Query 017519
Match_columns 370
No_of_seqs 133 out of 942
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 09:18:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2606 OTU (ovarian tumor)-li 100.0 5E-34 1.1E-38 274.8 -7.6 292 30-363 2-300 (302)
2 PF02338 OTU: OTU-like cystein 99.9 1.7E-23 3.6E-28 174.0 8.1 112 229-355 1-121 (121)
3 KOG3288 OTU-like cysteine prot 99.7 4.2E-17 9.1E-22 155.8 7.4 126 222-363 109-235 (307)
4 PF10275 Peptidase_C65: Peptid 99.5 2.3E-13 4.9E-18 127.9 13.3 99 260-359 138-243 (244)
5 KOG3991 Uncharacterized conser 99.3 5.3E-12 1.2E-16 119.5 9.1 99 259-360 154-255 (256)
6 KOG2605 OTU (ovarian tumor)-li 99.3 1E-12 2.3E-17 131.9 4.4 93 219-322 214-309 (371)
7 COG5539 Predicted cysteine pro 99.0 4.8E-11 1E-15 116.2 -2.0 187 143-359 107-305 (306)
8 COG5539 Predicted cysteine pro 98.6 1.8E-08 4E-13 98.4 2.1 114 227-360 116-231 (306)
9 PF05415 Peptidase_C36: Beet n 88.9 1.5 3.2E-05 37.3 6.3 95 228-357 3-103 (104)
10 PF05381 Peptidase_C21: Tymovi 46.2 1.2E+02 0.0025 26.4 7.5 91 231-357 2-94 (104)
11 PRK09784 hypothetical protein; 29.8 28 0.00061 34.8 1.4 24 218-241 195-218 (417)
12 KOG2605 OTU (ovarian tumor)-li 27.2 29 0.00063 35.9 1.1 43 280-322 3-45 (371)
13 PF05412 Peptidase_C33: Equine 24.5 52 0.0011 28.7 1.9 16 229-244 5-20 (108)
14 KOG2606 OTU (ovarian tumor)-li 21.1 54 0.0012 33.2 1.6 25 260-284 188-212 (302)
15 PF07418 PCEMA1: Acidic phosph 20.5 63 0.0014 32.4 1.9 39 42-85 2-45 (282)
No 1
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5e-34 Score=274.82 Aligned_cols=292 Identities=27% Similarity=0.303 Sum_probs=201.3
Q ss_pred eEEeeeccccccceEEecccccccccceeeeeeecCCCceeeeecccCcccccccceeEEeecCCccccccccccccccc
Q 017519 30 MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPG 109 (370)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 109 (370)
|++..++..|.+|...|. +|-+.+-......+..+..|.+.. ++.|+.|.+....++. -+-|++++.++++.
T Consensus 2 ~~~~~~~~~~~~~e~iLa----RHr~E~keLq~ki~~mKk~a~k~~-k~~rK~~~~~~~~le~---el~qkH~kEL~~~~ 73 (302)
T KOG2606|consen 2 MTCMDSEQDEESNEEILA----RHRRERKELQAKITSMKKAAPKGN-KKKRKELTEDIAKLEK---ELSQKHKKELEKLK 73 (302)
T ss_pred cCCccchhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHhhhhcc-HHHHHHHHHHHHHHHh---HHHHHHHHHHHhhc
Confidence 678889999999998898 999999999999999999998887 8999999985544544 24579999999999
Q ss_pred cccCCCCCCCcceeeeeecccccceeeeeeecccceeeeecccCCCcccccccCcccccCCCCCCcccceeeeeeecCcc
Q 017519 110 LTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSS 189 (370)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~k~~~~~~~~~s~~~~n~~~~~~~~~~~~~~~~~g~~~~~~~~ 189 (370)
+... +...++....-|+..+..+|.++- .+-.+. ..+.+.-|-.-+-...+...--.++.+++
T Consensus 74 ~~~~--------------~e~~~~e~~~~s~l~~~a~~~~~~--~ee~P~-~sKa~k~r~k~r~e~r~~e~~~~~e~~~~ 136 (302)
T KOG2606|consen 74 LINE--------------SEVTPKENLIESVLSPIANMSLEN--KEETPR-QSKARKRREKKRKEERKREAEKIAEEESL 136 (302)
T ss_pred ccCc--------------cccCccccchhhhhcccccccccc--cccCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887 456667778888888888876432 110000 01111111111222222111122332221
Q ss_pred cchhhccccccCCCCcccchhhccccccccccCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHH
Q 017519 190 KAHAEAADEKEDGEEDYDLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVA 269 (370)
Q Consensus 190 ~~~a~~~~~~~~~~~~~~~~~~~~~~g~~~~~gL~I~~IpGDGNCLFRAVAhQL~~~sG~~~~~~~lrr~~h~~LR~~vv 269 (370)
+ + .+. .+.++. .+ .....-.+||.+.+||+||+|||+||+|||..+++...+.+.+|++.+++||.++.
