Query 017516
Match_columns 370
No_of_seqs 209 out of 1934
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 15:41:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 4.9E-43 1.7E-47 327.7 31.6 356 3-361 72-446 (460)
2 3mkt_A Multi antimicrobial ext 99.9 2.8E-20 9.6E-25 173.5 19.6 204 157-361 8-217 (460)
3 1pw4_A Glycerol-3-phosphate tr 50.7 1.3E+02 0.0044 26.3 20.6 25 331-355 407-431 (451)
4 2k1k_A Ephrin type-A receptor 25.7 86 0.0029 17.1 3.1 14 122-135 13-26 (38)
5 4aps_A DI-OR tripeptide H+ sym 16.9 5.3E+02 0.018 22.6 21.8 10 222-231 340-349 (491)
6 1nkz_B Light-harvesting protei 10.7 2.5E+02 0.0086 15.6 3.5 34 232-265 7-40 (41)
7 2jwa_A Receptor tyrosine-prote 9.7 2.9E+02 0.0099 15.6 4.6 10 138-147 29-38 (44)
8 1lgh_B LH II, B800/850, light 9.1 3.1E+02 0.011 15.6 3.2 33 232-264 12-44 (45)
9 2kog_A Vesicle-associated memb 8.2 5.2E+02 0.018 18.1 4.3 32 7-38 77-108 (119)
10 1ug2_A 2610100B20RIK gene prod 7.9 2.7E+02 0.0092 18.6 2.4 27 2-28 57-83 (95)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=4.9e-43 Score=327.75 Aligned_cols=356 Identities=20% Similarity=0.212 Sum_probs=325.9
Q ss_pred hhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCCccchhhHHHHHHHHHhhHHHHHHHHH
Q 017516 3 LNNISAKVEARHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSDSPMIKPAQQYLTLRSLGAPAVLLSLA 82 (370)
Q Consensus 3 ~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 82 (370)
.+.++|+.|++|+++.++.+++++.+..+.+++..++ ..+.+++...++.+++ ..+.+..|++++.++.++..+...
T Consensus 72 ~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~~~~~ 148 (460)
T 3mkt_A 72 VPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEA--MATKTVGYMHAVIFAVPAYLLFQA 148 (460)
T ss_dssp GGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTH--HHHHHHHHHTTGGGHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999887764 7788999998876655 788899999999999999999999
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHhhHHHHhh----hccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC------
Q 017516 83 LQGIFRGFKDTKTPFYATILGDLANVILDPIFIFL----FNWGVSGAAIAHVISQYLISLILLWKLIEEVDLLP------ 152 (370)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~~ni~l~~~~i~~----~~~g~~g~alat~i~~~~~~~~~~~~~~~~~~~~~------ 152 (370)
.++++|++||++.++..++++.++|+++++++++. |++|+.|+++++.+++.+..++...+.+++++..+
T Consensus 149 ~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (460)
T 3mkt_A 149 LRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFET 228 (460)
T ss_dssp HTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCC
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhc
Confidence 99999999999999999999999999999999975 48999999999999999999988888776543221
Q ss_pred -CCcchhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc
Q 017516 153 -PSSKDLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKK 231 (370)
Q Consensus 153 -~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~ 231 (370)
.+.++..+|++++.+.|.+++++...+...+++.+++++|++++++|+++.++.++...+..+++++..|.+++++|+|
T Consensus 229 ~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~ 308 (460)
T 3mkt_A 229 FHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQ 308 (460)
T ss_dssp CCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1344556799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhh
Q 017516 232 DYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAY 311 (370)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 311 (370)
|++++++..+++.+....++++.++++.++++++..+|++|+++.+.+..++++++++.++++++....+++++.||+|.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 388 (460)
T 3mkt_A 309 DTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTA 388 (460)
T ss_dssp CCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred hHHHHHHHH-HHHHHHHHHhhhc-------cCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 017516 312 SAYSMVSVA-VVSILCLFILSSS-------HGYVGIWVALSMYMSLRAIAGFLRIGSG 361 (370)
Q Consensus 312 ~~~~~~~~~-~~~i~~~~~l~~~-------~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 361 (370)
+++..+... ++++|+++++.+. +|..|+|+++.+++.+..+...++++++
T Consensus 389 ~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 389 IFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999776654 9999999999887 9999999999999999988877766543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.85 E-value=2.8e-20 Score=173.47 Aligned_cols=204 Identities=16% Similarity=0.110 Sum_probs=189.3
Q ss_pred hhhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccCHHHH
Q 017516 157 DLKFGQFLKNGFLLMVRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLATSLLADGLAVAAQTILASAFVKKDYDKA 236 (370)
Q Consensus 157 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~s~~~g~~~~~~~ 236 (370)
+...|++++.++|.++.++...+...+|+.+++++|++++++++++.++..+...+..+++.+..|.+++++|++|+++.
