Query 017515
Match_columns 370
No_of_seqs 255 out of 2022
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 15:40:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017515.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017515hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nuga1 a.149.1.1 (A:3-150) RN 100.0 2.7E-36 2E-40 252.6 14.3 137 36-197 2-138 (148)
2 d1o0wa1 a.149.1.1 (A:-1-167) R 100.0 4.2E-35 3.1E-39 251.0 11.4 147 31-198 6-161 (169)
3 d1u61a_ a.149.1.1 (A:) Hypothe 99.8 3.3E-21 2.4E-25 155.3 8.9 117 66-192 6-122 (127)
4 d1o0wa2 d.50.1.1 (A:168-236) R 99.8 3.6E-20 2.6E-24 133.4 8.2 68 292-363 1-68 (69)
5 d2dixa1 d.50.1.1 (A:7-79) Inte 99.8 1.7E-19 1.2E-23 131.2 9.3 70 291-366 2-71 (73)
6 d1di2a_ d.50.1.1 (A:) Double-s 99.8 1.1E-19 8.3E-24 130.5 8.0 67 293-364 2-68 (69)
7 d2nuga2 d.50.1.1 (A:151-218) R 99.8 6.7E-20 4.9E-24 131.5 6.7 68 292-364 1-68 (68)
8 d2cpna1 d.50.1.1 (A:150-225) T 99.8 1.1E-19 7.9E-24 133.3 7.9 70 289-363 7-76 (76)
9 d1ekza_ d.50.1.1 (A:) Staufen, 99.8 2.6E-19 1.9E-23 131.1 5.8 71 289-365 5-75 (76)
10 d1uhza_ d.50.1.1 (A:) staufen 99.8 9.9E-19 7.2E-23 131.7 8.5 71 290-365 5-75 (89)
11 d1qu6a1 d.50.1.1 (A:1-90) dsRN 99.8 4.2E-19 3E-23 134.2 6.1 73 289-366 11-83 (90)
12 d1x49a1 d.50.1.1 (A:8-92) dsRN 99.7 4.9E-19 3.6E-23 132.4 6.1 74 289-367 5-78 (85)
13 d1uila_ d.50.1.1 (A:) ATP-depe 99.7 3.9E-18 2.8E-22 133.8 9.5 80 287-369 22-103 (113)
14 d1x48a1 d.50.1.1 (A:8-83) dsRN 99.7 7.8E-18 5.7E-22 122.8 8.9 68 293-366 1-68 (76)
15 d1whqa_ d.50.1.1 (A:) ATP-depe 99.7 2.4E-18 1.7E-22 132.0 5.8 73 290-368 5-78 (99)
16 d1x47a1 d.50.1.1 (A:8-92) Dgcr 99.7 3.3E-17 2.4E-21 122.4 8.7 70 289-364 7-76 (85)
17 d1qu6a2 d.50.1.1 (A:91-179) ds 99.7 1.3E-17 9.4E-22 125.7 4.9 73 288-366 11-83 (89)
18 d2b7va1 d.50.1.1 (A:1-71) dsRN 99.6 1.3E-16 9.4E-21 114.7 6.3 69 289-367 2-70 (71)
19 d1whna_ d.50.1.1 (A:) tRNA-dih 99.6 1.4E-15 1E-19 121.6 8.7 69 289-364 24-93 (128)
20 d1o0wa2 d.50.1.1 (A:168-236) R 99.6 4.7E-15 3.5E-19 106.1 9.2 62 206-267 1-68 (69)
21 d2dixa1 d.50.1.1 (A:7-79) Inte 99.6 7.1E-15 5.1E-19 106.3 9.6 65 205-270 2-71 (73)
22 d1x48a1 d.50.1.1 (A:8-83) dsRN 99.6 9.1E-15 6.6E-19 106.3 10.2 67 207-273 1-71 (76)
23 d1t4oa_ d.50.1.1 (A:) RNase II 99.5 2.9E-15 2.1E-19 110.5 6.2 71 290-365 5-75 (81)
24 d1qu6a2 d.50.1.1 (A:91-179) ds 99.5 1.1E-14 7.9E-19 109.3 9.1 68 204-271 13-84 (89)
25 d1x47a1 d.50.1.1 (A:8-92) Dgcr 99.5 2.7E-14 2E-18 106.3 10.0 65 204-268 8-76 (85)
26 d1x49a1 d.50.1.1 (A:8-92) dsRN 99.5 1.2E-14 8.6E-19 108.2 8.0 68 205-272 7-79 (85)
27 d2b7ta1 d.50.1.1 (A:1-73) dsRN 99.5 1.1E-14 8E-19 105.0 7.3 66 290-365 6-71 (73)
28 d1qu6a1 d.50.1.1 (A:1-90) dsRN 99.5 1.2E-14 8.7E-19 109.3 7.6 68 205-272 13-85 (90)
29 d2nuga2 d.50.1.1 (A:151-218) R 99.5 3.6E-14 2.7E-18 101.0 8.8 62 206-268 1-68 (68)
30 d2dmya1 d.50.1.1 (A:8-91) Sper 99.5 3.5E-14 2.5E-18 105.1 8.6 67 289-365 10-76 (84)
31 d1di2a_ d.50.1.1 (A:) Double-s 99.5 7.1E-14 5.2E-18 99.7 9.5 61 207-268 2-68 (69)
32 d2cpna1 d.50.1.1 (A:150-225) T 99.5 9.4E-14 6.9E-18 101.1 9.8 63 204-267 8-76 (76)
33 d1whqa_ d.50.1.1 (A:) ATP-depe 99.5 6.5E-14 4.8E-18 106.9 8.7 68 205-272 6-78 (99)
34 d1ekza_ d.50.1.1 (A:) Staufen, 99.5 2E-14 1.5E-18 104.6 4.9 65 204-269 6-75 (76)
35 d1uhza_ d.50.1.1 (A:) staufen 99.4 2.4E-13 1.8E-17 101.7 10.0 64 205-269 6-75 (89)
36 d1uila_ d.50.1.1 (A:) ATP-depe 99.4 6.1E-13 4.5E-17 103.7 9.5 68 205-272 26-102 (113)
37 d1whna_ d.50.1.1 (A:) tRNA-dih 99.3 1.3E-12 9.3E-17 104.1 8.8 68 202-269 23-94 (128)
38 d2b7va1 d.50.1.1 (A:1-71) dsRN 99.3 2.5E-12 1.8E-16 91.9 7.5 62 204-270 3-69 (71)
39 d1t4oa_ d.50.1.1 (A:) RNase II 99.2 6.1E-12 4.4E-16 92.3 6.8 65 204-268 5-74 (81)
40 d2b7ta1 d.50.1.1 (A:1-73) dsRN 99.1 2.3E-10 1.6E-14 81.9 9.0 59 206-269 8-71 (73)
41 d2dmya1 d.50.1.1 (A:8-91) Sper 99.0 7E-10 5.1E-14 81.5 8.9 62 204-270 11-77 (84)
42 d1ztda1 a.149.1.2 (A:2-125) Hy 80.6 4.4 0.00032 28.7 7.9 84 70-192 5-90 (124)
43 d2uube2 d.50.1.2 (E:5-73) Ribo 42.2 25 0.0018 22.7 5.2 39 232-270 23-65 (69)
44 d2dsya1 d.304.1.2 (A:3-82) Hyp 38.0 16 0.0012 24.4 3.8 52 210-263 4-55 (80)
45 d2qale2 d.50.1.2 (E:9-77) Ribo 34.5 20 0.0015 23.3 3.7 39 232-270 23-65 (69)
46 d2o3fa1 a.4.1.20 (A:1-83) Puta 33.9 7.2 0.00052 26.4 1.4 43 81-125 21-66 (83)
47 d2ywqa1 d.204.1.1 (A:1-95) Rib 30.6 70 0.0051 21.3 6.6 47 318-365 47-93 (95)
48 d1z1ba1 d.10.1.4 (A:11-59) lam 28.4 38 0.0028 20.2 3.9 35 231-267 12-46 (49)
49 d1pkpa2 d.50.1.2 (A:4-77) Ribo 27.9 35 0.0025 22.3 4.1 38 232-269 29-70 (74)
50 d1ijwc_ a.4.1.2 (C:) HIN recom 24.9 14 0.001 22.0 1.4 34 91-124 3-36 (47)
51 d1qnaa1 d.129.1.1 (A:17-115) T 23.3 69 0.005 21.9 5.2 38 327-368 53-90 (99)
52 d1ngna_ a.96.1.2 (A:) Mismatch 20.7 47 0.0034 24.5 4.1 55 161-218 16-70 (144)
No 1
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]}
Probab=100.00 E-value=2.7e-36 Score=252.61 Aligned_cols=137 Identities=32% Similarity=0.459 Sum_probs=128.7
Q ss_pred HHHHHHHcCcccCChhHHHHHhcCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHHHH
Q 017515 36 VFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARV 115 (370)
Q Consensus 36 ~~~le~~lgy~f~~~~Ll~~AlTh~s~~~~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La~~ 115 (370)
++.||++|||+|+|++||.+||||+|+....+|||||||||+||+++++.|+|.+||+.++|.|+.+|+.+|||.+|+.+
T Consensus 2 l~~le~~igy~F~n~~LL~~Alth~S~~~~~~~erLeflGDavl~~~v~~~l~~~~p~~~~g~lt~~r~~lvsn~~La~~ 81 (148)
T d2nuga1 2 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLL 81 (148)
T ss_dssp HHHHHHHHTCCCSSHHHHHHHHBCTTTCSSSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHCCccCCHHHHHHHhcCcCcCCCcchHHHHHHHHHHHhhhhHHHHHhhCCCcchHHHHHHHHHhhhhhHhhhH
Confidence 57899999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHcChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhhhh
Q 017515 116 AVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI 195 (370)
Q Consensus 116 a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~~ll~~~ 195 (370)
|.++||++|++.++. ...+++++|+|||+|||||+|+|++...+++++.+++.+.
