BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017519
(370 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana
GN=At3g57810 PE=2 SV=1
Length = 317
Score = 300 bits (768), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 165/341 (48%), Positives = 215/341 (63%), Gaps = 33/341 (9%)
Query: 30 MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRT 89
MI + I C++N +++ + +G + GV G S C+ L SG S+++Y G +
Sbjct: 2 MICYSPITTCSRNAISI----KRHLGSRLYGVVAHGSSKFSCYSLLSGLSRRHYTGFRVS 57
Query: 90 ISSSSLNVLQPFQATCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRL 149
+S+ +P ++ GL RP + K +E+S M+
Sbjct: 58 VSN------RP--SSWHDKGLFGSVLINRPTV---------APKEKLEVSFLSPEANMKC 100
Query: 150 LVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSK--AHAEAADEKEDGEEDYD 207
K++ N + A G+I LLVCYSS+ A+A+++ +K+ +
Sbjct: 101 --------SKIESNMRNLYCYSRFAYTGVIVSLLVCYSSTSQSAYADSSRDKDANNVHHH 152
Query: 208 LSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAK 267
S+ K+ +GK+VYTDYS+IGIPGDGRCLFR+VAHG CLR+GK AP +QRELAD+LR +
Sbjct: 153 SSDGKFHNGKRVYTDYSIIGIPGDGRCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTR 212
Query: 268 VADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAG 327
VADEFI+RR+ETEWF+EGDFD YV QIR PHVWGGEPEL MASHVL+MPITVYM D AG
Sbjct: 213 VADEFIQRRQETEWFVEGDFDTYVRQIRDPHVWGGEPELFMASHVLQMPITVYMKDDKAG 272
Query: 328 GLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGIS 368
GLISIAEYGQEYGK+ PIRVLYHGFGHYDAL L HE S
Sbjct: 273 GLISIAEYGQEYGKDDPIRVLYHGFGHYDAL--LLHESKAS 311
>sp|Q6GM06|OTU6B_XENLA OTU domain-containing protein 6B OS=Xenopus laevis GN=otud6b PE=2
SV=1
Length = 294
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 25/195 (12%)
Query: 184 VCYSSSKAHAEAADEKEDGE-----EDYDLSNVKYSHGKKVYT-----DYSVIGIPGDGR 233
V + + +AA EKE + E +LS ++ +K+ + + IP DG
Sbjct: 101 VSKAQKRREKKAAQEKERDDRIAEAEIANLSGARHLESQKLAQILAERELQIRQIPSDGH 160
Query: 234 CLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVAD--EFIKRREETEWFIEGDFDLYV 291
C++RA+ H G +++ + AD ++ + D F+ + + + +F Y
Sbjct: 161 CMYRAIEHQLN-EQGNSLTVANLRSQTADYMQKRAEDFLPFLTNSSTGDMYTQEEFQKYC 219
Query: 292 SQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLY-- 349
+ I WGG+ EL SH+L+ PI V A L + G+EY KPI ++Y
Sbjct: 220 TDIVNTPAWGGQLELRALSHILKTPIEVIQ----AESLPIV--IGEEYSN-KPITLVYMR 272
Query: 350 HGFG---HYDALQNL 361
H +G HY++++ L
Sbjct: 273 HAYGLGEHYNSVEQL 287
>sp|Q7L8S5|OTU6A_HUMAN OTU domain-containing protein 6A OS=Homo sapiens GN=OTUD6A PE=2
SV=1
Length = 288
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 70/151 (46%), Gaps = 22/151 (14%)
Query: 227 GIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFI---KRREETEWFI 283
IP DG C++RA+ + SV + R K DEF+ E ++ F
Sbjct: 145 AIPADGHCMYRAIQDQLVF-----SVSVEMLRCRTASYMKKHVDEFLPFFSNPETSDSFG 199
Query: 284 EGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEK 343
DF +Y I + WGG+ EL SHVL+ PI V D+ LI G+EY K K
Sbjct: 200 YDDFMIYCDNIVRTTAWGGQLELRALSHVLKTPIEVIQ--ADSPTLI----IGEEYVK-K 252
Query: 344 PIRVLYHGFG-----HYDALQNL--GHEGGI 367
PI ++Y + HY+++ L G GG+
Sbjct: 253 PIILVYLRYAYSLGEHYNSVTPLEAGAAGGV 283
>sp|Q5M8L0|OTU6B_XENTR OTU domain-containing protein 6B OS=Xenopus tropicalis GN=otud6b
PE=2 SV=1
Length = 294
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 91/214 (42%), Gaps = 37/214 (17%)
