Query 017515
Match_columns 370
No_of_seqs 255 out of 2022
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 15:40:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nug_A Ribonuclease III, RNAse 100.0 1.5E-50 5.2E-55 364.9 21.4 217 35-366 3-220 (221)
2 3n3w_A Ribonuclease III; nucle 100.0 2E-51 6.8E-56 375.6 11.4 221 35-365 27-247 (248)
3 1o0w_A Ribonuclease III, RNAse 100.0 3.3E-49 1.1E-53 362.6 19.2 224 32-365 17-249 (252)
4 3c4b_A Endoribonuclease dicer; 100.0 2.2E-47 7.4E-52 353.7 24.3 232 35-269 14-263 (265)
5 2a11_A Ribonuclease III, RNAse 100.0 1E-48 3.5E-53 357.7 7.8 221 35-367 6-233 (242)
6 3rv0_A K. polysporus DCR1; RNA 100.0 2.4E-45 8.2E-50 347.9 10.9 216 37-270 86-321 (341)
7 3o2r_A Ribonuclease III; struc 100.0 1.4E-35 4.8E-40 254.8 12.2 142 35-197 27-168 (170)
8 3rv1_A K. polysporus DCR1; RNA 100.0 2.9E-33 9.9E-38 252.6 12.4 144 37-198 86-242 (246)
9 1qu6_A Protein kinase PKR; dsR 100.0 9.5E-30 3.2E-34 221.3 13.4 155 204-365 12-172 (179)
10 2qvw_A GLP_546_48378_50642; di 99.9 5.5E-28 1.9E-32 250.1 13.1 134 34-198 593-754 (756)
11 2yt4_A Protein DGCR8; DSRBD, R 99.9 5E-27 1.7E-31 211.7 16.1 154 204-365 21-198 (232)
12 2qvw_A GLP_546_48378_50642; di 99.9 2.3E-28 7.9E-33 252.9 7.3 164 58-271 324-499 (756)
13 2l3j_A Double-stranded RNA-spe 99.9 5E-23 1.7E-27 186.3 19.0 153 205-369 4-229 (236)
14 3adj_A F21M12.9 protein; HYL1, 99.8 2.3E-20 7.8E-25 138.7 9.4 73 290-366 3-75 (76)
15 1u61_A Hypothetical protein; s 99.8 3.1E-20 1E-24 152.4 10.9 107 65-193 9-127 (138)
16 3adg_A F21M12.9 protein; HYL1, 99.8 1.7E-19 6E-24 133.0 9.2 69 291-364 3-72 (73)
17 1di2_A XLRBPA, double stranded 99.8 1.3E-19 4.3E-24 132.2 8.3 68 293-365 2-69 (69)
18 2cpn_A TAR RNA-binding protein 99.8 1.4E-19 4.9E-24 138.1 8.6 74 288-366 13-86 (89)
19 3adl_A RISC-loading complex su 99.8 2.3E-19 7.7E-24 136.6 8.8 73 289-366 13-85 (88)
20 1ekz_A DSRBDIII, maternal effe 99.8 1.2E-19 4.2E-24 134.9 5.6 71 289-365 5-75 (76)
21 1uhz_A Staufen (RNA binding pr 99.8 3.9E-19 1.3E-23 135.7 8.3 71 290-365 5-75 (89)
22 2dix_A Interferon-inducible do 99.8 1E-18 3.4E-23 132.2 9.8 72 289-366 6-77 (84)
23 3llh_A RISC-loading complex su 99.8 5.2E-19 1.8E-23 135.6 8.0 76 288-369 11-86 (90)
24 2khx_A Ribonuclease 3; drosha, 99.8 2.4E-19 8E-24 135.7 5.2 72 291-366 1-77 (85)
25 2l2n_A Hyponastic leave 1; DSR 99.8 1.6E-18 5.3E-23 136.1 8.2 75 288-367 14-89 (103)
26 2gsl_A Hypothetical protein; a 99.8 1.5E-18 5.1E-23 142.0 7.8 109 65-196 12-130 (137)
27 1x49_A Interferon-induced, dou 99.7 1.4E-18 4.8E-23 134.7 6.2 73 289-366 12-84 (97)
28 1whq_A RNA helicase A; double- 99.7 1.7E-18 5.7E-23 134.7 6.4 73 290-368 5-78 (99)
29 1uil_A Double-stranded RNA-bin 99.7 6.9E-18 2.4E-22 134.4 9.1 79 288-369 23-103 (113)
30 2b7t_A Double-stranded RNA-spe 99.7 4.6E-18 1.6E-22 125.2 7.2 68 291-365 4-71 (73)
31 1t4n_A Ribonuclease III; DSRBD 99.7 1.1E-17 3.6E-22 127.6 6.8 69 290-364 5-74 (94)
32 1x48_A Interferon-induced, dou 99.7 4.2E-17 1.4E-21 124.2 8.4 70 290-366 5-75 (88)
33 2dmy_A Spermatid perinuclear R 99.7 3.1E-17 1.1E-21 127.3 7.5 69 289-364 14-82 (97)
34 1x47_A DGCR8 protein; structur 99.7 5.8E-17 2E-21 125.9 9.0 71 289-365 14-84 (98)
35 2l33_A Interleukin enhancer-bi 99.7 3.4E-17 1.2E-21 124.9 6.5 69 291-366 14-82 (91)
36 1t4o_A Ribonuclease III; RNT1P 99.7 5.6E-17 1.9E-21 127.9 6.7 69 290-364 7-76 (117)
37 2ljh_A Double-stranded RNA-spe 99.7 1.1E-16 3.9E-21 126.8 7.4 70 289-368 35-104 (114)
38 1whn_A Hypothetical protein ri 99.6 4E-16 1.4E-20 126.5 8.7 69 289-364 24-93 (128)
39 2b7v_A Double-stranded RNA-spe 99.6 3.7E-16 1.3E-20 114.4 7.6 68 290-367 3-70 (71)
40 1qu6_A Protein kinase PKR; dsR 99.6 1.1E-15 3.7E-20 132.5 6.3 72 290-366 12-83 (179)
41 3adl_A RISC-loading complex su 99.6 1.4E-14 4.9E-19 110.0 10.3 67 204-271 14-86 (88)
42 3adj_A F21M12.9 protein; HYL1, 99.6 1.1E-14 3.8E-19 107.8 8.3 65 205-269 4-74 (76)
43 3p1x_A Interleukin enhancer-bi 99.6 6.4E-15 2.2E-19 108.7 7.0 68 289-366 5-72 (75)
44 1di2_A XLRBPA, double stranded 99.6 2E-14 7E-19 104.5 9.5 62 206-268 1-68 (69)
45 3adg_A F21M12.9 protein; HYL1, 99.5 2.4E-14 8.1E-19 105.3 8.9 64 205-268 3-72 (73)
46 3llh_A RISC-loading complex su 99.5 3E-14 1E-18 108.9 9.7 68 203-271 12-84 (90)
47 2dix_A Interferon-inducible do 99.5 3.7E-14 1.3E-18 107.0 9.7 66 204-270 7-77 (84)
48 1x48_A Interferon-induced, dou 99.5 7.7E-14 2.6E-18 106.1 11.4 70 204-274 5-79 (88)
49 2cpn_A TAR RNA-binding protein 99.5 6E-14 2.1E-18 106.9 10.4 66 204-270 15-86 (89)
50 1x49_A Interferon-induced, dou 99.5 2.9E-14 1E-18 110.3 8.6 69 204-272 13-86 (97)
51 1uhz_A Staufen (RNA binding pr 99.5 9E-14 3.1E-18 105.9 10.0 65 204-269 5-75 (89)
52 1ekz_A DSRBDIII, maternal effe 99.5 1.3E-14 4.3E-19 107.6 4.9 65 204-269 6-75 (76)
53 2khx_A Ribonuclease 3; drosha, 99.5 2.6E-14 9E-19 107.9 5.6 66 205-270 1-77 (85)
54 1x47_A DGCR8 protein; structur 99.5 2.3E-13 7.8E-18 105.6 10.3 67 204-270 15-85 (98)
55 2yt4_A Protein DGCR8; DSRBD, R 99.5 9.9E-14 3.4E-18 124.8 9.1 71 289-365 20-90 (232)
56 1t4n_A Ribonuclease III; DSRBD 99.5 8.3E-14 2.8E-18 106.1 6.4 64 205-268 6-74 (94)
57 1whq_A RNA helicase A; double- 99.4 2E-13 6.7E-18 106.0 8.4 68 204-271 5-77 (99)
58 2b7t_A Double-stranded RNA-spe 99.4 4.2E-13 1.4E-17 98.5 9.5 63 205-269 4-71 (73)
59 2l2n_A Hyponastic leave 1; DSR 99.4 2.2E-13 7.6E-18 106.6 8.2 69 203-271 15-89 (103)
60 2l33_A Interleukin enhancer-bi 99.4 7.3E-13 2.5E-17 100.9 9.1 67 205-273 14-85 (91)
61 1whn_A Hypothetical protein ri 99.4 6.3E-13 2.2E-17 107.7 9.0 68 203-270 24-95 (128)
62 1uil_A Double-stranded RNA-bin 99.4 9.1E-13 3.1E-17 104.8 9.3 68 205-272 26-102 (113)
63 1t4o_A Ribonuclease III; RNT1P 99.4 5.3E-13 1.8E-17 105.2 7.5 65 204-268 7-76 (117)
64 2dmy_A Spermatid perinuclear R 99.4 1.6E-12 5.6E-17 100.6 9.5 64 204-269 15-83 (97)
65 2ljh_A Double-stranded RNA-spe 99.3 3E-12 1E-16 101.4 8.2 63 204-271 36-103 (114)
66 2b7v_A Double-stranded RNA-spe 99.3 1.4E-11 4.8E-16 89.9 8.8 62 204-270 3-69 (71)
67 2l3j_A Double-stranded RNA-spe 99.2 2.5E-11 8.5E-16 109.5 8.0 68 291-365 4-71 (236)
68 3p1x_A Interleukin enhancer-bi 99.2 9.4E-11 3.2E-15 86.3 8.9 62 204-270 6-72 (75)
69 1o0w_A Ribonuclease III, RNAse 99.2 7.4E-11 2.5E-15 107.6 9.1 65 206-270 180-250 (252)
70 2nug_A Ribonuclease III, RNAse 99.2 7.1E-11 2.4E-15 105.6 8.8 63 206-269 151-219 (221)
71 3rv0_A K. polysporus DCR1; RNA 99.0 4.1E-11 1.4E-15 113.3 0.0 68 289-365 252-320 (341)
72 3n3w_A Ribonuclease III; nucle 99.0 6E-11 2E-15 107.8 0.0 64 206-269 178-247 (248)
73 2a11_A Ribonuclease III, RNAse 98.9 1.3E-10 4.3E-15 105.4 0.0 66 206-271 163-233 (242)
74 3c4b_A Endoribonuclease dicer; 98.6 2.2E-08 7.4E-13 91.9 5.7 68 292-367 198-265 (265)
75 2kou_A Dicer-like protein 4; A 97.3 0.00038 1.3E-08 53.8 5.8 74 291-369 4-84 (102)
76 2kou_A Dicer-like protein 4; A 95.5 0.048 1.6E-06 41.8 7.6 65 205-271 4-82 (102)
77 2db2_A KIAA0890 protein; DSRM 94.6 0.045 1.5E-06 41.9 4.7 73 292-369 18-93 (119)
78 2db2_A KIAA0890 protein; DSRM 92.8 1.1 3.6E-05 34.3 9.5 69 203-271 15-91 (119)
79 3htx_A HEN1; HEN1, small RNA m 91.0 0.36 1.2E-05 50.5 6.8 64 206-272 18-98 (950)
80 3htx_A HEN1; HEN1, small RNA m 89.9 0.24 8.4E-06 51.7 4.5 66 291-364 17-94 (950)
81 1ztd_A Hypothetical protein PF 83.3 5.1 0.00017 30.5 7.4 87 67-192 11-99 (133)
82 2l6m_A Protein dicer; DSRBD, h 43.2 1E+02 0.0034 23.0 9.4 65 205-269 23-104 (121)
83 2gjh_A Designed protein; oblig 36.5 32 0.0011 22.0 3.0 24 343-368 9-32 (62)
84 3iwf_A Transcription regulator 35.6 20 0.0007 27.1 2.4 44 80-125 19-65 (107)
85 3k6q_A Putative ligand binding 33.3 1.7E+02 0.0058 23.2 7.4 56 208-268 41-96 (139)
86 2o3f_A Putative HTH-type trans 27.9 22 0.00074 27.0 1.4 44 80-125 23-69 (111)
87 3bid_A UPF0339 protein NMB1088 21.7 1.9E+02 0.0066 19.5 6.1 43 224-270 3-47 (64)
No 1
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=100.00 E-value=1.5e-50 Score=364.89 Aligned_cols=217 Identities=32% Similarity=0.446 Sum_probs=194.0
Q ss_pred HHHHHHHHcCcccCChhHHHHHhcCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHHH
Q 017515 35 AVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114 (370)
Q Consensus 35 ~~~~le~~lgy~f~~~~Ll~~AlTh~s~~~~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La~ 114 (370)
.+..|+++|||+|+|++||.+||||+|+....+|||||||||+||++++++|||.+||+.++|.|+.+|+.+||+.+|+.
T Consensus 3 ~~~~l~~~lg~~f~~~~ll~~AlTh~S~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la~ 82 (221)
T 2nug_A 3 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNL 82 (221)
T ss_dssp CHHHHHHHHTCCCSSHHHHHHHHBCTTTCSSSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHhCCCcCCHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHH
Confidence 35789999999999999999999999998767999999999999999999999999999999999999999999999999
Q ss_pred HHHHcChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhhh
Q 017515 115 VAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194 (370)
Q Consensus 115 ~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~~ll~~ 194 (370)
+|.++||++|++.++.. ..+++++|+|||+|||||+|+|++.+.+++|+..++.|
T Consensus 83 ~a~~l~l~~~l~~~~~~-------------------------~~~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~~~~ 137 (221)
T 2nug_A 83 LAQKLELHKFIRIKRGK-------------------------INETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKE 137 (221)
T ss_dssp HHHTTTGGGTCBSCTTC-------------------------CCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHcChHHhhccCCCc-------------------------ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999887432 12899999999999999999999985566889988887
Q ss_pred hhh-hhhhccCCchHHHHHHHHHhcCCceeEEEeecCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCCC
Q 017515 195 IVT-LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPV 273 (370)
Q Consensus 195 ~i~-~~~~~~~~~p~~~L~e~~~k~~~~~~y~~~~~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~ 273 (370)
.++ .....
T Consensus 138 ~~~~~~~~~----------------------------------------------------------------------- 146 (221)
T 2nug_A 138 DILSAIKEG----------------------------------------------------------------------- 146 (221)
T ss_dssp HHHHHHHTT-----------------------------------------------------------------------
T ss_pred HHhhhhhcc-----------------------------------------------------------------------
Confidence 765 32110
Q ss_pred cccccccccCCchhhhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHH
Q 017515 274 NCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAEN 353 (370)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~ 353 (370)
....|||+.||||||++++..|.|.++.++||+|.+.|+|+|.| +|. ++.|.|+|| |+|||
T Consensus 147 --------------~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v---~~~-~~~G~G~sk-K~Ae~ 207 (221)
T 2nug_A 147 --------------RVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKI---KEY-RTLGEGKSK-KEAEQ 207 (221)
T ss_dssp --------------CSCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEE---TTE-EEEEEESSH-HHHHH
T ss_pred --------------ccccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEE---CCE-EEEEecCCH-HHHHH
Confidence 01348999999999999999999999989999999999999999 688 999999999 99999
Q ss_pred HHHHHHHHHHhhc
Q 017515 354 SAASMMLRALRES 366 (370)
Q Consensus 354 ~AA~~~l~~l~~~ 366 (370)
.||+.||..|+++
T Consensus 208 ~AA~~AL~~L~~~ 220 (221)
T 2nug_A 208 RAAEELIKLLEES 220 (221)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHhhcc
Confidence 9999999999754
No 2
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=100.00 E-value=2e-51 Score=375.63 Aligned_cols=221 Identities=33% Similarity=0.470 Sum_probs=127.8
Q ss_pred HHHHHHHHcCcccCChhHHHHHhcCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHHH
Q 017515 35 AVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114 (370)
Q Consensus 35 ~~~~le~~lgy~f~~~~Ll~~AlTh~s~~~~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La~ 114 (370)
.+..||++|||+|+|++||.+||||+|+....+|||||||||+||+++|++|||.+||+.++|.|+.+|+.+|||.+|+.
