V +E +G
Sbjct: 1601 GRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFG 1660
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DIVESIA AI++D +D +W +F+ LL P+VT E L PV L
Sbjct: 1661 LGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPM--HPVRELQ 1718
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
+ CQ+ + ++ K R V+VDG + A + QK++A+ AAR AL L +
Sbjct: 1719 ERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNALVVLKEKET 1778
Query: 273 VNCDVCEIFDDIDEKFEIEA-AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI 331
E D ++K + +Q L+++C +++WP P Y+ + GP+H K+F+ +V++
Sbjct: 1779 ATKK--EDERDGEKKNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRV 1836
Query: 332 ATTDGVLF--ITGDEKSRVKDAENSAASMMLRAL 363
T+D G+ VK A++SAA ++L L
Sbjct: 1837 NTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELL 1870
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 37/173 (21%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+++II+Y ++LE ALT +S ++ Y+R E +GDA L +S ++FL YPQ GQ
Sbjct: 1324 LKDIIDYPVPATKILE-ALTAASCQETLCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1382
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFV--------RHSAAAL----DDKVKEFAEAVSQE 146
L+ +R +S L + A+ ++ R +A + D++ +E+ ++ E
Sbjct: 1383 LTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAAPGVLPVFDEESREYEPSIFDE 1442
Query: 147 DNTA--------------------VYGGS----IKAPKVLADIVESIAAAIYV 175
++T + G S + + K LAD+VE++ YV
Sbjct: 1443 ESTGCELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYV 1495
>sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1
SV=2
Length = 1909
Score = 203 bits (517), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 189/348 (54%), Gaps = 22/348 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E + Y FK K LL EA+TH+S S + YQRLEF+GDA L ++ ++F Y L P
Sbjct: 1562 LERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPP 1621
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG--- 153
G+L+ LRAA ++ E ARVAVKH + ++RH ++AL+ +++EF + V E + +
Sbjct: 1622 GRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFG 1681
Query: 154 -GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
G KAPKVL DIVESIA AI++D D W +F+ LL+P+VT E L PV L
Sbjct: 1682 LGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPM--HPVRELQ 1739
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIA------------KLNAA 260
+ CQ+ + ++ K R V++DG V A + QK++A K
Sbjct: 1740 ERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEI 1799
Query: 261 REALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPS 320
E+ EK + D E + + +Q L+++C +K WP PSY+ K+ GP+
Sbjct: 1800 AESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPA 1859
Query: 321 HDKKFMSAVQIATTDGVLF--ITGDEKSRVKDAENSAASMMLRALRES 366
H K+F V++ T+D G+ VK A++SAA ++L L ++
Sbjct: 1860 HAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKT 1907
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 35/172 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
++N+I+Y ++LE ALT +S ++ Y+R E +GDA L +S ++FL YPQ GQ
Sbjct: 1346 LKNLISYPIPTSKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQ 1404
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFV--------RHSAAAL----DDKVKEFAEA---- 142
L+ +R +S L + A+ G ++ R SA + D+ K+ +
Sbjct: 1405 LTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDE 1464
Query: 143 ----VSQEDNTAVYGGSIK--------------APKVLADIVESIAAAIYVD 176
VS+E++ G ++ + K LAD+VE++ YV+
Sbjct: 1465 EQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVE 1516
>sp|Q69KJ0|RTL3_ORYSJ Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica
GN=Os06g0358800 PE=2 SV=1
Length = 299
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/260 (42%), Positives = 162/260 (62%), Gaps = 19/260 (7%)
Query: 39 VENIINYNFKNKRLLEEALTHSS----YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQL 94
VE+++ Y F++K L+EEALTH S Y +Y+RLE++GDA L +S VFL Y QL
Sbjct: 42 VESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSREVFLTYGQL 101
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
PG L+ LRAAN+ EKLARVAV HG + F+RH A LD ++ +F E +S + G
Sbjct: 102 QPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMYPIHS--NG 159
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL 214
+ PKVL D+VES+ AIY D +F+ + +W +F+ L +P+++LE L + PV+ LF+
Sbjct: 160 LLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGK--HPVSELFEF 217
Query: 215 CQKNGKQVDI--KHWRKNRKNIASVYVDGSFVASAS-SEQKEIAKLNAAREALEKL---- 267
CQK + V I W KN V +DG V A+ +++KEIA+ AA+ AL+KL
Sbjct: 218 CQKTRRGVKIVKDEWDKNL--TVEVLIDGEMVGRATYAQKKEIAQNRAAKAALDKLKETL 275
Query: 268 --AQSMPVNCDVCEIFDDID 285
+Q+ P++ +V E F+ ID
Sbjct: 276 GQSQTEPMSAEVSEQFNKID 295
>sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica
GN=DCL3A PE=2 SV=1
Length = 1651
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 133/427 (31%), Positives = 202/427 (47%), Gaps = 81/427 (18%)
Query: 18 LLKEAMLTSLPSPEMEDAVF-YVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEF 73
+L ++ T LP +D VF +E + Y+F K LL EALTH S + Y+RLEF
Sbjct: 1226 ILSASVQTYLP----KDNVFEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEF 1281
Query: 74 IGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALD 133
+GDA L + L+ Y+F ++ + G+L+ LR+A+++ E A+VAVKH F+ F++HS+ L
Sbjct: 1282 LGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLL 1341
Query: 134 DKVKEFA---EAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRG 190
D++ E+ E S + + G K PKVL DIVESIA AI +D DL +W IF
Sbjct: 1342 DQITEYVNRLEGSSMDKVELLSDGLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEP 1401
Query: 191 LLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYV---DGSFVASA 247
LL PIVT E L+ P L + C K+G V I + +A++ V + V
Sbjct: 1402 LLSPIVTPENLEL--PPYRELIEWCGKHGYFVGINCRDQGDTVVATLDVQLKEVLLVRQG 1459
Query: 248 SSEQKEIAKLNAAREALEKLAQS---MPVNCDVCEIF---------------DDIDEKF- 288
S++++ AK +A+ L+ L + +P N E F D +D +
Sbjct: 1460 FSKKRKDAKAHASSLLLKDLEEKGLIIPKNASKTEQFEKHCGSTNPFNNLHVDAMDTQTP 1519
Query: 289 ----EIEAAKQK-------------------------LHELCGKKKWPKPSYKIEKDE-- 317
E AA + L+ELC K +WP P+ + EK +
Sbjct: 1520 KPTKEKNAADSRNISDPLLGKPLHVIVKTSKGGPRIALYELCKKLQWPMPTMESEKVQPS 1579
Query: 318 --------GPSHDKKFMSAVQIATT-------DGVLFITGDEKSRVKDAENSAASMMLRA 362
G S K A A+T V+ +TGD ++ K +++SAA +L
Sbjct: 1580 FSSVCSSPGGSSQKATPQAFAFASTITLHIPNADVISLTGDGRADKKSSQDSAALFLLYE 1639
Query: 363 LRESTYL 369
L+ L
Sbjct: 1640 LQRRGTL 1646
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ EA+T ++ S +RLE +GD+ L A+S ++FL +P D GQLS +R I
Sbjct: 1049 LILEAITTLRCSEDFSMERLELLGDSVLKYAVSCHLFLKFPNKDEGQLSSIRCHMICNAT 1108
Query: 112 LARVAVKHGFYKFVRHSA 129
L ++ ++ +VR +A
Sbjct: 1109 LYKLGIERNVQGYVRDAA 1126
>sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana GN=DCL3 PE=1
SV=2
Length = 1580
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 160/323 (49%), Gaps = 38/323 (11%)
Query: 33 EDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYP 92
ED + +E I + F K LL+EA+THSS +S SY+RLEF+GD+ L ++ ++F Y
Sbjct: 1195 EDELIELERKIQHEFSAKFLLKEAITHSSLRESYSYERLEFLGDSVLDFLITRHLFNTYE 1254
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
Q PG+++ LR+A ++ E A+VAVK+ + ++ A L+ ++ ++ + + D T