Query: 163 NAGPIDWPKGCASAGLICGLLVCYSSSKAHAEAADEKEDGE-----EDYDLSNVKYSHGK 217
N P+ P+ + + +AA EKE E E +LS ++ +
Sbjct: 92 NEAPVQQPRQSKA------------QKRREKKAAQEKERDERIAEAEIANLSGARHLESQ 139
Query: 218 KV-----YTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVAD-- 270
K+ + + IP DG C++RA+ H R G +++ + AD ++ D
Sbjct: 140 KLARILAERELQIRQIPSDGHCMYRAIEHQLRER-GNDLTVANLRSQTADYMQNHAEDFL 198
Query: 271 EFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLI 330
F+ + + + +F Y + I WGG+ EL SH+L+ I V + I
Sbjct: 199 PFLTNSSTGDMYTQEEFLKYCTDIVNTPAWGGQLELRALSHILKTAIEVIQAE---SSPI 255
Query: 331 SIAEYGQEYGKEKPIRVLY--HGFG---HYDALQ 359
I G+EY K I ++Y H +G HY++++
Sbjct: 256 VI---GEEYSS-KAITLVYMRHAYGLGEHYNSVE 285
>sp|Q8N6M0|OTU6B_HUMAN OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1
SV=1
Length = 293
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 17/146 (11%)
Query: 224 SVIGIPGDGRCLFRAVAHGACLRAGKPAPSV-SIQRELADDLRAKVAD--EFIKRREETE 280
+ IP DG C+++A+ L+ A +V +++ + A+ +++ V D F+ +
Sbjct: 148 EIKQIPSDGHCMYKAIEDQ--LKEKDCALTVVALRSQTAEYMQSHVEDFLPFLTNPNTGD 205
Query: 281 WFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYG 340
+ +F Y I WGG+ EL SH+L+ PI + D+ +I G+EY
Sbjct: 206 MYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPIEIIQ--ADSPPII----VGEEYS 259
Query: 341 KEKPIRVLY--HGFG---HYDALQNL 361
K KP+ ++Y H +G HY+++ L
Sbjct: 260 K-KPLILVYMRHAYGLGEHYNSVTRL 284
>sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1
Length = 293
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 15/145 (10%)
Query: 224 SVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVAD--EFIKRREETEW 281
+ I DG C++RAV H R G ++ + A +R+ D F+ +
Sbjct: 148 QIKEISSDGHCMYRAVEHQLTER-GLALGLKELRDQTAQYMRSHADDFMPFLTNPNTGDM 206
Query: 282 FIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGK 341
+ +F+ Y S + WGG+ EL S VL++PI V D I+I G+EY K
Sbjct: 207 YTAEEFEKYCSDVADTAAWGGQLELKALSQVLQLPIEVIQAD---SPCITI---GEEYDK 260
Query: 342 EKPIRVLY--HGFG---HYDALQNL 361
K I ++Y H +G HY++++ L
Sbjct: 261 PK-ITLIYMRHAYGLGEHYNSVEPL 284
>sp|Q96G74|OTUD5_HUMAN OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1
Length = 571
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 231 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 290
DG CLFRAVA V +++ + +R D +K + ++ DF Y
Sbjct: 221 DGACLFRAVAD-----------QVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 269
Query: 291 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEY-GQEYGKEKPIRVLY 349
+++ RK + G E+ + + P+ VY + + I + G +++PIRV Y
Sbjct: 270 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSY 329
Query: 350 HGFGHYDALQN 360
H HY+++ N
Sbjct: 330 HRNIHYNSVVN 340
>sp|Q7ZX21|OTU5A_XENLA OTU domain-containing protein 5-A OS=Xenopus laevis GN=otud5-a PE=2
SV=1
Length = 513
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 231 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 290
DG CLFRAVA V +++ + +R D +K + ++ DF Y
Sbjct: 174 DGACLFRAVAD-----------QVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 222
Query: 291 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYH 350
+++ RK + G E+ + + P+ VY + + +G + +++PIRV YH
Sbjct: 223 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEPINTF----HGIQKNEDEPIRVSYH 278
Query: 351 GFGHYDALQN 360
HY+++ N
Sbjct: 279 RNIHYNSVVN 288
