BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017518
(370 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WNL|A Chain A, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase)
Ligase From Pyrococcus Horikoshii Ot3 In Complex With
Adp
pdb|1WNL|B Chain B, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase)
Ligase From Pyrococcus Horikoshii Ot3 In Complex With
Adp
pdb|1WQ7|A Chain A, Crystal Structure Of Biotin-(acetyl-coa-carboxylase)
Ligase From Pyrococcus Horikoshii Ot3
pdb|1WQ7|B Chain B, Crystal Structure Of Biotin-(acetyl-coa-carboxylase)
Ligase From Pyrococcus Horikoshii Ot3
pdb|1WQW|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5-Amp
pdb|1WQW|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5-Amp
pdb|1X01|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Atp
pdb|1X01|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Atp
pdb|2DKG|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp,
Pyrophosphate And Mg(2+)
pdb|2DKG|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp,
Pyrophosphate And Mg(2+)
pdb|2DTH|A Chain A, The Crystal Structure Of The Orthorhombic Form Of Biotin
Protein Ligase From Pyrococcus Horikoshii Ot3 In Complex
With Biotin And Adp
pdb|2DTH|B Chain B, The Crystal Structure Of The Orthorhombic Form Of Biotin
Protein Ligase From Pyrococcus Horikoshii Ot3 In Complex
With Biotin And Adp
pdb|2DTI|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp,
Pyrophosphate And Mn(2+)
pdb|2DTI|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp,
Pyrophosphate And Mn(2+)
Length = 235
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 100 MNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWE 159
M L T+ GR +I+ + ST++ S+ L G V VAD Q G GR WE
Sbjct: 1 MLGLKTSIIGRRVIYFQEITSTNEFAKTSY------LEEGTVIVADKQTMGHGRLNRKWE 54
Query: 160 SPKGCLMFSFTIQME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYL 218
SP+G L S + + + +P + ++ ++ + E + +D +IKWPND+ +
Sbjct: 55 SPEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEF-------SIDGRIKWPNDVLV 107
Query: 219 NGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTC 255
N K+ G+L K + +GIGLNVNN+ P
Sbjct: 108 NYKKIAGVLVEG----KGDKIVLGIGLNVNNKVPNGA 140
>pdb|2DVE|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, Mutation
Arg51ala
pdb|2DVE|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, Mutation
Arg51ala
pdb|2E10|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R51a
pdb|2E10|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R51a
Length = 235
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 100 MNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWE 159
M L T+ GR +I+ + ST++ S+ L G V VAD Q G GR WE
Sbjct: 1 MLGLKTSIIGRRVIYFQEITSTNEFAKTSY------LEEGTVIVADKQTMGHGRLNAKWE 54
Query: 160 SPKGCLMFSFTIQME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYL 218
SP+G L S + + + +P + ++ ++ + E + +D +IKWPND+ +
Sbjct: 55 SPEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEF-------SIDGRIKWPNDVLV 107
Query: 219 NGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTC 255
N K+ G+L K + +GIGLNVNN+ P
Sbjct: 108 NYKKIAGVLVEG----KGDKIVLGIGLNVNNKVPNGA 140
>pdb|1WPY|A Chain A, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase)
Ligase From Pyrococcus Horikoshii Ot3 In Complex With
Biotin
pdb|1WPY|B Chain B, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase)
Ligase From Pyrococcus Horikoshii Ot3 In Complex With
Biotin
pdb|2FYK|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Adp And Biotin
pdb|2FYK|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Adp And Biotin
pdb|2DTO|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 Complexed With Atp And Biotin
pdb|2DTO|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 Complexed With Atp And Biotin
Length = 235
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 18/155 (11%)
Query: 102 SLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESP 161
