Query 017517
Match_columns 370
No_of_seqs 156 out of 757
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 09:17:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1724 SCF ubiquitin ligase, 100.0 2.7E-42 5.8E-47 310.2 14.9 146 13-160 2-156 (162)
2 COG5201 SKP1 SCF ubiquitin lig 100.0 6.3E-36 1.4E-40 260.0 12.7 141 16-160 2-151 (158)
3 smart00512 Skp1 Found in Skp1 99.9 3.7E-25 8.1E-30 183.5 10.5 100 16-116 2-104 (104)
4 PF01466 Skp1: Skp1 family, di 99.9 7.4E-23 1.6E-27 163.1 4.5 72 89-160 1-72 (78)
5 PF03931 Skp1_POZ: Skp1 family 99.7 1.5E-16 3.3E-21 121.6 5.9 60 17-80 2-61 (62)
6 KOG3473 RNA polymerase II tran 99.4 1E-12 2.2E-17 110.3 7.0 98 13-116 14-112 (112)
7 PF00651 BTB: BTB/POZ domain; 97.9 5.1E-05 1.1E-09 61.3 8.1 99 15-129 10-109 (111)
8 PHA02713 hypothetical protein; 97.7 0.0002 4.4E-09 75.6 9.6 107 15-141 25-133 (557)
9 smart00225 BTB Broad-Complex, 97.4 0.00034 7.4E-09 52.7 5.8 85 22-124 5-90 (90)
10 PHA03098 kelch-like protein; P 97.1 0.003 6.5E-08 65.3 9.9 98 16-135 10-109 (534)
11 PHA02790 Kelch-like protein; P 96.9 0.0021 4.6E-08 66.5 6.7 98 17-132 22-121 (480)
12 KOG4441 Proteins containing BT 96.3 0.0098 2.1E-07 63.5 7.4 94 17-129 38-132 (571)
13 KOG2716 Polymerase delta-inter 88.1 2.3 5E-05 41.2 8.0 102 16-134 5-108 (230)
14 KOG3433 Protein involved in me 81.6 1.4 3.1E-05 41.5 3.3 37 109-150 162-200 (203)
15 COG5124 Protein predicted to b 79.5 1.4 3.1E-05 41.4 2.4 31 115-150 174-204 (209)
16 KOG4682 Uncharacterized conser 72.6 5.9 0.00013 41.6 5.0 113 24-156 77-192 (488)
17 KOG0783 Uncharacterized conser 71.6 4.8 0.0001 45.7 4.3 115 11-141 708-825 (1267)
18 PF02214 BTB_2: BTB/POZ domain 63.7 3.7 7.9E-05 32.9 1.2 83 24-123 6-94 (94)
19 PF07928 Vps54: Vps54-like pro 54.6 4.1 8.9E-05 36.1 0.0 120 24-183 1-125 (135)
20 KOG2002 TPR-containing nuclear 54.4 6.8 0.00015 44.8 1.6 7 203-209 882-888 (1018)
21 PF11822 DUF3342: Domain of un 49.2 31 0.00066 35.1 5.1 89 26-130 14-103 (317)
22 KOG4350 Uncharacterized conser 48.9 77 0.0017 33.9 8.1 146 17-173 46-214 (620)
23 KOG2422 Uncharacterized conser 48.3 13 0.00029 40.7 2.6 40 287-327 150-192 (665)
24 PF03962 Mnd1: Mnd1 family; I 46.6 17 0.00037 33.8 2.8 42 104-150 144-187 (188)
25 PLN03083 E3 UFM1-protein ligas 41.6 13 0.00028 42.0 1.3 29 306-334 511-540 (803)
26 PF14384 DUF4415: Domain of un 40.6 24 0.00051 27.2 2.3 26 307-332 34-59 (62)
27 PF03656 Pam16: Pam16; InterP 31.9 51 0.0011 29.3 3.2 36 130-165 51-88 (127)
28 PRK05365 malonic semialdehyde 29.5 30 0.00064 31.4 1.4 34 106-149 130-163 (195)
29 KOG2422 Uncharacterized conser 28.3 27 0.00059 38.4 1.1 13 142-154 24-36 (665)
30 PF01886 DUF61: Protein of unk 28.1 44 0.00095 29.8 2.2 45 308-354 1-45 (132)
31 PF05553 DUF761: Cotton fibre 27.7 49 0.0011 23.6 2.0 25 306-332 3-27 (38)
32 cd02148 Nitroreductase_5 Nitro 26.2 34 0.00074 30.7 1.2 33 107-149 124-156 (185)
33 PF12112 DUF3579: Protein of u 25.8 37 0.0008 28.7 1.2 14 321-334 23-36 (92)
34 PF09278 MerR-DNA-bind: MerR, 24.5 92 0.002 23.1 3.1 39 132-184 13-51 (65)
35 PF06375 BLVR: Bovine leukaemi 22.6 29 0.00062 31.9 0.0 7 150-156 2-8 (154)
36 KOG0511 Ankyrin repeat protein 22.3 2.3E+02 0.0051 30.1 6.4 108 21-132 296-431 (516)
37 PF11978 MVP_shoulder: Shoulde 20.0 76 0.0016 28.1 2.1 42 107-148 36-90 (118)
No 1
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-42 Score=310.18 Aligned_cols=146 Identities=36% Similarity=0.588 Sum_probs=134.2
Q ss_pred CCCccEEEEeCCCCEEEecHHHHhHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCC--------
Q 017517 13 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS-------- 84 (370)
Q Consensus 13 ~~s~~IkL~SsDG~iF~Vs~eaA~qS~tI~~mL~~~g~~~~~~~~IPLP~nVss~iLkkIIEwCehHk~~~~-------- 84 (370)
|++++|+|+|+||++|+|+.++|++|.+|++++.+.|++... .+|||| +|+|.||++||+||+||+.+++
T Consensus 2 ~~~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~-~~IPl~-nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~ 79 (162)
T KOG1724|consen 2 MSKKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADEN-DPIPLP-NVTSKILKKVIEWCKKHKDDDPANPEDKEL 79 (162)
T ss_pred CCCCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccC-CccccC-ccCHHHHHHHHHHHHHcccccccccccccc
Confidence 667899999999999999999999999999999999986432 699999 7999999999999999998643
Q ss_pred -CchhchhhhhhhccCChhHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 017517 85 -SNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160 (370)
Q Consensus 85 -s~~ei~~WD~eFLk~D~e~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRk~FgI~~D~TpEEEeEi~k~ 160 (370)
....++.||++||++|..+||+||.|||||+|++|+++||++||+||+||||+|||.+|||++|+|+||+.+++++
T Consensus 80 ~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e 156 (162)
T KOG1724|consen 80 PEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKE 156 (162)
T ss_pred cccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhc
Confidence 2234899999999999999999999999999999999999999999999999999999999999999888777665
No 2
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-36 Score=259.98 Aligned_cols=141 Identities=34% Similarity=0.514 Sum_probs=128.5
Q ss_pred ccEEEEeCCCCEEEecHHHHhHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCC---C------c
Q 017517 16 SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS---S------N 86 (370)
Q Consensus 16 ~~IkL~SsDG~iF~Vs~eaA~qS~tI~~mL~~~g~~~~~~~~IPLP~nVss~iLkkIIEwCehHk~~~~---s------~ 86 (370)
+.|.|.|.||++|.|+..+|..|-+|++|+.+.+- .+.|||+| +|.+.+|.+|++||+||..... + .
