Query 017516
Match_columns 370
No_of_seqs 209 out of 1934
Neff 10.6
Searched_HMMs 13730
Date Mon Mar 25 15:41:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017516.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017516hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lghb_ f.3.1.1 (B:) Light-har 12.1 1.1E+02 0.0078 15.9 3.2 33 232-264 10-42 (43)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 11.2 3.3E+02 0.024 21.1 23.0 29 330-358 403-431 (447)
3 d3dhwa1 f.58.1.1 (A:6-208) D-m 9.1 2.9E+02 0.021 19.1 11.0 49 222-270 115-163 (203)
4 d2fyuk1 f.23.15.1 (K:1-53) Sub 8.6 1.7E+02 0.012 15.9 3.4 28 6-33 2-29 (53)
5 d1nkzb_ f.3.1.1 (B:) Light-har 7.8 1.6E+02 0.011 14.9 3.7 33 232-264 7-39 (41)
6 d1jo5a_ f.3.1.1 (A:) Light-har 6.5 1.9E+02 0.014 15.3 2.4 33 232-264 15-47 (48)
7 d2iuba2 f.17.3.1 (A:286-349) M 6.1 2.4E+02 0.018 15.5 4.6 11 320-330 13-23 (64)
8 d1m56d_ f.23.8.1 (D:) Bacteria 4.6 2.7E+02 0.019 14.2 3.8 13 229-241 5-17 (42)
9 d1ug2a_ a.4.1.3 (A:) 2610100b2 3.6 3.3E+02 0.024 16.7 2.4 25 2-26 57-81 (95)
10 d2d5ba1 a.27.1.1 (A:349-500) M 3.4 4.4E+02 0.032 17.2 3.4 44 13-56 81-124 (152)
No 1
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=12.05 E-value=1.1e+02 Score=15.92 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017516 232 DYDKATTIASHVLQLSVVLGLVLTVNLLVGLPF 264 (370)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (370)
+-++..+.+.+++..-..++++.=++.+...|+
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 446677777777776666666666666555543
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=11.25 E-value=3.3e+02 Score=21.13 Aligned_cols=29 Identities=14% Similarity=0.071 Sum_probs=16.1
Q ss_pred hhhccCchhHHHHHHHHHHHHHHHHHHHH
Q 017516 330 LSSSHGYVGIWVALSMYMSLRAIAGFLRI 358 (370)
Q Consensus 330 l~~~~g~~G~~~a~~~~~~~~~~~~~~~~ 358 (370)
+....|..+..+......++..+......
T Consensus 403 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 403 TVDFFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777766655555555544444333
No 3
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=9.13 E-value=2.9e+02 Score=19.10 Aligned_cols=49 Identities=12% Similarity=-0.003 Sum_probs=30.7
Q ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Q 017516 222 TILASAFVKKDYDKATTIASHVLQLSVVLGLVLTVNLLVGLPFSSRLFT 270 (370)
Q Consensus 222 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 270 (370)
...++..|.++.+..++..--...-....+........+-...+....+
T Consensus 115 ~Eaa~~lGas~~q~~~~vilP~~~p~i~~~~~~~~~~~i~~~~~~~~ig 163 (203)
T d3dhwa1 115 IEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVG 163 (203)
T ss_dssp TTHHHHHTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHcCCchhhhhHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888877666666666666655555443333344443
No 4
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.62 E-value=1.7e+02 Score=15.88 Aligned_cols=28 Identities=14% Similarity=0.075 Sum_probs=21.5
Q ss_pred hhHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 017516 6 ISAKVEARHERKHIPSASSALVIGSVLG 33 (370)
Q Consensus 6 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~ 33 (370)
+++..|.+..+.++....+....+...+
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~g 29 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVGA 29 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhhh
Confidence 5778888888888888888777765544
No 5
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=7.84 E-value=1.6e+02 Score=14.86 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017516 232 DYDKATTIASHVLQLSVVLGLVLTVNLLVGLPF 264 (370)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (370)
+.++..+..-.+.+.-..++++.=++.+...||
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPW 39 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPW 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCcc
Confidence 346677777777777777777766666666554
No 6
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.51 E-value=1.9e+02 Score=15.33 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017516 232 DYDKATTIASHVLQLSVVLGLVLTVNLLVGLPF 264 (370)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (370)
+-++..+.+..++..-..++++.=++.+...|+
T Consensus 15 EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrPW 47 (48)
T d1jo5a_ 15 QAQELHSVYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345666667777666666666666666655544
No 7
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=6.12 E-value=2.4e+02 Score=15.52 Aligned_cols=11 Identities=27% Similarity=0.301 Sum_probs=5.4
Q ss_pred HHHHHHHHHHh
Q 017516 320 AVVSILCLFIL 330 (370)
Q Consensus 320 ~~~~i~~~~~l 330 (370)
..+.+|+.++-
T Consensus 13 t~iflP~t~i~ 23 (64)
T d2iuba2 13 ATIFMPLTFIA 23 (64)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 33445665553
No 8
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.62 E-value=2.7e+02 Score=14.17 Aligned_cols=13 Identities=8% Similarity=-0.026 Sum_probs=5.4
Q ss_pred hccCHHHHHHHHH
Q 017516 229 VKKDYDKATTIAS 241 (370)
Q Consensus 229 g~~~~~~~~~~~~ 241 (370)
|+=|.+.-.+.+.
T Consensus 5 G~MDi~vQEKTF~ 17 (42)
T d1m56d_ 5 GSMDITQQEKTFA 17 (42)
T ss_dssp TCSCCHHHHHHHH
T ss_pred CccchHHHHHHHH
Confidence 4444444444333
No 9
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.56 E-value=3.3e+02 Score=16.75 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=17.2
Q ss_pred chhhhhHHhhhhhhhhhhhhHHHHH
Q 017516 2 TLNNISAKVEARHERKHIPSASSAL 26 (370)
Q Consensus 2 ~~~~~s~~~g~~~~~~~~~~~~~~~ 26 (370)
|.+.+++.++.+..++++.-+...+
T Consensus 57 tw~~Ia~~L~~Rs~~qvr~Rf~~Lm 81 (95)
T d1ug2a_ 57 TFSVISQQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp THHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 5678888887666666766665444
No 10
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=3.40 E-value=4.4e+02 Score=17.21 Aligned_cols=44 Identities=2% Similarity=-0.018 Sum_probs=22.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHhhcCCCCC
Q 017516 13 RHERKHIPSASSALVIGSVLGLIQAFFVIAYAKPILNYMGVNSD 56 (370)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 56 (370)
+|.++++..+..++-..-.+++.+..+.=-.++-+...+|.+++
T Consensus 81 ~d~~~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ki~~~Lg~~~~ 124 (152)
T d2d5ba1 81 KEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKEE 124 (152)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCSS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCcc
Confidence 34455555555444433334444333333345567777876654
Done!