Query 017515
Match_columns 370
No_of_seqs 255 out of 2022
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 09:15:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0571 Rnc dsRNA-specific rib 100.0 3.3E-52 7.2E-57 373.3 22.8 223 34-366 6-232 (235)
2 PRK12371 ribonuclease III; Rev 100.0 4.3E-51 9.3E-56 370.1 24.2 220 34-365 10-231 (235)
3 PRK14718 ribonuclease III; Pro 100.0 6.3E-51 1.4E-55 386.0 23.3 219 36-365 3-222 (467)
4 PRK12372 ribonuclease III; Rev 100.0 2.7E-50 6E-55 380.3 23.2 219 36-365 3-222 (413)
5 PRK00102 rnc ribonuclease III; 100.0 2.6E-46 5.7E-51 340.7 23.7 222 34-365 3-228 (229)
6 TIGR02191 RNaseIII ribonucleas 100.0 6.3E-45 1.4E-49 329.7 22.9 215 39-363 1-220 (220)
7 KOG1817 Ribonuclease [RNA proc 100.0 1.8E-36 3.8E-41 282.1 18.6 213 36-270 275-504 (533)
8 PF14622 Ribonucleas_3_3: Ribo 100.0 1.5E-29 3.2E-34 209.3 6.2 124 49-194 1-126 (128)
9 smart00535 RIBOc Ribonuclease 99.9 6.6E-27 1.4E-31 194.0 12.3 126 51-197 1-127 (129)
10 cd00593 RIBOc RIBOc. Ribonucle 99.9 1.3E-26 2.9E-31 193.1 12.4 127 51-198 1-130 (133)
11 KOG3732 Staufen and related do 99.9 1.5E-25 3.3E-30 205.1 17.1 154 205-364 38-210 (339)
12 KOG3769 Ribonuclease III domai 99.9 4.5E-24 9.7E-29 191.3 15.6 232 18-271 47-305 (333)
13 PF00636 Ribonuclease_3: Ribon 99.9 3.3E-24 7.2E-29 173.9 6.3 110 69-178 1-114 (114)
14 KOG1817 Ribonuclease [RNA proc 99.9 1.5E-21 3.3E-26 182.7 18.6 132 33-183 40-228 (533)
15 PHA02701 ORF020 dsRNA-binding 99.7 3.6E-16 7.7E-21 132.8 9.0 76 289-369 106-181 (183)
16 cd00048 DSRM Double-stranded R 99.6 1.4E-15 3.1E-20 111.0 8.9 68 292-363 1-68 (68)
17 KOG0701 dsRNA-specific nucleas 99.6 4.4E-16 9.6E-21 168.7 6.2 223 35-271 1370-1600(1606)
18 smart00358 DSRM Double-strande 99.6 4.4E-15 9.6E-20 108.2 8.4 66 293-363 1-66 (67)
19 PHA03103 double-strand RNA-bin 99.6 6.6E-15 1.4E-19 126.1 9.0 72 289-366 107-178 (183)
20 KOG0701 dsRNA-specific nucleas 99.6 2.1E-14 4.6E-19 155.9 12.3 160 34-194 979-1182(1606)
21 PF00035 dsrm: Double-stranded 99.5 5.5E-14 1.2E-18 102.5 8.3 66 293-363 1-67 (67)
22 KOG3732 Staufen and related do 99.5 4.5E-14 9.7E-19 130.0 8.5 109 249-369 2-110 (339)
23 PF14709 DND1_DSRM: double str 99.5 6.8E-14 1.5E-18 105.3 7.9 74 291-364 1-80 (80)
24 PHA03103 double-strand RNA-bin 99.4 2.3E-12 4.9E-17 110.5 10.9 85 186-270 88-178 (183)
25 PHA02701 ORF020 dsRNA-binding 99.4 1.4E-12 3E-17 111.0 9.5 67 204-270 107-178 (183)
26 smart00358 DSRM Double-strande 99.4 3.3E-12 7.1E-17 92.9 8.7 61 207-267 1-66 (67)
27 PF00035 dsrm: Double-stranded 99.4 6.9E-12 1.5E-16 91.3 9.9 61 207-267 1-67 (67)
28 cd00048 DSRM Double-stranded R 99.3 8.6E-12 1.9E-16 90.8 9.2 62 206-267 1-68 (68)
29 PRK12371 ribonuclease III; Rev 99.2 1.3E-10 2.8E-15 105.7 9.6 64 206-269 162-231 (235)
30 KOG4334 Uncharacterized conser 99.1 8.4E-10 1.8E-14 105.6 10.0 151 206-363 376-556 (650)
31 PRK14718 ribonuclease III; Pro 99.0 1.2E-09 2.6E-14 105.2 10.8 65 206-270 152-223 (467)
32 COG0571 Rnc dsRNA-specific rib 99.0 1.2E-09 2.6E-14 98.6 9.3 65 206-270 162-232 (235)
33 PRK12372 ribonuclease III; Rev 99.0 2.3E-09 5E-14 102.7 11.0 64 206-269 152-222 (413)
34 KOG2777 tRNA-specific adenosin 99.0 1.2E-09 2.6E-14 107.8 8.6 121 229-365 22-154 (542)
35 PRK00102 rnc ribonuclease III; 99.0 2.8E-09 6E-14 97.1 9.5 64 206-269 159-228 (229)
36 TIGR02191 RNaseIII ribonucleas 98.9 5.8E-09 1.2E-13 94.3 10.6 62 206-267 153-220 (220)
37 PF14709 DND1_DSRM: double str 98.6 1.7E-07 3.8E-12 70.4 7.1 64 205-268 1-80 (80)
38 KOG3769 Ribonuclease III domai 98.1 9.7E-06 2.1E-10 74.0 7.3 72 289-364 230-302 (333)
39 COG1939 Ribonuclease III famil 97.9 0.00015 3.1E-09 58.3 10.5 103 67-179 14-116 (132)
40 KOG0921 Dosage compensation co 97.7 5.1E-05 1.1E-09 78.6 6.1 158 206-366 2-241 (1282)
41 PF03368 Dicer_dimer: Dicer di 97.5 0.00038 8.2E-09 53.6 7.2 69 294-369 2-77 (90)
42 KOG2777 tRNA-specific adenosin 97.4 0.00033 7.1E-09 69.9 7.0 65 204-273 89-158 (542)
43 KOG4334 Uncharacterized conser 97.4 0.00014 3.1E-09 70.4 3.6 70 289-364 373-442 (650)
44 PF03368 Dicer_dimer: Dicer di 96.2 0.029 6.4E-07 43.1 7.9 64 208-271 2-75 (90)
45 KOG3792 Transcription factor N 96.2 0.0094 2E-07 60.7 6.1 124 229-363 404-569 (816)
46 KOG0921 Dosage compensation co 95.8 0.016 3.5E-07 60.8 5.9 71 292-367 2-72 (1282)
47 PF14954 LIX1: Limb expression 93.7 0.15 3.2E-06 44.9 5.4 70 289-361 19-93 (252)
48 KOG2334 tRNA-dihydrouridine sy 92.7 0.041 8.9E-07 53.2 0.7 68 290-364 374-441 (477)
49 PF14954 LIX1: Limb expression 92.0 0.52 1.1E-05 41.6 6.5 65 203-267 19-95 (252)
50 PF11469 Ribonucleas_3_2: Ribo 87.3 5.9 0.00013 30.9 8.2 87 70-194 2-90 (120)
51 KOG2334 tRNA-dihydrouridine sy 79.8 0.67 1.5E-05 45.1 0.5 67 203-269 373-442 (477)
52 KOG3792 Transcription factor N 67.4 2.9 6.2E-05 43.4 1.5 65 292-363 371-441 (816)
53 PF12174 RST: RCD1-SRO-TAF4 (R 59.2 28 0.0006 25.3 5.0 65 7-86 2-67 (70)
54 PF00333 Ribosomal_S5: Ribosom 56.3 29 0.00063 24.9 4.6 38 232-269 23-64 (67)
55 PF01418 HTH_6: Helix-turn-hel 43.7 21 0.00046 26.1 2.4 45 81-125 19-64 (77)
56 PF02169 LPP20: LPP20 lipoprot 38.9 49 0.0011 24.7 3.9 28 242-269 13-40 (92)
57 PF02169 LPP20: LPP20 lipoprot 38.7 46 0.001 24.9 3.7 28 336-364 12-39 (92)
58 PF06754 PhnG: Phosphonate met 37.7 1.9E+02 0.0041 24.2 7.4 35 233-267 65-101 (146)
59 CHL00138 rps5 ribosomal protei 35.1 1.2E+02 0.0027 25.3 5.9 39 232-270 45-87 (143)
60 TIGR01021 rpsE_bact ribosomal 34.4 1.1E+02 0.0025 25.8 5.7 39 232-270 23-65 (154)
61 KOG3302 TATA-box binding prote 33.2 1.1E+02 0.0024 26.9 5.4 41 322-368 66-106 (200)
62 PF04694 Corona_3: Coronavirus 31.0 1.1E+02 0.0023 20.7 3.8 32 324-356 22-54 (60)
63 PF02482 Ribosomal_S30AE: Sigm 29.6 1.8E+02 0.0038 21.8 5.7 46 319-365 44-89 (97)
64 PRK00550 rpsE 30S ribosomal pr 28.9 1.6E+02 0.0034 25.4 5.7 40 232-271 34-77 (168)
65 PF04098 Rad52_Rad22: Rad52/22 27.9 3.2E+02 0.0069 22.9 7.4 21 207-227 38-58 (154)
66 PF04098 Rad52_Rad22: Rad52/22 26.4 1.3E+02 0.0028 25.3 4.7 20 289-308 34-53 (154)
67 PF02624 YcaO: YcaO-like famil 26.1 5.5E+02 0.012 24.0 10.2 52 218-269 171-230 (332)
68 TIGR00741 yfiA ribosomal subun 26.0 2.7E+02 0.0058 20.8 6.1 41 324-365 47-87 (95)
69 COG3624 PhnG Uncharacterized e 25.8 3.8E+02 0.0083 22.3 7.0 33 234-266 69-105 (151)
70 PF08383 Maf_N: Maf N-terminal 25.3 37 0.0008 20.9 0.8 10 163-172 26-35 (35)
71 cd04516 TBP_eukaryotes eukaryo 24.6 2.4E+02 0.0052 24.3 6.1 42 322-369 45-86 (174)
72 PRK14741 spoVM stage V sporula 24.0 78 0.0017 17.8 1.9 18 156-173 6-23 (26)
73 PF14657 Integrase_AP2: AP2-li 23.7 2.1E+02 0.0046 18.4 5.8 20 344-365 24-43 (46)
74 PF13936 HTH_38: Helix-turn-he 22.7 99 0.0021 19.9 2.6 34 91-124 2-35 (44)
75 TIGR02193 heptsyl_trn_I lipopo 20.6 86 0.0019 29.4 2.9 30 70-99 6-35 (319)
76 PRK04044 rps5p 30S ribosomal p 20.5 2.5E+02 0.0054 25.2 5.4 39 232-270 71-113 (211)
No 1
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=100.00 E-value=3.3e-52 Score=373.30 Aligned_cols=223 Identities=36% Similarity=0.582 Sum_probs=200.8
Q ss_pred HHHHHHHHHcCcccCChhHHHHHhcCCCCCC----CCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcCh
Q 017515 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIST 109 (370)
Q Consensus 34 ~~~~~le~~lgy~f~~~~Ll~~AlTh~s~~~----~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn 109 (370)
..+..|++.+||.|+|++||.+||||+|+.+ ..||||||||||+||+++|++|||++||+.++|.||.+|+.+||+
T Consensus 6 ~~~~~l~~~lg~~f~~~~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV~~ 85 (235)
T COG0571 6 KKLEALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALVSE 85 (235)
T ss_pred HHHHHHHHHhCCCcCCHHHHHHHhcCcchhccccCCcchHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999986 468999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHH
Q 017515 110 EKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFR 189 (370)
Q Consensus 110 ~~La~~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~ 189 (370)
.+|+.+|..+||++||+.+..+. ..++ ...+++++|+|||+|||||+|+|++.++ +|+.
T Consensus 86 ~~La~ia~~l~l~~~l~lg~ge~------------------~~gg-~~~~silaD~~EAligAiylD~g~~~~~--~~i~ 144 (235)
T COG0571 86 ESLAEIARELGLGDYLRLGKGEE------------------KSGG-RRRESILADAFEALIGAIYLDSGLEAAR--KFIL 144 (235)
T ss_pred HHHHHHHHHhCccchhhccCChh------------------hcCC-CCchhHHHHHHHHHHHHHHHhCChHHHH--HHHH
Confidence 99999999999999999987643 3445 6689999999999999999999966554 7899
Q ss_pred HhhhhhhhhhhhccCCchHHHHHHHHHhcCCceeEEEeecCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515 190 GLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 190 ~ll~~~i~~~~~~~~~~p~~~L~e~~~k~~~~~~y~~~~~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 269 (370)
+++.+.+...+..
T Consensus 145 ~l~~~~~~~~~~~------------------------------------------------------------------- 157 (235)
T COG0571 145 KLFLPRLEEIDAG------------------------------------------------------------------- 157 (235)
T ss_pred HHHHHHHhhcccc-------------------------------------------------------------------
Confidence 9998877532111
Q ss_pred cCCCcccccccccCCchhhhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchh
Q 017515 270 SMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVK 349 (370)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk 349 (370)
....|||+.||||||+++...|.|.++.++||+|++.|+++|.| ++..+++|.|+|| |
T Consensus 158 ------------------~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v---~~~~~g~G~G~sk-k 215 (235)
T COG0571 158 ------------------DQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAV---GGKELGTGKGRSK-K 215 (235)
T ss_pred ------------------ccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEE---CCeeEEEecccCH-H
Confidence 12368999999999999999999999999999999999999999 6899999999999 9
Q ss_pred HHHHHHHHHHHHHHhhc
Q 017515 350 DAENSAASMMLRALRES 366 (370)
Q Consensus 350 ~A~~~AA~~~l~~l~~~ 366 (370)
+|||.||+.||..|...
