Query 017516
Match_columns 370
No_of_seqs 209 out of 1934
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 09:16:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 2.2E-50 4.7E-55 373.0 43.2 362 2-367 76-447 (455)
2 PRK10189 MATE family multidrug 100.0 1.7E-45 3.7E-50 343.5 45.8 363 3-367 89-466 (478)
3 PRK09575 vmrA multidrug efflux 100.0 4.8E-45 1E-49 339.8 41.9 355 3-359 73-434 (453)
4 PRK00187 multidrug efflux prot 100.0 3.7E-45 8.1E-50 341.1 41.0 362 3-367 70-450 (464)
5 PRK10367 DNA-damage-inducible 100.0 3.2E-44 6.9E-49 331.9 42.5 350 3-359 70-429 (441)
6 PRK01766 multidrug efflux prot 100.0 1.1E-43 2.5E-48 332.0 41.3 360 3-366 72-445 (456)
7 TIGR01695 mviN integral membra 100.0 1.4E-35 3E-40 281.4 43.5 352 6-361 64-428 (502)
8 PF03023 MVIN: MviN-like prote 100.0 6.8E-33 1.5E-37 256.7 43.5 357 4-363 39-405 (451)
9 TIGR02900 spore_V_B stage V sp 100.0 9.6E-33 2.1E-37 261.2 41.6 347 4-360 62-433 (488)
10 PRK15099 O-antigen translocase 100.0 2.4E-32 5.2E-37 252.7 38.4 339 6-359 66-410 (416)
11 TIGR00797 matE putative efflux 100.0 5.2E-32 1.1E-36 244.5 34.4 282 3-286 53-341 (342)
12 COG0728 MviN Uncharacterized m 100.0 1.9E-28 4.1E-33 223.5 42.8 359 4-362 72-438 (518)
13 KOG1347 Uncharacterized membra 100.0 2.2E-28 4.7E-33 224.8 21.5 359 4-367 90-456 (473)
14 PRK10459 colanic acid exporter 100.0 5.7E-25 1.2E-29 208.1 39.6 328 19-359 74-403 (492)
15 COG0534 NorM Na+-driven multid 99.9 1.7E-24 3.8E-29 200.6 27.1 207 156-362 12-222 (455)
16 PRK10189 MATE family multidrug 99.9 3.4E-24 7.3E-29 200.5 27.3 206 154-359 22-235 (478)
17 PRK00187 multidrug efflux prot 99.9 7.1E-24 1.5E-28 198.2 27.5 204 155-359 4-213 (464)
18 PRK10367 DNA-damage-inducible 99.9 9.4E-24 2E-28 195.6 26.9 203 157-359 5-210 (441)
19 PRK09575 vmrA multidrug efflux 99.9 3.1E-23 6.6E-28 193.6 26.6 205 157-361 8-215 (453)
20 PRK01766 multidrug efflux prot 99.9 1.5E-22 3.2E-27 189.7 27.7 204 157-360 8-217 (456)
21 COG2244 RfbX Membrane protein 99.9 4.8E-21 1E-25 180.9 36.0 277 63-345 116-396 (480)
22 TIGR00797 matE putative efflux 99.8 7E-19 1.5E-23 158.9 25.8 192 169-360 1-196 (342)
23 PF01554 MatE: MatE; InterPro 99.8 1.6E-20 3.6E-25 150.6 7.3 161 169-329 1-162 (162)
24 PF01943 Polysacc_synt: Polysa 99.6 1.8E-12 3.8E-17 113.1 25.4 152 75-227 120-272 (273)
25 TIGR01695 mviN integral membra 99.6 1.6E-12 3.5E-17 123.7 25.7 196 163-360 2-206 (502)
26 TIGR02900 spore_V_B stage V sp 99.6 1E-12 2.2E-17 124.7 22.5 191 164-358 2-201 (488)
27 KOG1347 Uncharacterized membra 99.5 4.8E-12 1E-16 117.1 19.2 201 158-359 25-228 (473)
28 PF13440 Polysacc_synt_3: Poly 99.4 2E-10 4.4E-15 98.9 25.7 198 13-226 51-250 (251)
29 PRK15099 O-antigen translocase 99.4 2.2E-11 4.7E-16 113.0 20.4 191 163-359 3-195 (416)
30 PF03023 MVIN: MviN-like prote 99.3 1.7E-09 3.7E-14 100.8 22.7 171 189-360 3-181 (451)
31 COG0728 MviN Uncharacterized m 99.3 6.6E-09 1.4E-13 96.1 25.8 168 2-173 292-461 (518)
32 PF01554 MatE: MatE; InterPro 99.2 1.6E-11 3.4E-16 98.4 5.0 109 3-113 53-162 (162)
33 KOG2864 Nuclear division RFT1 99.1 8E-07 1.7E-11 78.9 28.0 293 67-359 126-447 (530)
34 PRK10459 colanic acid exporter 99.0 4E-07 8.6E-12 86.5 26.9 136 4-147 270-405 (492)
35 PF04506 Rft-1: Rft protein; 99.0 2.4E-07 5.2E-12 87.5 22.5 280 80-359 152-468 (549)
36 COG2244 RfbX Membrane protein 98.8 1.4E-06 2.9E-11 82.7 20.2 123 3-132 274-396 (480)
37 PF14667 Polysacc_synt_C: Poly 98.7 2.9E-06 6.2E-11 66.4 16.5 80 67-148 2-81 (146)
38 PF01943 Polysacc_synt: Polysa 98.5 5.9E-05 1.3E-09 65.5 23.1 185 164-359 2-189 (273)
39 PF14667 Polysacc_synt_C: Poly 98.5 7.8E-07 1.7E-11 69.7 9.2 79 283-361 2-80 (146)
40 PF13440 Polysacc_synt_3: Poly 98.4 0.00024 5.3E-09 60.9 22.8 164 182-359 5-171 (251)
41 PF07260 ANKH: Progressive ank 98.0 0.0083 1.8E-07 51.7 22.0 164 157-330 7-179 (345)
42 PF07260 ANKH: Progressive ank 97.7 0.029 6.2E-07 48.5 21.4 159 49-209 116-289 (345)
43 PF04506 Rft-1: Rft protein; 97.5 0.003 6.5E-08 60.2 14.3 132 16-150 339-473 (549)
44 KOG2864 Nuclear division RFT1 97.4 0.035 7.6E-07 50.3 18.2 135 12-150 315-452 (530)
45 COG4267 Predicted membrane pro 94.5 3.5 7.5E-05 37.0 28.9 274 69-352 136-437 (467)
46 COG4267 Predicted membrane pro 82.4 38 0.00083 30.7 20.0 136 210-359 74-209 (467)
47 PF04505 Dispanin: Interferon- 52.7 73 0.0016 21.8 6.9 37 217-253 37-73 (82)
48 PF01914 MarC: MarC family int 47.4 1.6E+02 0.0035 24.3 10.8 69 210-284 12-80 (203)
49 TIGR01478 STEVOR variant surfa 44.6 32 0.00069 29.7 3.7 33 335-367 259-292 (295)
50 COG2211 MelB Na+/melibiose sym 42.4 3.1E+02 0.0067 26.1 15.5 55 89-143 144-206 (467)
51 PRK10739 putative antibiotic t 39.9 2.1E+02 0.0046 23.5 11.1 69 210-284 12-80 (197)
52 PTZ00370 STEVOR; Provisional 39.5 34 0.00073 29.6 3.1 34 334-367 254-288 (296)
53 PF03904 DUF334: Domain of unk 39.0 1.6E+02 0.0034 24.7 6.7 64 14-78 142-212 (230)
54 PRK10995 inner membrane protei 34.4 2.8E+02 0.006 23.2 10.8 69 210-284 16-84 (221)
55 PF05975 EcsB: Bacterial ABC t 32.8 4E+02 0.0086 24.5 15.6 37 14-50 89-125 (386)
56 TIGR00427 membrane protein, Ma 32.6 2.8E+02 0.0061 22.8 10.4 69 210-284 15-83 (201)
57 PF04306 DUF456: Protein of un 32.0 2.4E+02 0.0051 21.7 11.2 25 159-183 102-126 (140)
58 KOG2468 Dolichol kinase [Lipid 29.7 4.8E+02 0.01 24.6 9.9 71 165-244 377-449 (510)
59 PF13347 MFS_2: MFS/sugar tran 29.0 4.7E+02 0.01 24.2 15.4 21 300-320 281-301 (428)
60 PF05975 EcsB: Bacterial ABC t 27.8 4.8E+02 0.011 24.0 13.9 37 231-267 88-124 (386)
61 PF01102 Glycophorin_A: Glycop 25.7 1.5E+02 0.0032 22.2 4.2 10 124-133 68-77 (122)
62 PRK11111 hypothetical protein; 25.3 4E+02 0.0087 22.2 10.5 68 211-284 19-86 (214)
63 PRK13852 type IV secretion sys 22.8 5.4E+02 0.012 22.8 10.9 35 222-257 48-82 (295)
64 PF11070 DUF2871: Protein of u 22.2 3.5E+02 0.0075 20.6 5.6 30 65-94 72-101 (132)
65 COG1987 FliQ Flagellar biosynt 21.0 3E+02 0.0066 19.2 5.5 51 233-284 3-53 (89)
66 PF01102 Glycophorin_A: Glycop 20.7 1.1E+02 0.0025 22.8 2.8 15 336-350 66-80 (122)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=2.2e-50 Score=373.01 Aligned_cols=362 Identities=29% Similarity=0.480 Sum_probs=340.8
Q ss_pred chhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHH
Q 017516 2 TLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSL 81 (370)
Q Consensus 2 ~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 81 (370)
+.+.+||++|+||+++.++..++++.+.++++++.+++.+.+.++++++++.++| +.+.+.+|+++..++.|+..++.
T Consensus 76 ~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~--v~~~a~~Yl~i~~~~~~~~~~~~ 153 (455)
T COG0534 76 TTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAE--VLELAAEYLRIILLGAPFALLSF 153 (455)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999999999998776 89999999999999999999999
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhh-hc-cchHHHHHHHHHHHHHHHHHHHHHHHhhhc---CC---CC
Q 017516 82 ALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFL-FN-WGVSGAAIAHVISQYLISLILLWKLIEEVD---LL---PP 153 (370)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~-~~-~g~~g~alat~i~~~~~~~~~~~~~~~~~~---~~---~~ 153 (370)
.+++.+|++||+|.+++.+++++++|+++|++|+++ .+ +|+.|+++||++++++..+....++.++++ .. ..
T Consensus 154 ~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (455)
T COG0534 154 VLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLL 233 (455)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhcc
Confidence 999999999999999999999999999999999998 57 999999999999999999999999887653 11 22
Q ss_pred CcchhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCH
Q 017516 154 SSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDY 233 (370)
Q Consensus 154 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~ 233 (370)
++++..+|++++.|+|..+++..........+.+++++|++++|+|+++.++.++..+++.|++++.++++++++|+||+
T Consensus 234 ~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~ 313 (455)
T COG0534 234 KPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNY 313 (455)
T ss_pred CCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 55666789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhH
Q 017516 234 DKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSA 313 (370)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 313 (370)
|++++..+.+..++..++...+.+++++++++..+|++|+|+.+.+..++++.+...++++.+.+..+.+||.||+|.++
T Consensus 314 ~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~ 393 (455)
T COG0534 314 KRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPF 393 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-HHHHHHHHHHHHHhhhc-cCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 017516 314 YSM-VSVAVVSILCLFILSSS-HGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSF 367 (370)
Q Consensus 314 ~~~-~~~~~~~i~~~~~l~~~-~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~w~~ 367 (370)
..+ +..+.+.+|+.+++.+. +|..|+|+++..++.+..+...++++ +.+|+.
T Consensus 394 ~~~~~~~~~~~lp~~~~l~~~~~g~~Gvw~~~~~~~~~~~~~~~~~~~--~~~~~~ 447 (455)
T COG0534 394 IISLLSYWGFRLPLAYLLGFFFLGLAGVWIGFPLSLILRAILLLLRLR--RGRWRR 447 (455)
T ss_pred HHHHHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHH--Hhhhhh
Confidence 965 45788899999999988 99999999999999999999999887 445544
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.7e-45 Score=343.49 Aligned_cols=363 Identities=21% Similarity=0.293 Sum_probs=328.7
Q ss_pred hhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHH
Q 017516 3 LNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLA 82 (370)
Q Consensus 3 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 82 (370)
.+.++|++|++|+|++++..++++.++...+++.+++.+.+.+++.++++.++|+|+.+.+.+|+++..++.|+..+...
T Consensus 89 ~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~ 168 (478)
T PRK10189 89 TVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLI 168 (478)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999988999999999995323344899999999999999999999999
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhh----hccchHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCC----
Q 017516 83 LQGIFRGFKDTKTPFYATILGDLANVILDPIFIFL----FNWGVSGAAIAHVISQYLISLILLWKLIEEVD-LLPP---- 153 (370)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~----~~~g~~g~alat~i~~~~~~~~~~~~~~~~~~-~~~~---- 153 (370)
.++++|+.||++.++..++...++|+.+|++++++ +++|+.|+++||.+++++..+...+++.++.+ ..+.