>sp|Q640H3|OTU5B_XENLA OTU domain-containing protein 5-B OS=Xenopus laevis GN=otud5-b PE=2
SV=1
Length = 518
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 231 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 290
DG CLFRAVA V +++ + +R D +K + ++ DF Y
Sbjct: 179 DGACLFRAVAD-----------QVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 227
Query: 291 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYH 350
+++ RK + G E+ + + P+ VY + + +G + +++PIRV YH
Sbjct: 228 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEPINTF----HGIQQNEDEPIRVSYH 283
Query: 351 GFGHYDALQN 360
HY+++ N
Sbjct: 284 RNIHYNSVVN 293
>sp|Q2YDU3|OTUD5_RAT OTU domain-containing protein 5 OS=Rattus norvegicus GN=Otud5 PE=2
SV=2
Length = 566
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 231 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 290
DG CLFRAVA V +++ + +R D +K + ++ DF Y
Sbjct: 221 DGACLFRAVAD-----------QVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 269
Query: 291 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYH 350
+++ RK + G E+ + + P+ VY + + +G +++PIRV YH
Sbjct: 270 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTF----HGIHQNEDEPIRVSYH 325
Query: 351 GFGHYDALQN 360
HY+++ N
Sbjct: 326 RNIHYNSVVN 335
>sp|Q3U2S4|OTUD5_MOUSE OTU domain-containing protein 5 OS=Mus musculus GN=Otud5 PE=1 SV=2
Length = 566
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 15/130 (11%)
Query: 231 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 290
DG CLFRAVA V +++ + +R D +K + ++ DF Y
Sbjct: 221 DGACLFRAVAD-----------QVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 269
Query: 291 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYH 350
+++ RK + G E+ + + P+ VY + + +G +++PIRV YH
Sbjct: 270 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTF----HGIHQNEDEPIRVSYH 325
Query: 351 GFGHYDALQN 360
HY+++ N
Sbjct: 326 RNIHYNSVVN 335
>sp|Q6GL44|OTUD5_XENTR OTU domain-containing protein 5 OS=Xenopus tropicalis GN=otud5 PE=2
SV=1
Length = 518
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 231 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 290
DG CLFRAVA V +++ + +R D +K + ++ DF Y
Sbjct: 179 DGACLFRAVAD-----------QVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 227
Query: 291 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYH 350
+++ RK + G E+ + + P+ VY + + +G + +++PIRV YH
Sbjct: 228 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEPINTF----HGIQQNEDEPIRVSYH 283
Query: 351 GFGHYDALQN 360
HY+++ N
Sbjct: 284 RNIHYNSVVN 293
>sp|Q8K2H2|OTU6B_MOUSE OTU domain-containing protein 6B OS=Mus musculus GN=Otud6b PE=2
SV=1
Length = 294
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 17/148 (11%)
Query: 222 DYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSV-SIQRELADDLRAKVAD--EFIKRREE 278
+ + IP DG C++ A+ LR A +V S++R+ A+ ++ D F+
Sbjct: 147 ELEIKQIPSDGHCMYGALEDQ--LREQDCALTVASLRRQTAEYMQTHSDDFLPFLTNPST 204
Query: 279 TEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQE 338
+ + +F Y I WGG+ EL SH+L+ PI + DA +I G+E
Sbjct: 205 GDMYTPEEFGKYCDDIVNTAAWGGQLELRALSHILQTPIEILQ--ADAPPII----VGEE 258
Query: 339 YGKEKPIRVLY--HGFG---HYDALQNL 361
Y + P+ ++Y H +G HY+++ L
Sbjct: 259 YPR-NPLVLVYMRHAYGLGEHYNSVTRL 285
>sp|Q08BW0|OTU5A_DANRE OTU domain-containing protein 5-A OS=Danio rerio GN=otud5a PE=2