T Consensus 137 ~-~--~~~------~k~~E~-~k-~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~ 205 (302)
T KOG2606|consen 137 S-N--QAD------AKSMEK-EK-LAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVE 205 (302)
T ss_pred h-c--CCc------hhhhHH-HH-HHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 0 0 000 111111 11 23334458899999999999999999999999877666656666666666666654
Q ss_pred HHHhcChhhhcccccc--CHHHHHHhhcCCCCcCChHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEE
Q 017519 270 DEFIKRREETEWFIEG--DFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRV 347 (370)
Q Consensus 270 dy~~~nrddfe~FIe~--dfdeY~~~M~k~gtWGGelEL~ALA~ll~v~I~Vy~~d~~s~G~i~I~efG~e~~~~~pI~L 347 (370)
|++--..++.++++.+ +|++||++|++++.|||+|||.|||++|++||+||+.+ +. +.+||++|.+++||.|
T Consensus 206 df~pf~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~----~p--~~~~geey~kd~pL~l 279 (302)
T KOG2606|consen 206 DFLPFLLDEETGDSLGPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQAD----GP--ILEYGEEYGKDKPLIL 279 (302)
T ss_pred HhhhHhcCccccccCCHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecC----CC--ceeechhhCCCCCeee
Confidence 4332222333344433 79999999999999999999999999999999999975 22 5789999988899999
Q ss_pred EEc----CCC-ceeeeecCCC
Q 017519 348 LYH----GFG-HYDALQNLGH 363 (370)
Q Consensus 348 ~Yh----g~g-HYDSL~~~~~ 363 (370)
+|| +.| ||||+.++.+
T Consensus 280 vY~rH~y~LGeHYNS~~~~~n 300 (302)
T KOG2606|consen 280 VYHRHAYGLGEHYNSVTPLKN 300 (302)
T ss_pred ehHHhHHHHHhhhcccccccc
Confidence 996 334 9999986543
No 2
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.89 E-value=1.7e-23 Score=174.02 Aligned_cols=112 Identities=39% Similarity=0.689 Sum_probs=88.0
Q ss_pred CCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHh-cChhhhccccccCHHHHHHhhcCCCCcCChHHHH
Q 017519 229 PGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFI-KRREETEWFIEGDFDLYVSQIRKPHVWGGEPELL 307 (370)
Q Consensus 229 pGDGNCLFRAVAhQL~~~sG~~~~~~~lrr~~h~~LR~~vvdy~~-~nrddfe~FIe~dfdeY~~~M~k~gtWGGelEL~ 307 (370)
||||||||||||+||+...+. .+..|.+||++++++|. .+++.|++|++++ +|+++++|||++||+
T Consensus 1 pgDGnClF~Avs~~l~~~~~~-------~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~ 67 (121)
T PF02338_consen 1 PGDGNCLFRAVSDQLYGDGGG-------SEDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQ 67 (121)
T ss_dssp -SSTTHHHHHHHHHHCTT-SS-------STTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHH
T ss_pred CCCccHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHH
Confidence 799999999999999844311 13568999999999999 9999999998777 999999999999999
Q ss_pred HHHHhcCCCEEEEeecCCCCCceEEEEcCC---CCCCCCeEEEEEcC-----CCce
Q 017519 308 MASHVLRMPITVYMHDKDAGGLISIAEYGQ---EYGKEKPIRVLYHG-----FGHY 355 (370)
Q Consensus 308 ALA~ll~v~I~Vy~~d~~s~G~i~I~efG~---e~~~~~pI~L~Yhg-----~gHY 355 (370)
|||++|+++|.||+... .......++.. .....++|.++|++ .+||
T Consensus 68 a~a~~~~~~I~v~~~~~--~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy 121 (121)
T PF02338_consen 68 ALANVLNRPIIVYSSSD--GDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY 121 (121)
T ss_dssp HHHHHHTSEEEEECETT--TBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred HHHHHhCCeEEEEEcCC--CCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence 99999999999998732 12222223322 22356899999987 7798
No 3
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4.2e-17 Score=155.85 Aligned_cols=126 Identities=25% Similarity=0.384 Sum_probs=107.7
Q ss_pred CcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhh-ccccccCHHHHHHhhcCCCCc
Q 017519 222 DYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREET-EWFIEGDFDLYVSQIRKPHVW 300 (370)