L T+ GR +I+ + ST++ S+ L G V VAD Q G GR WESP
Sbjct: 3 GLKTSIIGRRVIYFQEITSTNEFAKTSY------LEEGTVIVADKQTXGHGRLNRKWESP 56
Query: 162 KGCLMFSFTIQME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNG 220
+G L S + + + +P + ++ ++ + E + +D +IKWPND+ +N
Sbjct: 57 EGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEF-------SIDGRIKWPNDVLVNY 109
Query: 221 IKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTC 255
K+ G+L K + +GIGLNVNN+ P
Sbjct: 110 KKIAGVLVEG----KGDKIVLGIGLNVNNKVPNGA 140
>pdb|2DJZ|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp, K111a
Mutation
pdb|2DJZ|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-amp, K111a
Mutation
pdb|2HNI|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111a Mutation
pdb|2HNI|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111a Mutation
Length = 235
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 100 MNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWE 159
M L T+ GR +I+ + ST++ S+ L G V VAD Q G GR WE
Sbjct: 1 MLGLKTSIIGRRVIYFQEITSTNEFAKTSY------LEEGTVIVADKQTMGHGRLNRKWE 54
Query: 160 SPKGCLMFSFTIQME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYL 218
SP+G L S + + + +P + ++ ++ + E + +D +IKWPND+ +
Sbjct: 55 SPEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEF-------SIDGRIKWPNDVLV 107
Query: 219 NGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTC 255
N + G+L K + +GIGLNVNN+ P
Sbjct: 108 NYKAIAGVLVEG----KGDKIVLGIGLNVNNKVPNGA 140
>pdb|2DEQ|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, K111g
Mutation
pdb|2DEQ|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, K111g
Mutation
pdb|2E1H|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111g Mutation
pdb|2E1H|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, K111g Mutation
Length = 235
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 100 MNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWE 159
M L T+ GR +I+ + ST++ S+ L G V VAD Q G GR WE
Sbjct: 1 MLGLKTSIIGRRVIYFQEITSTNEFAKTSY------LEEGTVIVADKQTMGHGRLNRKWE 54
Query: 160 SPKGCLMFSFTIQME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYL 218
SP+G L S + + + +P + ++ ++ + E + +D +IKWPND+ +
Sbjct: 55 SPEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEF-------SIDGRIKWPNDVLV 107
Query: 219 NGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTC 255
N + G+L K + +GIGLNVNN+ P
Sbjct: 108 NYKGIAGVLVEG----KGDKIVLGIGLNVNNKVPNGA 140
>pdb|2DXU|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation R48a
pdb|2DXU|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation R48a
pdb|2DZC|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R48a
pdb|2DZC|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutation R48a
pdb|2EJG|A Chain A, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|B Chain B, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 235
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 100 MNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWE 159
M L T+ GR +I+ + ST++ S+ L G V VAD Q G G WE
Sbjct: 1 MLGLKTSIIGRRVIYFQEITSTNEFAKTSY------LEEGTVIVADKQTMGHGALNRKWE 54
Query: 160 SPKGCLMFSFTIQME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYL 218
SP+G L S + + + +P + ++ ++ + E + +D +IKWPND+ +
Sbjct: 55 SPEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEF-------SIDGRIKWPNDVLV 107
Query: 219 NGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTC 255
N K+ G+L K + +GIGLNVNN+ P
Sbjct: 108 NYKKIAGVLVEG----KGDKIVLGIGLNVNNKVPNGA 140
>pdb|2DXT|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Atp And Biotin, Mutation D104a
pdb|2DXT|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Atp And Biotin, Mutation D104a
pdb|2DZ9|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation
D104a
pdb|2DZ9|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Biotinyl-5'-Amp, Mutation
D104a
pdb|2E65|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, Mutation D104a