SV=1
Length = 560
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 17/131 (12%)
Query: 231 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 290
DG CLFRAVA V +++ + +R D +K + ++ DF Y
Sbjct: 219 DGACLFRAVAD-----------QVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 267
Query: 291 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEY-GQEYGKEKPIRVLY 349
+++ RK + G E+ + + P+ VY G I + G ++PIRV Y
Sbjct: 268 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQ-----SGTEPINTFHGIHQNNDEPIRVSY 322
Query: 350 HGFGHYDALQN 360
H HY+++ N
Sbjct: 323 HRNIHYNSVVN 333
>sp|Q5ZIP6|OTU6B_CHICK OTU domain-containing protein 6B OS=Gallus gallus GN=OTUD6B PE=2
SV=1
Length = 302
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 17/146 (11%)
Query: 224 SVIGIPGDGRCLFRAVAHGACLRAGKPAPSV-SIQRELADDLRAKVAD--EFIKRREETE 280
+ IP DG C++RA+ L+ + +V +++ + A + + D F+ +
Sbjct: 157 EIKQIPSDGHCMYRAIE--DQLKDHHNSWTVATLRNQTAKYIHSHFDDFLPFLTNPNTGD 214
Query: 281 WFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYG 340
+ + +F+ Y I WGG+ EL SH+L+ PI V D+ +I G+EY
Sbjct: 215 MYSKEEFEKYCDDIANTAAWGGQLELRALSHILQTPIEVVQ--MDSPSII----VGEEYS 268
Query: 341 KEKPIRVLY--HGFG---HYDALQNL 361
KPI ++Y H +G HY++++ L
Sbjct: 269 G-KPIILVYMRHAYGLGEHYNSVKLL 293
>sp|Q6IE21|OTU6A_MOUSE OTU domain-containing protein 6A OS=Mus musculus GN=Otud6a PE=2
SV=1
Length = 290
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 34/147 (23%)
Query: 228 IPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVA-------DEFIKRREETE 280
IP DG C++RA+ SV+I + LR + A D+F+ E E
Sbjct: 147 IPADGHCMYRAIQDQLVF-------SVTI-----ESLRYRTAYYMRKHIDDFLPFFTEPE 194
Query: 281 ---WFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQ 337
++ DF Y I WGG+ EL SHVL+ PI V + I I G+
Sbjct: 195 AGNFYTREDFLRYCDDIVHNASWGGQLELRALSHVLQTPIEVVQAN---SPTIVI---GE 248
Query: 338 EYGKEKPIRVLYHGFG-----HYDALQ 359
EY + KP+ ++Y + HY++++
Sbjct: 249 EYTR-KPVTLVYLHYACDFGEHYNSVK 274
>sp|Q9UUK3|OTU2_SCHPO Ubiquitin thioesterase otu2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=otu2 PE=4 SV=1
Length = 324
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 201 DGEEDYDLSNVKYSHGKKVYTDYSVIG--IPGDGRCLFRAVAHGACLRAGKPAPSVSIQR 258
+ E+ DL N + K+ + ++ IP DG CLF +++H S +
Sbjct: 161 ESEKMADLKNEEKKKFSKILEEAGLVAVDIPADGNCLFASISHQLNYHHNVKLNSQA--- 217
Query: 259 ELADDLRAKVADEFIKRREETEWFIEGD-------FDLYVSQIRKPHVWGGEPELLMASH 311
LR K AD +K E+ E F+ + Y ++IR WG + E+ ++
Sbjct: 218 -----LRNKSADYVLKHCEQFEGFLLDEESGEVLPVSDYCNEIRNNSKWGSDIEIQALAN 272
Query: 312 VLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLY--HGFG---HYDAL 358
L +P+ VY + G ++ ++ EKP+ + Y H FG HY++L
Sbjct: 273 SLEVPVHVYNTE---GPVLKFNPSTVKF--EKPLCIAYYQHLFGLGAHYNSL 319
>sp|P38747|OTU2_YEAST OTU domain-containing protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=OTU2 PE=1 SV=1
Length = 307
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 226 IGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQ----RELADDLRAKVADEFIKRREETEW 281
I DG CLF ++ LR + R L+ + + D+FI + E
Sbjct: 170 FDIQPDGHCLFASILDQLKLRHDPKKLDQDMDVMKLRWLSCNYVQEHRDDFIPYLFDEET 229
Query: 282 FIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGK 341
D D Y ++ WGGE E+L SHV PI++ M +G I + Y E GK