T Consensus 82 a~~lgl~~~i~~~~~-------------------------~~~~kilad~~EAiiGAiylD~g~~~~~~~~~i~~l~~~~ 136 (148)
T d2nuga1 82 AQKLELHKFIRIKRG-------------------------KINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKED 136 (148)
T ss_dssp HHTTTGGGTCBSCTT-------------------------CCCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHhccc-------------------------cchhhhhHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHH
Confidence 999999999987642 3468999999999999999999999988889999999887
Q ss_pred hh
Q 017515 196 VT 197 (370)
Q Consensus 196 i~ 197 (370)
+.
T Consensus 137 i~ 138 (148)
T d2nuga1 137 IL 138 (148)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 2
>d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=4.2e-35 Score=251.01 Aligned_cols=147 Identities=33% Similarity=0.461 Sum_probs=129.0
Q ss_pred hhHHHHHHHHHHcCcccCChhHHHHHhcCCCCCC---------CCCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhH
Q 017515 31 EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---------STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSL 101 (370)
Q Consensus 31 ~~~~~~~~le~~lgy~f~~~~Ll~~AlTh~s~~~---------~~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~ 101 (370)
...+.++.||++|||+|+|++||.+||||||+.. ..+|||||||||+||+++++++++.+||+.++|.++.
T Consensus 6 ~~~~~~~~~e~~lgy~F~n~~Ll~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~~~v~~~l~~~~~~~~~g~ls~ 85 (169)
T d1o0wa1 6 SERKIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLAR 85 (169)
T ss_dssp HHHHHHHHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHCCccCCHHHHHHHccCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHH
Confidence 3446889999999999999999999999999732 5789999999999999999999999999999999999
Q ss_pred HHHHhcChHHHHHHHHHcChhHHHhhccchhhHHHHHHHHHhhccccccccCCCcCCchHHHHHHHHHHHHHhhcCCcCh
Q 017515 102 LRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDL 181 (370)
Q Consensus 102 lr~~lvsn~~La~~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~ 181 (370)
+|+.+|+|.+|+.+|.++||++|++.++... .... ...++++||+|||+|||||+|+|++.
T Consensus 86 ~~~~lv~~~~La~ia~~~~l~~~i~~~~~~~------------------~~~~-~~~~kvlad~~EAliGAiylD~G~~~ 146 (169)
T d1o0wa1 86 VKSAAASEEVLAMVSRKMNLGKFLFLGKGEE------------------KTGG-RDRDSILADAFEALLAAIYLDQGYEK 146 (169)
T ss_dssp HHHHHTSHHHHHHHHHHTTHHHHCBCCHHHH------------------HTTG-GGCHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHhhHHHHHHHHHHhChHhhhhcCChhh------------------hcCC-ccccchhccHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999999998875421 0111 34689999999999999999999876
Q ss_pred HHHHHHHHHhhhhhhhh
Q 017515 182 QKLWMIFRGLLEPIVTL 198 (370)
Q Consensus 182 ~~~~~v~~~ll~~~i~~ 198 (370)
+. +|+.+++.|.++.
T Consensus 147 ~~--~~i~~~~~~~l~~ 161 (169)
T d1o0wa1 147 IK--ELFEQEFEFYIEK 161 (169)
T ss_dssp HH--HHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHH
Confidence 55 7888889888763
No 3
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]}
Probab=99.83 E-value=3.3e-21 Score=155.32 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=87.5
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHHHCCCCCcchhhHHHHHhcChHHHHHHHHHcChhHHHhhccchhhHHHHHHHHHhhc
Q 017515 66 TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ 145 (370)
Q Consensus 66 ~~~erLe~LGdavL~~~v~~~l~~~~p~~~~~~l~~lr~~lvsn~~La~~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~ 145 (370)
.|...||||||+||+++++.||+.++| .++|.|+.+|+.+||+++|+.++.++||++|+.........| .++
T Consensus 6 ~~~~~LefLGDAVl~l~v~~~L~~~~p-~~eg~Lt~~r~~lV~~~~la~~a~~l~l~~~l~~~e~~~~~~-------Grn 77 (127)
T d1u61a_ 6 LNSLALAYMGDAVYEQYIRYHLLQKGK-VRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRR-------GRN 77 (127)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHCC-SCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHH-------HTC
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHhCC-CCccHHHHHHHHHccHHHHHHHHHHhCcHHHhhhcccccccc-------CCc
Confidence 577889999999999999999999999 789999999999999999999999999999987543222111 111
Q ss_pred cccccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHhh
Q 017515 146 EDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192 (370)
Q Consensus 146 ~~~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~~ll 192 (370)
..............+.+||+|||+|||+|+|+|++ ++++++...+
T Consensus 78 ~~~~~~~k~~~~~~y~lad~fEAliGalYLd~~~e--~~~~~i~~~~ 122 (127)
T d1u61a_ 78 ANSGTVPKNTDVQTYRHSTAFEALIGYHHLLNNRE--RLDEIVYKAI 122 (127)
T ss_dssp CCSSCCCTTCCHHHHHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHH
T ss_pred ccCCCCCcccchhHHHhhhHHHHHHHHHHHcCCHH--HHHHHHHHHH
Confidence 11000000002234579999999999999999965 4446666554
No 4
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.80 E-value=3.6e-20 Score=133.44 Aligned_cols=68 Identities=26% Similarity=0.445 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHH
Q 017515 292 AAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRAL 363 (370)
Q Consensus 292 ~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l 363 (370)
||||.||||||+++++.|.|.++.++||+|.+.|+++|.+ +|..++.|.|+|| |+|||.||+.||+.|
T Consensus 1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v---~~~~~~~g~g~sK-K~Aeq~AA~~aL~~L 68 (69)
T d1o0wa2 1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRV---NGKTIATGKGRTK-KEAEKEAARIAYEKL 68 (69)
T ss_dssp CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEE---TTEEEEEEEESSH-HHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCCCEEEEEEeeCCCCCceEEEEEEE---CCEEEEEEEeCCH-HHHHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999 7899999999999 999999999999987
No 5
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.79 E-value=1.7e-19 Score=131.16 Aligned_cols=70 Identities=29% Similarity=0.352 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhc
Q 017515 291 EAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRES 366 (370)
Q Consensus 291 ~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~ 366 (370)
+||++.||||||++++ .|.|.++.++||+|++.|+|+|.| ++ .++.|.|+|| |+|||.||+.||+.|...