Sbjct: 1255 QTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRS 1314
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF 212
SI+ PK L D+VESIA A+ +D DL ++W +F LL P+VT ++LQ P L
Sbjct: 1315 IPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPP--YRELN 1372
Query: 213 KLCQKNGKQVDIKHWRKNRKNIASVYV--DGSFVASASSEQK--------------EIAK 256
+LC G +K K A++ + D + SEQ ++ K
Sbjct: 1373 ELCDSLGYFFRVKCSNDGVKAQATIQLQLDDVLLTGDGSEQTNKLALGKAASHLLTQLEK 1432
Query: 257 LNAARE-ALEKLAQSMPVN--CDVCEIFDDIDEKFEIEA---------------AKQKLH 298
N +R+ +L SM VN C+ + E EI++ + LH
Sbjct: 1433 RNISRKTSLGDNQSSMDVNLACNHSDRETLTSETTEIQSIVIPFIGPINMKKGGPRGTLH 1492
Query: 299 ELCGKKKWPKPSYKI--EKDEGP 319
E C K WP P++ EK P
Sbjct: 1493 EFCKKHLWPMPTFDTSEEKSRTP 1515
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+I N++ + +LE A+T + +S S +RLE +GD+ L S ++FL YP D GQLS
Sbjct: 995 SIDNFSISSTSILE-AVTTLTCPESFSMERLELLGDSVLKYVASCHLFLKYPDKDEGQLS 1053
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSA 129
R + IS L R+ ++R+ A
Sbjct: 1054 RQRQSIISNSNLHRLTTSRKLQGYIRNGA 1082
>sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica
GN=DCL2A PE=2 SV=1
Length = 1410
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 126/239 (52%), Gaps = 14/239 (5%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS---TSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E ++ Y F + LL EALTH SY S + YQRLEF+GDA L + Y + YP
Sbjct: 1164 LEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCT 1223
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG-- 153
P L+ LR+A+++ A AVK G K + HS++ L K+ + E Q YG
Sbjct: 1224 PELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGWE 1283
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
I PKVL D++ESIA AIY+D D + +W + LLEP+ T E + +P PV L +
Sbjct: 1284 AGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETI--EPDPVKGLQE 1341
Query: 214 LCQKNGKQVDIKHWRKNRKNIASVYV-----DGSFVASASSEQKEIAKLNAAREALEKL 267
C + + I + + + ++SV + ++ A+ S K +AK A++ L+ L
Sbjct: 1342 FCDR--RSFKITYEKNHVDGVSSVIARVKAGETTYSATKSGPCKLVAKKLASKAVLKDL 1398
>sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica
GN=DCL3B PE=2 SV=2
Length = 1637
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/416 (26%), Positives = 193/416 (46%), Gaps = 69/416 (16%)
Query: 15 DYRLLKEAMLTS--LPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQ 69
D +LL+E + L S + + +E + YNF K LL EA+TH S + YQ
Sbjct: 1218 DMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQ 1277
Query: 70 RLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSA 129
RLEF+GD+ L L L+ +++ + +DPG+L+ LR+A +S E A+ V++ + ++H +
Sbjct: 1278 RLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGS 1337
Query: 130 AALDDKVKEFAEA---VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM 186
L +++ E+ + +++ + + K PKVL DI+ESIA A+++D DF++ +W
Sbjct: 1338 GILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWE 1397
Query: 187 IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYV---DGSF 243
IF LL P++T ++L P L +LC G ++ K K + I + + D
Sbjct: 1398 IFEPLLSPLITPDKLAL--PPYRELLELCSHIGCFLNSKCTSKGEEVIIEMSLQLRDELL 1455
Query: 244 VASASSEQ----------KEIAKLN----AAREALEKLAQSMPVNCDVCEIFD------- 282
VA + +A L + ++ L K Q V D+ FD
Sbjct: 1456 VAQGHDRNKKRAKAKAASRILADLKQQGLSIKQCLSKAKQLDIVTSDL--QFDLTSSGTQ 1513
Query: 283 ----DIDE------------------KFEIEAAKQKLHELCGKKKWPKPSYKI--EKDEG 318
D+++ K E + L +LC +WP P ++ ++
Sbjct: 1514 LSYSDLNDYHILEGLSSVKKEVVLPLKMEKGGPRSALFKLCKILQWPMPEFEFVEQRFRT 1573
Query: 319 P--------SHDKKFMSAVQIATTDG-VLFITGDEKSRVKDAENSAASMMLRALRE 365
P ++ F+S + + D + G+ ++ K A++SA+ MML L+E
Sbjct: 1574 PIVMDGATTTNFNSFVSTITLHIPDATTITFQGERRTDKKSAQDSASLMMLHKLQE 1629
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
L+ EA+T ++ S +RLE +GD+ L + +FL YP GQLS +R+ +
Sbjct: 1048 LILEAITTLRCCETFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNAT 1107
Query: 112 LARVAVKHGFYKFVRHSA 129
L + + +VR +A
Sbjct: 1108 LHKHGIWRSLQGYVRDNA 1125
>sp|Q5JK90|RTL1_ORYSJ Ribonuclease 3-like protein 1 OS=Oryza sativa subsp. japonica
GN=Os01g0551100 PE=2 SV=1
Length = 256
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 134/233 (57%), Gaps = 25/233 (10%)
Query: 44 NYNFKNKR--LLEEALTHSSY-----TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
Y+F++ LLE+ALTHS + +QRLEF+GDAALGLA + + P LD
Sbjct: 30 GYSFRDGGALLLEDALTHSVHPRDEAGGRARHQRLEFLGDAALGLAFATIFYRDDPGLDQ 89
Query: 97 GQLSLLRAANISTEKLARVAV-KHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGS 155
G L++LR+AN+ST+KLARVAV + + R++ A D +V F ++V G
Sbjct: 90 GDLTVLRSANVSTQKLARVAVRRRLYPLLRRYNCAPQDHEVSRFTKSV----EGPYSGDP 145
Query: 156 IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLC 215
I+ P+VLADIVE+I A+Y+D DL+ L + + L EPI+T + L + P+ ++L +L
Sbjct: 146 IEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKLLCEPIITKKALLEDPE--SMLNELG 203
Query: 216 QKNGKQVDIK--HWRKNRKNIASVYVDGSFVASASS-----EQKEIAKLNAAR 261
++ + ++IK WRK +A+V DG A +S + E+ KL R
Sbjct: 204 GEHREDLEIKILAWRK----VANVVDDGREQAITTSGLGNGSEDEVGKLRTIR 252
>sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2
Length = 1702
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 19/243 (7%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYT--DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+EN ++Y F +K LL +A H SY YQRLEF+GDA L +++Y F +P+L P
Sbjct: 1295 LENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKP 1354
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQL+ LR+ +++ E LA VAV +F+ + L + ++++ ++ +
Sbjct: 1355 GQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEGP 1414
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
+ PKVL D+VES A+++D F+L +W + L+P+ L LQ P+ L +LCQ
Sbjct: 1415 RCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQI--SPIKELIELCQ 1472
Query: 217 KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA-----REALEKLAQSM 271
++ +R+ I++ DG+F + +A RE +K AQ M
Sbjct: 1473 S---------YKWDRE-ISATKKDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQLM 1522
Query: 272 PVN 274
N
Sbjct: 1523 ITN 1525
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 29/151 (19%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
EALT + S +RLE +GDA L A+S ++FL + LD G+L+ R+ ++ L R
Sbjct: 1105 EALTTEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCR 1164
Query: 115 VAVKHGFYKFVRHSAAALDDKVKEFA----------EAVSQEDNT--------AVYGGSI 156
+A+K ++R A D + FA E S+E ++ G I
Sbjct: 1165 LAIKKNLQVYIRDQAL---DPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGEI 1221
Query: 157 KAP--------KVLADIVESIAAAIYVDIDF 179
+ K +AD+VE++ A VD F
Sbjct: 1222 RCSKGHHWLYKKTIADVVEALVGAFLVDSGF 1252
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDG---VLFITGDEKSR 347
+ AK LHE C W P ++ ++EGP H K F+ V + D L G+ ++
Sbjct: 1620 KTAKSLLHETCVANCWKPPHFECCEEEGPGHLKSFVYKVILEVEDAPNMTLECYGEARAT 1679
Query: 348 VKDAENSAASMMLRALRESTYLC 370
K A AA + L+ S +LC
Sbjct: 1680 KKGAAEHAAQAAIWCLKHSGFLC 1702
>sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300
PE=1 SV=2
Length = 1388
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 134/249 (53%), Gaps = 24/249 (9%)