Sbjct: 230 MKMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISILM----SGRPIQV--YN-ECGK 282
Query: 342 EKPIRVLY--HGFG---HYDALQN 360
++++Y H + HY++L +
Sbjct: 283 NPELKLVYYKHSYALGEHYNSLHD 306
>sp|P22856|VL96_IRV1 Putative ubiquitin thioesterase L96 OS=Tipula iridescent virus
GN=L96 PE=3 SV=1
Length = 867
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 48/114 (42%), Gaps = 28/114 (24%)
Query: 202 GEEDYDLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELA 261
G D DL + G Y VI + GDG CLFRAV G LR + ++ E
Sbjct: 591 GNADRDLEILARRRG------YKVIPVKGDGNCLFRAV--GKSLRLNQ---NIKYSHE-- 637
Query: 262 DDLRAKVADEFIKRREETEWFIE-----GD---------FDLYVSQIRKPHVWG 301
DLRA+V +E E ++E GD + Y+ I KP WG
Sbjct: 638 -DLRAQVVTYLTSHKEFLEPYLEYVTESGDTTPQEYAKNVERYIKNISKPGTWG 690
>sp|Q01804|OTUD4_HUMAN OTU domain-containing protein 4 OS=Homo sapiens GN=OTUD4 PE=1 SV=3
Length = 1113
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 17/126 (13%)
Query: 231 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 290
DG CLFRAVA + V ++ LR + RE+ E FIEG F+ Y
Sbjct: 42 DGSCLFRAVAEQVLHSQSR---HVEVRMACIHYLR--------ENREKFEAFIEGSFEEY 90
Query: 291 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYH 350
+ ++ P W G+ E+ S + R +Y +S ++ + EK + + +
Sbjct: 91 LKRLENPQEWVGQVEISALSLMYRKDFIIYREPN-----VSPSQVTENNFPEK-VLLCFS 144
Query: 351 GFGHYD 356
HYD
Sbjct: 145 NGNHYD 150
>sp|B2RRE7|OTUD4_MOUSE OTU domain-containing protein 4 OS=Mus musculus GN=Otud4 PE=1 SV=1
Length = 1107
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 231 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 290
DG CLFRAVA + V ++ LR + RE+ E FIEG F+ Y
Sbjct: 42 DGSCLFRAVAEQVLHSQSR---HVEVRMACIRYLR--------ENREKFEAFIEGSFEEY 90
Query: 291 VSQIRKPHVWGGEPELLMASHVLRMPITVYM 321
+ ++ P W G+ E+ S + R +Y
Sbjct: 91 LKRLENPQEWVGQVEISALSLMYRKDFVIYQ 121
>sp|Q5T2D3|OTUD3_HUMAN OTU domain-containing protein 3 OS=Homo sapiens GN=OTUD3 PE=1 SV=1
Length = 398
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 18/137 (13%)
Query: 228 IPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGD- 286
+PGDG CLFRA+ G L G + ++E D + IK+RE+ E F+E D
Sbjct: 70 VPGDGNCLFRAL--GDQL-EGHSRNHLKHRQETVDYM--------IKQREDFEPFVEDDI 118
Query: 287 -FDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPI 345
F+ +V+ + KP + G ++ + ++ + ++ + L I G E + +
Sbjct: 119 PFEKHVASLAKPGTFAGNDAIVAFARNHQLNVVIHQLN---APLWQI--RGTEKSSVREL 173
Query: 346 RVLYHGFGHYDALQNLG 362
+ Y HYD+++ +
Sbjct: 174 HIAYRYGEHYDSVRRIN 190
>sp|Q00106|VG65_ICHVA Uncharacterized protein ORF65 OS=Ictalurid herpesvirus 1 (strain
Auburn) GN=ORF65 PE=4 SV=1
Length = 1434
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 31/167 (18%)
Query: 199 KEDGEED--YDLSNVKYSHG-KKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVS 255
E EED L N YS G K+VY IPGDG CL+ + A ++
Sbjct: 1264 NESLEEDQFTRLENTLYSMGLKRVY-------IPGDGNCLYNTLRFIAGADGES---AID 1313
Query: 256 IQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRK---PHVWGGEPELLMASHV 312
++EL DD+R V ++ R DL +++I P+V+G +L+ +
Sbjct: 1314 FKKELLDDIRKYVRNQDPAER-----------DLILTEIDNLAGPNVYGSG-DLISFFQL 1361
Query: 313 LR-MPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDAL 358
LR + +TV DK G L+ + QE P ++ HY+ L
Sbjct: 1362 LRGVGVTVVSWDKIGGRLVKLVATNQE--GIPPEYIILFTNSHYEPL 1406
>sp|Q32Q05|OTU1_RAT Ubiquitin thioesterase OTU1 OS=Rattus norvegicus GN=Yod1 PE=2 SV=1
