Query 017518
Match_columns 370
No_of_seqs 289 out of 1349
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 15:43:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017518.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017518hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkx_A Biotin-[acetyl-COA-carb 100.0 4.2E-60 1.4E-64 463.3 25.4 254 91-358 64-323 (323)
2 2dxu_A Biotin--[acetyl-COA-car 100.0 3E-59 1E-63 438.5 24.9 229 101-359 2-233 (235)
3 2eay_A Biotin [acetyl-COA-carb 100.0 3.2E-58 1.1E-62 431.0 21.6 223 109-359 2-231 (233)
4 3rux_A BIRA bifunctional prote 100.0 4.2E-57 1.4E-61 431.9 23.1 245 91-357 12-267 (270)
5 2ej9_A Putative biotin ligase; 100.0 1E-56 3.6E-61 421.7 24.2 223 111-359 2-236 (237)
6 1bia_A BIRA bifunctional prote 100.0 6.8E-56 2.3E-60 433.1 28.3 249 92-359 65-317 (321)
7 3bfm_A Biotin protein ligase-l 100.0 1E-45 3.6E-50 346.3 21.7 219 109-358 11-233 (235)
8 2qhs_A Lipoyltransferase; glob 98.2 3.1E-05 1E-09 72.0 14.4 118 150-287 92-225 (237)
9 1w66_A Lipoyltransferase; lipo 97.1 0.014 4.7E-07 53.9 14.8 121 150-287 75-213 (232)
10 2p5i_A BH3822 protein; PFAM030 96.0 0.066 2.3E-06 50.6 12.5 127 150-287 89-247 (288)
11 2c8m_A Lipoate-protein ligase 96.0 0.12 4.1E-06 48.0 13.8 128 150-288 71-223 (262)
12 2p0l_A Lipoate-protein ligase 95.5 0.19 6.4E-06 47.5 13.2 129 150-289 86-248 (288)
13 1vqz_A Lipoate-protein ligase, 95.4 0.12 4.3E-06 50.0 11.9 124 150-288 79-222 (341)
14 2e5a_A Lipoyltransferase 1; li 95.0 0.095 3.2E-06 50.9 9.8 125 150-288 72-214 (347)
15 3a7r_A Lipoate-protein ligase 94.9 0.26 8.8E-06 47.6 12.4 123 150-288 69-212 (337)
16 2ddz_A 190AA long hypothetical 77.6 9.4 0.00032 33.7 8.3 104 164-288 66-177 (190)
17 1d3b_B Protein (small nuclear 56.6 21 0.00071 27.3 5.6 34 308-344 12-45 (91)
18 3s6n_G Small nuclear ribonucle 55.2 24 0.00084 26.0 5.6 33 308-343 12-44 (76)
19 1h64_1 SnRNP SM-like protein; 54.3 28 0.00095 25.5 5.8 34 308-344 12-45 (75)
20 1i4k_A Putative snRNP SM-like 52.6 32 0.0011 25.3 5.9 33 308-343 12-44 (77)
21 4emh_A Probable U6 snRNA-assoc 52.3 74 0.0025 25.2 8.3 32 309-343 25-56 (105)
22 4emk_B U6 snRNA-associated SM- 50.4 33 0.0011 25.1 5.7 32 309-343 13-44 (75)
23 1th7_A SnRNP-2, small nuclear 48.3 80 0.0027 23.3 8.1 32 309-343 18-49 (81)
24 1mgq_A SM-like protein; LSM, R 48.1 38 0.0013 25.4 5.8 32 309-343 24-55 (83)
25 1ljo_A Archaeal SM-like protei 45.9 46 0.0016 24.4 5.9 33 308-343 13-46 (77)
26 4emk_A U6 snRNA-associated SM- 44.8 43 0.0015 26.0 5.7 32 309-343 29-60 (94)
27 4emk_C U6 snRNA-associated SM- 43.7 46 0.0016 26.7 5.9 34 308-344 31-64 (113)
28 3bw1_A SMX4 protein, U6 snRNA- 43.5 39 0.0014 26.1 5.3 34 308-344 18-51 (96)
29 1i8f_A Putative snRNP SM-like 42.8 41 0.0014 25.0 5.2 34 308-344 19-52 (81)
30 1d3b_A Protein (small nuclear 42.4 98 0.0033 22.6 8.4 33 308-343 13-45 (75)
31 3s6n_F Small nuclear ribonucle 40.4 57 0.002 24.7 5.7 33 309-344 15-47 (86)
32 1n9r_A SMF, small nuclear ribo 40.3 57 0.002 25.1 5.8 35 308-344 29-63 (93)
33 3kdf_A Replication protein A 1 40.1 58 0.002 26.4 6.0 35 308-353 20-55 (121)
34 4emg_A Probable U6 snRNA-assoc 36.4 71 0.0024 24.6 5.7 33 309-344 18-50 (93)
35 3pgw_B SM B; protein-RNA compl 35.5 46 0.0016 30.3 5.1 33 308-343 12-44 (231)
36 1kq1_A HFQ, HOST factor for Q 28.8 1.8E+02 0.0062 21.7 7.4 45 298-347 7-51 (77)
37 3ahu_A Protein HFQ; SM-like mo 27.3 2E+02 0.0068 21.6 6.9 46 298-348 11-56 (78)
38 1b34_A Protein (small nuclear 27.0 2.4E+02 0.0082 22.5 8.1 33 308-343 10-42 (119)
39 2y9a_D Small nuclear ribonucle 26.7 2.6E+02 0.0088 22.7 8.0 33 308-343 13-45 (126)
40 2fwk_A U6 snRNA-associated SM- 25.2 54 0.0019 26.5 3.4 33 309-344 37-69 (121)
41 2pi2_E Replication protein A 1 25.0 1.4E+02 0.0047 24.9 6.0 34 308-352 41-75 (142)
42 3sb2_A Protein HFQ; SM-like, R 24.8 2.2E+02 0.0076 21.4 7.1 45 298-348 8-52 (79)
43 1ycy_A Conserved hypothetical 23.7 2.1E+02 0.0072 20.7 6.7 58 297-360 5-68 (71)
44 2ylb_A Protein HFQ; RNA-bindin 23.6 2.1E+02 0.0071 21.2 6.1 41 299-343 10-50 (74)
45 1y96_A Gemin6, SIP2, GEM-assoc 23.3 2.5E+02 0.0086 21.4 7.2 34 307-343 14-48 (86)
46 4gop_A Putative uncharacterize 23.2 1.4E+02 0.0047 23.8 5.4 33 308-352 16-48 (114)
47 2hbp_A Cytoskeleton assembly c 22.7 1.7E+02 0.006 21.4 5.3 36 316-354 9-44 (68)
48 1b34_B Protein (small nuclear 21.8 1.6E+02 0.0056 23.4 5.7 33 309-344 38-70 (118)
49 2jz2_A SSL0352 protein; SH3-li 21.5 28 0.00097 25.3 0.8 26 204-230 4-38 (66)
50 1m5q_A SMAP3, small nuclear ri 21.3 1.8E+02 0.0061 23.8 5.9 34 308-344 8-41 (130)
51 3qii_A PHD finger protein 20; 20.2 2.9E+02 0.01 21.0 6.8 49 304-355 19-67 (85)
No 1
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=100.00 E-value=4.2e-60 Score=463.28 Aligned_cols=254 Identities=18% Similarity=0.285 Sum_probs=208.2
Q ss_pred CCCCCHHHHHhhcccccCCceEEEcccCCCHHHHHHhccccccCCCCceeEEEeCcccCcccCCCCeeeccCC-ceeEEE
Q 017518 91 QESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSF 169 (370)
Q Consensus 91 ~~~f~~~~~~~~L~t~~~g~~l~~~~~v~STN~~a~~~~~~~~~~~~~gtvviA~~QTaGRGR~GR~W~Sp~G-~L~fS~ 169 (370)
++.++++.+...|+|..+|+.++|+++++|||++| +++ ..+.++|++|+|++||+||||+||+|+||+| +||||+
T Consensus 64 ~~~l~~~~i~~~l~~~~~g~~i~~~~~~~STn~~a-~~~---~~g~~~g~vv~A~~QTaGRGR~GR~W~Sp~G~~L~~S~ 139 (323)
T 3rkx_A 64 PDIWYQGIIDQYTKSSALFDFSEVYDSIDSTQLAA-KKS---LVGNQSSFFILSDEQTKGRGRFNRHWSSSKGQGLWMSV 139 (323)
T ss_dssp CSSCCHHHHHHHHHTCSSCSEEEEEEEESCHHHHH-HHH---TTTCCCCEEEEEEEEC------------CTTCEEEEEE
T ss_pred cccCCHHHHHhhcccccCCceEEEEcCCCCHHHHH-HHH---hcCCCCCEEEEECcccCCCCCCCCeeeCCCCCCEEEEE
Confidence 47799999999999999999999999999999999 643 2457899999999999999999999999999 899999
Q ss_pred eeecc-CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCcceeEecCcEEECCEEEEEEeeeeeecCCcc-eEEEEeccCC
Q 017518 170 TIQME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKF-NVSIGIGLNV 247 (370)
Q Consensus 170 ~l~~~-~~~~~~~ls~~~~lAV~~aL~~~~~~~g~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~~-~vvIGIGINv 247 (370)
+++|+ ++..++.+++++|+||++||++++ +.+++||||||||++||||||||+|+..+.+.. ++||||||||
T Consensus 140 ~l~p~~~~~~~~~lsl~~avAv~~al~~~~------~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~~~~~vViGIGiNv 213 (323)
T 3rkx_A 140 VLRPNVAFSMISKFNLFIALGIRDAIQHFS------QDEVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINL 213 (323)
T ss_dssp EECCCCCTTSGGGHHHHHHHHHHHHHHTTC------SSCEEEETTTEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEEC
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHHHhc------CCceEEeCCCeEEECCEEEEEEEeEeeeCCCCCCEEEEEEEEEe
Confidence 99876 456788999999999999999874 357999999999999999999999998876654 6899999999
Q ss_pred CCC---CCcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECCccEEE
Q 017518 248 NNE---EPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVV 324 (370)
Q Consensus 248 n~~---~p~~~l~~~~~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~ 324 (370)
|+. .|....+.+++.....+..++|++|++.++++|+.+|+.|.+.||.++.++|++++++.|++|++..+++. +
T Consensus 214 ~~~~~~~p~~l~~~atsL~~~~g~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~~--~ 291 (323)
T 3rkx_A 214 TQQLENFDESIRHRATSIQLHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYNAASNIWNRTLLFTENDKQ--F 291 (323)
T ss_dssp SCCGGGSCTTTGGGBCCSGGGCSSCCCHHHHHHHHHHHHHHHHHHHHHSCGGGTHHHHHHTBSCSSSCEEEECC-CE--E
T ss_pred cCCcccCCcccCcceeeHhhhhCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCEEEEEECCeE--E
Confidence 983 33221111112222346789999999999999999999999999999999999999999999999876543 3
Q ss_pred EeeEEEEEECCCceEEEEeCCCcEEEEcCCCeeE
Q 017518 325 ENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSL 358 (370)
Q Consensus 325 ~~~G~i~GId~~G~L~v~~~dG~~~~v~~dg~Sf 358 (370)
+ |++.|||++|+|+|++++|+++.+.+|++|+
T Consensus 292 ~--G~~~gId~~G~Llv~~~~G~~~~~~sGevsl 323 (323)
T 3rkx_A 292 K--GQAIDLDYDGYLIVRDEAGESHRLISADIDF 323 (323)
T ss_dssp E--EEEEEECTTSCEEEEETTSCEEEESSCEEEC
T ss_pred E--EEEEEECCCCEEEEEECCCCEEEEEEeeEEC
Confidence 4 9999999999999999999999999999874
No 2
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=100.00 E-value=3e-59 Score=438.46 Aligned_cols=229 Identities=26% Similarity=0.424 Sum_probs=201.1
Q ss_pred hhcccccCCceEEEcccCCCHHHHHHhccccccCCCCceeEEEeCcccCcccCCCCeeeccCCceeEEEeeecc-CCCCc
Q 017518 101 NSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQME-DGRVV 179 (370)
Q Consensus 101 ~~L~t~~~g~~l~~~~~v~STN~~a~~~~~~~~~~~~~gtvviA~~QTaGRGR~GR~W~Sp~G~L~fS~~l~~~-~~~~~ 179 (370)
..|+|+.+|+.++++++++|||+++++ . +.++|++|+|++||+||||+||+|+||+|+||||++++|+ ++..+
T Consensus 2 ~~l~t~~~g~~i~~~~~~~STn~~~~~----~--~~~~~~vv~A~~QtaGRGR~Gr~W~Sp~G~l~~S~~l~p~~~~~~~ 75 (235)
T 2dxu_A 2 LGLKTSIIGRRVIYFQEITSTNEFAKT----S--YLEEGTVIVADKQTMGHGALNRKWESPEGGLWLSIVLSPKVPQKDL 75 (235)
T ss_dssp CCCCCSSTTSEEEEESSBSCHHHHHHH----S--CCCTTCEEEESCBSSCBCGGGCBCCCCTTSEEEEEEECCCSCGGGG
T ss_pred CCcccccCCCeEEEECCCCCHHHHHHh----c--CCCCCeEEEECccccCcCCCcCcccCCCCCeEEEEEeecCCCHHHH
Confidence 367899999999999999999999998 2 5689999999999999999999999999999999999875 44567
Q ss_pred chhHHHHHHHHHHHHHHhhhcCCCCCCcceeEecCcEEECCEEEEEEeeeeeecCCcceEEEEeccCCCCCCC--cchHH
Q 017518 180 PLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEP--TTCLN 257 (370)
Q Consensus 180 ~~ls~~~~lAV~~aL~~~~~~~g~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~~~vvIGIGINvn~~~p--~~~l~ 257 (370)
+++++++|+||++||+++ + .+++||||||||++||||||||+|+ ...++||||||||++..| .+++.