T Consensus 27 ~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~lVs~~~La~ 106 (248)
T 3n3w_A 27 NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAK 106 (248)
T ss_dssp THHHHHHHHTCCCSSHHHHHHHTBCTTSBTTBCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHhcCcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHH
Confidence 47899999999999999999999999998768999999999999999999999999999999999999999999999999
Q ss_pred HHHHcChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhhh
Q 017515 115 VAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194 (370)
Q Consensus 115 ~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~~ll~~ 194 (370)
+|.++||++||+.++.+. ..++ ...+++++|+|||+|||||+|+|++. +++|+..++.|
T Consensus 107 ~a~~lgL~~~l~~~~~e~------------------~~~g-~~~~~~lad~fEAliGAiyld~G~~~--~~~~i~~~~~~ 165 (248)
T 3n3w_A 107 IANSLNLGDFILMSVAEE------------------NNGG-KEKPSILSDALEAIIGAIHLEAGFEF--AKTIALRLIEK 165 (248)
T ss_dssp HHHHTTGGGTCBCCHHHH------------------HTTG-GGCHHHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHH
T ss_pred HHHHcCcHHHhhcCchhh------------------hcCC-CCCccHHHHHHHHHHHHHHHHCChHH--HHHHHHHHHHH
Confidence 999999999999876431 1222 45689999999999999999999764 55889999888
Q ss_pred hhhhhhhccCCchHHHHHHHHHhcCCceeEEEeecCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCCCc
Q 017515 195 IVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVN 274 (370)
Q Consensus 195 ~i~~~~~~~~~~p~~~L~e~~~k~~~~~~y~~~~~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~ 274 (370)
.++.....
T Consensus 166 ~l~~~~~~------------------------------------------------------------------------ 173 (248)
T 3n3w_A 166 NFPQIDAK------------------------------------------------------------------------ 173 (248)
T ss_dssp HCC-----------------------------------------------------------------------------
T ss_pred HHHHhhcc------------------------------------------------------------------------
Confidence 76432110
Q ss_pred ccccccccCCchhhhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHH
Q 017515 275 CDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENS 354 (370)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~ 354 (370)
....|||+.||||||++++..|.|+++.++||+|.+.|+|+|.| +|+.++.|.|+|| |+|||.
T Consensus 174 -------------~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v---~g~~~~~G~G~SK-K~Aeq~ 236 (248)
T 3n3w_A 174 -------------ILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALML---DGKELARAIAGSK-KEAQQM 236 (248)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------ccccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEE---CCEEEEEeeeCCH-HHHHHH
Confidence 13458999999999999999999999989999999999999999 5889999999999 999999
Q ss_pred HHHHHHHHHhh
Q 017515 355 AASMMLRALRE 365 (370)
Q Consensus 355 AA~~~l~~l~~ 365 (370)
||+.||+.|++
T Consensus 237 AA~~AL~~L~~ 247 (248)
T 3n3w_A 237 AAKIALEKLGA 247 (248)
T ss_dssp -----------
T ss_pred HHHHHHHHHHc
Confidence 99999999875
No 3
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=100.00 E-value=3.3e-49 Score=362.58 Aligned_cols=224 Identities=30% Similarity=0.420 Sum_probs=196.3
Q ss_pred hHHHHHHHHHHcCcccCChhHHHHHhcCCCCCC----CC-----CcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHH
Q 017515 32 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTD----ST-----SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLL 102 (370)
Q Consensus 32 ~~~~~~~le~~lgy~f~~~~Ll~~AlTh~s~~~----~~-----~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~l 102 (370)
....+..|+++|||+|+|++||.+||||+|+.. .. +|||||||||+||+++|++|||.+||+.++|.|+.+
T Consensus 17 ~~~~~~~l~~~lgy~f~~~~LL~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~l~v~~~L~~~~p~~~eg~Ls~~ 96 (252)
T 1o0w_A 17 ERKIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARV 96 (252)
T ss_dssp HHHHHHHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred cHHHHHHHHHHHCCCCCCHHHHHHHhCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 346889999999999999999999999999864 23 899999999999999999999999999999999999
Q ss_pred HHHhcChHHHHHHHHHcChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChH
Q 017515 103 RAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQ 182 (370)
Q Consensus 103 r~~lvsn~~La~~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~ 182 (370)
|+.+||+.+|+.+|.++||++|++.+..+. ..++ ...+++++|+|||+|||||+|+|++
T Consensus 97 r~~lV~~~~la~~a~~lgL~~~l~~~~~e~------------------~~~~-~~~~~~lad~~EAliGAiyld~g~~-- 155 (252)
T 1o0w_A 97 KSAAASEEVLAMVSRKMNLGKFLFLGKGEE------------------KTGG-RDRDSILADAFEALLAAIYLDQGYE-- 155 (252)
T ss_dssp HHHHTSHHHHHHHHHHTTHHHHCBCCHHHH------------------HTTG-GGCHHHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHhCHHHHHHHHHHcCcHHhhccCchhh------------------hcCC-CCCccHHHhHHHHHHHHHHHcCCHH--
Confidence 999999999999999999999999875421 1222 4568999999999999999999975
Q ss_pred HHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHhcCCceeEEEeecCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHH
Q 017515 183 KLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAARE 262 (370)
Q Consensus 183 ~~~~v~~~ll~~~i~~~~~~~~~~p~~~L~e~~~k~~~~~~y~~~~~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~ 262 (370)
.+++|+..++.|.++.....
T Consensus 156 ~~~~~i~~~~~~~~~~~~~~------------------------------------------------------------ 175 (252)
T 1o0w_A 156 KIKELFEQEFEFYIEKIMKG------------------------------------------------------------ 175 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHTT------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhc------------------------------------------------------------
Confidence 45588998888876532100
Q ss_pred HHHHhhhcCCCcccccccccCCchhhhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEee
Q 017515 263 ALEKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITG 342 (370)
Q Consensus 263 AL~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g 342 (370)
....|||+.||||||+++++.|.|.++.++||+|.+.|+|+|.| +|+.++.|
T Consensus 176 -------------------------~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v---~g~~~~~G 227 (252)
T 1o0w_A 176 -------------------------EMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRV---NGKTIATG 227 (252)
T ss_dssp -------------------------CCCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEE---TTEEEEEE
T ss_pred -------------------------ccccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEE---CCEEEEEE
Confidence 02348999999999999999999999988999999999999999 78999999
Q ss_pred cCCCchhHHHHHHHHHHHHHHhh
Q 017515 343 DEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 343 ~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
.|+|| |+|||.||+.||..|..
T Consensus 228 ~G~SK-K~Aeq~AA~~AL~~L~~ 249 (252)
T 1o0w_A 228 KGRTK-KEAEKEAARIAYEKLLK 249 (252)
T ss_dssp EESSH-HHHHHHHHHHHHHHHC-
T ss_pred eeCCH-HHHHHHHHHHHHHHHhh
Confidence 99999 99999999999999864
No 4
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=100.00 E-value=2.2e-47 Score=353.72 Aligned_cols=232 Identities=31% Similarity=0.441 Sum_probs=190.2
Q ss_pred HHHHHHHHcCcccCChhHHHHHhcCCCCCC---CCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHH
Q 017515 35 AVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEK 111 (370)
Q Consensus 35 ~~~~le~~lgy~f~~~~Ll~~AlTh~s~~~---~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~ 111 (370)
.+..||++|||+|+|++||.+||||+|+.. ..||||||||||+||+++|++|||.+||++++|.|+.+|+.+|||.+
T Consensus 14 ~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~~~~ 93 (265)
T 3c4b_A 14 GFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTI 93 (265)
T ss_dssp THHHHHHHHTCCCSSHHHHHHHHBCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHhCCccCCHHHHHHHhcCcCcCCCCCCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhHH
Confidence 468899999999999999999999999975 35999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcChhHHHhhccchhhHHHHHHHHHh--hccc------------cccccCCCcCCchHHHHHHHHHHHHHhhcC
Q 017515 112 LARVAVKHGFYKFVRHSAAALDDKVKEFAEAV--SQED------------NTAVYGGSIKAPKVLADIVESIAAAIYVDI 177 (370)
Q Consensus 112 La~~a~~~gL~~~l~~~~~~~~~~~~~~~~~~--~~~~------------~~~~~~~~~~~~k~lad~feAliGAIyld~ 177 (370)
|+.+|.++||++|+++.++.+...+..|+... +++. .....++ ...+++++|+|||+|||||+|+
T Consensus 94 La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~laD~~EAliGAiylD~ 172 (265)
T 3c4b_A 94 FASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEED-IEVPKAMGDIFESLAGAIYMDS 172 (265)
T ss_dssp HHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC------------------CC-SCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhhhhhcchhHHhhhcchhhhhhcc-cccchHHHHHHHHHhhheeeec
Confidence 99999999999999988777767777776521 1110 0001222 5679999999999999999999
Q ss_pred CcChHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHhcCC-ceeEEEeecCCeEEEEEEECCeeEEEEeccCHHHHH
Q 017515 178 DFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGK-QVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK 256 (370)
Q Consensus 178 g~~~~~~~~v~~~ll~~~i~~~~~~~~~~p~~~L~e~~~k~~~-~~~y~~~~~~~~f~~~v~v~g~~~~~g~g~skk~Ak 256 (370)
|++.+.+|+|+.+++.|.++.......++|+..|++++++... .+.|. .+.+.|+++|+++|..+|+|.|.|||+||
T Consensus 173 G~~~~~~~~~i~~~~~~~i~~~~~~~~k~~l~el~~~~~~~~~~~~~~~--~~~~~f~v~v~v~~~~~~~G~G~SkK~Ae 250 (265)
T 3c4b_A 173 GMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAER--TYDGKVRVTVEVVGKGKFKGVGRSYRIAK 250 (265)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHCTTTEEECCCEE--CTTSCEEEEEEETTTEEEEEEESSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhHhhcCCCCHHHHHHHhccCCceeeeccc--cCCCcEEEEEEEecceEEEEeeCCHHHHH
Confidence 9999899999999999988654332234555555555543211 22222 46789999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 017515 257 LNAAREALEKLAQ 269 (370)
Q Consensus 257 ~~AA~~AL~~L~~ 269 (370)
++||+.||+.|..
T Consensus 251 q~AA~~AL~~l~~ 263 (265)
T 3c4b_A 251 SAAARRALRSLKA 263 (265)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999864
No 5
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1e-48 Score=357.68 Aligned_cols=221 Identities=31% Similarity=0.424 Sum_probs=125.4
Q ss_pred HHHHHHHHcCcccCChhHHHHHhcCCCCCC----CCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChH
Q 017515 35 AVFYVENIINYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTE 110 (370)
Q Consensus 35 ~~~~le~~lgy~f~~~~Ll~~AlTh~s~~~----~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~ 110 (370)
.+..|+++|||+| |++||.+||||+|+.. ..+|||||||||+||++++++|||.+||+.++|.|+.+|+.+|||.
T Consensus 6 ~l~~l~~~lgy~f-~~~ll~~AlTH~S~~~~~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~ 84 (242)
T 2a11_A 6 SRQPLLDALGVDL-PDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQ 84 (242)
T ss_dssp CCHHHHHHHTSCC-CHHHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHCCCC-CHHHHHHHhCCcCccccCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHH
Confidence 4578999999999 9999999999999853 4699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc---ChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHH
Q 017515 111 KLARVAVKH---GFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI 187 (370)
Q Consensus 111 ~La~~a~~~---gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v 187 (370)
+|+.+|.++ ||++|++.++.+. ..++ ...+++++|+|||+|||||+|+|++ .+++|
T Consensus 85 ~la~~a~~l~~~gL~~~l~~~~~e~------------------~~~~-~~~~~~lad~~EAliGAiyld~g~~--~~~~~ 143 (242)
T 2a11_A 85 ALADVARRLCAEGLGVHVLLGRGEA------------------NTGG-ADKSSILADGMESLLGAIYLQHGME--KAREV 143 (242)
T ss_dssp HHHHHHHHHSSSCSGGGCBCCHHHH------------------HTTG-GGCHHHHHHHHHHHHHHHHHHHCHH--HHHHH
T ss_pred HHHHHHHHhhhhChHHHhhcCchhh------------------hcCC-CCCccHHHHHHHHHHHHHHhcCCHH--HHHHH
Confidence 999999999 9999999875421 1122 4468999999999999999999965 45588
Q ss_pred HHHhhhhhhhhhhhccCCchHHHHHHHHHhcCCceeEEEeecCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHh
Q 017515 188 FRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267 (370)
Q Consensus 188 ~~~ll~~~i~~~~~~~~~~p~~~L~e~~~k~~~~~~y~~~~~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L 267 (370)
+..++.|.++.....
T Consensus 144 i~~~~~~~~~~~~~~----------------------------------------------------------------- 158 (242)
T 2a11_A 144 ILRLFGPLLDAAPTL----------------------------------------------------------------- 158 (242)
T ss_dssp HHHHTHHHHHHTTC------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhc-----------------------------------------------------------------
Confidence 988888876532110
Q ss_pred hhcCCCcccccccccCCchhhhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCc
Q 017515 268 AQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSR 347 (370)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~sk 347 (370)
....|||+.||||||++++..|.|.++. +||+|.+.|+|+|.| +|+.++.|.|+||
T Consensus 159 --------------------~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~-~Gp~h~~~F~v~v~v---~g~~~~~G~G~sk 214 (242)
T 2a11_A 159 --------------------GAGLDWKTSLQELTAARGLGAPSYLVTS-TGPDHDKEFTAVVVV---MDSEYGSGVGRSK 214 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------cccCChHHHHHHHHHHhCCCCCeEEEec-cCCCCCCeEEEEEEE---CCEEEEEeeeCCH
Confidence 0234899999999999999999999987 899999999999999 5889999999999
Q ss_pred hhHHHHHHHHHHHHHHhhcC
Q 017515 348 VKDAENSAASMMLRALREST 367 (370)
Q Consensus 348 kk~A~~~AA~~~l~~l~~~~ 367 (370)
|+|||.||+.||+.|.+.+
T Consensus 215 -k~Ae~~AA~~AL~~L~~~~ 233 (242)
T 2a11_A 215 -KEAEQKAAAAAWKALEVLD 233 (242)
T ss_dssp --------------------
T ss_pred -HHHHHHHHHHHHHHHhhcc
Confidence 9999999999999997653
No 6
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=2.4e-45 Score=347.88 Aligned_cols=216 Identities=22% Similarity=0.236 Sum_probs=122.7
Q ss_pred HHHHHHcCcc-cCChhHHHHHhcCCCCCC-----------CCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHH
Q 017515 37 FYVENIINYN-FKNKRLLEEALTHSSYTD-----------STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRA 104 (370)
Q Consensus 37 ~~le~~lgy~-f~~~~Ll~~AlTh~s~~~-----------~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~ 104 (370)
..||++|||+ |+|++||.+||||+|+.. ..+|||||||||+||++++++|||.+||++++|.|+.+|+
T Consensus 86 ~~lE~~igy~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~~~~P~~~eG~Lt~lr~ 165 (341)
T 3rv0_A 86 TDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKE 165 (341)
T ss_dssp CTTGGGCSSCCCSCHHHHHHHHCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred hHHHHhcCCCCcCCHHHHHHHhcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Confidence 3689999999 999999999999999975 2489999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHHcChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcC-CcChHH
Q 017515 105 ANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI-DFDLQK 183 (370)
Q Consensus 105 ~lvsn~~La~~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~-g~~~~~ 183 (370)
.+|||.+|+.+|.++||+++|+++.+.. ..++....+++++|+|||+|||||+|+ |.+.+.