pdb|2E65|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Ot3, Mutation D104a
Length = 235
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query: 100 MNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWE 159
M L T+ GR +I+ + ST++ S+ L G V VAD Q G GR WE
Sbjct: 1 MLGLKTSIIGRRVIYFQEITSTNEFAKTSY------LEEGTVIVADKQTMGHGRLNRKWE 54
Query: 160 SPKGCLMFSFTIQME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYL 218
SP+G L S + + + +P + ++ ++ + E + +D +IKWPN + +
Sbjct: 55 SPEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEF-------SIDGRIKWPNAVLV 107
Query: 219 NGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTC 255
N K+ G+L K + +GIGLNVNN+ P
Sbjct: 108 NYKKIAGVLVEG----KGDKIVLGIGLNVNNKVPNGA 140
>pdb|2E41|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With The Reaction Product Analog
Biotinol-5'-Amp, Mutations R48a And K111a
pdb|2E41|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With The Reaction Product Analog
Biotinol-5'-Amp, Mutations R48a And K111a
pdb|2E64|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutations R48a And K111a
pdb|2E64|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii, Mutations R48a And K111a
pdb|2ZGW|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Adenosine And Biotin,
Mutations R48a And K111a
pdb|2ZGW|B Chain B, Crystal Structure Of Biotin Protein Ligase From Pyrococcus
Horikoshii Complexed With Adenosine And Biotin,
Mutations R48a And K111a
pdb|2EJF|A Chain A, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|B Chain B, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
Length = 235
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 18/157 (11%)
Query: 100 MNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWE 159
M L T+ GR +I+ + ST++ S+ L G V VAD Q G G WE
Sbjct: 1 MLGLKTSIIGRRVIYFQEITSTNEFAKTSY------LEEGTVIVADKQTMGHGALNRKWE 54
Query: 160 SPKGCLMFSFTIQME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYL 218
SP+G L S + + + +P + ++ ++ + E + +D +IKWPND+ +
Sbjct: 55 SPEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEF-------SIDGRIKWPNDVLV 107
Query: 219 NGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTC 255
N + G+L K + +GIGLNVNN+ P
Sbjct: 108 NYKAIAGVLVEG----KGDKIVLGIGLNVNNKVPNGA 140
>pdb|2EAY|A Chain A, Crystal Structure Of Biotin Protein Ligase From Aquifex
Aeolicus
pdb|2EAY|B Chain B, Crystal Structure Of Biotin Protein Ligase From Aquifex
Aeolicus
Length = 233
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Query: 112 LIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTI 171
LIW + ST + + +N ++ G VAD Q KGRGR W S +G L FSF +
Sbjct: 5 LIWLKEVDSTQERLKE-WNVSY-----GTALVADRQTKGRGRLGRKWLSQEGGLYFSFLL 58
Query: 172 QMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTST 231
++ + L V L+++EA+ + + +KWPND+Y KV G+LC +
Sbjct: 59 NPKEFENLLQLPLVLGLSVSEALEEITE------IPFSLKWPNDVYFQEKKVSGVLCELS 112
Query: 232 YRTKKFNVSIGIGLNVNNEE 251
K + +GIG+NVN E
Sbjct: 113 ----KDKLIVGIGINVNQRE 128
>pdb|1HXD|A Chain A, Crystal Structure Of E. Coli Biotin Repressor With Bound
Biotin
pdb|1HXD|B Chain B, Crystal Structure Of E. Coli Biotin Repressor With Bound
Biotin
pdb|2EWN|A Chain A, Ecoli Biotin Repressor With Co-repressor Analog
pdb|2EWN|B Chain B, Ecoli Biotin Repressor With Co-repressor Analog
pdb|1BIA|A Chain A, The E. Coli Biotin Holoenzyme Synthetase(Slash)bio
Repressor Crystal Structure Delineates The Biotin And
Dna- Binding Domains
pdb|1BIB|A Chain A, The E. Coli Biotin Holoenzyme Synthetase(Slash)bio
Repressor Crystal Structure Delineates The Biotin And
Dna- Binding Domains
Length = 321
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 83/195 (42%), Gaps = 32/195 (16%)
Query: 123 DVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPKGC-LMFSFTIQMEDGRVVPL 181
D + EL G C+A+ Q GRGR W SP G L S ++E G +
Sbjct: 88 DSTNQYLLDRIGELKSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAI 147