T Consensus 2 s~i~l~s~dge~F~vd~~iAerSiLikN~l~d~~~---~n~p~p~p-nVrSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 2 SMIELESIDGEIFRVDENIAERSILIKNMLCDSTA---CNYPIPAP-NVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred CceEEEecCCcEEEehHHHHHHHHHHHHHhccccc---cCCCCccc-chhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 57999999999999999999999999998876542 47889999 8999999999999999997421 1 1
Q ss_pred hhchhhhhhhccCChhHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 017517 87 KERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160 (370)
Q Consensus 87 ~ei~~WD~eFLk~D~e~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRk~FgI~~D~TpEEEeEi~k~ 160 (370)
.....||..|+.+|+++|++++.|||||+|++|+++||+.||.+|+||||+|||++|||++||||||++.++++
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeeir~tfni~ndfTpEEe~~irkE 151 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRKE 151 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 24557999999999999999999999999999999999999999999999999999999999999999999886
No 3
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=99.92 E-value=3.7e-25 Score=183.52 Aligned_cols=100 Identities=32% Similarity=0.523 Sum_probs=89.2
Q ss_pred ccEEEEeCCCCEEEecHHHHhHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCc---hhchhh
Q 017517 16 SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSN---KERKSF 92 (370)
Q Consensus 16 ~~IkL~SsDG~iF~Vs~eaA~qS~tI~~mL~~~g~~~~~~~~IPLP~nVss~iLkkIIEwCehHk~~~~s~---~ei~~W 92 (370)
++|+|+|+||++|.|+.++|++|++|++|+.+.|.+.+.+.+|||| +|++.+|++|++||+||+.++... ..+++|
T Consensus 2 ~~v~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~~~~~~Ipl~-~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 2 KYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLP-NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred CeEEEEeCCCCEEEecHHHHHHHHHHHHHHHccCcccCCCCCccCC-CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 5899999999999999999999999999998777654334689999 899999999999999999865432 358999
Q ss_pred hhhhccCChhHHHHHHhhcccCCC
Q 017517 93 DEKFIRMDTKRLCELTSAADSLQL 116 (370)
Q Consensus 93 D~eFLk~D~e~LfeLI~AAnYLdI 116 (370)
|.+|++++.+.||+|+.||+||+|
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999997
No 4
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=99.87 E-value=7.4e-23 Score=163.12 Aligned_cols=72 Identities=40% Similarity=0.658 Sum_probs=62.2
Q ss_pred chhhhhhhccCChhHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 017517 89 RKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160 (370)
Q Consensus 89 i~~WD~eFLk~D~e~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRk~FgI~~D~TpEEEeEi~k~ 160 (370)
+++||++|++++.+.||+|+.||+||+|++|+++||++||.+|+||||+|||++|||++|+|+||+++++++
T Consensus 1 l~~wD~~F~~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~i~~e 72 (78)
T PF01466_consen 1 LPEWDQEFLDVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEEIRKE 72 (78)
T ss_dssp HHHHHHHHT-S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHHHHHH
T ss_pred CCHHHHHHHHcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999987764
No 5
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=99.65 E-value=1.5e-16 Score=121.61 Aligned_cols=60 Identities=27% Similarity=0.463 Sum_probs=53.6
Q ss_pred cEEEEeCCCCEEEecHHHHhHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcC
Q 017517 17 YIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQ 80 (370)
Q Consensus 17 ~IkL~SsDG~iF~Vs~eaA~qS~tI~~mL~~~g~~~~~~~~IPLP~nVss~iLkkIIEwCehHk 80 (370)
+|+|+|+||++|.|+.++|++|++|++|+.+.+.. ..+|||| +|++.+|++|++||+||+
T Consensus 2 ~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~---~~~Ipl~-~v~~~~L~kViewc~~H~ 61 (62)
T PF03931_consen 2 YVKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGDE---DEPIPLP-NVSSRILKKVIEWCEHHK 61 (62)
T ss_dssp EEEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCCC---GTEEEET-TS-HHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhccc---ccccccC-ccCHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999866543 2289999 899999999999999996
No 6
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=99.37 E-value=1e-12 Score=110.27 Aligned_cols=98 Identities=19% Similarity=0.199 Sum_probs=83.4
Q ss_pred CCCccEEEEeCCCCEEEecHHHHhHcHHHHHHHhhcCCCC-CCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhchh
Q 017517 13 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGS-SKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKS 91 (370)
Q Consensus 13 ~~s~~IkL~SsDG~iF~Vs~eaA~qS~tI~~mL~~~g~~~-~~~~~IPLP~nVss~iLkkIIEwCehHk~~~~s~~ei~~ 91 (370)
|.+.+|+|+|+||.+|.|.+++|+.|++|+.|+...|... ..+..+-++ .|.+.+|+||.+|+.+......+..++|+
T Consensus 14 p~~~yVkLvS~Ddhefiikre~AmtSgTiraml~gpg~~se~~~n~v~f~-di~shiLeKvc~Yl~Yk~rY~~~s~eiPe 92 (112)
T KOG3473|consen 14 PDSMYVKLVSSDDHEFIIKREHAMTSGTIRAMLSGPGVFSEAEKNEVYFR-DIPSHILEKVCEYLAYKVRYTNSSTEIPE 92 (112)
T ss_pred cchhheEeecCCCcEEEEeehhhhhhhHHHHHHcCCccccccccceEEec-cchHHHHHHHHHHhhheeeeccccccCCC
Confidence 3467999999999999999999999999999987665432 245678998 79999999999999987766555568898
Q ss_pred hhhhhccCChhHHHHHHhhcccCCC
Q 017517 92 FDEKFIRMDTKRLCELTSAADSLQL 116 (370)
Q Consensus 92 WD~eFLk~D~e~LfeLI~AAnYLdI 116 (370)
| .+.+++.++|+.||+||++
T Consensus 93 F-----~IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 93 F-----DIPPEMALELLMAANYLEC 112 (112)
T ss_pred C-----CCCHHHHHHHHHHhhhhcC
Confidence 8 5789999999999999974
No 7
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=97.92 E-value=5.1e-05 Score=61.26 Aligned_cols=99 Identities=22% Similarity=0.264 Sum_probs=75.8
Q ss_pred CccEEEEeCCCCEEEecHHHHh-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhchhhh
Q 017517 15 KSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFD 93 (370)
Q Consensus 15 s~~IkL~SsDG~iF~Vs~eaA~-qS~tI~~mL~~~g~~~~~~~~IPLP~nVss~iLkkIIEwCehHk~~~~s~~ei~~WD 93 (370)
...++|+..||..|.|.+.++. .|+.+++++...+........|+++ ++++..+..+++||...... ++
T Consensus 10 ~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~Y~~~~~------~~--- 79 (111)
T PF00651_consen 10 FSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP-DVSPEAFEAFLEYMYTGEIE------IN--- 79 (111)
T ss_dssp S--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET-TSCHHHHHHHHHHHHHSEEE------EE---
T ss_pred CCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc-cccccccccccccccCCccc------CC---
Confidence 4578999999999999999985 6999999987663222222468888 79999999999999543321 11
Q ss_pred hhhccCChhHHHHHHhhcccCCCchHHHHHHHHHHH
Q 017517 94 EKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALAR 129 (370)
Q Consensus 94 ~eFLk~D~e~LfeLI~AAnYLdIk~LldL~ck~VA~ 129 (370)
..+.+.+|+.+|++|+++.|...|+..+..