T Consensus 166 ~lVs~~~La~iA~~lgL~~~l~~~~g~~------------------~~~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~ 227 (341)
T 3rv0_A 166 SIVNNNNLFDWSTKLNFTKRLQGNIATP------------------TRVVKDKMSKRYADCVEAYIGALVIDRFGTEFLD 227 (341)
T ss_dssp HHHSHHHHHHHHHHTTTTTTTCCSSCCC----------------------CCHHHHHHHHHHHHHHHHHHHHHCSSTTHH
T ss_pred HHhCHHHHHHHHHHcCcHHHhhhcCChh------------------hhccCCccccHHHHHHHHHHHHHhhcCccCCHHH
Confidence 9999999999999999999999642110 001112358999999999999999998 233445
Q ss_pred HHHHHHHhhhhhhhhhhh-----ccCCchHHHHHHHHHhcCC--ceeEEEeecCCeEEEEEEECCeeEEEEeccCHHHHH
Q 017515 184 LWMIFRGLLEPIVTLEEL-----QQQPQPVTLLFKLCQKNGK--QVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK 256 (370)
Q Consensus 184 ~~~v~~~ll~~~i~~~~~-----~~~~~p~~~L~e~~~k~~~--~~~y~~~~~~~~f~~~v~v~g~~~~~g~g~skk~Ak 256 (370)
+++|+..++.|.+...+. ....|||+.||||||+++. +|.|+.....+.|++.|+++|+.+|.|.|.|||+||
T Consensus 228 a~~fi~~l~~~~l~~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~GpF~v~v~i~~~~~g~G~G~SKK~AE 307 (341)
T 3rv0_A 228 IKEWLEELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMPPFRVEVKIGDILLDEAEGNSIREAE 307 (341)
T ss_dssp HHHHHHHHTHHHHHCGGGC-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCCceEEEEeccCCEEEEEEECCEEEEEEEeCCHHHHH
Confidence 568899999988765322 2346999999999999875 568998876666999999999999999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 017515 257 LNAAREALEKLAQS 270 (370)
Q Consensus 257 ~~AA~~AL~~L~~~ 270 (370)
++||+.||+.|...
T Consensus 308 q~AA~~AL~~L~~~ 321 (341)
T 3rv0_A 308 HRAAMKVLENDELL 321 (341)
T ss_dssp --------------
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999998654
No 7
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=100.00 E-value=1.4e-35 Score=254.76 Aligned_cols=142 Identities=35% Similarity=0.527 Sum_probs=128.4
Q ss_pred HHHHHHHHcCcccCChhHHHHHhcCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHHH
Q 017515 35 AVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLAR 114 (370)
Q Consensus 35 ~~~~le~~lgy~f~~~~Ll~~AlTh~s~~~~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La~ 114 (370)
.+..||++|||+|+|++||.+||||+|+....+|||||||||+||+++++++||.+||+.++|.|+.+|+.+|||.+|+.
T Consensus 27 ~l~~le~~lgy~F~d~~LL~~AlTH~S~~~~~~neRLEfLGDaVL~l~vs~~L~~~~P~~~eg~Lt~~r~~lVs~~~La~ 106 (170)
T 3o2r_A 27 NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAK 106 (170)
T ss_dssp CHHHHHHHHTCCCSSHHHHHHHTBCTTSSTTCCSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHCHHHHHH
Confidence 47899999999999999999999999998778999999999999999999999999999999999999999999999999
Q ss_pred HHHHcChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhhh
Q 017515 115 VAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP 194 (370)
Q Consensus 115 ~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~~ll~~ 194 (370)
+|.++||++||+.++.+. ..++ ...++++||+|||+|||||+|+|++. +++|+..++.|
T Consensus 107 ia~~lgL~~~l~~~~~~~------------------~~~~-~~~~~ilad~fEAliGAiylD~G~~~--a~~~i~~~~~~ 165 (170)
T 3o2r_A 107 IANSLNLGDFILMSVAEE------------------NNGG-KEKPSILSDALEAIIGAIHLEAGFEF--AKTIALRLIEK 165 (170)
T ss_dssp HHHHTTGGGTCBCCHHHH------------------HTTG-GGCHHHHHHHHHHHHHHHHHHHCHHH--HHHHHHHHHHH
T ss_pred HHHHcCcHHhhhcCcchh------------------hcCC-CCcchHHHHHHHHHHHHHHHHCCHHH--HHHHHHHHHHH
Confidence 999999999999875431 1222 45789999999999999999999765 44889999988
Q ss_pred hhh
Q 017515 195 IVT 197 (370)
Q Consensus 195 ~i~ 197 (370)
.++
T Consensus 166 ~~~ 168 (170)
T 3o2r_A 166 NFP 168 (170)
T ss_dssp HCT
T ss_pred HHh
Confidence 764
No 8
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=2.9e-33 Score=252.58 Aligned_cols=144 Identities=25% Similarity=0.322 Sum_probs=122.2
Q ss_pred HHHHHHcCcc-cCChhHHHHHhcCCCCCC-----------CCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHH
Q 017515 37 FYVENIINYN-FKNKRLLEEALTHSSYTD-----------STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRA 104 (370)
Q Consensus 37 ~~le~~lgy~-f~~~~Ll~~AlTh~s~~~-----------~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~ 104 (370)
..+|++|||+ |+|++||.+||||+|+.. ..+|||||||||+||++++++|||.+||+.++|.|+.+|+
T Consensus 86 ~~lE~~lgY~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~Lt~lRs 165 (246)
T 3rv1_A 86 TDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKE 165 (246)
T ss_dssp CGGGGGCSSCCCSCHHHHHHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHhcCCCCcCCHHHHHHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Confidence 3689999999 999999999999999864 3589999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHHcChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcC-CcChHH
Q 017515 105 ANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDI-DFDLQK 183 (370)
Q Consensus 105 ~lvsn~~La~~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~-g~~~~~ 183 (370)
.+|||.+|+.+|.++||++||+++.+.. + .++....++++||+|||+|||||+|+ |.+...
T Consensus 166 ~lVsn~~La~iA~~lgL~~~l~~~~g~~-------------~-----~~~~~~~~~ilAD~fEAlIGAIylD~~g~~l~~ 227 (246)
T 3rv1_A 166 SIVNNNNLFDWSTKLNFTKRLQGNIATP-------------T-----RVVKDKMSKRYADCVQAYIGALVIDRFGTEFLD 227 (246)
T ss_dssp HHHSHHHHHHHHHHTTSHHHHCSSCC-----------------------------CHHHHHHHHHHHHHHHHHCSSTTHH
T ss_pred HHhCHHHHHHHHHHCCcHHHHhhcCCHh-------------h-----hccCcccccHHHHHHHHHHHHHhHcCCCCCHHH
Confidence 9999999999999999999999642210 0 01113468999999999999999999 888889
Q ss_pred HHHHHHHhhhhhhhh
Q 017515 184 LWMIFRGLLEPIVTL 198 (370)
Q Consensus 184 ~~~v~~~ll~~~i~~ 198 (370)
+++|+..++.|.++.
T Consensus 228 v~~~l~~L~~p~l~e 242 (246)
T 3rv1_A 228 IKEWLEELSEKKLAK 242 (246)
T ss_dssp HHHHHHHHTHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998864
No 9
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.96 E-value=9.5e-30 Score=221.32 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=128.6
Q ss_pred CCchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCCCcccc-
Q 017515 204 QPQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDV- 277 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~- 277 (370)
..||++.||||||+++..|.|+++. |.+.|++.|+|+|..+++|.|.|||+||++||+.||+.|..........
T Consensus 12 ~~n~ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~~~~~~p~~ 91 (179)
T 1qu6_A 12 AGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSPLL 91 (179)
T ss_dssp SCSHHHHHHHHHHHHTCCCEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCSCCSCSS
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhcccccCCCcc
Confidence 3589999999999999989999875 4478999999999999999999999999999999999998654321100
Q ss_pred cccccCCchhhhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHH
Q 017515 278 CEIFDDIDEKFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAAS 357 (370)
Q Consensus 278 ~~~~~~~~~~~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~ 357 (370)
...... .......||++.|+||||++++.+ .|++. ++||+|.+.|+|+|.| ++..++.|.|+|| |+||+.||+
T Consensus 92 ~~~~~~-~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~~-~~G~~h~~~F~~~v~v---~~~~~~~g~g~sK-K~Ak~~AA~ 164 (179)
T 1qu6_A 92 LTTTNS-SEGLSMGNYIGLINRIAQKKRLTV-NYEQC-ASGVHGPEGFHYKCKM---GQKEYSIGTGSTK-QEAKQLAAK 164 (179)
T ss_dssp CCCSCS-SCCCCCCCCHHHHHHHHHHSCCEE-EEEEE-EECSSSSSEEEEEEEE---ETTBCCEEEESSH-HHHHHHHHH
T ss_pred CCCCCc-ccccCCCCHHHHHHHHHHhcCCcc-eEEec-CcCCCCCCeEEEEEEE---CCEEEeeEEECCH-HHHHHHHHH
Confidence 000000 011245799999999999999986 99975 7899999999999999 4777899999998 999999999
Q ss_pred HHHHHHhh
Q 017515 358 MMLRALRE 365 (370)
Q Consensus 358 ~~l~~l~~ 365 (370)
.||..|..
T Consensus 165 ~al~~L~~ 172 (179)
T 1qu6_A 165 LAYLQILS 172 (179)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999963
No 10
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.95 E-value=5.5e-28 Score=250.08 Aligned_cols=134 Identities=28% Similarity=0.346 Sum_probs=122.3
Q ss_pred HHHHHHHHHcCcccCC--------------------------hhHHHHHhcCCCCCCCCCcchhhhhhHHHHHHHHHHHH
Q 017515 34 DAVFYVENIINYNFKN--------------------------KRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYV 87 (370)
Q Consensus 34 ~~~~~le~~lgy~f~~--------------------------~~Ll~~AlTh~s~~~~~~~erLe~LGdavL~~~v~~~l 87 (370)
..+..+|++|||+|+| ++||.+||||+| |||||||||+||++++++||
T Consensus 593 ~~~~~lE~~lgY~F~~~~~~~~~~~L~~~~l~~i~~~~~~~~~~LL~~AlTH~S------neRLEfLGDaVL~l~vs~~L 666 (756)
T 2qvw_A 593 KVLALYEKILAYESSGGSKHIAAQTVSRSLAVPIPSGTIPFLIRLLQIALTPHV------YQKLELLGDAFLKCSLALHL 666 (756)
T ss_dssp HHHHHHHHHHSSCCCCSSHHHHHHHHHHTTCSCCCSSCHHHHHHHHHHHHSTGG------GHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCCccCcchhhhHhhhhhhhccccccccccccHHHHHHHhcCcc------chHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999 899999999999 89999999999999999999
Q ss_pred HHHCCCCCcchhhHHHHHhcChHHHHHHHHHcC--hhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHH
Q 017515 88 FLAYPQLDPGQLSLLRAANISTEKLARVAVKHG--FYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADI 165 (370)
Q Consensus 88 ~~~~p~~~~~~l~~lr~~lvsn~~La~~a~~~g--L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~ 165 (370)
|.+||++++|.|+.+|+.+|||++|+.+|+++| |++|++.+..+. ...++++||+
T Consensus 667 ~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~l~~~~~e~-----------------------~~~~kilaD~ 723 (756)
T 2qvw_A 667 HALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHPKI-----------------------QPDSKVYGDT 723 (756)
T ss_dssp HHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHHHHHHSTTC-----------------------CTTCSHHHHH
T ss_pred HHhCCCCChHHHHHHHHHHhCChHHHHHHHHhcccHHHHHhcCchhh-----------------------cCCccHHHHH
Confidence 999999999999999999999999999999999 999999875421 2468999999
Q ss_pred HHHHHHHHhhcCCcChHHHHHHHHHhhhhhhhh
Q 017515 166 VESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTL 198 (370)
Q Consensus 166 feAliGAIyld~g~~~~~~~~v~~~ll~~~i~~ 198 (370)
|||+|||||+|+|++. +++|+.+++.+.++.
T Consensus 724 ~EAliGAiylD~G~~~--a~~~v~~~~~~~l~~ 754 (756)
T 2qvw_A 724 FEAILAAILLACGEEA--AGAFVREHVLPQVVA 754 (756)
T ss_dssp HHHHHHHHHHHHCHHH--HHHHHHHHTGGGCCC
T ss_pred HHHHHHHHHHhCCHHH--HHHHHHHHHHHHhhc
Confidence 9999999999999764 558899999887653
No 11
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.95 E-value=5e-27 Score=211.73 Aligned_cols=154 Identities=25% Similarity=0.263 Sum_probs=119.5
Q ss_pred CCchHHHHHHHHHhcCC-ceeEEEeec-C--CeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCCCcccc--
Q 017515 204 QPQPVTLLFKLCQKNGK-QVDIKHWRK-N--RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVNCDV-- 277 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~-~~~y~~~~~-~--~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~~~~-- 277 (370)
..||++.||||||+++. .|.|+++.. | +.|+++|+|+|..++.|.|.|||+||++||+.||..|....+.....
T Consensus 21 ~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~~~~~~~~ 100 (232)
T 2yt4_A 21 GKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPDFVKQTSEEK 100 (232)
T ss_dssp TSCHHHHHHHHHHHTTCCCCEEEEEECSCTTSCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTTTTTC-----
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhhccccCCccc
Confidence 46999999999999988 578998753 3 78999999999999999999999999999999999997642211000
Q ss_pred ---c---ccc-----cCCc-----hhhhhhhHHHHHHHHHHhcCCCCCceE--EecccCCCCCcceEEEEEEEecCCeEE
Q 017515 278 ---C---EIF-----DDID-----EKFEIEAAKQKLHELCGKKKWPKPSYK--IEKDEGPSHDKKFMSAVQIATTDGVLF 339 (370)
Q Consensus 278 ---~---~~~-----~~~~-----~~~~~~~~ks~L~e~~~k~~~~~P~y~--~~~~~g~~~~~~f~~~v~v~~~~~~~~ 339 (370)
+ ... ++.. +.....|||+.||| |+++++++|.|. ++.++||+|.+.|+|+|. ..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~------~~~ 173 (232)
T 2yt4_A 101 PKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG------KHT 173 (232)
T ss_dssp ---CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET------TEE
T ss_pred cccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE------EEE
Confidence 0 000 0000 11234599999999 999999999999 777899999999998773 578
Q ss_pred EeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 340 ITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 340 ~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
+.|.|+|| |+|||.||+.||..|..