T Consensus 169 ~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (478)
T PRK10189 169 GSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKS 248 (478)
T ss_pred HHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeecc
Confidence 99999999999999999999999999999999986 48999999999999999998877666554311 1111
Q ss_pred ---CcchhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q 017516 154 ---SSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVK 230 (370)
Q Consensus 154 ---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~ 230 (370)
+.+...+|+++|.|.|..++.........+.+.+++++|++++|+++++.++.++..++..|++++.+|++||++|+
T Consensus 249 ~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga 328 (478)
T PRK10189 249 YFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGK 328 (478)
T ss_pred ccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 12445689999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchh
Q 017516 231 KDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFA 310 (370)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~ 310 (370)
||.+++|+..+.+.+.+++++...+++++++++++..+|++|+|+.+.+..++++.+...++++.+.+..+.++|.||++
T Consensus 329 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~ 408 (478)
T PRK10189 329 GQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDAR 408 (478)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHH-HHHHHHHHHHHHHHhh--hccCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 017516 311 YSAYS-MVSVAVVSILCLFILS--SSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSF 367 (370)
Q Consensus 311 ~~~~~-~~~~~~~~i~~~~~l~--~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~w~~ 367 (370)
.++.. .+..+++.+|+.+++. .++|..|+|++..+++.+..++..++++ +++|++
T Consensus 409 ~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~--~~~W~~ 466 (478)
T PRK10189 409 YAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMV--SGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH--cCcccc
Confidence 99995 5667889999988875 4689999999999999999998888886 666765
No 3
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=4.8e-45 Score=339.85 Aligned_cols=355 Identities=19% Similarity=0.246 Sum_probs=326.9
Q ss_pred hhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHH
Q 017516 3 LNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLA 82 (370)
Q Consensus 3 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 82 (370)
.+.++|++|++|+|+.++.+++++.+..+.+++..++...+.++++++++.|++ +.+.+.+|+++..++.|+..+...
T Consensus 73 ~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~--~~~~~~~yl~i~~~~~~~~~l~~~ 150 (453)
T PRK09575 73 GSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGR--TLELALQYIQVLIWGCLFTLGAIA 150 (453)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999987666 899999999999999999999999
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-----Ccch
Q 017516 83 LQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPP-----SSKD 157 (370)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~~~~g~~g~alat~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 157 (370)
...++|+.||++.++..++...++|+.+|+++++.+++|+.|+++||.+++++..++..++++++++..++ ++++
T Consensus 151 ~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (453)
T PRK09575 151 LPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNW 230 (453)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCH
Confidence 99999999999999999999999999999999998899999999999999999998888777654332221 2344
Q ss_pred hhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCHHHH
Q 017516 158 LKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGS-TSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKA 236 (370)
Q Consensus 158 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~-~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~ 236 (370)
..+|++++.|.|..++.....+...+.+.+++++|+ +++|+++++.++.++...+..|++.+..|.+||++|+||+|++
T Consensus 231 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~ 310 (453)
T PRK09575 231 SLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNI 310 (453)
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHH
Confidence 457899999999999999999999999999999985 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC-CHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHH
Q 017516 237 TTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTK-DLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYS 315 (370)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 315 (370)
++..+++.++++..+++.+++++.+++++..+|++ |||+.+.+..++++.+++.++++++....+.+++.||++.++..
T Consensus 311 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 390 (453)
T PRK09575 311 KKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFI 390 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999999999999999999995 78999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHh
Q 017516 316 MVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIG 359 (370)
Q Consensus 316 ~~~~~~~~i~~~~~l~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 359 (370)
++..+++++|+.+++.+.+|+.|+|+++.+++.+..+....+++
T Consensus 391 ~~~~~~v~ip~~~ll~~~~G~~Gvw~a~~~~~~~~~~~~~~~~~ 434 (453)
T PRK09575 391 SIGNMLIQLPFLFILPKWLGVDGVWLAMPLSNIALSLVVAPMLW 434 (453)
T ss_pred HHHhHHHHHHHHHHHHHHHCcchHhhHHHHHHHHHHHHHHHHHH
Confidence 77778889999999988799999999999999988777766554
No 4
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=3.7e-45 Score=341.08 Aligned_cols=362 Identities=19% Similarity=0.185 Sum_probs=322.7
Q ss_pred hhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHH
Q 017516 3 LNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLA 82 (370)
Q Consensus 3 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 82 (370)
.+.++|++|++|+|+.++.+++++.+.++.+++..++.. +.++++++++.|+| +.+.+.+|+++..++.|+..+...
T Consensus 70 ~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~e--v~~~~~~Yl~i~~~~~~~~~l~~~ 146 (464)
T PRK00187 70 GTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQ--NVDAAMQFLHLLPFALPGYLSFMA 146 (464)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999888777654 67999999987665 899999999999999999999999
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhh----hccchHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CC----
Q 017516 83 LQGIFRGFKDTKTPFYATILGDLANVILDPIFIFL----FNWGVSGAAIAHVISQYLISLILLWKLIEEVDL--LP---- 152 (370)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~----~~~g~~g~alat~i~~~~~~~~~~~~~~~~~~~--~~---- 152 (370)
.++++|+.||++.+++.+++..++|+.+|++++++ +++|+.|+++||.+++....+.+..+++++++. .+
T Consensus 147 ~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (464)
T PRK00187 147 LRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKG 226 (464)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhcc
Confidence 99999999999999999999999999999999986 369999999999999988887776666543211 11
Q ss_pred -CCcchhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc
Q 017516 153 -PSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKK 231 (370)
Q Consensus 153 -~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~ 231 (370)
++++...+|+++|.++|.++++..+.....+++.+++++|++++|+++++.++..+...+..|++++..+.+||++|+|
T Consensus 227 ~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~ 306 (464)
T PRK00187 227 LSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAG 306 (464)
T ss_pred ccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2334456799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC--CH---HHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhc
Q 017516 232 DYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTK--DL---KVLQLIGVGIPFIAVTQPINALAFVFDGINFGA 306 (370)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 306 (370)
|+|++++..+++...+.+++++.+++++.+++++.++|++ |+ |+.+.+..++++.+.+.++++++.+..+++++.
T Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~ 386 (464)
T PRK00187 307 RLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGL 386 (464)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhcc
Confidence 9999999999999999999999999999999999999964 44 678889999999999999999999999999999
Q ss_pred CchhhhHHHHHH-HHHHHHHHHHHhhh--ccCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 017516 307 SDFAYSAYSMVS-VAVVSILCLFILSS--SHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSF 367 (370)
Q Consensus 307 g~~~~~~~~~~~-~~~~~i~~~~~l~~--~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~w~~ 367 (370)
||+|.+++..+. .+++++|+.+++.. ++|+.|+|+++.+++.+..+....+++.++.+|.+
T Consensus 387 G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~~~~~~~ 450 (464)
T PRK00187 387 KDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWKTARLLR 450 (464)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999996655 56999999998874 58999999999999999988777766544444444
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=3.2e-44 Score=331.91 Aligned_cols=350 Identities=21% Similarity=0.285 Sum_probs=306.1
Q ss_pred hhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHH
Q 017516 3 LNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLA 82 (370)
Q Consensus 3 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 82 (370)
.+.++|++|++|+|++++..++++.+.++++++..++...+.++++++++.|+| +.+.+.+|+++..++.|+..+...
T Consensus 70 ~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~--v~~~a~~Yl~i~~~~~~~~~~~~~ 147 (441)
T PRK10367 70 TGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEA--VLEQARRFLEIRWLSAPASLANLV 147 (441)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999998888888889999999987776 899999999999999999999999
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC---cc---
Q 017516 83 LQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPS---SK--- 156 (370)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~~~~g~~g~alat~i~~~~~~~~~~~~~~~~~~~~~~~---~~--- 156 (370)
.++++|+.||++.+++.+++++++|+++|+++++++++|+.|+++||.+++++..+....+++++++..+.+ ++
T Consensus 148 ~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 227 (441)
T PRK10367 148 LLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAW 227 (441)
T ss_pred HHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999999888877776543211111 11
Q ss_pred hhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCHHHH
Q 017516 157 DLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKA 236 (370)
Q Consensus 157 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~ 236 (370)
+...|+++|.|.|..+++........+.+.+++++|++++|+|+++.++.++..++..|++++.+|.++|++|+||+|++
T Consensus 228 ~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a 307 (441)
T PRK10367 228 RGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQL 307 (441)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHH
Confidence 12468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHH----HHhhhhhcCchhhh
Q 017516 237 TTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFV----FDGINFGASDFAYS 312 (370)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~l~~~g~~~~~ 312 (370)
|+..+++.+.+.+.+.+.+++++.+++++..+|++|+|+.+.+..++++.+...+....... +++.+++. |+|.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~-dt~~~ 386 (441)
T PRK10367 308 LDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAA-EMRNS 386 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchH-HHHHH
Confidence 99999999999999999999999999999999999999999999999998875443324433 44555554 58888
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHh
Q 017516 313 AYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIG 359 (370)
Q Consensus 313 ~~~~~~~~~~~i~~~~~l~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 359 (370)
+..++.... +..+..+.+|..|+|++..+++.+..+...++++
T Consensus 387 ~~~~~~~~~----~~~~~~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~ 429 (441)
T PRK10367 387 MAVAAAGFA----LTLLTLPWLGNHGLWLALTVFLALRGLSLAAIWR 429 (441)
T ss_pred HHHHHHHHH----HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 886554322 1223335789999999999999999998888775
No 6
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=1.1e-43 Score=332.03 Aligned_cols=360 Identities=21% Similarity=0.229 Sum_probs=328.1
Q ss_pred hhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHH
Q 017516 3 LNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLA 82 (370)
Q Consensus 3 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 82 (370)
.+.+||++|++|+|+.++.+++++.+.+..+++..++.+.+.+++..+++.|++ +.+.+.+|+++..++.|+..+...
T Consensus 72 ~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~~~~~~yl~i~~~~~~~~~~~~~ 149 (456)
T PRK01766 72 TPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPE--VADIAVGYLHALLWGIPAYLLYQV 149 (456)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999888888889999999987665 789999999999999999999999
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhh----hccchHHHHHHHHHHHHHHHHHHHHHHHhhhcC----C---
Q 017516 83 LQGIFRGFKDTKTPFYATILGDLANVILDPIFIFL----FNWGVSGAAIAHVISQYLISLILLWKLIEEVDL----L--- 151 (370)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~----~~~g~~g~alat~i~~~~~~~~~~~~~~~~~~~----~--- 151 (370)
+++++|+.|+++.+++.+.++.++|+.+|++++++ +++|+.|++++|.+++++..++..++.+++++. .