T Consensus 80 ------~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 80 ------SDENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp -------TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 256799999999999999999999988754
No 8
>PHA02713 hypothetical protein; Provisional
Probab=97.65 E-value=0.0002 Score=75.59 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=84.5
Q ss_pred CccEEEEeCCCCEEEecHHHHh-HcHHHHHHHhhcCCCCC-CCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhchhh
Q 017517 15 KSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSS-KNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSF 92 (370)
Q Consensus 15 s~~IkL~SsDG~iF~Vs~eaA~-qS~tI~~mL~~~g~~~~-~~~~IPLP~nVss~iLkkIIEwCehHk~~~~s~~ei~~W 92 (370)
-..|+|...+|+.|.+.+.++. .|++++.|+.. ++.+. ....|.|. .|++.+|+.||+|+....
T Consensus 25 l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~-~~~e~~~~~~v~l~-~v~~~~~~~ll~y~Yt~~------------ 90 (557)
T PHA02713 25 LCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTT-PMIIRDLVTRVNLQ-MFDKDAVKNIVQYLYNRH------------ 90 (557)
T ss_pred CCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcC-CchhhccCceEEec-cCCHHHHHHHHHHhcCCC------------
Confidence 4578998888999999999887 69999999753 33221 24568897 799999999999987642
Q ss_pred hhhhccCChhHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHh
Q 017517 93 DEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRE 141 (370)
Q Consensus 93 D~eFLk~D~e~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRk 141 (370)
++.+.+.+|+.||++|+|+.|.++||..+...+.-.+-=+|..
T Consensus 91 ------i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~ 133 (557)
T PHA02713 91 ------ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYH 133 (557)
T ss_pred ------CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHH
Confidence 2345699999999999999999999999988776655545543
No 9
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.44 E-value=0.00034 Score=52.73 Aligned_cols=85 Identities=22% Similarity=0.246 Sum_probs=65.8
Q ss_pred eCCCCEEEecHHHHhH-cHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhchhhhhhhccCC
Q 017517 22 TADGSIQQVEQEVAMF-CPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMD 100 (370)
Q Consensus 22 SsDG~iF~Vs~eaA~q-S~tI~~mL~~~g~~~~~~~~IPLP~nVss~iLkkIIEwCehHk~~~~s~~ei~~WD~eFLk~D 100 (370)
..+|..|.|.+.++.. |+.++.++..... ......|.++ ++++.+|..|++||...... ++
T Consensus 5 ~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~-~~~~~~i~l~-~~~~~~f~~~l~~ly~~~~~----------------~~ 66 (90)
T smart00225 5 VVGGKKFKAHKAVLAACSPYFKALFSGDFK-ESKKSEIYLD-DVSPEDFRALLEFLYTGKLD----------------LP 66 (90)
T ss_pred EECCEEEehHHHHHhhcCHHHHHHHcCCCc-cCCCCEEEec-CCCHHHHHHHHHeecCceee----------------cC
Confidence 4577999999988875 7999988754322 1135678898 79999999999999865321 23
Q ss_pred hhHHHHHHhhcccCCCchHHHHHH
Q 017517 101 TKRLCELTSAADSLQLKPLVDLTS 124 (370)
Q Consensus 101 ~e~LfeLI~AAnYLdIk~LldL~c 124 (370)
...+.+|+.+|.+++++.|.+.|+
T Consensus 67 ~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 67 EENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHHHHHHHHHCcHHHHhhhC
Confidence 336889999999999999998874
No 10
>PHA03098 kelch-like protein; Provisional
Probab=97.07 E-value=0.003 Score=65.26 Aligned_cols=98 Identities=13% Similarity=0.188 Sum_probs=76.3
Q ss_pred ccEEEEe-CCCCEEEecHHHHh-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhchhhh
Q 017517 16 SYIWLQT-ADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFD 93 (370)
Q Consensus 16 ~~IkL~S-sDG~iF~Vs~eaA~-qS~tI~~mL~~~g~~~~~~~~IPLP~nVss~iLkkIIEwCehHk~~~~s~~ei~~WD 93 (370)
..++|.- .+|+.|.+.+.++. .|+.++.|+... +. ...|.|+ . +..+|+.|++|+..-.-
T Consensus 10 ~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~-~~---~~~i~l~-~-~~~~~~~~l~y~Ytg~~------------ 71 (534)
T PHA03098 10 CDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNN-FK---ENEINLN-I-DYDSFNEVIKYIYTGKI------------ 71 (534)
T ss_pred CCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCC-CC---CceEEec-C-CHHHHHHHHHHhcCCce------------
Confidence 4566664 68999999999986 589999987643 21 4568897 5 99999999999876542
Q ss_pred hhhccCChhHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCC
Q 017517 94 EKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKT 135 (370)
Q Consensus 94 ~eFLk~D~e~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKT 135 (370)
.++.+.+.+|+.||++|+|+.|.++|++.+...|.-.+
T Consensus 72 ----~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~n 109 (534)
T PHA03098 72 ----NITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNN 109 (534)
T ss_pred ----EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhH
Confidence 24556689999999999999999999988877654433
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=96.87 E-value=0.0021 Score=66.53 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=69.2
Q ss_pred cEEEEeCCCCEEEecHHHH-hHcHHHHHHHhhcCCCCCCCcccccC-CCCCHHHHHHHHHHHHhcCCCCCCchhchhhhh
Q 017517 17 YIWLQTADGSIQQVEQEVA-MFCPLICQEVIQKGMGSSKNYAISLP-QRVNPAMLSLILDYCRFHQVPGSSNKERKSFDE 94 (370)
Q Consensus 17 ~IkL~SsDG~iF~Vs~eaA-~qS~tI~~mL~~~g~~~~~~~~IPLP-~nVss~iLkkIIEwCehHk~~~~s~~ei~~WD~ 94 (370)
.-.+...-|..|.+.+.++ ..|++++.|+.. ++.++. ..|.+. .+|+..+|+.||+|+..-+
T Consensus 22 ~~~~~~~~~~~~~~HR~VLAa~S~YFraMF~~-~~~Es~-~~v~~~~~~v~~~~l~~lldy~YTg~-------------- 85 (480)
T PHA02790 22 FKTIIEAIGGNIIVNSTILKKLSPYFRTHLRQ-KYTKNK-DPVTRVCLDLDIHSLTSIVIYSYTGK-------------- 85 (480)
T ss_pred hceEEEEcCcEEeeehhhhhhcCHHHHHHhcC-Cccccc-cceEEEecCcCHHHHHHHHHhheeee--------------
Confidence 3344555688999999995 458999999854 333322 234331 2699999999999974433
Q ss_pred hhccCChhHHHHHHhhcccCCCchHHHHHHHHHHHHHh
Q 017517 95 KFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 132 (370)
Q Consensus 95 eFLk~D~e~LfeLI~AAnYLdIk~LldL~ck~VA~~Ik 132 (370)
+.++.+.+.+|+.||++|+|+.+++.||+.+...|.