T Consensus 2 K~Pis~L~E~~qk~~~-~p~y~~~~~~Gp~h~~~F~~~v~v---~~-~~~~g~g~sK-K~Aeq~AA~~al~~L~~~ 71 (73)
T d2dixa1 2 KTPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTV---GD-ITCTGEGTSK-KLAKHRAAEAAINILKAN 71 (73)
T ss_dssp CCHHHHHHHHHHHTTC-CCEEEEEEEECSSSSCEEEEEEEE---TT-EEEEECSSCT-THHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHhCCC-CCEEEEeeeeCCCCCcEEEEEEEE---EE-EEEEeccccH-HHHHHHHHHHHHHHHHhc
Confidence 5899999999999987 799999989999999999999999 44 5889999999 999999999999999854
No 6
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}
Probab=99.79 E-value=1.1e-19 Score=130.52 Aligned_cols=67 Identities=27% Similarity=0.554 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHh
Q 017515 293 AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALR 364 (370)
Q Consensus 293 ~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~ 364 (370)
||+.||||||+++++.|.|+++.++|++|.+.|+|+|.| ++ +..+|.|+|| |+|||.||..||+.|+
T Consensus 2 Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v---~~-~~~~g~g~sK-K~Aeq~AA~~aL~~L~ 68 (69)
T d1di2a_ 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRV---ET-FVETGSGTSK-QVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEE---TT-EEEEEEESSH-HHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCCCeEEEEEeeCCCCCcceEEEEEE---ee-EEEecCcCcH-HHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999 45 5569999999 9999999999999986
No 7
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=99.79 E-value=6.7e-20 Score=131.46 Aligned_cols=68 Identities=34% Similarity=0.531 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHh
Q 017515 292 AAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALR 364 (370)
Q Consensus 292 ~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~ 364 (370)
|||+.||||||+++++.|.|+++.++||+|.+.|+|+|.| ++ ..++|.|+|| |.|||.||+.||+.|+
T Consensus 1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v---~~-~~~~g~g~sK-K~Aeq~AA~~aL~~Lk 68 (68)
T d2nuga2 1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKI---KE-YRTLGEGKSK-KEAEQRAAEELIKLLE 68 (68)
T ss_dssp CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEE---TT-EEEEEEESSH-HHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHcCCCCCEEEEEEeeCCCCCcEEEEEEEE---CC-EEEEEecCCH-HHHHHHHHHHHHHHhC
Confidence 7999999999999999999999999999999999999999 45 5789999998 9999999999999874
No 8
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.79 E-value=1.1e-19 Score=133.33 Aligned_cols=70 Identities=29% Similarity=0.470 Sum_probs=65.3
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHH
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRAL 363 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l 363 (370)
...|||+.||||||+++++.|.|+++.+.|++|.+.|+|.|.+ +.+.++|.|+|| |+|||.||+.||..|
T Consensus 7 ~~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v----~~~~~~g~G~SK-K~Aeq~AA~~aL~~L 76 (76)
T d2cpna1 7 SECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRV----ERFIEIGSGTSK-KLAKRNAAAKMLLRV 76 (76)
T ss_dssp CCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEE----TTEEEEEEESSH-HHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCCEEEEeeeeccCCCccEEEEEEe----cceeeccccccH-HHHHHHHHHHHHHhC
Confidence 4569999999999999999999999999999999999999999 446799999999 999999999999876
No 9
>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.76 E-value=2.6e-19 Score=131.08 Aligned_cols=71 Identities=27% Similarity=0.512 Sum_probs=65.6
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
..+||++.||||||+++++ |.|.++.++||+|.+.|+|+|.| +..+++|.|.|| |+|||.||..||..|++
T Consensus 5 ~~k~Pvs~L~E~~q~~~~~-~~y~~~~~~G~~h~~~F~~~v~v----~~~~~~g~G~SK-K~Aeq~AA~~al~~L~~ 75 (76)
T d1ekza_ 5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIV----GSIVTEGEGNGK-KVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEE----TTEEEEECCCST-TSSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCC-CeEEEEEeeCCCCCeEEEEEEEE----eeeEeeeccCcH-HHHHHHHHHHHHHHHHc
Confidence 3579999999999999987 89999999999999999999999 346899999999 99999999999999975
No 10
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.75 E-value=9.9e-19 Score=131.73 Aligned_cols=71 Identities=23% Similarity=0.336 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 290 IEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 290 ~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
..||++.||||||+++|+.|.|+++.++|++|.+.|+|+|.| ++. ..+|.|.|| |+||+.||+.||+.|+.
T Consensus 5 ~~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v---~~~-~~~g~g~SK-K~Ae~~AA~~aL~~l~~ 75 (89)
T d1uhza_ 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKV---GNE-VATGTGPNK-KIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEE---TTE-EEEEEESSH-HHHHHHHHHHHHHHHTS
T ss_pred CCCcHHHHHHHHHhcCCCCCEEEeccccccCCceeEEEEEEE---eee-eccccchHH-HHHHHHHHHHHHHHhCc
Confidence 459999999999999999999999999999999999999999 565 469999999 99999999999999963
No 11
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.75 E-value=4.2e-19 Score=134.19 Aligned_cols=73 Identities=29% Similarity=0.435 Sum_probs=67.3
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhc
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRES 366 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~ 366 (370)
...+||+.||||||++++ .|.|.++.++||+|.+.|+|+|.| +|..+++|.|+|| |+||+.||+.||+.|.+.
T Consensus 11 ~~~~y~s~LqE~~Qk~~~-~p~y~~~~~~Gp~h~~~F~v~v~v---~~~~~~~g~G~sK-K~Aeq~AA~~aL~~L~~~ 83 (90)
T d1qu6a1 11 SAGFFMEELNTYRQKQGV-VLKYQELPNSGPPHDRRFTFQVII---DGREFPEGEGRSK-KEAKNAAAKLAVEILNKE 83 (90)
T ss_dssp SSCSHHHHHHHHHHHHTC-CCEEEEEESCBTTTBCCEEEEEES---SSSCCCEEECCSS-HHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHhCC-CCcEEEEEeeCCCCCceEEEEEEE---CceeeeccCCCcH-HHHHHHHHHHHHHHHHhh
Confidence 456999999999999987 689999999999999999999999 6888899999999 999999999999999854
No 12
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.75 E-value=4.9e-19 Score=132.41 Aligned_cols=74 Identities=26% Similarity=0.338 Sum_probs=68.2
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhcC
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALREST 367 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~~ 367 (370)
.+.|||+.||||||++++. |.|.++.++||+|.+.|+|+|.| +|..++.|.|+|| |+|||.||+.||..|.+.+
T Consensus 5 ~~~~yk~~L~E~~Qk~~~~-~~y~~~~~~Gp~h~~~F~~~v~v---~g~~~~~g~g~sK-K~Aeq~AA~~aL~~L~~~~ 78 (85)
T d1x49a1 5 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLI---DEKEFPEAKGRSK-QEARNAAAKLAVDILDNEN 78 (85)
T ss_dssp CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEE---SSCCCCCEEESSH-HHHHHHHHHHHHHHHTTTC
T ss_pred CchhHHHHHHHHHHhcCCC-CeEEEEEecCCCCCceEEEEEec---CceEeeccccccH-HHHHHHHHHHHHHHHHHcC
Confidence 4579999999999999984 89999989999999999999999 6888899999999 9999999999999998643
No 13
>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.73 E-value=3.9e-18 Score=133.78 Aligned_cols=80 Identities=25% Similarity=0.412 Sum_probs=70.6
Q ss_pred hhhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEec--CCeEEEeecCCCchhHHHHHHHHHHHHHHh
Q 017515 287 KFEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATT--DGVLFITGDEKSRVKDAENSAASMMLRALR 364 (370)
Q Consensus 287 ~~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~--~~~~~~~g~g~skkk~A~~~AA~~~l~~l~ 364 (370)
.+...|||+.||||||+++.+ |.|++. +.||+|.+.|+|+|.|.+. +++++++|.|+|| |+|||.||+.||+.|.
T Consensus 22 ~wt~~n~Ks~LqE~~Qk~k~~-p~Y~i~-~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G~G~sK-K~AEq~AA~~~l~~L~ 98 (113)
T d1uila_ 22 NWTLENAKARLNQYFQKEKIQ-GEYKYT-QVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNK-KLAAQSCALSLVRQLY 98 (113)
T ss_dssp CCCHHHHHHHHHHHHHHSCCC-CCCEEE-EESCSTTCEEEEEEEEEETTTTEEEEEECCCSSH-HHHHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHhCCCC-CceEEe-eeccCCCCeEEEEEEEeeeccCCeEEeecccchH-HHHHHHHHHHHHHHHH
Confidence 345679999999999999875 999975 7799999999999999654 4678999999999 9999999999999999
Q ss_pred hcCCC
Q 017515 365 ESTYL 369 (370)
Q Consensus 365 ~~~~~ 369 (370)
+.|.|
T Consensus 99 ~~g~i 103 (113)
T d1uila_ 99 HLGVI 103 (113)
T ss_dssp HHTSS
T ss_pred HcCCc
Confidence 88864
No 14
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.72 E-value=7.8e-18 Score=122.80 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhc
Q 017515 293 AKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRES 366 (370)
Q Consensus 293 ~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~ 366 (370)
|+++||||||++++++ .|... ++||+|.+.|+|+|.| +|..++.|.|+|| |+|||.||+.||+.|..+
T Consensus 1 Y~s~L~E~~Qk~~~~~-~~~~~-~~G~~h~~~F~~~v~v---~~~~~~~g~G~sK-K~Aeq~AA~~Al~~L~~~ 68 (76)
T d1x48a1 1 YIGLVNSFAQKKKLSV-NYEQC-EPNSELPQRFICKCKI---GQTMYGTGSGVTK-QEAKQLAAKEAYQKLLKS 68 (76)
T ss_dssp HHHHHHHHHHHTTCCE-EEEEC-CCSSSSSCCEEEEEEE---SSCEEEEEEESSH-HHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHhCCCC-ccccC-CcCCCCCCcEEEEEEE---CCEEeCCcCccHH-HHHHHHHHHHHHHHHHcc
Confidence 7999999999999765 67776 6799999999999999 7899999999999 999999999999999864
No 15
>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.72 E-value=2.4e-18 Score=131.97 Aligned_cols=73 Identities=30% Similarity=0.478 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCC-eEEEeecCCCchhHHHHHHHHHHHHHHhhcCC
Q 017515 290 IEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDG-VLFITGDEKSRVKDAENSAASMMLRALRESTY 368 (370)
Q Consensus 290 ~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~-~~~~~g~g~skkk~A~~~AA~~~l~~l~~~~~ 368 (370)
..|+|+.||||||++++. |.|++. +.|++|.+.|+|+|.| +| .+++.|.|+|| |+|||.||+.||+.|.+.+.