T Consensus 150 ~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (456)
T PRK01766 150 LRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKG 229 (456)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhcc
Confidence 99999999999999999999999999999999975 578999999999999999999888777654321 0
Q ss_pred CCCcchhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc
Q 017516 152 PPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKK 231 (370)
Q Consensus 152 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~ 231 (370)
.++.++..+|++++.++|..++...+.....+++.+++++|++++++++++.++.++...+..|++.+.++.++|++|+|
T Consensus 230 ~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~ 309 (456)
T PRK01766 230 LYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAG 309 (456)
T ss_pred ccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 12334456899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhh
Q 017516 232 DYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAY 311 (370)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 311 (370)
|++++++..+.+..+++.++++.+++++.+++++.++|++|+++.+.+..++++..+..++++++...++++++.||++.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~ 389 (456)
T PRK01766 310 RTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRV 389 (456)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHH-HHHHHHHHHHhh--hccCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 017516 312 SAYSMVSV-AVVSILCLFILS--SSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWS 366 (370)
Q Consensus 312 ~~~~~~~~-~~~~i~~~~~l~--~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~w~ 366 (370)
++...+.. +++++|..+++. +.+|..|+|+++.+++.+..++..++++ +.+||
T Consensus 390 ~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~--~~~~~ 445 (456)
T PRK01766 390 IFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLR--KLQRQ 445 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 99976654 588999988876 5689999999999999999998888776 33455
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.4e-35 Score=281.41 Aligned_cols=352 Identities=16% Similarity=0.135 Sum_probs=301.4
Q ss_pred hhHHhhhhhh-hhhhhhHHHHHHHHHHH-HHHHHHHHHHchHHHHhhcC--CCCCccchhhHHHHHHHHHhhHHHHHHHH
Q 017516 6 ISAKVEARHE-RKHIPSASSALVIGSVL-GLIQAFFVIAYAKPILNYMG--VNSDSPMIKPAQQYLTLRSLGAPAVLLSL 81 (370)
Q Consensus 6 ~s~~~g~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 81 (370)
+++..+++|+ |++++.+.+++...... +++..++.+.+++++.++++ .++| ..+.+.+|++++.++.|+..+.+
T Consensus 64 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~--~~~~~~~~l~i~~~~~~~~~~~~ 141 (502)
T TIGR01695 64 VPVFTKAKKKEKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADE--TRSLAVSLTRIMFPYLLLISLAA 141 (502)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554 46676777766655544 44456667888899999884 3443 67889999999999999999999
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhhhccchHHHH--HHHHHHHHHHHHHHHHHHHhhhcCCCC--Ccch
Q 017516 82 ALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAA--IAHVISQYLISLILLWKLIEEVDLLPP--SSKD 157 (370)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~~~~g~~g~a--lat~i~~~~~~~~~~~~~~~~~~~~~~--~~~~ 157 (370)
..++++|++||++.++..++..+++++....++ .+++|..|++ +++.+++.+..++...+.+|++.+.++ ++++
T Consensus 142 ~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (502)
T TIGR01695 142 VFGGILNARKRFFIPSFSPILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNFRD 219 (502)
T ss_pred HHHHHHhccCeeHHHHHHHHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCCCCC
Confidence 999999999999999999999999887744333 4678999988 999999999988887776654322233 3345
Q ss_pred hhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhhccCHHHH
Q 017516 158 LKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSL-LADGLAVAAQTILASAFVKKDYDKA 236 (370)
Q Consensus 158 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~-~~~~~~~~~~~~~s~~~g~~~~~~~ 236 (370)
..+|++++.+.|..+++....+...+|+.+.+.+|++++++|+.+.++.+++.. +..+++++..|.+|+++|+||++++
T Consensus 220 ~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~ 299 (502)
T TIGR01695 220 PGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNEL 299 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 678999999999999999999999999988777799999999999999998765 5789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC----CHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhh
Q 017516 237 TTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTK----DLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYS 312 (370)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 312 (370)
++..+++.+....++.+.+.++..+++++..++.+ |+|..+.+..++++++++.++.+++..+.+.+++.||+|.+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~ 379 (502)
T TIGR01695 300 RDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTP 379 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccC
Confidence 99999999999999999999999999999999876 56777889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 017516 313 AYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSG 361 (370)
Q Consensus 313 ~~~~~~~~~~~i~~~~~l~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 361 (370)
++..+...++++++++++.+.+|..|+|+++.+++.+..+...++.+++
T Consensus 380 ~~~~~~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 380 FINSVISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9988888899999999999999999999999999999988887777644
No 8
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=6.8e-33 Score=256.74 Aligned_cols=357 Identities=18% Similarity=0.192 Sum_probs=320.2
Q ss_pred hhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHHH
Q 017516 4 NNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLAL 83 (370)
Q Consensus 4 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 83 (370)
+..++.. ++++|+.++..++........++.++++...+++++.+.+..+.|++..+.+.++++++.+..++..+..++
T Consensus 39 P~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~ 117 (451)
T PF03023_consen 39 PVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIF 117 (451)
T ss_pred HHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666 778888999999999888888888999899999999999876666668889999999999999999999999
Q ss_pred HHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhhhccc---hHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CCcchh
Q 017516 84 QGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWG---VSGAAIAHVISQYLISLILLWKLIEEVDLLP--PSSKDL 158 (370)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~~~~g---~~g~alat~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (370)
.+++|+++|+..+...++..++..++...++ ....| +.+.+++..+|..++.++.....+|...+.+ ++++++
T Consensus 118 ~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~--~~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 195 (451)
T PF03023_consen 118 SAILNAHRRFLIPALSPLLFNLSIILSLLLL--SNSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRDP 195 (451)
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHHHHHHHH--HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCCh
Confidence 9999999999999999999888876643333 34456 8899999999999999998888887654434 345566
Q ss_pred hHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhhccCHHHHH
Q 017516 159 KFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSL-LADGLAVAAQTILASAFVKKDYDKAT 237 (370)
Q Consensus 159 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~-~~~~~~~~~~~~~s~~~g~~~~~~~~ 237 (370)
+.|++++...|..+.+...++...+|+.+.+.+++.++++++.++++.+++.. +..+++++..|.+|++..+||.++.+
T Consensus 196 ~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~ 275 (451)
T PF03023_consen 196 NLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFR 275 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 78999999999999999999999999999999999999999999999998875 57899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC----CHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhH
Q 017516 238 TIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTK----DLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSA 313 (370)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 313 (370)
+..+++.+....+.+|.++.+..+++++++++.. |+|..+.....+.+++++.++++++..+...+++.||+|.++
T Consensus 276 ~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~ 355 (451)
T PF03023_consen 276 KTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPV 355 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHH
Confidence 9999999999999999999999999999888752 677788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 017516 314 YSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGSG 363 (370)
Q Consensus 314 ~~~~~~~~~~i~~~~~l~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 363 (370)
+.++.+.++++.+++.+.+.+|..|+++++.++..+..+..+.+++|+.+
T Consensus 356 ~~~~~~~~lni~l~~~l~~~~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 356 RISVISVVLNIILSILLVPFFGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999988888876544
No 9
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=9.6e-33 Score=261.16 Aligned_cols=347 Identities=18% Similarity=0.235 Sum_probs=295.0
Q ss_pred hhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHHH
Q 017516 4 NNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLAL 83 (370)
Q Consensus 4 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 83 (370)
..++|+.+++|+++.++.+.+++.+.++.+++..++...+.+++...++++++ ...++++..+..|+..+....
T Consensus 62 ~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~ 135 (488)
T TIGR02900 62 KFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDER------SLYSLLVICPAMPFIALSSVL 135 (488)
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChh------HHHHHHHHHHHHHHHHHHHHH
Confidence 35677788999999999999999999999999888888889998887754443 346788889999999999999
Q ss_pred HHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhh-----hccchHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCC----
Q 017516 84 QGIFRGFKDTKTPFYATILGDLANVILDPIFIFL-----FNWGVSGAAIAHVISQYLISLILLWKLIEEVD-LLPP---- 153 (370)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~-----~~~g~~g~alat~i~~~~~~~~~~~~~~~~~~-~~~~---- 153 (370)
++++|+++|++..+..+++++++|+.++..++.. .+.++.|+++++.+++.+..+....+.+++++ +.++
T Consensus 136 ~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (488)
T TIGR02900 136 KGYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFD 215 (488)
T ss_pred HHHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 9999999999999999999999998877666542 35678899999999999998887766554332 1111
Q ss_pred --CcchhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc----C---hH---HHHHH-HHHHHHHHHHHHhHHHHHHHH
Q 017516 154 --SSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQ----G---ST---SMAAF-QVCLQIWLATSLLADGLAVAA 220 (370)
Q Consensus 154 --~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----g---~~---~~a~~-~i~~~i~~~~~~~~~~~~~~~ 220 (370)
+.++..+|++++.+.|..++++...+...+|+.++++. | .+ ..+.+ +++.++.+++..+..+++++.
T Consensus 216 ~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~ 295 (488)
T TIGR02900 216 YKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTAL 295 (488)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHH
Confidence 11234679999999999999999999999999998765 2 12 22333 456678888888899999999
Q ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHH
Q 017516 221 QTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFD 300 (370)
Q Consensus 221 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 300 (370)
.|.+++++|+||+++.++..+++.+....++.+.+..+..+++++..++.++++ +..+++++++..++..++....
T Consensus 296 ~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~ 371 (488)
T TIGR02900 296 VPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQ 371 (488)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998876554 4678999999999999999999
Q ss_pred hhhhhcCchhhhHHHHHHHHHHHHHHHHHhh--hccCchhHHHHHHHHHHHHHHHHHHHHhc
Q 017516 301 GINFGASDFAYSAYSMVSVAVVSILCLFILS--SSHGYVGIWVALSMYMSLRAIAGFLRIGS 360 (370)
Q Consensus 301 ~~l~~~g~~~~~~~~~~~~~~~~i~~~~~l~--~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 360 (370)
+++++.||+|.+++..+...++++++++.+. +.+|..|+|+++.+++.+..+...++.++
T Consensus 372 ~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 372 SILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988888899999999987 99999999999999999998888877763
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=2.4e-32 Score=252.73 Aligned_cols=339 Identities=15% Similarity=0.102 Sum_probs=288.1
Q ss_pred hhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHHHHH
Q 017516 6 ISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQG 85 (370)
Q Consensus 6 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 85 (370)
++|+ ++|+++.++.+++++.+.+..+++.+++.+.+.+++...++.+++ ...+..+..+..+...+....++
T Consensus 66 ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 137 (416)
T PRK15099 66 VAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD------YQGVVRAVALIQMGIAWANLLLA 137 (416)
T ss_pred HHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 677888899999999999999999999899999999988765443 34667777777778888899999
Q ss_pred HHhccCCCchhHHHHHHHHHHHHHhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhhc----CCCCCcchhhHH
Q 017516 86 IFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVD----LLPPSSKDLKFG 161 (370)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~~~~g~~g~alat~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 161 (370)
.+|+.+|++.++..++.+.++|+.+ +++.+.. .|+.|+++|+.+++.+..+....+++++++ +.++++++..+|
T Consensus 138 ~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 215 (416)
T PRK15099 138 ILKGFRDAAGNALSLIVGSLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSWDNGLAG 215 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccCCHHHHH
Confidence 9999999999999999999999887 4444433 399999999999999988777766655432 113345566689
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHhhccCHHHHHHH
Q 017516 162 QFLKNGFLLMVRVIAVTFCVTLAASLAA-RQGSTSMAAFQVCLQIWL-ATSLLADGLAVAAQTILASAFVKKDYDKATTI 239 (370)
Q Consensus 162 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~g~~~~a~~~i~~~i~~-~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~ 239 (370)
+++++|.|..++++...+....++.+++ ++|++++|.|+.+.|+.+ +...+..+++++..|.+++. +|+++.++.
T Consensus 216 ~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~ 292 (416)
T PRK15099 216 QLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITRE 292 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHH
Confidence 9999999999999999999999999996 779999999999999988 55889999999999999995 678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHHHHHH
Q 017516 240 ASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSV 319 (370)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 319 (370)
.++.......++.+.+..+.++++++..++.+|+. +.+.+++++++++.++...+........+.++++......+..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~--~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (416)
T PRK15099 293 IVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKF--TAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ 370 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988763 2367899999999999888888777777777888777788888
Q ss_pred HHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHh
Q 017516 320 AVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIG 359 (370)
Q Consensus 320 ~~~~i~~~~~l~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 359 (370)
..+++++++++++.+|..|+++++.+++.+......+...
T Consensus 371 ~~l~i~l~~~li~~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 371 FTLLTGFAHWLIPLHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988876665443
No 11
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=5.2e-32 Score=244.50 Aligned_cols=282 Identities=34% Similarity=0.506 Sum_probs=257.4
Q ss_pred hhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHH
Q 017516 3 LNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLA 82 (370)
Q Consensus 3 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 82 (370)
.+.++|+.|++|+|+.++.+++.+.+....+++..++...+.+++.+.++.|++ ..+++.+|++++.++.++..+...
T Consensus 53 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~~~~~ 130 (342)
T TIGR00797 53 TALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGE--VAELAQDYLRILILGIPAYLLNFV 130 (342)
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999875554 678899999999999999999999
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHh-hhc-cchHHHHHHHHHHHHHHHHHHHHHHHhhhcC-----CCCCc
Q 017516 83 LQGIFRGFKDTKTPFYATILGDLANVILDPIFIF-LFN-WGVSGAAIAHVISQYLISLILLWKLIEEVDL-----LPPSS 155 (370)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~-~~~-~g~~g~alat~i~~~~~~~~~~~~~~~~~~~-----~~~~~ 155 (370)
.++.+|+.||++.+...++.+.++|+.+++++++ ..+ +|+.|+++++.+++++..++...+.+++++. .+.++
T Consensus 131 ~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (342)
T TIGR00797 131 LRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKP 210 (342)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCC
Confidence 9999999999999999999999999999999987 567 8899999999999999988887776653221 12344
Q ss_pred chhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCHHH
Q 017516 156 KDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDK 235 (370)
Q Consensus 156 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~ 235 (370)
++..+|++++++.|.+++++...+...+++.+++.+|++++++|+++.++.++...+..+++++..|.+++++|+||.++
T Consensus 211 ~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 290 (342)
T TIGR00797 211 DWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKR 290 (342)
T ss_pred CHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHH
Q 017516 236 ATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFI 286 (370)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~ 286 (370)
.++..+++.+..+.++.+.+.++.++++++.++|++||++.+.+..++++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 291 AKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988888764
No 12
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=1.9e-28 Score=223.52 Aligned_cols=359 Identities=15% Similarity=0.095 Sum_probs=305.3
Q ss_pred hhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCC-CccchhhHHHHHHHHHhhHHHHHHHHH
Q 017516 4 NNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNS-DSPMIKPAQQYLTLRSLGAPAVLLSLA 82 (370)
Q Consensus 4 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~~~ 82 (370)
+...|+..++++|+.++.-+........+.+.++++...+.|++.+....+. |++....+....+++.+..++..+...
T Consensus 72 Pv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al 151 (518)
T COG0728 72 PVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSAL 151 (518)
T ss_pred HHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444455555555555556677777788888899999995543332 111223577888999999999999999
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC--CcchhhH
Q 017516 83 LQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPP--SSKDLKF 160 (370)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~~~~g~~g~alat~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 160 (370)
..+.+|+.+|+..+.+..+..++.-+.....+....+....+.++++.++-+.+.++.++.++|.....++ .+++.+.
T Consensus 152 ~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~~~l 231 (518)
T COG0728 152 FGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKDPGL 231 (518)
T ss_pred HHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCchhH
Confidence 99999999999999999999999888555555443332467889999999999999999999887544444 4555689
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHhhccCHHHHHHH
Q 017516 161 GQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATS-LLADGLAVAAQTILASAFVKKDYDKATTI 239 (370)
Q Consensus 161 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~-~~~~~~~~~~~~~~s~~~g~~~~~~~~~~ 239 (370)
|++.+...|..++....++...+|+.+.+.+.+.+++.++.+.++.+++. .+..++++...|.+|++..++|.++.++.
T Consensus 232 k~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~ 311 (518)
T COG0728 232 KRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKL 311 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 56999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC----CHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHH
Q 017516 240 ASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTK----DLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYS 315 (370)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 315 (370)
.+++.+.+..+++|.+..+..+++++++++.. +++..+.+...+..++++.++..+..++...+++.+|+|.|++.
T Consensus 312 l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i 391 (518)
T COG0728 312 LDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKI 391 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHH
Confidence 99999999999999999999999999887642 46667788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 017516 316 MVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSGS 362 (370)
Q Consensus 316 ~~~~~~~~i~~~~~l~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 362 (370)
.+.+.++|+.+++.+.+.+|..|++.+..++..+.+...++.++++.
T Consensus 392 ~ii~~~~n~~l~~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 392 AIISLVVNILLNLLLIPPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999888888777776443
No 13
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.96 E-value=2.2e-28 Score=224.84 Aligned_cols=359 Identities=21% Similarity=0.242 Sum_probs=323.1
Q ss_pred hhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHHH
Q 017516 4 NNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLAL 83 (370)
Q Consensus 4 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 83 (370)
+.++|++|.++++......+++.......+++... .+.+.++++..+++|+| +.+.+..|.+...+..+........