T Consensus 86 --l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~ 121 (480)
T PHA02790 86 --VYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFR 121 (480)
T ss_pred --EEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 134556688888888888888888888887765543
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.31 E-value=0.0098 Score=63.48 Aligned_cols=94 Identities=27% Similarity=0.334 Sum_probs=74.9
Q ss_pred cEEEEeCCCCEEEecHHHHh-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhchhhhhh
Q 017517 17 YIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEK 95 (370)
Q Consensus 17 ~IkL~SsDG~iF~Vs~eaA~-qS~tI~~mL~~~g~~~~~~~~IPLP~nVss~iLkkIIEwCehHk~~~~s~~ei~~WD~e 95 (370)
.+.|.-.+ +.|.+.+.++. .|++++.|+.. +..+.....|.|. .|++.+|..+++|+.....
T Consensus 38 Dv~L~v~~-~~~~aHR~VLAa~S~YFraMFt~-~l~e~~~~~i~l~-~v~~~~l~~ll~y~Yt~~i-------------- 100 (571)
T KOG4441|consen 38 DVTLLVGD-REFPAHRVVLAACSPYFRAMFTS-GLKESKQKEINLE-GVDPETLELLLDYAYTGKL-------------- 100 (571)
T ss_pred eEEEEECC-eeechHHHHHHhccHHHHHHhcC-CcccccceEEEEe-cCCHHHHHHHHHHhhcceE--------------
Confidence 45565555 89999888876 58999999874 3333456779997 6999999999999877653
Q ss_pred hccCChhHHHHHHhhcccCCCchHHHHHHHHHHH
Q 017517 96 FIRMDTKRLCELTSAADSLQLKPLVDLTSRALAR 129 (370)
Q Consensus 96 FLk~D~e~LfeLI~AAnYLdIk~LldL~ck~VA~ 129 (370)
.++.+.+-+|+.||.+|+|..+++.||..+..
T Consensus 101 --~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~ 132 (571)
T KOG4441|consen 101 --EISEDNVQELLEAASLLQIPEVVDACCEFLES 132 (571)
T ss_pred --EechHhHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 35667888999999999999999999987764
No 13
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=88.10 E-value=2.3 Score=41.19 Aligned_cols=102 Identities=24% Similarity=0.281 Sum_probs=75.4
Q ss_pred ccEEEEeCCCCEEEecHHHHh-HcHHHHHHHhhcC-CCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhchhhh
Q 017517 16 SYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKG-MGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFD 93 (370)
Q Consensus 16 ~~IkL~SsDG~iF~Vs~eaA~-qS~tI~~mL~~~g-~~~~~~~~IPLP~nVss~iLkkIIEwCehHk~~~~s~~ei~~WD 93 (370)
..|+| ---|.+|.-+...+. +.+.++.|+...- ...+....|=| .-+++-+..|+.|++--..+ +|+
T Consensus 5 ~~vkL-nvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI--DRSpKHF~~ILNfmRdGdv~------LPe-- 73 (230)
T KOG2716|consen 5 ETVKL-NVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI--DRSPKHFDTILNFMRDGDVD------LPE-- 73 (230)
T ss_pred ceEEE-ecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe--cCChhHHHHHHHhhhccccc------Ccc--
Confidence 34553 346889998888876 4788888876442 12223345666 58999999999999843322 222
Q ss_pred hhhccCChhHHHHHHhhcccCCCchHHHHHHHHHHHHHhCC
Q 017517 94 EKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGK 134 (370)
Q Consensus 94 ~eFLk~D~e~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGK 134 (370)
+...|-+|+.=|.|..+.+|+++|..+++..+.+.
T Consensus 74 ------~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~~~~~ 108 (230)
T KOG2716|consen 74 ------SEKELKELLREAEFYLLDGLVELCQSAIARLIRGY 108 (230)
T ss_pred ------chHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccCc
Confidence 45779999999999999999999999999987775
No 14
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=81.60 E-value=1.4 Score=41.49 Aligned_cols=37 Identities=32% Similarity=0.565 Sum_probs=29.8
Q ss_pred hhccc--CCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 017517 109 SAADS--LQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (370)
Q Consensus 109 ~AAnY--LdIk~LldL~ck~VA~~IkGKTpEEIRk~FgI~~D~T 150 (370)
.|||. =+|--|.++||+.. |.-+.+||+.||||+||.
T Consensus 162 eaanrwtDnI~il~dy~~rkf-----~~e~nqi~~~fgIPed~d 200 (203)
T KOG3433|consen 162 EAANRWTDNIFILIDYLYRKF-----GLEPNQIRKEFGIPEDFD 200 (203)
T ss_pred HHHhhhhhhHHHHHHHHHHhc-----CCCHHHHhHhcCCCcccc
Confidence 44443 37788888888766 899999999999999884
No 15
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=79.46 E-value=1.4 Score=41.45 Aligned_cols=31 Identities=32% Similarity=0.617 Sum_probs=26.2
Q ss_pred CCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 017517 115 QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (370)
Q Consensus 115 dIk~LldL~ck~VA~~IkGKTpEEIRk~FgI~~D~T 150 (370)
+|.-|.++.|+.. |.-|+|||+.||||+||.