T Consensus 5 ~~~~Ks~LqE~~qk~k~~-P~Y~~~-~~G~~h~~~F~~~v~v---~g~~~~~~g~g~sK-K~AEq~AA~~al~~L~~~~~ 78 (99)
T d1whqa_ 5 SSGIKNFLYAWCGKRKMT-PAYEIR-AVGNKNRQKFMCEVRV---EGFNYAGMGNSTNK-KDAQSNAARDFVNYLVRINE 78 (99)
T ss_dssp CCSSHHHHHHHHHHTTCC-CEEEEE-EEECSSSEEEEEEEEC---TTCSCCEEEEESSH-HHHHHHHHHHHHHHHHHHTS
T ss_pred CccHHHHHHHHHHhCCCC-CeEEEe-cccCCCCceEEEEEEe---ccccceeccCCccH-HHHHHHHHHHHHHHHHHcCC
Confidence 458999999999999985 999976 5799999999999999 45 56799999999 99999999999999987664
No 16
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.69 E-value=3.3e-17 Score=122.39 Aligned_cols=70 Identities=31% Similarity=0.377 Sum_probs=63.1
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHh
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALR 364 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~ 364 (370)
..+|||+.||||||+.++..|.|.+....|+ .+.|.|+|.| +|..+++|.|+|| |.|||.||+.||+.|.
T Consensus 7 ~~K~p~s~LqE~~Qk~~~~~p~Y~~~~~~g~--~~~F~~~v~i---~g~~~~~g~G~sK-K~Aeq~AA~~AL~~L~ 76 (85)
T d1x47a1 7 NGKSEVCILHEYMQRVLKVRPVYNFFECENP--SEPFGASVTI---DGVTYGSGTASSK-KLAKNKAARATLEILI 76 (85)
T ss_dssp TCCCHHHHHHHHHHHHTCSCCEEEEEECSSS--SCCEEEEEEE---TTEEEEEEEESSH-HHHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHhCCCCCCeEEEecCCC--CCCEEEEEEE---CCEEEecCCcchH-HHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999866554 4569999999 7999999999999 9999999999999884
No 17
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.67 E-value=1.3e-17 Score=125.67 Aligned_cols=73 Identities=12% Similarity=0.202 Sum_probs=65.7
Q ss_pred hhhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhc
Q 017515 288 FEIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRES 366 (370)
Q Consensus 288 ~~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~ 366 (370)
....|||++||||||++++. |.|++. +.|++|.+.|+|+|.| +|..++.|.|+|| |+||+.||+.||..|...
T Consensus 11 ~~~~n~~s~L~E~~Qk~~~~-~~y~~~-~~g~~h~~~F~~~v~i---~g~~~~~g~G~sK-K~Akq~AA~~Al~~L~~~ 83 (89)
T d1qu6a2 11 LSMGNYIGLINRIAQKKRLT-VNYEQC-ASGVHGPEGFHYKCKM---GQKEYSIGTGSTK-QEAKQLAAKLAYLQILSE 83 (89)
T ss_dssp CCCCCCHHHHHHHHHHSCCE-EEEEEE-EECSSSSSEEEEEEEE---ETTBCCEEEESSH-HHHHHHHHHHHHHHHHHC
T ss_pred ccccCHHHHHHHHHHhcCCC-cceeee-ccCCCCCCceEEEEEE---CCccccccccchH-HHHHHHHHHHHHHHHHcc
Confidence 35679999999999999975 689876 6799999999999999 5888899999999 999999999999999853
No 18
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.63 E-value=1.3e-16 Score=114.65 Aligned_cols=69 Identities=28% Similarity=0.366 Sum_probs=61.2
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhcC
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALREST 367 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~~ 367 (370)
..+||++.|||+|++ +.|++++++||+|.+.|+|+|.| +|..+ +|.|+|| |+|||+||+.||+.|.+..
T Consensus 2 ~~Knpv~~L~E~~~~-----~~y~~~~~~G~~h~~~F~~~v~v---~~~~~-~g~G~SK-K~Ak~~AA~~aL~~L~~~~ 70 (71)
T d2b7va1 2 SGKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVV---DGQFF-EGSGRNK-KLAKARAAQSALATVFNLH 70 (71)
T ss_dssp CSSCHHHHHHHHCCS-----CEEEEEECCCCTTTCCEEEEEEC---SSCEE-EEEESSH-HHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHccC-----CeEEEeeeeCCCCCCeEEEEEEE---CCEEE-EecCCCH-HHHHHHHHHHHHHHHHccC
Confidence 357999999999864 57999999999999999999999 56655 8999999 9999999999999998754
No 19
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.59 E-value=1.4e-15 Score=121.62 Aligned_cols=69 Identities=30% Similarity=0.377 Sum_probs=62.0
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecC-CCchhHHHHHHHHHHHHHHh
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDE-KSRVKDAENSAASMMLRALR 364 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g-~skkk~A~~~AA~~~l~~l~ 364 (370)
...|||+.||||||++++..|.|+++.+ .|++.|+|+|.| ++..+..+.| +|| |+|||.||+.||+.|+
T Consensus 24 ~~~~pKs~LqE~~Qk~~~~~P~Y~~~~~---~~~~~F~~~V~v---~g~~~~s~~g~~SK-K~AEq~AA~~AL~~Lg 93 (128)
T d1whna_ 24 PQITPKMCLLEWCRREKLPQPVYETVQR---TIDRMFCSVVTV---AEQKYQSTLWDKSK-KLAEQTAAIVCLRSQG 93 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEEC---SSSCCEEEEEEE---TTEEEEESSCBSSH-HHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCCCeEEEeec---ccCCCCEEEEEE---CCeEeeccCCcccH-HHHHHHHHHHHHHHhC
Confidence 4579999999999999999999998754 477899999999 7898888876 788 9999999999999996
No 20
>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.57 E-value=4.7e-15 Score=106.11 Aligned_cols=62 Identities=31% Similarity=0.295 Sum_probs=56.9
Q ss_pred chHHHHHHHHHhcCC-ceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHh
Q 017515 206 QPVTLLFKLCQKNGK-QVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267 (370)
Q Consensus 206 ~p~~~L~e~~~k~~~-~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L 267 (370)
|||+.||||||++++ .|.|.+.. |.+.|++.|+++|..++.|.|+|||+||++||+.||+.|
T Consensus 1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~~g~g~sKK~Aeq~AA~~aL~~L 68 (69)
T d1o0wa2 1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL 68 (69)
T ss_dssp CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCCCEEEEEEeeCCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 789999999999987 67898765 357999999999999999999999999999999999987
No 21
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.56 E-value=7.1e-15 Score=106.30 Aligned_cols=65 Identities=20% Similarity=0.171 Sum_probs=59.1
Q ss_pred CchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 205 PQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 205 ~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
+||++.||||||+++..|.|++.+ |.+.|+++|.+++. ++.|.|.|||+||++||+.||+.|...