T Consensus 174 ~~G~G~sK-K~Aeq~AA~~aL~~L~~ 198 (232)
T 2yt4_A 174 VRGWCKNK-RVGKQLASQKILQLLHP 198 (232)
T ss_dssp EEEEESSH-HHHHHHHHHHHHHHHST
T ss_pred EEEEeCCH-HHHHHHHHHHHHHHHHh
Confidence 99999999 99999999999999974
No 12
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.94 E-value=2.3e-28 Score=252.87 Aligned_cols=164 Identities=19% Similarity=0.243 Sum_probs=136.5
Q ss_pred cCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHHHHHHHcChhHHHhhccchhhHHHH
Q 017515 58 THSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVK 137 (370)
Q Consensus 58 Th~s~~~~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La~~a~~~gL~~~l~~~~~~~~~~~~ 137 (370)
||+|+....||||||||||+||++++++|||.+||+.++|.|+.+|+.+|||.+|+.+|+++||++||+.+..+
T Consensus 324 Th~s~~~~~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~~~e------ 397 (756)
T 2qvw_A 324 GPFGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNL------ 397 (756)
T ss_dssp BGGGBCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSCC------
T ss_pred ccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhccCCCC------
Confidence 34444434589999999999999999999999999999999999999999999999999999999999987532
Q ss_pred HHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhc-CCcChHHHHHHHHHhhhhhhhhhhh-ccCCch-HHHHHHH
Q 017515 138 EFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD-IDFDLQKLWMIFRGLLEPIVTLEEL-QQQPQP-VTLLFKL 214 (370)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld-~g~~~~~~~~v~~~ll~~~i~~~~~-~~~~~p-~~~L~e~ 214 (370)
...++++||+|||+|||||+| +|++. +++|+.+++.+.+...+. ...+|| ++.|||+
T Consensus 398 ------------------~~~~~ilaD~~EAliGAiylD~~G~~~--a~~~v~~~~~~~~~~~~~~~~~~Dp~Kt~LqE~ 457 (756)
T 2qvw_A 398 ------------------VAKSKTWADMYEEIVGSIFTGPNGIYG--CEEFLAKTLMSPEHSKTVGSACPDAVTKASKRV 457 (756)
T ss_dssp --------------------CCCCHHHHHHHHHHHHHHSTTHHHH--HHHHHHHHHBCGGGSCC---CCCHHHHHHHHHH
T ss_pred ------------------CCcccHHHhHHHHHhCcccccccChHH--HHHHHHHHHHhhhhcccccccccCchHHHHHHH
Confidence 145789999999999999999 98765 458899999888765443 235688 9999999
Q ss_pred HHhcCCceeEEEeecCCeEEEEEEECCeeEEEEeccCHHHHH---------HHHHHHHHHHhhhcC
Q 017515 215 CQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAK---------LNAAREALEKLAQSM 271 (370)
Q Consensus 215 ~~k~~~~~~y~~~~~~~~f~~~v~v~g~~~~~g~g~skk~Ak---------~~AA~~AL~~L~~~~ 271 (370)
+|+++. +.|.+.+.+.|| .+||+.||+.|...+
T Consensus 458 ~q~~~i------------------------a~~v~~~~~~ak~~~~~~~~~~~aa~~aL~~l~~~~ 499 (756)
T 2qvw_A 458 CMGEAG------------------------AHEFRSLVDYACEQGISVFCSSRVSTMFLERLRDIP 499 (756)
T ss_dssp HTSCCC------------------------HHHHHHHHHHTTTTTCCCBSSSHHHHHHHHHHHHSC
T ss_pred Hhccch------------------------hhhhhhhhhHHhhhccccchhhHHHHHHHHhhcccc
Confidence 986643 456677788888 689999999987754
No 13
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.90 E-value=5e-23 Score=186.28 Aligned_cols=153 Identities=25% Similarity=0.290 Sum_probs=118.7
Q ss_pred CchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCCCc-----
Q 017515 205 PQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVN----- 274 (370)
Q Consensus 205 ~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~----- 274 (370)
.+||+.|+++++. ...|.|+++. |.+.|+++|.|+|.. +.|.|.|||+||++||+.||+.|.......
T Consensus 4 ~~~K~~l~~l~e~-~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~-~~G~G~SKK~Aeq~AA~~al~~l~~~~~~~~~~~a 81 (236)
T 2l3j_A 4 VLPKNALMQLNEI-KPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLA 81 (236)
T ss_dssp CCTHHHHHHHHHH-CSSCEEEEEEEESCTTSCEEEEEEEETTEE-EEEEESHHHHHHHHHHHHHHHHHTTCSSCSCCCCS
T ss_pred CCCcCHHHHHhhc-CCCceEEEEeccCCCCCCeEEEEEEECCEE-EEEecCChHHHHHHHHHHHHHHHHhccccccchhh
Confidence 3778888888865 3467898865 457999999999988 499999999999999999999997642100
Q ss_pred -----c----cccc-------cc----------------------------cCC----------c---------hhhhhh
Q 017515 275 -----C----DVCE-------IF----------------------------DDI----------D---------EKFEIE 291 (370)
Q Consensus 275 -----~----~~~~-------~~----------------------------~~~----------~---------~~~~~~ 291 (370)
. .+++ .+ .++ . .+....
T Consensus 82 mg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~~ 161 (236)
T 2l3j_A 82 MGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPPSGK 161 (236)
T ss_dssp CCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCCSSC
T ss_pred hccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCCCCC
Confidence 0 0000 00 000 0 001346
Q ss_pred hHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhcCCC
Q 017515 292 AAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTYL 369 (370)
Q Consensus 292 ~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~~~~ 369 (370)
|||+.|||| +..|.|+++.++||+|.+.|+|+|.| +|.. ..|.|+|| |+|||.||+.||..|....+|
T Consensus 162 d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v---~~~~-~~G~G~sK-K~Aeq~AA~~al~~L~~~~~~ 229 (236)
T 2l3j_A 162 NPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVV---DGQF-FEGSGRNK-KLAKARAAQSALATVFNLHLL 229 (236)
T ss_dssp CHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEE---TTEE-EEEEESSH-HHHHHHHHHHHHHHHTTCCSS
T ss_pred CHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEE---CCEE-EEeeeCCH-HHHHHHHHHHHHHHHccccch
Confidence 999999999 47799999999999999999999999 5765 49999999 999999999999999876554
No 14
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.82 E-value=2.3e-20 Score=138.72 Aligned_cols=73 Identities=27% Similarity=0.390 Sum_probs=68.6
Q ss_pred hhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhc
Q 017515 290 IEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRES 366 (370)
Q Consensus 290 ~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~ 366 (370)
..|||+.||||||++++..|.|+++.++||+|.+.|+|+|.| +|..++.|.|+|| |+|||.||+.||..|..+
T Consensus 3 ~~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v---~g~~~~~G~G~sK-K~Aeq~AA~~al~~L~~~ 75 (76)
T 3adj_A 3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEI---GGIKYTGAATRTK-KDAEISAGRTALLAIQSD 75 (76)
T ss_dssp CHHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEE---TTEEEECCCBSSH-HHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEE---CCEEEEEeccCCH-HHHHHHHHHHHHHHHhhc
Confidence 469999999999999999999999989999999999999999 6889999999999 999999999999999765
No 15
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.82 E-value=3.1e-20 Score=152.37 Aligned_cols=107 Identities=16% Similarity=0.120 Sum_probs=90.7
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHHHHHHHc----Chh----HHHhhccchhhHHH
Q 017515 65 STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKH----GFY----KFVRHSAAALDDKV 136 (370)
Q Consensus 65 ~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La~~a~~~----gL~----~~l~~~~~~~~~~~ 136 (370)
..|.+|||||||+|++++|++||+.+ |..++|.|+.+|+.+||...++.++.++ +|. ++++.+..+
T Consensus 9 ~~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~----- 82 (138)
T 1u61_A 9 QLNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNA----- 82 (138)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCC-----
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCCc-----
Confidence 46899999999999999999999999 8899999999999999999999999999 997 688877432
Q ss_pred HHHHHHhhccccccccCCCcCCchH----HHHHHHHHHHHHhhcCCcChHHHHHHHHHhhh
Q 017515 137 KEFAEAVSQEDNTAVYGGSIKAPKV----LADIVESIAAAIYVDIDFDLQKLWMIFRGLLE 193 (370)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~k~----lad~feAliGAIyld~g~~~~~~~~v~~~ll~ 193 (370)
. ..++ .+...+ +||.|||+|||||+|+|++... +|+..++.
T Consensus 83 ----------~---~~~~-~k~~si~~Yr~A~~fEALiGalYLd~g~er~~--~~i~~~~~ 127 (138)
T 1u61_A 83 ----------N---SGTV-PKNTDVQTYRHSTAFEALIGYHHLLNNRERLD--EIVYKAIA 127 (138)
T ss_dssp ----------C---SSCC-CTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHH--HHHHHHHH
T ss_pred ----------c---cCCC-CCCCchhhhhhhhHHHHHHHHHHHCCCHHHHH--HHHHHHHH
Confidence 1 1122 556788 9999999999999999876554 67776663
No 16
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.80 E-value=1.7e-19 Score=132.95 Aligned_cols=69 Identities=43% Similarity=0.600 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecC-CCchhHHHHHHHHHHHHHHh
Q 017515 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDE-KSRVKDAENSAASMMLRALR 364 (370)
Q Consensus 291 ~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g-~skkk~A~~~AA~~~l~~l~ 364 (370)
.|||+.||||||+++++.|.|+++.+ ||+|.+.|+|+|.| +|..++.|.| +|| |+|||.||+.||..|.
T Consensus 3 ~d~Kt~LqE~~q~~~~~~p~Y~~~~~-Gp~h~~~F~~~v~v---~g~~~~~G~G~~sK-K~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 3 HVFKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVIL---DGVRYNSLPGFFNR-KAAEQSAAEVALRELA 72 (73)
T ss_dssp CSHHHHHHHHHHHTTCCCCEEEEEEE-SSTTSCEEEEEEEE---TTEEEECCSCBSSH-HHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEeE-CCCCCCeEEEEEEE---CCEEEEeeeccCCH-HHHHHHHHHHHHHHhh
Confidence 48999999999999999999999975 99999999999999 7889999999 899 9999999999999885
No 17
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.80 E-value=1.3e-19 Score=132.24 Aligned_cols=68 Identities=26% Similarity=0.537 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 293 AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 293 ~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
|++.||||||++++..|.|+++.++||+|.+.|+|+|.| +|. ++.|.|+|| |+|||.||+.||..|.+
T Consensus 2 p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v---~~~-~~~G~G~sK-K~Aeq~AA~~al~~L~~ 69 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRV---ETF-VETGSGTSK-QVAKRVAAEKLLTKFKT 69 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEE---TTE-EEEEEESSH-HHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEE---CCE-EEEeecCCH-HHHHHHHHHHHHHHHhC
Confidence 899999999999999999999988999999999999999 677 999999999 99999999999999863
No 18
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.80 E-value=1.4e-19 Score=138.12 Aligned_cols=74 Identities=27% Similarity=0.442 Sum_probs=68.8
Q ss_pred hhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhc
Q 017515 288 FEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRES 366 (370)
Q Consensus 288 ~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~ 366 (370)
....|||+.||||||++++..|.|+++.++||+|.+.|+|+|.| ++. ++.|.|+|| |+|||.||+.||+.|.++
T Consensus 13 ~~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i---~g~-~~~G~G~SK-K~Aeq~AA~~AL~~L~~~ 86 (89)
T 2cpn_A 13 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRV---ERF-IEIGSGTSK-KLAKRNAAAKMLLRVSGP 86 (89)
T ss_dssp CCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEE---TTE-EEEEEESSH-HHHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEE---CCE-EEEeeeCCH-HHHHHHHHHHHHHHHHhh
Confidence 34679999999999999999999999989999999999999999 676 999999999 999999999999999754
No 19
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.79 E-value=2.3e-19 Score=136.65 Aligned_cols=73 Identities=27% Similarity=0.464 Sum_probs=67.7
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhc
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRES 366 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~ 366 (370)
...|||+.||||||+++++.|.|+++.++||+|.+.|+|+|.| ++. ++.|.|+|| |+|||.||+.||..|...
T Consensus 13 ~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v---~g~-~~~G~G~SK-K~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 13 RGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRV---ERF-IEIGSGTSK-KLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEE---TTE-EEEEEESSH-HHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEE---CCE-EEEEeeCCH-HHHHHHHHHHHHHHHHcc
Confidence 4569999999999999999999999989999999999999999 676 999999999 999999999999999753
No 20
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.78 E-value=1.2e-19 Score=134.87 Aligned_cols=71 Identities=25% Similarity=0.488 Sum_probs=66.5
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
...|||+.||||||++++. |.|+++.++||+|.+.|+|+|.| ++ .++.|.|+|| |+|||.||+.||..|++
T Consensus 5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i---~~-~~~~G~G~sK-K~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIV---GS-IVTEGEGNGK-KVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEE---TT-EEEEECCCST-TSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEE---CC-EEEEEeeCCH-HHHHHHHHHHHHHHHhh
Confidence 3469999999999999999 99999989999999999999999 67 9999999999 99999999999999875
No 21
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.78 E-value=3.9e-19 Score=135.72 Aligned_cols=71 Identities=23% Similarity=0.336 Sum_probs=66.6
Q ss_pred hhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 290 IEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 290 ~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
..|||+.||||||++++..|.|+++.++||+|.+.|+|+|.| ++. ++.|.|+|| |+|||.||+.||+.|..
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v---~g~-~~~G~G~SK-K~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV---GNE-VATGTGPNK-KIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEE---TTE-EEEEEESSH-HHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEE---CCE-EEEEeeCCH-HHHHHHHHHHHHHHHhc
Confidence 469999999999999999999999988999999999999999 575 899999999 99999999999999964
No 22
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.77 E-value=1e-18 Score=132.19 Aligned_cols=72 Identities=28% Similarity=0.335 Sum_probs=66.8
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhc
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRES 366 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~ 366 (370)
...|||+.||||||+++ ..|.|+++.++||+|.+.|+|+|.| ++ .++.|.|+|| |+|||.||+.||+.|.+.
T Consensus 6 ~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v---~~-~~~~G~G~SK-K~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 6 SGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTV---GD-ITCTGEGTSK-KLAKHRAAEAAINILKAN 77 (84)
T ss_dssp CCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEE---TT-EEEEECSSCT-THHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEE---CC-EEEEeeeCCH-HHHHHHHHHHHHHHHhcc
Confidence 34699999999999998 7899999988999999999999999 67 8999999999 999999999999999754
No 23
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.77 E-value=5.2e-19 Score=135.56 Aligned_cols=76 Identities=26% Similarity=0.358 Sum_probs=59.8
Q ss_pred hhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhcC
Q 017515 288 FEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALREST 367 (370)
Q Consensus 288 ~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~~ 367 (370)
....|||+.||||||+++ ..|.|+++.++||+|.+.|+|+|.| ++. ++.|.|+|| |+|||.||+.||+.|...+
T Consensus 11 ~~~kd~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~H~~~F~~~v~v---~g~-~~~G~G~SK-K~Aeq~AA~~aL~~L~~~~ 84 (90)
T 3llh_A 11 NPGKTPISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTV---GDT-SCTGQGPSK-KAAKHKAAEVALKHLKGGS 84 (90)
T ss_dssp --CCCHHHHHHHHHHHTT-CCCEEEEEEEC-----CCEEEEEEE---TTE-EEEEEESSH-HHHHHHHHHHHHHHHC---
T ss_pred ccCCCHHHHHHHHHHhcC-CCCEEEEEEeECCCCCCcEEEEEEE---CCE-EEEEEeCCH-HHHHHHHHHHHHHHHHhcc
Confidence 356799999999999997 5799999889999999999999999 566 799999999 9999999999999998766
Q ss_pred CC
Q 017515 368 YL 369 (370)
Q Consensus 368 ~~ 369 (370)
.+
T Consensus 85 ~~ 86 (90)
T 3llh_A 85 ML 86 (90)
T ss_dssp --
T ss_pred cc
Confidence 43
No 24
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-19 Score=135.73 Aligned_cols=72 Identities=29% Similarity=0.338 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHh-----cCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 291 EAAKQKLHELCGK-----KKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 291 ~~~ks~L~e~~~k-----~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
.|||+.||||||+ +++..|.|+++.++||+|.+.|+|+|.| +|..++.|.|+|| |+|||.||+.||..|..