T Consensus 174 nI~ilidy~c~kf-----~~~~~qir~~fgIPedld 204 (209)
T COG5124 174 NIEILIDYLCKKF-----FLKPEQIRKEFGIPEDLD 204 (209)
T ss_pred hHHHHHHHHHHHc-----CCCHHHHHHhcCCCcchh
Confidence 6777888888665 889999999999999874
No 16
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=72.60 E-value=5.9 Score=41.62 Aligned_cols=113 Identities=13% Similarity=0.089 Sum_probs=76.0
Q ss_pred CCCEEEecHHHHhHcHHHHHHHhhcCCCCCCC---cccccCCCCCHHHHHHHHHHHHhcCCCCCCchhchhhhhhhccCC
Q 017517 24 DGSIQQVEQEVAMFCPLICQEVIQKGMGSSKN---YAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMD 100 (370)
Q Consensus 24 DG~iF~Vs~eaA~qS~tI~~mL~~~g~~~~~~---~~IPLP~nVss~iLkkIIEwCehHk~~~~s~~ei~~WD~eFLk~D 100 (370)
=|.+..+..--+.||+.+..|+...-.....+ -.||=| +|+...|.-++-=+.+.. +.++
T Consensus 77 lg~eWrlHk~yL~QS~yf~smf~Gtw~es~~~iIqleI~Dp-~Id~~al~~a~gsLY~dE----------------veI~ 139 (488)
T KOG4682|consen 77 LGFEWRLHKPYLFQSEYFKSMFSGTWKESSMNIIQLEIPDP-NIDVVALQVAFGSLYRDE----------------VEIK 139 (488)
T ss_pred ccceeeeeeeeeeccHHHHHHhccccChhhCceEEEEcCCC-cccHHHHHHHHhhhhhhh----------------eecc
Confidence 47777888888888888888865442211111 135556 688888876665443321 2467
Q ss_pred hhHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhc
Q 017517 101 TKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLE 156 (370)
Q Consensus 101 ~e~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRk~FgI~~D~TpEEEeE 156 (370)
.+.+..++.||.+|..++|++-|..++-.. -+|+-+..++...+-+-.|.-.+
T Consensus 140 l~dv~gvlAaA~~lqldgl~qrC~evMie~---lspkta~~yYea~ckYgle~vk~ 192 (488)
T KOG4682|consen 140 LSDVVGVLAAACLLQLDGLIQRCGEVMIET---LSPKTACGYYEAACKYGLESVKK 192 (488)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHh---cChhhhhHhhhhhhhhhhHHHHH
Confidence 889999999999999999999998776544 45555666776666555544333
No 17
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=71.58 E-value=4.8 Score=45.71 Aligned_cols=115 Identities=22% Similarity=0.216 Sum_probs=72.0
Q ss_pred CCCCCccEEEEeCCCCEEEecHHHHh-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhc
Q 017517 11 PEMMKSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKER 89 (370)
Q Consensus 11 Pe~~s~~IkL~SsDG~iF~Vs~eaA~-qS~tI~~mL~~~g~~~~~~~~IPLP~nVss~iLkkIIEwCehHk~~~~s~~ei 89 (370)
||.+-..|++ .||.+|.....++. .+.++..|+.-.-+..+.-.+--.| ++.+.|+-|++|+.---.
T Consensus 708 ~e~~d~~i~~--KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p--~~~e~m~ivLdylYs~d~-------- 775 (1267)
T KOG0783|consen 708 EETMDTVIKL--KDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSP--LTVEHMSIVLDYLYSDDK-------- 775 (1267)
T ss_pred ccceeEEEEe--cCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCc--chHHHHHHHHHHHHccch--------
Confidence 5544444555 49998876554443 2445554544333321111112234 779999999999753211
Q ss_pred hhhhhhhcc--CChhHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHh
Q 017517 90 KSFDEKFIR--MDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRE 141 (370)
Q Consensus 90 ~~WD~eFLk--~D~e~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRk 141 (370)
..|++ -..+-+|+++..|+-|=|..|-++|-+.+-+.+.=|+..++-+
T Consensus 776 ----~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~lle 825 (1267)
T KOG0783|consen 776 ----VELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLE 825 (1267)
T ss_pred ----HHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHH
Confidence 22222 2445589999999999999999999998888888777655543
No 18
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=63.65 E-value=3.7 Score=32.95 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=52.8
Q ss_pred CCCEEEecHHHHhHc--HHHHHHHhhc--CCCCCCCcccccCCCCCHHHHHHHHHHHHhc-CCCCCCchhchhhhhhhcc
Q 017517 24 DGSIQQVEQEVAMFC--PLICQEVIQK--GMGSSKNYAISLPQRVNPAMLSLILDYCRFH-QVPGSSNKERKSFDEKFIR 98 (370)
Q Consensus 24 DG~iF~Vs~eaA~qS--~tI~~mL~~~--g~~~~~~~~IPLP~nVss~iLkkIIEwCehH-k~~~~s~~ei~~WD~eFLk 98 (370)
-|+.|.++.+.+..- ..+..++... .........+=+ .-++..++.|+.|++.. .-+.
T Consensus 6 GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi--DRdp~~F~~IL~ylr~~~~l~~--------------- 68 (94)
T PF02214_consen 6 GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI--DRDPELFEYILNYLRTGGKLPI--------------- 68 (94)
T ss_dssp TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE--SS-HHHHHHHHHHHHHTSSB-----------------
T ss_pred CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe--ccChhhhhHHHHHHhhcCccCC---------------
Confidence 589999999998742 4566555532 111123445555 58999999999999985 2111
Q ss_pred CChhHHHHHHhhcccCCCchH-HHHH
Q 017517 99 MDTKRLCELTSAADSLQLKPL-VDLT 123 (370)
Q Consensus 99 ~D~e~LfeLI~AAnYLdIk~L-ldL~ 123 (370)
.+...+..|...|.|.+|..| ++.|
T Consensus 69 ~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 69 PDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp -TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred CCchhHHHHHHHHHHcCCCccccCCC
Confidence 123456788899999999998 6544
No 19
>PF07928 Vps54: Vps54-like protein; InterPro: IPR012501 This family contains various proteins that are homologues of the yeast Vps54 protein, such as the rat homologue (Q9JMK8 from SWISSPROT), the human homologue (Q86YF7 from SWISSPROT), and the mouse homologue (Q8R3X1 from SWISSPROT). In yeast, Vps54 associates with Vps52 and Vps53 proteins to form a trimolecular complex that is involved in protein transport between Golgi, endosomal, and vacuolar compartments []. All Vps54 homologues contain a coiled coil region (not found in the region featured in this family) and multiple dileucine motifs []. ; GO: 0042147 retrograde transport, endosome to Golgi; PDB: 3N1E_B 3N1B_B.
Probab=54.57 E-value=4.1 Score=36.14 Aligned_cols=120 Identities=21% Similarity=0.314 Sum_probs=12.4
Q ss_pred CCCEEEecHHHHhHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhchhhhhhhccCChhH
Q 017517 24 DGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKR 103 (370)
Q Consensus 24 DG~iF~Vs~eaA~qS~tI~~mL~~~g~~~~~~~~IPLP~nVss~iLkkIIEwCehHk~~~~s~~ei~~WD~eFLk~D~e~ 103 (370)
||+.|.|...++..-+.|.+.+. ....+| .+.++++.++++|.+.. +..