Query: 182 -LQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRT-KKFNV 239
L V + + E + + + +++KWPNDLYL K+ GIL T +T +
Sbjct: 148 GLSLVIGIVMAEVLRKLGADK------VRVKWPNDLYLQDRKLAGILVELTGKTGDAAQI 201
Query: 240 SIGIGLNVN---------------------NEEPTTCLNAVLRKLSDSTYQFRREDVIAA 278
IG G+N+ N + T ++R+L + F +E +A
Sbjct: 202 VIGAGINMAMRRVEESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEG-LAP 260
Query: 279 FFNKFETFYDTFINQ 293
+ +++E D FIN+
Sbjct: 261 YLSRWEKL-DNFINR 274
>pdb|3EFS|A Chain A, Biotin Protein Ligase From Aquifex Aeolicus In Complex
With Biotin And Atp
pdb|3EFS|B Chain B, Biotin Protein Ligase From Aquifex Aeolicus In Complex
With Biotin And Atp
pdb|3FJP|A Chain A, Apo Structure Of Biotin Protein Ligase From Aquifex
Aeolicus
pdb|3FJP|B Chain B, Apo Structure Of Biotin Protein Ligase From Aquifex
Aeolicus
Length = 233
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 16/140 (11%)
Query: 112 LIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTI 171
LIW + ST + + +N ++ G VAD Q KGRGR W S +G L FSF +
Sbjct: 5 LIWLKEVDSTQERLKE-WNVSY-----GTALVADRQTKGRGRLGRKWLSQEGGLYFSFLL 58
Query: 172 QMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTST 231
++ + L V L+++EA+ + + +KWPND+Y KV G+L +
Sbjct: 59 NPKEFENLLQLPLVLGLSVSEALEEITE------IPFSLKWPNDVYFQEKKVSGVLRELS 112
Query: 232 YRTKKFNVSIGIGLNVNNEE 251
K + +GIG+NVN E
Sbjct: 113 ----KDKLIVGIGINVNQRE 128
>pdb|3EFR|A Chain A, Biotin Protein Ligase R40g Mutant From Aquifex Aeolicus In
Complex With Biotin
pdb|3EFR|B Chain B, Biotin Protein Ligase R40g Mutant From Aquifex Aeolicus In
Complex With Biotin
Length = 233
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 112 LIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTI 171
LIW + ST + + +N ++ G VAD Q KGRG W S +G L FSF +
Sbjct: 5 LIWLKEVDSTQERLKE-WNVSY-----GTALVADRQTKGRGGLGRKWLSQEGGLYFSFLL 58
Query: 172 QMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTST 231
++ + L V L+++EA+ + + +KWPND+Y KV G+L +
Sbjct: 59 NPKEFENLLQLPLVLGLSVSEALEEITE------IPFSLKWPNDVYFQEKKVSGVLRELS 112
Query: 232 YRTKKFNVSIGIGLNVNNEE 251
K + +GIG+NVN E
Sbjct: 113 ----KDKLIVGIGINVNQRE 128
>pdb|2EJ9|A Chain A, Crystal Structure Of Biotin Protein Ligase From
Methanococcus Jannaschii
Length = 237
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 21/199 (10%)
Query: 141 VCVADVQFKGRGRSKNAWESPKGCLMFSFTI--QMEDGRVVPLLQYVASLALTEAINYVC 198
+ +AD Q G+GR W S +G L FS + ++ + +V+ LL + + + + NYV
Sbjct: 28 IVLADKQNNGKGRWGRVWYSDEGGLYFSMVLDSKLYNPKVINLLVPICIIEVLK--NYVD 85
Query: 199 SRDGLPCLDIKIKWPNDLYL----NGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTT 254
GL K+PND+ + N K+GGIL T T + + IGIG+NVNN+
Sbjct: 86 KELGL-------KFPNDIMVKVNDNYKKLGGIL---TELTDDYMI-IGIGINVNNQIRNE 134
Query: 255 CLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEEL--YYKTWLHSGQR 312
+ + + + ++++ F FE++ + N+ E L Y K + G++
Sbjct: 135 IREIAISLKEITGKELDKVEILSNFLKTFESYLEKLKNKEIDDYEILKKYKKYSITIGKQ 194
Query: 313 VIVQEKNEDQVVENVVTIQ 331
V + N + + V I
Sbjct: 195 VKILLSNNEIITGKVYDID 213
>pdb|3RIR|A Chain A, Crystal Strucrture Of Biotin Protein Ligase From S. Aureus
pdb|3RKW|A Chain A, Structural Characterisation Of Staphylococcus Aureus
Biotin Protein Ligase
pdb|3RKX|A Chain A, Structural Characterisation Of Staphylococcus Aureus
Biotin Protein Ligase
pdb|3RKY|A Chain A, Structural Characterisation Of Staphylococcus Aureus
Biotin Protein Ligase
Length = 323
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 14/167 (8%)
Query: 143 VADVQFKGRGRSKNAWESPKG-CLMFSFTIQMEDG-RVVPLLQYVASLALTEAINYVCSR 200
++D Q KGRGR W S KG L S ++ ++ +L + +AI + S+
Sbjct: 112 LSDEQTKGRGRFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLFIALGIRDAIQHF-SQ 170
Query: 201 DGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSI-GIGLN----VNNEEPTTC 255
D ++K+KWPND+Y++ KV G L I GIG+N + N + +
Sbjct: 171 D-----EVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINLTQQLENFDESIR 225
Query: 256 LNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELY 302