Q Consensus 222 gL~I~~IpGDGNCLFRAVAhQL~~~sG~~~~~~~lrr~~h~~LR~~vvdy~~~nrddf-e~FIe~dfdeY~~~M~k~gtW 300 (370)
-+.++.||.|..|||+||+..+....+. ...+||+.++.....|++.| +++++..-.|||+||+++..|
T Consensus 109 vl~~~vvp~DNSCLF~ai~yv~~k~~~~----------~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsW 178 (307)
T KOG3288|consen 109 VLSRRVVPDDNSCLFTAIAYVIFKQVSN----------RPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSW 178 (307)
T ss_pred eeEEEeccCCcchhhhhhhhhhcCccCC----------CcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHcccccc
Confidence 4788999999999999999988732111 12689999999999999987 578889999999999999999
Q ss_pred CChHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCceeeeecCCC
Q 017519 301 GGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGH 363 (370)
Q Consensus 301 GGelEL~ALA~ll~v~I~Vy~~d~~s~G~i~I~efG~e~~~~~pI~L~Yhg~gHYDSL~~~~~ 363 (370)
||.+||..||+.|++.|.|++.. + ..|..||++.+-...+.|.|.|. |||+|.+...
T Consensus 179 GGaIElsILS~~ygveI~vvDiq--t---~rid~fged~~~~~rv~llydGI-HYD~l~m~~~ 235 (307)
T KOG3288|consen 179 GGAIELSILSDYYGVEICVVDIQ--T---VRIDRFGEDKNFDNRVLLLYDGI-HYDPLAMNEF 235 (307)
T ss_pred CceEEeeeehhhhceeEEEEecc--e---eeehhcCCCCCCCceEEEEeccc-ccChhhhccC
Confidence 99999999999999999999753 2 35788998765678899999998 9999988653
No 4
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=99.50 E-value=2.3e-13 Score=127.94 Aligned_cols=99 Identities=22% Similarity=0.303 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhcChhhhccccc----cCHHHHHH-hhcCCCCcCChHHHHHHHHhcCCCEEEEeecCC-CCCceEEE
Q 017519 260 LADDLRAKVADEFIKRREETEWFIE----GDFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKD-AGGLISIA 333 (370)
Q Consensus 260 ~h~~LR~~vvdy~~~nrddfe~FIe----~dfdeY~~-~M~k~gtWGGelEL~ALA~ll~v~I~Vy~~d~~-s~G~i~I~ 333 (370)
....+|..+..||..|.++|++|++ .++++||+ .++..+.-.+|+.+.|||++|+++|.|+..|.+ ++..+...
T Consensus 138 iV~flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~ 217 (244)
T PF10275_consen 138 IVIFLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRH 217 (244)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEE
T ss_pred HHHHHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccc
Confidence 3457888888899999999999997 57999995 778888999999999999999999999999865 44445555
Q ss_pred EcCCC-CCCCCeEEEEEcCCCceeeee
Q 017519 334 EYGQE-YGKEKPIRVLYHGFGHYDALQ 359 (370)
Q Consensus 334 efG~e-~~~~~pI~L~Yhg~gHYDSL~ 359 (370)
.+.++ ....+.|.|+|... |||.|+
T Consensus 218 ~~~~~~~~~~~~i~LLyrpg-HYdIly 243 (244)
T PF10275_consen 218 EFPPDNESQEPQITLLYRPG-HYDILY 243 (244)
T ss_dssp EES-SSTTSS-SEEEEEETB-EEEEEE
T ss_pred cCCCccCCCCCEEEEEEcCC-cccccc
Confidence 66432 12467899999985 999986
No 5
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=5.3e-12 Score=119.51 Aligned_cols=99 Identities=19% Similarity=0.261 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHhcChhhhcccccc--CHHHHHHh-hcCCCCcCChHHHHHHHHhcCCCEEEEeecCCCCCceEEEEc
Q 017519 259 ELADDLRAKVADEFIKRREETEWFIEG--DFDLYVSQ-IRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEY 335 (370)
Q Consensus 259 ~~h~~LR~~vvdy~~~nrddfe~FIe~--dfdeY~~~-M~k~gtWGGelEL~ALA~ll~v~I~Vy~~d~~s~G~i~I~ef 335 (370)
..+.++|..+..++..|.|.|+|||++ ++++||.+ ++-..+-.||++|.||++.+++.|.|-..|+.+.+...-+.|
T Consensus 154 yiV~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~f 233 (256)
T KOG3991|consen 154 YIVMYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDF 233 (256)
T ss_pred HHHHHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcC
Confidence 345678888888888999999999976 79999974 444567799999999999999999999998776543322333
Q ss_pred CCCCCCCCeEEEEEcCCCceeeeec
Q 017519 336 GQEYGKEKPIRVLYHGFGHYDALQN 360 (370)
Q Consensus 336 G~e~~~~~pI~L~Yhg~gHYDSL~~ 360 (370)
.+ +..+.|.|+|.. ||||.|+.