Length = 343
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 18/150 (12%)
Query: 215 HGKKVYTDYSV-----IGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVA 269
HG Y ++ +P D CLF +V + PA + ++R +A + A
Sbjct: 131 HGAPSYVRETLPVLTRTAVPADNSCLFTSVYYVVEGGVLNPACAPEMRRLIAQ-IVASDP 189
Query: 270 DEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGL 329
D + +E + + Y IR+ WGG E+ + S + I V
Sbjct: 190 DLY------SEAILGKTNEEYCDWIRRDDTWGGAIEISILSKFYQCEICVVDTQT----- 238
Query: 330 ISIAEYGQEYGKEKPIRVLYHGFGHYDALQ 359
+ I +G++ G K + ++Y G HYD LQ
Sbjct: 239 VRIDRFGEDAGYTKRVLLIYDGI-HYDPLQ 267
>sp|Q0IH43|OTU1_XENLA Ubiquitin thioesterase OTU1 OS=Xenopus laevis GN=yod1 PE=2 SV=1
Length = 304
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 25/138 (18%)
Query: 228 IPGDGRCLFRAVAHGACLRAGKPAPSVSIQRE------LADDLRAKVADEFIKRREETEW 281
+P D CLF ++ + + G P+ +++ +A D A K EE
Sbjct: 110 VPADNSCLFTSIYY--VVEGGVYDPACALEMRSLIAEIVASDQSAYCDAVLGKSNEE--- 164
Query: 282 FIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGK 341
Y S IR+ WGG E+ + S + I V + I +G++ G
Sbjct: 165 --------YCSWIRREDTWGGAIEVSILSKFYQCEICVV-----DTQTVRIDRFGEDSGY 211
Query: 342 EKPIRVLYHGFGHYDALQ 359
K + ++Y G HYD LQ
Sbjct: 212 TKRVLLIYDGI-HYDPLQ 228
>sp|P43558|OTU1_YEAST Ubiquitin thioesterase OTU1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=OTU1 PE=1 SV=1
Length = 301
Score = 36.6 bits (83), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 20/136 (14%)
Query: 224 SVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREE-TEWF 282
SV + D CLF A+A+G +++ DLR V+ E + + +
Sbjct: 110 SVHPVLDDNSCLFHAIAYGI------------FKQDSVRDLREMVSKEVLNNPVKFNDAI 157
Query: 283 IEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKE 342
++ Y I K WGG E+ + S L + +Y+ D DA + I ++ ++ +
Sbjct: 158 LDKPNKDYAQWILKMESWGGAIEIGIISDAL--AVAIYVVDIDA---VKIEKFNEDKF-D 211
Query: 343 KPIRVLYHGFGHYDAL 358
I +L++G HYD+L
Sbjct: 212 NYILILFNGI-HYDSL 226
>sp|Q5VV17|OTUD1_HUMAN OTU domain-containing protein 1 OS=Homo sapiens GN=OTUD1 PE=2 SV=1
Length = 481
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 13/130 (10%)
Query: 231 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 290
DG CL+RAV+ S+ REL + +AD + IEGD +
Sbjct: 317 DGNCLYRAVSKTVYG-------DQSLHRELREQTVHYIADHL----DHFSPLIEGDVGEF 365
Query: 291 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLIS--IAEYGQEYGKEKPIRVL 348
+ + W G PELL +L + I + + +S I G E I +
Sbjct: 366 IIAAAQDGAWAGYPELLAMGQMLNVNIHLTTGGRLESPTVSTMIHYLGPEDSLRPSIWLS 425
Query: 349 YHGFGHYDAL 358
+ GHYDA+
Sbjct: 426 WLSNGHYDAV 435
>sp|Q8CB27|OTU1_MOUSE Ubiquitin thioesterase OTU1 OS=Mus musculus GN=Yod1 PE=1 SV=1
Length = 343
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 13/132 (9%)
Query: 228 IPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDF 287
+P D CLF +V + PA + ++R +A + +D + +E +
Sbjct: 149 VPADNSCLFTSVYYVVEGGVLNPACAPEMRRLIA---QIVASDPVLY----SEAILGKTN 201
Query: 288 DLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRV 347
+ Y IR+ WGG E+ + S + I V + I +G++ G K + +
Sbjct: 202 EDYCDWIRRDDTWGGAIEISILSKFYQCEICVVDTQT-----VRIDRFGEDAGYTKRVLL 256
Query: 348 LYHGFGHYDALQ 359
+Y G HYD LQ
Sbjct: 257 IYDGI-HYDPLQ 267
>sp|Q567B1|OTU1_DANRE Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1 PE=2 SV=1
Length = 301