Query: 36 VFYVENIINYNFKNKRLLEEALTHSSYT---DSTSYQRLEFIGDAALGLALSNYVFLAYP 92
V Y+E+++NY+F++K LL EALTH SY YQRLEF+GD+ L ++ +++ YP
Sbjct: 1149 VGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYP 1208
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
L PG L+ +R+A+++ E A VAVK +K + +++ L + Q + +
Sbjct: 1209 CLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTF 1268
Query: 153 G--GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTL 210
G I PKVL D++ES+A AI+VD ++ + ++ + LL ++T E ++ PV
Sbjct: 1269 GWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKL--HPVRE 1326
Query: 211 LFKLCQKNGKQVDIKHWR---KNRKNIASVYV-----DGSFVASASSEQKEIAKLNAARE 262
L +LCQK W+ K+ S V + SF +A + K++AK A +E
Sbjct: 1327 LTELCQK---------WQFELSKAKDFDSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKE 1377
Query: 263 ALEKLAQSM 271
L L S+
Sbjct: 1378 VLNLLKNSL 1386
>sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica
GN=DCL2B PE=2 SV=2
Length = 1377
Score = 122 bits (305), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 124/239 (51%), Gaps = 18/239 (7%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS---TSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E ++ Y F + LL EALTH SY S + YQRLEF+GDA L + Y + YP
Sbjct: 1135 LEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCT 1194
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG-- 153
P L+ LR+A+++ A AVK G K + HS++ L K+ + + Q YG
Sbjct: 1195 PELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYY---LGQSFTGPSYGWE 1251
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFK 213
I PKVL D++ESIA AIY+D D + +W + LLEP+ T E + +P PV L +
Sbjct: 1252 AGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETI--EPDPVKGLQE 1309
Query: 214 LCQKNGKQVDIKHWRKNRKN-----IASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
C + ++ + KN + IA V + ++ S ++AK A++ L+ L
Sbjct: 1310 FCDRRSFKIT---YEKNHVDGVSSVIARVKAGETTYSATKSGPCKLAKKLASKAVLKDL 1365
>sp|Q9VCU9|DCR1_DROME Endoribonuclease Dcr-1 OS=Drosophila melanogaster GN=Dcr-1 PE=1 SV=1
Length = 2249
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 125/247 (50%), Gaps = 23/247 (9%)
Query: 40 ENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E + Y F+++ L +A+TH+SYT + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1997 EESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSP 2056
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY---- 152
G L+ LR+A ++ A +AV+HGF+KF RH + L+D + F + QE+ +
Sbjct: 2057 GALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR-IQQENGHCISEEYY 2115
Query: 153 ---------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
++ PK L D+ ESIA AI++D + L +W ++ ++ P +
Sbjct: 2116 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSV 2175
Query: 204 QPQPVTLLFKL---CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
P+ L +L K GK + R+ R + V+ G+F + + IAK AA
Sbjct: 2176 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTV-DVFCKGTFRGIGRNYR--IAKCTAA 2232
Query: 261 REALEKL 267
+ AL +L
Sbjct: 2233 KCALRQL 2239
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 46/78 (58%)
Query: 41 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
+++ + + ++ +ALT S+ D + +RLE IGD+ L A++ Y+++ Y + G+LS
Sbjct: 1714 DLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLS 1773
Query: 101 LLRAANISTEKLARVAVK 118
LR+ ++ L R+ +
Sbjct: 1774 HLRSKQVANLNLYRLGRR 1791
>sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica
GN=DCL4 PE=2 SV=1
Length = 1657
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 124/239 (51%), Gaps = 16/239 (6%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDP 96
+E +I Y FK+K LL +A H S++ + YQRLEF+GDA L +++Y++ YP + P
Sbjct: 1217 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKP 1276
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
GQ++ LR+ + + LA AV+ +K + + L + +F V ++
Sbjct: 1277 GQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEP 1336
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ 216
PK L DIVES A+ +D F+L +W + LL+P++T + P+ L +LCQ
Sbjct: 1337 ACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHT--NPMRELRELCQ 1394
Query: 217 KNGKQV--------DIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
+G ++ D ++ K NI S + + +A++ + A+ AA+E L KL
Sbjct: 1395 CHGFELGLPKPMKADGEYHVKVEVNIKSKII----ICTAANRNSKAARKFAAQETLSKL 1449
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQI---ATTDGVLFITGDEKSR 347
+ A+ L ELC W P +K+ K+EGPSH +KF V + + +L D K +
Sbjct: 1568 KTARSFLFELCAANYWKPPEFKLCKEEGPSHLRKFTYKVVVEIKGASATLLECHSDGKLQ 1627
Query: 348 VKDAENSAASMMLRALRESTYL 369
K A+ AA L L++ +L
Sbjct: 1628 KKAAQEHAAQGALWCLKQLGHL 1649
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 19 LKEAMLTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAA 78
LK+ ML+S P E + I+ EALT + S +R E +GDA
Sbjct: 1008 LKDVMLSSFP----EASQISASGIL-----------EALTTEKCLERISLERFEVLGDAF 1052
Query: 79 LGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
L + + F+ Y LD GQL+ R+ ++ L ++++ ++R
Sbjct: 1053 LKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1100
>sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio GN=dicer1 PE=2 SV=2
Length = 1865
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E+ INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1613 ESKINYTFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1672
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1673 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1732
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1733 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1792
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1793 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1851
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1852 LRSLKANQP 1860
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1275 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1334
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1335 NCNLYRLGKKKGL 1347
>sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus GN=DICER1 PE=2 SV=3
Length = 1921
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY+FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1669 EKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1728
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1729 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSEL 1788
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1789 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANV 1848
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1849 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1907
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1908 LRSLKANQP 1916
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1294 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1353
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1354 NCNLYRLGKKKGL 1366
>sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens GN=DICER1 PE=1 SV=3
Length = 1922
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1789
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1790 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1849