T Consensus 1 d~e~f~vv~s~l~ll~~l~~Y~~---------~~~~~P-~~a~di~~~l~elLk~f---------------------NSr 49 (135)
T PF07928_consen 1 DNEKFVVVGSALLLLKMLSDYLQ---------LASNFP-SLAPDILSRLLELLKLF---------------------NSR 49 (135)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceecHHHHHHHHHHHHHHHH---------HHHHCc-hhHHHHHHHHHHHHHHH---------------------HHH
Confidence 67777777777766666655432 122366 57777777777775444 355
Q ss_pred HHHHHhhcccCCCchHHHHHHHHHHHHHhCC-----CHHHHHhHcCCCCCCChHhhhccccccCCChhHHHHHHHHHHHH
Q 017517 104 LCELTSAADSLQLKPLVDLTSRALARIIEGK-----TPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKR 178 (370)
Q Consensus 104 LfeLI~AAnYLdIk~LldL~ck~VA~~IkGK-----TpEEIRk~FgI~~D~TpEEEeEi~k~~~~dp~~~~ln~~~ak~~ 178 (370)
.++|+..|-....-+|-.++.+.+|-..+.- -.--||.+|.-- .++ -..-++ -.|+.+.+.|..-+
T Consensus 50 ~~qlVLGAGA~~~agLK~IT~KhLALasq~L~~~~~lip~i~~~~~~~--~~~-~~~~~~------~~fd~v~~dy~~H~ 120 (135)
T PF07928_consen 50 CCQLVLGAGAMRSAGLKTITAKHLALASQSLSFIISLIPYIREFFERH--LPS-KQQSLL------REFDKVKRDYQDHQ 120 (135)
T ss_dssp -------------------------------------------------------HHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhccCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCc-ccchHH------HHHHHHHHHHHHHH
Confidence 7889999999999998888887776543321 233445444432 111 011111 14666777777766
Q ss_pred HHHHH
Q 017517 179 KELKE 183 (370)
Q Consensus 179 ~el~~ 183 (370)
.|+-.
T Consensus 121 ~eI~~ 125 (135)
T PF07928_consen 121 NEIFS 125 (135)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66643
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=54.37 E-value=6.8 Score=44.83 Aligned_cols=7 Identities=14% Similarity=0.520 Sum_probs=4.8
Q ss_pred HHHHhhh
Q 017517 203 DDLLQFI 209 (370)
Q Consensus 203 d~ll~fi 209 (370)
++.++|+
T Consensus 882 k~~~~~~ 888 (1018)
T KOG2002|consen 882 KEILKLP 888 (1018)
T ss_pred HHHHhcc
Confidence 5667777
No 21
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=49.17 E-value=31 Score=35.12 Aligned_cols=89 Identities=8% Similarity=0.094 Sum_probs=60.5
Q ss_pred CEEEecHHHHhH-cHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCchhchhhhhhhccCChhHH
Q 017517 26 SIQQVEQEVAMF-CPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKRL 104 (370)
Q Consensus 26 ~iF~Vs~eaA~q-S~tI~~mL~~~g~~~~~~~~IPLP~nVss~iLkkIIEwCehHk~~~~s~~ei~~WD~eFLk~D~e~L 104 (370)
+.|..+...+.. .++++..+...-.+.....+|+|-..-+-.|++=+++|++... + .++.+..
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~---------p-------~l~~~Nv 77 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEP---------P-------SLTPSNV 77 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCC---------C-------cCCcCcE
Confidence 678888888764 7888887643100111344566643466777888888877611 1 2455667
Q ss_pred HHHHhhcccCCCchHHHHHHHHHHHH
Q 017517 105 CELTSAADSLQLKPLVDLTSRALARI 130 (370)
Q Consensus 105 feLI~AAnYLdIk~LldL~ck~VA~~ 130 (370)
..|+.-|+||+|++|++.|-.++...
T Consensus 78 vsIliSS~FL~M~~Lve~cl~y~~~~ 103 (317)
T PF11822_consen 78 VSILISSEFLQMESLVEECLQYCHDH 103 (317)
T ss_pred EEeEehhhhhccHHHHHHHHHHHHHh
Confidence 88899999999999999998887543
No 22
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=48.89 E-value=77 Score=33.88 Aligned_cols=146 Identities=14% Similarity=0.198 Sum_probs=95.2
Q ss_pred cEEEEeCCCCEEEecHHHH-hHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCC--CC--------
Q 017517 17 YIWLQTADGSIQQVEQEVA-MFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPG--SS-------- 85 (370)
Q Consensus 17 ~IkL~SsDG~iF~Vs~eaA-~qS~tI~~mL~~~g~~~~~~~~IPLP~nVss~iLkkIIEwCehHk~~~--~s-------- 85 (370)
.|+++-.| ..|...+-++ ..|..++.++ =.|+.++....|||. .-++..++.++.|+..-+..- -.
T Consensus 46 DVtfvve~-~rfpAHRvILAaRs~yFRAlL-YgGm~Es~q~~ipLq-~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~L 122 (620)
T KOG4350|consen 46 DVTFVVED-TRFPAHRVILAARSSYFRALL-YGGMQESHQQLIPLQ-ETNSEAFRALLRYIYTGKIDLAGVEEDILLDYL 122 (620)
T ss_pred ceEEEEec-cccchhhhhHHHHHHHHHHHH-hhhhhhhhhcccccc-cccHHHHHHHHHHHhhcceecccchHHHHHHHH
Confidence 56666666 6666665554 4588998764 345555456779996 677999999999987766421 00
Q ss_pred -----------chhchhhhhhhccCChhHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhh
Q 017517 86 -----------NKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEK 154 (370)
Q Consensus 86 -----------~~ei~~WD~eFLk~D~e~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRk~FgI~~D~TpEEE 154 (370)
...+.++-.+.+ ..+.+|-++.||.+.++..|.++||..+ .+...++-.--+.. -++.+-.