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v---~g~~~~~G~G~SK-K~AEq~AA~~AL~~L~~ 76 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYF---KGERIGCGKGPSI-QQAEMGAAMDALEKYNF 76 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEE---TTEECCCEEESSH-HHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEE---CCEEEEEEeeCCH-HHHHHHHHHHHHHHHhH
Confidence 3899999999998 4678999999989999999999999999 7889999999999 99999999999998864
Q ss_pred c
Q 017515 366 S 366 (370)
Q Consensus 366 ~ 366 (370)
.
T Consensus 77 ~ 77 (85)
T 2khx_A 77 P 77 (85)
T ss_dssp S
T ss_pred h
Confidence 3
No 25
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=1.6e-18 Score=136.06 Aligned_cols=75 Identities=41% Similarity=0.546 Sum_probs=66.1
Q ss_pred hhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecC-CCchhHHHHHHHHHHHHHHhhc
Q 017515 288 FEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDE-KSRVKDAENSAASMMLRALRES 366 (370)
Q Consensus 288 ~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g-~skkk~A~~~AA~~~l~~l~~~ 366 (370)
....|||+.||||||+++++.|.|+++.+ ||+|.+.|+|+|.| +|..++.|.| +|| |+|||.||+.||..|..+
T Consensus 14 ~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~-Gp~H~~~F~~~V~v---~g~~~~~G~G~~SK-K~Aeq~AA~~AL~~L~~~ 88 (103)
T 2l2n_A 14 SNCYVFKSRLQEYAQKYKLPTPVYEIVKE-GPSHKSLFQSTVIL---DGVRYNSLPGFFNR-KAAEQSAAEVALRELAKS 88 (103)
T ss_dssp -----CTTHHHHHHHHTTCCCCEEEEEEE-SCSSSCEEEEEEEE---TTEEEECCSCBSSH-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEeE-cCCCCCeEEEEEEE---CCEEEEEeecCCCH-HHHHHHHHHHHHHHHhcc
Confidence 35679999999999999999999999975 99999999999999 7899999999 899 999999999999999865
Q ss_pred C
Q 017515 367 T 367 (370)
Q Consensus 367 ~ 367 (370)
+
T Consensus 89 ~ 89 (103)
T 2l2n_A 89 S 89 (103)
T ss_dssp C
T ss_pred c
Confidence 4
No 26
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.75 E-value=1.5e-18 Score=141.99 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=85.2
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHHHHHHHcC--hh----HHHhhccchhhHHHHH
Q 017515 65 STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHG--FY----KFVRHSAAALDDKVKE 138 (370)
Q Consensus 65 ~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La~~a~~~g--L~----~~l~~~~~~~~~~~~~ 138 (370)
..|.+|||||||+|++++|.+||+.+ |+ ++|.|+.+++.+||.+.++.++.+++ |. .+++.+..
T Consensus 12 ~~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l~~~Lte~E~~~~rrGrn-------- 81 (137)
T 2gsl_A 12 DYSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVIGKRAKN-------- 81 (137)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHHGGGSCHHHHHHHHHHHC--------
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHhCHHHHHHHHhccc--------
Confidence 46899999999999999999999999 88 99999999999999999999999985 44 34443321
Q ss_pred HHHHhhccccccccCCCcCCch----HHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhhhhh
Q 017515 139 FAEAVSQEDNTAVYGGSIKAPK----VLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV 196 (370)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~k----~lad~feAliGAIyld~g~~~~~~~~v~~~ll~~~i 196 (370)
. ..++..+..+ .+||.|||+|||+|+|+|++... +++..++...+
T Consensus 82 -------a----~~~~~~k~~si~~Y~~At~fEALiGaLYLd~~~erl~--~ll~~~~~~~~ 130 (137)
T 2gsl_A 82 -------S----NIKTFPRSCTVMEYKEATALEAIIGAMYLLKKEEEIK--KIINIVIKGEL 130 (137)
T ss_dssp -------------CCSCCSSSCHHHHHHHHHHHHHHHHHHHTTCHHHHH--HHHHHHHHTTC
T ss_pred -------c----cCCCCCCCCChHHHHHhhHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHH
Confidence 1 1111134555 49999999999999999866544 67777765443
No 27
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.74 E-value=1.4e-18 Score=134.73 Aligned_cols=73 Identities=26% Similarity=0.340 Sum_probs=67.7
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhc
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRES 366 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~ 366 (370)
...|||+.||||||++++. |.|+++.+.||+|.+.|+|+|.| ++..++.|.|+|| |+|||.||+.||+.|.+.
T Consensus 12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i---~g~~~~~G~G~SK-K~Aeq~AA~~AL~~L~~~ 84 (97)
T 1x49_A 12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLI---DEKEFPEAKGRSK-QEARNAAAKLAVDILDNE 84 (97)
T ss_dssp CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEE---SSCCCCCEEESSH-HHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEE---CCEEEEEEeeCCH-HHHHHHHHHHHHHHHHhh
Confidence 4579999999999999987 89999888999999999999999 6888999999999 999999999999999753
No 28
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.74 E-value=1.7e-18 Score=134.69 Aligned_cols=73 Identities=29% Similarity=0.452 Sum_probs=67.5
Q ss_pred hhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCC-eEEEeecCCCchhHHHHHHHHHHHHHHhhcCC
Q 017515 290 IEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDG-VLFITGDEKSRVKDAENSAASMMLRALRESTY 368 (370)
Q Consensus 290 ~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~-~~~~~g~g~skkk~A~~~AA~~~l~~l~~~~~ 368 (370)
..|||+.||||||++ +..|.|++ .++||+|.+.|+|+|.| ++ ..++.|.|+|| |+|||.||+.||+.|...+.
T Consensus 5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~-~~~Gp~H~~~F~~~V~v---~g~~~~~~G~G~SK-K~Aeq~AA~~AL~~L~~~~~ 78 (99)
T 1whq_A 5 SSGIKNFLYAWCGKR-KMTPAYEI-RAVGNKNRQKFMCEVRV---EGFNYAGMGNSTNK-KDAQSNAARDFVNYLVRINE 78 (99)
T ss_dssp CCSSHHHHHHHHHHT-TCCCEEEE-EEEECSSSEEEEEEEEC---TTCSCCEEEEESSH-HHHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHC-CCCCeEEE-eeecCCCCCeEEEEEEE---CCeEEEEEeccCCH-HHHHHHHHHHHHHHHHhhCC
Confidence 359999999999999 88999999 78999999999999999 68 69999999999 99999999999999987654
No 29
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.73 E-value=6.9e-18 Score=134.45 Aligned_cols=79 Identities=25% Similarity=0.414 Sum_probs=69.7
Q ss_pred hhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEec--CCeEEEeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 288 FEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATT--DGVLFITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 288 ~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~--~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
....|||+.||||||++++ .|.|+ +.+.||+|.+.|+|+|.|.+. ++..++.|.|+|| |+|||.||+.||+.|..
T Consensus 23 ~~~~d~Kt~LqE~~Qk~~~-~p~Y~-~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SK-K~AEq~AA~~AL~~L~~ 99 (113)
T 1uil_A 23 WTLENAKARLNQYFQKEKI-QGEYK-YTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNK-KLAAQSCALSLVRQLYH 99 (113)
T ss_dssp CCHHHHHHHHHHHHHHSCC-CCCCE-EEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSH-HHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHCCC-CCeEE-EeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCH-HHHHHHHHHHHHHHHHh
Confidence 3457999999999999998 89999 678899999999999999421 2678999999999 99999999999999998
Q ss_pred cCCC
Q 017515 366 STYL 369 (370)
Q Consensus 366 ~~~~ 369 (370)
.+++
T Consensus 100 ~~~i 103 (113)
T 1uil_A 100 LGVI 103 (113)
T ss_dssp HTSS
T ss_pred cCCc
Confidence 7754
No 30
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.73 E-value=4.6e-18 Score=125.25 Aligned_cols=68 Identities=28% Similarity=0.441 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 291 ~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
.|||+.||||||+ +..|.|+++.++||+|.+.|+|+|.| +|..+ .|.|+|| |+|||.||+.||+.|.+
T Consensus 4 ~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v---~g~~~-~G~G~SK-K~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 4 VLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEV---NGQVF-EGSGPTK-KKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEES---SSSEE-EEEESSH-HHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEE---CCEEE-EeecCCH-HHHHHHHHHHHHHHHhc
Confidence 5899999999996 68899999988999999999999999 57665 9999999 99999999999999875
No 31
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.71 E-value=1.1e-17 Score=127.59 Aligned_cols=69 Identities=23% Similarity=0.169 Sum_probs=63.0
Q ss_pred hhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCe-EEEeecCCCchhHHHHHHHHHHHHHHh
Q 017515 290 IEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGV-LFITGDEKSRVKDAENSAASMMLRALR 364 (370)
Q Consensus 290 ~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~-~~~~g~g~skkk~A~~~AA~~~l~~l~ 364 (370)
..|||+.||||||+++ ..|.|.++.+ ||+|++.|+++|.| ++. .+++|.|+|| |+|||.||+.||..|.
T Consensus 5 ~~D~KT~LQE~~Q~~~-~~p~Y~v~~~-GpdH~k~F~v~v~i---~~~~~~g~G~G~SK-K~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 5 DMNAKRQLYSLIGYAS-LRLHYVTVKK-PTAVDPNSIVECRV---GDGTVLGTGVGRNI-KIAGIRAAENALRDKK 74 (94)
T ss_dssp CHHHHHHHHHHTCSSS-SCCEEEECCC-CSSSCCSEEEEEEC---SSSCEEEEEEESSH-HHHHHHHHHHHHHCHH
T ss_pred CCCchHHHHHHHcCCC-CCCEEEEeee-CCCCCCeEEEEEEE---CCEEEEEEEEeCCH-HHHHHHHHHHHHHHHH
Confidence 4699999999999974 6899999865 99999999999999 678 8999999999 9999999999998775
No 32
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.69 E-value=4.2e-17 Score=124.21 Aligned_cols=70 Identities=21% Similarity=0.274 Sum_probs=63.9
Q ss_pred hhhHHHHHHHHHHhcCCCCCceEEecccCCCCCc-ceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhc
Q 017515 290 IEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDK-KFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRES 366 (370)
Q Consensus 290 ~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~-~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~ 366 (370)
..|||+.||||||++++.+ .|+ .++||+|.+ .|+|+|.| ++..++.|.|+|| |+|||.||+.||+.|...
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~-~Y~--~~~Gp~H~~~~F~~~v~v---~g~~~~~G~G~SK-K~Aeq~AA~~AL~~L~~~ 75 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSV-NYE--QCEPNSELPQRFICKCKI---GQTMYGTGSGVTK-QEAKQLAAKEAYQKLLKS 75 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCE-EEE--ECCCSSSSSCCEEEEEEE---SSCEEEEEEESSH-HHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHcCCCC-eeE--EeeCCCCCCceEEEEEEE---CCEEEEEeecCCH-HHHHHHHHHHHHHHHHhc
Confidence 4599999999999999865 999 578999999 79999999 6889999999999 999999999999999753
No 33
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.69 E-value=3.1e-17 Score=127.31 Aligned_cols=69 Identities=26% Similarity=0.393 Sum_probs=63.9
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHh
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALR 364 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~ 364 (370)
...|||+.||||||++ +.|.|+++.++||+|.+.|+++|.| ++..+ .|.|+|| |+|||.||+.||..|+
T Consensus 14 ~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v---~g~~~-~G~G~SK-K~Aeq~AA~~aL~~L~ 82 (97)
T 2dmy_A 14 KAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDV---DGTTY-EASGPSK-KTAKLHVAVKVLQAMG 82 (97)
T ss_dssp CSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEE---TTEEE-EEEESSH-HHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEE---CCEEE-EEeeCCH-HHHHHHHHHHHHHHhC
Confidence 4579999999999996 7899999988999999999999999 67776 9999999 9999999999999996
No 34
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.69 E-value=5.8e-17 Score=125.92 Aligned_cols=71 Identities=32% Similarity=0.377 Sum_probs=66.5
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
...|||+.||||||++++..|.|.++.++||+ +.|+|+|.| ++..++.|.|+|| |+|||.||+.||..|..
T Consensus 14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v---~g~~~~~G~G~SK-K~Aeq~AA~~AL~~L~~ 84 (98)
T 1x47_A 14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTI---DGVTYGSGTASSK-KLAKNKAARATLEILIP 84 (98)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEE---TTEEEEEEEESSH-HHHHHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEE---CCEEEEEeeeCCH-HHHHHHHHHHHHHHHHh
Confidence 45699999999999999999999999889988 999999999 7899999999999 99999999999999974
No 35
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.68 E-value=3.4e-17 Score=124.90 Aligned_cols=69 Identities=32% Similarity=0.473 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhc
Q 017515 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRES 366 (370)
Q Consensus 291 ~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~ 366 (370)
.++|+.||||||+++ .|.|+++.++||+|.+.|+|+|.| +|..+ .|.|+|| |+|||.||+.||..|...
T Consensus 14 ~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v---~g~~~-~G~G~SK-K~AEq~AA~~AL~~L~~~ 82 (91)
T 2l33_A 14 KHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEV---DGQKF-QGAGSNK-KVAKAYAALAALEKLFPD 82 (91)
T ss_dssp SSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEE---TTEEE-EEEESSH-HHHHHHHHHHHHHHHCCC
T ss_pred cCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEE---CCEEE-EeeeCCH-HHHHHHHHHHHHHHHhhc
Confidence 378999999999998 789999989999999999999999 67765 9999999 999999999999999743
No 36
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.67 E-value=5.6e-17 Score=127.85 Aligned_cols=69 Identities=23% Similarity=0.169 Sum_probs=63.1
Q ss_pred hhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCe-EEEeecCCCchhHHHHHHHHHHHHHHh
Q 017515 290 IEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGV-LFITGDEKSRVKDAENSAASMMLRALR 364 (370)
Q Consensus 290 ~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~-~~~~g~g~skkk~A~~~AA~~~l~~l~ 364 (370)
..|||+.||||||+.+ ..|.|.++.+ ||+|.+.|+++|.| +|. .+++|.|+|| |+|||.||+.||..+.
T Consensus 7 ~~D~KT~LQE~~Q~~~-~~P~Y~vv~~-GPdH~k~F~v~V~i---~g~~~~g~G~G~SK-K~AEQ~AA~~AL~~l~ 76 (117)
T 1t4o_A 7 DMNAKRQLYSLIGYAS-LRLHYVTVKK-PTAVDPNSIVECRV---GDGTVLGTGVGRNI-KIAGIRAAENALRDKK 76 (117)
T ss_dssp CTTHHHHHHHHHCCGG-GCCEEEEEEC-CCSSCCCEEEEEEC---TTCCEEEEEEESSH-HHHHHHHHHHHHHCHH
T ss_pred CCCchHHHHHHHcCCC-CCCEEEEeee-CCCCCCeEEEEEEE---CCEEEEEEEEeCCH-HHHHHHHHHHHHHHHH
Confidence 4599999999999954 7899999876 99999999999999 688 8999999999 9999999999998764
No 37
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.66 E-value=1.1e-16 Score=126.85 Aligned_cols=70 Identities=30% Similarity=0.412 Sum_probs=63.9
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhcCC
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTY 368 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~~~ 368 (370)
...|||+.||||||+ |.|+++.++||+|.+.|+|+|.| +|..+ .|.|+|| |+|||.||+.||+.|.+.+.
