Query 017519
Match_columns 370
No_of_seqs 133 out of 942
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 15:44:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 100.0 3.4E-35 1.2E-39 267.2 8.6 141 208-363 44-184 (185)
2 3by4_A OTU1, ubiquitin thioest 100.0 3.9E-32 1.3E-36 250.9 9.9 121 221-360 18-139 (212)
3 3phx_A RNA-directed RNA polyme 100.0 5E-31 1.7E-35 239.3 14.5 143 217-368 25-167 (185)
4 3phu_A RNA-directed RNA polyme 100.0 3E-30 1E-34 240.2 16.6 143 216-367 24-166 (219)
5 1tff_A Ubiquitin thiolesterase 99.9 8.6E-22 2.9E-26 184.2 13.8 99 260-362 131-232 (234)
6 4dhi_B Ubiquitin thioesterase 99.8 6.3E-19 2.1E-23 169.7 14.3 103 259-362 168-275 (284)
7 4ddg_A Ubiquitin-conjugating e 99.8 1.5E-18 5.1E-23 172.8 14.3 97 260-359 299-398 (399)
8 2zfy_A Ubiquitin thioesterase 99.8 2.3E-18 7.8E-23 160.8 12.3 115 230-359 116-233 (234)
9 3dkb_A Tumor necrosis factor, 98.4 1.5E-06 5E-11 86.5 11.0 140 223-366 112-288 (390)
10 3zrh_A Ubiquitin thioesterase 98.0 2.8E-05 9.6E-10 78.5 10.8 137 223-364 189-352 (454)
11 2zfy_A Ubiquitin thioesterase 96.1 0.0029 1E-07 58.8 3.1 22 224-245 44-65 (234)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=100.00 E-value=3.4e-35 Score=267.22 Aligned_cols=141 Identities=23% Similarity=0.406 Sum_probs=103.0
Q ss_pred chhhccccccccccCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhccccccCH
Q 017519 208 LSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDF 287 (370)
Q Consensus 208 ~~~~~~~~g~~~~~gL~I~~IpGDGNCLFRAVAhQL~~~sG~~~~~~~lrr~~h~~LR~~vvdy~~~nrddfe~FIe~df 287 (370)
+++..|...+....||++++||+||||||||||+||+. . ++.|.+||+.+++||.+|+++|++|++++|
T Consensus 44 ~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g---~--------~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~ 112 (185)
T 3pfy_A 44 QQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYG---D--------QDMHEVVRKHCMDYLMKNADYFSNYVTEDF 112 (185)
T ss_dssp HHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHS---C--------GGGHHHHHHHHHHHHHHTHHHHTTCC----
T ss_pred HHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhC---C--------chHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 44556777777779999999999999999999999983 2 245899999999999999999999999999
Q ss_pred HHHHHhhcCCCCcCChHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCceeeeecCCC
Q 017519 288 DLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGH 363 (370)
Q Consensus 288 deY~~~M~k~gtWGGelEL~ALA~ll~v~I~Vy~~d~~s~G~i~I~efG~e~~~~~pI~L~Yhg~gHYDSL~~~~~ 363 (370)
++||++|+++++|||++||+|||++|+++|.||+.+. ..+.+. .|.+....++|+|+||+.+|||||+.|.+
T Consensus 113 e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~---~~i~i~-~g~~~~~~~~I~L~Y~~~~HYnSv~~p~~ 184 (185)
T 3pfy_A 113 TTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYST---EPINTF-HGIHQNEDEPIRVSYHRNIHYNSVVNPNK 184 (185)
T ss_dssp -------------CCHHHHHHHHHHHTSCEEEESSCS---SCSEEE-CTTSCCTTSCEEEEEETTTEEEEEECC--
T ss_pred HHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCC---CCeEEe-cCccCCCCCEEEEEECCCCCcccccCCCC
Confidence 9999999999999999999999999999999998752 233332 24444457899999998889999998764