T Consensus 123 slAh~Ygf~~Le~aiSeYl~~iL--~~~NvCmifdaA~ly~l~~Lt~~C~mfm-----DrnA~~lL~~~sFn-~LSk~sL 194 (620)
T KOG4350|consen 123 SLAHRYGFIQLETAISEYLKEIL--KNENVCMIFDAAYLYQLTDLTDYCMMFM-----DRNADQLLEDPSFN-RLSKDSL 194 (620)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHH--cccceeeeeeHHHHhcchHHHHHHHHHH-----hcCHHhhhcCcchh-hhhHHHH
Confidence 112334444443 4566888999999999999999999554 66777774422221 2445544
Q ss_pred hccc-cccCCChhHHHHHHH
Q 017517 155 LEPL-KNTTDDPRIRLLNRL 173 (370)
Q Consensus 155 eEi~-k~~~~dp~~~~ln~~ 173 (370)
+|++ +.-++.|....++-+
T Consensus 195 ~e~l~RDsFfApE~~IFlAv 214 (620)
T KOG4350|consen 195 KELLARDSFFAPELKIFLAV 214 (620)
T ss_pred HHHHhhhcccchHHHHHHHH
Confidence 4444 346778887777654
No 23
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.28 E-value=13 Score=40.68 Aligned_cols=40 Identities=25% Similarity=0.196 Sum_probs=18.7
Q ss_pred ccccccCCCCCCc---CChHHHHHHhHHHHHHHHHhcCCchHHH
Q 017517 287 RKVDFDDVDIDDE---IDPALKEKLDREVEDFARRLNSDWPERM 327 (370)
Q Consensus 287 ~~~~~~~~~~~~~---~~~~~~~~~~~~ve~f~~~~~~~~~e~~ 327 (370)
|-+.+.|.+.++. ++-.+-.+.-+=+-+| +.||-+-+=+.
T Consensus 150 ~~v~~i~~~~~~~~~~l~r~l~~k~~k~~v~~-~~lnpdtE~k~ 192 (665)
T KOG2422|consen 150 DWVLEIDLKSDPLFTELPRSLGSKSCKLFVDF-KKLNPDTEFKL 192 (665)
T ss_pred hhHHHHhhhcccccCccchhHHHHHHHHHHhh-hccCCCchhhh
Confidence 3455655555543 3323333333333233 56777665543
No 24
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=46.56 E-value=17 Score=33.85 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=30.8
Q ss_pred HHHHHhhcccC--CCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 017517 104 LCELTSAADSL--QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (370)
Q Consensus 104 LfeLI~AAnYL--dIk~LldL~ck~VA~~IkGKTpEEIRk~FgI~~D~T 150 (370)
+..+..|||.. +|..|..+|++. -|.+.++|++.||||+||.
T Consensus 144 ~~~~~~~anrwTDNI~~l~~~~~~k-----~~~~~~~i~k~f~Ip~d~d 187 (188)
T PF03962_consen 144 IKIAKEAANRWTDNIFSLKSYLKKK-----FGMDEEDIRKEFGIPEDFD 187 (188)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHh-----cCCCHHHHHHHcCCccccC
Confidence 34445566654 666777777764 3899999999999999883
No 25
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=41.55 E-value=13 Score=41.97 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=21.6
Q ss_pred HHHhHHHHHHHH-HhcCCchHHHHHHHhcC
Q 017517 306 EKLDREVEDFAR-RLNSDWPERMQEILSLG 334 (370)
Q Consensus 306 ~~~~~~ve~f~~-~~~~~~~e~~~~~~~~~ 334 (370)
++|-+++.+-.| -||..|.+|.++++...
T Consensus 511 ~~ll~~lA~~l~p~l~~~~~~~~~~~~~~~ 540 (803)
T PLN03083 511 GSILKHLADHLRPMLINSLKERRKALFTEN 540 (803)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 466677766554 58999999999987643
No 26
>PF14384 DUF4415: Domain of unknown function (DUF4415)
Probab=40.61 E-value=24 Score=27.20 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=23.1
Q ss_pred HHhHHHHHHHHHhcCCchHHHHHHHh
Q 017517 307 KLDREVEDFARRLNSDWPERMQEILS 332 (370)
Q Consensus 307 ~~~~~ve~f~~~~~~~~~e~~~~~~~ 332 (370)
.||.+|-+|.+..-..|.-||+++|.
T Consensus 34 rld~dVl~~fka~G~gyQtriN~~Lr 59 (62)
T PF14384_consen 34 RLDPDVLEWFKAQGKGYQTRINEALR 59 (62)
T ss_pred EeCHHHHHHHHHHChhHHHHHHHHHH
Confidence 46788999999999999999999885
No 27
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=31.93 E-value=51 Score=29.26 Aligned_cols=36 Identities=31% Similarity=0.516 Sum_probs=19.0
Q ss_pred HHhCCCHHHHHhHcCCCCCCChHhhhcccccc--CCCh
Q 017517 130 IIEGKTPEEIREIFHLPDDLTEEEKLEPLKNT--TDDP 165 (370)
Q Consensus 130 ~IkGKTpEEIRk~FgI~~D~TpEEEeEi~k~~--~~dp 165 (370)
...|.|.+|-++|+|++...++||-.+.-+.. .+||
T Consensus 51 ~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~ 88 (127)
T PF03656_consen 51 NSKGMTLDEARQILNVKEELSREEIQKRYKHLFKANDP 88 (127)
T ss_dssp ------HHHHHHHHT--G--SHHHHHHHHHHHHHHT-C
T ss_pred hcCCCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCC
Confidence 45699999999999999989988877654442 3465
No 28
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=29.51 E-value=30 Score=31.43 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=27.3
Q ss_pred HHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCC
Q 017517 106 ELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDL 149 (370)
Q Consensus 106 eLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRk~FgI~~D~ 149 (370)
.|+.||..|++.. .++.|-..+.+++.|||++++
T Consensus 130 ~l~LaA~~~Glgs----------~~~~g~~~~~v~~~l~ip~~~ 163 (195)
T PRK05365 130 YLILAARALGLDA----------GPMSGFDAAAVDAEFFAGTTW 163 (195)
T ss_pred HHHHHHHHcCCcc----------CCccccCHHHHHHHhCCCCCe
Confidence 3888898888876 245677889999999998655
No 29
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.32 E-value=27 Score=38.39 Aligned_cols=13 Identities=23% Similarity=0.217 Sum_probs=5.4
Q ss_pred HcCCCCCCChHhh
Q 017517 142 IFHLPDDLTEEEK 154 (370)
Q Consensus 142 ~FgI~~D~TpEEE 154 (370)
.+...+|-..||.
T Consensus 24 ~~d~esded~e~s 36 (665)
T KOG2422|consen 24 ANDMESDEDTEES 36 (665)
T ss_pred hccccccccchhc
Confidence 3444444433333
No 30
>PF01886 DUF61: Protein of unknown function DUF61; InterPro: IPR002746 The proteins in this entry are functionally uncharacterised.