T Consensus 2 K~Pis~L~E~~qk~~~~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~g~g~sKK~Aeq~AA~~al~~L~~~ 71 (73)
T d2dixa1 2 KTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDI-TCTGEGTSKKLAKHRAAEAAINILKAN 71 (73)
T ss_dssp CCHHHHHHHHHHHTTCCCEEEEEEEECSSSSCEEEEEEEETTE-EEEECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHhCCCCCEEEEeeeeCCCCCcEEEEEEEEEEE-EEEeccccHHHHHHHHHHHHHHHHHhc
Confidence 699999999999999999998865 45799999999886 789999999999999999999999764
No 22
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.56 E-value=9.1e-15 Score=106.26 Aligned_cols=67 Identities=25% Similarity=0.271 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhcCCceeEEEee----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCCC
Q 017515 207 PVTLLFKLCQKNGKQVDIKHWR----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMPV 273 (370)
Q Consensus 207 p~~~L~e~~~k~~~~~~y~~~~----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~~ 273 (370)
+++.||||||++++++.|.... |.+.|+++|.|+|..++.|.|.|||+||++||+.||..|....+.
T Consensus 1 Y~s~L~E~~Qk~~~~~~~~~~~~G~~h~~~F~~~v~v~~~~~~~g~G~sKK~Aeq~AA~~Al~~L~~~~~~ 71 (76)
T d1x48a1 1 YIGLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPK 71 (76)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCCC
T ss_pred ChHHHHHHHHHhCCCCccccCCcCCCCCCcEEEEEEECCEEeCCcCccHHHHHHHHHHHHHHHHHHccCCC
Confidence 5899999999999999988776 346899999999999999999999999999999999999887543
No 23
>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.54 E-value=2.9e-15 Score=110.50 Aligned_cols=71 Identities=25% Similarity=0.215 Sum_probs=60.6
Q ss_pred hhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 290 IEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 290 ~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
..|+|+.|+||||+.+.. |.|+++.. |++|.+.|.++|.+. ++..++.|.|+|| |.|||.||+.||+.++.
T Consensus 5 d~~~K~~L~e~~~~~g~~-P~Y~~~~~-~~~~~~~f~v~~~v~--~~~~~~~g~g~SK-K~AEq~AA~~aL~~~~~ 75 (81)
T d1t4oa_ 5 DMNAKRQLYSLIGYASLR-LHYVTVKK-PTAVDPNSIVECRVG--DGTVLGTGVGRNI-KIAGIRAAENALRDKKM 75 (81)
T ss_dssp CTTHHHHHHHHHCCGGGC-CEEEEEEC-CCSSCCCEEEEEECT--TCCEEEEEEESSH-HHHHHHHHHHHHHCHHH
T ss_pred ccCHHHHHHHHHhcCCCC-cEEEEecc-CCCCCCCEEEEEEEe--cCceEEecccchh-hHHHHHHHHHHHHhccH
Confidence 359999999999999975 99999966 445556788888874 5789999999999 99999999999988763
No 24
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.54 E-value=1.1e-14 Score=109.35 Aligned_cols=68 Identities=15% Similarity=0.060 Sum_probs=62.1
Q ss_pred CCchHHHHHHHHHhcCCceeEEEeec----CCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcC
Q 017515 204 QPQPVTLLFKLCQKNGKQVDIKHWRK----NRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSM 271 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~~~y~~~~~----~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 271 (370)
..||++.||||||++++.+.|+.... .+.|+++|.|+|..++.|.|.|||+||+.||+.||..|....
T Consensus 13 ~~n~~s~L~E~~Qk~~~~~~y~~~~~g~~h~~~F~~~v~i~g~~~~~g~G~sKK~Akq~AA~~Al~~L~~~~ 84 (89)
T d1qu6a2 13 MGNYIGLINRIAQKKRLTVNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEE 84 (89)
T ss_dssp CCCCHHHHHHHHHHSCCEEEEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHhcCCCcceeeeccCCCCCCceEEEEEECCccccccccchHHHHHHHHHHHHHHHHHccC
Confidence 45999999999999999889987653 468999999999999999999999999999999999998764
No 25
>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.52 E-value=2.7e-14 Score=106.27 Aligned_cols=65 Identities=29% Similarity=0.273 Sum_probs=58.6
Q ss_pred CCchHHHHHHHHHhcCC-ceeEEEeec---CCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhh
Q 017515 204 QPQPVTLLFKLCQKNGK-QVDIKHWRK---NRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~-~~~y~~~~~---~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~ 268 (370)
.+||++.||||||+.++ .|.|.+... ...|+++|.++|..+++|.|.|||.||++||+.||+.|.
T Consensus 8 ~K~p~s~LqE~~Qk~~~~~p~Y~~~~~~g~~~~F~~~v~i~g~~~~~g~G~sKK~Aeq~AA~~AL~~L~ 76 (85)
T d1x47a1 8 GKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILI 76 (85)
T ss_dssp CCCHHHHHHHHHHHHTCSCCEEEEEECSSSSCCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCEEEEEEECCEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 57999999999999987 778987652 346999999999999999999999999999999999984
No 26
>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.52 E-value=1.2e-14 Score=108.18 Aligned_cols=68 Identities=22% Similarity=0.182 Sum_probs=61.8
Q ss_pred CchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCC
Q 017515 205 PQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272 (370)
Q Consensus 205 ~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 272 (370)
.+|++.||||||++++.|.|..+. |++.|+|+|+|+|..++.|.|.|||+||+.||+.||..|.....
T Consensus 7 ~~yk~~L~E~~Qk~~~~~~y~~~~~~Gp~h~~~F~~~v~v~g~~~~~g~g~sKK~Aeq~AA~~aL~~L~~~~~ 79 (85)
T d1x49a1 7 GFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENK 79 (85)
T ss_dssp THHHHHHHHHHHHHTCCEEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred hhHHHHHHHHHHhcCCCCeEEEEEecCCCCCceEEEEEecCceEeeccccccHHHHHHHHHHHHHHHHHHcCc
Confidence 489999999999999999998875 45799999999999999999999999999999999999977643
No 27
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.52 E-value=1.1e-14 Score=105.03 Aligned_cols=66 Identities=29% Similarity=0.486 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 290 IEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 290 ~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
.+||.+.|+|+ .+.|.|++++++|++|.+.|+|+|.| +|..+ +|.|+|| |+|||+||+.||+.|.+
T Consensus 6 pK~~l~~L~e~-----~~~~~y~~~~~~G~~h~~~F~~~v~v---~~~~~-~g~G~SK-K~Aeq~AA~~aL~~l~~ 71 (73)
T d2b7ta1 6 PKNALMQLNEI-----KPGLQYMLLSQTGPVHAPLFVMSVEV---NGQVF-EGSGPTK-KKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SHHHHHHHHHH-----CSCCEEEEEEEECSSSSCEEEEEEES---SSSEE-EEEESSH-HHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHhc-----CCCCEEEEEEeeCCCCCceEEEEEEE---CCEEE-EcCCCcH-HHHHHHHHHHHHHHHhh
Confidence 46777777776 25689999999999999999999999 57665 8999999 99999999999999865
No 28
>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.51 E-value=1.2e-14 Score=109.31 Aligned_cols=68 Identities=24% Similarity=0.193 Sum_probs=61.7
Q ss_pred CchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCC
Q 017515 205 PQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272 (370)
Q Consensus 205 ~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 272 (370)
.+|++.||||||++++.|.|..+. |.+.|+|+|.|+|..+++|.|.|||+||++||+.||+.|.....