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.97 E-value=3.9e-32 Score=250.89 Aligned_cols=121 Identities=28% Similarity=0.421 Sum_probs=106.6
Q ss_pred cCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhc-cccccCHHHHHHhhcCCCC
Q 017519 221 TDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETE-WFIEGDFDLYVSQIRKPHV 299 (370)
Q Consensus 221 ~gL~I~~IpGDGNCLFRAVAhQL~~~sG~~~~~~~lrr~~h~~LR~~vvdy~~~nrddfe-~FIe~dfdeY~~~M~k~gt 299 (370)
.+|.+++||+||||||||||+|| .. + ..|.+||+.+++||.+|+++|. .|++++|++||++|+++++
T Consensus 18 ~~l~~~~i~~DGnCLFrAva~qL-~~---~--------~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~ 85 (212)
T 3by4_A 18 NVLSVHPVLDDNSCLFHAIAYGI-FK---Q--------DSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMES 85 (212)
T ss_dssp SEEEEECCCCSTTHHHHHHHHHH-HS---S--------CCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTS
T ss_pred CCeEEEEeCCCCchHHHHHHHHh-CC---c--------hHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCE
Confidence 46899999999999999999999 42 1 2378999999999999999995 6788999999999999999
Q ss_pred cCChHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCceeeeec
Q 017519 300 WGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQN 360 (370)
Q Consensus 300 WGGelEL~ALA~ll~v~I~Vy~~d~~s~G~i~I~efG~e~~~~~pI~L~Yhg~gHYDSL~~ 360 (370)
|||++||+|||++|+++|.||+.+ .+. +..||++. ..++|+|+|++ +|||||+.
T Consensus 86 WGg~iEL~Als~~~~~~I~V~~~~---~~~--~~~~~~~~-~~~~I~L~Y~g-~HYdsl~~ 139 (212)
T 3by4_A 86 WGGAIEIGIISDALAVAIYVVDID---AVK--IEKFNEDK-FDNYILILFNG-IHYDSLTM 139 (212)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEETT---TTE--EEEESTTT-CSEEEEEEECS-SCEEEEEE
T ss_pred EccHHHHHHHHHHHCCCEEEEECC---CCC--eEEeCCCC-CCCeEEEEEcC-CcceEEec
Confidence 999999999999999999999874 233 56788775 56899999996 59999987
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.97 E-value=5e-31 Score=239.28 Aligned_cols=143 Identities=16% Similarity=0.285 Sum_probs=114.3
Q ss_pred cccccCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhccccccCHHHHHHhhcC
Q 017519 217 KKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRK 296 (370)
Q Consensus 217 ~~~~~gL~I~~IpGDGNCLFRAVAhQL~~~sG~~~~~~~lrr~~h~~LR~~vvdy~~~nrddfe~FIe~dfdeY~~~M~k 296 (370)
..+..+|.+.+|||||||||||||+||+.. .+.+ . .+..|.+||+.+++||.+|+++ .+++++|++||++|++
T Consensus 25 ~~~~~~~~v~rv~gDGnCLFrAva~qL~~~--~~~~--~-~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~ 97 (185)
T 3phx_A 25 FNISDYFEIVRQPGDGNCFYHSIAELTMPN--KTDH--S-YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLS 97 (185)
T ss_dssp CBHHHHEEEECCCSSTTHHHHHHHHHHSTT--CCTT--T-HHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTS
T ss_pred cccccCeEEEccCCCCchHHHHHHHHHhCC--Cccc--h-hhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhC
Confidence 344456899999999999999999999842 1211 1 1456999999999999999998 4578999999999999
Q ss_pred CCCcCChHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCceeeeecCCCCCCCC
Q 017519 297 PHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGIS 368 (370)
Q Consensus 297 ~gtWGGelEL~ALA~ll~v~I~Vy~~d~~s~G~i~I~efG~e~~~~~pI~L~Yhg~gHYDSL~~~~~~gp~~ 368 (370)
+++|||++||+|||++|+++|+||+.+.+. .++.+..|+++. ..++|+|+|++.+|||+|+......|..