T Consensus 90 tlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~--i~~~a~~y~~~~ip~~~a~~~~~~l 166 (473)
T KOG1347|consen 90 TLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPD--ISRDAGSYAFMLIPGLFSYAVSFPL 166 (473)
T ss_pred cchHhhhcccccchhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChh--HHHHHhhhHhhhcchhhhhHHHHHH
Confidence 46789999999999999999999998888888777 67778999999998887 9999999999999999999999999
Q ss_pred HHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCCCCcchhhH
Q 017516 84 QGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEV---DLLPPSSKDLKF 160 (370)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~~~~g~~g~alat~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 160 (370)
+.++|++++..+..+......++|+.+++++++.+++|..|++++..++++........|..... .....+.+..++
T Consensus 167 ~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~~~~~ 246 (473)
T KOG1347|consen 167 AKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGEFDSW 246 (473)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999998886533 111222335578
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCHHHHHH
Q 017516 161 GQFLKNGFLLMVRVIAVTFCVTLAASLAARQG--STSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATT 238 (370)
Q Consensus 161 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~ 238 (370)
++++|.+.|..++...+...........+.++ ..++++.++..++.....+++.+++.+...++++.+|+||++++|.
T Consensus 247 ~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~ 326 (473)
T KOG1347|consen 247 GPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARV 326 (473)
T ss_pred HHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhh
Confidence 89999999999999999999999999999996 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHH-HH
Q 017516 239 IASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYS-MV 317 (370)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~ 317 (370)
........++..+...+..+...++.+..+|++|+|+.+...+..++++...++++.+.++.++.++.|+++...+. ..
T Consensus 327 ~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~ 406 (473)
T KOG1347|consen 327 SAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLV 406 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998884 45
Q ss_pred HHHHHHHHHHHHhh--hccCchhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 017516 318 SVAVVSILCLFILS--SSHGYVGIWVALSMYMSLRAIAGFLRIGSGSGPWSF 367 (370)
Q Consensus 318 ~~~~~~i~~~~~l~--~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~~w~~ 367 (370)
...++.+|..+.+. .++|..|+|.++..+..+.......... +.+|++
T Consensus 407 ~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~--~tdW~~ 456 (473)
T KOG1347|consen 407 AYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTA--RTDWKN 456 (473)
T ss_pred eeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHhee--eccHHH
Confidence 56677788877765 6799999999999996666665554443 567764
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.96 E-value=5.7e-25 Score=208.08 Aligned_cols=328 Identities=11% Similarity=0.080 Sum_probs=273.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCchhHH
Q 017516 19 IPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFY 98 (370)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 98 (370)
++...+.+.+.+..+++..++.+.+.+++...++.++ ....+.+..+..++..+....+..+|.+++++....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~ 146 (492)
T PRK10459 74 HLQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHNPE-------LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAK 146 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh-------hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHH
Confidence 3455667777777787777777777888877765332 345677888888888888999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhHHHHHhhcHHHHHHHHHHH
Q 017516 99 ATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMVRVIAVT 178 (370)
Q Consensus 99 ~~~~~~~~ni~l~~~~i~~~~~g~~g~alat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 178 (370)
.+...++...+....+.+ .+.|+.+.++++.+++.+..+...+..+ ++.+.++++++...|++++++.|...+++...
T Consensus 147 ~~~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~k~ll~~~~~~~~~~~~~~ 224 (492)
T PRK10459 147 IEISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGR-KIYRPALHFSLASVKPNLSFGAWQTAERIINY 224 (492)
T ss_pred HHHHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhc-ccCCccceecHHHHHHHHhhhHHHHHHHHHHH
Confidence 999888888777666554 5789999999999999887765543322 22222334556678999999999999999999
Q ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 017516 179 FCVTLAASLAARQ-GSTSMAAFQVCLQIWLATSL-LADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTV 256 (370)
Q Consensus 179 ~~~~~~~~~~~~~-g~~~~a~~~i~~~i~~~~~~-~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (370)
+....|+.+++++ |+++++.|+.+.++.+.+.. +...+++...|.+++. ++|.++.++..++..+....+++|...
T Consensus 225 ~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~ 302 (492)
T PRK10459 225 LNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLL 302 (492)
T ss_pred HHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887 99999999999999987654 4556788999999986 678899999999999999999999999
Q ss_pred HHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHHHHHHHHHHHHHHHHhhhccCc
Q 017516 257 NLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGY 336 (370)
Q Consensus 257 ~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~~~~~l~~~~g~ 336 (370)
++...++++..++.+++. +.+...++++++...+..+.......+++.||+|......+....+.+|..+.+.+.+|.
T Consensus 303 ~l~~~a~~ii~ll~g~~~--~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~~~~G~ 380 (492)
T PRK10459 303 GLMVVSNNFVPLVFGEKW--NSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQLAGL 380 (492)
T ss_pred HHHHHhHHHHHHhcChhH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHhhccH
Confidence 999999999988877653 457899999999999999999999999999999999988888888889998888899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 017516 337 VGIWVALSMYMSLRAIAGFLRIG 359 (370)
Q Consensus 337 ~G~~~a~~~~~~~~~~~~~~~~~ 359 (370)
.|+++++.+++.+......+...
T Consensus 381 ~g~a~a~~i~~~~~~~~~~~~~~ 403 (492)
T PRK10459 381 IGVALGFLLVQIINTILSYFLMI 403 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887777664
No 15
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.94 E-value=1.7e-24 Score=200.60 Aligned_cols=207 Identities=21% Similarity=0.245 Sum_probs=198.3
Q ss_pred chhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCHHH
Q 017516 156 KDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDK 235 (370)
Q Consensus 156 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~ 235 (370)
.+...|+++++++|.+++++.+.....+|+.+++++|++++|+.++++++..+...+..+++.+..+.++|++|+||+++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~ 91 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKK 91 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchHH
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHH
Q 017516 236 ATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYS 315 (370)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 315 (370)
+++..+++...+++++++..++.+.+++++..++.+++|+.+.+..|+++..++.++..++..+.+.+++.||+|.+++.
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~ 171 (455)
T COG0534 92 AKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYI 171 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhc----cCchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 017516 316 MVSVAVVSILCLFILSSS----HGYVGIWVALSMYMSLRAIAGFLRIGSGS 362 (370)
Q Consensus 316 ~~~~~~~~i~~~~~l~~~----~g~~G~~~a~~~~~~~~~~~~~~~~~~~~ 362 (370)
++.+.++|++++++++.. +|+.|+++|+.+++.+..+...+++.+++
T Consensus 172 ~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 172 LLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999865 89999999999999999998888877554
No 16
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.94 E-value=3.4e-24 Score=200.47 Aligned_cols=206 Identities=16% Similarity=0.160 Sum_probs=192.0
Q ss_pred CcchhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCH
Q 017516 154 SSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDY 233 (370)
Q Consensus 154 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~ 233 (370)
.++-..+|++++.++|.+++++.......+|+.+++++|++++|+++++.++..+...+..+++.+..+.+||++|+||+
T Consensus 22 ~~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~ 101 (478)
T PRK10189 22 SYRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDR 101 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 44555679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc--CCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhh
Q 017516 234 DKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFT--KDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAY 311 (370)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 311 (370)
|++++..+++..+++.++++.+.+.+.+++++..+++ .|+|+.+.+..|+++..++.++..+....++.+++.||++.
T Consensus 102 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~ 181 (478)
T PRK10189 102 RRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKI 181 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence 9999999999999999999999999999999999995 68999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhh------ccCchhHHHHHHHHHHHHHHHHHHHHh
Q 017516 312 SAYSMVSVAVVSILCLFILSS------SHGYVGIWVALSMYMSLRAIAGFLRIG 359 (370)
Q Consensus 312 ~~~~~~~~~~~~i~~~~~l~~------~~g~~G~~~a~~~~~~~~~~~~~~~~~ 359 (370)
++..++...++|++++++++. ++|+.|+|+|+.+++.+..+...+++.
T Consensus 182 ~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 182 PLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred hHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888899999999888763 689999999999999998777655544
No 17
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.93 E-value=7.1e-24 Score=198.16 Aligned_cols=204 Identities=19% Similarity=0.139 Sum_probs=188.4
Q ss_pred cchhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCHH
Q 017516 155 SKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYD 234 (370)
Q Consensus 155 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~ 234 (370)
+++.++|++++.++|.+++++.+.+...+|+.+++++|++++|+++++.++.++...+..+++.+..+.+||++|+||++
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHH
Q 017516 235 KATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAY 314 (370)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 314 (370)
++++..+++..+..+++++..++.+ +.+++..+|+.|+|+.+.+..|+++.+++.++..+....++++++.||++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999999998877765 678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh------ccCchhHHHHHHHHHHHHHHHHHHHHh
Q 017516 315 SMVSVAVVSILCLFILSS------SHGYVGIWVALSMYMSLRAIAGFLRIG 359 (370)
Q Consensus 315 ~~~~~~~~~i~~~~~l~~------~~g~~G~~~a~~~~~~~~~~~~~~~~~ 359 (370)
.++...++|++++++++. ++|+.|+++|+.+++....+...++++
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~ 213 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIR 213 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888763 489999999999998777665554444
No 18
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.93 E-value=9.4e-24 Score=195.63 Aligned_cols=203 Identities=12% Similarity=0.063 Sum_probs=190.2
Q ss_pred hhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCHHH
Q 017516 157 DLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQ-GSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDK 235 (370)
Q Consensus 157 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~ 235 (370)
.++.|+++|.++|.+++++.+.+...+|+.+++++ |++++|+.+++.++.++...+..+++.+..+.+||++|+||+|+
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 34578999999999999999999999999999999 78899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHH
Q 017516 236 ATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYS 315 (370)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 315 (370)
+++..+++...+.+.+++.......+.+++..+++.|+|+.+.+..|+++.+++.++..+...+.+.+++.||+|.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999998888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh--ccCchhHHHHHHHHHHHHHHHHHHHHh
Q 017516 316 MVSVAVVSILCLFILSS--SHGYVGIWVALSMYMSLRAIAGFLRIG 359 (370)
Q Consensus 316 ~~~~~~~~i~~~~~l~~--~~g~~G~~~a~~~~~~~~~~~~~~~~~ 359 (370)
.+...++|++++++++. ++|+.|+++|+.+++.+..+...+++.
T Consensus 165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~ 210 (441)
T PRK10367 165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVR 210 (441)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998875 789999999999999988777665554
No 19
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.92 E-value=3.1e-23 Score=193.55 Aligned_cols=205 Identities=14% Similarity=0.095 Sum_probs=192.7
Q ss_pred hhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCHHH
Q 017516 157 DLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQ-GSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDK 235 (370)
Q Consensus 157 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~ 235 (370)
+...|++++.++|.+++++.+.+...+|+.+++++ |++++++++++.++.++...+..+++.+..+.++|++|+||+|+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 87 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLEK 87 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHHH
Confidence 33568999999999999999999999999999997 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHH
Q 017516 236 ATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYS 315 (370)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 315 (370)
+++..+++..++.+++++.+++...+++++..+++.|+++.+.+..++++..++.++..+.....+.+++.||++.++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 167 (453)
T PRK09575 88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL 167 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhh--ccCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 017516 316 MVSVAVVSILCLFILSS--SHGYVGIWVALSMYMSLRAIAGFLRIGSG 361 (370)
Q Consensus 316 ~~~~~~~~i~~~~~l~~--~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 361 (370)
++.+.++|+++++++++ ++|+.|+++|+.+++.+..+...++++++
T Consensus 168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 88889999999998875 68999999999999999988877666533
No 20
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.92 E-value=1.5e-22 Score=189.68 Aligned_cols=204 Identities=18% Similarity=0.156 Sum_probs=191.4
Q ss_pred hhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCHHHH
Q 017516 157 DLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKA 236 (370)
Q Consensus 157 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~ 236 (370)
+..+|++++.++|.+++++...+...+|+.+++++|++++++++++.++..+...+..+++.+..|.+|+++|+||++++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~~ 87 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRERI 87 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 44679999999999999999999999999999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHHH
Q 017516 237 TTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSM 316 (370)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 316 (370)
++..+++..+.+.++++.+.+++.+++++..+++.|+++.+.+..++++.+++.++..+...+.+.+++.||++.+++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 167 (456)
T PRK01766 88 AHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIG 167 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhh------hccCchhHHHHHHHHHHHHHHHHHHHHhc
Q 017516 317 VSVAVVSILCLFILS------SSHGYVGIWVALSMYMSLRAIAGFLRIGS 360 (370)
Q Consensus 317 ~~~~~~~i~~~~~l~------~~~g~~G~~~a~~~~~~~~~~~~~~~~~~ 360 (370)
+...+++++++++++ +.+|+.|+++++.+++.+..+...++.++
T Consensus 168 ~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~ 217 (456)
T PRK01766 168 FLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKR 217 (456)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 888899999998876 46899999999999999988887766653
No 21
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.91 E-value=4.8e-21 Score=180.90 Aligned_cols=277 Identities=15% Similarity=0.156 Sum_probs=232.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 017516 63 AQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLW 142 (370)
Q Consensus 63 ~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~~~~g~~g~alat~i~~~~~~~~~~~ 142 (370)
.........+..+........++.+|+.++++......+.+ ..-......+. ........++...+..........