A +L D + R + + E Y+ F+ F + E Y
Sbjct: 226 HRATSIQLHDKN-KLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEY 271
>pdb|4DQ2|A Chain A, Structure Of Staphylococcus Aureus Biotin Protein Ligase
In Complex With Biotinol-5'-Amp
Length = 328
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 14/167 (8%)
Query: 143 VADVQFKGRGRSKNAWESPKG-CLMFSFTIQMEDG-RVVPLLQYVASLALTEAINYVCSR 200
++D Q KGRGR W S KG L S ++ ++ +L + +AI + S+
Sbjct: 111 LSDEQTKGRGRFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLFIALGIRDAIQHF-SQ 169
Query: 201 DGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSI-GIGLN----VNNEEPTTC 255
D ++K+KWPND+Y++ KV G L I GIG+N + N + +
Sbjct: 170 D-----EVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINLTQQLENFDESIR 224
Query: 256 LNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELY 302
A +L D + R + + E Y+ F+ F + E Y
Sbjct: 225 HRATSIQLHDKN-KLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEY 270
>pdb|3V7R|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Inhibitor
pdb|3V8J|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase
pdb|3V8K|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Biotin
pdb|3V8L|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Biotinyl-5'-Amp
Length = 329
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 14/167 (8%)
Query: 143 VADVQFKGRGRSKNAWESPKG-CLMFSFTIQMEDG-RVVPLLQYVASLALTEAINYVCSR 200
++D Q KGRGR W S KG L S ++ ++ +L + +AI + S+
Sbjct: 118 LSDEQTKGRGRFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLFIALGIRDAIQHF-SQ 176
Query: 201 DGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSI-GIGLN----VNNEEPTTC 255
D ++K+KWPND+Y++ KV G L I GIG+N + N + +
Sbjct: 177 D-----EVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINLTQQLENFDESIR 231
Query: 256 LNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELY 302
A +L D + R + + E Y+ F+ F + E Y
Sbjct: 232 HRATSIQLHDKN-KLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEY 277
>pdb|3V7C|A Chain A, Cystal Structure Of Sabpl In Complex With Inhibitor
pdb|3V7S|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein
Ligase In Complex With Inhibitor 0364
Length = 329
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 14/167 (8%)
Query: 143 VADVQFKGRGRSKNAWESPKG-CLMFSFTIQMEDG-RVVPLLQYVASLALTEAINYVCSR 200
++D Q KGRGR W S KG L S ++ ++ +L + +AI + S+
Sbjct: 112 LSDEQTKGRGRFNRHWSSSKGQGLWMSVVLRPNVAFSMISKFNLFIALGIRDAIQHF-SQ 170
Query: 201 DGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSI-GIGLN----VNNEEPTTC 255
D ++K+KWPND+Y++ KV G L I GIG+N + N + +
Sbjct: 171 D-----EVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINLTQQLENFDESIR 225
Query: 256 LNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELY 302
A +L D + R + + E Y+ F+ F + E Y
Sbjct: 226 HRATSIQLHDKN-KLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEY 271
>pdb|3RUX|A Chain A, Crystal Structure Of Biotin-Protein Ligase Bira From
Mycobacterium Tuberculosis In Complex With An
Acylsulfamide Bisubstrate Inhibitor
pdb|3RUX|B Chain B, Crystal Structure Of Biotin-Protein Ligase Bira From
Mycobacterium Tuberculosis In Complex With An
Acylsulfamide Bisubstrate Inhibitor
Length = 270
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 139 GAVCVADVQFKGRGRSKNAWES-PKGCLMFSFTIQMEDG--RVVPLLQYVASLALTEAIN 195
G V +A+ Q GRGR W + + ++ S +++ D + L A LA+ +++
Sbjct: 59 GVVLIAEHQTAGRGRHGRGWAATARAQIILSVGVRVVDVPVQAWGWLSLAAGLAVLDSVA 118
Query: 196 YVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNN 249
+ + +P + +KWPND+ G K+ GIL + F V +G+GLNV
Sbjct: 119 PLIA---VPPAETGLKWPNDVLARGGKLAGILAEV---AQPF-VVLGVGLNVTQ 165
>pdb|3L1A|A Chain A, Structural Ordering Of Disordered Ligand Binding Loops Of
Biotin Protein Ligase Into Active Conformations As A
Consequence Of Dehydration
pdb|3L1A|B Chain B, Structural Ordering Of Disordered Ligand Binding Loops Of
Biotin Protein Ligase Into Active Conformations As A