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 25/140 (17%)
Query: 228 IPGDGRCLFRAVAHGACLRAGKPAPSVS------IQRELADDLRAKVADEFIKRREETEW 281
+P D CLF +V + + G P+ + I + +A D A K EE
Sbjct: 107 VPADNSCLFTSVNY--VMEGGVYDPACASEMRGLIAQIVASDPTAYSEAVLGKTNEE--- 161
Query: 282 FIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGK 341
Y + IR+ WGG E+ + S + I V + + +G++ G
Sbjct: 162 --------YCTWIRRDDTWGGAIEVSILSKFYQCEICVV-----DTQTVRVDRFGEDAGY 208
Query: 342 EKPIRVLYHGFGHYDALQNL 361
K + ++Y G HYD LQ +
Sbjct: 209 TKRVLLIYDGI-HYDPLQKV 227
>sp|Q9CUB6|OTUD1_MOUSE OTU domain-containing protein 1 OS=Mus musculus GN=Otud1 PE=2 SV=2
Length = 454
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 13/130 (10%)
Query: 231 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 290
DG CL+RAV+ S+ REL + +AD + IEGD +
Sbjct: 290 DGNCLYRAVSKTVYG-------DQSLHRELREQTVHYIADHL----DHFSPLIEGDVGEF 338
Query: 291 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLIS--IAEYGQEYGKEKPIRVL 348
+ + W G PELL +L + I + + +S I G E I +
Sbjct: 339 IIAAAQDGAWAGYPELLAMGQMLNVNIHLTTGGRLESPTVSTMIHYLGPEDSLRPSIWLS 398
Query: 349 YHGFGHYDAL 358
+ GHYDA+
Sbjct: 399 WLSNGHYDAV 408
>sp|Q5F3A6|OTU1_CHICK Ubiquitin thioesterase OTU1 OS=Gallus gallus GN=YOD1 PE=2 SV=1
Length = 302
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 53/138 (38%), Gaps = 23/138 (16%)
Query: 228 IPGDGRCLFRAV---AHGACLRAG-KPAPSVSIQRELADDLRAKVADEFIK-RREETEWF 282
+P D CLF +V G G P I + +A D A K RE EW
Sbjct: 108 VPADNSCLFTSVYYVVEGGVYDPGCAPEMRSLIAQIVASDPEAYCEAVLGKTNREYCEW- 166
Query: 283 IEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKE 342
IR+ WGG E+ + S + I V + I +G++ G
Sbjct: 167 -----------IRREETWGGAIEVSILSKFYQCEICVVDTQT-----VRIDRFGEDAGYT 210
Query: 343 KPIRVLYHGFGHYDALQN 360
K + ++Y G HYD L+
Sbjct: 211 KRVLLIYDGI-HYDPLER 227
>sp|Q7RTX8|HIN1L_HUMAN Putative HIN1-like protein OS=Homo sapiens GN=HIN1L PE=5 SV=1
Length = 443
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 228 IPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDF 287
+ DG CLFRAVA + V ++ LR + RE+ E I G F
Sbjct: 39 VAKDGSCLFRAVAEQVLHSQSR---HVEVRMACIHCLR--------ENREKFEAIIGGSF 87
Query: 288 DLYVSQIRKPHVWGGEPELLMASHVLR 314
+ Y+ ++ P W G+ E+ S + R
Sbjct: 88 EGYLKRLENPQEWVGQMEISALSLMYR 114
>sp|P0A8Z6|YBGC_SHIFL Acyl-CoA thioester hydrolase YbgC OS=Shigella flexneri GN=ybgC PE=3
SV=1
Length = 134
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 308 MASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGH 354
M + + R P+ VY D DAGG++ A Y Y + + + +H F
Sbjct: 1 MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQ 47
>sp|P0A8Z3|YBGC_ECOLI Acyl-CoA thioester hydrolase YbgC OS=Escherichia coli (strain K12)
GN=ybgC PE=1 SV=1
Length = 134
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 308 MASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGH 354
M + + R P+ VY D DAGG++ A Y Y + + + +H F
Sbjct: 1 MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQ 47
>sp|P0A8Z4|YBGC_ECOL6 Acyl-CoA thioester hydrolase YbgC OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=ybgC PE=3 SV=1
Length = 134
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 308 MASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGH 354
M + + R P+ VY D DAGG++ A Y Y + + + +H F