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1850 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1908
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1909 LRSLKANQP 1917
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKKGL 1365
>sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus GN=Dicer1 PE=1 SV=3
Length = 1916
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 118/249 (47%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1664 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1723
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1724 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSEL 1783
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ +++P++
Sbjct: 1784 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANV 1843
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1844 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1902
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1903 LRSLKANQP 1911
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKKGL 1365
>sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseus GN=DICER1 PE=2 SV=3
Length = 1917
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1665 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1724
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1725 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1784
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1785 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSANV 1844
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1845 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1903
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1904 LRSLKANQP 1912
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1352
Query: 109 TEKLARVAVKHGF 121
L R+ K G
Sbjct: 1353 NCNLYRLGKKKGL 1365
>sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus GN=DICER1 PE=2 SV=3
Length = 1923
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 117/249 (46%), Gaps = 17/249 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1671 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1730
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1731 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSEL 1790
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ ++ P++
Sbjct: 1791 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV 1850
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1851 PRSPVRELLEMEPEITKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1909
Query: 264 LEKLAQSMP 272
L L + P
Sbjct: 1910 LRSLKANQP 1918
Score = 38.5 bits (88), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP--GQLSLLRAAN 106
N L+ +ALT S+ +D + +RLE +GD+ L A++ V L+ LD G+LS +R+
Sbjct: 1293 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITT-VSLSALILDAHEGRLSYMRSKK 1351
Query: 107 ISTEKLARVAVKHGF 121
+S L R+ K G
Sbjct: 1352 VSNCNLYRLGKKKGL 1366
>sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicalis GN=dicer1 PE=2 SV=2
Length = 1893
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 17/244 (6%)
Query: 40 ENIINYNFKNKRLLEEALTHSSY---TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDP 96
E INY FKNK L +A TH+SY T + YQRLEF+GDA L ++ +++ Q P
Sbjct: 1641 EKKINYPFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1700
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G L+ LR+A ++ A +AVK+ ++K+ + + L + +F + +++ +
Sbjct: 1701 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSEL 1760
Query: 157 K-------------APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQ 203
+ PK + DI ES+A AIY+D L+ +W ++ +++P++
Sbjct: 1761 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWHVYYPMMQPLIEKFSANV 1820
Query: 204 QPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263
PV L ++ + K + + + +V V G IAK AAR A
Sbjct: 1821 PRSPVRELLEMEPETAKFSPAERTYDGKVRV-TVEVVGKGKFKGVGRSYRIAKSAAARRA 1879
Query: 264 LEKL 267
L L
Sbjct: 1880 LRSL 1883
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 49 NKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIS 108
N L+ +ALT S+ +D + +RLE +GD+ L A++ Y+F YP G+LS +R+ +S
Sbjct: 1270 NPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVS 1329
Query: 109 TEKLARVAVKHG 120
L R+ K G
Sbjct: 1330 NCNLYRLGKKKG 1341
>sp|Q0UI93|DCL1_PHANO Dicer-like protein 1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC
MYA-4574 / FGSC 10173) GN=DCL1 PE=3 SV=2
Length = 1522
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 118/249 (47%), Gaps = 29/249 (11%)
Query: 45 YNFKNKRLLEEALTHSS----YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
Y F+ RLL A H S + + SYQRLEF+GD+ L +A ++F YP DP L+
Sbjct: 1231 YRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYPDKDPQWLT 1290
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF---AEAVSQEDNTAV-YGGSI 156
+ +S + L V VK G++ ++ + A L +++++ E +E N AV Y S+
Sbjct: 1291 EHKTPMVSNKFLGAVCVKLGWHTHMKQNTAILSSQIRDYVYEVEEAEREANGAVDYWVSV 1350
Query: 157 -KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQ--QPQPVTL 210
+ PK LAD++E+ AAI+VD +FD + F L+P +TL+ + P T
Sbjct: 1351 SEPPKCLADVIEAFVAAIFVDSEFDFNVVQKFFDLHLKPFFLDMTLDAYENFASNHPTTR 1410
Query: 211 LFKLCQKNGKQVDIKHWR------------KNRKNIASVYVDGSFVASASSEQKEIAKLN 258
L +L N WR K + A V + + + A++
Sbjct: 1411 LSRLLSIN---FGCSEWRMGALETETLIPGKGKAIAAMVMIHDKVHFHSLGQSGRYARVR 1467
Query: 259 AAREALEKL 267
A+ ALEKL
Sbjct: 1468 ASHAALEKL 1476
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAV-KHGFYKFV 125
+Y+RLEF+GD L +A S VF+ P+ + + + R + + L AV K YK+V
Sbjct: 1049 NYERLEFLGDCFLKVATSLSVFVQQPEENEFEFHVRRMLMLCNQNLMETAVGKKKLYKYV 1108
Query: 126 RHSA 129
R A
Sbjct: 1109 RTDA 1112
>sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis elegans GN=dcr-1 PE=1 SV=3
Length = 1910
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 114/251 (45%), Gaps = 20/251 (7%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLD 95
+E I Y FK + L +A TH+SY + + YQRLEF+GDA L ++ Y+F Q
Sbjct: 1646 LEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDSRQYS 1705
Query: 96 PGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED-----NTA 150
PG L+ LR+A ++ A +AVK F K L +++F + S+ + N
Sbjct: 1706 PGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSERNFDTNFNAE 1765
Query: 151 VY------------GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTL 198
+Y I+ PK + DI ES+A AIY+D +L W + ++ + L
Sbjct: 1766 MYMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMRGTIEL 1825
Query: 199 EELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLN 258
P+ L + Q + ++ ++ K +V V + + IAK
Sbjct: 1826 CCANPPRSPIRELMEFEQSKVRFSKMERILESGKVRVTVEVVNNMRFTGMGRNYRIAKAT 1885
Query: 259 AAREALEKLAQ 269
AA+ AL+ L Q
Sbjct: 1886 AAKRALKYLHQ 1896
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 52 LLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111
LL ALT S+ D S +R E IGD+ L A ++Y++ G+LS R+ +S
Sbjct: 1396 LLLTALTTSNAADGMSLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSNCN 1455
Query: 112 LARVAVKHGFYKFV 125
L R+ K G + +
Sbjct: 1456 LYRLGKKLGIPQLI 1469
>sp|A4RKC3|DCL1_MAGO7 Dicer-like protein 1 OS=Magnaporthe oryzae (strain 70-15 / ATCC
MYA-4617 / FGSC 8958) GN=DCL1 PE=3 SV=2
Length = 1591