T Consensus 234 pe--~s~P~I~LLYrp-GHYdilY~ 255 (256)
T KOG3991|consen 234 PE--ASAPEIYLLYRP-GHYDILYK 255 (256)
T ss_pred cc--ccCceEEEEecC-CccccccC
Confidence 32 356789999987 49999874
No 6
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1e-12 Score=131.92 Aligned_cols=93 Identities=25% Similarity=0.340 Sum_probs=83.5
Q ss_pred cccCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhccccccCHHHHHHhhcCCC
Q 017519 219 VYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPH 298 (370)
Q Consensus 219 ~~~gL~I~~IpGDGNCLFRAVAhQL~~~sG~~~~~~~lrr~~h~~LR~~vvdy~~~nrddfe~FIe~dfdeY~~~M~k~g 298 (370)
...|+.++.|..||||+|||+|+|++.+ .+.|+..|++++|++..+++.|+.|++++|-+|++++++++
T Consensus 214 ~~~g~e~~Kv~edGsC~fra~aDQvy~d-----------~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~ 282 (371)
T KOG2605|consen 214 KHFGFEYKKVVEDGSCLFRALADQVYGD-----------DEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADG 282 (371)
T ss_pred HHhhhhhhhcccCCchhhhccHHHhhcC-----------HHHHHHHHHHHHHHHhhcccccccccccchhhcccccccCC
Confidence 4478999999999999999999999952 47899999999999999999999999999999999999999
Q ss_pred CcCChHHHHHHH---HhcCCCEEEEee
Q 017519 299 VWGGEPELLMAS---HVLRMPITVYMH 322 (370)
Q Consensus 299 tWGGelEL~ALA---~ll~v~I~Vy~~ 322 (370)
.||+|+|+||+| .....++.+.+.
T Consensus 283 ~~gnhie~Qa~a~~~~~~~~~~~~~~~ 309 (371)
T KOG2605|consen 283 EPGNHIEQQAAADIYEEIEKPLNITSF 309 (371)
T ss_pred CCcchHHHhhhhhhhhhccccceeecc
Confidence 999999999999 455666666654
No 7
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=4.8e-11 Score=116.15 Aligned_cols=187 Identities=15% Similarity=0.024 Sum_probs=108.4
Q ss_pred cceeeeecccCCCcccccccCcccccCCCCCCcccceeeeeeecCcccchhhccccccCCCCcc-cchhhcccccccccc
Q 017519 143 RSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSKAHAEAADEKEDGEEDY-DLSNVKYSHGKKVYT 221 (370)
Q Consensus 143 ~~l~~k~~~~~~~~~s~~~~n~~~~~~~~~~~~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~g~~~~~ 221 (370)
+++|+.-++|-+. +-++|+.-.|++.+-.+- . ..-|.+.-+...+.+. .+....+..+... .