T Consensus 13 ~~y~s~LqE~~Qk~~~~p~y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Aeq~AA~~aL~~L~~~~~ 85 (90)
T d1qu6a1 13 GFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKK 85 (90)
T ss_dssp CSHHHHHHHHHHHHTCCCEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEEeeCCCCCceEEEEEEECceeeeccCCCcHHHHHHHHHHHHHHHHHhhCC
Confidence 388999999999999999998875 34699999999999999999999999999999999999987643
No 29
>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=99.50 E-value=3.6e-14 Score=101.02 Aligned_cols=62 Identities=21% Similarity=0.196 Sum_probs=55.5
Q ss_pred chHHHHHHHHHhcCC-ceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhh
Q 017515 206 QPVTLLFKLCQKNGK-QVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268 (370)
Q Consensus 206 ~p~~~L~e~~~k~~~-~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~ 268 (370)
||++.||||||++++ .|.|+++. |.+.|+++|.++|. .+.|.|.|||.|+++||+.||+.|+
T Consensus 1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~-~~~g~g~sKK~Aeq~AA~~aL~~Lk 68 (68)
T d2nuga2 1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLE 68 (68)
T ss_dssp CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHcCCCCCEEEEEEeeCCCCCcEEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHhC
Confidence 789999999999987 67898765 45799999999995 5899999999999999999999873
No 30
>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.49 E-value=3.5e-14 Score=105.12 Aligned_cols=67 Identities=27% Similarity=0.426 Sum_probs=59.4
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEecccCCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 289 EIEAAKQKLHELCGKKKWPKPSYKIEKDEGPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 289 ~~~~~ks~L~e~~~k~~~~~P~y~~~~~~g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
...||++.|+|+. +.|.|.+++++||+|.+.|+|+|.| +|.. ..|.|+|| |+|||.||..||+.|+-
T Consensus 10 ~~~n~~~~L~e~~-----~~~~Y~~~~~~Gp~h~~~F~~~v~v---~g~~-~~g~G~SK-K~Aeq~AA~~aL~~L~~ 76 (84)
T d2dmya1 10 DLMNALMRLNQIR-----PGLQYKLLSQSGPVHAPVFTMSVDV---DGTT-YEASGPSK-KTAKLHVAVKVLQAMGY 76 (84)
T ss_dssp SCTHHHHHHHHHS-----CSCCCEEEEEESCSSSCEEEEEEEE---TTEE-EEEEESSH-HHHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHhC-----CCCeEEEEEeeCCCCCCeEEEEEEE---CCEE-EEcCCCCH-HHHHHHHHHHHHHHhCC
Confidence 3569999999983 6689999999999999999999999 5765 47999999 99999999999999974
No 31
>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}
Probab=99.48 E-value=7.1e-14 Score=99.70 Aligned_cols=61 Identities=25% Similarity=0.270 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhcCCc-eeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhh
Q 017515 207 PVTLLFKLCQKNGKQ-VDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLA 268 (370)
Q Consensus 207 p~~~L~e~~~k~~~~-~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~ 268 (370)
|++.|||+||++++. |.|+++. |.+.|++.|.++|.. ++|.|.|||+||++||+.||+.|.
T Consensus 2 Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~-~~g~g~sKK~Aeq~AA~~aL~~L~ 68 (69)
T d1di2a_ 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFV-ETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCCCeEEEEEeeCCCCCcceEEEEEEeeEE-EecCcCcHHHHHHHHHHHHHHHhc
Confidence 899999999999995 6898875 457999999999965 599999999999999999999985
No 32
>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.48 E-value=9.4e-14 Score=101.08 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=55.7
Q ss_pred CCchHHHHHHHHHhcCCc-eeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHh
Q 017515 204 QPQPVTLLFKLCQKNGKQ-VDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~-~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L 267 (370)
..||++.||||||+.++. |.|.++. +.+.|++.|.+++. .++|.|.|||+||++||+.||+.|
T Consensus 8 ~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~-~~~g~G~SKK~Aeq~AA~~aL~~L 76 (76)
T d2cpna1 8 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRV 76 (76)
T ss_dssp CCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCCEEEEeeeeccCCCccEEEEEEecce-eeccccccHHHHHHHHHHHHHHhC
Confidence 459999999999999985 6898765 34689999999875 599999999999999999999876
No 33
>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.47 E-value=6.5e-14 Score=106.87 Aligned_cols=68 Identities=22% Similarity=0.230 Sum_probs=60.3
Q ss_pred CchHHHHHHHHHhcCCceeEEEee----cCCeEEEEEEECCee-EEEEeccCHHHHHHHHHHHHHHHhhhcCC
Q 017515 205 PQPVTLLFKLCQKNGKQVDIKHWR----KNRKNIASVYVDGSF-VASASSEQKEIAKLNAAREALEKLAQSMP 272 (370)
Q Consensus 205 ~~p~~~L~e~~~k~~~~~~y~~~~----~~~~f~~~v~v~g~~-~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 272 (370)
.|+|+.||||||++++.|.|.+.. |.+.|+++|.|+|.. ++.|.|.|||+||++||+.||+.|.+...
T Consensus 6 ~~~Ks~LqE~~qk~k~~P~Y~~~~~G~~h~~~F~~~v~v~g~~~~~~g~g~sKK~AEq~AA~~al~~L~~~~~ 78 (99)
T d1whqa_ 6 SGIKNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINE 78 (99)
T ss_dssp CSSHHHHHHHHHHTTCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHHhCCCCCeEEEecccCCCCceEEEEEEeccccceeccCCccHHHHHHHHHHHHHHHHHHcCC
Confidence 489999999999999999998765 446899999999854 69999999999999999999999977643
No 34
>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.46 E-value=2e-14 Score=104.59 Aligned_cols=65 Identities=22% Similarity=0.316 Sum_probs=58.5
Q ss_pred CCchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515 204 QPQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 269 (370)
.+||++.||||||+++++|.|.+++ |.+.|+++|.+++. .+.|.|.|||+||++||..||+.|..
T Consensus 6 ~k~Pvs~L~E~~q~~~~~~~y~~~~~~G~~h~~~F~~~v~v~~~-~~~g~G~SKK~Aeq~AA~~al~~L~~ 75 (76)
T d1ekza_ 6 KKSPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSI-VTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CSCHHHHHHHHHHHTTCCCEEEESSSCCSSSCSCSSEEEEETTE-EEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEEEeeCCCCCeEEEEEEEEeee-EeeeccCcHHHHHHHHHHHHHHHHHc
Confidence 4699999999999999999999876 34689999999774 68999999999999999999999864
No 35
>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.44 E-value=2.4e-13 Score=101.75 Aligned_cols=64 Identities=27% Similarity=0.318 Sum_probs=57.2
Q ss_pred CchHHHHHHHHHhcCC-ceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515 205 PQPVTLLFKLCQKNGK-QVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 205 ~~p~~~L~e~~~k~~~-~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 269 (370)
.||++.||||||++++ .|.|+++. |.+.|+++|+|+|.. .+|.|.|||+||+.||+.||+.|..
T Consensus 6 ~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g~g~SKK~Ae~~AA~~aL~~l~~ 75 (89)
T d1uhza_ 6 SGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEV-ATGTGPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHTS
T ss_pred CCcHHHHHHHHHhcCCCCCEEEeccccccCCceeEEEEEEEeeee-ccccchHHHHHHHHHHHHHHHHhCc
Confidence 5999999999999999 56898765 457899999999986 5999999999999999999999954
No 36
>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.39 E-value=6.1e-13 Score=103.72 Aligned_cols=68 Identities=21% Similarity=0.145 Sum_probs=60.1
Q ss_pred CchHHHHHHHHHhcCCceeEEEee----cCCeEEEEEEE-----CCeeEEEEeccCHHHHHHHHHHHHHHHhhhcCC
Q 017515 205 PQPVTLLFKLCQKNGKQVDIKHWR----KNRKNIASVYV-----DGSFVASASSEQKEIAKLNAAREALEKLAQSMP 272 (370)
Q Consensus 205 ~~p~~~L~e~~~k~~~~~~y~~~~----~~~~f~~~v~v-----~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 272 (370)
+|||+.||||||+++.+|.|++.. |.+.|+++|.| ++..+++|.|.|||+||++||+.||+.|.....
T Consensus 26 ~n~Ks~LqE~~Qk~k~~p~Y~i~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G~G~sKK~AEq~AA~~~l~~L~~~g~ 102 (113)
T d1uila_ 26 ENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGV 102 (113)
T ss_dssp HHHHHHHHHHHHHSCCCCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHhCCCCCceEEeeeccCCCCeEEEEEEEeeeccCCeEEeecccchHHHHHHHHHHHHHHHHHHcCC
Confidence 489999999999999889998755 44789999998 567899999999999999999999999987653
No 37
>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.34 E-value=1.3e-12 Score=104.09 Aligned_cols=68 Identities=21% Similarity=0.152 Sum_probs=60.4
Q ss_pred ccCCchHHHHHHHHHhcCC-ceeEEEee--cCCeEEEEEEECCeeEEEEec-cCHHHHHHHHHHHHHHHhhh
Q 017515 202 QQQPQPVTLLFKLCQKNGK-QVDIKHWR--KNRKNIASVYVDGSFVASASS-EQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 202 ~~~~~p~~~L~e~~~k~~~-~~~y~~~~--~~~~f~~~v~v~g~~~~~g~g-~skk~Ak~~AA~~AL~~L~~ 269 (370)
....+||+.||||||++++ .|.|++.. +++.|+++|.|+|..++.+.| .|||+||++||+.||+.|..