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 102/210 (48%), Gaps = 24/210 (11%)
Query: 24 LTSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAAL 79
L++ PS + ++N + Y FKN RLL A H SY + SYQRLEF+GD+ L
Sbjct: 1231 LSTPPSQTQLELCSQIKNKMGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLEFLGDSLL 1290
Query: 80 GLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
+ +Y+F +P DP L+ + A +S + VAV GF++ + H AL + E+
Sbjct: 1291 DMVCVDYLFKKHPDKDPQWLTEHKMAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEW 1350
Query: 140 AEAVSQE----DNTAVYGGSIK-------------APKVLADIVESIAAAIYVDIDFDLQ 182
AE V+++ AV G + PK L DI+E+ A++VD +D
Sbjct: 1351 AELVTKKREEARQLAVRRGQREEDYARDFWIEVHHPPKCLPDILEAYVGALFVDTGYDYS 1410
Query: 183 KLWMIFRGLLEPI---VTLEELQQQPQPVT 209
+ F ++P +++ ++ PVT
Sbjct: 1411 AVVGFFDRHIKPYFADMSIYDMYSSKHPVT 1440
>sp|A1DE13|DCL1_NEOFI Dicer-like protein 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM
3700 / FGSC A1164 / NRRL 181) GN=dcl1 PE=3 SV=1
Length = 1538
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 123/273 (45%), Gaps = 29/273 (10%)
Query: 25 TSLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS-----TSYQRLEFIGDAAL 79
T P +D +VE + Y+F RLL A+TH S + YQRLEF+GD+ L
Sbjct: 1243 TEKPRGSEDDLARHVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLL 1302
Query: 80 GLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEF 139
+ +F +P DP L+ + A +S + L ++VK GF++ + + L ++ +
Sbjct: 1303 DMVCVEDLFRRFPDRDPQWLTEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHY 1362
Query: 140 AEAVSQEDNTAVYGGSI-------KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192
E + E A G++ PK L D+VE+ AI+VD FD Q + + F +
Sbjct: 1363 VEEI--ESAQAESRGAVDYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDFQVIEVFFERQI 1420
Query: 193 EPI---VTLEELQQQPQPVTLLF----------KLCQKNGKQVDIKHWRKNRKNIASVYV 239
+P +++ + P T L C K G+ I +A+V V
Sbjct: 1421 KPFFEDMSIYDTFANKHPTTFLHNKLTNEYGCTNYCLKAGELPTIDG--APAGVLAAVIV 1478
Query: 240 DGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272
G+ ++ A S AK+ A+ +AL L +P
Sbjct: 1479 HGNVISEARSSSSRYAKVKASEKALAVLDGLLP 1511
Score = 38.9 bits (89), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S ++ P D + R I + L A+K Y+++R
Sbjct: 1089 NYERLEFLGDCFLKMATSIALYTQNPDDDEFDYHVNRMCLICNKNLFNTAIKKQIYRYIR 1148
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI 177
+ F+ + D + G + K+L++ ++ D+
Sbjct: 1149 S---------RGFSRHIWYPDGLTLLHGKDHSKKLLSEGKHALGEKTIADV 1190
>sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dcr1 PE=1 SV=1
Length = 1374
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 8/159 (5%)
Query: 38 YVENIINYNFKNKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQ 93
Y+E I Y+FKNK+LL A H S +YQ+LEF+GDA L + Y++ YP
Sbjct: 1085 YIEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYPN 1144
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV-- 151
G+L+ ++ + + L+ + +K+++H +AA+ D + E+ E + TA
Sbjct: 1145 ATSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASEN 1204
Query: 152 --YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIF 188
+ I +PK ++D +E++ AI++D F LQ L +
Sbjct: 1205 PWFWFEIDSPKFISDTLEAMICAIFLDSGFSLQSLQFVL 1243
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 55 EALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114
+ALT + + Y RLEF GD L L S VFL +P QL R IS L +
Sbjct: 916 QALTSAESQLNFDYDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYK 975
Query: 115 VAVKHGFYKF-------VRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVE 167
VA+ K+ +RH F ++ S + AV + K +AD+VE
Sbjct: 976 VAIDCELPKYALSTPLEIRHWCPY------GFQKSTSDKCRYAVLQKL--SVKRIADMVE 1027
Query: 168 SIAAAIYVDIDFD 180
+ A +D D
Sbjct: 1028 ASIGACLLDSGLD 1040
>sp|Q1DKI1|DCL1_COCIM Dicer-like protein 1 OS=Coccidioides immitis (strain RS) GN=DCL1 PE=3
SV=3
Length = 1500
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 114/251 (45%), Gaps = 24/251 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQL 94
V+ + Y+FK +LL A TH SY + + YQRLEF+GDA L +A +++ +P
Sbjct: 1226 VKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHPDK 1285
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAV-----SQEDNT 149
DP L+ + A +S + L VAV+ G + + H + +L ++ + E + D
Sbjct: 1286 DPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYVEEIEAAELESGDPP 1345
Query: 150 AVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQ 206
+ + PK L D+VE+ AI++D F + + F+ L+ +T+ +
Sbjct: 1346 DAWTLTSDPPKCLPDMVEAYIGAIFIDSGFSFEVVEEFFQKFLKKHFEDMTIYDTYANKH 1405
Query: 207 PVTLLF----------KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK 256
P T L C K G+ + + +A+V V VA + AK
Sbjct: 1406 PTTYLHNRLAIDFGCSNYCLKAGEVPYVDG--PGTRVLAAVIVHDEVVAEGVASSSRYAK 1463
Query: 257 LNAAREALEKL 267
L A+ AL KL
Sbjct: 1464 LKASEAALSKL 1474
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R + + L + AV+ Y F+R
Sbjct: 1059 NYERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLVCNQNLFKTAVRFKLYAFIR 1118
>sp|A1CBC9|DCL1_ASPCL Dicer-like protein 1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS
513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=dcl1 PE=3 SV=2
Length = 1534
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 125/271 (46%), Gaps = 32/271 (11%)
Query: 39 VENIINYNFKNKRLLEEALTHSS-----YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQ 93
VE + Y+F+ RLL A+TH S Y YQRLEF+GD+ L + +F +P
Sbjct: 1253 VEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVPCYQRLEFLGDSLLDMVCVEDLFHRFPD 1312
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ---EDNTA 150
DP L+ + A +S + L +AVK GF+K ++ + L ++ + E + E A
Sbjct: 1313 RDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYVEEIETAEAESEGA 1372
Query: 151 V--YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQP 205
V + + PK L D+VE+ AI+VD DF + + F+ ++P +++ +
Sbjct: 1373 VDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSIYDTFANK 1432
Query: 206 QPVTLLF----------KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIA 255
P T L C K G+ I +A+V V S V+ A++ A
Sbjct: 1433 HPTTFLHNRLANEFGCTNYCLKAGEMPAIDGMPAGV--LAAVIVHNSVVSEATASSSRYA 1490
Query: 256 KLNAAREALEKLAQSMP------VNCDVCEI 280
K+ A+ AL L +P NC+ C++
Sbjct: 1491 KIRASERALVVLDGLLPYEFRQRYNCN-CQV 1520
Score = 38.9 bits (89), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L A K Y+++R
Sbjct: 1085 NYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNTAKKRQIYRYIR 1144
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI 177
+ F+ V D + G + K+L+ ++ D+
Sbjct: 1145 S---------RSFSRHVWYPDGLTLLQGKDHSKKMLSQAKHALGEKTIADV 1186
>sp|Q4WVE3|DCL1_ASPFU Dicer-like protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=dcl1 PE=3 SV=3
Length = 1537
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 120/265 (45%), Gaps = 29/265 (10%)
Query: 33 EDAVFYVENIINYNFKNKRLLEEALTHSSYTDS-----TSYQRLEFIGDAALGLALSNYV 87
+D +VE + Y+F RLL A+TH S + YQRLEF+GD+ L + +
Sbjct: 1250 DDLARHVEEELGYHFTYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDL 1309
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
F +P DP LS + A +S + L ++VK GF++ + + L ++ + E + E
Sbjct: 1310 FRRFPDRDPQWLSEHKMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEI--ET 1367