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 191 (480)
T COG2244 116 LALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLI 191 (480)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHH
Confidence 55667889999999999999999999999999999994444 11112112222 134455566666666665555554
Q ss_pred HHH-hhhcCCCCCcc--hhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017516 143 KLI-EEVDLLPPSSK--DLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQ-GSTSMAAFQVCLQIWLATSLLADGLAV 218 (370)
Q Consensus 143 ~~~-~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~i~~~~~~~~~~~~~ 218 (370)
+.. +++...++.++ ...+|+.++.++|..+.+....+....|+.+++++ |+++++.|+.+.++......+..+++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~~~~~~~l~~ 271 (480)
T COG2244 192 LLGKKKRGLKRPILRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLLLIVASALNR 271 (480)
T ss_pred HHHHhhhhccccccCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHHHHHHHHHHH
Confidence 443 22223333344 56789999999999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHH
Q 017516 219 AAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFV 298 (370)
Q Consensus 219 ~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 298 (370)
+..|.+++.+.++|.++.++..+++.+....++.|..+++..+++++..++.++++. .+...+.++++..++..+...
T Consensus 272 ~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~ 349 (480)
T COG2244 272 VLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSL 349 (480)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888776652 268899999999999999999
Q ss_pred HHhhhhhcCchhhhHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHH
Q 017516 299 FDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSM 345 (370)
Q Consensus 299 ~~~~l~~~g~~~~~~~~~~~~~~~~i~~~~~l~~~~g~~G~~~a~~~ 345 (370)
....+++.|+++...+......++++.+++.+++.+|..|...++..
T Consensus 350 ~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~~~g~~g~~~a~~~ 396 (480)
T COG2244 350 TSSLLQALGKQRLLLLISLISALLNLILNLLLIPRFGLIGAAIATAS 396 (480)
T ss_pred HHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999833
No 22
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.85 E-value=7e-19 Score=158.88 Aligned_cols=192 Identities=20% Similarity=0.208 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Q 017516 169 LLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSV 248 (370)
Q Consensus 169 p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 248 (370)
|.+++++...+...+|+.+++++|++++++++++.++..+...+..+++++..|.+++++|+||+|++++..++...+..
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 80 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLAL 80 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHHHHHHHHHHHHHHH
Q 017516 249 VLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLF 328 (370)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~~~~ 328 (370)
..+++.+++..++++++..+++.|++..+.+..+++++++..++.+++....+.+++.||.+.+....+...++++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~ 160 (342)
T TIGR00797 81 LLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNY 160 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999987888888899999999999999999999999999999999999988888888998888
Q ss_pred Hhhh-c---cCchhHHHHHHHHHHHHHHHHHHHHhc
Q 017516 329 ILSS-S---HGYVGIWVALSMYMSLRAIAGFLRIGS 360 (370)
Q Consensus 329 ~l~~-~---~g~~G~~~a~~~~~~~~~~~~~~~~~~ 360 (370)
.+.+ . +|+.|+++++.+++.+..+...++.++
T Consensus 161 ~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 161 ILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7776 4 459999999999999988877766653
No 23
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.82 E-value=1.6e-20 Score=150.65 Aligned_cols=161 Identities=24% Similarity=0.380 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Q 017516 169 LLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSV 248 (370)
Q Consensus 169 p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~ 248 (370)
|..++++.+.....+++.+++++|++++++++++.++.++...+..|++++..+.+||++|++|+|++++..+++..+..
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSL 80 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccch
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHHHHHHH-HHHHHHH
Q 017516 249 VLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVA-VVSILCL 327 (370)
Q Consensus 249 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~i~~~ 327 (370)
.++++.+++...+++++..+|++|+|+.+.+..++++..+..++..+.....+++++.||++.+++..+... ++++|++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~ 160 (162)
T PF01554_consen 81 IIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLA 160 (162)
T ss_dssp HHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999777765 9999998
Q ss_pred HH
Q 017516 328 FI 329 (370)
Q Consensus 328 ~~ 329 (370)
|+
T Consensus 161 yl 162 (162)
T PF01554_consen 161 YL 162 (162)
T ss_dssp HH
T ss_pred hC
Confidence 74
No 24
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.59 E-value=1.8e-12 Score=113.09 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 017516 75 PAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPS 154 (370)
Q Consensus 75 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~~~~g~~g~alat~i~~~~~~~~~~~~~~~~~~~~~~~ 154 (370)
+..........++|+.++.+.....++...+...++..+++.. +.+..+...+..+++.+..++...+.+|+.+..+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (273)
T PF01943_consen 120 ILSSLSSVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLRPRFSF 198 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 5788888999999999999999999999999988776666654 445899999999999999888888887655433334
Q ss_pred cchhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 017516 155 SKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQ-GSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASA 227 (370)
Q Consensus 155 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~ 227 (370)
.++...|+.++.+.|..+.++...+....|+.+++++ |++++|.|+++.++.+....+..++.++..|.+++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 199 FSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466789999999999999999999999999999998 999999999999999999999999999999999975
No 25
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.57 E-value=1.6e-12 Score=123.68 Aligned_cols=196 Identities=16% Similarity=0.133 Sum_probs=156.7
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHHHHHh-cChHHH-HHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHhhccCHHHHHH
Q 017516 163 FLKNGFLLMVRVIAVTFCVTLAASLAAR-QGSTSM-AAFQVCLQIWLATSLLA--DGLAVAAQTILASAFVKKDYDKATT 238 (370)
Q Consensus 163 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~g~~~~-a~~~i~~~i~~~~~~~~--~~~~~~~~~~~s~~~g~~~~~~~~~ 238 (370)
+.|-+.-.++.++...+...++..++++ +|+++. ++++.+.++.+....+. .|++++..|...+..+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 4566677788888999999999999999 599999 89999999988766553 368888878776654333 57776
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhhhhhhccc--CCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHH
Q 017516 239 IASHVLQLSVVLG-LVLTVNLLVGLPFSSRLFT--KDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYS 315 (370)
Q Consensus 239 ~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 315 (370)
....+........ +...++.+++++++..++. .|++..+.+..++++..++.++..+.....+++++.||.+.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 6666665555444 4456778888999999883 356666889999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhhccCchhHH--HHHHHHHHHHHHHHHHHHhc
Q 017516 316 MVSVAVVSILCLFILSSSHGYVGIW--VALSMYMSLRAIAGFLRIGS 360 (370)
Q Consensus 316 ~~~~~~~~i~~~~~l~~~~g~~G~~--~a~~~~~~~~~~~~~~~~~~ 360 (370)
.+...++++...+++.+.+|..|+. +++.++..+..+....+.++
T Consensus 160 ~i~~~i~~i~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~ 206 (502)
T TIGR01695 160 PILFNIGVILSLLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRK 206 (502)
T ss_pred HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766666677899999998 99999999888877665543
No 26
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.55 E-value=1e-12 Score=124.66 Aligned_cols=191 Identities=21% Similarity=0.283 Sum_probs=161.9
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhhccCHHHHHHHHH
Q 017516 164 LKNGFLLMVRVIAVTFCVTLAASLAARQ-GSTSMAAFQVCLQIWLATSLLA-DGLAVAAQTILASAFVKKDYDKATTIAS 241 (370)
Q Consensus 164 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~i~~~~~~~~-~~~~~~~~~~~s~~~g~~~~~~~~~~~~ 241 (370)
.|.+.|.+++++.......+++.++++. |+++.++++.+.++..+...+. .|++++....+++..|++|+++.++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 4678999999999999999999999996 9999999999999988877765 5899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHHHHHHHH
Q 017516 242 HVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAV 321 (370)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 321 (370)
.+..+.+..+++.++++..+++++...+.+|++. ..+++++++..++..+.....+.+++.+|.|..+...+...+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999999999999999998877666653 356778888999999999999999999999999998877777
Q ss_pred HHHHHHHHhh-------hccCchhHHHHHHHHHHHHHHHHHHHH
Q 017516 322 VSILCLFILS-------SSHGYVGIWVALSMYMSLRAIAGFLRI 358 (370)
Q Consensus 322 ~~i~~~~~l~-------~~~g~~G~~~a~~~~~~~~~~~~~~~~ 358 (370)
+++.+...+. .+.|+.|..+++.+++.+..+...+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~ 201 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFF 201 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7655533332 245677888888888888777665544
No 27
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.47 E-value=4.8e-12 Score=117.12 Aligned_cols=201 Identities=15% Similarity=0.091 Sum_probs=185.5
Q ss_pred hhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHhhccCHHHH
Q 017516 158 LKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLA-TSLLADGLAVAAQTILASAFVKKDYDKA 236 (370)
Q Consensus 158 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~-~~~~~~~~~~~~~~~~s~~~g~~~~~~~ 236 (370)
.+.|++++++.|..+..+.+.....++..+++|+|+.++++.+++++..+. ...+..++..+..+..+|++|.++++..
T Consensus 25 ~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~l 104 (473)
T KOG1347|consen 25 TESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTAL 104 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccchh
Confidence 456899999999999999999999999999999999999999999999885 5778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHHH
Q 017516 237 TTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSM 316 (370)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 316 (370)
....+++.......+.+.+. ++.+.+++...+..|+++...+..+.++..+..+-+.....+...+++.+++....+..
T Consensus 105 g~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 105 GVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999888888888887 55666899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh--hccCchhHHHHHHHHHHHHHHHHHHHHh
Q 017516 317 VSVAVVSILCLFILS--SSHGYVGIWVALSMYMSLRAIAGFLRIG 359 (370)
Q Consensus 317 ~~~~~~~i~~~~~l~--~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 359 (370)
....++++++++.++ +++|..|+..+..+++.........+..
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~ 228 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAV 228 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhe
Confidence 999999999999987 5788999999999999888887776665
No 28
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.43 E-value=2e-10 Score=98.85 Aligned_cols=198 Identities=19% Similarity=0.228 Sum_probs=144.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHHHHHHHhccCC
Q 017516 13 RHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKD 92 (370)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (370)
+|+++.++..+.......+.+++..+ ....+...++. ++ ...++....+..+...+....++.+++++|
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (251)
T PF13440_consen 51 RDKQDIRSLLRFSLLVSLLLAVILAI----LAILIAYFFGD-PE------LFWLLLLLALAIFFSALSQLFRSILRARGR 119 (251)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhCC-hh------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 44444555555554443333333322 22333334432 22 445667777888889999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhhHHHHHhhcHHHHH
Q 017516 93 TKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLKFGQFLKNGFLLMV 172 (370)
Q Consensus 93 ~~~~~~~~~~~~~~ni~l~~~~i~~~~~g~~g~alat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 172 (370)
.+.....+.........+..++.+ .+.+..+..++..+++.+..++.....+++ .+.+. +.+.++.+|.+.|..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~ 194 (251)
T PF13440_consen 120 FRAYALIDIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLRRK---LRLSF-KFSWRRLLKYGLPFSL 194 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhccc---cCCCc-hhhHHHHHHHHHHHHH
Confidence 999999999999988555444443 344888999999999888777665533322 12222 2233348999999999
Q ss_pred HHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHH
Q 017516 173 RVIAVTFCVTLAASLAAR-QGSTSMAAFQVCLQIWLATS-LLADGLAVAAQTILAS 226 (370)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~-~g~~~~a~~~i~~~i~~~~~-~~~~~~~~~~~~~~s~ 226 (370)
.++........|..+++. +|++++|.|+++.++.+.+. .+..++++...|.+++
T Consensus 195 ~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 195 SSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999 69999999999999999887 8999999999999986
No 29
>PRK15099 O-antigen translocase; Provisional
Probab=99.43 E-value=2.2e-11 Score=113.00 Aligned_cols=191 Identities=14% Similarity=0.111 Sum_probs=151.1
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhhccCHHHHHHHH
Q 017516 163 FLKNGFLLMVRVIAVTFCVTLAASLAARQ-GSTSMAAFQVCLQIWLATSLL-ADGLAVAAQTILASAFVKKDYDKATTIA 240 (370)
Q Consensus 163 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~i~~~~~~~-~~~~~~~~~~~~s~~~g~~~~~~~~~~~ 240 (370)
+.|-+...............+...+.+++ |+++.+..+....+..+...+ ..|++++....++++ ++|+++.++..