T Consensus 23 p~~~~pKs~LqE~~Qk~~~~~P~Y~~~~~~~~~~F~~~V~v~g~~~~s~~g~~SKK~AEq~AA~~AL~~Lg~ 94 (128)
T d1whna_ 23 PPQITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGL 94 (128)
T ss_dssp CTTCCHHHHHHHHHHHTTCCCCCCCEEECSSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHhcCCCCCeEEEeecccCCCCEEEEEECCeEeeccCCcccHHHHHHHHHHHHHHHhCC
Confidence 3456999999999999998 67898876 458999999999999999886 79999999999999999953
No 38
>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.30 E-value=2.5e-12 Score=91.85 Aligned_cols=62 Identities=29% Similarity=0.390 Sum_probs=53.7
Q ss_pred CCchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 204 QPQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
.+||++.|+|+|++ +.|+++. |.+.|+++|.|+|..+ +|.|.|||+||++||+.||+.|.+.
T Consensus 3 ~Knpv~~L~E~~~~----~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Ak~~AA~~aL~~L~~~ 69 (71)
T d2b7va1 3 GKNPVMILNELRPG----LKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp SSCHHHHHHHHCCS----CEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHccC----CeEEEeeeeCCCCCCeEEEEEEECCEEE-EecCCCHHHHHHHHHHHHHHHHHcc
Confidence 46999999999864 5688765 4578999999999987 8999999999999999999998653
No 39
>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.24 E-value=6.1e-12 Score=92.32 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=56.1
Q ss_pred CCchHHHHHHHHHhcCCceeEEEeecC----CeEEEEEEE-CCeeEEEEeccCHHHHHHHHHHHHHHHhh
Q 017515 204 QPQPVTLLFKLCQKNGKQVDIKHWRKN----RKNIASVYV-DGSFVASASSEQKEIAKLNAAREALEKLA 268 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~~~y~~~~~~----~~f~~~v~v-~g~~~~~g~g~skk~Ak~~AA~~AL~~L~ 268 (370)
..|+|+.|++|||+.+..|.|++++.+ +.|.+.|.+ ++..++.|.|.|||.|+++||+.||+.+.
T Consensus 5 d~~~K~~L~e~~~~~g~~P~Y~~~~~~~~~~~~f~v~~~v~~~~~~~~g~g~SKK~AEq~AA~~aL~~~~ 74 (81)
T d1t4oa_ 5 DMNAKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK 74 (81)
T ss_dssp CTTHHHHHHHHHCCGGGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred ccCHHHHHHHHHhcCCCCcEEEEeccCCCCCCCEEEEEEEecCceEEecccchhhHHHHHHHHHHHHhcc
Confidence 358999999999999999999998733 467777766 67889999999999999999999998764
No 40
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.09 E-value=2.3e-10 Score=81.93 Aligned_cols=59 Identities=25% Similarity=0.266 Sum_probs=47.5
Q ss_pred chHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515 206 QPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 206 ~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 269 (370)
||++.|+|+ ...+.|+++. |++.|+++|.|+|..+ +|.|.|||+||++||+.||+.|.+
T Consensus 8 ~~l~~L~e~----~~~~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Aeq~AA~~aL~~l~~ 71 (73)
T d2b7ta1 8 NALMQLNEI----KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp HHHHHHHHH----CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHhc----CCCCEEEEEEeeCCCCCceEEEEEEECCEEE-EcCCCcHHHHHHHHHHHHHHHHhh
Confidence 444555553 2346788765 4578999999999987 999999999999999999999865
No 41
>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.00 E-value=7e-10 Score=81.47 Aligned_cols=62 Identities=24% Similarity=0.203 Sum_probs=51.5
Q ss_pred CCchHHHHHHHHHhcCCceeEEEee-----cCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 204 QPQPVTLLFKLCQKNGKQVDIKHWR-----KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 204 ~~~p~~~L~e~~~k~~~~~~y~~~~-----~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
..||+..|+|+. ..|.|.++. |.+.|+++|.|+|..+ .|.|.|||+||++||+.||+.|...
T Consensus 11 ~~n~~~~L~e~~----~~~~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~g~G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T d2dmya1 11 LMNALMRLNQIR----PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYP 77 (84)
T ss_dssp CTHHHHHHHHHS----CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCC
T ss_pred ccCHHHHHHHhC----CCCeEEEEEeeCCCCCCeEEEEEEECCEEE-EcCCCCHHHHHHHHHHHHHHHhCCC
Confidence 358888888872 236788764 4579999999999876 8999999999999999999999644
No 42
>d1ztda1 a.149.1.2 (A:2-125) Hypothetical protein PF0609 {Pyrococcus furiosus [TaxId: 2261]}
Probab=80.60 E-value=4.4 Score=28.69 Aligned_cols=84 Identities=19% Similarity=0.160 Sum_probs=58.7
Q ss_pred hhhhhhHHHHHHHHHHHHHH--HCCCCCcchhhHHHHHhcChHHHHHHHHHcChhHHHhhccchhhHHHHHHHHHhhccc
Q 017515 70 RLEFIGDAALGLALSNYVFL--AYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED 147 (370)
Q Consensus 70 rLe~LGdavL~~~v~~~l~~--~~p~~~~~~l~~lr~~lvsn~~La~~a~~~gL~~~l~~~~~~~~~~~~~~~~~~~~~~ 147 (370)
-|+-+||++++++.+--|.+ -.|.-. -|-|..|+......||.+.+...
T Consensus 5 gLak~GDSLiNfl~SlALte~lG~PTg~----------rVPnasLAiAle~a~Ls~~l~r~------------------- 55 (124)
T d1ztda1 5 GLAKFGDSLINFLYSLALTEFLGKPTGD----------RVPNASLAIALELTGLSKNLRRV------------------- 55 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCC----------CCCHHHHHHHHHHHTGGGGCCGG-------------------
T ss_pred hHHHHhHHHHHHHHHHHHHHHhCCCCCC----------CCCChHHHHHHHHHhHhhcCCCc-------------------
Confidence 47889999999999888754 334321 46778888776667777765221
Q ss_pred cccccCCCcCCchHHHHHHHHHHHHHhhcCCcChHHHHHHHHHhh
Q 017515 148 NTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLL 192 (370)
Q Consensus 148 ~~~~~~~~~~~~k~lad~feAliGAIyld~g~~~~~~~~v~~~ll 192 (370)
....-+|..||+|+=.|+.+-+......+++..-+
T Consensus 56 ----------dkh~kGd~aEA~iAyAWLeg~it~eEavEilk~nl 90 (124)
T d1ztda1 56 ----------DKHAKGDYAEALIAKAWLMGLISEREAVEIIKKNL 90 (124)
T ss_dssp ----------GTTCHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTC
T ss_pred ----------ccCCccHHHHHHHHHHHHhccchHHHHHHHHHHhC
Confidence 11234899999999999998887766555555433
No 43
>d2uube2 d.50.1.2 (E:5-73) Ribosomal S5 protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=42.16 E-value=25 Score=22.73 Aligned_cols=39 Identities=15% Similarity=0.021 Sum_probs=27.8
Q ss_pred eEEEEEEECCe----eEEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 232 KNIASVYVDGS----FVASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 232 ~f~~~v~v~g~----~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
.|.+-|.+++. -+|.|.+..-..|-++|...|-+.|...
T Consensus 23 ~f~alvvvGn~~G~vG~G~gKa~ev~~Ai~KA~~~Ak~nm~~V 65 (69)
T d2uube2 23 RFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEV 65 (69)
T ss_dssp EEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHHHSEEEC
T ss_pred EEEEEEEEECCCCcEeeccccchHHHHHHHHHHHHHHhCcEEE
Confidence 46666666432 2556667778899999999998887554
No 44
>d2dsya1 d.304.1.2 (A:3-82) Hypothetical protein TTHA0281 {Thermus thermophilus [TaxId: 274]}
Probab=38.01 E-value=16 Score=24.38 Aligned_cols=52 Identities=6% Similarity=-0.098 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCceeEEEeecCCeEEEEEEECCeeEEEEeccCHHHHHHHHHHHH
Q 017515 210 LLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREA 263 (370)
Q Consensus 210 ~L~e~~~k~~~~~~y~~~~~~~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~A 263 (370)
.|.+|+...-....|..+.+++.|. +++-+..-..+.|.|..+|..+|....
T Consensus 4 ~l~~y~~~~M~~~~Y~iieedg~y~--~~~PDlpgc~t~GdT~eEA~~~a~eAl 55 (80)
T d2dsya1 4 TLTRYLEEAMARARYELIADEEPYY--GEIPDLPGVWATGKSLKECEANLQAAL 55 (80)
T ss_dssp HHHHHHHHHHHTCEEEECSSSSCEE--EECTTSTTCEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhceeEEEecCCEEE--EEeCCCCcEEecCCCHHHHHHHHHHHH
Confidence 4555555544456788777777764 455555444678899999988776544
No 45
>d2qale2 d.50.1.2 (E:9-77) Ribosomal S5 protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=34.48 E-value=20 Score=23.25 Aligned_cols=39 Identities=13% Similarity=-0.004 Sum_probs=29.0
Q ss_pred eEEEEEEECC---e-eEEEEeccCHHHHHHHHHHHHHHHhhhc
Q 017515 232 KNIASVYVDG---S-FVASASSEQKEIAKLNAAREALEKLAQS 270 (370)
Q Consensus 232 ~f~~~v~v~g---~-~~~~g~g~skk~Ak~~AA~~AL~~L~~~ 270 (370)
.|.+-|.+++ . -+|.|.+..-..|-++|...|.+.|...