T Consensus 76 ~~l~l~~alAv~~al~~~----~---~~~~iKWPNDi~~~gkKl~GIL~E~----~~~~vViGiGiNv~~~~p~~atsL~ 144 (235)
T 2dxu_A 76 PKIVFLGAVGVVETLKEF----S---IDGRIKWPNDVLVNYKKIAGVLVEG----KGDKIVLGIGLNVNNKVPNGATSMK 144 (235)
T ss_dssp GGHHHHHHHHHHHHHHHT----T---CCCEEETTTEEEETTEEEEEEEEEE----CSSCEEEEEEECSSSCCCTTBCCHH
T ss_pred HHHHHHHHHHHHHHHHHh----C---CCeeeeCCCEEEECCEEEEEEEEee----cCCEEEEEEEEEeCCCCCCchhhHH
Confidence 899999999999999986 2 5799999999999999999999998 234689999999998645 34554
Q ss_pred HHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEECCCc
Q 017518 258 AVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSG 337 (370)
Q Consensus 258 ~~~~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G 337 (370)
.. .+..++|++|++.++++|+++|+.|. +||++++++|+++++ .|++|++..+++ ++ |++.|||++|
T Consensus 145 ~~------~~~~~~r~~ll~~ll~~l~~~~~~~~-~g~~~~~~~~~~~~~-~g~~V~v~~~~~---~~--G~~~gId~~G 211 (235)
T 2dxu_A 145 LE------LGSEVPLLSVFRSLITNLDRLYLNFL-KNPMDILNLVRDNMI-LGVRVKILGDGS---FE--GIAEDIDDFG 211 (235)
T ss_dssp HH------HTSCCCHHHHHHHHHHHHHHHHHHHH-HCTTHHHHHHHHHBC-CSSEEEC----C---CE--EEEEEECTTS
T ss_pred Hh------hCCCCCHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhcc-cCCeEEEEECCe---EE--EEEEEECCCC
Confidence 32 24578999999999999999999999 899999999999999 999999987654 23 8999999999
Q ss_pred eEEEEeCCCcEEEEcCCCeeEE
Q 017518 338 YLLAIGDDNQMCELHPDGNSLD 359 (370)
Q Consensus 338 ~L~v~~~dG~~~~v~~dg~Sfd 359 (370)
+|+|++++|+++.+++|++++.
T Consensus 212 ~L~v~~~~G~~~~~~~Gev~~~ 233 (235)
T 2dxu_A 212 RLIIRLDSGEVKKVIYGDVSLR 233 (235)
T ss_dssp CEEEECTTSCEEEECCSSCCCE
T ss_pred EEEEEECCCCEEEEEeeEEEEe
Confidence 9999999999999999999875
No 3
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=100.00 E-value=3.2e-58 Score=430.95 Aligned_cols=223 Identities=28% Similarity=0.461 Sum_probs=183.7
Q ss_pred CceEEEcccCCCHHHHHHhccccccCCCCceeEEEeCcccCcccCCCCeeeccCCceeEEEeeeccCCCCcchhHHHHHH
Q 017518 109 GRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASL 188 (370)
Q Consensus 109 g~~l~~~~~v~STN~~a~~~~~~~~~~~~~gtvviA~~QTaGRGR~GR~W~Sp~G~L~fS~~l~~~~~~~~~~ls~~~~l 188 (370)
...++|+++++|||+++++ .+.++|++|+|++||+||||+||+|+||+|+||||++++|.++..++++++++|+
T Consensus 2 ~~~i~~~~~~~STn~~~~~------~~~~~g~vv~A~~QTaGRGR~Gr~W~Sp~G~l~~S~~l~p~~~~~~~~lsl~~~l 75 (233)
T 2eay_A 2 FKNLIWLKEVDSTQERLKE------WNVSYGTALVADRQTKGRGRLGRKWLSQEGGLYFSFLLNPKEFENLLQLPLVLGL 75 (233)
T ss_dssp CCEEEEEEEBSCHHHHHHH------SCCCTTEEEEESCBCC------------CCEEEEEEEECTTTCCCTTHHHHHHHH
T ss_pred CccEEEEcccCCHHHHHHh------cCCCCCeEEEECCcCCCCCCCCCeeeCCCCCcEEEEEEcCCCHHHHHHHHHHHHH
Confidence 3578999999999999987 3468899999999999999999999999999999999988755678899999999
Q ss_pred HHHHHHHHhhhcCCCCCCcceeEecCcEEECCEEEEEEeeeeeecCCcceEEEEeccCCCC-CCCc------chHHHHHH
Q 017518 189 ALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNN-EEPT------TCLNAVLR 261 (370)
Q Consensus 189 AV~~aL~~~~~~~g~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~~~vvIGIGINvn~-~~p~------~~l~~~~~ 261 (370)
||++||++++ +.+++||||||||++||||||||+|+..+.+ ||||||||++ +.|. +++..
T Consensus 76 Av~~al~~~~------~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~----ViGIGiNv~~~~~p~~~~~~atsL~~--- 142 (233)
T 2eay_A 76 SVSEALEEIT------EIPFSLKWPNDVYFQEKKVSGVLCELSKDKL----IVGIGINVNQREIPEEIKDRATTLYE--- 142 (233)
T ss_dssp HHHHHHHHHH------CCCCEEETTTEEEETTEEEEEEEEEEETTEE----EEEEEEECSCCCCCTTTTTTBCCHHH---
T ss_pred HHHHHHHHhc------CCCccEeCcceEEECCeEEEEEEEEeecCCC----EEEEEEEcccccCcchhhhhhhhhHH---
Confidence 9999999975 2579999999999999999999999876532 8999999996 3342 33332
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEECCCceEEE
Q 017518 262 KLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLA 341 (370)
Q Consensus 262 ~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v 341 (370)
..+..++|++|++.++++|+.+|..|.++||.+++++|++++++.|++|++..+++ ++ |++.|||++|+|+|
T Consensus 143 ---~~~~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~---~~--G~~~gId~~G~L~v 214 (233)
T 2eay_A 143 ---ITGKDWDRKEVLLKVLKRISENLKKFKEKSFKEFKGKIESKMLYLGEEVKLLGEGK---IT--GKLVGLSEKGGALI 214 (233)
T ss_dssp ---HHSSCCCHHHHHHHHHHHHHHHHHHHHHSCGGGTHHHHHHHBTTTTSEEEETTEEE---EE--EEEEEECTTSCEEE
T ss_pred ---hHCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHhhcccCCEEEEEECCe---EE--EEEEEECCCCeEEE
Confidence 12467899999999999999999999999999999999999999999999975433 33 89999999999999
Q ss_pred EeCCCcEEEEcCCCeeEE
Q 017518 342 IGDDNQMCELHPDGNSLD 359 (370)
Q Consensus 342 ~~~dG~~~~v~~dg~Sfd 359 (370)
++++|+ +.+.+|++++.