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 34555566666666676666666666666 999999999999988866665 778888888888887 68899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHHHHHHH
Q 017516 241 SHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVA 320 (370)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 320 (370)
..++...+..+++.++..+.+++++...+.+|++. ...+.+..+..++..+.....+.+++.||.+.++...+.+.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877776652 35555666666677888899999999999999999888888
Q ss_pred HHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHh
Q 017516 321 VVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIG 359 (370)
Q Consensus 321 ~~~i~~~~~l~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 359 (370)
++++.+........|+.|+++++.+++.+..+...++++
T Consensus 157 ~~~i~l~i~~~~~~Gv~Ga~iat~i~~~i~~~~~~~~~~ 195 (416)
T PRK15099 157 LIGVAAYYLCYRLGGYEGALLGLALVPALVVLPAGIMLI 195 (416)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777322233449999999999999887766555444
No 30
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.27 E-value=1.7e-09 Score=100.84 Aligned_cols=171 Identities=21% Similarity=0.203 Sum_probs=148.4
Q ss_pred HhcC-hHHHHHHHHHHHHHHHHHHh-H-HHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017516 189 ARQG-STSMAAFQVCLQIWLATSLL-A-DGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFS 265 (370)
Q Consensus 189 ~~~g-~~~~a~~~i~~~i~~~~~~~-~-~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 265 (370)
..+| ..+..+|.++.++-++.... . .+++++..|...+.. ++|.|+.++..+..........+.++.+.+++++++
T Consensus 3 ~~fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~i 81 (451)
T PF03023_consen 3 YFFGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPI 81 (451)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456 45677999999999988754 3 468999999999999 899999999999999999999999999999999999
Q ss_pred hhcccC--CHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHHHHHHHHHHHHHHHHhhhccC---chhHH
Q 017516 266 SRLFTK--DLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHG---YVGIW 340 (370)
Q Consensus 266 ~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~~~~~l~~~~g---~~G~~ 340 (370)
+.++.+ |++..+.+...+++..+..++.++..++.+++++.+|...+....+...+..+...+++....| +.+++
T Consensus 82 v~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~~~~~~i~~la 161 (451)
T PF03023_consen 82 VRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNSWGQENIYALA 161 (451)
T ss_pred HHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 999864 6788899999999999999999999999999999999999988777666666666666677788 89999
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 017516 341 VALSMYMSLRAIAGFLRIGS 360 (370)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~ 360 (370)
+|+.++..+..+......++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~ 181 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRR 181 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888777663
No 31
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.26 E-value=6.6e-09 Score=96.11 Aligned_cols=168 Identities=21% Similarity=0.221 Sum_probs=135.1
Q ss_pred chhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCC--ccchhhHHHHHHHHHhhHHHHHH
Q 017516 2 TLNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSD--SPMIKPAQQYLTLRSLGAPAVLL 79 (370)
Q Consensus 2 ~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~ 79 (370)
.++.+||+..++|.++.++..+.++.+++++.++.+..+..+++++.+.+....+ ++-.....+-++....+.++..+
T Consensus 292 llP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L 371 (518)
T COG0728 292 LLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFAL 371 (518)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHH
Confidence 3688999999999999999999999999999999999999999999988633221 11255677889999999999999
Q ss_pred HHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhh
Q 017516 80 SLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLPPSSKDLK 159 (370)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~~~~g~~g~alat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (370)
..++...+.+++|+|.|+.+.+++.++|+.+|+.+. +.+|..|.++++.++.+++..++.+..+|+... .+...+..
T Consensus 372 ~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~-~~~~~~~~ 448 (518)
T COG0728 372 VKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLVY-LPGRGWGL 448 (518)
T ss_pred HHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccchhhH
Confidence 999999999999999999999999999999996655 567888899999999999988887777665433 22323322
Q ss_pred HHHHHhhcHHHHHH
Q 017516 160 FGQFLKNGFLLMVR 173 (370)
Q Consensus 160 ~~~~~~~~~p~~~~ 173 (370)
.. ..|..+-..+.
T Consensus 449 ~~-~~k~~l~~~i~ 461 (518)
T COG0728 449 FL-ILKLLLASAIM 461 (518)
T ss_pred HH-HHHHHHHHHHH
Confidence 23 44544444443
No 32
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.20 E-value=1.6e-11 Score=98.35 Aligned_cols=109 Identities=23% Similarity=0.433 Sum_probs=103.1
Q ss_pred hhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHH
Q 017516 3 LNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLA 82 (370)
Q Consensus 3 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 82 (370)
-+.++|.+|++|+|+.++..+.++.+....+++..++...+.+++.+.++.|+| +.+++.+|+++..++.|+..+...
T Consensus 53 ~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 130 (162)
T PF01554_consen 53 QILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPE--VIEIARQYLRIMAFSIPFFALFFV 130 (162)
T ss_dssp HHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTC--CHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHH--HHHHhhccchhhhhHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999987776 899999999999999999999999
Q ss_pred HHHHHhccCCCchhHHHHHHHH-HHHHHhhHH
Q 017516 83 LQGIFRGFKDTKTPFYATILGD-LANVILDPI 113 (370)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~-~~ni~l~~~ 113 (370)
.++++|+.||++.+++.++... ++|+.++|+
T Consensus 131 ~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 131 FSGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp HCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 9999999999999999999999 999998874
No 33
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=8e-07 Score=78.93 Aligned_cols=293 Identities=13% Similarity=0.100 Sum_probs=185.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhH-HHHhhh-ccchHHHHHHHHHHHHHHHHHHHHHH
Q 017516 67 LTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDP-IFIFLF-NWGVSGAAIAHVISQYLISLILLWKL 144 (370)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~-~~i~~~-~~g~~g~alat~i~~~~~~~~~~~~~ 144 (370)
..+...+...-.+...+.-..|..-+.+.-.....+..++.-...+ .++.++ ..++.--|+|.........+...++.
T Consensus 126 I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Y 205 (530)
T KOG2864|consen 126 IFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFY 205 (530)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3334444444444444445555555556666666666666633222 333333 34444445555444433333122222
Q ss_pred HhhhcCC------------CCCc-ch---hhH-HHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc---ChHHHHHHHHHHH
Q 017516 145 IEEVDLL------------PPSS-KD---LKF-GQFLKNGFLLMVRVIAVTFCVTLAASLAARQ---GSTSMAAFQVCLQ 204 (370)
Q Consensus 145 ~~~~~~~------------~~~~-~~---~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~---g~~~~a~~~i~~~ 204 (370)
.+.++.. -|+. ++ ..+ ++..|......-++..-.+.+.-+..+++.. .-++-|.|...++
T Consensus 206 f~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n 285 (530)
T KOG2864|consen 206 FYIRGSIPETEPFSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSN 285 (530)
T ss_pred HHHcCCcccccchhhhhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHh
Confidence 2221100 0000 01 001 4566666666667777777766666666533 4567888999988
Q ss_pred HHH-HHHHhHHHHHHHHHHHHHHHhhccCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHH
Q 017516 205 IWL-ATSLLADGLAVAAQTILASAFVKKDYDKATTIA---SHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIG 280 (370)
Q Consensus 205 i~~-~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 280 (370)
.-+ +.-.+...+-.......++...+++.|+.|+.. .+.++....+++....+-...++.+..++.+++.....+.
T Consensus 286 ~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~ 365 (530)
T KOG2864|consen 286 YGSLLARLIFRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGS 365 (530)
T ss_pred hhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCch
Confidence 877 445677888888888888888887777666654 4445555555555544445566677787777554444567
Q ss_pred hHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHH---HHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHH
Q 017516 281 VGIPFIAVTQPINALAFVFDGINFGASDFAYSAY---SMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLR 357 (370)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~i~~~~~l~~~~g~~G~~~a~~~~~~~~~~~~~~~ 357 (370)
..++++|+..++.+++.+..+.+.+.++.+..-. .+.+..+..+..+++++..+|..|...|.++...++-+....+
T Consensus 366 ~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~~~~~GlIlANiiNm~lRIlys~~f 445 (530)
T KOG2864|consen 366 LLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRWFGLVGLILANIINMSLRILYSLRF 445 (530)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999988876655 4566677888999999999999999999999998887766555
Q ss_pred Hh
Q 017516 358 IG 359 (370)
Q Consensus 358 ~~ 359 (370)
++
T Consensus 446 I~ 447 (530)
T KOG2864|consen 446 IR 447 (530)
T ss_pred HH
Confidence 54
No 34
>PRK10459 colanic acid exporter; Provisional
Probab=99.02 E-value=4e-07 Score=86.55 Aligned_cols=136 Identities=9% Similarity=0.025 Sum_probs=111.9
Q ss_pred hhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHHH
Q 017516 4 NNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLAL 83 (370)
Q Consensus 4 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 83 (370)
+.+|+. ++|+++.++.+.+.......++++..+.+...++++...+.+++ ..++...+.++.+...+.......
T Consensus 270 P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~----~~~a~~~l~il~~~~~~~~~~~~~ 343 (492)
T PRK10459 270 PVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK----WNSAIPILQLLCIVGLLRSVGNPI 343 (492)
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh----HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444553 56778888999999999888888888888899999998876543 566889999999999999999999
Q ss_pred HHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017516 84 QGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEE 147 (370)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~~~~g~~g~alat~i~~~~~~~~~~~~~~~~ 147 (370)
...+++.||.+.+...+++.+++++...+.+. ..+|..|+++++.+++.+......++..|+
T Consensus 344 ~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 344 GSLLLAKGRADLSFKWNVFKTFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHcCccchhHHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888776554444 467999999999999998888777666443
No 35
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.96 E-value=2.4e-07 Score=87.46 Aligned_cols=280 Identities=15% Similarity=0.082 Sum_probs=194.1
Q ss_pred HHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhh-hccch------HHHHHHHHHHHHHHHHHHHHHHHh-h-hc-
Q 017516 80 SLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFL-FNWGV------SGAAIAHVISQYLISLILLWKLIE-E-VD- 149 (370)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~-~~~g~------~g~alat~i~~~~~~~~~~~~~~~-~-~~- 149 (370)
....+..+.-..|.+..........+++..+....... .+++. .-+.++-.+++....+........ . ..
T Consensus 152 ~il~Q~~l~~~~Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~ 231 (549)
T PF04506_consen 152 YILAQQMLFFKLRVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPF 231 (549)
T ss_pred HHHHHHHhhhheeeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcc
Confidence 34445566666667777777777777666544333211 01111 122345556665554433322111 1 11
Q ss_pred ----CCCCCcchh-----h-HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHh--c-ChHHHHHHHHHHHHHHH-HHHhHHH
Q 017516 150 ----LLPPSSKDL-----K-FGQFLKNGFLLMVRVIAVTFCVTLAASLAAR--Q-GSTSMAAFQVCLQIWLA-TSLLADG 215 (370)
Q Consensus 150 ----~~~~~~~~~-----~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~-g~~~~a~~~i~~~i~~~-~~~~~~~ 215 (370)
...++.+.. . -++.++.......+++.-.+.+.-|.+++.. + ..++-|.|+++++.-++ .-.+...
T Consensus 232 ~~~s~~lp~i~~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~P 311 (549)
T PF04506_consen 232 KSFSDLLPKISSGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQP 311 (549)
T ss_pred cchhhccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCc
Confidence 111111110 1 2678899999999999999999999999988 5 78999999999999884 4567778
Q ss_pred HHHHHHHHHHHHhhccCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHH
Q 017516 216 LAVAAQTILASAFVKKDY---------DKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFI 286 (370)
Q Consensus 216 ~~~~~~~~~s~~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~ 286 (370)
+-.+.....++...+++. ++..+.....++....++++...+-...++.+..++.+++.....+...++++
T Consensus 312 iEEs~~~~Fsk~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~y 391 (549)
T PF04506_consen 312 IEESSRLYFSKLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAY 391 (549)
T ss_pred HHHHHHHHHHHHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHH
Confidence 888888888888765433 44666677777777777777777667777777787766544444568999999
Q ss_pred HHHhhhHHHHHHHHhhhhhcCchhhhHH---HHHHHHHHHHHHHHHhhh-ccCchhHHHHHHHHHHHHHHHHHHHHh
Q 017516 287 AVTQPINALAFVFDGINFGASDFAYSAY---SMVSVAVVSILCLFILSS-SHGYVGIWVALSMYMSLRAIAGFLRIG 359 (370)
Q Consensus 287 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~i~~~~~l~~-~~g~~G~~~a~~~~~~~~~~~~~~~~~ 359 (370)
|...|+.+++.+......+..+.+.... .+....++.+..++++.. .+|..|..+|..+....+.+....+++
T Consensus 392 c~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~~~G~~GlI~AN~iNM~lRI~ys~~fI~ 468 (549)
T PF04506_consen 392 CYYIPFLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRWGLGAVGLILANCINMSLRIIYSLRFIR 468 (549)
T ss_pred HHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988776555 344556666777888888 599999999999999998887776665
No 36
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.75 E-value=1.4e-06 Score=82.66 Aligned_cols=123 Identities=18% Similarity=0.231 Sum_probs=110.4
Q ss_pred hhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHH
Q 017516 3 LNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLA 82 (370)
Q Consensus 3 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 82 (370)
.+.++|...++|+++.++...++.......+++..+....+++++...+.+++. ..+...+..+.+..++..+...
T Consensus 274 ~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~----~~~~~~l~il~~~~~~~~~~~~ 349 (480)
T COG2244 274 FPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY----ASAAPILQLLALAGLFLSLVSL 349 (480)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc----cchhHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999988765542 3378899999999999999999
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhhhccchHHHHHHHHHH
Q 017516 83 LQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVIS 132 (370)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~~~~g~~g~alat~i~ 132 (370)
....+++.|+.+........+.++|.+++++++ +..|..|++.++ .+
T Consensus 350 ~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li--~~~g~~g~~~a~-~~ 396 (480)
T COG2244 350 TSSLLQALGKQRLLLLISLISALLNLILNLLLI--PRFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHH--HhhhhhhHHHHH-HH
Confidence 999999999999999999999999999998887 568999999999 44
No 37
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.67 E-value=2.9e-06 Score=66.42 Aligned_cols=80 Identities=34% Similarity=0.539 Sum_probs=73.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 017516 67 LTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIE 146 (370)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~~~~g~~g~alat~i~~~~~~~~~~~~~~~ 146 (370)
+++++++.++..+.......+++.||++.......++.++|+.++++++ +++|..|+++++.+++.+......++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999996 67999999999999999998888877776
Q ss_pred hh
Q 017516 147 EV 148 (370)
Q Consensus 147 ~~ 148 (370)
+.
T Consensus 80 ~~ 81 (146)
T PF14667_consen 80 KI 81 (146)
T ss_pred Hh
Confidence 64
No 38
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.55 E-value=5.9e-05 Score=65.50 Aligned_cols=185 Identities=22% Similarity=0.277 Sum_probs=117.6
Q ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhhccCHHHHHHHHH
Q 017516 164 LKNGFLLMVRVIAVTFCVTLAASLAARQ-GSTSMAAFQVCLQIWLATSLL-ADGLAVAAQTILASAFVKKDYDKATTIAS 241 (370)
Q Consensus 164 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~i~~~i~~~~~~~-~~~~~~~~~~~~s~~~g~~~~~~~~~~~~ 241 (370)
+|.+......+....+...+...++.+. |+++.|.++....+.++...+ ..|++++..-..+++..+ .++.++...