T Consensus 107 q~~nv~ed~p~~~---d~srl~q~~~~~l~~asv--------~-----~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~-~ 169 (306)
T COG5539 107 QSINVLEDMPGQD---DNSRLFQAERYSLRDASV--------A-----KLREVVSLEVLSNPDLYNPAILEIDVIAYA-T 169 (306)
T ss_pred cccchhccCCCCC---chHHHHHHHHhhhhhhhH--------H-----HHHHHHHHHHhhCccccchhhcCcchHHHH-H
Confidence 3589988887664 455666667766654211 1 1112221111011111 1111222222222 4
Q ss_pred CcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhcccc--c-----cCHHHHHHhh
Q 017519 222 DYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFI--E-----GDFDLYVSQI 294 (370)
Q Consensus 222 gL~I~~IpGDGNCLFRAVAhQL~~~sG~~~~~~~lrr~~h~~LR~~vvdy~~~nrddfe~FI--e-----~dfdeY~~~M 294 (370)
.+.--+++|||+|+|.+|++||..+.-. -++ +....+|-.-..|-..+...|..+. + ..|++|++.|
T Consensus 170 ~i~k~d~~~dG~ieia~iS~~l~v~i~~----Vdv--~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~ne~ 243 (306)
T COG5539 170 WIVKPDSQGDGCIEIAIISDQLPVRIHV----VDV--DKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVNEV 243 (306)
T ss_pred hhhccccCCCceEEEeEeccccceeeee----eec--chhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHhhh
Confidence 4666799999999999999999865321 111 1112333333333333445555542 1 2699999999
Q ss_pred cCCCCcCChHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEE--c--CCCceeeee
Q 017519 295 RKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLY--H--GFGHYDALQ 359 (370)
Q Consensus 295 ~k~gtWGGelEL~ALA~ll~v~I~Vy~~d~~s~G~i~I~efG~e~~~~~pI~L~Y--h--g~gHYDSL~ 359 (370)
+.+..||+.+|+++||.+|++|++++... ++ ++.|+.- +..-..-+.| | +.||||++.
T Consensus 244 ~~~a~~g~~~ei~qLas~lk~~~~~~nT~----~~--~ik~n~c-~~~~~~e~~~~~Ha~a~GH~n~~~ 305 (306)
T COG5539 244 LFDASDGITIEIQQLASLLKNPHYYTNTA----SP--SIKCNIC-GTGFVGEKDYYAHALATGHYNFGE 305 (306)
T ss_pred cccccccchHHHHHHHHHhcCceEEeecC----Cc--eEEeecc-ccccchhhHHHHHHHhhcCccccC
Confidence 99999999999999999999999999864 22 2334321 1222344555 4 567999874
No 8
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.8e-08 Score=98.36 Aligned_cols=114 Identities=27% Similarity=0.247 Sum_probs=94.3
Q ss_pred eeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhccccc-cCHHHHHHhhcCCCCcC-ChH
Q 017519 227 GIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIE-GDFDLYVSQIRKPHVWG-GEP 304 (370)
Q Consensus 227 ~IpGDGNCLFRAVAhQL~~~sG~~~~~~~lrr~~h~~LR~~vvdy~~~nrddfe~FIe-~dfdeY~~~M~k~gtWG-Gel 304 (370)
+.-.|..|+|+|.+..++. ....+||+.+..+..+|+|.|.+.+. -+--+|+.|+.++..|| |++
T Consensus 116 p~~~d~srl~q~~~~~l~~-------------asv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~i 182 (306)
T COG5539 116 PGQDDNSRLFQAERYSLRD-------------ASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCI 182 (306)
T ss_pred CCCCchHHHHHHHHhhhhh-------------hhHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceE
Confidence 4446899999999988752 25789999999999999999988764 58999999999999999 999
Q ss_pred HHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCceeeeec
Q 017519 305 ELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQN 360 (370)
Q Consensus 305 EL~ALA~ll~v~I~Vy~~d~~s~G~i~I~efG~e~~~~~pI~L~Yhg~gHYDSL~~ 360 (370)
|+.++++.+++.|++...+.+ ....|++.. ....+.+.|.+. |||....
T Consensus 183 eia~iS~~l~v~i~~Vdv~~~-----~~dr~~~~~-~~q~~~i~f~g~-hfD~~t~ 231 (306)
T COG5539 183 EIAIISDQLPVRIHVVDVDKD-----SEDRYNSHP-YVQRISILFTGI-HFDEETL 231 (306)
T ss_pred EEeEeccccceeeeeeecchh-----HHhhccCCh-hhhhhhhhhccc-ccchhhh
Confidence 999999999999999988743 235676543 235678899997 9998874
No 9
>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.