Query: 148 NTAVYGGSI-------KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VT 197
A G++ PK L D+VE+ AI+VD FD Q + F ++P ++
Sbjct: 1368 AQAESQGAVDYWVVAKDPPKCLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMS 1427
Query: 198 LEELQQQPQPVTLLF----------KLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASA 247
+ + P T L C K G+ I +A+V V G+ ++ A
Sbjct: 1428 IYDTFANKHPTTFLHNKLTNEYGCTNYCLKAGELPTIDG--APATVLAAVIVHGNVISEA 1485
Query: 248 SSEQKEIAKLNAAREALEKLAQSMP 272
S AK+ A+ +AL L +P
Sbjct: 1486 RSSSSRYAKITASEKALAVLDGLLP 1510
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L A+K Y+++R
Sbjct: 1088 NYERLEFLGDCFLKMATSIALFSQNPNDDEFDYHVNRMCLICNKNLFNTAIKKQIYRYIR 1147
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI 177
+ F+ + D + G + K+L++ ++ D+
Sbjct: 1148 S---------RGFSRHIWYPDGLTLLHGKDHSTKLLSEGKHALGEKTIADV 1189
>sp|A2RAF3|DCL1_ASPNC Dicer-like protein 1 OS=Aspergillus niger (strain CBS 513.88 / FGSC
A1513) GN=dcl1 PE=3 SV=2
Length = 1525
Score = 91.7 bits (226), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 118/251 (47%), Gaps = 24/251 (9%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQL 94
+E ++Y F+ LL A TH SY + + YQRLEF+GD+ + + +F +P
Sbjct: 1246 IEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDR 1305
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ---EDNTAV 151
DP L+ + A +S + L +AVK G + +++ +A L ++ ++AE + E AV
Sbjct: 1306 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYAEEIQTAEGESEGAV 1365
Query: 152 --YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQ 206
+ + PK L D+VE+ A++VD DF+ + + FR ++P + + +
Sbjct: 1366 DYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKPFFEDMAIYDTFANKH 1425
Query: 207 PVTLL----------FKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK 256
P T L C K G+ I +A+V V +A ++ AK
Sbjct: 1426 PTTFLHNRLTNEFGCVNYCLKAGEMPSIDG--APAGVLAAVIVHDVVIAEGTATSGRYAK 1483
Query: 257 LNAAREALEKL 267
+ A+ +AL L
Sbjct: 1484 VKASEKALAVL 1494
Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F P D + R I + L AV YK++R
Sbjct: 1078 NYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNAAVDKEIYKYIR 1137
Query: 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIK---APKVLADIVESIAAA 172
+ E + + +D++ K A K +AD+ E++ A
Sbjct: 1138 SRGFSRHTWYPEGLKLLQGKDHSRKATTESKHALAEKTIADVCEALIGA 1186
>sp|Q2U6C4|DCL1_ASPOR Dicer-like protein 1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB
40) GN=dcl1 PE=3 SV=2
Length = 1523
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 117/258 (45%), Gaps = 28/258 (10%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQL 94
VE + Y FK RLL A TH SY + + YQRLEF+GD+ L + + +F YP
Sbjct: 1244 VEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPDK 1303
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
DP L+ + A +S + L +AVK G + +RH + L ++ +AE + +N + G
Sbjct: 1304 DPQWLTEHKMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENES--QG 1361
Query: 155 SI-------KAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQ 204
++ PK L D+VE+ A +VD DF + + F+ ++ +T+ +
Sbjct: 1362 AVDYWLVTKDPPKCLPDMVEAYLGAAFVDSDFQFRVVEDFFQRHVKSYFHDMTIYDTFAN 1421
Query: 205 PQPVTLL----------FKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEI 254
P T L C K G+ + +A+V V +A ++
Sbjct: 1422 KHPTTFLQNRLTNEYGCTNYCLKAGEIPVVDG--GTVSVLAAVIVHEVVIAEGTASSGRY 1479
Query: 255 AKLNAAREALEKLAQSMP 272
AK+ A+ +AL L P
Sbjct: 1480 AKVKASEKALSVLENMGP 1497
Score = 38.1 bits (87), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126
+Y+RLEF+GD L +A S +F+ P D + R I + L A+K Y++ R
Sbjct: 1076 NYERLEFLGDCFLKMATSISLFVQNPDDDEFDFHVNRMCLICNKNLFNTALKKELYQYTR 1135
>sp|Q5R106|RNC_IDILO Ribonuclease 3 OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM
15497 / L2-TR) GN=rnc PE=3 SV=1
Length = 229
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 96/196 (48%), Gaps = 27/196 (13%)
Query: 26 SLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSN 85
SLP P + + +E I+ Y+F+ + LL +A+TH S + ST +RLEF+GD+ LGL ++
Sbjct: 2 SLPKPPLTE----LEKIVGYSFEQQGLLHQAMTHRSAS-STHNERLEFLGDSILGLVIAE 56
Query: 86 YVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ 145
++ +P++ G LS +RAA + LA++ K G F+ L
Sbjct: 57 ALYQKFPKVAEGDLSRMRAAIVCGRSLAKLGKKMGLGDFLSLGQGELKS----------- 105
Query: 146 EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTL-EELQQQ 204
G + +LAD VE+I AIY+D D D + + EP +TL E Q
Sbjct: 106 --------GGYRRESILADAVEAIIGAIYLDSDMD--TIRQVILNWFEPQLTLIEPGTSQ 155
Query: 205 PQPVTLLFKLCQKNGK 220
P T L +L Q K
Sbjct: 156 KDPKTRLQELLQARQK 171
>sp|A5N807|RNC_CLOK5 Ribonuclease 3 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555
/ NCIMB 10680) GN=rnc PE=3 SV=1
Length = 244
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 119/254 (46%), Gaps = 44/254 (17%)
Query: 32 MEDAVFY--VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSN 85
ME F+ VE +N +F +K L++ ALTHSSY + +R+EF+GD+ L L +S
Sbjct: 1 MEKVNFFEEVEKTLNISFNDKELIDTALTHSSYANGKKGVKFNERMEFLGDSVLQLCISE 60
Query: 86 YVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ 145
Y+FL Y G+L+ R+ + L VA K K+++ S
Sbjct: 61 YLFLIYKSKSEGELTKKRSLIVCENSLYEVAKKWNIGKYIKMSKGE-------------- 106
Query: 146 EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIV------- 196
+ GG + +LA+ VE+I AAIY+D + K ++I F+ ++E +
Sbjct: 107 ----EITGGRERTS-ILANCVEAIIAAIYIDSGYKKTKQFIIDNFKDIIEKAIKNQIVLD 161
Query: 197 ---TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKE 253
L+E+ QQ + + + L + G RK V V + + S K+
Sbjct: 162 YKTNLQEIVQQDGDIHIEYMLIKYEGPP-------HRRKFYTKVCVANNVMGSGVGYTKK 214
Query: 254 IAKLNAAREALEKL 267
++ NAA++AL+KL
Sbjct: 215 ESEQNAAQDALKKL 228
>sp|B9E1G8|RNC_CLOK1 Ribonuclease 3 OS=Clostridium kluyveri (strain NBRC 12016) GN=rnc
PE=3 SV=1
Length = 244
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 119/254 (46%), Gaps = 44/254 (17%)
Query: 32 MEDAVFY--VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSN 85
ME F+ VE +N +F +K L++ ALTHSSY + +R+EF+GD+ L L +S
Sbjct: 1 MEKVNFFEEVEKTLNISFNDKELIDTALTHSSYANGKKGVKFNERMEFLGDSVLQLCISE 60
Query: 86 YVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ 145
Y+FL Y G+L+ R+ + L VA K K+++ S
Sbjct: 61 YLFLIYKSKSEGELTKKRSLIVCENSLYEVAKKWNIGKYIKMSKGE-------------- 106
Query: 146 EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIV------- 196
+ GG + +LA+ VE+I AAIY+D + K ++I F+ ++E +
Sbjct: 107 ----EITGGRERTS-ILANCVEAIIAAIYIDSGYKKTKQFIIDNFKDIIEKAIKNQIVLD 161
Query: 197 ---TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKE 253
L+E+ QQ + + + L + G RK V V + + S K+
Sbjct: 162 YKTNLQEIVQQDGDIHIEYMLIKYEGPP-------HRRKFYTKVCVANNVMGSGVGYTKK 214
Query: 254 IAKLNAAREALEKL 267
++ NAA++AL+KL
Sbjct: 215 ESEQNAAQDALKKL 228
>sp|Q2VF19|DCL1_CRYPA Dicer-like protein 1 OS=Cryphonectria parasitica GN=DCL-1 PE=3 SV=1
Length = 1548
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 122/294 (41%), Gaps = 47/294 (15%)
Query: 39 VENIINYNFKNKRLLEEALTHSS----YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQL 94
+ Y FK+ R+L A H S + YQRLEF+GDA +A +Y+F P
Sbjct: 1251 IHEATGYQFKHPRVLRSAFRHPSRPYVFDKVPHYQRLEFLGDALFDMACVDYLFHIAPDE 1310
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAV--- 151