T Consensus 216 ~AEq~AA~~al~~l~~~ 232 (235)
T COG0571 216 EAEQAAAEQALKKLGVK 232 (235)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999998753
No 2
>PRK12371 ribonuclease III; Reviewed
Probab=100.00 E-value=4.3e-51 Score=370.13 Aligned_cols=220 Identities=30% Similarity=0.446 Sum_probs=193.2
Q ss_pred HHHHHHHHHcCcccCChhHHHHHhcCCCCCC--CCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHH
Q 017515 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTD--STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111 (370)
Q Consensus 34 ~~~~~le~~lgy~f~~~~Ll~~AlTh~s~~~--~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~ 111 (370)
+.+..||++|||+|+|++||.+||||+|+.. ..||||||||||+||+++|+++||.+||+.++|.|+.+|+.+|||.+
T Consensus 10 ~~~~~le~~lgy~F~~~~Ll~~AlTH~S~~~~~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n~~ 89 (235)
T PRK12371 10 ATASILEERTGHRFANKERLERALTHSSARASKQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAET 89 (235)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHcCcCcccCCccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhChHH
Confidence 4678999999999999999999999999875 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHh
Q 017515 112 LARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGL 191 (370)
Q Consensus 112 La~~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~~l 191 (370)
|+.+|.++||++||+.++... ..++ ...++++||+|||+|||||+|+|++.+. +|+..+
T Consensus 90 La~ia~~lgL~~~i~~~~~~~------------------~~~~-~~~~~ilad~~EAliGAiylD~G~~~a~--~~i~~~ 148 (235)
T PRK12371 90 CAAIADEIGLHDLIRTGSDVK------------------KLTG-KRLLNVRADVVEALIAAIYLDGGLEAAR--PFIQRY 148 (235)
T ss_pred HHHHHHHCCcHHHhccCcchh------------------hcCC-cccchHHHHHHHHHHHHHHHcCCHHHHH--HHHHHH
Confidence 999999999999999875321 1122 3457899999999999999999987655 778888
Q ss_pred hhhhhhhhhhccCCchHHHHHHHHHhcCCceeEEEeecCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcC
Q 017515 192 LEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSM 271 (370)
Q Consensus 192 l~~~i~~~~~~~~~~p~~~L~e~~~k~~~~~~y~~~~~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 271 (370)
|.+.+...+
T Consensus 149 ~~~~~~~~~----------------------------------------------------------------------- 157 (235)
T PRK12371 149 WQKRALETD----------------------------------------------------------------------- 157 (235)
T ss_pred HHHHHhccc-----------------------------------------------------------------------
Confidence 766543110
Q ss_pred CCcccccccccCCchhhhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHH
Q 017515 272 PVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDA 351 (370)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A 351 (370)
....|||+.||||||+.+...|.|.+++++||+|.+.|+|+|.+ +|...++|.|+|| |+|
T Consensus 158 ----------------~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v---~~~~~~~g~G~sK-K~A 217 (235)
T PRK12371 158 ----------------AARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEV---KGFAPETGEGRSK-RAA 217 (235)
T ss_pred ----------------cccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEE---CCEEEEEeeeCCH-HHH
Confidence 02348999999999999888899999988999999999999999 6888999999999 999
Q ss_pred HHHHHHHHHHHHhh
Q 017515 352 ENSAASMMLRALRE 365 (370)
Q Consensus 352 ~~~AA~~~l~~l~~ 365 (370)
||.||+.||+.|+.
T Consensus 218 e~~AA~~al~~~~~ 231 (235)
T PRK12371 218 EQVAAEKMLEREGV 231 (235)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999999874
No 3
>PRK14718 ribonuclease III; Provisional
Probab=100.00 E-value=6.3e-51 Score=386.03 Aligned_cols=219 Identities=29% Similarity=0.455 Sum_probs=193.2
Q ss_pred HHHHHHHcCcccCChhHHHHHhcCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHHHH
Q 017515 36 VFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARV 115 (370)
Q Consensus 36 ~~~le~~lgy~f~~~~Ll~~AlTh~s~~~~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La~~ 115 (370)
+..||++|||+|+|++||.+||||+||.. .+|||||||||+||+++|++|||.+||++++|.|+.+|+.+|||.+|+.+
T Consensus 3 l~~LEkrLGY~Fkn~~LL~eALTH~Sys~-e~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetLA~I 81 (467)
T PRK14718 3 LSQLESRLRYEFRNAELLRQALTHRSHSA-THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEI 81 (467)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhccCcCc-ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHHHHH
Confidence 46799999999999999999999999975 68999999999999999999999999999999999999999999999999
Q ss_pred HHHcChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhhhh
Q 017515 116 AVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195 (370)
Q Consensus 116 a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~~ll~~~ 195 (370)
|..+||++||+.+..+. ..++ ...+++++|+|||||||||+|+|++ .++.|+..+|.+.
T Consensus 82 Ar~LGL~d~Lrlg~gE~------------------~sgG-~~~~sILADvFEALIGAIYLDsG~e--~a~~fI~~ll~p~ 140 (467)
T PRK14718 82 AQALNISDGLRLGEGEL------------------RSGG-FRRPSILADAFEAIIGAVFLDGGFE--AAQGVIKRLYVPI 140 (467)
T ss_pred HHHcCchHHHhhCCccc------------------ccCC-CCChhHHHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHH
Confidence 99999999999875431 2233 4578999999999999999999976 4558899999887
Q ss_pred hhhhhhccCCchHHHHHHHHHhcCCceeEEEeecCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCCCcc
Q 017515 196 VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNC 275 (370)
Q Consensus 196 i~~~~~~~~~~p~~~L~e~~~k~~~~~~y~~~~~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~ 275 (370)
++..+..
T Consensus 141 i~~~d~~------------------------------------------------------------------------- 147 (467)
T PRK14718 141 LDHIDPR------------------------------------------------------------------------- 147 (467)
T ss_pred Hhhhccc-------------------------------------------------------------------------
Confidence 6431110
Q ss_pred cccccccCCchhhhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCC-eEEEeecCCCchhHHHHH
Q 017515 276 DVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDG-VLFITGDEKSRVKDAENS 354 (370)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~-~~~~~g~g~skkk~A~~~ 354 (370)
....|||+.||||||++++..|+|.++.++||+|.+.|+++|.| ++ ..++.|.|.|| |+|||.
T Consensus 148 ------------~~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v---~g~~~~G~G~G~SK-KeAEQ~ 211 (467)
T PRK14718 148 ------------TLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTV---PKLDIKVSGSGASR-RAAEQA 211 (467)
T ss_pred ------------ccccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEE---CCeeeEEEEEcCCH-HHHHHH
Confidence 12358999999999999999999999999999999999999999 45 46689999999 999999
Q ss_pred HHHHHHHHHhh
Q 017515 355 AASMMLRALRE 365 (370)
Q Consensus 355 AA~~~l~~l~~ 365 (370)
||+.||+.|..
T Consensus 212 AAk~AL~kL~~ 222 (467)
T PRK14718 212 AAKKALDEVTA 222 (467)
T ss_pred HHHHHHHHhcc
Confidence 99999999973
No 4
>PRK12372 ribonuclease III; Reviewed
Probab=100.00 E-value=2.7e-50 Score=380.26 Aligned_cols=219 Identities=29% Similarity=0.451 Sum_probs=192.5
Q ss_pred HHHHHHHcCcccCChhHHHHHhcCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHHHH
Q 017515 36 VFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARV 115 (370)
Q Consensus 36 ~~~le~~lgy~f~~~~Ll~~AlTh~s~~~~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La~~ 115 (370)
+..||++|||+|+|++||.+||||+|+.. .+|||||||||+||+++|++|||++||++++|.|+.+|+.+|||.+|+.+
T Consensus 3 l~~LEk~LGY~Fkn~~LL~eALTH~Sy~~-~~NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~tLA~I 81 (413)
T PRK12372 3 LSQLESRLRYEFRNAELLRQALTHRSHSA-THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEI 81 (413)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhcccccc-ccHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHHHHHH
Confidence 45799999999999999999999999875 68999999999999999999999999999999999999999999999999
Q ss_pred HHHcChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhhhh
Q 017515 116 AVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195 (370)
Q Consensus 116 a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~~ll~~~ 195 (370)
|..+||.+||+.+..+. ..++ ...+++++|+|||||||||+|+|++. ++.|+..+|.+.
T Consensus 82 A~~LgL~~~Lrlg~ge~------------------~sgg-~~~~kILADvfEALIGAIYLDsG~e~--a~~fV~~ll~p~ 140 (413)
T PRK12372 82 AQALNISEGLRLGEGEL------------------RSGG-FRRPSILADAFEAIIGAVFLDGGFEA--AQGVIKRLYVPI 140 (413)
T ss_pred HHHcCchHhhhcCcchh------------------hcCC-CCCccHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHH
Confidence 99999999999875431 1222 45789999999999999999999764 558899998887
Q ss_pred hhhhhhccCCchHHHHHHHHHhcCCceeEEEeecCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCCCcc
Q 017515 196 VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNC 275 (370)
Q Consensus 196 i~~~~~~~~~~p~~~L~e~~~k~~~~~~y~~~~~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~ 275 (370)
++..+..
T Consensus 141 l~~~~~~------------------------------------------------------------------------- 147 (413)
T PRK12372 141 LDHIDPR------------------------------------------------------------------------- 147 (413)
T ss_pred Hhhcccc-------------------------------------------------------------------------
Confidence 6431100
Q ss_pred cccccccCCchhhhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCC-eEEEeecCCCchhHHHHH
Q 017515 276 DVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDG-VLFITGDEKSRVKDAENS 354 (370)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~-~~~~~g~g~skkk~A~~~ 354 (370)
....|||+.||||||++++..|+|.++.+.||+|.+.|+|+|.+ ++ ...+.|.|.|| |+|||.
T Consensus 148 ------------~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v---~g~~~~g~G~G~SK-KeAEQ~ 211 (413)
T PRK12372 148 ------------TLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTV---PKLDVKVSGSGASR-RAAEQA 211 (413)
T ss_pred ------------cccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEE---CCeEEEEEEEeCCH-HHHHHH
Confidence 12348999999999999999999999999999999999999999 45 56689999999 999999
Q ss_pred HHHHHHHHHhh
Q 017515 355 AASMMLRALRE 365 (370)
Q Consensus 355 AA~~~l~~l~~ 365 (370)
||+.||+.|..
T Consensus 212 AAr~AL~kL~~ 222 (413)
T PRK12372 212 AAKKALDEVMA 222 (413)
T ss_pred HHHHHHHHHhc
Confidence 99999999973
No 5
>PRK00102 rnc ribonuclease III; Reviewed
Probab=100.00 E-value=2.6e-46 Score=340.71 Aligned_cols=222 Identities=36% Similarity=0.582 Sum_probs=195.1
Q ss_pred HHHHHHHHHcCcccCChhHHHHHhcCCCCCC----CCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcCh
Q 017515 34 DAVFYVENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANIST 109 (370)
Q Consensus 34 ~~~~~le~~lgy~f~~~~Ll~~AlTh~s~~~----~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn 109 (370)
+.+..||++|||+|+|++|+.+||||||+.. ..+|||||||||+||++++++|||.+||+.++|.|+.+|+.+|||
T Consensus 3 ~~~~~l~~~lg~~f~~~~ll~~Alth~S~~~~~~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lvsn 82 (229)
T PRK00102 3 KDLEELQKKLGYTFKDPELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALVRE 82 (229)
T ss_pred hhHHHHHHHhCCCCCCHHHHHHHhCccchhccCCCcccchhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCH
Confidence 4678899999999999999999999999953 679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHH
Q 017515 110 EKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFR 189 (370)
Q Consensus 110 ~~La~~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~ 189 (370)
.+|+.+|.++||++||+.++... ..++ ...+++++|+|||+|||||+|+|++ .+++|+.
T Consensus 83 ~~la~~a~~lgl~~~i~~~~~~~------------------~~~~-~~~~k~~ad~~EA~iGAiyld~g~~--~~~~~i~ 141 (229)
T PRK00102 83 ESLAEIARELGLGEYLLLGKGEE------------------KSGG-RRRPSILADAFEALIGAIYLDQGLE--AARKFIL 141 (229)
T ss_pred HHHHHHHHHCCcHHHHccCcHHH------------------HcCC-CCCccHHHHHHHHHHHHHHHhCCHH--HHHHHHH
Confidence 99999999999999999875321 1111 3467999999999999999999975 4558899
Q ss_pred HhhhhhhhhhhhccCCchHHHHHHHHHhcCCceeEEEeecCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515 190 GLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 190 ~ll~~~i~~~~~~~~~~p~~~L~e~~~k~~~~~~y~~~~~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 269 (370)
.++.|.+...+..
T Consensus 142 ~~~~~~l~~~~~~------------------------------------------------------------------- 154 (229)
T PRK00102 142 RLFEPRIEEIDLG------------------------------------------------------------------- 154 (229)
T ss_pred HHHHHHHHhhccc-------------------------------------------------------------------
Confidence 8888876542210
Q ss_pred cCCCcccccccccCCchhhhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchh
Q 017515 270 SMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVK 349 (370)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk 349 (370)
....|||+.|+||||++++..|.|.++.++|+.|.+.|+|+|.+ ++..+++|.|.|| |
T Consensus 155 ------------------~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i---~~~~~~~g~g~sk-k 212 (229)
T PRK00102 155 ------------------DLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTV---NGKELGEGTGSSK-K 212 (229)
T ss_pred ------------------cccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEE---CCEEEEEeeeCCH-H
Confidence 13458999999999999999999999888899999999999999 6899999999999 9
Q ss_pred HHHHHHHHHHHHHHhh
Q 017515 350 DAENSAASMMLRALRE 365 (370)
Q Consensus 350 ~A~~~AA~~~l~~l~~ 365 (370)
+||+.||+.||+.|+.
T Consensus 213 ~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 213 EAEQAAAKQALKKLKE 228 (229)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999864
No 6
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=100.00 E-value=6.3e-45 Score=329.69 Aligned_cols=215 Identities=40% Similarity=0.621 Sum_probs=188.4
Q ss_pred HHHHcCcccCChhHHHHHhcCCCCCC-----CCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHH
Q 017515 39 VENIINYNFKNKRLLEEALTHSSYTD-----STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLA 113 (370)
Q Consensus 39 le~~lgy~f~~~~Ll~~AlTh~s~~~-----~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La 113 (370)
||++|||+|+|++|+.+||||||+.. ..+|||||||||+||++++++|++.+||+.++|.|+.+|+.++||.+|+
T Consensus 1 ~e~~lgy~F~~~~ll~~Alth~S~~~~~~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvsn~~la 80 (220)
T TIGR02191 1 LEKRLGYKFKNKELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSEESLA 80 (220)
T ss_pred ChHHhCCCcCCHHHHHHHhcCcccccccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCHHHHH
Confidence 58999999999999999999999864 3599999999999999999999999999999999999999999999999
Q ss_pred HHHHHcChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhh
Q 017515 114 RVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLE 193 (370)
Q Consensus 114 ~~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~~ll~ 193 (370)
.+|.++||+++|++.+... ...+ ...+++++|+|||+|||||+|+|++ .+++|+..++.
T Consensus 81 ~~a~~~gl~~~i~~~~~~~------------------~~~~-~~~~k~~ad~~eAliGAiyld~g~~--~~~~~i~~~~~ 139 (220)
T TIGR02191 81 EVARELGLGKFLLLGKGEE------------------KSGG-RRRESILADAFEALIGAIYLDSGLE--AARKFILKLLI 139 (220)
T ss_pred HHHHHCCcHHHhccCchHh------------------hcCC-cccchHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHH
Confidence 9999999999999875421 1111 3468999999999999999999955 45588999988
Q ss_pred hhhhhhhhccCCchHHHHHHHHHhcCCceeEEEeecCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCCC
Q 017515 194 PIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPV 273 (370)
Q Consensus 194 ~~i~~~~~~~~~~p~~~L~e~~~k~~~~~~y~~~~~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~ 273 (370)
|.+......