T Consensus 98 ~~~WGg~iEL~Als~~~~v~I~V~~~d~~~-~~~~i~~f~~~~-~~~~I~L~Y~g~~HYdsl~~~~~~~~~~ 167 (185)
T 3phx_A 98 DNEWGSTLEASMLAKEMGITIIIWTVAASD-EVEAGIKFGDGD-VFTAVNLLHSGQTHFDALRILPQFETDT 167 (185)
T ss_dssp TTCCCBHHHHHHHHHHHCCCEEEEEC--CC-BCCEEEEESSCC-TTTSEEEEEETTTEEEEEEECGGGC---
T ss_pred CCccCcHHHHHHHHHHHCCcEEEEEecCCC-CceEEEEcCCCC-CCCEEEEEECCCcCchhceECCCCCCCC
Confidence 999999999999999999999999986442 234567888764 3689999999977999999876654443
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.97 E-value=3e-30 Score=240.18 Aligned_cols=143 Identities=16% Similarity=0.280 Sum_probs=117.1
Q ss_pred ccccccCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhccccccCHHHHHHhhc
Q 017519 216 GKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIR 295 (370)
Q Consensus 216 g~~~~~gL~I~~IpGDGNCLFRAVAhQL~~~sG~~~~~~~lrr~~h~~LR~~vvdy~~~nrddfe~FIe~dfdeY~~~M~ 295 (370)
...+..+|.+++||||||||||||++||+.. .+.+ . .+..|.+||+.+++||.+|+++ .+++++|++||++|+
T Consensus 24 ~~~~~~~~~V~rvpgDGnCLFrAVs~qL~~~--~~~~--~-~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~ 96 (219)
T 3phu_A 24 RFNISDYFEIVRQPGDGNCFYHSIAELTMPN--KTDH--S-YHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRML 96 (219)
T ss_dssp CCBHHHHEEEECCCCSSCHHHHHHHHHHCTT--CCTT--T-HHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHH
T ss_pred CcccccceEEEccCCCCchHHHHHHHHHhCC--Cccc--h-hhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhc
Confidence 3344456999999999999999999999742 1211 1 1356999999999999999998 457899999999999
Q ss_pred CCCCcCChHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCceeeeecCCCCCCC
Q 017519 296 KPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGI 367 (370)
Q Consensus 296 k~gtWGGelEL~ALA~ll~v~I~Vy~~d~~s~G~i~I~efG~e~~~~~pI~L~Yhg~gHYDSL~~~~~~gp~ 367 (370)
++++|||++||+|+|++|+++|+||+.+.+ +..+.+..||++. ..++|+|+|++.+|||+|+......+.
T Consensus 97 ~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~-g~~~~i~~fge~~-~~~~I~L~Y~g~~HYdSL~~~~d~~~~ 166 (219)
T 3phu_A 97 SDNEWGSTLEASMLAKEMGITIIIWTVAAS-DEVEAGIKFGDGD-VFTAVNLLHSGQTHFDALRILPQFETD 166 (219)
T ss_dssp STTCCCCHHHHHHHHHHTTCCEEEEEESSS-SBEEEEEEESSCC-TTTSEEEEEETTTEEEEEEECTTTCCS
T ss_pred CCCccCCHHHHHHHHHHhCCCEEEEEecCC-CCceeEEEecCCC-CCCeEEEEECCCcCchhheECCCCCCC
Confidence 999999999999999999999999998743 2245577898765 368999999997799999997666443
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.87 E-value=8.6e-22 Score=184.22 Aligned_cols=99 Identities=15% Similarity=0.215 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhcChhhhcccccc--CHHHHHH-hhcCCCCcCChHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcC
Q 017519 260 LADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYG 336 (370)
Q Consensus 260 ~h~~LR~~vvdy~~~nrddfe~FIe~--dfdeY~~-~M~k~gtWGGelEL~ALA~ll~v~I~Vy~~d~~s~G~i~I~efG 336 (370)
....||..++.||.+|+++|+||+++ ++++||+ .++.+++||||+||+|||+.|+++|.|++.+.+. +.+....|+
T Consensus 131 iv~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~-~~~~~~~~~ 209 (234)
T 1tff_A 131 IVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD-TALNHHVFP 209 (234)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--------CCCCC