T Consensus 215 ~~~~G~-~~~~~Gev~~r 231 (233)
T 2eay_A 215 LTEEGI-KEILSGEFSLR 231 (233)
T ss_dssp EETTEE-EEECSCCEEEC
T ss_pred EECCCe-EEEEEeEEEEe
Confidence 999998 99999999874
No 4
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=100.00 E-value=4.2e-57 Score=431.94 Aligned_cols=245 Identities=21% Similarity=0.238 Sum_probs=207.2
Q ss_pred CCCCCHHHHHhhc-ccccCCceEEEcccCCCHHHHHHhccccccCCC-CceeEEEeCcccCcccCCCCeeeccCC-ceeE
Q 017518 91 QESFDVELFMNSL-ATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCEL-PVGAVCVADVQFKGRGRSKNAWESPKG-CLMF 167 (370)
Q Consensus 91 ~~~f~~~~~~~~L-~t~~~g~~l~~~~~v~STN~~a~~~~~~~~~~~-~~gtvviA~~QTaGRGR~GR~W~Sp~G-~L~f 167 (370)
.+.+|++.+...| .+...++.++++++++|||+++++++. .+. ++|++|+|++||+||||+||.|+||+| +|||
T Consensus 12 ~~~L~~~~i~~~l~~~~~~~~~i~~~~~~~STN~~~~~~~~---~g~~~~g~vv~A~~QTaGRGR~GR~W~Sp~G~~L~~ 88 (270)
T 3rux_A 12 RPPLDERSLRDQLIGAGSGWRQLDVVAQTGSTNADLLARAA---SGADIDGVVLIAEHQTAGRGRHGRGWAATARAQIIL 88 (270)
T ss_dssp CCCCCHHHHHHHHSSTTCCCCEEEEEEEESCHHHHHHHHHH---TTCCCBTEEEEEEEESSEECGGGCEECCCTTSEEEE
T ss_pred CCCCCHHHHHHhhccccccCceEEEEccCCcHHHHHHHHHh---cCCCCCCEEEEECccCCCCCCCCCeeeCCCCCCeEE
Confidence 3669999999999 456667799999999999999998532 344 899999999999999999999999999 8999
Q ss_pred EEeeecc--CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCcceeEecCcEEECCEEEEEEeeeeeecCCcceEEEEecc
Q 017518 168 SFTIQME--DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGL 245 (370)
Q Consensus 168 S~~l~~~--~~~~~~~ls~~~~lAV~~aL~~~~~~~g~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~~~vvIGIGI 245 (370)
|++++|+ +...++++++++|+||++||+.++... +.+++||||||||++||||||||+|... .++||||||
T Consensus 89 S~~l~~~~~~~~~~~~lsl~~~lAv~~aL~~~~~~~---~~~~~iKWPNDI~~~gkKl~GIL~E~~~----~~vViGIGi 161 (270)
T 3rux_A 89 SVGVRVVDVPVQAWGWLSLAAGLAVLDSVAPLIAVP---PAETGLKWPNDVLARGGKLAGILAEVAQ----PFVVLGVGL 161 (270)
T ss_dssp EEEEECTTSCGGGTHHHHHHHHHHHHHHHGGGSSSC---CSSCEEETTTEEEETTEEEEEEEEEEET----TEEEEEEEE
T ss_pred EEEEccCCCChHHHHHHHHHHHHHHHHHHHHhcccC---CCceEEECCCeEEECCEEEEEEEEEeeC----CeEEEEEEE
Confidence 9999986 345688999999999999999553211 3679999999999999999999999873 379999999
Q ss_pred CCCCCC------CcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECC
Q 017518 246 NVNNEE------PTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKN 319 (370)
Q Consensus 246 Nvn~~~------p~~~l~~~~~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~ 319 (370)
|||+.. +.+++.. ..+. .+|++|++.++++|+.+|+.|.+. |.+++++|+++++++|++|++..++
T Consensus 162 Nv~~~~~~~~~~~atSL~~------~~~~-~~r~~ll~~ll~~l~~~~~~~~~~-~~~~~~~~~~~~~~~g~~V~v~~~~ 233 (270)
T 3rux_A 162 NVTQAPEEVDPDATSLLDL------GVAA-PDRNRIASRLLRELEARIIQWRNA-NPQLAADYRARSLTIGSRVRVELPG 233 (270)
T ss_dssp ESSCCHHHHCTTBCCTGGG------TCSS-CCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHTBSSTTSEEEEECTT
T ss_pred eccCCccccCchhhccHHH------hcCC-CCHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHhcccCCEEEEEECC
Confidence 999852 2344431 2233 499999999999999999999887 9999999999999999999998654
Q ss_pred ccEEEEeeEEEEEECCCceEEEEeCCCcEEEEcCCCee
Q 017518 320 EDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNS 357 (370)
Q Consensus 320 ~~~~~~~~G~i~GId~~G~L~v~~~dG~~~~v~~dg~S 357 (370)
++ .++ |++.|||++|+|+|++++| ++.+.+|+++
T Consensus 234 ~~-~~~--G~~~gId~~G~L~v~~~~g-~~~i~sGeV~ 267 (270)
T 3rux_A 234 GQ-DVV--GIARDIDDQGRLCLDVGGR-TVVVSAGDVV 267 (270)
T ss_dssp SC-EEE--EEEEEECTTSCEEEEETTE-EEEESSCEEE
T ss_pred Ce-EEE--EEEEEECCCCeEEEEECCC-EEEEEEEEEE
Confidence 43 234 9999999999999998866 6889888875
No 5
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1e-56 Score=421.70 Aligned_cols=223 Identities=21% Similarity=0.330 Sum_probs=192.9
Q ss_pred eEEEcccCCCHHHHHHhccccccCCCCceeEEEeCcccCcccCCCCeeeccCCceeEEEeeeccCCCCcchhHHHHHHHH
Q 017518 111 LLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLAL 190 (370)
Q Consensus 111 ~l~~~~~v~STN~~a~~~~~~~~~~~~~gtvviA~~QTaGRGR~GR~W~Sp~G~L~fS~~l~~~~~~~~~~ls~~~~lAV 190 (370)
.++|+++++|||+++++++. .+.+ |++|+|++||+||||+||.|+||+|+||||++++|.+... +++++++|+||
T Consensus 2 ~i~~~~~~~STn~~~~~~~~---~~~~-g~vv~A~~QTaGRGR~Gr~W~Sp~G~l~~S~~l~p~~~~~-~~l~l~~~lAv 76 (237)
T 2ej9_A 2 EIIHLSEIDSTNDYAKELAK---EGKR-NFIVLADKQNNGKGRWGRVWYSDEGGLYFSMVLDSKLYNP-KVINLLVPICI 76 (237)
T ss_dssp EEEEESCBSCHHHHHHHHHH---TTCC-SEEEEESCBSSCBCGGGCBCCCCTTSEEEEEEEETTSSCH-HHHHHHHHHHH
T ss_pred cEEEEeeCCCHHHHHHHHHh---CCCC-CEEEEECccCCCCCCCCCeeeCCCCCeEEEeEEccccCCH-HHHHHHHHHHH
Confidence 58899999999999998542 3456 9999999999999999999999999999999999732222 88999999999
Q ss_pred HHHHHHhhhcCCCCCCcceeEecCcEEECC----EEEEEEeeeeeecCCcceEEEEeccCCCCCCCc------chHHHHH
Q 017518 191 TEAINYVCSRDGLPCLDIKIKWPNDLYLNG----IKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPT------TCLNAVL 260 (370)
Q Consensus 191 ~~aL~~~~~~~g~~~~~v~IKWPNDI~v~g----kKlgGILiE~~~~~~~~~vvIGIGINvn~~~p~------~~l~~~~ 260 (370)
++||++++ +.+++||||||||++| |||||||+|+ ...++||||||||++..|. +++..
T Consensus 77 ~~al~~~~------~~~~~iKWPNDi~~~g~~~~kKl~GIL~E~----~~~~vViGiGiNv~~~~p~~l~~~atsL~~-- 144 (237)
T 2ej9_A 77 IEVLKNYV------DKELGLKFPNDIMVKVNDNYKKLGGILTEL----TDDYMIIGIGINVNNQIRNEIREIAISLKE-- 144 (237)
T ss_dssp HHHHTTTC------CSCEEEETTTEEEEEETTEEEEEEEEEEEE----CSSEEEEEEEECSSSCCCGGGGGTBCCHHH--
T ss_pred HHHHHHhh------CCCcceeCCCEEEECCCcCccEeeEEEEec----CCCeEEEEEEEecCCCCcchhhhhhccHhH--
Confidence 99998864 3579999999999999 9999999998 2347999999999986443 33322
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEECCCce
Q 017518 261 RKLSDSTYQFRREDVIAAFFNKFETFYDTFINQ--GFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGY 338 (370)
Q Consensus 261 ~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~--gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~ 338 (370)
..+..++|++|++.++++|+++|..|.++ ||.+++++|+++++++|++|++..+++. .++ |++.|||++|+
T Consensus 145 ----~~~~~~~r~~ll~~ll~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~~-~~~--G~~~gId~~G~ 217 (237)
T 2ej9_A 145 ----ITGKELDKVEILSNFLKTFESYLEKLKNKEIDDYEILKKYKKYSITIGKQVKILLSNNE-IIT--GKVYDIDFDGI 217 (237)
T ss_dssp ----HHSSCCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHBSSTTCEEEEEETTSC-EEE--EEEEEECSSEE
T ss_pred ----hHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCccCCEEEEEECCCe-EEE--EEEEEECCCCe
Confidence 22457899999999999999999999988 9999999999999999999999987764 133 89999999999
Q ss_pred EEEEeCCCcEEEEcCCCeeEE
Q 017518 339 LLAIGDDNQMCELHPDGNSLD 359 (370)
Q Consensus 339 L~v~~~dG~~~~v~~dg~Sfd 359 (370)
|+ ++++| ++.+.+|++++.
T Consensus 218 L~-~~~~G-~~~~~~Gev~~~ 236 (237)
T 2ej9_A 218 VL-GTEKG-IERIPSGICIHV 236 (237)
T ss_dssp EE-EETTE-EEEEEGGGEEEE
T ss_pred EE-EcCCC-CEEEEEEEEEEe
Confidence 99 99999 899999999874
No 6
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=100.00 E-value=6.8e-56 Score=433.06 Aligned_cols=249 Identities=23% Similarity=0.352 Sum_probs=196.9
Q ss_pred CCCCHHHHHhhcccccCCceEEEcccCCCHHHHHHhccccccCCCCceeEEEeCcccCcccCCCCeeeccCC-ceeEEEe
Q 017518 92 ESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFT 170 (370)
Q Consensus 92 ~~f~~~~~~~~L~t~~~g~~l~~~~~v~STN~~a~~~~~~~~~~~~~gtvviA~~QTaGRGR~GR~W~Sp~G-~L~fS~~ 170 (370)
..++...+...|.+ ..++++++++|||+++++++. ..++|++|+|++||+||||+||+|+||+| +||||++
T Consensus 65 ~~L~~~eI~~~L~~----~~~~~~~~~~STn~~~~~~~~----~~~~g~vv~A~~QtaGRGR~gr~W~Sp~g~~l~~S~~ 136 (321)
T 1bia_A 65 QLLNAKQILGQLDG----GSVAVLPVIDSTNQYLLDRIG----ELKSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMF 136 (321)
T ss_dssp CCCCHHHHHHTCCS----SCEEECSSBSCHHHHHHTTGG----GCCTTCEEEESCBTTC---------CCTTSEEEEEEE
T ss_pred ccCCHHHHHHhcCC----ceEEEEEeeCChhHHHHHHHh----cCCCCcEEEECccCCCCCCCCCcccCCCCCCEEEEEE
Confidence 56999999888865 579999999999999998542 23478999999999999999999999999 7999999
Q ss_pred eecc-CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCcceeEecCcEEECCEEEEEEeeeeeecCCc-ceEEEEeccCCC
Q 017518 171 IQME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKK-FNVSIGIGLNVN 248 (370)
Q Consensus 171 l~~~-~~~~~~~ls~~~~lAV~~aL~~~~~~~g~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~-~~vvIGIGINvn 248 (370)
++++ ++..++++++++|+||++||+++ |. .+++||||||||++||||||||+|+..+.+. .++||||||||+
T Consensus 137 l~~~~~~~~~~~l~l~~~~av~~al~~~----~~--~~~~iKWPNDi~~~g~Kl~GIL~E~~~~~~~~~~~viGiGiNv~ 210 (321)
T 1bia_A 137 WRLEQGPAAAIGLSLVIGIVMAEVLRKL----GA--DKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMA 210 (321)
T ss_dssp EEECC-CCCTHHHHHHHHHHHHHHHHHT----TC--TTCEEETTTEEEETTEEEEEEEEEEEC----CEEEEEEEEEECC
T ss_pred EccCCChHHHhhHHHHHHHHHHHHHHHh----CC--CCccEeCcceeeECCeeEEEEEEEeeecCCCCcEEEEEEEEecC
Confidence 9876 44567899999999999999986 21 3699999999999999999999999876543 479999999999
Q ss_pred CCCC-cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECCccEEEEee
Q 017518 249 NEEP-TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENV 327 (370)
Q Consensus 249 ~~~p-~~~l~~~~~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~ 327 (370)
+..+ ...+......+...+..++|++|++.++++|+.+|..|.++||.+++++|++++++.|+.|++..+++. ++
T Consensus 211 ~~~~~~~~~~~~atsL~~~~~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~~--~~-- 286 (321)
T 1bia_A 211 MRRVEESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPVKLIIGDKE--IF-- 286 (321)
T ss_dssp C-----------CCCTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHTTGGGHHHHHHHBTTTTSEEEEEETTEE--EE--
T ss_pred CCccccchhccccccHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhhcCCEEEEEECCcE--EE--
Confidence 8532 112222212222235678999999999999999999999999999999999999999999999987653 34
Q ss_pred EEEEEECCCceEEEEeCCCcEEEEcCCCeeEE
Q 017518 328 VTIQGLTSSGYLLAIGDDNQMCELHPDGNSLD 359 (370)
Q Consensus 328 G~i~GId~~G~L~v~~~dG~~~~v~~dg~Sfd 359 (370)
|++.|||++|+|+|++++| ++.+.+|++++.
T Consensus 287 G~~~gid~~G~L~v~~~~g-~~~~~~Gev~~r 317 (321)
T 1bia_A 287 GISRGIDKQGALLLEQDGI-IKPWMGGEISLR 317 (321)
T ss_dssp EEEEEECTTSCEEEEETTE-EEEESSCEEEEC
T ss_pred EEEEEECCCCeEEEEECCC-EEEEEeeeEEEe
Confidence 9999999999999999999 899999999975
No 7
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=100.00 E-value=1e-45 Score=346.34 Aligned_cols=219 Identities=10% Similarity=0.053 Sum_probs=177.8
Q ss_pred CceEEEcccCCCHHHHHHhccccccCCCCceeEEEeCcccCcccCCCCeeeccCCceeEEEeeeccC-CCCcchhHHHHH
Q 017518 109 GRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMED-GRVVPLLQYVAS 187 (370)
Q Consensus 109 g~~l~~~~~v~STN~~a~~~~~~~~~~~~~gtvviA~~QTaGRGR~GR~W~Sp~G~L~fS~~l~~~~-~~~~~~ls~~~~ 187 (370)
+..+.++++++|||++|++++ ..+.++|+||+|+ |.++||||++++++. ...++++++++|
T Consensus 11 ~~~~~~l~~~~STN~~a~~~a---~~g~~~g~vv~A~---------------~g~~L~~S~~l~~~~~~~~~~~lsl~~a 72 (235)
T 3bfm_A 11 LMTGEAAGPGQDPFDLACQKA---ELGVDAGLVVYEL---------------GTDVLRAALVLAPEVPLAKAMAMLPVCG 72 (235)
T ss_dssp TCEEEECCTTCCHHHHHHHHH---HTTCCTTEEEEEE---------------CSSEEEEEEEECCSSCHHHHTTHHHHHH
T ss_pred CcceeecCCCCCHHHHHHHHH---hcCCCCCEEEEEc---------------CCCCEEEEEEecCCCCHHHHHHHHHHHH
Confidence 456889999999999999853 2456899999999 445899999998763 345678999999
Q ss_pred HHHHHHHHHhhhcCCCCCCcceeEecCcEEECCEEEEEEeeeeeec--CC-cceEEEEeccCCCCCCCcchHHHHHHhhh
Q 017518 188 LALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYR--TK-KFNVSIGIGLNVNNEEPTTCLNAVLRKLS 264 (370)
Q Consensus 188 lAV~~aL~~~~~~~g~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~--~~-~~~vvIGIGINvn~~~p~~~l~~~~~~~~ 264 (370)
+||++||+++.. ++..++||||||||++||||||||+|+..+ ++ ..++||||||||++..|......+++...