T Consensus 23 ~f~alVvvGn~~G~vG~G~gKa~ev~~Ai~KA~~~Ak~nl~~V 65 (69)
T d2qale2 23 SFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINV 65 (69)
T ss_dssp CCEEEEEEECSSSBCCEEEEECSSHHHHHHHHHHHHHSSCCBC
T ss_pred EEEEEEEeeCCCCcEeEeeeccccHHHHHHHHHHHHHhCcEEE
Confidence 5777777743 2 3677777788899999999998877543
No 46
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=33.92 E-value=7.2 Score=26.42 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=30.2
Q ss_pred HHHHHHHHHHCCC---CCcchhhHHHHHhcChHHHHHHHHHcChhHHH
Q 017515 81 LALSNYVFLAYPQ---LDPGQLSLLRAANISTEKLARVAVKHGFYKFV 125 (370)
Q Consensus 81 ~~v~~~l~~~~p~---~~~~~l~~lr~~lvsn~~La~~a~~~gL~~~l 125 (370)
.-|++|+..+... .+-.+|. ...-||..++.++++++|+..|-
T Consensus 21 ~~ia~yil~~~~~~~~~si~~lA--~~~~vS~sTi~Rf~kklG~~gf~ 66 (83)
T d2o3fa1 21 RKLADYILAHPHKAIESTVNEIS--ALANSSDAAVIRLCKSLGLKGFQ 66 (83)
T ss_dssp HHHHHHHHHCHHHHHTCCHHHHH--HHTTCCHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHcCHHHHHHccHHHHH--HHHCCCHHHHHHHHHHhCCCCHH
Confidence 3466777665433 3333333 45689999999999999998874
No 47
>d2ywqa1 d.204.1.1 (A:1-95) Ribosome binding protein Y (YfiA homologue) {Thermus thermophilus [TaxId: 274]}
Probab=30.56 E-value=70 Score=21.26 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=31.3
Q ss_pred CCCCCcceEEEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhh
Q 017515 318 GPSHDKKFMSAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRE 365 (370)
Q Consensus 318 g~~~~~~f~~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~ 365 (370)
++.....|.|++++..+++.+.+.+.+.+- -.|=..|+..+=++|++
T Consensus 47 ~~~~~~~~~~ei~v~~~g~~i~a~~~~~d~-y~AiD~a~~klerqLrK 93 (95)
T d2ywqa1 47 SPHVEKKARAEIQVDLPGGLVRVEEEDADL-YAAIDRAVDRLETQVKR 93 (95)
T ss_dssp ------CEEEEEEEEETTEEEEEEEEESSH-HHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEEEEeCCcEEEEEEecCCH-HHHHHHHHHHHHHHHhh
Confidence 333456799999998877788888888887 66666666666666653
No 48
>d1z1ba1 d.10.1.4 (A:11-59) lambda integrase N-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=28.39 E-value=38 Score=20.22 Aligned_cols=35 Identities=14% Similarity=0.027 Sum_probs=23.9
Q ss_pred CeEEEEEEECCeeEEEEeccCHHHHHHHHHHHHHHHh
Q 017515 231 RKNIASVYVDGSFVASASSEQKEIAKLNAAREALEKL 267 (370)
Q Consensus 231 ~~f~~~v~v~g~~~~~g~g~skk~Ak~~AA~~AL~~L 267 (370)
+.|..+=-+.|+.++-|. .+++|..+|...=+..+
T Consensus 12 ~y~~yr~P~tGk~~~LG~--d~~~A~~~AieAN~~I~ 46 (49)
T d1z1ba1 12 GYYCYRDPRTGKEFGLGR--DRRIAITEAIQANIELF 46 (49)
T ss_dssp TEEEEECTTTCCEEEEES--CHHHHHHHHHHHHHHHH
T ss_pred CeEEeecCCCCceecCCc--cHHHHHHHHHHHHHHHH
Confidence 344444445677776665 89999999987766554
No 49
>d1pkpa2 d.50.1.2 (A:4-77) Ribosomal S5 protein, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=27.91 E-value=35 Score=22.33 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=26.5
Q ss_pred eEEEEEEECCe--e--EEEEeccCHHHHHHHHHHHHHHHhhh
Q 017515 232 KNIASVYVDGS--F--VASASSEQKEIAKLNAAREALEKLAQ 269 (370)
Q Consensus 232 ~f~~~v~v~g~--~--~~~g~g~skk~Ak~~AA~~AL~~L~~ 269 (370)
.|.+-|.+++. . +|.|.+..-..|-++|-..|.+.|..
T Consensus 29 ~f~a~VvvGn~~G~vG~G~gKa~ev~~Ai~KA~~~Ak~nl~~ 70 (74)
T d1pkpa2 29 RFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIE 70 (74)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHTTSCEE
T ss_pred EEEEEEEeeCCCCcEEEEEEEchHHHHHHHHHHHHHHhCCEE
Confidence 68887777542 3 45555666778889999888776643
No 50
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=24.89 E-value=14 Score=22.01 Aligned_cols=34 Identities=6% Similarity=-0.049 Sum_probs=29.7
Q ss_pred CCCCCcchhhHHHHHhcChHHHHHHHHHcChhHH
Q 017515 91 YPQLDPGQLSLLRAANISTEKLARVAVKHGFYKF 124 (370)
Q Consensus 91 ~p~~~~~~l~~lr~~lvsn~~La~~a~~~gL~~~ 124 (370)
-|.+++.++..++..+-+....+.+|..+|...-
T Consensus 3 ~~~lt~~q~~~a~~l~~~G~s~~~iA~~~gVSr~ 36 (47)
T d1ijwc_ 3 PRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVS 36 (47)
T ss_dssp CCSSCHHHHHHHHHHHHTTCCHHHHHHHHTCCHH
T ss_pred CCcCCHHHHHHHHHHHHCCCCHHHHHHHHCcCHH
Confidence 3678999999999999999999999999997653
No 51
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.25 E-value=69 Score=21.91 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=26.1
Q ss_pred EEEEEEecCCeEEEeecCCCchhHHHHHHHHHHHHHHhhcCC
Q 017515 327 SAVQIATTDGVLFITGDEKSRVKDAENSAASMMLRALRESTY 368 (370)
Q Consensus 327 ~~v~v~~~~~~~~~~g~g~skkk~A~~~AA~~~l~~l~~~~~ 368 (370)
+++.|- .+|+.+.+|. +|- .+|++ |.+.++..|++.|+
T Consensus 53 ~t~lIF-~SGKivitGa-ks~-~~~~~-a~~~i~~~l~k~g~ 90 (99)
T d1qnaa1 53 TTALIF-ASGKMVCTGA-KSE-DFSKM-AARKYARIVQKLGF 90 (99)
T ss_dssp EEEEEE-TTSEEEEEEE-SSH-HHHHH-HHHHHHHHHHHTTC
T ss_pred EEEEEE-cCCEEEEecc-CCH-HHHHH-HHHHHHHHHHHcCC
Confidence 444443 2799999994 566 66665 55677788888775
No 52
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.73 E-value=47 Score=24.47 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhcCCcChHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHHHhc
Q 017515 161 VLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKN 218 (370)
Q Consensus 161 ~lad~feAliGAIyld~g~~~~~~~~v~~~ll~~~i~~~~~~~~~~p~~~L~e~~~k~ 218 (370)
...|-|+.+|++|...+- ....+..++..|++.+.+++++.. -+...|.++.+..
T Consensus 16 ~~~dPf~~LV~~ILsqqT-~~~~v~~v~~~L~~~~pt~e~la~--a~~~el~~~Ir~~ 70 (144)
T d1ngna_ 16 LFHDPWKLLIATIFLNRT-SGKMAIPVLWEFLEKYPSAEVARA--ADWRDVSELLKPL 70 (144)
T ss_dssp HTTSHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHSCSHHHHHH--SCHHHHHHHTGGG
T ss_pred hcCCHHHHHHHHHHHccC-CHHHHHHHHHHHHHhCCchhhhhc--cCHHHHHHHHHhh
Confidence 347889999999987663 455556788888887766665543 3445555555444
Done!