BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017516
         (370 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
          Length = 460

 Score = 32.7 bits (73), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 91/220 (41%), Gaps = 23/220 (10%)

Query: 1   MTLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMI 60
           M L  + A++     +  IP      +I ++L  +    V+   + I+ +M V  +  M 
Sbjct: 69  MALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDV--EEAMA 126

Query: 61  KPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIF---- 116
                Y+       PA LL  AL+    G   TK       +G L N+ L+ IF++    
Sbjct: 127 TKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFG 186

Query: 117 LFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLL---------PPSSKDLKFGQFLKNG 167
               G  G  +A  I  +++ L+LL+ ++    L           P  K+L   +  + G
Sbjct: 187 APELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELI--RLFRLG 244

Query: 168 FLLMVRVIAVTFCVTL---AASLAARQGSTSMAAFQVCLQ 204
           F +     A+ F VTL    A L A  GST +AA QV L 
Sbjct: 245 FPVAA---ALFFEVTLFAVVALLVAPLGSTVVAAHQVALN 281


>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
           With Maltopentaose
          Length = 516

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 143 KLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVC 202
           KLI E+ +LPPS  +    QFL NG+L M     + +   +  +     G  +  AF   
Sbjct: 224 KLISELAILPPSDGE----QFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTT 279

Query: 203 LQI 205
            Q+
Sbjct: 280 FQV 282


>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
           Cereus Beta-Amylase At Ph 4.6
          Length = 516

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 143 KLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVC 202
           KLI E+ +LPPS  +    QFL NG+L M     + +   +  +     G  +  AF   
Sbjct: 224 KLISELAILPPSDGE----QFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTT 279

Query: 203 LQI 205
            Q+
Sbjct: 280 FQV 282


>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
 pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
 pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
 pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
 pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
 pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
 pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
           Var. Mycoides Cocrystallized With Maltose
 pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Glucose
 pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Glucose
 pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Glucose
 pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Glucose
 pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Maltose
 pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Maltose
 pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Maltose
 pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Maltose
 pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Ggx
 pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Ggx
 pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Ggx
 pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Ggx
 pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Alpha-Epg
 pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Alpha-Epg
 pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Alpha-Epg
 pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Alpha-Epg
 pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Alpha-Ebg
 pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Alpha-Ebg
 pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Alpha-Ebg
 pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
           With Alpha-Ebg
 pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
           At The Optimum Ph (6.5)
          Length = 516

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 143 KLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVC 202
           KLI E+ +LPPS  +    QFL NG+L M     + +   +  +     G  +  AF   
Sbjct: 224 KLISELAILPPSDGE----QFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTT 279

Query: 203 LQI 205
            Q+
Sbjct: 280 FQV 282


>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
           MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
          Length = 516

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 143 KLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVC 202
           KLI E+ +LPPS  +    QFL NG+L M     + +   +  +     G  +  AF   
Sbjct: 224 KLISELAILPPSDGE----QFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTT 279

Query: 203 LQI 205
            Q+
Sbjct: 280 FQV 282


>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
           Cereus Beta-Amylase At Ph 4.6
          Length = 516

 Score = 30.0 bits (66), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 143 KLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVC 202
           KLI E+ +LPPS  +    QFL NG+L M     + +   +  +     G  +  AF   
Sbjct: 224 KLISELAILPPSDGE----QFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTT 279

Query: 203 LQI 205
            Q+
Sbjct: 280 FQV 282


>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
 pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
 pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
           Monobody
 pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
          Length = 459

 Score = 28.1 bits (61), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 11/140 (7%)

Query: 29  GSVLGLIQAFFVIAYAKPILNYMGVNS--DSPMIKPAQQYLTLRSLGAPAVLLSLALQGI 86
           G +LG+     + A   P  N++ ++   +  M     QY+   SL  PA ++  AL   
Sbjct: 100 GLILGIFGMILMWAAITPFRNWLTLSDYVEGTM----AQYMLFTSLAMPAAMVHRALHAY 155

Query: 87  FRGFKDTKTPFYATILGDLANVILDPIFIF----LFNWGVSGAAIAHVISQYLISLILLW 142
                  +     +    + NV L+ IF++    +   G +G  +A  ++ +  S + LW
Sbjct: 156 ASSLNRPRLIMLVSFAAFVLNVPLNYIFVYGKFGMPALGGAGCGVA-TMAVFWFSALALW 214

Query: 143 KLIEEVDLLPPSSKDLKFGQ 162
             I +     P     KFG+
Sbjct: 215 IYIAKEKFFRPFGLTAKFGK 234


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.139    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,551,230
Number of Sequences: 62578
Number of extensions: 285437
Number of successful extensions: 651
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 649
Number of HSP's gapped (non-prelim): 9
length of query: 370
length of database: 14,973,337
effective HSP length: 100
effective length of query: 270
effective length of database: 8,715,537
effective search space: 2353194990
effective search space used: 2353194990
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)