T Consensus 140 ~~~~~~~~~----------------------------------------------------------------------- 148 (220)
T TIGR02191 140 PRIDAIEKE----------------------------------------------------------------------- 148 (220)
T ss_pred HHHHhhhcc-----------------------------------------------------------------------
Confidence 877532110
Q ss_pred cccccccccCCchhhhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHH
Q 017515 274 NCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353 (370)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~ 353 (370)
....|||+.|+|+||++++..|.|.++.+.|++|.+.|+|+|.+ +|..+++|.|.|| |+||+
T Consensus 149 --------------~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~---~~~~~~~g~g~sk-k~A~~ 210 (220)
T TIGR02191 149 --------------ETLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSV---NGEPYGEGKGKSK-KEAEQ 210 (220)
T ss_pred --------------cccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEE---CCEEEEEeeeCCH-HHHHH
Confidence 02358999999999999988899999888899999999999999 6899999999999 99999
Q ss_pred HHHHHHHHHH
Q 017515 354 SAASMMLRAL 363 (370)
Q Consensus 354 ~AA~~~l~~l 363 (370)
.||+.||+.|
T Consensus 211 ~AA~~Al~~l 220 (220)
T TIGR02191 211 NAAKAALEKL 220 (220)
T ss_pred HHHHHHHHhC
Confidence 9999999875
No 7
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=100.00 E-value=1.8e-36 Score=282.13 Aligned_cols=213 Identities=29% Similarity=0.354 Sum_probs=185.1
Q ss_pred HHHHHHHcCcccCChhHHHHHhcCCCCCC----CCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHH
Q 017515 36 VFYVENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111 (370)
Q Consensus 36 ~~~le~~lgy~f~~~~Ll~~AlTh~s~~~----~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~ 111 (370)
..++|+++|..|.+.+++.+|||..|... ..+|||||||||+||.+++|++||.+||+.++|+|+.+|+.+|||++
T Consensus 275 ~~~~e~~~g~vF~Hirlla~aft~rs~~~n~Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNet 354 (533)
T KOG1817|consen 275 LTQFEEIIGIVFIHIRLLARAFTLRSIPFNHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNET 354 (533)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhccCCCchhhhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHH
Confidence 35789999999999999999999999873 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHh
Q 017515 112 LARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGL 191 (370)
Q Consensus 112 La~~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~~l 191 (370)
.+++|..+|+++|+......-+ ......|..||+|||+|||+|+|.|...+. +|++.+
T Consensus 355 qakva~~lgf~e~li~n~~~k~--------------------~~~lk~K~~ADlfEAfiGaLyvD~~le~~~--qf~~~l 412 (533)
T KOG1817|consen 355 QAKVADDLGFHEYLITNFDLKD--------------------FQNLKLKDYADLFEAFIGALYVDKGLEYCR--QFLRVL 412 (533)
T ss_pred HHHHHHHhCCchhhhhCcchhh--------------------hhhhhHHHHHHHHHHHHHHHhhcCCcHHHH--HHHHHH
Confidence 9999999999999988753210 014468999999999999999999876655 789999
Q ss_pred hhhhhhhhhhc-cCCchHHHHHHHHHhcCC------c-eeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHH
Q 017515 192 LEPIVTLEELQ-QQPQPVTLLFKLCQKNGK------Q-VDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLN 258 (370)
Q Consensus 192 l~~~i~~~~~~-~~~~p~~~L~e~~~k~~~------~-~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~ 258 (370)
+.|.+...... .+.+|++.||.+|-.... . |-|.+.. +++.|++.|+++|+.+|+|.|+|.+.|+.+
T Consensus 413 ~~Prl~~fi~nq~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~r 492 (533)
T KOG1817|consen 413 FFPRLKEFIRNQDWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMR 492 (533)
T ss_pred hhHHHHHHHHhhhccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHH
Confidence 99999766554 477999999999976532 2 2344443 457899999999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 017515 259 AAREALEKLAQS 270 (370)
Q Consensus 259 AA~~AL~~L~~~ 270 (370)
||+.||+.+...
T Consensus 493 AA~~ALe~~~~d 504 (533)
T KOG1817|consen 493 AAMQALENLKMD 504 (533)
T ss_pred HHHHHHHHHHhh
Confidence 999999999753
No 8
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=99.96 E-value=1.5e-29 Score=209.28 Aligned_cols=124 Identities=40% Similarity=0.664 Sum_probs=99.3
Q ss_pred ChhHHHHHhcCCCCCC--CCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHHHHHHHcChhHHHh
Q 017515 49 NKRLLEEALTHSSYTD--STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR 126 (370)
Q Consensus 49 ~~~Ll~~AlTh~s~~~--~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La~~a~~~gL~~~l~ 126 (370)
|++|+.+||||+||.. ..+|||||||||+||++++++|+|+++| .++|.++.+|+.+|++++|+.+|.++||+++++
T Consensus 1 ~~~Ll~~alTH~S~~~~~~~~nerLefLGd~vL~~~vs~~l~~~~~-~~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i~ 79 (128)
T PF14622_consen 1 DDELLLQALTHKSYAHERKPNNERLEFLGDAVLGLVVSEYLFQRPP-ADEGELTRLRSNLVSNETLAEIAKQLGLDKLIR 79 (128)
T ss_dssp SHHHHHHHTB-HHHHHHTCB-SHHHHHHHHHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-B
T ss_pred CHHHHHHHhcCccccccccCccHHHHHHHHHHHHHHHHHHHHhCcC-ccchHHHHHHHHHhChHHHHHHHHHCCHHHHHH
Confidence 6789999999999874 6899999999999999999999999955 489999999999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhhh
Q 017515 127 HSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194 (370)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~~ll~~ 194 (370)
+..... .... ...+++++|+|||+|||||+|+|++.++ +|+..++-|
T Consensus 80 ~~~~~~------------------~~~~-~~~~~vlad~feAliGAiyld~G~~~a~--~~i~~~i~~ 126 (128)
T PF14622_consen 80 WGPGEE------------------KSGG-SGSDKVLADVFEALIGAIYLDSGFEAAR--KFIQKLILP 126 (128)
T ss_dssp --HHHH------------------HTTG-GG-HHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHH--
T ss_pred hCccHh------------------hcCC-CCCccHHHhHHHHHHHHHHHHcCHHHHH--HHHHHHhcc
Confidence 964221 0111 4568999999999999999999988766 667665533
No 9
>smart00535 RIBOc Ribonuclease III family.
Probab=99.94 E-value=6.6e-27 Score=194.02 Aligned_cols=126 Identities=41% Similarity=0.693 Sum_probs=109.5
Q ss_pred hHHHHHhcCCCCCCC-CCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHHHHHHHcChhHHHhhcc
Q 017515 51 RLLEEALTHSSYTDS-TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSA 129 (370)
Q Consensus 51 ~Ll~~AlTh~s~~~~-~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La~~a~~~gL~~~l~~~~ 129 (370)
.||.+||||||+... .+|||||||||+||+++++.|++.+||+.+++.|+.+++.++||++|+.+|.++||+++++.++
T Consensus 1 ~ll~~alth~s~~~~~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~~~ 80 (129)
T smart00535 1 SLLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRLGR 80 (129)
T ss_pred CHHHHHhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHccCc
Confidence 378999999999874 4999999999999999999999999999999999999999999999999999999999999875
Q ss_pred chhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhhhhhh
Q 017515 130 AALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT 197 (370)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~~ll~~~i~ 197 (370)
... .... ...+++++|+|||+|||||+|+|++ .+++|+..++.|.++
T Consensus 81 ~~~------------------~~~~-~~~~k~~a~~~eAliGAi~ld~g~~--~~~~~i~~~~~~~~~ 127 (129)
T smart00535 81 GEA------------------ISGG-RDKPSILADVFEALIGAIYLDSGLE--AAREFIRDLLGPRLE 127 (129)
T ss_pred hHh------------------hcCC-cccchHHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHhc
Confidence 421 0111 3578999999999999999999964 455888888877654
No 10
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=99.94 E-value=1.3e-26 Score=193.07 Aligned_cols=127 Identities=40% Similarity=0.646 Sum_probs=112.0
Q ss_pred hHHHHHhcCCCCCCC---CCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHHHHHHHcChhHHHhh
Q 017515 51 RLLEEALTHSSYTDS---TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRH 127 (370)
Q Consensus 51 ~Ll~~AlTh~s~~~~---~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La~~a~~~gL~~~l~~ 127 (370)
+|+.+||||+|+... .+|||||||||+||+++++++++.++|+.+++.++.+++.++||.+|+.+|.++||+++++.
T Consensus 1 ~ll~~alth~s~~~~~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~ 80 (133)
T cd00593 1 SLLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRL 80 (133)
T ss_pred CHHHHhhcCccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhcc
Confidence 478999999999873 79999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhhhhhhh
Q 017515 128 SAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTL 198 (370)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~~ll~~~i~~ 198 (370)
.+... .......+++++|+|||+|||||+|+|. ..+++|+..++.|.++.
T Consensus 81 ~~~~~-------------------~~~~~~~~k~~ad~~eAliGAiyld~g~--~~~~~~i~~~~~~~~~~ 130 (133)
T cd00593 81 GKGEE-------------------KSGGRLRPKILADVFEALIGAIYLDGGF--EAARKFLLRLLGPLIEE 130 (133)
T ss_pred CchHh-------------------hcCCcccccHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhh
Confidence 86431 0011457899999999999999999997 45568899988887754
No 11
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.94 E-value=1.5e-25 Score=205.11 Aligned_cols=154 Identities=24% Similarity=0.300 Sum_probs=133.4
Q ss_pred CchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCCCccc--c
Q 017515 205 PQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD--V 277 (370)
Q Consensus 205 ~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~--~ 277 (370)
++|++.|||++.+.+..|.|++.+ |.+.|+++|.+. ...++|.|.|||.||++||..+|..|+..++.... +
T Consensus 38 KS~IS~l~E~~~r~~~~v~fevl~eeGp~H~~~fv~rvtvg-~~~a~GeG~sKK~AKh~AA~~~L~~lk~l~~l~~v~k~ 116 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLTPVYEVLREEGPPHMPNFVFRVTVG-EITATGEGKSKKLAKHRAAEALLKELKKLPPLANVRKD 116 (339)
T ss_pred CChHHHHHHHHHHhCCCcceeeeeccCCccCCCeEEEEEEe-eeEEecCCCchhHHHHHHHHHHHHHHhcCCCccccccC
Confidence 799999999999999999999987 557999999997 78899999999999999999999999987654321 1
Q ss_pred cc--------c----ccCCchhhhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCC
Q 017515 278 CE--------I----FDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEK 345 (370)
Q Consensus 278 ~~--------~----~~~~~~~~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~ 345 (370)
.. . .+..+......||++.|+|+||+++|..|.|+++.+.|++|.+.|++.|+| +.++.+|.|.
T Consensus 117 ~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv----~~~~~~GkG~ 192 (339)
T KOG3732|consen 117 SLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSV----ENFTEEGKGP 192 (339)
T ss_pred cccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEe----cceeeecCCc
Confidence 00 0 011111235789999999999999999999999999999999999999999 7899999999
Q ss_pred CchhHHHHHHHHHHHHHHh
Q 017515 346 SRVKDAENSAASMMLRALR 364 (370)
Q Consensus 346 skkk~A~~~AA~~~l~~l~ 364 (370)
|| |.||++||.+||..|+
T Consensus 193 sK-KiAKRnAAeamLe~l~ 210 (339)
T KOG3732|consen 193 SK-KIAKRNAAEAMLESLG 210 (339)
T ss_pred hH-HHHHHHHHHHHHHHhc
Confidence 99 9999999999999987
No 12
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=4.5e-24 Score=191.25 Aligned_cols=232 Identities=19% Similarity=0.240 Sum_probs=192.9
Q ss_pred hhHHHhhcCCCChhhHHHHHHHHHHcC-cccCChhHHHHHhcCCCCCC-------------------CCCcchhhhhhHH
Q 017515 18 LLKEAMLTSLPSPEMEDAVFYVENIIN-YNFKNKRLLEEALTHSSYTD-------------------STSYQRLEFIGDA 77 (370)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~le~~lg-y~f~~~~Ll~~AlTh~s~~~-------------------~~~~erLe~LGda 77 (370)
...+...+..|.|..++.+.+|+++|| ..| ..+.+..|||.+|+.. ..+|+.|.-.|..
T Consensus 47 ~~~~~krs~~~~W~~~sel~afg~RL~~~~i-s~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~Gk~ 125 (333)
T KOG3769|consen 47 PSPPMKRSEYVNWDYNSELSAFGKRLQSEEI-SLSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQ 125 (333)
T ss_pred CCccchhhcccCcchhHHHHHHHHHhccccc-cHHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHHHH
Confidence 344555667777878889999999999 666 6789999999999864 5799999999999
Q ss_pred HHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHHHHHHHcChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcC
Q 017515 78 ALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIK 157 (370)
Q Consensus 78 vL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La~~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (370)
+++++|+.||..+||++++..+..+.+.+++.++|+.+|..+|+.++++...... .+...
T Consensus 126 ~~~~~v~~~l~~kyPrlP~E~l~ai~n~ll~ee~LahiAt~lGie~l~~seeFp~--------------------~~eis 185 (333)
T KOG3769|consen 126 FLSFYVTEYLKCKYPRLPEEGLHAIVNGLLGEEVLAHIATHLGIEELGLSEEFPK--------------------VGEIS 185 (333)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHhhhHHHHHHHHHHhhHHHHhhcccCCC--------------------chhhh
Confidence 9999999999999999999999999999999999999999999999998875421 11122
Q ss_pred CchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHhcCC-ceeEEEeec------C
Q 017515 158 APKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGK-QVDIKHWRK------N 230 (370)
Q Consensus 158 ~~k~lad~feAliGAIyld~g~~~~~~~~v~~~ll~~~i~~~~~~~~~~p~~~L~e~~~k~~~-~~~y~~~~~------~ 230 (370)
..+...+++-|++|+++...|+....-+ |..+++...+++-++....+|...|-++|++++. .|+++++.+ .
T Consensus 186 q~ess~~aI~Al~~~~~~ek~~~~v~dF-I~~qi~~k~L~~~~m~ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~ 264 (333)
T KOG3769|consen 186 QDESSRRAIGALLGSVGLEKGFNFVRDF-INDQILSKDLDPREMWQLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAE 264 (333)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHH-HHHHhhhhccchHhhccccchHHHHHHHHHHcCCCCchhHHHHHhccCccC
Confidence 3467788888888888888776654422 2244555555655677778999999999999998 788888753 3
Q ss_pred CeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcC
Q 017515 231 RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSM 271 (370)
Q Consensus 231 ~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 271 (370)
+.|.+.+|.|.+.+|.|.|.|-+.|++.||.+||..+-...
T Consensus 265 PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~t 305 (333)
T KOG3769|consen 265 PVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDHT 305 (333)
T ss_pred ceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcCC
Confidence 78999999999999999999999999999999999997764
No 13
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=99.90 E-value=3.3e-24 Score=173.95 Aligned_cols=110 Identities=43% Similarity=0.717 Sum_probs=89.4
Q ss_pred chhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHHHHHHHcChhHHHhhccchhhHHHHHHHHHhhcccc
Q 017515 69 QRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDN 148 (370)
Q Consensus 69 erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La~~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~ 148 (370)
||||||||+||+++++.|||.+||+.+++.|+.+|+.+|||.+|+.+|.++||++|++..+.....|..++.+.......