P L+ + A +S + L +AV GF+KF+ H A++ ++ E+ +++ A
Sbjct: 1311 GPQWLTEHKMAMVSNQFLGCLAVSLGFHKFILHHHASIGSQIHEYVTEITEARRAAEDAA 1370
Query: 152 --------------YGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI-- 195
+ + + PK + D++E+ AI+VD +D + F + P
Sbjct: 1371 EAAGKPRSAYSRDYWVEAPQPPKCIPDVLEAYVGAIFVDSKYDYSVVQQFFHAHVLPFFA 1430
Query: 196 -VTLEELQQQPQPVTLLFKL------CQKNGKQV-------DIKHWRKNRKNIASVYVDG 241
+ + + PVT + C G D + +A + + G
Sbjct: 1431 SMRMYDTFANKHPVTFFTQYVFETFGCHAYGLHAEEMPVKDDTGLVTGKTQVVAGILLHG 1490
Query: 242 SFVASASSEQKEIAKLNAAREALEKLAQSMP---------VNCDVCEIFDDIDE 286
V A + AK+ AAR+AL+KL +SM +C E +DI E
Sbjct: 1491 QVVEGAVRDSGRYAKIAAARKALDKL-RSMTRQEFLDAYKCDCKPGEAAEDISE 1543
>sp|Q9KA05|RNC_BACHD Ribonuclease 3 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=rnc PE=3 SV=1
Length = 263
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 43/244 (17%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTSYQ------RLEFIGDAALGLALSNYVFLAYPQLDP 96
+N F NK+LL +A THSSY + Q RLEF+GDA L LA+S Y++ A+ Q+
Sbjct: 42 LNLTFANKKLLVQAFTHSSYVNEHRIQSCKDNERLEFLGDAVLELAVSQYLYKAFEQMSE 101
Query: 97 GQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSI 156
G ++ LRA+ + LA++A + F + V L K +E G
Sbjct: 102 GDMTKLRASIVCEPSLAQLAEELHFGELV------LLGKGEEMT-------------GGR 142
Query: 157 KAPKVLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQP 205
K P +LAD+ ES A+Y+D D L++ F +++ L+E Q+
Sbjct: 143 KRPALLADVFESFVGALYLDQGMDAVYLFLERTIYPKISEGAFSHMMDFKSQLQEFIQRD 202
Query: 206 QPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALE 265
+ +++ Q+ G NR+ ++ V ++ + + K+ A+ +AA++AL
Sbjct: 203 NLGHIHYEIVQERGPA-------HNREFVSEVVLNNETLGVGTGRSKKEAEQHAAQQALI 255
Query: 266 KLAQ 269
L+Q
Sbjct: 256 TLSQ 259
>sp|B6JLQ0|RNC_HELP2 Ribonuclease 3 OS=Helicobacter pylori (strain P12) GN=rnc PE=3 SV=1
Length = 239
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K L EL + P+Y++ +++GP H K+F A+ I ++ T KS+ K+AE
Sbjct: 170 KTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYIQDK---MYATAKGKSK-KEAEQ 225
Query: 354 SAASMMLRALRES 366
A L+ L+E+
Sbjct: 226 QCAYQALQKLKEA 238
>sp|Q9ZLH2|RNC_HELPJ Ribonuclease 3 OS=Helicobacter pylori (strain J99) GN=rnc PE=3 SV=1
Length = 239
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISKGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K L EL + P+Y++ +++GP H K+F A+ I ++ T KS+ K+AE
Sbjct: 170 KTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYIQDK---MYATAKGKSK-KEAEQ 225
Query: 354 SAASMMLRALRES 366
A L+ L+E+
Sbjct: 226 QCAYQALQKLKEA 238
>sp|B5Z735|RNC_HELPG Ribonuclease 3 OS=Helicobacter pylori (strain G27) GN=rnc PE=3 SV=1
Length = 239
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 120/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRAA +S HGF K + A AL D ++ VS + + +
Sbjct: 81 LSKLRAAIVSA---------HGFTKLAK--AIALQDYLR-----VSSSEEIS---KGREK 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVRKIIQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L Q+ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLQEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
AL+KL ++
Sbjct: 229 YYALQKLKEA 238
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K L EL + P+Y++ +++GP H K+F A+ I ++ T KS+ K+AE
Sbjct: 170 KTALQELTQAQFCVIPTYQLLQEKGPDHHKEFEMALYIQDK---MYATAKGKSK-KEAEQ 225
Query: 354 SAASMMLRALRES 366
A L+ L+E+
Sbjct: 226 QCAYYALQKLKEA 238
>sp|Q5L0Q3|RNC_GEOKA Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) GN=rnc
PE=3 SV=1
Length = 246
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 115/246 (46%), Gaps = 43/246 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYP 92
++N I F+N++LL +A THSSY + +RLEF+GDA L L +S Y+F +P
Sbjct: 21 LQNKIGITFRNEKLLIQAFTHSSYVNEHRRRLHEDNERLEFLGDAVLELTVSQYLFQKFP 80
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ GQL+ LRAA + L + A AL F E V +
Sbjct: 81 HMSEGQLTKLRAAIVCEPSLVKF-------------ANALS-----FGELVLLGKGEELT 122
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWM------IFRGLLEPIVTLEEL 201
GG + P +LAD+ E+ A+Y+D D L+K F +++ L+EL
Sbjct: 123 GGRTR-PALLADVFEAFIGALYLDQGMDAVIRFLEKTMFPKIDEGAFSHVMDFKSQLQEL 181
Query: 202 QQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAR 261
Q+ TL + + ++ G N++ +A V ++G + K+ A+ +AA+
Sbjct: 182 VQRDGSGTLEYAILEEKGPA-------HNKEFVARVALNGQELGIGVGRSKKEAEQHAAQ 234
Query: 262 EALEKL 267
ALE L
Sbjct: 235 MALETL 240
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K +L EL + Y I +++GP+H+K+F++ V + +G G +S+ K+AE
Sbjct: 175 KSQLQELVQRDGSGTLEYAILEEKGPAHNKEFVARVAL---NGQELGIGVGRSK-KEAEQ 230
Query: 354 SAASMMLRALR 364
AA M L LR
Sbjct: 231 HAAQMALETLR 241
>sp|Q1WUA0|RNC_LACS1 Ribonuclease 3 OS=Lactobacillus salivarius (strain UCC118) GN=rnc
PE=3 SV=1
Length = 232
Score = 85.5 bits (210), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 114/239 (47%), Gaps = 35/239 (14%)
Query: 43 INYNFKNKRLLEEALTHSSYTDSTS--------YQRLEFIGDAALGLALSNYVFLAYPQL 94
N FK+ LL+ A TH+SY + T Y+R+EF+GDA + L +S Y++ YP++
Sbjct: 13 FNITFKDVDLLDAAFTHASYVNETPERKKKLKYYERIEFLGDAVMQLCVSEYIYEHYPEM 72
Query: 95 DPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGG 154
G++S LRAA + + ++ A++ F +++R ++K G
Sbjct: 73 PEGKMSRLRAAMVRADSFSKFAIECHFNEYIRLGKG--EEK-----------------GN 113
Query: 155 SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKL 214
+ + P +L DI ES A+Y+D D ++ ++ P + L T L ++
Sbjct: 114 ARQRPSLLCDIFESFIGALYLDQGKD--EVVRFISKVIFPKLELGWFDHMMDNKTELQEV 171
Query: 215 CQKNGK------QVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267
Q+NG+ +V++ R +V V+ + + K+ A+ AA +AL+KL
Sbjct: 172 LQQNGECKIKYNEVNVTGPDNERVYTMNVVVNNEVMGEGTGRTKKAAEQMAAYQALKKL 230
>sp|P56118|RNC_HELPY Ribonuclease 3 OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=rnc PE=3 SV=2
Length = 239
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 50/250 (20%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
+E + Y+FK+KRLLE+ALTH S + + +RLEF+GDA LGL + ++ + Q D G+
Sbjct: 21 LEKALGYSFKDKRLLEQALTHKSCKLALNNERLEFLGDAVLGLVIGELLYHKFYQYDEGK 80
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
LS LRA+ +S HGF K + A AL D + S E+ + G K
Sbjct: 81 LSKLRASIVSA---------HGFTKLAK--AIALQD----YLRVSSSEE---ISNGREK- 121
Query: 159 PKVLADIVESIAAAIYVDID------------------FDLQKLWMIFRGLLEPIVTLEE 200
P +L+ E++ A +Y++ DL+ L+M ++ L+E
Sbjct: 122 PSILSSAFEALMAGVYLEAGLAKVQKIMQNLLNRAYKRLDLEHLFMDYK------TALQE 175
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q V ++L ++ G +++ ++Y+ A+A + K+ A+ A
Sbjct: 176 LTQAQFCVIPTYQLLKEKGPD-------HHKEFEMALYIQDKMYATAKGKSKKEAEQQCA 228
Query: 261 REALEKLAQS 270
+AL+KL ++
Sbjct: 229 YQALQKLKEA 238
Score = 35.0 bits (79), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K L EL + P+Y++ K++GP H K+F A+ I ++ T KS+ K+AE
Sbjct: 170 KTALQELTQAQFCVIPTYQLLKEKGPDHHKEFEMALYIQDK---MYATAKGKSK-KEAEQ 225
Query: 354 SAASMMLRALRES 366
A L+ L+E+
Sbjct: 226 QCAYQALQKLKEA 238
>sp|Q2SRZ8|RNC_MYCCT Ribonuclease 3 OS=Mycoplasma capricolum subsp. capricolum (strain
California kid / ATCC 27343 / NCTC 10154) GN=rnc PE=3
SV=1
Length = 232
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 120/248 (48%), Gaps = 46/248 (18%)