T Consensus 35 ~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v---~g~~~-~G~G~SK-K~AEq~AA~~AL~~L~~~~~ 104 (114)
T 2ljh_A 35 QPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEV---DGQKY-LGQGRSK-KVARIEAAATALRSFIQFKD 104 (114)
T ss_dssp CCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEE---TTEEE-EEEESSH-HHHHHHHHHHHHHHHCCCTT
T ss_pred CCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEE---CCEEE-EeeeCCH-HHHHHHHHHHHHHHHHcCCC
Confidence 346999999999984 89999989999999999999999 68888 9999999 99999999999999987654
No 38
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.64 E-value=4e-16 Score=126.49 Aligned_cols=69 Identities=30% Similarity=0.377 Sum_probs=64.6
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecC-CCchhHHHHHHHHHHHHHHh
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDE-KSRVKDAENSAASMMLRALR 364 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g-~skkk~A~~~AA~~~l~~l~ 364 (370)
...|||+.||||||+++++.|.|+++.+ +|.+.|+|+|.| ++..++.|.| +|| |+|||.||+.||+.|.
T Consensus 24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~---~H~~~F~v~V~v---~g~~~g~G~G~~SK-K~AEQ~AA~~AL~~L~ 93 (128)
T 1whn_A 24 PQITPKMCLLEWCRREKLPQPVYETVQR---TIDRMFCSVVTV---AEQKYQSTLWDKSK-KLAEQTAAIVCLRSQG 93 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEEC---SSSCCEEEEEEE---TTEEEEESSCBSSH-HHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHcCCCCCeEEEEee---cCCCcEEEEEEE---CCEEEEEEeccCCH-HHHHHHHHHHHHHHHh
Confidence 3569999999999999999999999865 899999999999 7899999999 999 9999999999999996
No 39
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.64 E-value=3.7e-16 Score=114.38 Aligned_cols=68 Identities=29% Similarity=0.415 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhcC
Q 017515 290 IEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALREST 367 (370)
Q Consensus 290 ~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~~ 367 (370)
.+||++.||||| ..|.|+++.++||+|.+.|+|+|.| +|..+ .|.|+|| |+|||.||+.||+.|....
T Consensus 3 ~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v---~~~~~-~G~G~SK-K~Aeq~AA~~al~~L~~~~ 70 (71)
T 2b7v_A 3 GKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVV---DGQFF-EGSGRNK-KLAKARAAQSALATVFNLH 70 (71)
T ss_dssp SSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEEC---SSCEE-EEEESSH-HHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEE---CCEEE-EEeeCCH-HHHHHHHHHHHHHHHHhcc
Confidence 468999999994 6799999989999999999999999 56654 8999999 9999999999999997653
No 40
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.58 E-value=1.1e-15 Score=132.50 Aligned_cols=72 Identities=29% Similarity=0.440 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhc
Q 017515 290 IEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRES 366 (370)
Q Consensus 290 ~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~ 366 (370)
..|||+.||||||++++. |.|.++.++||+|.+.|+|+|.| +|..++.|.|+|| |+|||.||+.||+.|...
T Consensus 12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v---~g~~~~~G~G~sK-K~Aeq~AA~~al~~L~~~ 83 (179)
T 1qu6_A 12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVII---DGREFPEGEGRSK-KEAKNAAAKLAVEILNKE 83 (179)
T ss_dssp SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEES---SSSCCCEEECCSS-HHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEE---CCEEEEecCCCCH-HHHHHHHHHHHHHHHhcc
Confidence 468999999999999987 89999988999999999999999 6888899999999 999999999999999754
No 41
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=110.01 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=59.3
Q ss_pred CCchHHHHHHHHHhcCC-ceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcC
Q 017515 204 QPQPVTLLFKLCQKNGK-QVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSM 271 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~-~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 271 (370)
..|||+.||||||++++ .|.|+++. +.+.|+++|+|+|. ++.|.|.|||+||++||+.||+.|...+
T Consensus 14 ~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~p 86 (88)
T 3adl_A 14 GSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTVP 86 (88)
T ss_dssp TCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHccC
Confidence 45999999999999998 47999865 45799999999998 9999999999999999999999997654
No 42
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.55 E-value=1.1e-14 Score=107.84 Aligned_cols=65 Identities=20% Similarity=0.133 Sum_probs=59.1
Q ss_pred CchHHHHHHHHHhcCC-ceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515 205 PQPVTLLFKLCQKNGK-QVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 205 ~~p~~~L~e~~~k~~~-~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 269 (370)
.|||+.||||||++++ .|.|+++. |.+.|++.|+|+|..++.|.|.|||+||++||+.||..|..
T Consensus 4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 4899999999999998 57898864 45799999999999999999999999999999999999864
No 43
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.55 E-value=6.4e-15 Score=108.75 Aligned_cols=68 Identities=29% Similarity=0.387 Sum_probs=57.8
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhc
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRES 366 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~ 366 (370)
..+||++.|+|++ ..|.|+++.++||+|++.|+++|.| +|..+ .|.|+|| |+|||.||+.||+.|...
T Consensus 5 ~~K~pl~~L~q~~-----~~p~Y~~~~~~Gp~H~~~F~~~v~v---~g~~~-~G~G~SK-K~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 5 HGKNPVMELNEKR-----RGLKYELISETGGSHDKRFVMEVEV---DGQKF-QGAGSNK-KVAKAYAALAALEKLFPD 72 (75)
T ss_dssp -CCCHHHHHHHHS-----TTCCEEEEEEESCTTSCEEEEEEEE---TTEEE-EEEESSH-HHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHcC-----CCCEEEEEEeeCCCCCceEEEEEEE---CCEEE-EEEECCH-HHHHHHHHHHHHHHHHcc
Confidence 3456666666663 5789999999999999999999999 67777 9999999 999999999999999754
No 44
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.55 E-value=2e-14 Score=104.46 Aligned_cols=62 Identities=26% Similarity=0.261 Sum_probs=56.3
Q ss_pred chHHHHHHHHHhcCC-ceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhh
Q 017515 206 QPVTLLFKLCQKNGK-QVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268 (370)
Q Consensus 206 ~p~~~L~e~~~k~~~-~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~ 268 (370)
.|++.||||||++++ .|.|+++. |.+.|+++|+++|. +++|.|.|||+||+.||+.||..|.
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 389999999999998 47998864 45799999999998 9999999999999999999999885
No 45
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.54 E-value=2.4e-14 Score=105.31 Aligned_cols=64 Identities=22% Similarity=0.099 Sum_probs=58.6
Q ss_pred CchHHHHHHHHHhcCC-ceeEEEee----cCCeEEEEEEECCeeEEEEec-cCHHHHHHHHHHHHHHHhh
Q 017515 205 PQPVTLLFKLCQKNGK-QVDIKHWR----KNRKNIASVYVDGSFVASASS-EQKEIAKLNAAREALEKLA 268 (370)
Q Consensus 205 ~~p~~~L~e~~~k~~~-~~~y~~~~----~~~~f~~~v~v~g~~~~~g~g-~skk~Ak~~AA~~AL~~L~ 268 (370)
.||++.||||||++++ .|.|+++. |.+.|++.|+|+|..+++|.| .|||+||++||+.||..|.
T Consensus 3 ~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 3 HVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 4899999999999998 57899886 447899999999999999999 9999999999999999884
No 46
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.54 E-value=3e-14 Score=108.93 Aligned_cols=68 Identities=22% Similarity=0.220 Sum_probs=57.7
Q ss_pred cCCchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcC
Q 017515 203 QQPQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSM 271 (370)
Q Consensus 203 ~~~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 271 (370)
..+|||+.||||||+++..|.|+++. |.+.|+++|+|+|. +++|.|.|||+||++||+.||+.|....
T Consensus 12 ~~kd~Ks~LqE~~q~~~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~~ 84 (90)
T 3llh_A 12 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGGS 84 (90)
T ss_dssp -CCCHHHHHHHHHHHTTCCCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC---
T ss_pred cCCCHHHHHHHHHHhcCCCCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhcc
Confidence 35699999999999998889999864 45799999999997 7999999999999999999999997653
No 47
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.53 E-value=3.7e-14 Score=107.03 Aligned_cols=66 Identities=20% Similarity=0.178 Sum_probs=60.0
Q ss_pred CCchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 204 QPQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
..|||+.||||||+++..|.|+++. |.+.|++.|+|+| .++.|.|.|||+||++||+.||+.|...
T Consensus 7 ~~d~Ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 7 GKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp CCCHHHHHHHHHHHTTCCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhcc
Confidence 4699999999999998778999864 5689999999999 9999999999999999999999999754
No 48
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.53 E-value=7.7e-14 Score=106.12 Aligned_cols=70 Identities=24% Similarity=0.228 Sum_probs=61.8
Q ss_pred CCchHHHHHHHHHhcCCceeEEEee----cCC-eEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCCCc
Q 017515 204 QPQPVTLLFKLCQKNGKQVDIKHWR----KNR-KNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPVN 274 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~~~y~~~~----~~~-~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~~ 274 (370)
..|||+.||||||+++..+.|+ .. |.+ .|++.|+|+|..++.|.|.|||+||++||+.||..|...++..
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~~ 79 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSVNYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKT 79 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCEEEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred CCCHHHHHHHHHHHcCCCCeeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4599999999999999977998 43 456 6999999999999999999999999999999999998765443
No 49
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.52 E-value=6e-14 Score=106.87 Aligned_cols=66 Identities=21% Similarity=0.247 Sum_probs=59.7
Q ss_pred CCchHHHHHHHHHhcCCc-eeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 204 QPQPVTLLFKLCQKNGKQ-VDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~-~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
..|||+.||||||++++. |.|+++. |.+.|+++|+|+|. ++.|.|.|||+||+.||+.||+.|...
T Consensus 15 ~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 86 (89)
T 2cpn_A 15 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSGP 86 (89)
T ss_dssp CCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence 469999999999999984 7999864 56899999999998 999999999999999999999999653
No 50
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.52 E-value=2.9e-14 Score=110.33 Aligned_cols=69 Identities=22% Similarity=0.179 Sum_probs=62.1
Q ss_pred CCchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCC
Q 017515 204 QPQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 272 (370)
..|||+.||||||++++.|.|+++. |.+.|++.|+|+|..++.|.|.|||+||++||+.||..|.....
T Consensus 13 ~~n~Kt~LqE~~Q~~~~~p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 86 (97)
T 1x49_A 13 PGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENK 86 (97)
T ss_dssp TTHHHHHHHHHHHHHTCCEEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhcC
Confidence 4599999999999999988998764 55799999999999999999999999999999999999975543
No 51
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.51 E-value=9e-14 Score=105.91 Aligned_cols=65 Identities=28% Similarity=0.331 Sum_probs=58.7
Q ss_pred CCchHHHHHHHHHhcCC-ceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515 204 QPQPVTLLFKLCQKNGK-QVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~-~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 269 (370)
..|||+.||||||++++ .|.|+++. |.+.|++.|+|+|. ++.|.|.|||+||++||+.||+.|..
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhc
Confidence 45999999999999998 58998864 56799999999996 99999999999999999999999963
No 52
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.50 E-value=1.3e-14 Score=107.65 Aligned_cols=65 Identities=22% Similarity=0.331 Sum_probs=59.2
Q ss_pred CCchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515 204 QPQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 269 (370)
..||++.||||||++++.|.|+++. |.+.|+++|+|+| .+++|.|.|||+||+.||+.||..|..
T Consensus 6 ~~d~ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 6 KKSPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CSCHHHHHHHHHHHTTCCCEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 4599999999999999889999864 4579999999999 999999999999999999999999853
No 53
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.48 E-value=2.6e-14 Score=107.91 Aligned_cols=66 Identities=23% Similarity=0.270 Sum_probs=57.9
Q ss_pred CchHHHHHHHHHhc-----CC-ceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 205 PQPVTLLFKLCQKN-----GK-QVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 205 ~~p~~~L~e~~~k~-----~~-~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
+|||+.||||||+. +. .|.|+++. +.+.|+++|+|+|..+++|.|.|||+||++||+.||..|...
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~~ 77 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFP 77 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCSS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhHh
Confidence 48999999999984 44 68899865 457999999999999999999999999999999999988543
No 54
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.47 E-value=2.3e-13 Score=105.57 Aligned_cols=67 Identities=30% Similarity=0.281 Sum_probs=60.7
Q ss_pred CCchHHHHHHHHHhcCC-ceeEEEeec-C--CeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 204 QPQPVTLLFKLCQKNGK-QVDIKHWRK-N--RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~-~~~y~~~~~-~--~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
..||++.||||||+++. .|.|+++.. | +.|++.|+|+|..++.|.|.|||+||++||+.||..|...
T Consensus 15 ~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (98)
T 1x47_A 15 GKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD 85 (98)
T ss_dssp CCCHHHHHHHHHHHHTCSCCEEEEEECSSSSCCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEEeECCCCcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence 46999999999999998 478998763 3 7899999999999999999999999999999999999754
No 55
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.47 E-value=9.9e-14 Score=124.77 Aligned_cols=71 Identities=32% Similarity=0.377 Sum_probs=66.5
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
...|||+.||||||++++..|.|.++.++||+ +.|+|+|.| +|..++.|.|+|| |+|||.||+.||..|..
T Consensus 20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v---~g~~~~~G~G~SK-K~Aeq~AA~~aL~~L~~ 90 (232)
T 2yt4_A 20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTI---DGVTYGSGTASSK-KLAKNKAARATLEILIP 90 (232)
T ss_dssp TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEE---TTEEEEEEEESSH-HHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEE---CCEEEeecCCCCH-HHHHHHHHHHHHHHHHh
Confidence 45799999999999999999999999889998 999999999 7889999999999 99999999999999975
No 56
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.45 E-value=8.3e-14 Score=106.07 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=57.8
Q ss_pred CchHHHHHHHHHhcCCceeEEEeec----CCeEEEEEEECCe-eEEEEeccCHHHHHHHHHHHHHHHhh
Q 017515 205 PQPVTLLFKLCQKNGKQVDIKHWRK----NRKNIASVYVDGS-FVASASSEQKEIAKLNAAREALEKLA 268 (370)
Q Consensus 205 ~~p~~~L~e~~~k~~~~~~y~~~~~----~~~f~~~v~v~g~-~~~~g~g~skk~Ak~~AA~~AL~~L~ 268 (370)
.|||+.||||+|+.+..|.|++... .+.|++.|+|+|. .+|+|.|.|||+|+|+||+.||..|.
T Consensus 6 ~D~KT~LQE~~Q~~~~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 6 MNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK 74 (94)
T ss_dssp HHHHHHHHHHTCSSSSCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred CCchHHHHHHHcCCCCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 4899999999999866789998764 4689999999999 99999999999999999999998874
No 57
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.45 E-value=2e-13 Score=106.02 Aligned_cols=68 Identities=22% Similarity=0.292 Sum_probs=60.0
Q ss_pred CCchHHHHHHHHHhcCCceeEEEee----cCCeEEEEEEECC-eeEEEEeccCHHHHHHHHHHHHHHHhhhcC
Q 017515 204 QPQPVTLLFKLCQKNGKQVDIKHWR----KNRKNIASVYVDG-SFVASASSEQKEIAKLNAAREALEKLAQSM 271 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~~~y~~~~----~~~~f~~~v~v~g-~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 271 (370)
..|||+.||||||++...|.|++.. |.+.|++.|+|+| ..++.|.|.|||+||++||+.||+.|....