Sbjct: 1 MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQ 47
>sp|P0A8Z5|YBGC_ECO57 Acyl-CoA thioester hydrolase YbgC OS=Escherichia coli O157:H7
GN=ybgC PE=3 SV=1
Length = 134
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 308 MASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGH 354
M + + R P+ VY D DAGG++ A Y Y + + + +H F
Sbjct: 1 MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQ 47
>sp|P10383|OTU_DROME Protein ovarian tumor locus OS=Drosophila melanogaster GN=otu PE=2
SV=2
Length = 853
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 275 RREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAE 334
+R E I GDFD Y+ + KP +G EL S + R + +Y ++
Sbjct: 70 KRRIFEKEIPGDFDSYMQDMSKPKTYGTMTELRAMSCLYRRNVILYEPYNMGTSVVFNRR 129
Query: 335 YGQEYGKEKPIRVLYHGFGHYDALQNL 361
Y + + RV ++ H+D++ ++
Sbjct: 130 YAENF------RVFFNNENHFDSVYDV 150
>sp|Q8BYA0|TBCD_MOUSE Tubulin-specific chaperone D OS=Mus musculus GN=Tbcd PE=2 SV=1
Length = 1196
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 14/123 (11%)
Query: 160 LKLNAGPIDWPKGCASAGLICGLLVCYSSSKAHAEAADE-KEDGEEDYDLSNVKYSHGKK 218
LK + +GC S L L +C +D DG+EDYD+ G +
Sbjct: 309 LKPKVATWRYQRGCRS--LAANLKLCAPGKSDQKLLSDSLTSDGDEDYDVPE-----GVE 361
Query: 219 VYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREE 278
+ ++G+ + + A G AG+ + RELADD+ V D F + +
Sbjct: 362 TVIEQLLVGLKDKDTVVRWSAAKGIGRMAGR------LPRELADDVVGSVLDCFSFQETD 415
Query: 279 TEW 281
W
Sbjct: 416 KAW 418
>sp|Q9D8C3|ALG13_MOUSE UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Mus
musculus GN=Alg13 PE=2 SV=2
Length = 1166
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 19/129 (14%)
Query: 231 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREET-EWFIEGDFDL 289
D CLFRA++ Q RA V+ ++K ++ E ++EG F+
Sbjct: 233 DASCLFRAISEQL----------FHSQIHHLQIRRACVS--YMKENQQAFESYVEGSFEK 280
Query: 290 YVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLY 349
Y+ ++ P G+ EL S + +Y + ++ + G E I + Y
Sbjct: 281 YLERLGDPKESAGQLELKALSLIYNRDFIIYRYPGKPPTQVT------DNGFEDKIILCY 334
Query: 350 HGFGHYDAL 358
GHYD++
Sbjct: 335 SNNGHYDSV 343
>sp|A7GTG6|RNPH_BACCN Ribonuclease PH OS=Bacillus cereus subsp. cytotoxis (strain NVH
391-98) GN=rph PE=3 SV=1
Length = 245
Score = 31.6 bits (70), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 253 SVSIQRELADDLRAKVADEFIKRREETEWF----IEGDFDLYVSQIRKPHVWG--GEPEL 306
++ IQR + LRA V E + R T W I+ D + I +V +L
Sbjct: 87 TMEIQRLIGRALRAVVDLEVLGER--TVWIDCDVIQADGGTRTASITGAYVAMVLAFEKL 144
Query: 307 LMASHVLRMPITVYMHDKDAG-----GLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNL 361
L A V ++P+ Y+ G G++ Y ++ + + V+ G GH+ +Q
Sbjct: 145 LQAEKVTKIPVKDYLAATSVGILEEQGVVLDLNYAEDSKADVDMNVIMTGKGHFVEVQGT 204
Query: 362 GHEGGISK 369
G E S+
Sbjct: 205 GEEATFSR 212
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,977,379
Number of Sequences: 539616
Number of extensions: 6139737
Number of successful extensions: 14280
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 14229
Number of HSP's gapped (non-prelim): 47
length of query: 370
length of database: 191,569,459
effective HSP length: 119
effective length of query: 251
effective length of database: 127,355,155
effective search space: 31966143905
effective search space used: 31966143905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)