T ss_pred HHHHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCC-CccccccCC
Confidence 45689999999999999999999976 7999999 8999999999999999999999999999987543 223334454
Q ss_pred CCCCCCCeEEEEEcCCCceeeeecCC
Q 017519 337 QEYGKEKPIRVLYHGFGHYDALQNLG 362 (370)
Q Consensus 337 ~e~~~~~pI~L~Yhg~gHYDSL~~~~ 362 (370)
++ ..+.|+|+|++ ||||+|+..+
T Consensus 210 ~~--~~~~I~LlY~p-gHYdily~~~ 232 (234)
T 1tff_A 210 EA--ATPSVYLLYKT-SHYNILYAAD 232 (234)
T ss_dssp CC--SSCSEEEEEET-TEEEEEEECC
T ss_pred CC--CCCeEEEEECC-CCceecccCC
Confidence 32 45779999997 4999998643
No 6
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.79 E-value=6.3e-19 Score=169.72 Aligned_cols=103 Identities=16% Similarity=0.107 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHhcChhhhcccccc--CHHHHHH-hhcCCCCcCChHHHHHHHHhcCCCEEEEeecCCCCCceEEEE-
Q 017519 259 ELADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAE- 334 (370)
Q Consensus 259 ~~h~~LR~~vvdy~~~nrddfe~FIe~--dfdeY~~-~M~k~gtWGGelEL~ALA~ll~v~I~Vy~~d~~s~G~i~I~e- 334 (370)
.....||..++.||..|+++|+||+++ ++++||+ +++.+++||||+||+|||++|+++|.|.+.|.+.++.+..+.
T Consensus 168 ~iv~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~ 247 (284)
T 4dhi_B 168 YILMFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYD 247 (284)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEE
T ss_pred HHHHHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCccccc
Confidence 345689999999999999999999975 7999999 899999999999999999999999999998875444333344
Q ss_pred cCCCC-CCCCeEEEEEcCCCceeeeecCC
Q 017519 335 YGQEY-GKEKPIRVLYHGFGHYDALQNLG 362 (370)
Q Consensus 335 fG~e~-~~~~pI~L~Yhg~gHYDSL~~~~ 362 (370)
|.++. ...+.|+|+|.+ ||||.|+..+
T Consensus 248 fp~~~~~~~p~I~LLYrp-gHYDILY~~~ 275 (284)
T 4dhi_B 248 IPSDDQQIAPEITLLYRP-GHYDVIYKKD 275 (284)
T ss_dssp ESCCCSCCCCSEEEEEET-TEEEEEEECC
T ss_pred CCCCCCCCCCEEEEeecC-CCccccccCC
Confidence 53221 123679999999 5999998543
No 7
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.78 E-value=1.5e-18 Score=172.77 Aligned_cols=97 Identities=23% Similarity=0.335 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhcChhhhcccccc--CHHHHHH-hhcCCCCcCChHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcC
Q 017519 260 LADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYG 336 (370)
Q Consensus 260 ~h~~LR~~vvdy~~~nrddfe~FIe~--dfdeY~~-~M~k~gtWGGelEL~ALA~ll~v~I~Vy~~d~~s~G~i~I~efG 336 (370)
....||..+..||..|+++|++|+++ ++++||+ +|+..++||||+||+|||+.|+++|.|+..|...++.+....|+
T Consensus 299 iv~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~ 378 (399)
T 4ddg_A 299 LVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFP 378 (399)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETT
T ss_pred HHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCC
Confidence 46689999999999999999999976 6999999 99999999999999999999999999998876544445445564
Q ss_pred CCCCCCCeEEEEEcCCCceeeee
Q 017519 337 QEYGKEKPIRVLYHGFGHYDALQ 359 (370)
Q Consensus 337 ~e~~~~~pI~L~Yhg~gHYDSL~ 359 (370)
++ ..+.|+|+|.. ||||.|+