T Consensus 5 ~~d~Kt~LqE~~Qk~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 77 (99)
T 1whq_A 5 SSGIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRIN 77 (99)
T ss_dssp CCSSHHHHHHHHHHTTCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHCCCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhC
Confidence 3599999999999994478998843 4578999999999 799999999999999999999999997643
No 58
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.45 E-value=4.2e-13 Score=98.54 Aligned_cols=63 Identities=27% Similarity=0.276 Sum_probs=56.2
Q ss_pred CchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515 205 PQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 205 ~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 269 (370)
.|||+.||||||+ ...|.|+++. |.+.|+++|.|+|..+ +|.|.|||+||++||+.||+.|..
T Consensus 4 ~d~Ks~Lqe~~q~-~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 4 VLPKNALMQLNEI-KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSSHHHHHHHHHH-CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHcC-CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhc
Confidence 4899999999996 4578898864 5689999999999886 999999999999999999999875
No 59
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.44 E-value=2.2e-13 Score=106.63 Aligned_cols=69 Identities=22% Similarity=0.085 Sum_probs=59.4
Q ss_pred cCCchHHHHHHHHHhcCC-ceeEEEee----cCCeEEEEEEECCeeEEEEec-cCHHHHHHHHHHHHHHHhhhcC
Q 017515 203 QQPQPVTLLFKLCQKNGK-QVDIKHWR----KNRKNIASVYVDGSFVASASS-EQKEIAKLNAAREALEKLAQSM 271 (370)
Q Consensus 203 ~~~~p~~~L~e~~~k~~~-~~~y~~~~----~~~~f~~~v~v~g~~~~~g~g-~skk~Ak~~AA~~AL~~L~~~~ 271 (370)
...|||+.||||||++++ .|.|++.. |.+.|+++|+|+|..++.|.| .|||+||++||+.||+.|....
T Consensus 15 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~ 89 (103)
T 2l2n_A 15 NCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSS 89 (103)
T ss_dssp ----CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhccc
Confidence 456999999999999998 57899886 447899999999999999999 9999999999999999997653
No 60
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.41 E-value=7.3e-13 Score=100.86 Aligned_cols=67 Identities=25% Similarity=0.323 Sum_probs=58.9
Q ss_pred CchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCCC
Q 017515 205 PQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPV 273 (370)
Q Consensus 205 ~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~ 273 (370)
.++++.||||||+++ .|.|+++. +.+.|+++|.|+|..+ .|.|.|||+||++||+.||..|....+.
T Consensus 14 ~~~K~~LqEl~Qk~~-~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~~ 85 (91)
T 2l33_A 14 KHGKNPVMELNEKRR-GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDTPL 85 (91)
T ss_dssp SSTTCHHHHHHHHCS-SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCCCC
T ss_pred cCCCCHHHHHHHhCC-CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhhcCCc
Confidence 378999999999999 88998864 4579999999999886 9999999999999999999999755443
No 61
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.41 E-value=6.3e-13 Score=107.67 Aligned_cols=68 Identities=21% Similarity=0.154 Sum_probs=61.5
Q ss_pred cCCchHHHHHHHHHhcCC-ceeEEEee--cCCeEEEEEEECCeeEEEEec-cCHHHHHHHHHHHHHHHhhhc
Q 017515 203 QQPQPVTLLFKLCQKNGK-QVDIKHWR--KNRKNIASVYVDGSFVASASS-EQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 203 ~~~~p~~~L~e~~~k~~~-~~~y~~~~--~~~~f~~~v~v~g~~~~~g~g-~skk~Ak~~AA~~AL~~L~~~ 270 (370)
...|||+.||||||+++. .|.|+++. |.+.|++.|+|+|..++.|.| .|||+||++||+.||..|...
T Consensus 24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~ 95 (128)
T 1whn_A 24 PQITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLP 95 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEECSSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred cCCCHHHHHHHHHHHcCCCCCeEEEEeecCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhcc
Confidence 356999999999999998 57898764 678999999999999999999 999999999999999999644
No 62
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.40 E-value=9.1e-13 Score=104.77 Aligned_cols=68 Identities=21% Similarity=0.145 Sum_probs=60.2
Q ss_pred CchHHHHHHHHHhcCCceeEEEee----cCCeEEEEEEE-----CCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCC
Q 017515 205 PQPVTLLFKLCQKNGKQVDIKHWR----KNRKNIASVYV-----DGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272 (370)
Q Consensus 205 ~~p~~~L~e~~~k~~~~~~y~~~~----~~~~f~~~v~v-----~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 272 (370)
.|||+.||||||++++.|.|++.. |.+.|++.|+| +|..++.|.|.|||+|++.||+.||+.|.....
T Consensus 26 ~d~Kt~LqE~~Qk~~~~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~~~ 102 (113)
T 1uil_A 26 ENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGV 102 (113)
T ss_dssp HHHHHHHHHHHHHSCCCCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHCCCCCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhcCC
Confidence 489999999999999988898433 56799999999 588999999999999999999999999986643
No 63
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.39 E-value=5.3e-13 Score=105.18 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=58.1
Q ss_pred CCchHHHHHHHHHhcCCceeEEEeecC----CeEEEEEEECCe-eEEEEeccCHHHHHHHHHHHHHHHhh
Q 017515 204 QPQPVTLLFKLCQKNGKQVDIKHWRKN----RKNIASVYVDGS-FVASASSEQKEIAKLNAAREALEKLA 268 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~~~y~~~~~~----~~f~~~v~v~g~-~~~~g~g~skk~Ak~~AA~~AL~~L~ 268 (370)
..||++.||||+|+.+..|.|.++..| +.|++.|+|+|. .+|.|.|.|||+|+|+||+.||..+.
T Consensus 7 ~~D~KT~LQE~~Q~~~~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~ 76 (117)
T 1t4o_A 7 DMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK 76 (117)
T ss_dssp CTTHHHHHHHHHCCGGGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred CCCchHHHHHHHcCCCCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 359999999999996667889987644 689999999999 99999999999999999999998774
No 64
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.38 E-value=1.6e-12 Score=100.60 Aligned_cols=64 Identities=27% Similarity=0.242 Sum_probs=57.5
Q ss_pred CCchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515 204 QPQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 269 (370)
..|||+.||||||++ ..|.|+++. |.+.|++.|+|+|..+ .|.|.|||+||++||+.||..|..
T Consensus 15 ~~d~Kt~LqE~~Q~~-~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 15 AIDLMNALMRLNQIR-PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp SSSCTHHHHHHHHHS-CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhcC-CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCC
Confidence 469999999999996 567898864 5689999999999987 999999999999999999999964
No 65
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.33 E-value=3e-12 Score=101.36 Aligned_cols=63 Identities=25% Similarity=0.201 Sum_probs=56.5
Q ss_pred CCchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcC
Q 017515 204 QPQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSM 271 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 271 (370)
..|||+.||||||+ |.|+++. +.+.|+++|+|+|..+ +|.|.|||+||++||+.||+.|....
T Consensus 36 ~kd~Ks~LQE~~q~----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~ 103 (114)
T 2ljh_A 36 PKNTVAMLNELRHG----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQFK 103 (114)
T ss_dssp CSCHHHHHHHHCSC----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCT
T ss_pred CCCHHHHHHHHccC----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcCC
Confidence 46999999999985 8898864 4579999999999999 99999999999999999999997654
No 66
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.28 E-value=1.4e-11 Score=89.86 Aligned_cols=62 Identities=29% Similarity=0.388 Sum_probs=53.8
Q ss_pred CCchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 204 QPQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
.+||++.||||+ ..|.|+++. |.+.|+++|.|+|..+ +|.|.|||+||++||+.||..|...
T Consensus 3 ~knp~s~L~E~~----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 69 (71)
T 2b7v_A 3 GKNPVMILNELR----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp SSCHHHHHHHHC----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 469999999993 467898865 4579999999999865 9999999999999999999998653
No 67
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.20 E-value=2.5e-11 Score=109.46 Aligned_cols=68 Identities=26% Similarity=0.411 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 291 ~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
.|||+.|+++++. +..|.|+++.++||+|.+.|+++|.| +|.. ..|.|+|| |+|||.||+.||+.|..
T Consensus 4 ~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v---~g~~-~~G~G~SK-K~Aeq~AA~~al~~l~~ 71 (236)
T 2l3j_A 4 VLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEV---NGQV-FEGSGPTK-KKAKLHAAEKALRSFVQ 71 (236)
T ss_dssp CCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEE---TTEE-EEEEESHH-HHHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEE---CCEE-EEEecCCh-HHHHHHHHHHHHHHHHh
Confidence 3678888888865 46799999988999999999999999 6766 49999999 99999999999999975
No 68
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.18 E-value=9.4e-11 Score=86.26 Aligned_cols=62 Identities=27% Similarity=0.306 Sum_probs=51.6
Q ss_pred CCchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 204 QPQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
.+||++.|+|++ ..|.|++.. |++.|+++|.|+|..+ .|.|.|||+||++||+.||..|...
T Consensus 6 ~K~pl~~L~q~~----~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 6 GKNPVMELNEKR----RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp CCCHHHHHHHHS----TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHcC----CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHcc
Confidence 346666666653 478898865 5579999999999888 9999999999999999999999654
No 69
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.16 E-value=7.4e-11 Score=107.60 Aligned_cols=65 Identities=29% Similarity=0.284 Sum_probs=58.5
Q ss_pred chHHHHHHHHHhcCC-ceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 206 QPVTLLFKLCQKNGK-QVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 206 ~p~~~L~e~~~k~~~-~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
||++.||||||+++. .|.|+++. +.+.|+|+|+++|..++.|.|.|||+||+.||+.||+.|...
T Consensus 180 dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 250 (252)
T 1o0w_A 180 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLKE 250 (252)
T ss_dssp CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhhc
Confidence 899999999999988 68998865 447999999999999999999999999999999999999643
No 70
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.16 E-value=7.1e-11 Score=105.63 Aligned_cols=63 Identities=21% Similarity=0.202 Sum_probs=56.9
Q ss_pred chHHHHHHHHHhcCC-ceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515 206 QPVTLLFKLCQKNGK-QVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 206 ~p~~~L~e~~~k~~~-~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 269 (370)
||++.||||||+++. .|.|+++. |.+.|+|+|+++|. ++.|.|.|||+||+.||+.||+.|..
T Consensus 151 ~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~~AA~~AL~~L~~ 219 (221)
T 2nug_A 151 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLEE 219 (221)
T ss_dssp CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHhhc
Confidence 899999999999988 47898764 44789999999999 99999999999999999999999863
No 71
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=98.99 E-value=4.1e-11 Score=113.35 Aligned_cols=68 Identities=26% Similarity=0.279 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhcCCCC-CceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 289 EIEAAKQKLHELCGKKKWPK-PSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~-P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
...|||+.||||||++++.. |.|.++.++|| |+++|.+ +|..++.|.|+|| |+|||.||+.||+.|+.
T Consensus 252 ~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i---~~~~~g~G~G~SK-K~AEq~AA~~AL~~L~~ 320 (341)
T 3rv0_A 252 LNKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKI---GDILLDEAEGNSI-REAEHRAAMKVLENDEL 320 (341)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred cccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEE---CCEEEEEEEeCCH-HHHHHHHHHHHHHHhhh
Confidence 45799999999999998754 69999877776 9999999 5889999999999 99999999999998874
No 72
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=98.97 E-value=6e-11 Score=107.80 Aligned_cols=64 Identities=27% Similarity=0.189 Sum_probs=0.0
Q ss_pred chHHHHHHHHHhcCC-ceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515 206 QPVTLLFKLCQKNGK-QVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 206 ~p~~~L~e~~~k~~~-~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 269 (370)
|||+.||||||+++. .|.|+... +.+.|+|+|+++|+.+++|.|.|||+||++||+.||+.|..
T Consensus 178 dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 178 DYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHc
Confidence 899999999999987 56898764 34689999999999999999999999999999999998854
No 73
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=98.91 E-value=1.3e-10 Score=105.45 Aligned_cols=66 Identities=23% Similarity=0.058 Sum_probs=0.0
Q ss_pred chHHHHHHHHHhcCC-ceeEEEee----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcC
Q 017515 206 QPVTLLFKLCQKNGK-QVDIKHWR----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSM 271 (370)
Q Consensus 206 ~p~~~L~e~~~k~~~-~~~y~~~~----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 271 (370)
|||+.||||||+++. .|.|++.. |.+.|+|+|+++|+.+++|.|.|||+||+.||+.||+.|....
T Consensus 163 dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~~~ 233 (242)
T 2a11_A 163 DWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLD 233 (242)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhhcc
Confidence 899999999999987 68898775 4468999999999999999999999999999999999997543
No 74
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=98.64 E-value=2.2e-08 Score=91.90 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhcC
Q 017515 292 AAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALREST 367 (370)
Q Consensus 292 ~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~~ 367 (370)
+||+.|+|++|.... .+.| ...|+.|.+.|+|+|.| +++.+++|.|+|| |+|||.||+.||+.|+..+
T Consensus 198 ~~k~~l~el~~~~~~-~~~~---~~~~~~~~~~f~v~v~v---~~~~~~~G~G~Sk-K~Aeq~AA~~AL~~l~~~~ 265 (265)
T 3c4b_A 198 VPRSPVRELLEMEPE-TAKF---SPAERTYDGKVRVTVEV---VGKGKFKGVGRSY-RIAKSAAARRALRSLKANQ 265 (265)
T ss_dssp SCCCHHHHHHHHCTT-TEEE---CCCEECTTSCEEEEEEE---TTTEEEEEEESSH-HHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHhccC-Ccee---eeccccCCCcEEEEEEE---ecceEEEEeeCCH-HHHHHHHHHHHHHHHhhCc
Confidence 455555666555431 2223 23456789999999999 6888999999999 9999999999999998653
No 75
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=97.29 E-value=0.00038 Score=53.77 Aligned_cols=74 Identities=12% Similarity=0.182 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHhcC-----CCCCceEEecccCCCCCcceEEEEEEEecC--CeEEEeecCCCchhHHHHHHHHHHHHHH
Q 017515 291 EAAKQKLHELCGKKK-----WPKPSYKIEKDEGPSHDKKFMSAVQIATTD--GVLFITGDEKSRVKDAENSAASMMLRAL 363 (370)
Q Consensus 291 ~~~ks~L~e~~~k~~-----~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~--~~~~~~g~g~skkk~A~~~AA~~~l~~l 363 (370)
.+.++.|+.||++.- ...|.|.+...... ...| |+|.+-... ..+++.-. .|| |.||+.||.+|...|
T Consensus 4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~--~~~~-c~v~LP~~splr~i~g~~~-~sk-~~AK~sAAf~Ac~~L 78 (102)
T 2kou_A 4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEF--GGTI-CRITLPANAPISEIESSLL-PST-EAAKKDACLKAVHEL 78 (102)
T ss_dssp SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGG--GCEE-EEEECCTTCSSCCEEEEEE-SSH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccCccceEEEeEeecC--CCeE-EEEECCCCCCCCeeeCCcc-ccH-HHHHHHHHHHHHHHH
Confidence 478999999999863 25688886543221 2356 888874321 13444444 777 999999999999999
Q ss_pred hhcCCC
Q 017515 364 RESTYL 369 (370)
Q Consensus 364 ~~~~~~ 369 (370)
.+.|.|
T Consensus 79 ~~~G~L 84 (102)
T 2kou_A 79 HNLGVL 84 (102)
T ss_dssp HHHCSC
T ss_pred HHCCCC
Confidence 988865
No 76
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=95.52 E-value=0.048 Score=41.81 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHhcC------CceeEEEee---cCCeEEEEEEECC-----eeEEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 205 PQPVTLLFKLCQKNG------KQVDIKHWR---KNRKNIASVYVDG-----SFVASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 205 ~~p~~~L~e~~~k~~------~~~~y~~~~---~~~~f~~~v~v~g-----~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
.+.++.|+.||++.. ..|.|.... .++.| |+|.+=. ...|.. -.||+.||+.||-.|...|-+.