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLNNGDS 80 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHHhccc
Confidence 79999999999999999999999999999999999999999999999999999999999887777666664222111110
Q ss_pred --cccc--CCCcCCchHHHHHHHHHHHHHhhcCC
Q 017515 149 --TAVY--GGSIKAPKVLADIVESIAAAIYVDID 178 (370)
Q Consensus 149 --~~~~--~~~~~~~k~lad~feAliGAIyld~g 178 (370)
.... ......+|++||+|||+|||||+|+|
T Consensus 81 ~~~~~~~~~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 81 ESSISYDPKNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp -C-SSS--SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCccccCCccHHHHHHHHHHHHHHHHhcC
Confidence 0000 01245689999999999999999998
No 14
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=99.88 E-value=1.5e-21 Score=182.67 Aligned_cols=132 Identities=28% Similarity=0.419 Sum_probs=114.0
Q ss_pred HHHHHHHHHHcCcccCChhHHHHHhcCCCCCC------------------------------------------------
Q 017515 33 EDAVFYVENIINYNFKNKRLLEEALTHSSYTD------------------------------------------------ 64 (370)
Q Consensus 33 ~~~~~~le~~lgy~f~~~~Ll~~AlTh~s~~~------------------------------------------------ 64 (370)
+..+..||+.|||+|+|.-||..||||||+..
T Consensus 40 ~~~l~~~e~~i~y~f~~r~~~~lal~h~s~~~~~Gt~~dh~kns~tncg~r~~~yg~~~~~~~~kr~~gin~li~imk~l 119 (533)
T KOG1817|consen 40 HQSLDHLEELIGYTFQDRCLLQLALTHPSHKLNYGTNPDHAKNSLTNCGIRQPKYGDRKEHIMTKRKLGINTLINIMKRL 119 (533)
T ss_pred HHhHHHHHHHhCeeecchHHHHHHhcCchHHhhCCCCchhhhccccccCcCCcccchhHHHHHHHHHhhhhHHHHHHhhc
Confidence 36788999999999999999999999999741
Q ss_pred ---------CCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHHHHHHHcChhHHHhhccchhhHH
Q 017515 65 ---------STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDK 135 (370)
Q Consensus 65 ---------~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La~~a~~~gL~~~l~~~~~~~~~~ 135 (370)
...|||||||||++.+++++.+++..+|...+|.|...|+++|-|..++.++.++.++.|+.......
T Consensus 120 ~~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~eggLatyrta~vqnr~la~lakklrkd~fl~yahg~d--- 196 (533)
T KOG1817|consen 120 GVIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLEEGGLATYRTAIVQNRHLAKLAKKLRKDEFLLYAHGYD--- 196 (533)
T ss_pred cCCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHccccccccchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCcc---
Confidence 15789999999999999999999999999999999999999999999999999999999998764321
Q ss_pred HHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHH
Q 017515 136 VKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQK 183 (370)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~ 183 (370)
.+.. ......++++|||++||+|+|.|...+.
T Consensus 197 ------l~~~----------~E~Kha~an~feavi~a~~l~g~~~~~e 228 (533)
T KOG1817|consen 197 ------LCFE----------TELKHAMANCFEAVIGAKYLDGGLVVAE 228 (533)
T ss_pred ------hhhH----------HHHHHHHHHHHHHHhHHHHHhcchHHHH
Confidence 0111 2234678999999999999999977655
No 15
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.66 E-value=3.6e-16 Score=132.81 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=69.6
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhcCC
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTY 368 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~~~ 368 (370)
...|||+.||||||+++... .|.++.++||+|.+.|+++|.| +|..+++|.|+|| |+|||.||+.||..|..+-.
T Consensus 106 k~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V---~g~~~g~G~G~SK-KeAEQ~AAk~AL~~L~~~~~ 180 (183)
T PHA02701 106 KTLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVV---SGKVVATASGCSK-KLARHAACADALTILINNCG 180 (183)
T ss_pred CCCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEE---CCEEEEEEEeCCH-HHHHHHHHHHHHHHHHhhcc
Confidence 45699999999999998877 8999988999999999999999 6899999999999 99999999999999986554
Q ss_pred C
Q 017515 369 L 369 (370)
Q Consensus 369 ~ 369 (370)
|
T Consensus 181 i 181 (183)
T PHA02701 181 I 181 (183)
T ss_pred c
Confidence 4
No 16
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.63 E-value=1.4e-15 Score=110.97 Aligned_cols=68 Identities=35% Similarity=0.596 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHH
Q 017515 292 AAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRAL 363 (370)
Q Consensus 292 ~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l 363 (370)
|||+.|+||||++++..|.|++....|++|.+.|+|+|.+ ++..+++|.|+|| |+||+.||..||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i---~~~~~~~g~g~sK-k~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTV---GGKITGEGEGSSK-KEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEE---CCEEEEEeecCCH-HHHHHHHHHHHHHhC
Confidence 6999999999999999999999878899999999999999 5789999999999 999999999999875
No 17
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=99.61 E-value=4.4e-16 Score=168.68 Aligned_cols=223 Identities=29% Similarity=0.350 Sum_probs=166.8
Q ss_pred HHHHHHHHcCcccCChhHHHHHhcCCCCCC---CCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHH
Q 017515 35 AVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111 (370)
Q Consensus 35 ~~~~le~~lgy~f~~~~Ll~~AlTh~s~~~---~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~ 111 (370)
.+..++..+||.|.+..++.+|+||-++.. ...|+||||+||+++++.++++++...+..+++.++.+|++.++|.-
T Consensus 1370 ~~~~~e~~l~y~f~~~~~l~~a~th~s~~~~~~~~C~qrleflgd~vld~~it~hl~~~~~~~sp~~~td~rsa~vnn~~ 1449 (1606)
T KOG0701|consen 1370 SFGKFEEKLNYRFKLKPYLTQATTHASYIYNRITDCYQRLEFLGDAVLDYLITKHLYEDPRQHSPGVLTDLRSALVNNTI 1449 (1606)
T ss_pred HHHhhhcccchhhhhhhcccccccccccccCccchhhhhHHHhHHhhhhhhhhhcccccccccCchhhhhhhhHhhcccc
Confidence 477899999999999999999999999876 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcChhHHHhhccchhhHHHHHHHHHhhccc-c-ccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHH
Q 017515 112 LARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED-N-TAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFR 189 (370)
Q Consensus 112 La~~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~ 189 (370)
.+.+|.+.++++|+......+...+..+.....+.. . ..-+.+-...+|.++|+||++.||||+|+|.....+ +.
T Consensus 1450 ~a~~av~~~~~K~~~~~~~~l~~~I~~~v~~~~q~~~~~~~~~~edievpKa~gdi~esiagai~~dsg~~~~~~---~~ 1526 (1606)
T KOG0701|consen 1450 FASLAVKADLHKFIIAASPGLIHNIDRFVSFQLQSNLDSLFGWEEDIEVPKALGDIFESIAGAIKLDSGNMMEPC---IE 1526 (1606)
T ss_pred chhhHHhhcchhHHHhhccccccchHHHHHHHHhhccccCCCchhhcccchhhhhhhhcccceeecCcccccchH---hh
Confidence 999999999999999999888877777765433211 0 111111266899999999999999999999433321 11
Q ss_pred HhhhhhhhhhhhccCCchHHHHHHHHHhcCCceeEE---EeecCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHH
Q 017515 190 GLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIK---HWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEK 266 (370)
Q Consensus 190 ~ll~~~i~~~~~~~~~~p~~~L~e~~~k~~~~~~y~---~~~~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~ 266 (370)
. ..+. .|.+..-|....+.....|. .+...+.-..+|.+.++....|.|...+.||..|++.|++.
T Consensus 1527 ~-~~a~----------p~~s~~~E~~~~h~~~~~~~~~~k~~d~~~~~~tv~~~~~~~~~~~g~~~~~aK~s~~k~A~~l 1595 (1606)
T KOG0701|consen 1527 K-FWAL----------PPRSPIRELLELHPERALFGKCEKVADAGKVRVTVDVFNKEVFAGEGRNYRIAKASAAKAALKL 1595 (1606)
T ss_pred c-CcCC----------CCccchhhhccccceeeccchhhhhhhccceEEEEEecccchhhhcchhhhhhhhhHHHHHHHH
Confidence 1 1111 11111111111111111111 11233455667777777788888999999999999999999
Q ss_pred hhhcC
Q 017515 267 LAQSM 271 (370)
Q Consensus 267 L~~~~ 271 (370)
+....
T Consensus 1596 l~~~~ 1600 (1606)
T KOG0701|consen 1596 LKKLG 1600 (1606)
T ss_pred HHHhh
Confidence 87654
No 18
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.60 E-value=4.4e-15 Score=108.19 Aligned_cols=66 Identities=36% Similarity=0.607 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHH
Q 017515 293 AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRAL 363 (370)
Q Consensus 293 ~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l 363 (370)
||+.|+|+||++++ .|.|.+....|++|.+.|+|+|.+ ++..+++|.|.|| |+||+.||+.||..|
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i---~~~~~~~g~g~sK-k~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKV---GGEYTGEGEGSSK-KEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEE---CCEEEEEeccCCH-HHHHHHHHHHHHHhc
Confidence 68999999999999 799999877899999999999999 6889999999999 999999999999887
No 19
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.58 E-value=6.6e-15 Score=126.08 Aligned_cols=72 Identities=22% Similarity=0.319 Sum_probs=64.8
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhc
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRES 366 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~ 366 (370)
...|||+.||||||+++... |..+.+.||+|.+.|+++|.| +|..+++|.|+|| |+|||.||+.||..|...
T Consensus 107 K~kNpKS~LQE~~Qk~~~~~--y~~i~~~Gp~H~p~F~v~V~I---~g~~~g~G~G~SK-KeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA03103 107 KDKNPCTVINEYCQITSRDW--SINITSSGPSHSPTFTASVII---SGIKFKPAIGSTK-KEAKNNAAKLAMDKILNY 178 (183)
T ss_pred ccCChhHHHHHHHHHhCCCe--EEEEEeeCCCCCceEEEEEEE---CCEEEEEeeeCCH-HHHHHHHHHHHHHHHHhc
Confidence 45699999999999998774 656667899999999999999 6899999999999 999999999999999754
No 20
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=99.55 E-value=2.1e-14 Score=155.87 Aligned_cols=160 Identities=45% Similarity=0.622 Sum_probs=125.0
Q ss_pred HHHHHHHHHcC--cccCCh--------hHHHHHhcCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHH
Q 017515 34 DAVFYVENIIN--YNFKNK--------RLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLR 103 (370)
Q Consensus 34 ~~~~~le~~lg--y~f~~~--------~Ll~~AlTh~s~~~~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr 103 (370)
-..+.+++.++ |.|.+. ++|.+|||++++....++||||+|||++|++.++.+|+.+||+..||+++.+|
T Consensus 979 ~~~E~~e~i~n~~~~Fs~~~~~i~~~~s~LLEAlT~~~~~~s~s~Erle~Lgds~Lk~avsr~l~L~ypd~~Egqls~lr 1058 (1606)
T KOG0701|consen 979 SDWEAVEKILNFRYVFSISLASIALSTSLLLEALTTSSCQDSFSLERLELLGDSLLKLAVSRHLFLTYPDLDEGQLSRLR 1058 (1606)
T ss_pred ccccccccccccceeccccccccccchhHHHHHhhcCccccchhHHHHHhhHHHHHHHHHHHHHHHhCCcccchhHHHHH
Confidence 35678899999 999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhcChHHHHHHHHHcChhHHHhhccchhh-------------------------------HHHHHHHHHhhcccc-ccc
Q 017515 104 AANISTEKLARVAVKHGFYKFVRHSAAALD-------------------------------DKVKEFAEAVSQEDN-TAV 151 (370)
Q Consensus 104 ~~lvsn~~La~~a~~~gL~~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~-~~~ 151 (370)
+..++++.++.+|...||..|++....... ..+..|.......+. ...
T Consensus 1059 ~~~~~~~nl~~la~~~gl~~~~~~~~fep~~~~~p~~~~~~~~~~k~~~~~~~~~~~~e~~e~~~df~e~~~~~~~~~~~ 1138 (1606)
T KOG0701|consen 1059 DVNVSNDNLARLAVKKGLYSYLRHEGFEPSRWWVPGQLDVNNVDCKDLSGDQNYILYKELDEKIKDFQEAMEKEDGDSRS 1138 (1606)
T ss_pred HhcccccchhhhhhcccchhhcccccccccccccccccccccccccccccccccccccchhhhhhHHHHhhhccCCcccc
Confidence 999999999999999999999999833222 122222221111111 111
Q ss_pred cCC--CcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhhh
Q 017515 152 YGG--SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194 (370)
Q Consensus 152 ~~~--~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~~ll~~ 194 (370)
.++ ....+|.++|++||++||+|+|+|...... .+..++++.