Query: 45 YNFK--NKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQ 98
YN K ++++ +EALTH+SY + SYQRLEF+GDA L + +S ++F Y +L G+
Sbjct: 10 YNIKINDQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYVSKFLFFHYSKLGEGE 69
Query: 99 LSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKA 158
L+ LR++ + E L+R+A + +R L K E
Sbjct: 70 LTRLRSSTVREESLSRIAKDINLGQLIRLGHGELMTKGYE-------------------K 110
Query: 159 PKVLADIVESIAAAIYVDIDFDLQKLWM---IFRGLLEP--IVTLEELQQQPQPVTLLFK 213
+LADI E++ AA+Y+D + D +W+ +F+ + +P I ++ + + Q +
Sbjct: 111 QSILADIFEALTAAVYIDQNEDGLLIWLEQTLFKYMKDPTFINVTKDFKSELQELL---- 166
Query: 214 LCQKNGKQVDIKHWRKNRK---------NIASVYVDGSFVASASSEQKEIAKLNAAREAL 264
++ K+ D+K+ +N + SV +DG K+ A+ NAA + L
Sbjct: 167 ---QSEKRSDLKYIIENEEFFVNENKTLYTVSVNLDGQKFGVGKGYSKQEAEQNAASDCL 223
Query: 265 EKLAQSMP 272
KL + +
Sbjct: 224 SKLKKPLT 231
>sp|Q82ZG1|RNC_ENTFA Ribonuclease 3 OS=Enterococcus faecalis (strain ATCC 700802 / V583)
GN=rnc PE=3 SV=1
Length = 230
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 116/240 (48%), Gaps = 43/240 (17%)
Query: 47 FKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYPQLDPGQLS 100
F + LLE+A THSSY + Y +RLEF+GDA L L +S Y++L +P+L G+L+
Sbjct: 17 FHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVSQYLYLKFPELPEGKLT 76
Query: 101 LLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPK 160
+RAA + + LA+ A + F ++ L K +E + GG +A
Sbjct: 77 KMRAAIVREDSLAKFAKECHFDNYI------LLGKGEEAS------------GGRTRAS- 117
Query: 161 VLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQPQPVT 209
+L D+ E+ A+Y+D K ++ F ++ L+E+ Q+ V+
Sbjct: 118 LLCDLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHEMDHKTQLQEVLQRKGDVS 177
Query: 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269
+ ++L ++ G D R VY++G + + K++A+ +AA AL+ + Q
Sbjct: 178 IEYRLIKEEGPAHD-------RTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSIPQ 230
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K +L E+ +K Y++ K+EGP+HD+ F + V + +G L G KS+ K AE
Sbjct: 163 KTQLQEVLQRKGDVSIEYRLIKEEGPAHDRTFFTEVYM---NGELIGLGQGKSK-KLAEQ 218
Query: 354 SAASMMLRAL 363
AA L+++
Sbjct: 219 DAAERALKSI 228
>sp|Q5FJJ7|RNC_LACAC Ribonuclease 3 OS=Lactobacillus acidophilus (strain ATCC 700396 /
NCK56 / N2 / NCFM) GN=rnc PE=3 SV=1
Length = 228
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 94/190 (49%), Gaps = 33/190 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYP 92
++N N F N++LLEEA THSSY++ Y++LEF+GDA L LA+SNY++ YP
Sbjct: 10 LKNEYNIEFNNEKLLEEAFTHSSYSNEHPDDGIRDYEKLEFLGDAVLELAVSNYLYRHYP 69
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+L+ G+L+ LR+ + TE + A++ GF K + N
Sbjct: 70 KLNEGELTRLRSNIVRTEGFSEFAIECGFQKEIHLG-------------------NGEEK 110
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGL---LEPIVTLEELQQQPQPVT 209
G+ +L D+ E+ A+++D Q + + R L + P++ E T
Sbjct: 111 AGARNRKTLLEDVFEAFNGALFLD-----QGMPAVERFLHLTVYPLIAKGEFDDSRDYKT 165
Query: 210 LLFKLCQKNG 219
L +L Q+NG
Sbjct: 166 DLQELLQQNG 175
>sp|A0LGM1|RNC_SYNFM Ribonuclease 3 OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
MPOB) GN=rnc PE=3 SV=1
Length = 242
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 130/257 (50%), Gaps = 48/257 (18%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYT------DSTSYQRLEFIGDAALGLALSNYV 87
D + ++N++ Y F ++ LL AL H SY D + LEF+GDA LGLA+S+++
Sbjct: 5 DGLEALQNLLGYRFGDEGLLHRALVHRSYLHENPHLDEKDNETLEFLGDAVLGLAISHFL 64
Query: 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147
+P + G+LS LR+A ++ +L R+AV+ +++ L K +E
Sbjct: 65 LEQFPDYNEGELSRLRSAIVNERELTRIAVELNLGEYL------LLGKGEEMT------- 111
Query: 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWMIF------RGLLEPI- 195
GG KA +LAD +E++ A+IY+D D ++KL+ ++ +L+ +
Sbjct: 112 -----GGRRKAS-LLADSLEALLASIYLDGGLDAVLGVIKKLFDVYLRFEKREHVLKALD 165
Query: 196 ----VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQ 251
L+EL Q +T ++ L ++ G D K + N V ++G +A S +
Sbjct: 166 KDYKTQLQELTQARYKLTPVYVLDREEGPDHD-KTFHMN------VVLEGQVLAGGSGKS 218
Query: 252 KEIAKLNAAREALEKLA 268
K+ A+ AA +AL+ +A
Sbjct: 219 KKDAQQAAAEKALQIIA 235
Score = 38.5 bits (88), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K +L EL + P Y ++++EGP HDK F V + +G + G KS+ KDA+
Sbjct: 169 KTQLQELTQARYKLTPVYVLDREEGPDHDKTFHMNVVL---EGQVLAGGSGKSK-KDAQQ 224
Query: 354 SAASMMLR 361
+AA L+
Sbjct: 225 AAAEKALQ 232
>sp|Q3ZXY9|RNC_DEHSC Ribonuclease 3 OS=Dehalococcoides sp. (strain CBDB1) GN=rnc PE=3
SV=1
Length = 237
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 118/251 (47%), Gaps = 44/251 (17%)
Query: 39 VENIINYNFKNKRLLEEALTHSSYTD------STSYQRLEFIGDAALGLALSNYVFLAYP 92
+EN + F+ LLE+AL H+S+ + S S +R+EF+GDA LG+ ++ ++ +P
Sbjct: 7 LENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRLYHDFP 66
Query: 93 QLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVY 152
+ G L+ R+ + E L RVA+ K++ E VS+
Sbjct: 67 DIQEGDLTRFRSLLVRRESLVRVALGINLGKYLYLGR----------GEDVSK------- 109
Query: 153 GGSIKAPKVLADIVESIAAAIYVDIDFDLQK--LWMIFRGLLEPIVT----------LEE 200
G K P LA E++ AAIY+D D+ + ++ +F+ +E + T L+E
Sbjct: 110 -GRFK-PANLAGAFEAVLAAIYIDKGMDVTREVIFRLFKTEMERVQTLSSNIDYKSRLQE 167
Query: 201 LQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAA 260
L Q +T +++ +G + NR IA VY + A S K+ A+ NAA
Sbjct: 168 LIQAQLQLTPRYRITNFSGPE-------HNRLFIAEVYAEDRVFAEGSGRSKKEAETNAA 220
Query: 261 REALEKLAQSM 271
+ AL++ S
Sbjct: 221 KVALQQFENSF 231
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 294 KQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353
K +L EL + P Y+I GP H++ F++ V + +F G +S+ K+AE
Sbjct: 162 KSRLQELIQAQLQLTPRYRITNFSGPEHNRLFIAEV---YAEDRVFAEGSGRSK-KEAET 217
Query: 354 SAASMMLRALRES 366
+AA + L+ S
Sbjct: 218 NAAKVALQQFENS 230
>sp|A0RRM7|RNC_CAMFF Ribonuclease 3 OS=Campylobacter fetus subsp. fetus (strain 82-40)
GN=rnc PE=3 SV=1
Length = 223
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 97/200 (48%), Gaps = 35/200 (17%)
Query: 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQ 93
D + +E + Y FKNK LL+EALTH S S + +RLEF+GDA L L + Y+F +
Sbjct: 2 DKLNRLEEHLGYKFKNKTLLKEALTHKSMKSSVNNERLEFLGDAVLDLIVGEYLFFKFKD 61
Query: 94 LDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG 153
D G LS LRAA ++ + A ++ + F+ SAA EDN
Sbjct: 62 TDEGNLSKLRAALVNEKSFASISSQIRLGDFLYLSAA---------------EDNN---N 103
Query: 154 GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP--------------IVTLE 199
G K P +++D +E++ AIY ++ L+ + IF LLE TL+
Sbjct: 104 GRNK-PSLVSDALEALMGAIY--LESGLEAVKKIFINLLESQYNNIDLQSLGKDYKTTLQ 160
Query: 200 ELQQQPQPVTLLFKLCQKNG 219
E+ Q VT ++L +G
Sbjct: 161 EITQARFGVTPRYELVSSSG 180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,741,177
Number of Sequences: 539616
Number of extensions: 5253824
Number of successful extensions: 18261
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 16345
Number of HSP's gapped (non-prelim): 1119
length of query: 370
length of database: 191,569,459
effective HSP length: 119
effective length of query: 251
effective length of database: 127,355,155
effective search space: 31966143905
effective search space used: 31966143905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)