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 3455556666667766666666666665 999999999999999977765 778888888778776443 233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHHHHHHHH
Q 017516 242 HVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAV 321 (370)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 321 (370)
.......+.++...... .+...+.+++.. ..+........++.........++++.++.+......+...+
T Consensus 80 ~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLIL-----LIASFFGNPSLS----LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHcCCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332222222222 222233333321 122222222226788888889999999999988887777766
Q ss_pred HHHHHHHHhhh-ccCchhHHHHHHHHHHHHHHHHHHHHh
Q 017516 322 VSILCLFILSS-SHGYVGIWVALSMYMSLRAIAGFLRIG 359 (370)
Q Consensus 322 ~~i~~~~~l~~-~~g~~G~~~a~~~~~~~~~~~~~~~~~ 359 (370)
..+.+.+.+.. ..+..+...+..++..+..+......+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (273)
T PF01943_consen 151 LSLLLILLLLFLGSSLWGFLLGLVISSLVSLIISLFYLR 189 (273)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555543 334888889999999888777776665
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.51 E-value=7.8e-07 Score=69.66 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=74.3
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 017516 283 IPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIGSG 361 (370)
Q Consensus 283 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~~~~~l~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 361 (370)
+++++++.++.+++...++++++.||+|..++.++.+.++++++++.++|++|..|+++++.+++.+......++.+|+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~ 80 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPRFGIYGAAIATAISEIVSFILNLWYVRKK 80 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999999999999999999999999999998888877754
No 40
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.40 E-value=0.00024 Score=60.87 Aligned_cols=164 Identities=18% Similarity=0.216 Sum_probs=106.0
Q ss_pred HHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017516 182 TLAASLAARQ-GSTSMAAFQVCLQIWLATSLL-ADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLL 259 (370)
Q Consensus 182 ~~~~~~~~~~-g~~~~a~~~i~~~i~~~~~~~-~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (370)
.....++++. |+++.|.|+....+..+...+ ..|+.+...- ..++|+++.++..+.......+.++....+.
T Consensus 5 f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (251)
T PF13440_consen 5 FLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILA- 78 (251)
T ss_pred HHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3444555555 999999999999999877776 4445444322 2346667777776666555444444433332
Q ss_pred HhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHHHHHHHHHHHHHH-HHhhhccCchh
Q 017516 260 VGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCL-FILSSSHGYVG 338 (370)
Q Consensus 260 ~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~~~-~~l~~~~g~~G 338 (370)
..+...+ ++++ ...++....+..++..+.....+.+++.+|.+......+...+..+.+. .......+..+
T Consensus 79 ---~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (251)
T PF13440_consen 79 ---ILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYLGLNLWS 150 (251)
T ss_pred ---HHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 2222233 4443 2345566677788889999999999999999998877666655553332 22233348888
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 017516 339 IWVALSMYMSLRAIAGFLRIG 359 (370)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~~~ 359 (370)
..++..++..+..+......+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 151 ILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999998887776555443
No 41
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.96 E-value=0.0083 Score=51.71 Aligned_cols=164 Identities=12% Similarity=0.109 Sum_probs=114.2
Q ss_pred hhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc--Ch-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCH
Q 017516 157 DLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQ--GS-TSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDY 233 (370)
Q Consensus 157 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--g~-~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~ 233 (370)
..+++++.++-.|..+++....+...+.+.-+++- .+ +.+|+|+++..+.-++..+...+-+.....+.+ ++
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hh
Confidence 34678999999999999999999988877777763 33 559999999999999988888877766555543 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhhh-hhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcC
Q 017516 234 DKATTIASHVLQLSVVLGLVLTVN-----LLVGLPFS-SRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGAS 307 (370)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i-~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g 307 (370)
++-+. .....+.+...+.+ .-.+++.+ -.++.-||++.+.+...+.++.+..+++++....+|++.-.+
T Consensus 82 srr~~-----vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r 156 (345)
T PF07260_consen 82 SRRKA-----VLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHR 156 (345)
T ss_pred hhHHH-----HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcc
Confidence 22221 11222233333222 12233333 466677899999999999999999999999999999998776
Q ss_pred chhhhHHHHHHHHHHHHHHHHHh
Q 017516 308 DFAYSAYSMVSVAVVSILCLFIL 330 (370)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~~~l 330 (370)
++......++......+....++
T Consensus 157 ~s~iV~~aSI~~v~~qvV~v~~l 179 (345)
T PF07260_consen 157 HSWIVGSASIADVIAQVVLVAIL 179 (345)
T ss_pred ceeEeehHHHHHHHHHHHHHHHH
Confidence 66666666665544444443333
No 42
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.69 E-value=0.029 Score=48.53 Aligned_cols=159 Identities=16% Similarity=0.096 Sum_probs=97.0
Q ss_pred hhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhh---hccchHHH
Q 017516 49 NYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFL---FNWGVSGA 125 (370)
Q Consensus 49 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~---~~~g~~g~ 125 (370)
+..+.+|+ +.+.++..+.++...-.+..+....++++--+++.......++...+..++...+++.. +.-+..--
T Consensus 116 ~lhgVs~~--va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllip 193 (345)
T PF07260_consen 116 DLHGVSPS--VAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIP 193 (345)
T ss_pred HHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHH
Confidence 34565655 88889999999988888899999999888866666666555555555554444444422 11122222
Q ss_pred HHHHHHHHHHHHHHH-HHHH---HhhhcCC-CC-CcchhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHh-c-Ch----
Q 017516 126 AIAHVISQYLISLIL-LWKL---IEEVDLL-PP-SSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAAR-Q-GS---- 193 (370)
Q Consensus 126 alat~i~~~~~~~~~-~~~~---~~~~~~~-~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~-g~---- 193 (370)
.++...+..+-.... ..|. +.+.+.. .+ +-+....++++++.+|.+.....+...-.+.+.++++ + |.
T Consensus 194 il~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~ 273 (345)
T PF07260_consen 194 ILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAAT 273 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccch
Confidence 233333333322222 2222 1111111 11 2233468899999999999999999999999999999 4 43
Q ss_pred HHHHHHHHHHHHHHHH
Q 017516 194 TSMAAFQVCLQIWLAT 209 (370)
Q Consensus 194 ~~~a~~~i~~~i~~~~ 209 (370)
++++...+..++-...
T Consensus 274 ~avavl~~~ypvgh~~ 289 (345)
T PF07260_consen 274 EAVAVLTATYPVGHMP 289 (345)
T ss_pred hhhhhhccccCCCcCc
Confidence 5666655555544333
No 43
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=97.51 E-value=0.003 Score=60.16 Aligned_cols=132 Identities=14% Similarity=0.075 Sum_probs=105.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHHHHHHHhccCCCc-
Q 017516 16 RKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFKDTK- 94 (370)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 94 (370)
++..+.+...+.+...+|++...+.-..++.++++++++.- ..+.+.+.++..+..+|+.+++.+..++.++....+
T Consensus 339 ~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w--~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~ 416 (549)
T PF04506_consen 339 KQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRW--SSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQ 416 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcc--cCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHH
Confidence 44666777888888888888888778888888988876543 234467888899999999999999999999887654
Q ss_pred --hhHHHHHHHHHHHHHhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 017516 95 --TPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDL 150 (370)
Q Consensus 95 --~~~~~~~~~~~~ni~l~~~~i~~~~~g~~g~alat~i~~~~~~~~~~~~~~~~~~~ 150 (370)
.......+..++-+..++++... ++|..|..+|+.+...+-...+..++++..+.
T Consensus 417 l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~~ 473 (549)
T PF04506_consen 417 LDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRYFRN 473 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455667777777888888865 79999999999999999999998888775443
No 44
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.035 Score=50.30 Aligned_cols=135 Identities=18% Similarity=0.119 Sum_probs=100.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHHHHHHHhccC
Q 017516 12 ARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLALQGIFRGFK 91 (370)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (370)
.+|.+++..+..+.+.+....|++........++.++.+.+++.- ....+...+++.+...|+.+++.+..+++++..
T Consensus 315 qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kw--ss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~ 392 (530)
T KOG2864|consen 315 QENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKW--SSGGGSLLLSWYCLYIPFLAINGITEAFAFAVA 392 (530)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccc--cCCCchHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 444555666777777888888877777777778888888887653 234466889999999999999999999999876
Q ss_pred CCch---hHHHHHHHHHHHHHhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 017516 92 DTKT---PFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEVDL 150 (370)
Q Consensus 92 ~~~~---~~~~~~~~~~~ni~l~~~~i~~~~~g~~g~alat~i~~~~~~~~~~~~~~~~~~~ 150 (370)
..+. .-....+.++.-.+.++++.-. +|..|..+|+.+...+-.+....++++..++
T Consensus 393 t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~yr~ 452 (530)
T KOG2864|consen 393 TSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHYYRD 452 (530)
T ss_pred cHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5332 2344556666677778888754 5669999999999888888887776665443
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=94.47 E-value=3.5 Score=36.99 Aligned_cols=274 Identities=11% Similarity=0.009 Sum_probs=151.7
Q ss_pred HHHhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017516 69 LRSLGAPAVLLSLALQGIFRGFKDTKTPFYATILGDLANVILDPIFIFLFNWGVSGAAIAHVISQYLISLILLWKLIEEV 148 (370)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~~~~g~~g~alat~i~~~~~~~~~~~~~~~~~ 148 (370)
........+...-+...++.+.++.+.....-.++.++..++..++- +.+..|..++..+|..+.......+..+..
T Consensus 136 l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~f 212 (467)
T COG4267 136 LACALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYF 212 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 34444455555666677888888989888888888888888776664 468999999999999998888888877643
Q ss_pred cC-CCCCcchhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhc--ChHHHH------HHHHHHHHHHHHHHhHH-----
Q 017516 149 DL-LPPSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQ--GSTSMA------AFQVCLQIWLATSLLAD----- 214 (370)
Q Consensus 149 ~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--g~~~~a------~~~i~~~i~~~~~~~~~----- 214 (370)
+. .+..+|..+.+ +-=...++......++--+|+++.=.- |.+-.+ -|.+..-...+...|..
T Consensus 213 k~~~~i~FdFL~~~---~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i 289 (467)
T COG4267 213 KSSRRIGFDFLLYR---RKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLI 289 (467)
T ss_pred ccccccceehhhhh---hcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeee
Confidence 32 12223322211 111223344455555555555432111 111111 12222222222222221
Q ss_pred HHHHHHHHHHHH----Hhhc-------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHH
Q 017516 215 GLAVAAQTILAS----AFVK-------KDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGI 283 (370)
Q Consensus 215 ~~~~~~~~~~s~----~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l 283 (370)
.+-+...+..-+ -.|. ++.++.....++...-..-+-...++.+.++++.+...++-++.. .+.+
T Consensus 290 ~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~----l~lF 365 (467)
T COG4267 290 SLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYY----LDLF 365 (467)
T ss_pred eeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH----HHHH
Confidence 112222222211 1122 234445555666666666677788888999999998888755542 4445
Q ss_pred HHHHHHhhhHHHHHHHHhhhhhcCchhhhHHHHHHHHHHHHHHHHHhh---hccCchhHHHHHHHHHHHHHH
Q 017516 284 PFIAVTQPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILS---SSHGYVGIWVALSMYMSLRAI 352 (370)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~~~~~l~---~~~g~~G~~~a~~~~~~~~~~ 352 (370)
.+-.++.-.+..-..+-.+.--..+.+.....+..-...|-.+.++.. |.+--.|...|..++..+...
T Consensus 366 ~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv~~~ 437 (467)
T COG4267 366 YVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLVAFK 437 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHHHHh
Confidence 555554444444444434444444555555555555556666666543 555566666666666555433
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=82.37 E-value=38 Score=30.70 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=89.9
Q ss_pred HHhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHH
Q 017516 210 SLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVT 289 (370)
Q Consensus 210 ~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~ 289 (370)
..+..+++...+-.+|+.+=++|.++....+--+.......+..++..+ .+.+|+. ...+-...+..
T Consensus 74 ~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~v---------f~~~~~~----si~yk~l~~~~ 140 (467)
T COG4267 74 QIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIV---------FFVNNQY----SIVYKILACAL 140 (467)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh---------hhhcCch----hHHHHHHHHHH
Confidence 3456677777778888888888888877766555444444444333211 1122222 12223334455
Q ss_pred hhhHHHHHHHHhhhhhcCchhhhHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHh
Q 017516 290 QPINALAFVFDGINFGASDFAYSAYSMVSVAVVSILCLFILSSSHGYVGIWVALSMYMSLRAIAGFLRIG 359 (370)
Q Consensus 290 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~~~~~l~~~~g~~G~~~a~~~~~~~~~~~~~~~~~ 359 (370)
.+..+..++....+.+..|.|....+...+.++++.+...+ .+.+.+|...+..++..+.......+..
T Consensus 141 FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~-~~~~ie~lLL~~~IGi~~i~~l~~~~Il 209 (467)
T COG4267 141 FVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLF-LKSPIEGLLLTLDIGIFIILFLLNFYIL 209 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66777778888899999999999999998888887776554 3558999999999998776665554443
No 47
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=52.70 E-value=73 Score=21.83 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHH
Q 017516 217 AVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLV 253 (370)
Q Consensus 217 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 253 (370)
+..-...+-+.+.+||++++++..+++.+++.+-.+.