T Consensus 1139 ~~~~~~~~~~ks~adl~eaLlga~~vD~~~~~~~~-~~~~~~lk~ 1182 (1606)
T KOG0701|consen 1139 KGGDHDWLAPKSPADLLEALLGAIYVDGGLLETFE-TIGDSFLKW 1182 (1606)
T ss_pred cccccceecCCCHHHHHHHHHHhhhhhccchhhhh-HHHHHHHhh
Confidence 111 256799999999999999999999765432 234444443
No 21
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.52 E-value=5.5e-14 Score=102.50 Aligned_cols=66 Identities=44% Similarity=0.771 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCCCCCceEEecccCCCCC-cceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHH
Q 017515 293 AKQKLHELCGKKKWPKPSYKIEKDEGPSHD-KKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRAL 363 (370)
Q Consensus 293 ~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~-~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l 363 (370)
||+.|+|||++.++.+|.|... ..|++|. +.|.|+|.+ +|..++.|.|.|| |+||+.||..||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~i---~~~~~~~g~g~sK-k~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIE-EEGPSHHRPRFICTVYI---DGKEYGEGEGSSK-KEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEE-EESSSSSSEEEEEEEEE---TTEEEEEEEESSH-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEE-EeCCCCCCceEEEEEEE---CCEEEeEeccCCH-HHHHHHHHHHHHHhC
Confidence 7999999999999776544444 5565555 899999999 7999999999999 999999999999986
No 22
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.50 E-value=4.5e-14 Score=130.03 Aligned_cols=109 Identities=27% Similarity=0.387 Sum_probs=89.2
Q ss_pred ccCHHHHHHHHHHHHHHHhhhcCCCcccccccccCCchhhhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEE
Q 017515 249 SEQKEIAKLNAAREALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSA 328 (370)
Q Consensus 249 g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~ 328 (370)
|.+...|++.||..||..|.......- ......++ .+.|+|.|||+|.+++.. |.|++..++||.|.+.|+++
T Consensus 2 g~t~~~a~~daaa~al~~l~~~~~~~~---~~~~~~~g---~KS~IS~l~E~~~r~~~~-v~fevl~eeGp~H~~~fv~r 74 (339)
T KOG3732|consen 2 GKTMQQAKHDAAAKALQVLQNGLISEG---VMLNADPG---AKSPISLLQEYGLRRGLT-PVYEVLREEGPPHMPNFVFR 74 (339)
T ss_pred ccchhhhhccccccchhhccCCCcchh---cccccCcc---cCChHHHHHHHHHHhCCC-cceeeeeccCCccCCCeEEE
Confidence 677889999999999999976532211 11111111 278999999999999954 79999999999999999999
Q ss_pred EEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhcCCC
Q 017515 329 VQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTYL 369 (370)
Q Consensus 329 v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~~~~ 369 (370)
|+| |.+.+.|.|+|| |.||+.||..+|..|+..--+
T Consensus 75 vtv----g~~~a~GeG~sK-K~AKh~AA~~~L~~lk~l~~l 110 (339)
T KOG3732|consen 75 VTV----GEITATGEGKSK-KLAKHRAAEALLKELKKLPPL 110 (339)
T ss_pred EEE----eeeEEecCCCch-hHHHHHHHHHHHHHHhcCCCc
Confidence 999 799999999999 999999999999999865433
No 23
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=99.50 E-value=6.8e-14 Score=105.27 Aligned_cols=74 Identities=36% Similarity=0.555 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCC----eEEEee--cCCCchhHHHHHHHHHHHHHHh
Q 017515 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDG----VLFITG--DEKSRVKDAENSAASMMLRALR 364 (370)
Q Consensus 291 ~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~----~~~~~g--~g~skkk~A~~~AA~~~l~~l~ 364 (370)
+++++.|+|+|++++|+.|+|++..+.||+|.+.|+++|+|.+.+. .....+ .++++||+|+..||+.+|+.|+
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 3789999999999999999999998999999999999999974322 122223 6777779999999999999885
No 24
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.40 E-value=2.3e-12 Score=110.55 Aligned_cols=85 Identities=21% Similarity=0.234 Sum_probs=68.7
Q ss_pred HHHHHhhhhhhhhhhhc--cCCchHHHHHHHHHhcCCceeEEEee----cCCeEEEEEEECCeeEEEEeccCHHHHHHHH
Q 017515 186 MIFRGLLEPIVTLEELQ--QQPQPVTLLFKLCQKNGKQVDIKHWR----KNRKNIASVYVDGSFVASASSEQKEIAKLNA 259 (370)
Q Consensus 186 ~v~~~ll~~~i~~~~~~--~~~~p~~~L~e~~~k~~~~~~y~~~~----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~A 259 (370)
.++.+++.+.+....+. ...||++.||||||+.+....|.... |.+.|+++|.|+|..+++|.|.|||+||++|
T Consensus 88 ~~~~~l~~~~i~~~k~~d~K~kNpKS~LQE~~Qk~~~~~y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~A 167 (183)
T PHA03103 88 REDNKSFSDTIPYKKIISWKDKNPCTVINEYCQITSRDWSINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNA 167 (183)
T ss_pred HHHHHHhhhhcchhhhhccccCChhHHHHHHHHHhCCCeEEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHH
Confidence 46777777776544332 24599999999999998876444333 5589999999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q 017515 260 AREALEKLAQS 270 (370)
Q Consensus 260 A~~AL~~L~~~ 270 (370)
|+.||..|...
T Consensus 168 Ak~AL~~L~~~ 178 (183)
T PHA03103 168 AKLAMDKILNY 178 (183)
T ss_pred HHHHHHHHHhc
Confidence 99999998653
No 25
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.40 E-value=1.4e-12 Score=110.99 Aligned_cols=67 Identities=24% Similarity=0.355 Sum_probs=60.1
Q ss_pred CCchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 204 QPQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
..|||+.||||||+.+..+.|..+. |.+.|+++|.|+|..+++|.|.|||+||++||+.||..|...
T Consensus 107 ~~DpKS~LQE~~Q~~~~~l~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~ 178 (183)
T PHA02701 107 TLNPVSAVNEFCMRTHRPLEFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILINN 178 (183)
T ss_pred CCCccHHHHHHHHhcCCCCeEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence 4599999999999998866897765 448999999999999999999999999999999999998543
No 26
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.37 E-value=3.3e-12 Score=92.90 Aligned_cols=61 Identities=30% Similarity=0.385 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhcCCceeEEEee-c----CCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHh
Q 017515 207 PVTLLFKLCQKNGKQVDIKHWR-K----NRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267 (370)
Q Consensus 207 p~~~L~e~~~k~~~~~~y~~~~-~----~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L 267 (370)
|++.|+|+|+++++.|.|.... . .+.|+|.|+++|..+++|.|.|||+||++||+.||+.|
T Consensus 1 p~~~L~e~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGLPPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCCCCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence 7899999999999988998875 2 35899999999999999999999999999999999877
No 27
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.36 E-value=6.9e-12 Score=91.31 Aligned_cols=61 Identities=33% Similarity=0.413 Sum_probs=54.6
Q ss_pred hHHHHHHHHHhcCCceeEEEee-c----C-CeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHh
Q 017515 207 PVTLLFKLCQKNGKQVDIKHWR-K----N-RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267 (370)
Q Consensus 207 p~~~L~e~~~k~~~~~~y~~~~-~----~-~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L 267 (370)
|++.|+|||++.+..++|.... . . +.|+++|+++|..++.|.|.|||+||+.||..||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 7899999999999988876553 1 1 5899999999999999999999999999999999876
No 28
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.33 E-value=8.6e-12 Score=90.80 Aligned_cols=62 Identities=34% Similarity=0.398 Sum_probs=55.2
Q ss_pred chHHHHHHHHHhcCC-ceeEEEee-c----CCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHh
Q 017515 206 QPVTLLFKLCQKNGK-QVDIKHWR-K----NRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267 (370)
Q Consensus 206 ~p~~~L~e~~~k~~~-~~~y~~~~-~----~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L 267 (370)
||++.|+|+|+++++ .|.|.... . .+.|++.|.++|..+++|.|.|||+||+.||+.||+.|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 699999999999955 88898853 2 36899999999999999999999999999999999865
No 29
>PRK12371 ribonuclease III; Reviewed
Probab=99.17 E-value=1.3e-10 Score=105.73 Aligned_cols=64 Identities=17% Similarity=0.056 Sum_probs=57.7
Q ss_pred chHHHHHHHHHhcCC-ceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515 206 QPVTLLFKLCQKNGK-QVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 206 ~p~~~L~e~~~k~~~-~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 269 (370)
|||+.||||||+.+. .|.|++.. |.+.|+|+|+++|..+|+|.|.|||+|+++||+.||..+..
T Consensus 162 d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 162 DAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence 899999999998755 78898774 44789999999999999999999999999999999999854
No 30
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=99.05 E-value=8.4e-10 Score=105.59 Aligned_cols=151 Identities=22% Similarity=0.211 Sum_probs=100.3
Q ss_pred chHHHHHHHHHhcCC-ceeEEEee---cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCCCccc---c-
Q 017515 206 QPVTLLFKLCQKNGK-QVDIKHWR---KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCD---V- 277 (370)
Q Consensus 206 ~p~~~L~e~~~k~~~-~~~y~~~~---~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~---~- 277 (370)
..+..|+||+|..-. .|.|++.. ..-.|.++|.+|+..+|+|+|.|||.||..||+++|..|......... .
T Consensus 376 s~vCiLhEy~q~~lk~~pvyef~e~~n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd~~~~~~n~~d~ 455 (650)
T KOG4334|consen 376 SKVCILHEYAQQCLKSLPVYEFAENDNNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPDLRVSEDNVCDG 455 (650)
T ss_pred eeeehHHHHHHHHhhhcceeehhhccCCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcchhhhcccccccc
Confidence 457799999998876 67786654 235899999999999999999999999999999999999643211100 0
Q ss_pred ---------cc--cccCCc----------hhhhhhhHHHHHHHHHHhc-CCCCCceEEecccCCCCCcceEEEEEEEecC
Q 017515 278 ---------CE--IFDDID----------EKFEIEAAKQKLHELCGKK-KWPKPSYKIEKDEGPSHDKKFMSAVQIATTD 335 (370)
Q Consensus 278 ---------~~--~~~~~~----------~~~~~~~~ks~L~e~~~k~-~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~ 335 (370)
+. .+..+. ..-..-.|-+.|.+..+++ +|.--.....-..+..+...|++.|
T Consensus 456 k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d~~ik~E~i~~~nqkse~im~~------ 529 (650)
T KOG4334|consen 456 KVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWNDLVIKKEMIGNGNQKSEVIMIL------ 529 (650)
T ss_pred cccccccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcceeeeeeccCCCCccceeEeee------
Confidence 00 111110 0111224555666655554 3321111111122344555565554
Q ss_pred CeEEEeecCCCchhHHHHHHHHHHHHHH
Q 017515 336 GVLFITGDEKSRVKDAENSAASMMLRAL 363 (370)
Q Consensus 336 ~~~~~~g~g~skkk~A~~~AA~~~l~~l 363 (370)
|++...|.+++| |+++|.|+++.|+.|
T Consensus 530 Gkht~~~~cknk-r~gkQlASQ~ilq~l 556 (650)
T KOG4334|consen 530 GKHTEEAECKNK-RQGKQLASQRILQKL 556 (650)
T ss_pred ccceeeeeeech-hHHHHHHHHHHHHHh
Confidence 899999999999 999999999999876
No 31
>PRK14718 ribonuclease III; Provisional
Probab=99.04 E-value=1.2e-09 Score=105.20 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=58.0
Q ss_pred chHHHHHHHHHhcCC-ceeEEEee-----cCCeEEEEEEECCe-eEEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 206 QPVTLLFKLCQKNGK-QVDIKHWR-----KNRKNIASVYVDGS-FVASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 206 ~p~~~L~e~~~k~~~-~~~y~~~~-----~~~~f~~~v~v~g~-~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
|||+.||||||++++ .|.|.++. |.+.|++.|+++|. ..|+|.|.|||+|++.||+.||+.|...
T Consensus 152 DyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~~~ 223 (467)
T PRK14718 152 DAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVTAV 223 (467)
T ss_pred CHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhccc
Confidence 899999999999998 57898865 44799999999995 5589999999999999999999999744
No 32
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.02 E-value=1.2e-09 Score=98.62 Aligned_cols=65 Identities=26% Similarity=0.307 Sum_probs=60.0
Q ss_pred chHHHHHHHHHhcCC-ceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 206 QPVTLLFKLCQKNGK-QVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 206 ~p~~~L~e~~~k~~~-~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
+|++.||||+|.+++ .|.|+.+. |++.|++.|.++|..+|+|.|+|||+|++.||+.||..|...
T Consensus 162 D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~ 232 (235)
T COG0571 162 DPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVK 232 (235)
T ss_pred ChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhccc
Confidence 899999999999998 78899875 557999999999999999999999999999999999998654
No 33
>PRK12372 ribonuclease III; Reviewed
Probab=99.01 E-value=2.3e-09 Score=102.68 Aligned_cols=64 Identities=20% Similarity=0.132 Sum_probs=57.2
Q ss_pred chHHHHHHHHHhcCC-ceeEEEee-----cCCeEEEEEEECCe-eEEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515 206 QPVTLLFKLCQKNGK-QVDIKHWR-----KNRKNIASVYVDGS-FVASASSEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 206 ~p~~~L~e~~~k~~~-~~~y~~~~-----~~~~f~~~v~v~g~-~~~~g~g~skk~Ak~~AA~~AL~~L~~ 269 (370)
|||+.||||||++++ .|.|+++. |.+.|++.|+++|. ..++|.|.|||+|+++||+.||+.|..
T Consensus 152 D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~ 222 (413)
T PRK12372 152 DAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMA 222 (413)
T ss_pred CHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 799999999999988 57898765 44799999999985 568999999999999999999999984
No 34
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=98.99 E-value=1.2e-09 Score=107.79 Aligned_cols=121 Identities=28% Similarity=0.279 Sum_probs=97.2
Q ss_pred cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCCCcccccc------------cccCCchhhhhhhHHHH
Q 017515 229 KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDVCE------------IFDDIDEKFEIEAAKQK 296 (370)
Q Consensus 229 ~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~~~------------~~~~~~~~~~~~~~ks~ 296 (370)
+.+.|.+.|.|+|..+- ||.|+..||+.|++.+.+.++..+..+. ..+-........||++.
T Consensus 22 ~~p~~~~~~~v~~~~~~------~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npv~l 95 (542)
T KOG2777|consen 22 HAPLFPFSVEVNGQEFP------KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQADAFLSLGKEGKNPVSL 95 (542)
T ss_pred CCCcccceEEecccccc------cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhHHHHhhhhccCCchHH
Confidence 56889999999987654 9999999999999999887665332110 00001112236799999
Q ss_pred HHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 297 LHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 297 L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
|+|+.+ .|.|.+..+.||.|.+.|.|.|.| +|..+..| |+|| |+|++.||..||+.|..
T Consensus 96 l~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~v---dg~~~~~~-~~sK-k~ak~~aa~~al~~l~~ 154 (542)
T KOG2777|consen 96 LHELAN-----GLFFDFVNESGPQHAPKFVMSVVV---DGRWFEGG-GRSK-KEAKQEAAMAALQVLFK 154 (542)
T ss_pred HHHHhc-----ccceeeeccCCCCCCceEEEEEEE---CCEEccCC-Ccch-HHHHHHHHHHHHHHHHh
Confidence 999997 578999999999999999999999 67777777 9999 99999999999999874
No 35
>PRK00102 rnc ribonuclease III; Reviewed
Probab=98.96 E-value=2.8e-09 Score=97.05 Aligned_cols=64 Identities=25% Similarity=0.278 Sum_probs=57.8
Q ss_pred chHHHHHHHHHhcCC-ceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515 206 QPVTLLFKLCQKNGK-QVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 206 ~p~~~L~e~~~k~~~-~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 269 (370)
||++.|+|+|++.+. .|.|++.. +.+.|+++|+++|..+|+|.|.|||+||++||+.||+.|..