T Consensus 4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~~~-c~v~LP~~splr~i~g~~-~~sk~~AK~sAAf~Ac~~L~~~ 81 (102)
T 2kou_A 4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTI-CRITLPANAPISEIESSL-LPSTEAAKKDACLKAVHELHNL 81 (102)
T ss_dssp SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGGGCEE-EEEECCTTCSSCCEEEEE-ESSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccCccceEEEeEeecCCCeE-EEEECCCCCCCCeeeCCc-cccHHHHHHHHHHHHHHHHHHC
Confidence 367899999999864 257777432 45677 8988732 233333 4999999999999999999766
Q ss_pred C
Q 017515 271 M 271 (370)
Q Consensus 271 ~ 271 (370)
+
T Consensus 82 G 82 (102)
T 2kou_A 82 G 82 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 77
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.58 E-value=0.045 Score=41.87 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHhcCCC--CCceEE-ecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhcCC
Q 017515 292 AAKQKLHELCGKKKWP--KPSYKI-EKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTY 368 (370)
Q Consensus 292 ~~ks~L~e~~~k~~~~--~P~y~~-~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~~~ 368 (370)
.||++|+...|.--.. .-+|.+ ...+|+ ..+ .|++++.= =.....+|.|+.| -+||..||-.|++.|+..|.
T Consensus 18 ~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g~-k~K--~~tl~l~W-P~~mef~a~G~rK-~eAE~kAAA~AC~kLK~Lgl 92 (119)
T 2db2_A 18 QPKNLLNSVIGRALGISHAKDKLVYVHTNGP-KKK--KVTLHIKW-PKSVEVEGYGSKK-IDAERQAAAAACQLFKGWGL 92 (119)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHEEEEECCSS-SSE--EEEEEECS-SSCEEEEEEESSH-HHHHHHHHHHHHHHHHHHTS
T ss_pred ChHHHHHHHHHHHHccCchhhheeEEeecCC-cee--EEEEEecC-CCcEEEEeeccch-HHHHHHHHHHHHHHHHHcCc
Confidence 6899998877763211 012322 212343 223 55555521 1347778888888 99999999999999998876
Q ss_pred C
Q 017515 369 L 369 (370)
Q Consensus 369 ~ 369 (370)
+
T Consensus 93 l 93 (119)
T 2db2_A 93 L 93 (119)
T ss_dssp S
T ss_pred c
Confidence 4
No 78
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.83 E-value=1.1 Score=34.34 Aligned_cols=69 Identities=19% Similarity=0.114 Sum_probs=49.0
Q ss_pred cCCchHHHHHHHHHhcCC------ceeEEEeecCCeEEEEEEEC--CeeEEEEeccCHHHHHHHHHHHHHHHhhhcC
Q 017515 203 QQPQPVTLLFKLCQKNGK------QVDIKHWRKNRKNIASVYVD--GSFVASASSEQKEIAKLNAAREALEKLAQSM 271 (370)
Q Consensus 203 ~~~~p~~~L~e~~~k~~~------~~~y~~~~~~~~f~~~v~v~--g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 271 (370)
..+.|++.|+...|..-- .+.|........-.|++.+. -..-.+|.|+.|.+||.+||-.|+..|+...
T Consensus 15 ~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g~k~K~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC~kLK~Lg 91 (119)
T 2db2_A 15 EFPQPKNLLNSVIGRALGISHAKDKLVYVHTNGPKKKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGWG 91 (119)
T ss_dssp TCSCHHHHHHHHHHHHTTHHHHHHHEEEEECCSSSSEEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCChHHHHHHHHHHHHccCchhhheeEEeecCCceeEEEEEecCCCcEEEEeeccchHHHHHHHHHHHHHHHHHcC
Confidence 456899999988876432 12333333334456666664 4456689999999999999999999998764
No 79
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=91.01 E-value=0.36 Score=50.51 Aligned_cols=64 Identities=22% Similarity=0.156 Sum_probs=50.1
Q ss_pred chHHHHHHHHHhcCCceeEEEee----------------cCC-eEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhh
Q 017515 206 QPVTLLFKLCQKNGKQVDIKHWR----------------KNR-KNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268 (370)
Q Consensus 206 ~p~~~L~e~~~k~~~~~~y~~~~----------------~~~-~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~ 268 (370)
+||.+++ ||.|.+..|++.. .++ .|.|.+.+-+-.+.+++-+.||+|||.||..||++|+
T Consensus 18 ~pk~~~~---q~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~~~g 94 (950)
T 3htx_A 18 TPKAIIH---QKFGAKASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDKLG 94 (950)
T ss_dssp CCHHHHH---HTTGGGSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHH---HHhCcceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHHHHHHHHHHHhC
Confidence 6888776 5666667775521 333 7999999977766689999999999999999999998
Q ss_pred hcCC
Q 017515 269 QSMP 272 (370)
Q Consensus 269 ~~~~ 272 (370)
..+.
T Consensus 95 ~~~~ 98 (950)
T 3htx_A 95 IRPQ 98 (950)
T ss_dssp STTT
T ss_pred CCcc
Confidence 6543
No 80
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=89.92 E-value=0.24 Score=51.70 Aligned_cols=66 Identities=27% Similarity=0.380 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHhcCCCCCceEEecc--------cC---CCCC-cceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHH
Q 017515 291 EAAKQKLHELCGKKKWPKPSYKIEKD--------EG---PSHD-KKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASM 358 (370)
Q Consensus 291 ~~~ks~L~e~~~k~~~~~P~y~~~~~--------~g---~~~~-~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~ 358 (370)
..||..+++.. + ..+.|.+.+. .| |... ..|.|.+.+ ++..++ .+.-+-| |+|||.||+.
T Consensus 17 ~~pk~~~~q~~---~-~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~l--p~~~~~-~~~~~~k-kd~eq~aa~~ 88 (950)
T 3htx_A 17 PTPKAIIHQKF---G-AKASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQL--PEFSVV-SNVFKKK-KDSEQSAAEL 88 (950)
T ss_dssp CCCHHHHHHTT---G-GGSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEEC--SSCEEE-CCCBSCH-HHHHHHHHHH
T ss_pred CCHHHHHHHHh---C-cceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeC--CCceEe-cchhhcc-ccHHHHHHHH
Confidence 36777776443 3 2267876432 12 1122 256666666 355555 6887777 9999999999
Q ss_pred HHHHHh
Q 017515 359 MLRALR 364 (370)
Q Consensus 359 ~l~~l~ 364 (370)
||++|+
T Consensus 89 al~~~g 94 (950)
T 3htx_A 89 ALDKLG 94 (950)
T ss_dssp HHTTTT
T ss_pred HHHHhC
Confidence 999987
No 81
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=83.27 E-value=5.1 Score=30.48 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=61.8
Q ss_pred CcchhhhhhHHHHHHHHHHHHHH--HCCCCCcchhhHHHHHhcChHHHHHHHHHcChhHHHhhccchhhHHHHHHHHHhh
Q 017515 67 SYQRLEFIGDAALGLALSNYVFL--AYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVS 144 (370)
Q Consensus 67 ~~erLe~LGdavL~~~v~~~l~~--~~p~~~~~~l~~lr~~lvsn~~La~~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~ 144 (370)
.-.-|.-+||++++++++--|.+ -+|.-. -|-|..|+......||.+.+...
T Consensus 11 tdK~LakfGDSLvNfl~SlALse~lG~Ptg~----------rVPnaSLaiale~agL~~~~pR~---------------- 64 (133)
T 1ztd_A 11 IDKGLAKFGDSLINFLYSLALTEFLGKPTGD----------RVPNASLAIALELTGLSKNLRRV---------------- 64 (133)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTSCCCC----------CCCHHHHHHHHHHHTGGGGCCGG----------------
T ss_pred hcchHHHHhHHHHHHHHHHHHHHHhCCCCCC----------CCCChHHHHHHHHhhhhhcCCcc----------------
Confidence 34578999999999999888854 445432 46788888777777777765211
Q ss_pred ccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHhh
Q 017515 145 QEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192 (370)
Q Consensus 145 ~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~~ll 192 (370)
...--+|+.||+|+=.|+.+-+..+...+++..=+
T Consensus 65 -------------DKh~kGd~aEA~iAyAWleG~is~eEaveilk~nl 99 (133)
T 1ztd_A 65 -------------DKHAKGDYAEALIAKAWLMGLISEREAVEIIKKNL 99 (133)
T ss_dssp -------------GTTCHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTC
T ss_pred -------------cccCccHHHHHHHHHHHHhccccHHHHHHHHHhcC
Confidence 11234899999999999999888776555555433
No 82
>2l6m_A Protein dicer; DSRBD, hydrolase; NMR {Schizosaccharomyces pombe}
Probab=43.19 E-value=1e+02 Score=22.95 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=46.6
Q ss_pred CchHHHHHHHHHhcCC-ceeEEE--ee----c----------CCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHh
Q 017515 205 PQPVTLLFKLCQKNGK-QVDIKH--WR----K----------NRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267 (370)
Q Consensus 205 ~~p~~~L~e~~~k~~~-~~~y~~--~~----~----------~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L 267 (370)
++--+.++++.|+.|+ ...+.. .. + ...|-.++++.|.+++.|.+..++.|+..-...-++.+
T Consensus 23 ~~i~~qi~Q~Lq~QGC~~~~~qCVI~e~~~~~~~L~~~~~~~T~~Y~~S~~~H~~IV~~~Ks~~~~Nsq~im~~~L~~L~ 102 (121)
T 2l6m_A 23 GDIEHKVYQLLKDQGCEDFGTKCVIEEVKSSHKTLLNTELHLTKYYGFSFFRHGNIVAYGKSRKVANAKYIMKQRLLKLL 102 (121)
T ss_dssp SCHHHHHHHHHTTTTCCCEEEEEEEEECCCCSCCSSSSCTTCCEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcHHHhCCeEEEEehhhhhhhHHHhhhhhheeeeeEEEEeCcEEEehhhhhhhhHHHHHHHHHHHHH
Confidence 3456788899999998 433332 21 1 13578899999999999999999999887666555555
Q ss_pred hh
Q 017515 268 AQ 269 (370)
Q Consensus 268 ~~ 269 (370)
.+
T Consensus 103 q~ 104 (121)
T 2l6m_A 103 ED 104 (121)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 83
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=36.46 E-value=32 Score=21.97 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=16.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHhhcCC
Q 017515 343 DEKSRVKDAENSAASMMLRALRESTY 368 (370)
Q Consensus 343 ~g~skkk~A~~~AA~~~l~~l~~~~~ 368 (370)
.+++| |+|++-||. .+..+.+.||
T Consensus 9 tartk-keaekfaai-likvfaelgy 32 (62)
T 2gjh_A 9 TARTK-KEAEKFAAI-LIKVFAELGY 32 (62)
T ss_dssp ECSSH-HHHHHHHHH-HHHHHHHTTC
T ss_pred Eecch-hHHHHHHHH-HHHHHHHhCc
Confidence 36788 999999986 3444455554
No 84
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=35.62 E-value=20 Score=27.06 Aligned_cols=44 Identities=9% Similarity=0.117 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHCC---CCCcchhhHHHHHhcChHHHHHHHHHcChhHHH
Q 017515 80 GLALSNYVFLAYP---QLDPGQLSLLRAANISTEKLARVAVKHGFYKFV 125 (370)
Q Consensus 80 ~~~v~~~l~~~~p---~~~~~~l~~lr~~lvsn~~La~~a~~~gL~~~l 125 (370)
+.-|++|+..+.. ..+-.+| ....-||..++.++|+++|+..|-
T Consensus 19 e~~ia~yil~~~~~~~~~si~el--A~~~~vS~aTv~Rf~kkLGf~gf~ 65 (107)
T 3iwf_A 19 EKKIAQFILNYPHKVVNMTSQEI--ANQLETSSTSIIRLSKKVTPGGFN 65 (107)
T ss_dssp HHHHHHHHHHCHHHHTTCCHHHH--HHHHTSCHHHHHHHHHHHSTTHHH
T ss_pred HHHHHHHHHhCHHHHHHCCHHHH--HHHHCCCHHHHHHHHHHhCCCCHH
Confidence 3556777776543 3343333 456789999999999999999884
No 85
>3k6q_A Putative ligand binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Syntrophomonas wolfei subsp}
Probab=33.26 E-value=1.7e+02 Score=23.16 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCceeEEEeecCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhh
Q 017515 208 VTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268 (370)
Q Consensus 208 ~~~L~e~~~k~~~~~~y~~~~~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~ 268 (370)
...|-++++ ......+...+++ ++++++++..+ .+.|.++.+|...-+...++.-.
T Consensus 41 ~~lL~~~L~--~y~f~~e~i~EdG--s~t~~l~eldi-~~~g~T~eeA~~~li~~l~eYAe 96 (139)
T 3k6q_A 41 EQIIKDLLQ--DLKIHAELSKEDG--IIIGTIDGFDL-VVSGESEQEVIQKLAEDLLEYAQ 96 (139)
T ss_dssp HHHHHHHTT--TCCEEEEEEEETT--EEEEEETTTCC-EEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--cccCceEEEecCC--eEEEEecCcee-EeeCCCHHHHHHHHHHHHHHHHH
Confidence 567888883 3333334444455 47788887654 57788999999988888776643
No 86
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=27.88 E-value=22 Score=27.04 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHCC---CCCcchhhHHHHHhcChHHHHHHHHHcChhHHH
Q 017515 80 GLALSNYVFLAYP---QLDPGQLSLLRAANISTEKLARVAVKHGFYKFV 125 (370)
Q Consensus 80 ~~~v~~~l~~~~p---~~~~~~l~~lr~~lvsn~~La~~a~~~gL~~~l 125 (370)
+.-|++|+..+.. ..+-.+| .+..-||..++.++|+++|+..|-
T Consensus 23 e~~ia~yil~~~~~~~~~si~el--A~~~~vS~aTv~Rf~kklG~~gf~ 69 (111)
T 2o3f_A 23 ERKLADYILAHPHXAIESTVNEI--SALANSSDAAVIRLCXSLGLKGFQ 69 (111)
T ss_dssp HHHHHHHHHHCHHHHHTCCHHHH--HHHTTCCHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHChHHHHhcCHHHH--HHHHCCCHHHHHHHHHHcCCCCHH
Confidence 3456677766532 3444443 456789999999999999998874
No 87
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=21.66 E-value=1.9e+02 Score=19.48 Aligned_cols=43 Identities=7% Similarity=0.156 Sum_probs=27.9
Q ss_pred EEEee-cCCeEEEEEEE-CCeeEEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 224 IKHWR-KNRKNIASVYV-DGSFVASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 224 y~~~~-~~~~f~~~v~v-~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
|+..+ .++.|..++.- ||++++++.|.+-| .+|..++..++..
T Consensus 3 Fei~~~~~G~frfrLka~NGevI~sSe~Y~sk----~~a~~gI~sVk~n 47 (64)
T 3bid_A 3 FEIYKDAKGEYRWRLKAANHEIIAQGEGYTSK----QNCQHAVDLLKST 47 (64)
T ss_dssp EEEEECTTSCEEEEEECTTSCEEEECCCBSCH----HHHHHHHHHHHTC
T ss_pred EEEEECCCCCEEEEEEeCCCCEEEECCCcCCH----HHHHHHHHHHHHh
Confidence 45544 45788888887 89999988875432 2344555555543
Done!