T Consensus 73 lAv~~aL~~~~~----~~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~~~~~~~vViGIGiNv~~~~~~~~~~~atsL~~ 148 (235)
T 3bfm_A 73 VGFQNALGALAP----PEVAVHLDWNGALRINGARCGRLRIAASTDDPDTQPDWLVVGLDLPLWPEGDGGETPDETALYA 148 (235)
T ss_dssp HHHHHHHHHHSC----TTCCEEECTTSEEEETTEEEEEEEEEESCCCTTSCCSCEEEEEEEESSCCCSSCCCCCSCCGGG
T ss_pred HHHHHHHHHhcC----CCcceEecCCCeEEECCeEEEEEEEEeeccCCCCCccEEEEEEEEEcCCCCcccccccccchhH
Confidence 999999998752 112399999999999999999999999874 33 35799999999998643210000111112
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEeC
Q 017518 265 DSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 344 (370)
Q Consensus 265 ~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~~ 344 (370)
..+..++|++|++.++++|+++|+.|.+.||..++++|++++++.||+|++ . + ++ |++.|||++|+|+|+++
T Consensus 149 ~~~~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v--~-~---~~--G~~~gId~~G~L~v~~~ 220 (235)
T 3bfm_A 149 EGCADVAAPRLLESWARHCLHWINRWDEGELETIHGEWRGLAHGMGEARTE--A-G---RS--GTFLGVDEDFGMLLRDE 220 (235)
T ss_dssp TTCTTCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHBTTTTSEEEE--T-T---EE--EEEEEECTTCCEEEECS
T ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCEEEE--E-e---EE--EEEEEECCCCeEEEEeC
Confidence 345678999999999999999999999999999999999999999999999 2 2 23 99999999999999999
Q ss_pred CCcEEEEcCCCeeE
Q 017518 345 DNQMCELHPDGNSL 358 (370)
Q Consensus 345 dG~~~~v~~dg~Sf 358 (370)
+|+ +.+.+|+++.
T Consensus 221 ~G~-~~i~~GeV~~ 233 (235)
T 3bfm_A 221 TTT-HLIPLTTVLV 233 (235)
T ss_dssp SCE-EEECGGGGSC
T ss_pred CCe-EEEEeeeeEe
Confidence 997 8898888753
No 8
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A
Probab=98.17 E-value=3.1e-05 Score=71.97 Aligned_cols=118 Identities=16% Similarity=0.092 Sum_probs=76.2
Q ss_pred cccCCCCeeeccCCce-eEEEeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCccee-EecCcEEECCEEEEEEe
Q 017518 150 GRGRSKNAWESPKGCL-MFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKI-KWPNDLYLNGIKVGGIL 227 (370)
Q Consensus 150 GRGR~GR~W~Sp~G~L-~fS~~l~~~~~~~~~~ls~~~~lAV~~aL~~~~~~~g~~~~~v~I-KWPNDI~v~gkKlgGIL 227 (370)
.|-|.|..=+--+|++ +++++- ... .+...--...-+|.++|+++ | ++... +++|||+++|||||||-
T Consensus 92 rr~rGGgavyH~pGqlv~Y~i~~-~~~--~~~~~~~~l~~~ii~~L~~l----G---i~a~~~~g~~dv~v~grKIag~g 161 (237)
T 2qhs_A 92 WVERGGDVTYHGPGQLVGYPIFP-VGR--EVRRFLRQIEEAIVRVAAGY----G---ISAYPTPGYAGVWVGEDKLCAIG 161 (237)
T ss_dssp ECCSSSSEEEECTTEEEEEEECC-CTT--CHHHHHHHHHHHHHHHHHHT----T---CCCBCCSSSSSEEETTEEEEEEE
T ss_pred EEcCCCEEEEECCCCEEEEEEEE-CCc--CHHHHHHHHHHHHHHHHHHc----C---CcEEEeCCCCCEEECCcEEEEEe
Confidence 4567888777777875 445543 322 11111122345677777664 4 45666 68999999999999999
Q ss_pred eeeeecCCcceEEEEeccCCCCCC-------C-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 017518 228 CTSTYRTKKFNVSIGIGLNVNNEE-------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFY 287 (370)
Q Consensus 228 iE~~~~~~~~~vvIGIGINvn~~~-------p-------~~~l~~~~~~~~~~~~~~~r~~Ll~~ll~~~~~~~ 287 (370)
+... +..+.-|+.||++.+. | .+++... .+..++.+++...++++|.+.+
T Consensus 162 ~~~~----~~~~~hg~aLnv~~dl~~f~~i~p~g~~~~~vtSl~~~------l~~~~~~~ev~~~l~~~f~~~~ 225 (237)
T 2qhs_A 162 VAVK----EGVSFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKL------LGRKVPMEEAKARVVAAFAEVF 225 (237)
T ss_dssp EEEE----TTEEEEEEEEESSCCGGGGGGBCCCSSCCSEECCHHHH------HTSCCCHHHHHHHHHHHHHHHH
T ss_pred EEee----CCeEEEeEEEecccChHHhcCcCcCccCCCcEEeHHHh------hCCCCCHHHHHHHHHHHHHHHh
Confidence 8732 1245679999998752 1 2333322 1357889999998888887654
No 9
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3
Probab=97.05 E-value=0.014 Score=53.89 Aligned_cols=121 Identities=17% Similarity=0.071 Sum_probs=76.8
Q ss_pred cccCCCCeeeccCCceeEEEeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCcceeEe-cCcEEEC---CEEEEE
Q 017518 150 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKW-PNDLYLN---GIKVGG 225 (370)
Q Consensus 150 GRGR~GR~W~Sp~G~L~fS~~l~~~~~~~~~~ls~~~~lAV~~aL~~~~~~~g~~~~~v~IKW-PNDI~v~---gkKlgG 225 (370)
.|.|.|..=+--||++.+.+++.......+-.+--...-+|.++|+++ | ++...+= .|||+++ |+||||
T Consensus 75 r~~rGG~~tYHgPGQlv~Y~Il~l~~~~~v~~~v~~le~~vI~~L~~~----G---i~a~~~~g~~gV~v~~~~~rKIaa 147 (232)
T 1w66_A 75 DTDRGGKITWHGPGQLVGYPIIGLAEPLDVVNYVRRLEESLIQVCADL----G---LHAGRVDGRSGVWLPGRPARKVAA 147 (232)
T ss_dssp ECSSSSSEEEECTTEEEEEEECBBCSSCCHHHHHHHHHHHHHHHHHHT----T---CCCEEETTEEEEEECSSSCEEEEE
T ss_pred EecCCCceEEECCCCeEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHc----C---CCeEecCCCCeEEecCCCCCEEEE
Confidence 567888877777788888888764431111122123345677777765 4 4555543 4899999 999999
Q ss_pred EeeeeeecCCcceEEEEeccCCCCCC-------C-------cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 017518 226 ILCTSTYRTKKFNVSIGIGLNVNNEE-------P-------TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFY 287 (370)
Q Consensus 226 ILiE~~~~~~~~~vvIGIGINvn~~~-------p-------~~~l~~~~~~~~~~~~~~~r~~Ll~~ll~~~~~~~ 287 (370)
|=+-.. +....=|+-+|++.+. | .+|+... .+..++.+++...+.++|.+.+
T Consensus 148 ig~r~~----~~vt~HG~aLNv~~dL~~f~~I~pcgi~~k~vtSl~~~------lg~~~~~~ev~~~l~~~f~~~~ 213 (232)
T 1w66_A 148 IGVRVS----RATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSLSAE------LGRTVTVDEVRATVAAAVCAAL 213 (232)
T ss_dssp EEEEEE----TTEEEEEEEEESSCCCGGGGGSCGGGCSSSEECCHHHH------HTSCCCHHHHHHHHHHHHHHHH
T ss_pred eeeeee----CCEEEcceEEecCcChHHhcCccccccCCCceeeeHHH------hCCCCCHHHHHHHHHHHHHHHh
Confidence 877432 1234488889998752 1 1333321 1356888998888888887654
No 10
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3
Probab=96.03 E-value=0.066 Score=50.62 Aligned_cols=127 Identities=17% Similarity=0.113 Sum_probs=68.3
Q ss_pred cccCCCCeeeccCCceeEEEeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCccee--------EecCcEEECCE
Q 017518 150 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKI--------KWPNDLYLNGI 221 (370)
Q Consensus 150 GRGR~GR~W~Sp~G~L~fS~~l~~~~~~~~~~ls~~~~lAV~~aL~~~~~~~g~~~~~v~I--------KWPNDI~v~gk 221 (370)
.|-|.|+.=+-.+|++.+|++.+......+-..--...-.|.++|+++ |+ ++.. .=.|||+++|+
T Consensus 89 RR~sGGgaVyHdpG~l~ysli~~~~~~~~v~~~y~~l~~~ii~~L~~l----Gi---~a~~~~~~~~~c~g~~dl~v~gr 161 (288)
T 2p5i_A 89 VRNSGGLAVVLDSGILNLSLVLKEEKGFSIDDGYELMYELICSMFQDH----RE---QIEAREIVGSYCPGSYDLSIDGK 161 (288)
T ss_dssp EESSCCCCEEECTTEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC-------C---CCEECCCTTSSSCCTTCEEETTE
T ss_pred EEcCCCceEEECCCcEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHc----CC---cEEEeccccCCCCCCccEEECCE
Confidence 466777766666678999999765311111111112334455555443 42 2322 11499999999
Q ss_pred EEEEEeeeeeecCCcceEEEEeccCCCCCCCc--ch----HHHHHH-----------------hhhc-CCCCCCHHHHHH
Q 017518 222 KVGGILCTSTYRTKKFNVSIGIGLNVNNEEPT--TC----LNAVLR-----------------KLSD-STYQFRREDVIA 277 (370)
Q Consensus 222 KlgGILiE~~~~~~~~~vvIGIGINvn~~~p~--~~----l~~~~~-----------------~~~~-~~~~~~r~~Ll~ 277 (370)
||||+=.=.. +..+..|+-+|++.+... .- ....+. .+.+ .+..++.+++..