T Consensus 159 ~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 159 DYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred CHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 899999999999987 57898764 23789999999999999999999999999999999999864
No 36
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=98.94 E-value=5.8e-09 Score=94.33 Aligned_cols=62 Identities=29% Similarity=0.325 Sum_probs=56.2
Q ss_pred chHHHHHHHHHhcCC-ceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHh
Q 017515 206 QPVTLLFKLCQKNGK-QVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267 (370)
Q Consensus 206 ~p~~~L~e~~~k~~~-~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L 267 (370)
||++.|+|+|++.+. .|.|+... +.+.|+++|+++|..+|+|.|.|||+||++||++||+.|
T Consensus 153 ~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 153 DYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred ChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence 999999999999876 68998763 347999999999999999999999999999999999875
No 37
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=98.59 E-value=1.7e-07 Score=70.45 Aligned_cols=64 Identities=30% Similarity=0.294 Sum_probs=51.7
Q ss_pred CchHHHHHHHHHhcCC-ceeEEEeec-C----CeEEEEEEECCeeEE----------EEeccCHHHHHHHHHHHHHHHhh
Q 017515 205 PQPVTLLFKLCQKNGK-QVDIKHWRK-N----RKNIASVYVDGSFVA----------SASSEQKEIAKLNAAREALEKLA 268 (370)
Q Consensus 205 ~~p~~~L~e~~~k~~~-~~~y~~~~~-~----~~f~~~v~v~g~~~~----------~g~g~skk~Ak~~AA~~AL~~L~ 268 (370)
++|++.|+|+|+++++ .|.|.+..+ | ..|++.|.|.+.... .-...++++||..||..||..|+
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 4799999999999999 788998753 2 489999999875441 12257899999999999999873
No 38
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=9.7e-06 Score=73.96 Aligned_cols=72 Identities=22% Similarity=0.323 Sum_probs=65.2
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccC-CCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHh
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEG-PSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALR 364 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g-~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~ 364 (370)
...+|...|-++|++++..-|++.++.++| .+..|.|.+.+.- +.+..+.|.|.|- |.|++.||+.||..+-
T Consensus 230 ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs---~kkllGqG~Gesl-~~A~e~AA~dAL~k~y 302 (333)
T KOG3769|consen 230 QLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYS---GKKLLGQGQGESL-KLAEEQAARDALIKLY 302 (333)
T ss_pred cccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeec---CchhhccCcchHH-HHHHHHHHHHHHHHHH
Confidence 345899999999999999999999998888 5678999999998 6789999999998 9999999999999874
No 39
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=97.93 E-value=0.00015 Score=58.29 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=64.5
Q ss_pred CcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHHHHHHHcChhHHHhhccchhhHHHHHHHHHhhcc
Q 017515 67 SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQE 146 (370)
Q Consensus 67 ~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La~~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~ 146 (370)
|-=-|+|+||+|++++|-.|+....-. .+..|+......||...-|.+...+ ..++-- ....++.+- ++.
T Consensus 14 n~laLAy~GDAV~e~yVR~~~l~~g~~-k~~~lH~~a~~~VsAk~QA~il~~~--~~~Lte---~E~~I~KRg----RNa 83 (132)
T COG1939 14 NGLALAYLGDAVYELYVREYLLLKGKT-KPNDLHKRATAYVSAKAQALILKAL--LEFLTE---EEEEIVKRG----RNA 83 (132)
T ss_pred CHHHHHHhhhHHHHHHHHHHHHhcccC-ChHHHHHHHHHHhhHHHHHHHHHHH--HHHhhH---HHHHHHHHh----ccc
Confidence 444689999999999999999887533 6899999999999999888765432 112211 111122211 111
Q ss_pred ccccccCCCcCCchHHHHHHHHHHHHHhhcCCc
Q 017515 147 DNTAVYGGSIKAPKVLADIVESIAAAIYVDIDF 179 (370)
Q Consensus 147 ~~~~~~~~~~~~~k~lad~feAliGAIyld~g~ 179 (370)
.............--.+.-|||+||.+|+....
T Consensus 84 ks~T~~kn~dv~tYr~sTgfEAliGyLyL~~~~ 116 (132)
T COG1939 84 KSGTKPKNTDVETYRMSTGFEALIGYLYLTKQE 116 (132)
T ss_pred ccCCCCCCCChHHHHHhhhHHHHHHHHHHcccH
Confidence 100000000122335688999999999998864
No 40
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.72 E-value=5.1e-05 Score=78.65 Aligned_cols=158 Identities=23% Similarity=0.267 Sum_probs=120.7
Q ss_pred chHHHHHHHHHhcCCceeEEEeecC----CeEEEEEEECCe-eEEEEeccCHHHHHHHHHHHHHHHhhhcCCCcc-----
Q 017515 206 QPVTLLFKLCQKNGKQVDIKHWRKN----RKNIASVYVDGS-FVASASSEQKEIAKLNAAREALEKLAQSMPVNC----- 275 (370)
Q Consensus 206 ~p~~~L~e~~~k~~~~~~y~~~~~~----~~f~~~v~v~g~-~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~----- 275 (370)
+-+..|..||.|+...|.|...+.+ ..|.|.|.+.+. ..+.|...+||+|+.+||++-.+.|.......-
T Consensus 2 d~k~fly~~~~k~~~~p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p~ 81 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYGPTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIPT 81 (1282)
T ss_pred cHHHHHHHHHhhhccCcceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCcc
Confidence 4577899999999999999887644 479999999875 477888999999999999999999964321100
Q ss_pred ----------------------------------cc-cc-----------------------------------cccCCc
Q 017515 276 ----------------------------------DV-CE-----------------------------------IFDDID 285 (370)
Q Consensus 276 ----------------------------------~~-~~-----------------------------------~~~~~~ 285 (370)
.+ ++ ...+++
T Consensus 82 ~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~~~~ih 161 (1282)
T KOG0921|consen 82 LTSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDLNAEIH 161 (1282)
T ss_pred cccccccCcccccccccccccccccccccCCCCCCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhccCcccc
Confidence 00 00 112233
Q ss_pred hhhhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEec--CCeEEEeecCCCchhHHHHHHHHHHHHHH
Q 017515 286 EKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATT--DGVLFITGDEKSRVKDAENSAASMMLRAL 363 (370)
Q Consensus 286 ~~~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~--~~~~~~~g~g~skkk~A~~~AA~~~l~~l 363 (370)
+.+...|.|..|+++-|+... .-.|... .-|+.|.+.|+.+..+-++ +...+..+.|.+| |.|+...|.....+|
T Consensus 162 g~wt~eN~K~~ln~~~q~~~~-~~~y~~~-~~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnk-k~~~~~ca~s~vrqm 238 (1282)
T KOG0921|consen 162 GNWTMENAKKALNEYLQKMRI-QDNYKYT-IVGPEHVRSFEAEASIYVPQLNRNLVAKETGSNK-KVAEASCALSLVRQL 238 (1282)
T ss_pred CCCCcchhHHHHhHHHhhhhh-cccccee-ecCCccccchhhhHHHhhhhhchhhhhhhccccc-eecCcchHHHHHHHH
Confidence 455678999999999999987 4588877 6799999999998776543 4457778888887 999999999998877
Q ss_pred hhc
Q 017515 364 RES 366 (370)
Q Consensus 364 ~~~ 366 (370)
-+.
T Consensus 239 ~hl 241 (1282)
T KOG0921|consen 239 FHL 241 (1282)
T ss_pred HHH
Confidence 543
No 41
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=97.53 E-value=0.00038 Score=53.63 Aligned_cols=69 Identities=26% Similarity=0.267 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCC-----CCCceEEecccCCCCCcceEEEEEEEecCC--eEEEeecCCCchhHHHHHHHHHHHHHHhhc
Q 017515 294 KQKLHELCGKKKW-----PKPSYKIEKDEGPSHDKKFMSAVQIATTDG--VLFITGDEKSRVKDAENSAASMMLRALRES 366 (370)
Q Consensus 294 ks~L~e~~~k~~~-----~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~--~~~~~g~g~skkk~A~~~AA~~~l~~l~~~ 366 (370)
++.|+.||++... ..|.|.+....+ .|.|+|.+-.... .+.+. ...|| +.||+.||..|...|-+.
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-----~~~c~v~LP~~~pi~~i~g~-~~~sk-~~AK~sAAf~Ac~~L~~~ 74 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS-----GFICTVILPINSPIRSIEGP-PMRSK-KLAKRSAAFEACKKLHEA 74 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G------EEEEEE--TT-SS--EEEE---SSH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC-----cEEEEEECCCCCCCCeEEcc-ccccH-HHHHHHHHHHHHHHHHHc
Confidence 5789999998532 468888875532 8999999863211 23333 56677 999999999999999988
Q ss_pred CCC
Q 017515 367 TYL 369 (370)
Q Consensus 367 ~~~ 369 (370)
|.|
T Consensus 75 g~l 77 (90)
T PF03368_consen 75 GEL 77 (90)
T ss_dssp -S-
T ss_pred CCC
Confidence 865
No 42
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=97.42 E-value=0.00033 Score=69.88 Aligned_cols=65 Identities=29% Similarity=0.307 Sum_probs=54.7
Q ss_pred CCchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCCC
Q 017515 204 QPQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPV 273 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~ 273 (370)
..||++.|+|+.+ .+.|.... ++..|.+.|.|||..+..| |.|||+||++||..||+.|......
T Consensus 89 ~~npv~ll~e~~~----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~~~ 158 (542)
T KOG2777|consen 89 GKNPVSLLHELAN----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKIDEN 158 (542)
T ss_pred cCCchHHHHHHhc----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhccCC
Confidence 5699999999999 44555443 4578999999999999888 9999999999999999999876443
No 43
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=97.37 E-value=0.00014 Score=70.45 Aligned_cols=70 Identities=21% Similarity=0.202 Sum_probs=59.4
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHh
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALR 364 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~ 364 (370)
..+..+-.|+||+|+-....|+|++..... ....|..+|.+ ++-.|+.|.|.|| |.|+..||+.+|+.|-
T Consensus 373 ngks~vCiLhEy~q~~lk~~pvyef~e~~n--~stpysa~v~~---d~~~yGsG~g~sK-K~Ak~~AAR~tLeiLI 442 (650)
T KOG4334|consen 373 NGKSKVCILHEYAQQCLKSLPVYEFAENDN--NSTPYSAGVLP---DLFPYGSGVGASK-KTAKLVAARDTLEILI 442 (650)
T ss_pred CCceeeehHHHHHHHHhhhcceeehhhccC--CCCcccccccc---cccccccccccch-HHHHHHHHHHHHHHhc
Confidence 344566789999999988999998875543 35679999999 6899999999999 9999999999999873
No 44
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=96.24 E-value=0.029 Score=43.09 Aligned_cols=64 Identities=22% Similarity=0.211 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCC------ceeEEEeecCCeEEEEEEECCe---eEEEE-eccCHHHHHHHHHHHHHHHhhhcC
Q 017515 208 VTLLFKLCQKNGK------QVDIKHWRKNRKNIASVYVDGS---FVASA-SSEQKEIAKLNAAREALEKLAQSM 271 (370)
Q Consensus 208 ~~~L~e~~~k~~~------~~~y~~~~~~~~f~~~v~v~g~---~~~~g-~g~skk~Ak~~AA~~AL~~L~~~~ 271 (370)
++.|+.||++... .|.|.....+..|.|+|.+=.. ....| .-.||+.||+.||-.|...|-+.+
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g 75 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGSGFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAG 75 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G-EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCCcEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcC
Confidence 5788899987532 5788888888899999997321 11233 478999999999999999997654
No 45
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=96.19 E-value=0.0094 Score=60.73 Aligned_cols=124 Identities=20% Similarity=0.222 Sum_probs=84.8
Q ss_pred cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCC----------C--c-----ccccc------------
Q 017515 229 KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP----------V--N-----CDVCE------------ 279 (370)
Q Consensus 229 ~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~----------~--~-----~~~~~------------ 279 (370)
+.++|+++|.+||... ...|.|++.|+..||+..|........ + . .....
T Consensus 404 ~~~~~t~e~r~~~~~~-~a~gps~~~~~wh~~~k~lq~~~~p~ga~~r~~~~ge~~a~~p~~~~r~~as~ddr~a~~~~a 482 (816)
T KOG3792|consen 404 HRPRRTMEVRVNGLPA-EAEGPSKKTAKWHAARKRLQNEGRPTGAAQRFGRMGEDPASMPEPKGRRPASVDDRHANEKHA 482 (816)
T ss_pred ccchhhhhhhhcCCcc-ccCCcccccchHHHHHHHhhccCCCccccccccccCCCcccCCCCCCcccCCCcchhhhcccc
Confidence 4568999999999765 455999999999999999988842110 0 0 00000
Q ss_pred -cccCCc-----------hhhhhhhHHHHHHHHHHhcCCCCCceEEecccC-CCCCcceEEEEEEEecCCeEEEeecCCC
Q 017515 280 -IFDDID-----------EKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEG-PSHDKKFMSAVQIATTDGVLFITGDEKS 346 (370)
Q Consensus 280 -~~~~~~-----------~~~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g-~~~~~~f~~~v~v~~~~~~~~~~g~g~s 346 (370)
+++... .....+++...|+|- +. . -.|+..++.| .+|.++|+..|.+ ..+.+.|.+.+
T Consensus 483 ~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~Ek---~r-g-~k~El~set~~gs~~~R~v~gV~r----vG~~akG~~~~ 553 (816)
T KOG3792|consen 483 GIYPTEEELENVQRQVSHLERALKLVSDELAEK---RR-G-DKYELPSETGTGSHDKRFVKGVMR----VGILAKGLLLN 553 (816)
T ss_pred ccCccHHHHHHHHHhhhHHHHhhcchhHHHhhh---cc-c-cceecccccCCCCCCceeeeeeee----eehhhcccccc
Confidence 010000 112345555556555 32 2 2689888888 8999999999999 34788999999
Q ss_pred chhHHHHHHHHHHHHHH
Q 017515 347 RVKDAENSAASMMLRAL 363 (370)
Q Consensus 347 kkk~A~~~AA~~~l~~l 363 (370)
+ +.|+..|+..++..+
T Consensus 554 g-d~a~~~a~Lca~~pt 569 (816)
T KOG3792|consen 554 G-DRAVELALLCAEKPT 569 (816)
T ss_pred c-hHHHHHHHHhccCcc
Confidence 8 999999998877543
No 46
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=95.80 E-value=0.016 Score=60.78 Aligned_cols=71 Identities=27% Similarity=0.402 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhcC
Q 017515 292 AAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALREST 367 (370)
Q Consensus 292 ~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~~ 367 (370)
|-|+.|..||.|++++ |.|++. .+|+.....|.|+|.+. .......|...+| |.|+..||+.-.+.|-..|
T Consensus 2 d~k~fly~~~~k~~~~-p~~d~~-~~~~~~rqrf~ce~~~~--~~~~~~~~~stnk-Kda~knac~dfv~ylvr~G 72 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYG-PTYDIR-SEGRKGRQRFLCEVRVE--GFGYTAVGNSTNK-KDAATNAAQDFCQYLVREG 72 (1282)
T ss_pred cHHHHHHHHHhhhccC-cceehh-hhcccchhheeeeeecc--CCcceeeeccccc-chhhHHHHHHHHHHhhhhc
Confidence 4678999999999988 899986 66889999999999996 4567788888888 9999999999998886544
No 47
>PF14954 LIX1: Limb expression 1
Probab=93.67 E-value=0.15 Score=44.93 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=48.3
Q ss_pred hhhhHHHHHHHHHHhcC---CCCC-ceEEecccCCCCCcceEEEEEEEecCCeEEEee-cCCCchhHHHHHHHHHHHH
Q 017515 289 EIEAAKQKLHELCGKKK---WPKP-SYKIEKDEGPSHDKKFMSAVQIATTDGVLFITG-DEKSRVKDAENSAASMMLR 361 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~---~~~P-~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g-~g~skkk~A~~~AA~~~l~ 361 (370)
...|-+..||||=|... ...| .-.++.++.|+..|-|+|-|++. +|.-++.- ...|| -+|++.||+.||.