T Consensus 37 Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 37 AIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3344456777888999999999988888777544433
No 48
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=47.43 E-value=1.6e+02 Score=24.27 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=44.4
Q ss_pred HHhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHH
Q 017516 210 SLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIP 284 (370)
Q Consensus 210 ~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 284 (370)
+.+.+.+++. |..-..-++.+.++-|+..++... .+........++++.+.++|+=+-+..+.+...+.
T Consensus 12 f~iinP~g~i--p~f~~lt~~~~~~~r~~ia~~a~~----~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL 80 (203)
T PF01914_consen 12 FAIINPIGNI--PIFLSLTKGMSPKERRRIARRASI----IAFIILLIFAFFGQLILNFFGISLPAFRIAGGIIL 80 (203)
T ss_pred HHHHhHHHHH--HHHHHHhCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444555554 666666666667777777666644 44455556678889999988866666666665554
No 49
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=44.62 E-value=32 Score=29.65 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=18.5
Q ss_pred CchhHHHHHHHHHHHHHH-HHHHHHhcCCCCCCC
Q 017516 335 GYVGIWVALSMYMSLRAI-AGFLRIGSGSGPWSF 367 (370)
Q Consensus 335 g~~G~~~a~~~~~~~~~~-~~~~~~~~~~~~w~~ 367 (370)
...|++.-..+--.+..+ +..|.++||++.||+
T Consensus 259 ~Pcgiaalvllil~vvliiLYiWlyrrRK~swkh 292 (295)
T TIGR01478 259 LPYGIAALVLIILTVVLIILYIWLYRRRKKSWKH 292 (295)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 445555444444444444 444566677888975
No 50
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=42.36 E-value=3.1e+02 Score=26.09 Aligned_cols=55 Identities=13% Similarity=0.234 Sum_probs=27.4
Q ss_pred ccCCCchhHHHHHHHHHHHHHhhHHHHhh----h----ccchHHHHHHHHHHHHHHHHHHHHH
Q 017516 89 GFKDTKTPFYATILGDLANVILDPIFIFL----F----NWGVSGAAIAHVISQYLISLILLWK 143 (370)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~ni~l~~~~i~~----~----~~g~~g~alat~i~~~~~~~~~~~~ 143 (370)
-+||.+...+-+..+.+-+.+...++... . +.|..+.++-..+.-.+..+++..-
T Consensus 144 ~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~ 206 (467)
T COG2211 144 PQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFN 206 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665554444221 1 3355555544444444444444333
No 51
>PRK10739 putative antibiotic transporter; Provisional
Probab=39.85 E-value=2.1e+02 Score=23.48 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=45.7
Q ss_pred HHhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHH
Q 017516 210 SLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIP 284 (370)
Q Consensus 210 ~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 284 (370)
+.+.+.+++. |.+-....+.++++-++..++....+. ...++..+.++.+.++|+=+-+..+.+...+.
T Consensus 12 f~iinPig~i--piflslt~~~~~~~r~~ia~~a~~~a~----~ill~f~~~G~~iL~~fGIsl~afrIAGGilL 80 (197)
T PRK10739 12 ILIMDPLGNL--PIFMSVLKHLEPKRRRAIMIRELLIAL----LVMLVFLFAGEKILAFLNLRTETVSISGGIIL 80 (197)
T ss_pred HHHHhHhhHH--HHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3345555554 776666666777777777776654443 44456778889999999877666666665554
No 52
>PTZ00370 STEVOR; Provisional
Probab=39.46 E-value=34 Score=29.57 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=18.6
Q ss_pred cCchhHHHHHHHHHHHHHH-HHHHHHhcCCCCCCC
Q 017516 334 HGYVGIWVALSMYMSLRAI-AGFLRIGSGSGPWSF 367 (370)
Q Consensus 334 ~g~~G~~~a~~~~~~~~~~-~~~~~~~~~~~~w~~ 367 (370)
++..|++.-..+--.+..+ +..|.++||++.||+
T Consensus 254 F~Pygiaalvllil~vvliilYiwlyrrRK~swkh 288 (296)
T PTZ00370 254 FYPYGIAALVLLILAVVLIILYIWLYRRRKNSWKH 288 (296)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Confidence 3445555444444444434 444566677888975
No 53
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=39.02 E-value=1.6e+02 Score=24.67 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=32.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCc-------cchhhHHHHHHHHHhhHHHHH
Q 017516 14 HERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDS-------PMIKPAQQYLTLRSLGAPAVL 78 (370)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~y~~~~~~~~~~~~ 78 (370)
+++...+.+..++...+.+-.++++ +..+..++..+++.+.-. +-.+-...|+++++.++|-..
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~l-vmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFAL-VMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH-HHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 3444444455555544444333333 455566777777644200 011225677777777777655
No 54
>PRK10995 inner membrane protein; Provisional
Probab=34.44 E-value=2.8e+02 Score=23.23 Aligned_cols=69 Identities=12% Similarity=0.022 Sum_probs=44.1
Q ss_pred HHhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHH
Q 017516 210 SLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIP 284 (370)
Q Consensus 210 ~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 284 (370)
+.+.+.+++. |.+-..-.+.++++-++..++.... +..+.++..+.++.+.+.|.-+.+..+.+...+.
T Consensus 16 f~iinP~g~~--pif~~lt~~~~~~~r~~ia~~~~~~----a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL 84 (221)
T PRK10995 16 LPLANPLTTV--ALFLGLSGNMTPEERNRQALMASVY----VFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIV 84 (221)
T ss_pred HHHhchhhhH--HHHHHHhCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344555554 6666666666777777777766444 4444556677888889988876666666555543
No 55
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=32.79 E-value=4e+02 Score=24.54 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=28.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhh
Q 017516 14 HERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNY 50 (370)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 50 (370)
++++.+++++.+...+.....+...+.....-|+...
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~ 125 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQ 125 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999988888777777666666663
No 56
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=32.58 E-value=2.8e+02 Score=22.80 Aligned_cols=69 Identities=13% Similarity=0.070 Sum_probs=45.4
Q ss_pred HHhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHH
Q 017516 210 SLLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIP 284 (370)
Q Consensus 210 ~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 284 (370)
+.+.+.+++. |..-...++.+.++-++..++.... +....+.+.+.++.+.++|+=+-+..+.+...+.
T Consensus 15 f~iinPig~i--pvfl~lt~~~~~~~r~~ia~~~~l~----a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL 83 (201)
T TIGR00427 15 FAIINPIGNI--PIFISLTEYYTAAERNKIAKKANIS----SFIILLIFLVFGDTILKLFGISIDAFRIAGGILL 83 (201)
T ss_pred HHHhCcchHH--HHHHHHhCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3445555555 7777776677777777777766444 4444556778888999999866665666665554
No 57
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=31.95 E-value=2.4e+02 Score=21.69 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=14.5
Q ss_pred hHHHHHhhcHHHHHHHHHHHHHHHH
Q 017516 159 KFGQFLKNGFLLMVRVIAVTFCVTL 183 (370)
Q Consensus 159 ~~~~~~~~~~p~~~~~~~~~~~~~~ 183 (370)
+.++-+|.+.-.+.......+....
T Consensus 102 ~~~~A~~~~~ga~~g~~~g~~~k~~ 126 (140)
T PF04306_consen 102 DFRRALRAGIGALVGFLAGTLIKLV 126 (140)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666665555554443
No 58
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=29.67 E-value=4.8e+02 Score=24.57 Aligned_cols=71 Identities=14% Similarity=0.250 Sum_probs=53.8
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHhc-C-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCHHHHHHHHHH
Q 017516 165 KNGFLLMVRVIAVTFCVTLAASLAARQ-G-STSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKATTIASH 242 (370)
Q Consensus 165 ~~~~p~~~~~~~~~~~~~~~~~~~~~~-g-~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~ 242 (370)
|.+.|..++-+..-++.....++.+.. | +++++ -+.-....|+|+.+...+++.+|+.+-.+-+|...-
T Consensus 377 RDsGpLIiSh~yLLiGcslPIWms~~p~~~~ral~---------~laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEG 447 (510)
T KOG2468|consen 377 RDSGPLIISHFYLLIGCSLPIWMSNSPCGGDRALA---------LLAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEG 447 (510)
T ss_pred ccCCceeHHHHHHHHhcccchhccCCCCCchhhhh---------hhhhheeeccchHHHHHHhhhhcceecCCCcceeeh
Confidence 448898888888888888877777776 3 33333 344556789999999999999999988888777665
Q ss_pred HH
Q 017516 243 VL 244 (370)
Q Consensus 243 ~~ 244 (370)
..
T Consensus 448 T~ 449 (510)
T KOG2468|consen 448 TL 449 (510)
T ss_pred hh
Confidence 53
No 59
>PF13347 MFS_2: MFS/sugar transport protein
Probab=29.05 E-value=4.7e+02 Score=24.18 Aligned_cols=21 Identities=5% Similarity=-0.088 Sum_probs=11.0
Q ss_pred HhhhhhcCchhhhHHHHHHHH
Q 017516 300 DGINFGASDFAYSAYSMVSVA 320 (370)
Q Consensus 300 ~~~l~~~g~~~~~~~~~~~~~ 320 (370)
..+.+-.|+.|..........
T Consensus 281 ~~l~~r~gk~~~~~~~~~~~~ 301 (428)
T PF13347_consen 281 GRLSKRFGKKKVYIIGLLLAA 301 (428)
T ss_pred HHHHHHccceeehhhhHHHHH
Confidence 444555577665554444433
No 60
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=27.76 E-value=4.8e+02 Score=23.97 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=30.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 017516 231 KDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSR 267 (370)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 267 (370)
.+.++.+++.+++...+.+.......+.....-|+..
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999998888888777777665
No 61
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.73 E-value=1.5e+02 Score=22.23 Aligned_cols=10 Identities=10% Similarity=0.142 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 017516 124 GAAIAHVISQ 133 (370)
Q Consensus 124 g~alat~i~~ 133 (370)
|..++...|-
T Consensus 68 ~Ii~gv~aGv 77 (122)
T PF01102_consen 68 GIIFGVMAGV 77 (122)
T ss_dssp HHHHHHHHHH
T ss_pred ehhHHHHHHH
Confidence 3333333333
No 62
>PRK11111 hypothetical protein; Provisional
Probab=25.27 E-value=4e+02 Score=22.20 Aligned_cols=68 Identities=10% Similarity=0.062 Sum_probs=42.5
Q ss_pred HhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHH
Q 017516 211 LLADGLAVAAQTILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIP 284 (370)
Q Consensus 211 ~~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 284 (370)
.+.+.+++. |..-..-.+.+.++-++..++.... +.....+..+.++++.++|+=+-+..+.+...+.
T Consensus 19 ~iinPig~i--piflslt~~~s~~~r~~ia~~a~l~----a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL 86 (214)
T PRK11111 19 ALVNPVGIL--PVFISMTSHQTAAERNKTNLTANLS----VAIILLISLFLGDFILNLFGISIDSFRIAGGILV 86 (214)
T ss_pred HHhCcchhH--HHHHHHhCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 334455444 6665555556667777666655433 4444456678889999988866666666665554
No 63
>PRK13852 type IV secretion system protein VirB6; Provisional
Probab=22.82 E-value=5.4e+02 Score=22.77 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=22.5
Q ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017516 222 TILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVN 257 (370)
Q Consensus 222 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (370)
...+...-+|+.| .++..+++.+++++.++.....
T Consensus 48 il~Gy~I~rG~vd-~~efi~R~ikiaIIvalAl~ag 82 (295)
T PRK13852 48 IVQGILVMRGELD-ARGGITRVITVSIVVALIVGQA 82 (295)
T ss_pred HHHHHHHHhCCch-hHHHHHHHHHHHHHHHHHHhHH
Confidence 3445555445444 4566778888888887777664
No 64
>PF11070 DUF2871: Protein of unknown function (DUF2871); InterPro: IPR021299 This family of proteins has no known function.
Probab=22.19 E-value=3.5e+02 Score=20.60 Aligned_cols=30 Identities=10% Similarity=0.279 Sum_probs=17.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhccCCCc
Q 017516 65 QYLTLRSLGAPAVLLSLALQGIFRGFKDTK 94 (370)
Q Consensus 65 ~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (370)
.+..+.=++++........++..|..|...
T Consensus 72 ~f~~~YniGl~~t~~mm~vrGi~qV~g~~~ 101 (132)
T PF11070_consen 72 KFFIVYNIGLVLTVGMMLVRGILQVLGSEL 101 (132)
T ss_pred eEEEEEehhHHHHHHHHHHHHHHHHcCCCC
Confidence 444445555566666666666666665554
No 65
>COG1987 FliQ Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.99 E-value=3e+02 Score=19.22 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHH
Q 017516 233 YDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIP 284 (370)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 284 (370)
.+.+-+..+.+++..+.++.|..+...+- ..++.+|-...++.|+...+++
T Consensus 3 ~~~~l~i~~~ai~~~L~l~~P~ll~alvv-GLvIsifQA~TQIqEqTLsFiP 53 (89)
T COG1987 3 EEDVLDIGQEAIWLVLMLSAPVLLVALVV-GLVISIFQAATQIQEQTLSFIP 53 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHH
Confidence 45667778888888888888887765544 4666777555555565655554
No 66
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.74 E-value=1.1e+02 Score=22.80 Aligned_cols=15 Identities=13% Similarity=0.014 Sum_probs=7.1
Q ss_pred chhHHHHHHHHHHHH
Q 017516 336 YVGIWVALSMYMSLR 350 (370)
Q Consensus 336 ~~G~~~a~~~~~~~~ 350 (370)
+.|+.+|.+++-+..
T Consensus 66 i~~Ii~gv~aGvIg~ 80 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGI 80 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHH
Confidence 344455555555433
Done!