T Consensus 162 KI~G~Aqr~~----~~~~lhh~~l~v~~dl~~~~~~l~~f~~~~l~~~~~ki~~~gi~~~~VtsL~~~l~~~~~~~~v~~ 237 (288)
T 2p5i_A 162 KFAGISQRRI----RGGVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQPHNVSDVLL 237 (288)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSCCCHHHHHH
T ss_pred EEEEEEEEEe----CCEEEEEEEEEecCCHHHHHHHHHHHHHHhhcCccccccccccchhhceeHHHHcCCCCCHHHHHH
Confidence 9999854322 123557888888864211 00 001100 0000 123578888888
Q ss_pred HHHHHHHHHH
Q 017518 278 AFFNKFETFY 287 (370)
Q Consensus 278 ~ll~~~~~~~ 287 (370)
.+.+.|.+.+
T Consensus 238 ~l~~~f~~~~ 247 (288)
T 2p5i_A 238 KALMTLQQHG 247 (288)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhC
Confidence 8888887653
No 11
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A
Probab=95.96 E-value=0.12 Score=48.00 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=71.3
Q ss_pred cccCCCCeeeccCCceeEEEeeeccCCCCcc-hhHHHHHHHHHHHHHHhhhcCCCC-------CCcceeEecCcEEECCE
Q 017518 150 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVP-LLQYVASLALTEAINYVCSRDGLP-------CLDIKIKWPNDLYLNGI 221 (370)
Q Consensus 150 GRGR~GR~W~Sp~G~L~fS~~l~~~~~~~~~-~ls~~~~lAV~~aL~~~~~~~g~~-------~~~v~IKWPNDI~v~gk 221 (370)
.|-|.|..=+-.+|+|.+|++.+.... .+. .. -...-.+.++|+++ |++ ..+....=.|||+++|+
T Consensus 71 rR~sGGgavyhd~G~l~ys~i~~~~~~-~~~~~y-~~l~~~ii~~l~~l----Gi~~~~~~~~~~~a~~~g~~dv~v~g~ 144 (262)
T 2c8m_A 71 RRYTGGGAVYHDLGDLNFSVVRSSDDM-DITSMF-RTMNEAVVNSLRIL----GLDARPGELNDVSIPVNKKTDIMAGEK 144 (262)
T ss_dssp ECSSCSCCEEECTTEEEEEEEEECSSC-CHHHHH-HHHHHHHHHHHHHT----TCCCEECCBCCTTSSSSBTTSEEETTE
T ss_pred EECCCCceEEeCCCcEEEEEEEcCCCC-CHHHHH-HHHHHHHHHHHHHc----CCCcccccccCCcceECCcCcEEECCe
Confidence 345566644444588999999865321 111 12 12455666666654 431 00233333599999999
Q ss_pred EEEEEeeeeeecCCcceEEEEeccCCCCCC--------Ccch-HHH-HH-------HhhhcCCCCCCHHHHHHHHHHHHH
Q 017518 222 KVGGILCTSTYRTKKFNVSIGIGLNVNNEE--------PTTC-LNA-VL-------RKLSDSTYQFRREDVIAAFFNKFE 284 (370)
Q Consensus 222 KlgGILiE~~~~~~~~~vvIGIGINvn~~~--------p~~~-l~~-~~-------~~~~~~~~~~~r~~Ll~~ll~~~~ 284 (370)
||||+=.=.. +..+..|.-||++.+. +..| +.. .. ..+.+.. .++.+++...+.+.|.
T Consensus 145 Ki~G~aqr~~----~~~~lhhgtllv~~d~~~~~~~l~~~~~~~~~~g~~s~~~~vtsL~~~~-~~~~~~v~~~l~~~~~ 219 (262)
T 2c8m_A 145 KIMGAAGAMR----KGAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDFV-DVSIDEVRNALIRGFS 219 (262)
T ss_dssp EEEEEEEEEE----TTEEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGTS-CCCHHHHHHHHHHHHH
T ss_pred EEEEeeeEEe----CCEEEEEEEEEecCCHHHHHHHhCCChhhhhhhccccHHhhhccHHHhc-CCCHHHHHHHHHHHHH
Confidence 9999854322 1246688888888641 0000 100 00 0111112 5789999999999888
Q ss_pred HHHH
Q 017518 285 TFYD 288 (370)
Q Consensus 285 ~~~~ 288 (370)
+.+.
T Consensus 220 ~~~~ 223 (262)
T 2c8m_A 220 ETLH 223 (262)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 7763
No 12
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3
Probab=95.47 E-value=0.19 Score=47.53 Aligned_cols=129 Identities=20% Similarity=0.111 Sum_probs=69.5
Q ss_pred cccCCCCeeeccCCceeEEEeeeccCCCCcch--hHHHHHHHHHHHHHHhhhcCCCCCCccee--------EecCcEEEC
Q 017518 150 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPL--LQYVASLALTEAINYVCSRDGLPCLDIKI--------KWPNDLYLN 219 (370)
Q Consensus 150 GRGR~GR~W~Sp~G~L~fS~~l~~~~~~~~~~--ls~~~~lAV~~aL~~~~~~~g~~~~~v~I--------KWPNDI~v~ 219 (370)
.|-|.|..=+-.+|++.+|++.+......... .--...-.|.++|++ +|+ ++.. .=.|||+++
T Consensus 86 RR~sGGgaVyHdpG~l~ysli~~~~~~~~~~i~~~y~~l~~~ii~aL~~----lGi---~a~~~~~~~~~c~g~~Dl~v~ 158 (288)
T 2p0l_A 86 VRNFGGLAVVADEGILNFSLVIPDVFERKLSISDGYLIMVDFIRSIFSD----FYQ---PIEHFEVETSYCPGKFDLSIN 158 (288)
T ss_dssp ECTTCCSCEEESTTEEEEEEEEESCC---CCHHHHHHHHHHHHHHHTTT----SCS---CCEECCCTTSSSCCTTCEEET
T ss_pred EEcCCCCeEEECCCcEEEEEEEcCccccCCCHHHHHHHHHHHHHHHHHH----cCC---cEEEccccCCCCCCCccEEEC
Confidence 45566776555667899999976531111111 111223444555543 342 3332 114999999
Q ss_pred CEEEEEEeeeeeecCCcceEEEEeccCCCCCCCc--ch----HHHHHH-----------------hhh-cCCCCCCHHHH
Q 017518 220 GIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPT--TC----LNAVLR-----------------KLS-DSTYQFRREDV 275 (370)
Q Consensus 220 gkKlgGILiE~~~~~~~~~vvIGIGINvn~~~p~--~~----l~~~~~-----------------~~~-~~~~~~~r~~L 275 (370)
|+||||+=.=.. +..+..|.-||++.+... .. ....+. .+. ..+..++.+++
T Consensus 159 grKI~G~Aqr~~----~~~~lhh~sl~v~~dl~~~~~~l~~~~~~~l~~~~~k~~~~gi~~~~VtsL~~~l~~~~~~~~v 234 (288)
T 2p0l_A 159 GKKFAGLAQRRI----KNGIAVSIYLSVCGDQKGRSQMISDFYKIGLGDTGSPIAYPNVDPEIMANLSDLLDCPMTVEDV 234 (288)
T ss_dssp TEEEEEEEEEEE----TTEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCCCTTSBCCHHHHTTCCCCHHHH
T ss_pred CEEEEEEeEEEe----CCEEEEEEEEEecCCHHHHHHHHHHHHHHhcCCccccccccccchhheeeHHHHcCCCCCHHHH
Confidence 999999854322 123557888888764210 00 000000 000 01235788999
Q ss_pred HHHHHHHHHHHHHH
Q 017518 276 IAAFFNKFETFYDT 289 (370)
Q Consensus 276 l~~ll~~~~~~~~~ 289 (370)
...+.+.|.+.+..
T Consensus 235 ~~~l~~~f~~~~~~ 248 (288)
T 2p0l_A 235 IDRMLISLKQVGFN 248 (288)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCC
Confidence 99998888776643
No 13
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=95.39 E-value=0.12 Score=50.03 Aligned_cols=124 Identities=13% Similarity=0.108 Sum_probs=74.8
Q ss_pred cccCCCCeeeccCCceeEEEeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCcceeEecCcEEECCEEEEEEeee
Q 017518 150 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCT 229 (370)
Q Consensus 150 GRGR~GR~W~Sp~G~L~fS~~l~~~~~~~~~~ls~~~~lAV~~aL~~~~~~~g~~~~~v~IKWPNDI~v~gkKlgGILiE 229 (370)
.|-|.|..=+-.+|+|.+|++.+....... .+. ...-.|.++|+++ | +++.+.=.|||+++|+||||+=.=
T Consensus 79 RR~sGGgaVyHd~G~l~ys~i~~~~~~~~~-~y~-~l~~~ii~aL~~l----G---i~a~~~gr~Di~v~grKIsG~Aqr 149 (341)
T 1vqz_A 79 RRISGGGAVYHDLNNLNYTIISKEDENKAF-DFK-SFSTPVINTLAQL----G---VKAEFTGRNDLEIDGKKFCGNAQA 149 (341)
T ss_dssp ECSSCSCCEEECTTEEEEEEEEECCTTCCC-SHH-HHHHHHHHHHHHT----T---CCEEEETTTEEEETTEEEEEEEEE
T ss_pred EECCCCCeEEECCCceEEEEEEcCcccCCc-cHH-HHHHHHHHHHHHc----C---CeEEECCCCCEEEeCEEEEEEEEE
Confidence 455666665566788999998754322111 122 3345677777664 4 456665569999999999998543
Q ss_pred eeecCCcceEEEEeccCCCCCCCcchHHHHH-------------------Hhhhc-CCCCCCHHHHHHHHHHHHHHHHH
Q 017518 230 STYRTKKFNVSIGIGLNVNNEEPTTCLNAVL-------------------RKLSD-STYQFRREDVIAAFFNKFETFYD 288 (370)
Q Consensus 230 ~~~~~~~~~vvIGIGINvn~~~p~~~l~~~~-------------------~~~~~-~~~~~~r~~Ll~~ll~~~~~~~~ 288 (370)
.. +..+..|.-||++.+.. .+...+ ..+.+ .+..++.+++...+.+.|.+.+.
T Consensus 150 ~~----~~~~lhhgtllvd~Dl~--~~~~~L~~~~~k~~~kgv~s~~~~VtsL~~~l~~~~~~~~v~~~l~~~f~~~~~ 222 (341)
T 1vqz_A 150 YI----NGRIMHHGCLLFDVDLS--VLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYP 222 (341)
T ss_dssp EE----TTEEEEEEEEESSCCTT--HHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCT
T ss_pred EE----CCEEEEEEEEEecCCHH--HHHHHhCCCccchhhcccccchhhheeHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 22 12456777788875421 010000 00111 12358899999999998877653
No 14
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=95.02 E-value=0.095 Score=50.92 Aligned_cols=125 Identities=18% Similarity=0.155 Sum_probs=70.0
Q ss_pred cccCCCCeeeccCCceeEEEeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCcceeEecCcEEECC-EEEEEEee
Q 017518 150 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNG-IKVGGILC 228 (370)
Q Consensus 150 GRGR~GR~W~Sp~G~L~fS~~l~~~~~~~~~~ls~~~~lAV~~aL~~~~~~~g~~~~~v~IKWPNDI~v~g-kKlgGILi 228 (370)
.|-+.|..=+-.+|++.+|++.+.... ... ...-.|.++|+++ |. ++++...=.|||+++| +||||+=.
T Consensus 72 RR~sGGgaVyHd~G~l~ys~i~~~~~~---~~~--~~~~~ii~~L~~l----G~-~i~a~~~g~~di~v~g~~KIsG~Aq 141 (347)
T 2e5a_A 72 RRRSGGGTVYHDMGNINLTFFTTKKKY---DRM--ENLKLVVRALKAV----HP-HLDVQATKRFDLLLDGQFKISGTAS 141 (347)
T ss_dssp ECSSCSCCEEECTTEEEEEEEECGGGC---CHH--HHHHHHHHHHHHH----ST-TCCEEECTTSCEEETTTEEEECEEE
T ss_pred EECCCCCcEEECCCcEEEEEEeccccC---CHH--HHHHHHHHHHHHh----CC-ceEEEECCCCcEEECCCcEEEEEeE
Confidence 345666655556788999998754321 111 2345567777765 31 1455555459999998 99999833
Q ss_pred eeeecCCcceEEEEeccCCCCCC----------Cc-------chHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 017518 229 TSTYRTKKFNVSIGIGLNVNNEE----------PT-------TCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 288 (370)
Q Consensus 229 E~~~~~~~~~vvIGIGINvn~~~----------p~-------~~l~~~~~~~~~~~~~~~r~~Ll~~ll~~~~~~~~ 288 (370)
.... + .+..+.-||++.+. |. +++......+.+-...++.+++...++++|.+.|.