T Consensus 19 ~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLP--GGSCFGnfq~C~tk-AEARR~AAKiALm 93 (252)
T PF14954_consen 19 GDVNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLP--GGSCFGNFQNCPTK-AEARRSAAKIALM 93 (252)
T ss_pred ccchHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCC--CCCccCccccCCcH-HHHHhhhHHHHHH
Confidence 34588999999986532 1222 12234456677788999999996 56655544 34555 9999999999985
No 48
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=92.73 E-value=0.041 Score=53.22 Aligned_cols=68 Identities=29% Similarity=0.328 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHh
Q 017515 290 IEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALR 364 (370)
Q Consensus 290 ~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~ 364 (370)
...||..|.+||.+.+...|.|++.+. -++.|.+.+++ .|+.+..+.+..++|.|+|.||..+|....
T Consensus 374 ~~~~k~~l~~~~~~~~~~~~~ye~~~~----~d~lf~si~~~---~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~ 441 (477)
T KOG2334|consen 374 WDTPKMVLADLCVKTKANGPVYETVQR----TDKLFSSIATA---RGQKYNSSIWSPNKKSAEQDAAIVALRKSN 441 (477)
T ss_pred CCCHHHHHHHhhhhhcCCCcchhhhhh----hhhhhHHHhhh---hhhhhhccccCcchhhHHHHHHHHHHHhcC
Confidence 357999999999999999999999863 36889999999 577787777766669999999999998654
No 49
>PF14954 LIX1: Limb expression 1
Probab=92.00 E-value=0.52 Score=41.57 Aligned_cols=65 Identities=22% Similarity=0.148 Sum_probs=47.5
Q ss_pred cCCchHHHHHHHHHhc---CC------ceeEEEee-cCCeEEEEEEE-CCeeEEEEe-ccCHHHHHHHHHHHHHHHh
Q 017515 203 QQPQPVTLLFKLCQKN---GK------QVDIKHWR-KNRKNIASVYV-DGSFVASAS-SEQKEIAKLNAAREALEKL 267 (370)
Q Consensus 203 ~~~~p~~~L~e~~~k~---~~------~~~y~~~~-~~~~f~~~v~v-~g~~~~~g~-g~skk~Ak~~AA~~AL~~L 267 (370)
...|-+..|||+=+.+ |. .+.|+... .++.|+|-|++ +|..+|.=. ..||.+|++.||+.||.+-
T Consensus 19 ~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmNS 95 (252)
T PF14954_consen 19 GDVNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMNS 95 (252)
T ss_pred ccchHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHHH
Confidence 3457888999987632 21 24555543 67889999988 557777544 7899999999999999763
No 50
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=87.25 E-value=5.9 Score=30.87 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=55.5
Q ss_pred hhhhhhHHHHHHHHHHHHHH--HCCCCCcchhhHHHHHhcChHHHHHHHHHcChhHHHhhccchhhHHHHHHHHHhhccc
Q 017515 70 RLEFIGDAALGLALSNYVFL--AYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147 (370)
Q Consensus 70 rLe~LGdavL~~~v~~~l~~--~~p~~~~~~l~~lr~~lvsn~~La~~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~ 147 (370)
-|.-+||++++++++--|.+ -+|.- .-|-|..|+......||.+.+.--
T Consensus 2 ~Lak~GDSLvNfl~SlALse~lG~Ptg----------~rVPnaSLaiAl~~a~L~~~~~PR------------------- 52 (120)
T PF11469_consen 2 GLAKFGDSLVNFLFSLALSEYLGRPTG----------DRVPNASLAIALELAGLSHLLPPR------------------- 52 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-----------------HHHHHHHHHHTTGGGCS--C-------------------
T ss_pred cHHHHhHHHHHHHHHHHHHHHhCCCCC----------CCCCChHHHHHHHHHhhhhhCccc-------------------
Confidence 37789999999999888754 44432 246788888777777877765411
Q ss_pred cccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhhh
Q 017515 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194 (370)
Q Consensus 148 ~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~~ll~~ 194 (370)
....--+|..||+|+=.|+.+-+..+...++++.=+.+
T Consensus 53 ---------~dkh~kGd~aEA~iAyAWLeg~it~eEaveil~~nl~~ 90 (120)
T PF11469_consen 53 ---------TDKHGKGDIAEALIAYAWLEGKITIEEAVEILKANLTE 90 (120)
T ss_dssp ---------GGCCGHHHHHHHHHHHHHHTTSS-HHHHHHHHHCT--G
T ss_pred ---------ccccCccHHHHHHHHHHHHhccccHHHHHHHHHhcCch
Confidence 11234599999999999999988877655566544433
No 51
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=79.77 E-value=0.67 Score=45.10 Aligned_cols=67 Identities=22% Similarity=0.159 Sum_probs=58.2
Q ss_pred cCCchHHHHHHHHHhcCC-ceeEEEee-cCCeEEEEEEECCeeEEEEe-ccCHHHHHHHHHHHHHHHhhh
Q 017515 203 QQPQPVTLLFKLCQKNGK-QVDIKHWR-KNRKNIASVYVDGSFVASAS-SEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 203 ~~~~p~~~L~e~~~k~~~-~~~y~~~~-~~~~f~~~v~v~g~~~~~g~-g~skk~Ak~~AA~~AL~~L~~ 269 (370)
.+..|+..|.+||-+... .+.|++.+ .+..|...+..+|+.+-++. ..++|.|+|.||..+|+....
T Consensus 373 ~~~~~k~~l~~~~~~~~~~~~~ye~~~~~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l 442 (477)
T KOG2334|consen 373 KWDTPKMVLADLCVKTKANGPVYETVQRTDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNL 442 (477)
T ss_pred CCCCHHHHHHHhhhhhcCCCcchhhhhhhhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCc
Confidence 456899999999999988 67888887 78889999999999888887 579999999999999988754
No 52
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=67.41 E-value=2.9 Score=43.38 Aligned_cols=65 Identities=26% Similarity=0.298 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHhcCCCCCceE------EecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHH
Q 017515 292 AAKQKLHELCGKKKWPKPSYK------IEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRAL 363 (370)
Q Consensus 292 ~~ks~L~e~~~k~~~~~P~y~------~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l 363 (370)
|+-.++.-+=+.+. .-+|. ++.+.||.|.++|+++++++ .......|.+| |.|+=.||...|+..
T Consensus 371 d~nak~mhl~grRh--rLQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~----~~~~~a~gps~-~~~~wh~~~k~lq~~ 441 (816)
T KOG3792|consen 371 DPNAKEMHLKGRRH--RLQYKQKVDPDLVVDTKPSHRPRRTMEVRVN----GLPAEAEGPSK-KTAKWHAARKRLQNE 441 (816)
T ss_pred CcchHHhhhhcccc--cceeccccCCCceeccCCcccchhhhhhhhc----CCccccCCccc-ccchHHHHHHHhhcc
Confidence 45555555544443 23688 88899999999999999993 34556669999 999999999988765
No 53
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=59.15 E-value=28 Score=25.30 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=40.4
Q ss_pred ccCCccccChhhhHHHhhcCCCChhhHHHHHHHHHHcCc-ccCChhHHHHHhcCCCCCCCCCcchhhhhhHHHHHHHHHH
Q 017515 7 TLPRATVTDYRLLKEAMLTSLPSPEMEDAVFYVENIINY-NFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSN 85 (370)
Q Consensus 7 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy-~f~~~~Ll~~AlTh~s~~~~~~~erLe~LGdavL~~~v~~ 85 (370)
.-|..+|..++.+-+++...+|+..+. .+...-+.+-- +. .++-+.+-+. ...||.+|..++..
T Consensus 2 ~~P~sp~~~F~~L~~~l~~~l~~~~~~-~l~~~Y~~~k~~kI-sR~~fvr~lR-------------~IVGD~lL~s~I~~ 66 (70)
T PF12174_consen 2 RRPTSPWMPFPMLFSALSKHLPPSKMD-LLQKHYEEFKKKKI-SREEFVRKLR-------------QIVGDQLLRSAIKS 66 (70)
T ss_pred CCCCCCcccHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 358899999999999999999977764 34333322221 22 2223333322 25788888877765
Q ss_pred H
Q 017515 86 Y 86 (370)
Q Consensus 86 ~ 86 (370)
+
T Consensus 67 l 67 (70)
T PF12174_consen 67 L 67 (70)
T ss_pred h
Confidence 3
No 54
>PF00333 Ribosomal_S5: Ribosomal protein S5, N-terminal domain; InterPro: IPR013810 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S5 is one of the proteins from the small ribosomal subunit, and is a protein of 166 to 254 amino-acid residues. In Escherichia coli, S5 is known to be important in the assembly and function of the 30S ribosomal subunit. Mutations in S5 have been shown to increase translational error frequencies. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial, cyanelle, red algal chloroplast, archaeal and fungal mitochondrial S5; mammalian, Caenorhabditis elegans, Drosophila and plant S2; and yeast S4 (SUP44). This entry represents the N-terminal domain of ribosomal protein S5, which has an alpha-beta(3)-alpha structure that folds into two layers, alpha/beta.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZKQ_e 2XZN_E 2XZM_E 3O30_B 1S1H_E 3IZB_E 3U5C_C 3U5G_C 3O2Z_B 3BBN_E ....
Probab=56.28 E-value=29 Score=24.95 Aligned_cols=38 Identities=24% Similarity=0.080 Sum_probs=27.2
Q ss_pred eEEEEEEEC---Ce-eEEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515 232 KNIASVYVD---GS-FVASASSEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 232 ~f~~~v~v~---g~-~~~~g~g~skk~Ak~~AA~~AL~~L~~ 269 (370)
.|.+-|.++ |. -+|.|.+..-..|-++|..+|.+.|..
T Consensus 23 ~~~alvvvGn~~G~vG~G~gKa~~~~~Ai~kA~~~A~knl~~ 64 (67)
T PF00333_consen 23 SFRALVVVGNGNGLVGFGVGKAKEVPDAIRKAKRKAKKNLIY 64 (67)
T ss_dssp EEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHHCSEEE
T ss_pred EEEEEEEEecCCCcEecCcccchhHHHHHHHHHHHHHhCCEE
Confidence 455555553 32 367777888999999999999877643
No 55
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=43.67 E-value=21 Score=26.14 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=28.4
Q ss_pred HHHHHHHHHHCCCCCcchhhH-HHHHhcChHHHHHHHHHcChhHHH
Q 017515 81 LALSNYVFLAYPQLDPGQLSL-LRAANISTEKLARVAVKHGFYKFV 125 (370)
Q Consensus 81 ~~v~~~l~~~~p~~~~~~l~~-lr~~lvsn~~La~~a~~~gL~~~l 125 (370)
.-+++|+..+......-.++. .+..-||..++.++++++|+..|-
T Consensus 19 ~~Ia~yil~~~~~~~~~si~elA~~~~vS~sti~Rf~kkLG~~gf~ 64 (77)
T PF01418_consen 19 KKIADYILENPDEIAFMSISELAEKAGVSPSTIVRFCKKLGFSGFK 64 (77)
T ss_dssp HHHHHHHHH-HHHHCT--HHHHHHHCTS-HHHHHHHHHHCTTTCHH
T ss_pred HHHHHHHHhCHHHHHHccHHHHHHHcCCCHHHHHHHHHHhCCCCHH
Confidence 446667766543333323333 456789999999999999998874
No 56
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=38.94 E-value=49 Score=24.69 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=22.4
Q ss_pred eeEEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515 242 SFVASASSEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 242 ~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 269 (370)
..+|.|.|.+.+.|+++|-....+.+..
T Consensus 13 ~l~a~G~~~~~~~A~~~A~~~la~~i~~ 40 (92)
T PF02169_consen 13 YLYAVGSGSSREQAKQDALANLAEQISV 40 (92)
T ss_pred EEEEEEcccChHHHHHHHHHHHHHheeE
Confidence 4688999999988888888877776643
No 57
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=38.67 E-value=46 Score=24.86 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=22.9
Q ss_pred CeEEEeecCCCchhHHHHHHHHHHHHHHh
Q 017515 336 GVLFITGDEKSRVKDAENSAASMMLRALR 364 (370)
Q Consensus 336 ~~~~~~g~g~skkk~A~~~AA~~~l~~l~ 364 (370)
..+++.|.|.+. +.|+++|-..+-++|.
T Consensus 12 ~~l~a~G~~~~~-~~A~~~A~~~la~~i~ 39 (92)
T PF02169_consen 12 QYLYAVGSGSSR-EQAKQDALANLAEQIS 39 (92)
T ss_pred cEEEEEEcccCh-HHHHHHHHHHHHHhee
Confidence 457888999999 9999998888777653
No 58
>PF06754 PhnG: Phosphonate metabolism protein PhnG; InterPro: IPR009609 This family consists of several bacterial phosphonate metabolism protein PhnG sequences. In Escherichia coli, the phn operon encodes proteins responsible for the uptake and breakdown of phosphonates. The exact function of PhnG is unknown, however it is thought likely that along with six other proteins PhnG makes up the the C-P (carbon-phosphorus) lyase [].; GO: 0015716 phosphonate transport, 0019634 phosphonate metabolic process
Probab=37.69 E-value=1.9e+02 Score=24.24 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=26.3
Q ss_pred EEEEEEECCeeEEEE--eccCHHHHHHHHHHHHHHHh
Q 017515 233 NIASVYVDGSFVASA--SSEQKEIAKLNAAREALEKL 267 (370)
Q Consensus 233 f~~~v~v~g~~~~~g--~g~skk~Ak~~AA~~AL~~L 267 (370)
-.|.|.+++-..|.| .|.++.-|+..|-.+|+-.-
T Consensus 65 Tr~~V~l~~g~~G~~~v~G~d~~~A~~~Av~DAllq~ 101 (146)
T PF06754_consen 65 TRCAVRLEDGTVGYGYVLGRDKRHAELAAVIDALLQA 101 (146)
T ss_pred EEEEEEeCCCCEEEEEEcCCCHHHHHHHHHHHHHhCC
Confidence 356777874334555 49999999999999998653
No 59
>CHL00138 rps5 ribosomal protein S5; Validated
Probab=35.07 E-value=1.2e+02 Score=25.28 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=27.2
Q ss_pred eEEEEEEECCe--e--EEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 232 KNIASVYVDGS--F--VASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 232 ~f~~~v~v~g~--~--~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
.|.+-|.+++. . +|.|.+..-.+|.++|...|.+.|...
T Consensus 45 ~f~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknl~~V 87 (143)
T CHL00138 45 SFRAIVVIGNENGWVGVGVGKADDVQNAVKKAVTDAKKNLITI 87 (143)
T ss_pred EEEEEEEEECCCCeEEEeeEecchHHHHHHHHHHHHHhCeEEE
Confidence 45565666432 2 555666677899999999999988544
No 60
>TIGR01021 rpsE_bact ribosomal protein S5, bacterial/organelle type. This model finds chloroplast ribosomal protein S5 as well as bacterial ribosomal protein S5. A candidate mitochondrial form (Saccharomyces cerevisiae YBR251W and its homolog) differs substantially and is not included in this model.