T Consensus 8 ~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~ 87 (460)
T 3mkt_A 8 KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGRQHKI 87 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSSTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Confidence 34678999999999999999999999999999999999999999999998888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCHHHHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhcCchhhhHHHH
Q 017516 237 TTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFTKDLKVLQLIGVGIPFIAVTQPINALAFVFDGINFGASDFAYSAYSM 316 (370)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 316 (370)
++..+++.....+.+++.+++ ..+++++..++..|++..+.+..++++.+++.++..+.....+.+++.||++.++...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 166 (460)
T 3mkt_A 88 PFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIG 166 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 999999999999999998775 7888999999988888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh------ccCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 017516 317 VSVAVVSILCLFILSS------SHGYVGIWVALSMYMSLRAIAGFLRIGSG 361 (370)
Q Consensus 317 ~~~~~~~i~~~~~l~~------~~g~~G~~~a~~~~~~~~~~~~~~~~~~~ 361 (370)
+...+++++++++++. ++|+.|+++++.+++.+..+...++++++
T Consensus 167 ~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 217 (460)
T 3mkt_A 167 FIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS 217 (460)
T ss_dssp HHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999875 59999999999999999988877766543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=50.67 E-value=1.3e+02 Score=26.35 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=13.7
Q ss_pred hhccCchhHHHHHHHHHHHHHHHHH
Q 017516 331 SSSHGYVGIWVALSMYMSLRAIAGF 355 (370)
Q Consensus 331 ~~~~g~~G~~~a~~~~~~~~~~~~~ 355 (370)
....|....++...+..++..+...
T Consensus 407 ~~~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 407 VDFFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 4556766666655555555444443
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=25.70 E-value=86 Score=17.07 Aligned_cols=14 Identities=7% Similarity=0.195 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHH
Q 017516 122 VSGAAIAHVISQYL 135 (370)
Q Consensus 122 ~~g~alat~i~~~~ 135 (370)
+.|..++.+.+-.+
T Consensus 13 IAGiVvG~v~gv~l 26 (38)
T 2k1k_A 13 IVAVIFGLLLGAAL 26 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHH
Confidence 34444554444433
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=16.93 E-value=5.3e+02 Score=22.63 Aligned_cols=10 Identities=30% Similarity=0.302 Sum_probs=4.8
Q ss_pred HHHHHHhhcc
Q 017516 222 TILASAFVKK 231 (370)
Q Consensus 222 ~~~s~~~g~~ 231 (370)
..+.+.+|++
T Consensus 340 ~~l~~r~~~r 349 (491)
T 4aps_A 340 AWLWTAWKKN 349 (491)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHHhcc
Confidence 3445555544
No 6
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=10.70 E-value=2.5e+02 Score=15.58 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017516 232 DYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFS 265 (370)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 265 (370)
+-+++.+.+.+++..-..++++.=++.+...|++
T Consensus 7 EA~EfH~~~~~~~~~F~~iA~vAH~l~w~wrPWl 40 (41)
T 1nkz_B 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4566777777777777777777666666666553
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=9.72 E-value=2.9e+02 Score=15.61 Aligned_cols=10 Identities=0% Similarity=0.006 Sum_probs=4.1
Q ss_pred HHHHHHHHhh
Q 017516 138 LILLWKLIEE 147 (370)
Q Consensus 138 ~~~~~~~~~~ 147 (370)
+....+++|+
T Consensus 29 l~~~~~~RRR 38 (44)
T 2jwa_A 29 VVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhheehh
Confidence 3333444443
No 8
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=9.08 E-value=3.1e+02 Score=15.55 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017516 232 DYDKATTIASHVLQLSVVLGLVLTVNLLVGLPF 264 (370)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (370)
+-+++.+.+.+++..-..++++.=++.+...|+
T Consensus 12 EA~EfH~~~~~~~~~F~~iA~vAH~L~~~wrPW 44 (45)
T 1lgh_B 12 EAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 44 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345666677777766666666665655555443
No 9
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=8.20 E-value=5.2e+02 Score=18.13 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=15.6
Q ss_pred hHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 017516 7 SAKVEARHERKHIPSASSALVIGSVLGLIQAF 38 (370)
Q Consensus 7 s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (370)
|+.+.++.++..++.++.-..+.+++++++.+
T Consensus 77 S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~i 108 (119)
T 2kog_A 77 ASQFETSAAKLKRKYWWKNLKMMIILGVICAI 108 (119)
T ss_dssp SHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555555555554444444433
No 10
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=7.92 E-value=2.7e+02 Score=18.64 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=0.0
Q ss_pred chhhhhHHhhhhhhhhhhhhHHHHHHH
Q 017516 2 TLNNISAKVEARHERKHIPSASSALVI 28 (370)
Q Consensus 2 ~~~~~s~~~g~~~~~~~~~~~~~~~~~ 28 (370)
|+..+++.++.+..++.++-|+..+-+
T Consensus 57 tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 57 TFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp THHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHH
Done!