Probab=88.85 E-value=1.5 Score=37.27 Aligned_cols=95 Identities=17% Similarity=0.275 Sum_probs=56.3
Q ss_pred eCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhccccccCHHHHHHhhcC--CCCcCChHH
Q 017519 228 IPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRK--PHVWGGEPE 305 (370)
Q Consensus 228 IpGDGNCLFRAVAhQL~~~sG~~~~~~~lrr~~h~~LR~~vvdy~~~nrddfe~FIe~dfdeY~~~M~k--~gtWGGelE 305 (370)
+..|.|||--||+..|... -+.+.. .|..+. ...+.|+.++++ +.||-+
T Consensus 3 ~sR~NNCLVVAis~~L~~T--------------~e~l~~----~M~An~--------~~i~~y~~W~r~~~~STW~D--- 53 (104)
T PF05415_consen 3 ASRPNNCLVVAISECLGVT--------------LEKLDN----LMQANV--------STIKKYHTWLRKKRPSTWDD--- 53 (104)
T ss_pred ccCCCCeEeehHHHHhcch--------------HHHHHH----HHHhhH--------HHHHHHHHHHhcCCCCcHHH---
Confidence 4679999999999988521 111111 111121 236778887766 679954
Q ss_pred HHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEE----cCCCceee
Q 017519 306 LLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLY----HGFGHYDA 357 (370)
Q Consensus 306 L~ALA~ll~v~I~Vy~~d~~s~G~i~I~efG~e~~~~~pI~L~Y----hg~gHYDS 357 (370)
..++|+.+++.|++-..... +. .+..+++.. ....++| .+.|||-+
T Consensus 54 C~mFA~~LkVsm~vkV~~~~--~~-~l~~~~d~~---~s~v~~~~~~Ke~dGHF~a 103 (104)
T PF05415_consen 54 CRMFADALKVSMQVKVLSDK--PY-DLLYFVDGA---VSVVTLHLEGKESDGHFIA 103 (104)
T ss_pred HHHHHHhheeEEEEEEcCCC--Cc-eeeEeecCc---cceehhhhhccccCCceec
Confidence 46889999999988654322 22 234455432 2333444 26779854
No 10
>PF05381 Peptidase_C21: Tymovirus endopeptidase; InterPro: IPR008043 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry is found in cysteine peptidases belong to the MEROPS peptidase family C21 (tymovirus endopeptidase family, clan CA). The type example is tymovirus endopeptidase (turnip yellow mosaic virus). The noncapsid protein expressed from ORF-206 of turnip yellow mosaic virus (TYMV) is autocatalytically processed by a papain-like protease, producing N-terminal 150kDa and C-terminal 70kDa proteins.; GO: 0003968 RNA-directed RNA polymerase activity, 0016032 viral reproduction
Probab=46.17 E-value=1.2e+02 Score=26.44 Aligned_cols=91 Identities=16% Similarity=0.242 Sum_probs=55.6
Q ss_pred CCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhccccccCHHHHHHhhcCCCCcCChHHHHHHH
Q 017519 231 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMAS 310 (370)
Q Consensus 231 DGNCLFRAVAhQL~~~sG~~~~~~~lrr~~h~~LR~~vvdy~~~nrddfe~FIe~dfdeY~~~M~k~gtWGGelEL~ALA 310 (370)
.-+||--||+.|.... .+++-..|....-|-++.|++. ++-|- .--.+.|||
T Consensus 2 ~~~CLL~A~s~at~~~----------~~~LW~~L~~~lPDSlL~n~ei----------------~~~GL--STDhltaLa 53 (104)
T PF05381_consen 2 ALDCLLVAISQATSIS----------PETLWATLCEILPDSLLDNPEI----------------RTLGL--STDHLTALA 53 (104)
T ss_pred CcceeHHhhhhhhCCC----------HHHHHHHHHHhCchhhcCchhh----------------hhcCC--cHHHHHHHH
Confidence 4589999999998532 1344455555554544444432 11111 122478999
Q ss_pred HhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcC--CCceee
Q 017519 311 HVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHG--FGHYDA 357 (370)
Q Consensus 311 ~ll~v~I~Vy~~d~~s~G~i~I~efG~e~~~~~pI~L~Yhg--~gHYDS 357 (370)
..|+....+.... + ..+||-.+ ....+.|-|.. .+||..