Probab=34.41 E-value=1.1e+02 Score=25.80 Aligned_cols=39 Identities=18% Similarity=0.013 Sum_probs=27.8
Q ss_pred eEEEEEEECCe----eEEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 232 KNIASVYVDGS----FVASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 232 ~f~~~v~v~g~----~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
.|.+-|.+++. -+|.|.+..-..|.++|...|.+.|...
T Consensus 23 sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~kA~~~Ak~nl~~V 65 (154)
T TIGR01021 23 SFSALVVVGDGKGRVGFGFGKAKEVPDAIKKAVEKARKNLINV 65 (154)
T ss_pred EEEEEEEEECCCCeEeeeeeecchHHHHHHHHHHHHHhCeEEE
Confidence 45666666432 2556666777899999999999998654
No 61
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=33.19 E-value=1.1e+02 Score=26.86 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=27.7
Q ss_pred CcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhcCC
Q 017515 322 DKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTY 368 (370)
Q Consensus 322 ~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~~~ 368 (370)
.|.-++.+.- .|+++++| ++|. .+|+ .||+...+.|++.||
T Consensus 66 ~P~~ta~I~s---sGKi~ctg-A~se-~~ar-~aark~aRilqkLgf 106 (200)
T KOG3302|consen 66 SPRTTALIFS---SGKIVCTG-AKSE-DSAR-LAARKYARILQKLGF 106 (200)
T ss_pred CCceEEEEec---CCcEEEec-cCCH-HHHH-HHHHHHHHHHHHcCC
Confidence 3444555544 69999998 4676 5554 567777778877775
No 62
>PF04694 Corona_3: Coronavirus ORF3 protein; InterPro: IPR006784 This family represents the Coronavirus ORF3 protein, also known as the X2A protein.
Probab=31.00 E-value=1.1e+02 Score=20.75 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=22.8
Q ss_pred ceEEEEEEEec-CCeEEEeecCCCchhHHHHHHH
Q 017515 324 KFMSAVQIATT-DGVLFITGDEKSRVKDAENSAA 356 (370)
Q Consensus 324 ~f~~~v~v~~~-~~~~~~~g~g~skkk~A~~~AA 356 (370)
-|.++..|... +.-.++.|.|-+- -+|++.|-
T Consensus 22 yfavtlkvef~tgkllVcigFGDTl-~~A~~kay 54 (60)
T PF04694_consen 22 YFAVTLKVEFKTGKLLVCIGFGDTL-FEAEQKAY 54 (60)
T ss_pred eEEEEEEEEEecCcEEEEEecchHH-HHHHHhhh
Confidence 46666665543 3457899999998 88888764
No 63
>PF02482 Ribosomal_S30AE: Sigma 54 modulation protein / S30EA ribosomal protein; InterPro: IPR003489 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the sigma-54 modulation protein family and the S30Ae family of ribosomal proteins which includes the light-repressed protein (lrtA) [].; GO: 0005488 binding, 0044238 primary metabolic process; PDB: 1L4S_A 1VOX_a 1VOV_a 3V2E_Y 3V2C_Y 1N3G_A 1VOS_a 1VOZ_a 1VOQ_a 1IMU_A ....
Probab=29.58 E-value=1.8e+02 Score=21.81 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=35.5
Q ss_pred CCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 319 PSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 319 ~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
+.....|.|++++..+++.+.+.+.+.+- ..|=..|...+-.+|++
T Consensus 44 ~~~~~~~~v~i~i~~~~~~l~a~~~~~d~-~~Aid~a~dkl~rql~k 89 (97)
T PF02482_consen 44 KSEGKGYRVEITIHVPGHVLVAEESAEDL-YAAIDEAFDKLERQLRK 89 (97)
T ss_dssp --ETTEEEEEEEEEETTEEEEEEEEESSH-HHHHHHHHHHHHHHHHH
T ss_pred eccCCCEEEEEEEEeCCceEEEEEecCCH-HHHHHHHHHHHHHHHHH
Confidence 44568899999998777789999999888 77777777777766653
No 64
>PRK00550 rpsE 30S ribosomal protein S5; Validated
Probab=28.87 E-value=1.6e+02 Score=25.38 Aligned_cols=40 Identities=15% Similarity=0.028 Sum_probs=28.4
Q ss_pred eEEEEEEECCe--e--EEEEeccCHHHHHHHHHHHHHHHhhhcC
Q 017515 232 KNIASVYVDGS--F--VASASSEQKEIAKLNAAREALEKLAQSM 271 (370)
Q Consensus 232 ~f~~~v~v~g~--~--~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 271 (370)
.|.+-|.+++. . +|.|.+..-..|.++|...|.+.|....
T Consensus 34 ~f~alvvvGn~~G~vG~G~gKa~ev~~Ai~kA~~~A~~nl~~V~ 77 (168)
T PRK00550 34 SFSALVVVGDGKGRVGFGYGKAREVPEAIRKAVEDAKKNMIKVP 77 (168)
T ss_pred EEEEEEEEECCCCeEeeeeeecchHHHHHHHHHHHHHhCEEEEe
Confidence 46666666432 2 5556667778999999999999986543
No 65
>PF04098 Rad52_Rad22: Rad52/22 family double-strand break repair protein; InterPro: IPR007232 The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to Rad52. These proteins contain two helix-hairpin-helix motifs [].; GO: 0006281 DNA repair, 0006310 DNA recombination; PDB: 1KN0_I 1H2I_U.
Probab=27.95 E-value=3.2e+02 Score=22.91 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhcCCceeEEEe
Q 017515 207 PVTLLFKLCQKNGKQVDIKHW 227 (370)
Q Consensus 207 p~~~L~e~~~k~~~~~~y~~~ 227 (370)
-+..+++.+--.||..++...
T Consensus 38 vi~~aN~vfGfngWs~~i~~~ 58 (154)
T PF04098_consen 38 VIELANEVFGFNGWSSEIISL 58 (154)
T ss_dssp HHHHHHHHH-TTTEEEEEEEE
T ss_pred HHHHHHHHhCcCCCceEEEee
Confidence 356777888788886655443
No 66
>PF04098 Rad52_Rad22: Rad52/22 family double-strand break repair protein; InterPro: IPR007232 The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to Rad52. These proteins contain two helix-hairpin-helix motifs [].; GO: 0006281 DNA repair, 0006310 DNA recombination; PDB: 1KN0_I 1H2I_U.
Probab=26.45 E-value=1.3e+02 Score=25.32 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=14.5
Q ss_pred hhhhHHHHHHHHHHhcCCCC
Q 017515 289 EIEAAKQKLHELCGKKKWPK 308 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~ 308 (370)
+...-...+++++--++|..
T Consensus 34 ~~~~vi~~aN~vfGfngWs~ 53 (154)
T PF04098_consen 34 ESRKVIELANEVFGFNGWSS 53 (154)
T ss_dssp -HHHHHHHHHHHH-TTTEEE
T ss_pred CHHHHHHHHHHHhCcCCCce
Confidence 34567788999999999875
No 67
>PF02624 YcaO: YcaO-like family; InterPro: IPR003776 This domain comprises the whole of a protein in Methanocaldococcus jannaschii (Methanococcus jannaschii) and Methanobacterium thermoautotrophicum, all but the N-terminal 60 residues from a protein of Mycobacterium tuberculosis, and all but the C-terminal 180 residues from a protein in Haemophilus influenzae and Escherichia coli, among proteins from published complete genomes.
Probab=26.08 E-value=5.5e+02 Score=24.02 Aligned_cols=52 Identities=15% Similarity=0.038 Sum_probs=33.5
Q ss_pred cCCceeEEEee-cCCeEEEEEEE--C-----CeeEEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515 218 NGKQVDIKHWR-KNRKNIASVYV--D-----GSFVASASSEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 218 ~~~~~~y~~~~-~~~~f~~~v~v--~-----g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 269 (370)
.+..+.+.... ..+..++.+.+ . ...+|.|.+.+...|-.+|-..+++.+..
T Consensus 171 ~~~~v~l~dit~~~~vpv~~a~~~~~~~~~~~~~~G~ga~~~~~~Al~rAl~E~~q~~~~ 230 (332)
T PF02624_consen 171 AGLEVRLFDITNDFGVPVVAAVLRNEDKDRPYYAVGAGAHLDPEEALERALTEAAQSRLL 230 (332)
T ss_pred CceEEEEEECCCCCCceEEEEEEEecCCCCcceEEEeccCCCHHHHHHHHHHHHHHHHHH
Confidence 55555433333 33445555555 2 23577888899999999999988877653
No 68
>TIGR00741 yfiA ribosomal subunit interface protein. The member of this family from E. coli is now recognized as a protein at the interace between ribosomal large and small subunits, with about 1/3 as many copies per cell as the number of ribosomes.
Probab=25.98 E-value=2.7e+02 Score=20.77 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=33.3
Q ss_pred ceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 324 KFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 324 ~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
.|.|++++..+++.+.+.+.+..- -.|=..|+..+-++|++
T Consensus 47 ~~~~~i~v~~~g~~l~a~~~~~d~-~~Aid~a~~klerql~k 87 (95)
T TIGR00741 47 RFKVEATIYTPGGVIRASAEHEDM-YAAIDLAIDKLERQLRK 87 (95)
T ss_pred ceEEEEEEEcCCCEEEEEEecCcH-HHHHHHHHHHHHHHHHH
Confidence 489999988878889999998887 77877888777777753
No 69
>COG3624 PhnG Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=25.85 E-value=3.8e+02 Score=22.32 Aligned_cols=33 Identities=27% Similarity=0.256 Sum_probs=24.6
Q ss_pred EEEEEECC--eeEEEEe--ccCHHHHHHHHHHHHHHH
Q 017515 234 IASVYVDG--SFVASAS--SEQKEIAKLNAAREALEK 266 (370)
Q Consensus 234 ~~~v~v~g--~~~~~g~--g~skk~Ak~~AA~~AL~~ 266 (370)
.++|.+.+ ..+|.|. |.+|+-|+..|-.+||..
T Consensus 69 Ra~VrL~~~~~~vGh~yv~Grdk~~AelaAi~DALlQ 105 (151)
T COG3624 69 RATVRLEDGTGTVGHGYVLGRDKRHAELAALIDALLQ 105 (151)
T ss_pred EEEEEccCCCcccceeeeecCChhHhHHHHHHHHHhc
Confidence 35666654 2466554 999999999999999854
No 70
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=25.29 E-value=37 Score=20.95 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=8.8
Q ss_pred HHHHHHHHHH
Q 017515 163 ADIVESIAAA 172 (370)
Q Consensus 163 ad~feAliGA 172 (370)
.|++||+||+
T Consensus 26 EDAvEaLi~~ 35 (35)
T PF08383_consen 26 EDAVEALIGN 35 (35)
T ss_pred HHHHHHHhcC
Confidence 7999999984
No 71
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=24.61 E-value=2.4e+02 Score=24.35 Aligned_cols=42 Identities=24% Similarity=0.307 Sum_probs=28.3
Q ss_pred CcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhcCCC
Q 017515 322 DKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTYL 369 (370)
Q Consensus 322 ~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~~~~ 369 (370)
.|.-++.+-. +|+.+++| ++|. .+|+. |++..++.|++.|+-
T Consensus 45 ~Pk~t~lIF~---SGKiviTG-aks~-e~a~~-a~~~i~~~L~~~g~~ 86 (174)
T cd04516 45 EPKTTALIFS---SGKMVCTG-AKSE-DDSKL-AARKYARIIQKLGFP 86 (174)
T ss_pred CCcEEEEEEC---CCeEEEEe-cCCH-HHHHH-HHHHHHHHHHHcCCC
Confidence 4444544444 79999999 4666 56655 567777888887763
No 72
>PRK14741 spoVM stage V sporulation protein M; Provisional
Probab=23.97 E-value=78 Score=17.84 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=15.5
Q ss_pred cCCchHHHHHHHHHHHHH
Q 017515 156 IKAPKVLADIVESIAAAI 173 (370)
Q Consensus 156 ~~~~k~lad~feAliGAI 173 (370)
.+.||.++.++.|++|+.
T Consensus 6 iklpkflgg~vra~l~~f 23 (26)
T PRK14741 6 IKLPKFLGGIVRAMLGSF 23 (26)
T ss_pred EeccHHHHHHHHHHHHHh
Confidence 456999999999999984
No 73
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=23.73 E-value=2.1e+02 Score=18.44 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=12.9
Q ss_pred CCCchhHHHHHHHHHHHHHHhh
Q 017515 344 EKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 344 g~skkk~A~~~AA~~~l~~l~~ 365 (370)
..|| ++|+..+++ ++..+.+
T Consensus 24 F~Tk-keA~~~~~~-~~~~~~~ 43 (46)
T PF14657_consen 24 FKTK-KEAEKALAK-IEAELEN 43 (46)
T ss_pred CCcH-HHHHHHHHH-HHHHHHc
Confidence 4666 999887776 4444443
No 74
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=22.70 E-value=99 Score=19.88 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=15.9
Q ss_pred CCCCCcchhhHHHHHhcChHHHHHHHHHcChhHH
Q 017515 91 YPQLDPGQLSLLRAANISTEKLARVAVKHGFYKF 124 (370)
Q Consensus 91 ~p~~~~~~l~~lr~~lvsn~~La~~a~~~gL~~~ 124 (370)
|+.++..+-..+...+-.+..+..+|..+|.+.-
T Consensus 2 ~~~Lt~~eR~~I~~l~~~G~s~~~IA~~lg~s~s 35 (44)
T PF13936_consen 2 YKHLTPEERNQIEALLEQGMSIREIAKRLGRSRS 35 (44)
T ss_dssp ----------HHHHHHCS---HHHHHHHTT--HH
T ss_pred ccchhhhHHHHHHHHHHcCCCHHHHHHHHCcCcH
Confidence 5667777777777778888999999999997764
No 75
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=20.58 E-value=86 Score=29.41 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=25.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHCCCCCcchh
Q 017515 70 RLEFIGDAALGLALSNYVFLAYPQLDPGQL 99 (370)
Q Consensus 70 rLe~LGdavL~~~v~~~l~~~~p~~~~~~l 99 (370)
|+..|||.|+..-+...|.++||+..-..+
T Consensus 6 r~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l 35 (319)
T TIGR02193 6 KTSSLGDVIHTLPALTDIKRALPDVEIDWV 35 (319)
T ss_pred ecccHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 577899999999999999999998654433
No 76
>PRK04044 rps5p 30S ribosomal protein S5P; Reviewed
Probab=20.49 E-value=2.5e+02 Score=25.15 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=26.4
Q ss_pred eEEEEEEECCe--e--EEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 232 KNIASVYVDGS--F--VASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 232 ~f~~~v~v~g~--~--~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
.|.+-|.+++. . +|.|.+..-..|.++|..+|.+.|...
T Consensus 71 sf~alVvVGn~~G~vG~G~GKa~ev~~Ai~kA~~~Akknli~V 113 (211)
T PRK04044 71 RFRVVVVVGNRDGYVGVGQGKAKQVGPAIRKAIRNAKLNIIKV 113 (211)
T ss_pred EEEEEEEEeCCCCeEeeeeeeccchHHHHHHHHHHHHhCeEEE
Confidence 45666666432 3 445555566789999999999888554
Done!