Consequence Of Dehydration
pdb|3L2Z|A Chain A, Crystal Structure Of Hydrated Biotin Protein Ligase From
M. Tuberculosis
pdb|3L2Z|B Chain B, Crystal Structure Of Hydrated Biotin Protein Ligase From
M. Tuberculosis
Length = 266
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 139 GAVCVADVQFKGRGRSKNAWES-PKGCLMFSFTIQMEDG--RVVPLLQYVASLALTEAIN 195
G V +A+ Q GRGR W + + ++ S +++ D + L A LA+ +++
Sbjct: 55 GVVLIAEHQTAGRGRHGRGWAATARAQIILSVGVRVVDVPVQAWGWLSLAAGLAVLDSVA 114
Query: 196 YVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNN 249
+ + +P + +KWPND+ G K+ GIL + F V +G+GLNV
Sbjct: 115 PLIA---VPPAETGLKWPNDVLARGGKLAGILAEV---AQPF-VVLGVGLNVTQ 161
>pdb|2CGH|A Chain A, Crystal Structure Of Biotin Ligase From Mycobacterium
Tuberculosis
pdb|2CGH|B Chain B, Crystal Structure Of Biotin Ligase From Mycobacterium
Tuberculosis
Length = 268
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 139 GAVCVADVQFKGRGRSKNAWES-PKGCLMFSFTIQMEDG--RVVPLLQYVASLALTEAIN 195
G V +A+ Q GRGR W + + ++ S +++ D + L A LA+ +++
Sbjct: 57 GVVLIAEHQTAGRGRHGRGWAATARAQIILSVGVRVVDVPVQAWGWLSLAAGLAVLDSVA 116
Query: 196 YVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNN 249
+ + +P + +KWPND+ G K+ GIL + F V +G+GLNV
Sbjct: 117 PLIA---VPPAETGLKWPNDVLARGGKLAGILAEV---AQPF-VVLGVGLNVTQ 163
>pdb|3ONK|A Chain A, Yeast Ent3_enth Domain
pdb|3ONL|A Chain A, Yeast Ent3_enth-Vti1p_habc Complex Structure
pdb|3ONL|B Chain B, Yeast Ent3_enth-Vti1p_habc Complex Structure
Length = 150
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 249 NEEPTTCLNAVLRKLSDSTYQFR-REDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWL 307
N EP + ++ ++S TY FR RE++++ F +F + Q ++ L+ L Y
Sbjct: 21 NNEPWGASSTLMDQISQGTYNFREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLI-K 79
Query: 308 HSGQRVIVQEKNEDQVVENVVTIQGLTSSG 337
H +R I +N ++ + T + S G
Sbjct: 80 HGSERFIDDTRNSINLIRILETFHYIDSQG 109
>pdb|2CF5|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol
Dehydrogenases, Atcad5
pdb|2CF6|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol
Dehydrogenases Atcad5
Length = 357
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 25/58 (43%)
Query: 198 CSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTC 255
C RD KI ND+Y+NG G +T +KF V I G+ V P C
Sbjct: 106 CERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPLLC 163
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 277 AAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSS 336
+ F++KF + Y I LEELYYK + Q + + N D V V + L
Sbjct: 653 SQFYDKFNSRYSISI-----ILEELYYKIPSYKNQLIWQSQNNADFFVRFVARM--LNDL 705
Query: 337 GYLLAIGDDNQMCELHPDGNSLD 359
+LL G N + E+H N LD
Sbjct: 706 TFLLDEGLSN-LAEVHNIQNELD 727
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 968
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 277 AAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSS 336
+ F++KF + Y I LEELYYK + Q + + N D V V + L
Sbjct: 639 SQFYDKFNSRYSISI-----ILEELYYKIPSYKNQLIWQSQNNADFFVRFVARM--LNDL 691
Query: 337 GYLLAIGDDNQMCELHPDGNSLD 359
+LL G N + E+H N LD
Sbjct: 692 TFLLDEGLSN-LAEVHNIQNELD 713
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 277 AAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSS 336
+ F++KF + Y I LEELYYK + Q + + N D V V + L
Sbjct: 653 SQFYDKFNSRYSISI-----ILEELYYKIPSYKNQLIWQSQNNADFFVRFVA--RXLNDL 705
Query: 337 GYLLAIGDDNQMCELHPDGNSLD 359
+LL G N + E+H N LD
Sbjct: 706 TFLLDEGLSN-LAEVHNIQNELD 727
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,948,550
Number of Sequences: 62578
Number of extensions: 402092
Number of successful extensions: 962
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 29
length of query: 370
length of database: 14,973,337
effective HSP length: 100
effective length of query: 270
effective length of database: 8,715,537
effective search space: 2353194990
effective search space used: 2353194990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)