T Consensus 142 -~~~~-~--~~lhhgtll~~~d~~~l~~~l~~~~~~~~~kgv~Sv~~~v~~L~~~~~~~~~~~v~~~l~~~f~~~~~ 214 (347)
T 2e5a_A 142 -KIGR-N--AAYHHCTLLCGTDGTFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQ 214 (347)
T ss_dssp -EECS-S--CEEEEEEEESSCCHHHHHHHTSCCCCSEEECSCCCCCCCBCCHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -EeeC-C--eEEEEEEEEEecCHHHHHHHHccCchhhhhhcccchHHhhccHHHhCCCCCHHHHHHHHHHHHHHHhC
Confidence 2221 1 23345556665431 10 01100000000112357899999999999988764
No 15
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=94.88 E-value=0.26 Score=47.64 Aligned_cols=123 Identities=21% Similarity=0.195 Sum_probs=73.5
Q ss_pred cccCCCCeeeccCCceeEEEeeeccCCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCcceeEecCcEEE---CC-EEEEE
Q 017518 150 GRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYL---NG-IKVGG 225 (370)
Q Consensus 150 GRGR~GR~W~Sp~G~L~fS~~l~~~~~~~~~~ls~~~~lAV~~aL~~~~~~~g~~~~~v~IKWPNDI~v---~g-kKlgG 225 (370)
.|-|.|..=+-.+|+|.+|++.+.... . .. ...-.|.++|+++ | +++...=.|||++ +| +||||
T Consensus 69 RR~sGGgaVyHd~G~l~ys~i~~~~~~---~-y~-~l~~~ii~~L~~l----G---i~a~~~g~~di~v~~~~g~rKIsG 136 (337)
T 3a7r_A 69 RRSSGGGAVFHDLGNTCFTFMAGKPEY---D-KT-ISTSIVLNALNAL----G---VSAEASGRNDLVVKTVEGDRKVSG 136 (337)
T ss_dssp ECSSCSCCEEECTTEEEEEEEEETTTC---C-HH-HHHHHHHHHHHHT----T---CCEEEETTTEEEECCTTSCEEEEE
T ss_pred EEcCCCccEEECCCcEEEEEEECCccc---C-HH-HHHHHHHHHHHHc----C---CeEEECCCCcEEEEeCCCceEEEE
Confidence 455666655666789999998754321 1 11 2445667777654 4 4566655799999 89 99999
Q ss_pred EeeeeeecCCcceEEEEeccCCCCCC----------Cc-------chHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 017518 226 ILCTSTYRTKKFNVSIGIGLNVNNEE----------PT-------TCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 288 (370)
Q Consensus 226 ILiE~~~~~~~~~vvIGIGINvn~~~----------p~-------~~l~~~~~~~~~~~~~~~r~~Ll~~ll~~~~~~~~ 288 (370)
+=.=.. +..+..|.-||++.+. |. ++.......+.+....++.+++...+.++|.+.+.
T Consensus 137 ~Aqr~~----~~~~lhhgtll~~~dl~~l~~~l~~~~~~~~~kgv~sv~~~vt~L~~~~~~~~~~~v~~~l~~~f~~~~~ 212 (337)
T 3a7r_A 137 SAYRET----KDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYG 212 (337)
T ss_dssp EEEEEC----SSEEEEEEEEESSCCHHHHHHHTSCCCCEEEECSCCCCCCCBCCGGGTCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEE----CCEEEEEEEEEecCCHHHHHHHhcCChhhhhhcCCCchhhheeEHHHhCCCCCHHHHHHHHHHHHHHHcC
Confidence 854321 1245677778887531 10 00000000011112248899999999999987764
No 16
>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; 2.24A {Pyrococcus horikoshii} SCOP: d.104.1.4
Probab=77.55 E-value=9.4 Score=33.71 Aligned_cols=104 Identities=19% Similarity=0.225 Sum_probs=57.6
Q ss_pred ceeEEEeeeccCC---CCcchhHHHHHHHHHHHHHHhhhcCCCCCCcceeEecCcEEECCEEEEEEeeeeeecCCcceEE
Q 017518 164 CLMFSFTIQMEDG---RVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVS 240 (370)
Q Consensus 164 ~L~fS~~l~~~~~---~~~~~ls~~~~lAV~~aL~~~~~~~g~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~~~vv 240 (370)
.-+..|++...+. ......|-+...-+.+.|++. |. -..+==.|||++|||+.=-..-... ...-
T Consensus 66 ~dmlhFIvEhFD~~dl~~~y~rQRLlv~i~kE~L~~~----g~----~~~R~GDDLy~~~~KLSVSIAt~s~----vS~k 133 (190)
T 2ddz_A 66 DDMVHYILELFWHPDILLASSLQKLLIARLVELLWNY----GI----EASRRGDDIYVNGRKLSISIATVSP----VSIK 133 (190)
T ss_dssp EEEEEEEEEECSCCCHHHHHHHHHHHHHHHHHHHHTT----TC----CEEEETTEEEETTEECEEEEEEECS----SCEE
T ss_pred ccceEEEEeeCCCccHHHHHHHHHHHHHHHHHHHHHc----CC----eeeeccCeeeECCCEEEEEEEecCc----chhe
Confidence 3567777753222 112233444444556666643 32 2245669999999998633333222 2244
Q ss_pred EEeccCCCCC-CC----cchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 017518 241 IGIGLNVNNE-EP----TTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYD 288 (370)
Q Consensus 241 IGIGINvn~~-~p----~~~l~~~~~~~~~~~~~~~r~~Ll~~ll~~~~~~~~ 288 (370)
|=+||||... .| +..|.+. + ++..++.+.+..++.+-++
T Consensus 134 IH~GiNV~s~g~P~~V~aigL~dl-------G--i~i~~~~~~i~~~y~~E~~ 177 (190)
T 2ddz_A 134 IHIGLNVKTVGVPPGVDAIGLEEL-------G--IDPTEFMERSAKALVEEIE 177 (190)
T ss_dssp EEEEEESCCSSCCSSSCBCCHHHH-------T--CCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeecccCCCCCccccCHHHc-------C--CCHHHHHHHHHHHHHHHHH
Confidence 7779999864 23 3344432 2 3777788777766654433
No 17
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=56.63 E-value=21 Score=27.26 Aligned_cols=34 Identities=12% Similarity=0.007 Sum_probs=28.5
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEeC
Q 017518 308 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 344 (370)
Q Consensus 308 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~~ 344 (370)
..|++|+|...++.. +. |++.|+|+...|++.+.
T Consensus 12 ~~~k~V~V~l~~gr~-~~--G~L~~~D~~mNlvL~d~ 45 (91)
T 1d3b_B 12 HIDYRMRCILQDGRI-FI--GTFKAFDKHMNLILCDC 45 (91)
T ss_dssp GTTSEEEEEETTCCE-EE--EEEEECCTTCCEEEEEE
T ss_pred HcCCcEEEEECCCeE-EE--EEEEEECCCCeEEecCE
Confidence 579999999987764 44 99999999999999753
No 18
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=55.23 E-value=24 Score=26.01 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=26.8
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEe
Q 017518 308 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 343 (370)
Q Consensus 308 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~ 343 (370)
..|++|+|...++.. +. |++.|+|+.-.|++.+
T Consensus 12 ~~~k~V~V~Lk~gr~-~~--G~L~~~D~~mNlvL~~ 44 (76)
T 3s6n_G 12 FMDKKLSLKLNGGRH-VQ--GILRGFDPFMNLVIDE 44 (76)
T ss_dssp --CCEEEEEETTTEE-EE--EEEEEECTTCCEEEEE
T ss_pred hCCCeEEEEECCCcE-EE--EEEEEECCcceEEEec
Confidence 369999999987754 44 9999999999999976
No 19
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=54.26 E-value=28 Score=25.47 Aligned_cols=34 Identities=12% Similarity=0.026 Sum_probs=28.1
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEeC
Q 017518 308 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 344 (370)
Q Consensus 308 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~~ 344 (370)
..|++|+|...++.. +. |++.|+|+.-.+++.+.
T Consensus 12 ~~~~~V~V~l~~g~~-~~--G~L~~~D~~mNlvL~d~ 45 (75)
T 1h64_1 12 SLDKDVLVILKKGFE-FR--GRLIGYDIHLNVVLADA 45 (75)
T ss_dssp TTTSEEEEEETTSEE-EE--EEEEEECTTCCEEEEEE
T ss_pred HCCCEEEEEECCCCE-EE--EEEEEEeCCCCeEEeeE
Confidence 469999999987654 44 99999999999999763
No 20
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=52.57 E-value=32 Score=25.26 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=27.8
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEe
Q 017518 308 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 343 (370)
Q Consensus 308 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~ 343 (370)
..|++|+|...++.. +. |++.++|+.-.+++.+
T Consensus 12 ~~~~~V~V~L~~g~~-~~--G~L~~~D~~mNlvL~d 44 (77)
T 1i4k_A 12 SLKSPVIVRLKGGRE-FR--GTLDGYDIHMNLVLLD 44 (77)
T ss_dssp TTTSEEEEEETTSCE-EE--EEEEEECTTCCEEEEE
T ss_pred hCCCEEEEEEcCCCE-EE--EEEEEEcCCCCeEEee
Confidence 359999999987764 44 9999999999999976
No 21
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=52.27 E-value=74 Score=25.16 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=26.4
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEECCCceEEEEe
Q 017518 309 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 343 (370)
Q Consensus 309 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~ 343 (370)
.|++|.|...++.. +. |++.|+|+.=.|++.+
T Consensus 25 igk~V~V~Lk~G~~-~~--G~L~~~D~~MNlvL~d 56 (105)
T 4emh_A 25 QGRPILVELKNGET-FN--GHLENCDNYMNLTLRE 56 (105)
T ss_dssp -CCEEEEEETTSCE-EE--EEEEEECTTCCEEEEE
T ss_pred CCCEEEEEECCCCE-EE--EEEEEEcCCceEEEEE
Confidence 59999999988764 44 9999999999998875
No 22
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=50.43 E-value=33 Score=25.15 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=27.2
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEECCCceEEEEe
Q 017518 309 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 343 (370)
Q Consensus 309 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~ 343 (370)
.|++|.|...++.. +. |++.|+|+.-.|++.+
T Consensus 13 ~~k~V~V~Lk~g~~-~~--G~L~~~D~~mNlvL~d 44 (75)
T 4emk_B 13 IGKKVLIRLSSGVD-YK--GILSCLDGYMNLALER 44 (75)
T ss_dssp TTSEEEEECTTSCE-EE--EEEEEECTTCEEEEEE
T ss_pred CCCeEEEEEcCCcE-EE--EEEEEEcCcceEEEcc
Confidence 69999999887754 44 9999999999999875
No 23
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=48.33 E-value=80 Score=23.33 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=27.2
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEECCCceEEEEe
Q 017518 309 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 343 (370)
Q Consensus 309 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~ 343 (370)
.|++|+|...++.. +. |++.++|+.-.+++.+
T Consensus 18 ~~~~V~V~l~~g~~-~~--G~L~~~D~~mNlvL~d 49 (81)
T 1th7_A 18 LNNLVLVKLKGNKE-VR--GMLRSYDQHMNLVLSD 49 (81)
T ss_dssp TTSEEEEEETTTEE-EE--EEEEEECTTCCEEEEE
T ss_pred CCCeEEEEEcCCcE-EE--EEEEEEcCCCCEEEcc
Confidence 68999999987754 44 9999999999999976
No 24
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=48.14 E-value=38 Score=25.38 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=27.1
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEECCCceEEEEe
Q 017518 309 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 343 (370)
Q Consensus 309 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~ 343 (370)
.|++|.|...++.. +. |++.++|+.-.+++.+
T Consensus 24 ~~~~V~V~Lk~g~~-~~--G~L~~~D~~mNlvL~d 55 (83)
T 1mgq_A 24 LNSPVIIKLKGDRE-FR--GVLKSFDLHMNLVLND 55 (83)
T ss_dssp TTSEEEEEETTTEE-EE--EEEEEECTTCCEEEEE
T ss_pred CCCEEEEEEcCCcE-EE--EEEEEECCCceeEEcc
Confidence 58999999987653 44 9999999999999976
No 25
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=45.91 E-value=46 Score=24.39 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=27.6
Q ss_pred cCCCEEEEEECCc-cEEEEeeEEEEEECCCceEEEEe
Q 017518 308 HSGQRVIVQEKNE-DQVVENVVTIQGLTSSGYLLAIG 343 (370)
Q Consensus 308 ~~Gq~V~v~~~~~-~~~~~~~G~i~GId~~G~L~v~~ 343 (370)
..|++|+|...++ .. +. |++.|+|+.-.|++.+
T Consensus 13 ~~~~~v~V~lk~g~~~-~~--G~L~~~D~~mNlvL~d 46 (77)
T 1ljo_A 13 MVGKIIRVEMKGEENQ-LV--GKLEGVDDYMNLYLTN 46 (77)
T ss_dssp TTTSEEEEEETTCSSE-EE--EEEEEECTTCCEEEEE
T ss_pred HCCCEEEEEEeCCCEE-EE--EEEEEECCcceEEEee
Confidence 4689999999877 54 44 9999999999999875
No 26
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=44.80 E-value=43 Score=25.99 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=26.9
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEECCCceEEEEe
Q 017518 309 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 343 (370)
Q Consensus 309 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~ 343 (370)
.|++|.|...++.. +. |+++|+|+.-.|++.+
T Consensus 29 l~k~V~V~Lk~gr~-~~--G~L~gfD~~mNlvL~d 60 (94)
T 4emk_A 29 IGSNLWVIMKSERE-FA--GTLVGFDDYVNIVLKD 60 (94)
T ss_dssp TTSEEEEEESSSEE-EE--EEEEEECTTCCEEEEE
T ss_pred cCCeEEEEECCCcE-EE--EEEEEEcccCCeEeee
Confidence 58899999987654 44 9999999999999875
No 27
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=43.67 E-value=46 Score=26.72 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=27.8
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEeC
Q 017518 308 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 344 (370)
Q Consensus 308 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~~ 344 (370)
++|++|.|...++.. +. |++.++|....|++.+.