Probab=28.06 E-value=44 Score=29.75 Aligned_cols=45 Identities=27% Similarity=0.426 Sum_probs=33.2
Q ss_pred HhHHHHHHHHHhcCCchHHHHHHHhcCCCCccceeecCCCCccccch
Q 017517 308 LDREVEDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGNGTIRRYA 354 (370)
Q Consensus 308 ~~~~ve~f~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (370)
|||=++...+++|+.||.+=.-+-.+-+|-+|. .+..||+.+++-
T Consensus 1 ~dr~~~~ei~~iN~~lP~~rktL~eLL~ee~P~--i~lrdG~~h~f~ 45 (132)
T PF01886_consen 1 IDRILEKEIRRINKHLPRERKTLKELLEEEKPS--IILRDGSRHRFD 45 (132)
T ss_pred ChhHHHHHHHHHHhhchHhhhhHHHHHhCCCCe--EEecCCCEEEEc
Confidence 567788889999999997766666666676663 445578877764
No 31
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=27.68 E-value=49 Score=23.64 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=20.0
Q ss_pred HHHhHHHHHHHHHhcCCchHHHHHHHh
Q 017517 306 EKLDREVEDFARRLNSDWPERMQEILS 332 (370)
Q Consensus 306 ~~~~~~ve~f~~~~~~~~~e~~~~~~~ 332 (370)
++||+-+|+|.++.+-.| |||..-|
T Consensus 3 ~evd~rAe~FI~~f~~ql--rlqr~~S 27 (38)
T PF05553_consen 3 DEVDRRAEEFIAKFREQL--RLQRQES 27 (38)
T ss_pred hHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 578999999999999888 6664433
No 32
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=26.16 E-value=34 Score=30.69 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=26.9
Q ss_pred HHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCC
Q 017517 107 LTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDL 149 (370)
Q Consensus 107 LI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRk~FgI~~D~ 149 (370)
|+.||..|++.. .+|.|-..+++++.|||++++
T Consensus 124 l~LaA~~lGlgs----------~~~~g~d~~~~~~~L~lp~~~ 156 (185)
T cd02148 124 FILAARALGLDA----------GPMSGFDAAAVDAEFFADTRW 156 (185)
T ss_pred HHHHHHHcCCCc----------CCCcccCHHHHHHHhCCCCCe
Confidence 888888888875 355677889999999999765
No 33
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=25.75 E-value=37 Score=28.74 Aligned_cols=14 Identities=43% Similarity=0.719 Sum_probs=11.2
Q ss_pred CCchHHHHHHHhcC
Q 017517 321 SDWPERMQEILSLG 334 (370)
Q Consensus 321 ~~~~e~~~~~~~~~ 334 (370)
|||.||+-.+||.-
T Consensus 23 SDWaERL~gvla~F 36 (92)
T PF12112_consen 23 SDWAERLCGVLASF 36 (92)
T ss_dssp TTHHHHHHHTT-EE
T ss_pred ccHHHHHHHHHHcc
Confidence 89999999887763
No 34
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=24.45 E-value=92 Score=23.12 Aligned_cols=39 Identities=36% Similarity=0.465 Sum_probs=25.3
Q ss_pred hCCCHHHHHhHcCCCCCCChHhhhccccccCCChhHHHHHHHHHHHHHHHHHH
Q 017517 132 EGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKER 184 (370)
Q Consensus 132 kGKTpEEIRk~FgI~~D~TpEEEeEi~k~~~~dp~~~~ln~~~ak~~~el~~~ 184 (370)
-|-|.+|||+++.+.++ .+|.......+.+.+++++.++
T Consensus 13 lGfsL~eI~~~l~l~~~--------------~~~~~~~~~~~l~~~~~~i~~~ 51 (65)
T PF09278_consen 13 LGFSLEEIRELLELYDQ--------------GDPPCADRRALLEEKLEEIEEQ 51 (65)
T ss_dssp TT--HHHHHHHHHHCCS--------------HCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhccCC--------------CCCCHHHHHHHHHHHHHHHHHH
Confidence 39999999999988754 1233344556667788887665
No 35
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=22.56 E-value=29 Score=31.86 Aligned_cols=7 Identities=43% Similarity=0.302 Sum_probs=0.0
Q ss_pred ChHhhhc
Q 017517 150 TEEEKLE 156 (370)
Q Consensus 150 TpEEEeE 156 (370)
|+||.+.
T Consensus 2 ~eEEl~r 8 (154)
T PF06375_consen 2 DEEELER 8 (154)
T ss_dssp -------
T ss_pred CHHHHHH
Confidence 4444443
No 36
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=22.32 E-value=2.3e+02 Score=30.12 Aligned_cols=108 Identities=15% Similarity=0.075 Sum_probs=74.0
Q ss_pred EeCCCCEEEecHHHHhHcHHHHHHHhhcCCCCCCCcc---cccCCCCCHHHHHHHHHHHHhcCCCCC----C--------
Q 017517 21 QTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYA---ISLPQRVNPAMLSLILDYCRFHQVPGS----S-------- 85 (370)
Q Consensus 21 ~SsDG~iF~Vs~eaA~qS~tI~~mL~~~g~~~~~~~~---IPLP~nVss~iLkkIIEwCehHk~~~~----s-------- 85 (370)
++-......+...++..+.+...|+...-...+.+.. ..|| +....+.+.++.|+..|+.+-+ +
T Consensus 296 ql~~~~RyP~hla~i~R~eyfk~mf~g~f~e~s~n~~~p~lslp-~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~ 374 (516)
T KOG0511|consen 296 QLPEEDRYPAHLARILRVEYFKSMFVGDFIESSVNDTRPGLSLP-SLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADK 374 (516)
T ss_pred cccccccccHHHHHHHHHHHHHHHhccchhhhcCCccccccccc-hHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhH
Confidence 3344445788888888899999887655443223443 4588 7889999999999999987521 0
Q ss_pred -------------chhchhhhhhhccCChhHHHHHHhhcccCCCchHHHHHHHHHHHHHh
Q 017517 86 -------------NKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 132 (370)
Q Consensus 86 -------------~~ei~~WD~eFLk~D~e~LfeLI~AAnYLdIk~LldL~ck~VA~~Ik 132 (370)
...+..| .+| +|.-.+++++.-|.-+....|=.++...+|+.+.
T Consensus 375 lal~~dr~Lkt~as~~itq~-~e~--id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~ 431 (516)
T KOG0511|consen 375 LALADDRLLKTAASAEITQW-LEL--IDMYGVLDILEYCWDLVACRLEQFAETHEARHLL 431 (516)
T ss_pred hhhhhhhhhhhhhhHHHHHH-HHH--HHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 1123344 222 2444578888888888888888888888887654
No 37
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=20.02 E-value=76 Score=28.08 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=31.4
Q ss_pred HHhhcccCCCchHHHHHHHHHHHHHhCC------------CHHHHHh-HcCCCCC
Q 017517 107 LTSAADSLQLKPLVDLTSRALARIIEGK------------TPEEIRE-IFHLPDD 148 (370)
Q Consensus 107 LI~AAnYLdIk~LldL~ck~VA~~IkGK------------TpEEIRk-~FgI~~D 148 (370)
.-.|+....++..+-.+|++||.+|+|. |+.-||. .||....
T Consensus 36 ~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~~ 90 (118)
T PF11978_consen 36 PEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDEN 90 (118)
T ss_dssp HHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS---
T ss_pred hhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCCC
Confidence 3478889999999999999999999974 2445555 7887653
Done!