T Consensus 54 ~~~~~~~~~hs~~----~---~~~~Gi~~-as~~~~I~ht~G~p~HFs~ 94 (104)
T PF05381_consen 54 YRYHFQCTFHSDH----G---VLHYGIKD-ASTVFTITHTPGPPGHFSL 94 (104)
T ss_pred HHHheEEEEEcCC----c---eEEeecCC-CceEEEEEeCCCCCCcccc
Confidence 9999999998743 2 35788764 34556666652 359998
No 11
>PRK09784 hypothetical protein; Provisional
Probab=29.84 E-value=28 Score=34.84 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=20.5
Q ss_pred ccccCcEEEeeCCCCchHhHHHHH
Q 017519 218 KVYTDYSVIGIPGDGRCLFRAVAH 241 (370)
Q Consensus 218 ~~~~gL~I~~IpGDGNCLFRAVAh 241 (370)
+...||+--+|.|||-||.|||--
T Consensus 195 n~~~glkyapvdgdgycllrailv 218 (417)
T PRK09784 195 NKTYGLKYAPVDGDGYCLLRAILV 218 (417)
T ss_pred hhhhCceecccCCCchhHHHHHHH
Confidence 344789999999999999999864
No 12
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=27.19 E-value=29 Score=35.95 Aligned_cols=43 Identities=33% Similarity=0.391 Sum_probs=39.4
Q ss_pred ccccccCHHHHHHhhcCCCCcCChHHHHHHHHhcCCCEEEEee
Q 017519 280 EWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMH 322 (370)
Q Consensus 280 e~FIe~dfdeY~~~M~k~gtWGGelEL~ALA~ll~v~I~Vy~~ 322 (370)
..++.++|+.|+..+.++.+-|+-+||.+++.+++.+.+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~r~~~~~~~~ 45 (371)
T KOG2605|consen 3 REEVSGDFDWYLWDLGKTKTLGTILELGAMSHVYRRNVIDYEP 45 (371)
T ss_pred ccccCchHHHHhhcCCCCcccccchhhhhccccccCCCCCcCC
Confidence 4556789999999999999999999999999999999999875
No 13
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=24.50 E-value=52 Score=28.74 Aligned_cols=16 Identities=38% Similarity=0.725 Sum_probs=14.0
Q ss_pred CCCCchHhHHHHHhhh
Q 017519 229 PGDGRCLFRAVAHGAC 244 (370)
Q Consensus 229 pGDGNCLFRAVAhQL~ 244 (370)
|+||+|-+|.|+.-++
T Consensus 5 P~DG~CG~H~i~aI~n 20 (108)
T PF05412_consen 5 PGDGSCGWHCIAAIMN 20 (108)
T ss_pred CCCCchHHHHHHHHHH
Confidence 7899999999997665
No 14
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=21.15 E-value=54 Score=33.23 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhcChhhhccccc
Q 017519 260 LADDLRAKVADEFIKRREETEWFIE 284 (370)
Q Consensus 260 ~h~~LR~~vvdy~~~nrddfe~FIe 284 (370)
.+..||...++||.+|.++|.||+.
T Consensus 188 ~v~kLR~~~a~Ymr~H~~df~pf~~ 212 (302)
T KOG2606|consen 188 SVQKLREETADYMREHVEDFLPFLL 212 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHhc
Confidence 3568999999999999999999874
No 15
>PF07418 PCEMA1: Acidic phosphoprotein precursor PCEMA1; InterPro: IPR010882 This family consists of several acidic phosphoprotein precursor PCEMA1 sequences which appear to be found exclusively in Plasmodium chabaudi. PCEMA1 is an antigen that is associated with the membrane of the infected erythrocyte throughout the entire intraerythrocytic cycle []. The exact function of this family is unclear.
Probab=20.52 E-value=63 Score=32.40 Aligned_cols=39 Identities=26% Similarity=0.465 Sum_probs=30.6
Q ss_pred ceEEecccccccccceeeeeeec-----CCCceeeeecccCcccccccc
Q 017519 42 NVVNLGGRFQGQMGGNICGVTYR-----GPSSSCCFYLCSGQSKKNYAG 85 (370)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 85 (370)
|||+|+ +..|-||.+|-. --||--||+.|+-+.++.++-
T Consensus 2 k~islg-----lissiifsivlakn~s~s~sttgcF~f~rkK~kk~~~~ 45 (282)
T PF07418_consen 2 KVISLG-----LISSIIFSIVLAKNSSGSGSTTGCFGFCRKKPKKIHKT 45 (282)
T ss_pred ceeeec-----chhhhheeeEEeccCCCCCCccceehhhcccccccccc
Confidence 678886 888999988743 345678999999999988764
Done!