T Consensus 31 ~l~k~V~V~L~dGr~-~~--G~L~~fD~~mNLVL~d~ 64 (113)
T 4emk_C 31 YQDQRIQATFTGGRQ-IT--GILKGFDQLMNLVLDDV 64 (113)
T ss_dssp -CCSEEEEEETTSCE-EE--EEEEEECTTCCEEEEEE
T ss_pred HcCCcEEEEEeCCeE-EE--EEEEEEcCcccEEEeeE
Confidence 479999999987764 33 99999999999999753
No 28
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=43.48 E-value=39 Score=26.13 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=28.2
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEeC
Q 017518 308 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 344 (370)
Q Consensus 308 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~~ 344 (370)
..|++|.|...++.. +. |++.|+|+.-.|++.+.
T Consensus 18 ~i~k~V~V~Lk~gr~-~~--G~L~~fD~~mNlVL~d~ 51 (96)
T 3bw1_A 18 NLDERVYIKLRGART-LV--GTLQAFDSHCNIVLSDA 51 (96)
T ss_dssp GTTSEEEEEEGGGCE-EE--EEEEEECTTCCEEEEEE
T ss_pred HCCCeEEEEECCCcE-EE--EEEEEECCCCcEEEcCE
Confidence 479999999987764 44 99999999999998753
No 29
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=42.80 E-value=41 Score=25.04 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=27.7
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEeC
Q 017518 308 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 344 (370)
Q Consensus 308 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~~ 344 (370)
..|++|.|...++. .+. |++.++|+.-.|++.+.
T Consensus 19 ~~~~~V~V~l~~g~-~~~--G~L~~~D~~mNlvL~d~ 52 (81)
T 1i8f_A 19 SIGKQVLVKLRDSH-EIR--GILRSFDQHVNLLLEDA 52 (81)
T ss_dssp TTTSEEEEEEGGGE-EEE--EEEEEECTTCCEEEEEE
T ss_pred HCCCeEEEEEcCCc-EEE--EEEEEEcCCCeeEEccE
Confidence 35899999988765 344 99999999999999753
No 30
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=42.38 E-value=98 Score=22.61 Aligned_cols=33 Identities=6% Similarity=-0.027 Sum_probs=27.4
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEe
Q 017518 308 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 343 (370)
Q Consensus 308 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~ 343 (370)
..|++|.|+..++.. +. |++.|+|+.=.+.+.+
T Consensus 13 ~~g~~V~VeLk~g~~-~~--G~L~~~D~~MNl~L~~ 45 (75)
T 1d3b_A 13 AEGHIVTCETNTGEV-YR--GKLIEAEDNMNCQMSN 45 (75)
T ss_dssp TTTSEEEEEETTSCE-EE--EEEEEECTTCCEEEEE
T ss_pred hCCCEEEEEECCCcE-EE--EEEEEEccceeEEEEe
Confidence 369999999988764 44 9999999998888875
No 31
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=40.41 E-value=57 Score=24.66 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=27.6
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEECCCceEEEEeC
Q 017518 309 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 344 (370)
Q Consensus 309 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~~ 344 (370)
.|++|.|...++.. +. |++.|+|+.-.|++.+.
T Consensus 15 ~~k~V~V~Lk~g~~-~~--G~L~~~D~~mNlvL~d~ 47 (86)
T 3s6n_F 15 TGKPVMVKLKWGME-YK--GYLVSVDGYMNMQLANT 47 (86)
T ss_dssp TTSEEEEEETTSCE-EE--EEEEEECTTCCEEEEEE
T ss_pred CCCeEEEEEcCCeE-EE--EEEEEEcCceEEEEeeE
Confidence 59999999987754 44 99999999999998753
No 32
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=40.27 E-value=57 Score=25.14 Aligned_cols=35 Identities=17% Similarity=-0.068 Sum_probs=27.9
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEeC
Q 017518 308 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 344 (370)
Q Consensus 308 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~~ 344 (370)
..|++|.|...++...+. |++.|+|+.=.|++.+.
T Consensus 29 ~i~k~V~V~Lk~g~~~~~--G~L~~~D~~MNlvL~d~ 63 (93)
T 1n9r_A 29 LVNHRVGVKLKFNSTEYR--GTLVSTDNYFNLQLNEA 63 (93)
T ss_dssp GTTSEEEEEESSTTEEEE--EEEEECCTTTCEEEEEE
T ss_pred hCCCEEEEEEcCCCEEEE--EEEEEEccccEEEEeeE
Confidence 469999999987723444 99999999999998753
No 33
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=40.11 E-value=58 Score=26.43 Aligned_cols=35 Identities=6% Similarity=0.132 Sum_probs=25.1
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEECCCc-eEEEEeCCCcEEEEcC
Q 017518 308 HSGQRVIVQEKNEDQVVENVVTIQGLTSSG-YLLAIGDDNQMCELHP 353 (370)
Q Consensus 308 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G-~L~v~~~dG~~~~v~~ 353 (370)
+.||+|++. |++..++++| .+.++..||....+.-
T Consensus 20 fvgk~Vriv-----------GkV~~~~~~g~~~~l~s~Dg~~Vtv~l 55 (121)
T 3kdf_A 20 FIDKPVCFV-----------GRLEKIHPTGKMFILSDGEGKNGTIEL 55 (121)
T ss_dssp GTTCEEEEE-----------EEEEEECTTSSEEEEECTTSCEEEEEC
T ss_pred hCCCeEEEE-----------EEEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence 578998874 7888998766 6667776776655544
No 34
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=36.45 E-value=71 Score=24.55 Aligned_cols=33 Identities=6% Similarity=0.062 Sum_probs=27.4
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEECCCceEEEEeC
Q 017518 309 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 344 (370)
Q Consensus 309 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~~ 344 (370)
.|++|.|...++.. +. |++.++|+.-.|++.+.
T Consensus 18 ~~~~V~V~l~~gr~-~~--G~L~~~D~~mNlvL~d~ 50 (93)
T 4emg_A 18 LDEIVYVKLRGDRE-LN--GRLHAYDEHLNMVLGDA 50 (93)
T ss_dssp TTSEEEEEETTTEE-EE--EEEEEECTTCCEEEEEE
T ss_pred CCCEEEEEECCCcE-EE--EEEEEECCcccEEeecE
Confidence 58999999987653 44 99999999999998753
No 35
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=35.55 E-value=46 Score=30.29 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=27.3
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEe
Q 017518 308 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 343 (370)
Q Consensus 308 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~ 343 (370)
++|++|+|...++.. +. |+++++|..-.|++.+
T Consensus 12 lIdKrV~V~LkdGRe-l~--GtLkgFDq~MNLVL~D 44 (231)
T 3pgw_B 12 HIDYRMRCILQDGRI-FI--GTFKAFDKHMNLILCD 44 (231)
T ss_pred hcCCeEEEEECCCcE-EE--EEEEEEcccccEEecC
Confidence 479999999887664 33 9999999999998865
No 36
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=28.82 E-value=1.8e+02 Score=21.69 Aligned_cols=45 Identities=11% Similarity=0.038 Sum_probs=31.0
Q ss_pred HHHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEeCCCc
Q 017518 298 LEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQ 347 (370)
Q Consensus 298 l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~~dG~ 347 (370)
+.+.|.......+.+|++..-++.+. . |+|.+.|.. .++++. +|+
T Consensus 7 lQd~fLn~lrk~k~~VtI~L~nG~~l-~--G~I~~fD~f-~VlL~~-~g~ 51 (77)
T 1kq1_A 7 IQDKALENFKANQTEVTVFFLNGFQM-K--GVIEEYDKY-VVSLNS-QGK 51 (77)
T ss_dssp HHHHHHHHHHHHTCEEEEEETTSCEE-E--EEEEEECSS-EEEEEE-TTE
T ss_pred cHHHHHHHHHhcCCeEEEEEeCCCEE-E--EEEEEECCc-EEEEEE-CCe
Confidence 34455555556678999999887653 3 999999986 455554 454
No 37
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=27.28 E-value=2e+02 Score=21.60 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=31.3
Q ss_pred HHHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEeCCCcE
Q 017518 298 LEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQM 348 (370)
Q Consensus 298 l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~~dG~~ 348 (370)
+.+.|...+-..+.+|+|..-++.+. . |.|.+.|.. .++++ .+|..
T Consensus 11 lQd~fLn~lrk~~~~Vtv~L~nG~~l-~--G~I~~fD~f-~VlL~-~~g~q 56 (78)
T 3ahu_A 11 IQDQFLNQIRKENTYVTVFLLNGFQL-R--GQVKGFDNF-TVLLE-SEGKQ 56 (78)
T ss_dssp HHHHHHHHHHHHTCCEEEEETTSCEE-E--EEEEEECSS-EEEEE-SSSCE
T ss_pred hHHHHHHHHHHcCCcEEEEEeCCeEE-E--EEEEEEcce-EEEEE-ECCee
Confidence 44556666666678899998887653 4 999999975 44455 35543
No 38
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=27.04 E-value=2.4e+02 Score=22.48 Aligned_cols=33 Identities=30% Similarity=0.202 Sum_probs=27.3
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEe
Q 017518 308 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 343 (370)
Q Consensus 308 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~ 343 (370)
..|++|.|...++.. +. |++.++|+.=.|++.+
T Consensus 10 ~~gk~V~V~Lk~g~~-~~--G~L~~~D~~MNlvL~d 42 (119)
T 1b34_A 10 LSHETVTIELKNGTQ-VH--GTITGVDVSMNTHLKA 42 (119)
T ss_dssp CTTCEEEEEETTCCE-EE--EEEEEECTTCCEEEEE
T ss_pred hCCCEEEEEEcCCCE-EE--EEEEEEcccceEEecc
Confidence 469999999987754 44 9999999999998875
No 39
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=26.70 E-value=2.6e+02 Score=22.71 Aligned_cols=33 Identities=6% Similarity=-0.027 Sum_probs=27.4
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEe
Q 017518 308 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 343 (370)
Q Consensus 308 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~ 343 (370)
..|++|.|+..++.. +. |++.++|+.=.+.+.+
T Consensus 13 ~~gk~V~VeLknG~~-~~--G~L~~~D~~MNi~L~d 45 (126)
T 2y9a_D 13 AEGHIVTCETNTGEV-YR--GKLIEAEDNMNCQMSN 45 (126)
T ss_dssp CSSCEEEEEESSCCE-EE--EEEEEECTTSCEEEEE
T ss_pred hCCCEEEEEECCCcE-EE--EEEEEEcCceEEEEee
Confidence 579999999988754 44 9999999988888865
No 40
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=25.21 E-value=54 Score=26.49 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=27.2
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEECCCceEEEEeC
Q 017518 309 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 344 (370)
Q Consensus 309 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~~ 344 (370)
.|++|.|...++.. +. |++.|+|+.-.|++.+.
T Consensus 37 l~k~V~V~Lk~Gr~-~~--G~L~~fD~~mNlVL~d~ 69 (121)
T 2fwk_A 37 IGNRIYVVMKGDKE-FS--GVLRGFDEYVNMVLDDV 69 (121)
T ss_dssp BTSBCEEEETTTEE-EC--CEEEEECTTCCEEEESC
T ss_pred cCCeEEEEECCCcE-EE--EEEEEEcccCCeEeceE
Confidence 47889999887764 44 89999999999999764
No 41
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=25.03 E-value=1.4e+02 Score=24.91 Aligned_cols=34 Identities=3% Similarity=0.083 Sum_probs=24.8
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEECCC-ceEEEEeCCCcEEEEc
Q 017518 308 HSGQRVIVQEKNEDQVVENVVTIQGLTSS-GYLLAIGDDNQMCELH 352 (370)
Q Consensus 308 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~-G~L~v~~~dG~~~~v~ 352 (370)
+.||+|++. |++..++++ +.+.++..||..+.+.
T Consensus 41 fvGk~VriV-----------GkV~~~~~~G~~~~l~s~Dg~~VtV~ 75 (142)
T 2pi2_E 41 FIDKPVCFV-----------GRLEKIHPTGKMFILSDGEGKNGTIE 75 (142)
T ss_dssp STTCEEEEE-----------EEEEEECTTSSEEEEECTTSCEEEEE
T ss_pred hCCCEEEEE-----------EEEeEEcCCCCEEEEEeCCCcEEEEE
Confidence 458988874 788899854 5666777777776665
No 42
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=24.77 E-value=2.2e+02 Score=21.36 Aligned_cols=45 Identities=9% Similarity=0.061 Sum_probs=31.2
Q ss_pred HHHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEeCCCcE
Q 017518 298 LEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQM 348 (370)
Q Consensus 298 l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~~dG~~ 348 (370)
+.+.|.........+|+|..-++.+. . |++.+.|..-- +++ +|+.
T Consensus 8 lQd~fLn~lrk~k~~VtI~LvnG~~L-~--G~I~~fD~f~V-lL~--~g~~ 52 (79)
T 3sb2_A 8 LQDPFLNALRKEHVPVSIYLVNGIKL-Q--GHVESFDQYVV-LLR--NTVT 52 (79)
T ss_dssp THHHHHHHHHHTTCCEEEEETTSCEE-E--EEEEEECSSEE-EEE--SSSE
T ss_pred hHHHHHHHHHhcCCeEEEEEeCCCEE-E--EEEEEECCcEE-EEE--CCce
Confidence 34455666666788899999887653 3 99999998744 444 5543
No 43
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=23.72 E-value=2.1e+02 Score=20.70 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=33.5
Q ss_pred HHHHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEe------CCCcEEEEcCCCeeEEe
Q 017518 297 TLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG------DDNQMCELHPDGNSLDF 360 (370)
Q Consensus 297 ~l~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~------~dG~~~~v~~dg~Sfd~ 360 (370)
++++.-.+.| +|++|.+.-+++ ..++ |+..++|+.=-|+ ++ ..|+...+.-|+.+--|
T Consensus 5 ~LLdktL~~W--Kg~rvAv~vg~e-hSFt--GiledFDeEviLL-~dV~D~~GNk~k~liv~idDinWim 68 (71)
T 1ycy_A 5 SLLEKVLKEW--KGHKVAVSVGGD-HSFT--GTLEDFDEEVILL-KDVVDVIGNRGKQMLIGLEDINWIM 68 (71)
T ss_dssp CHHHHHHHHH--TTSEEEEEEC-----CE--EEEEEECSSEEEE-EEEEETTEEEEEEEEEEGGGEEEEE
T ss_pred hHHHHHHHHh--CCcEEEEEecCc-ceee--eehhhcCcceeeh-hhHHHHhccccceeEEEeccceEEE
Confidence 3444444444 799999987664 3444 8999999885443 32 12445555556555443
No 44
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=23.55 E-value=2.1e+02 Score=21.19 Aligned_cols=41 Identities=10% Similarity=0.090 Sum_probs=29.3
Q ss_pred HHHHHHHhccCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEe
Q 017518 299 EELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIG 343 (370)
Q Consensus 299 ~~~y~~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~ 343 (370)
.+.|.+.+...+.+|++..-++.+. . |++.+.|+. .+++++
T Consensus 10 Qd~~L~~lrk~k~~Vti~L~nG~~l-~--G~I~~fD~f-~vlL~~ 50 (74)
T 2ylb_A 10 QDPFLNALRRERVPVSIYLVNGIKL-Q--GQIESFDQF-VILLKN 50 (74)
T ss_dssp HHHHHHHHHHHTCCEEEEETTSCEE-E--EEEEEECSS-EEEEES
T ss_pred HHHHHHHHHhcCCcEEEEEeCCCEE-E--EEEEEECCc-EEEEEC
Confidence 3445555556678899999887653 3 999999987 555553
No 45
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=23.28 E-value=2.5e+02 Score=21.40 Aligned_cols=34 Identities=6% Similarity=-0.051 Sum_probs=24.8
Q ss_pred ccCCCEEEEEECCccEEEEeeEEEEEECCCc-eEEEEe
Q 017518 307 LHSGQRVIVQEKNEDQVVENVVTIQGLTSSG-YLLAIG 343 (370)
Q Consensus 307 ~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G-~L~v~~ 343 (370)
-+.||+|.|...++. .++ |++.++|+.. .+++.+
T Consensus 14 ~li~KeV~V~l~dg~-~y~--G~l~tvDp~s~sIvL~n 48 (86)
T 1y96_A 14 DYIYKEVRVTASEKN-EYK--GWVLTTDPVSANIVLVN 48 (86)
T ss_dssp HTTTCEEEEEETTTE-EEE--EEEEEECTTTCCEEEEE
T ss_pred hhcCCEEEEEEcCCC-EEE--EEEEEECCCceEEEEee
Confidence 357999999998765 444 9999999654 444444
No 46
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=23.19 E-value=1.4e+02 Score=23.84 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=23.3
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEeCCCcEEEEc
Q 017518 308 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELH 352 (370)
Q Consensus 308 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~~dG~~~~v~ 352 (370)
+.|+.|++. |++..++. +.+.+...||..+.+.
T Consensus 16 ~~g~~Vriv-----------GkV~~~~g-~~~~l~s~d~~~Vtv~ 48 (114)
T 4gop_A 16 YVGQTVRIV-----------GKVHKVTG-NTLLMQTSDLGNVEIA 48 (114)
T ss_dssp GTTSEEEEE-----------EEEEEEET-TEEEEECTTSCEEEEE
T ss_pred hCCCeEEEE-----------EEEeeeCC-CEEEEEeCCCCEEEEE
Confidence 578988874 67777776 7888887666555554
No 47
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=22.72 E-value=1.7e+02 Score=21.37 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=27.0
Q ss_pred EECCccEEEEeeEEEEEECCCceEEEEeCCCcEEEEcCC
Q 017518 316 QEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPD 354 (370)
Q Consensus 316 ~~~~~~~~~~~~G~i~GId~~G~L~v~~~dG~~~~v~~d 354 (370)
.+..+...++ +.++|+. +|.+.+...||..+.+-..
T Consensus 9 tDrtG~F~Ve--A~flg~~-dgki~LhK~nGv~I~VP~~ 44 (68)
T 2hbp_A 9 VDRSGTFKVD--AEFIGCA-KGKIHLHKANGVKIAVAAD 44 (68)
T ss_dssp EBSSSCCEEE--EEEEEEE-TTEEEEECTTSCEEEEETT
T ss_pred EcCCCCeEEE--EEEEEEe-CCEEEEEecCCcEEEeEhH
Confidence 3444554554 8899998 7899999899998888654
No 48
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=21.80 E-value=1.6e+02 Score=23.40 Aligned_cols=33 Identities=6% Similarity=0.166 Sum_probs=27.1
Q ss_pred CCCEEEEEECCccEEEEeeEEEEEECCCceEEEEeC
Q 017518 309 SGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 344 (370)
Q Consensus 309 ~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~~ 344 (370)
.|++|.|...++.. +. |++.|+|+.-.|++.+.
T Consensus 38 ~~k~V~V~Lk~gr~-~~--G~L~~fD~~mNlvL~d~ 70 (118)
T 1b34_B 38 NNTQVLINCRNNKK-LL--GRVKAFDRHCNMVLENV 70 (118)
T ss_dssp HTCEEEEEETTSCE-EE--EEEEEECTTCCEEEEEE
T ss_pred CCcEEEEEECCCcE-EE--EEEEEeCCceEEEEeCE
Confidence 47999999987764 44 99999999999998753
No 49
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=21.49 E-value=28 Score=25.25 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=19.5
Q ss_pred CCCcceeEecCcEEEC---------CEEEEEEeeee
Q 017518 204 PCLDIKIKWPNDLYLN---------GIKVGGILCTS 230 (370)
Q Consensus 204 ~~~~v~IKWPNDI~v~---------gkKlgGILiE~ 230 (370)
|+-.+++|=|||+|+. ++| +|+|.|.
T Consensus 4 PG~~V~V~np~~~Yy~y~G~VQRvsdgk-aaVLFEG 38 (66)
T 2jz2_A 4 PGATVRVTNVDDTYYRFEGLVQRVSDGK-AAVLFEN 38 (66)
T ss_dssp TTCEEEECCTTSTTBTCEEEEEEEETTE-EEEEEES
T ss_pred CCCEEEEeCCCCcccceeEEEEEecCCc-EEEEecC
Confidence 5567999999999985 233 6777774
No 50
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=21.27 E-value=1.8e+02 Score=23.83 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=28.1
Q ss_pred cCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEeC
Q 017518 308 HSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGD 344 (370)
Q Consensus 308 ~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~~ 344 (370)
..|++|.|...++.. +. |++.|+|+.=.|++.+.
T Consensus 8 ~igk~V~V~Lk~G~~-~~--G~L~~~D~~MNlvL~d~ 41 (130)
T 1m5q_A 8 LLGREVQVVLSNGEV-YK--GVLHAVDNQLNIVLANA 41 (130)
T ss_dssp TTTSEEEEEETTSCE-EE--EEEEEECTTCCEEEEEE
T ss_pred hCCCeEEEEECCCcE-EE--EEEEEEcccceeEEeeE
Confidence 479999999987754 44 99999999999988753
No 51
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=20.21 E-value=2.9e+02 Score=21.02 Aligned_cols=49 Identities=6% Similarity=0.003 Sum_probs=35.5
Q ss_pred HHhccCCCEEEEEECCccEEEEeeEEEEEECCCceEEEEeCCCcEEEEcCCC
Q 017518 304 KTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDG 355 (370)
Q Consensus 304 ~~~~~~Gq~V~v~~~~~~~~~~~~G~i~GId~~G~L~v~~~dG~~~~v~~dg 355 (370)
...+..|.+|...-.++ ..+. |+|..|+.+|.-.|.=.||....+.+..
T Consensus 19 ~~~f~vGd~VlArW~D~-~yYP--AkI~sV~~~~~YtV~F~DG~~etvk~~~ 67 (85)
T 3qii_A 19 SSEFQINEQVLACWSDC-RFYP--AKVTAVNKDGTYTVKFYDGVVQTVKHIH 67 (85)
T ss_dssp --CCCTTCEEEEECTTS-CEEE--EEEEEECTTSEEEEEETTSCEEEEEGGG
T ss_pred CcccccCCEEEEEeCCC-CEee--EEEEEECCCCeEEEEEeCCCeEEecHHH
Confidence 34567899998887443 4444 8999999999888886678877776543
Done!