T Consensus 379 ~~--~~~~I~LLYrP-gHYDiLY 398 (399)
T 4ddg_A 379 EG--SEPKVYLLYRP-GHYDILY 398 (399)
T ss_dssp TT--CCCCCEEEEET-BEEEEEE
T ss_pred CC--CCCEEEEEEcC-CccccCC
Confidence 33 46789999977 5999997
No 8
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.76 E-value=2.3e-18 Score=160.85 Aligned_cols=115 Identities=20% Similarity=0.265 Sum_probs=98.4
Q ss_pred CCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhcccccc--CHHHHHH-hhcCCCCcCChHHH
Q 017519 230 GDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEG--DFDLYVS-QIRKPHVWGGEPEL 306 (370)
Q Consensus 230 GDGNCLFRAVAhQL~~~sG~~~~~~~lrr~~h~~LR~~vvdy~~~nrddfe~FIe~--dfdeY~~-~M~k~gtWGGelEL 306 (370)
.||+||++++.+|... ......||..+++||.+|+++|+||+++ ++++||+ .++.+++||||+||
T Consensus 116 ~~~~~L~~~fndq~~s------------~~~v~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i 183 (234)
T 2zfy_A 116 TSVADLLASFNDQSTS------------DYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHI 183 (234)
T ss_dssp CCHHHHHHHHTSHHHH------------HHHHHHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHH
T ss_pred CCHHHHHHHHHhhccc------------hHHHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHH
Confidence 3999999999999752 2567899999999999999999999976 7999997 69999999999999
Q ss_pred HHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCceeeee
Q 017519 307 LMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQ 359 (370)
Q Consensus 307 ~ALA~ll~v~I~Vy~~d~~s~G~i~I~efG~e~~~~~pI~L~Yhg~gHYDSL~ 359 (370)
+|||++|+++|.|++.+...++.+....|+++ ..++|+|+|+. ||||+|+
T Consensus 184 ~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~--~~p~I~LlY~p-gHYdiLy 233 (234)
T 2zfy_A 184 IALAQALSVSIQVEYMDRGEGGTTNPHIFPEG--SEPKVYLLYRP-GHYDILY 233 (234)
T ss_dssp HHHHHHHTCCEEEEECC-CCSSCCEEEEESTT--CCCSEEEEEET-TEEEEEE
T ss_pred HHHHHHhCCCEEEEEcCCCCCCcccceeCCCC--CCCeEEEEECC-CCcccCC
Confidence 99999999999999988664444555677653 45789999997 5999997
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.38 E-value=1.5e-06 Score=86.46 Aligned_cols=140 Identities=20% Similarity=0.342 Sum_probs=86.3
Q ss_pred cEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChh----hhccc-------c----ccCH
Q 017519 223 YSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRRE----ETEWF-------I----EGDF 287 (370)
Q Consensus 223 L~I~~IpGDGNCLFRAVAhQL~~~sG~~~~~~~lrr~~h~~LR~~vvdy~~~nrd----dfe~F-------I----e~df 287 (370)
|......||||||.+|++..++ |-++.+..+|+.++..||+.....|+.+.. ..+.| . ..+|
T Consensus 112 L~pL~t~GDGnCLLHAvSqamW---Gv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW 188 (390)
T 3dkb_A 112 LVALKTNGDGNCLMHATSQYMW---GVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEW 188 (390)
T ss_dssp EEEBCCCCSSCHHHHHHHHHHH---SSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHH
T ss_pred eEEEEecCCCchHHHHHhHHhc---CCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHH
Confidence 6667889999999999999999 666666778888888887643223322110 01111 1 2356
Q ss_pred HHHHHhhcCCC------C-c--CChHHHHHHHHhcCCCEEEEeecC----CCCCceEEEEcCC---------CCCCCCeE
Q 017519 288 DLYVSQIRKPH------V-W--GGEPELLMASHVLRMPITVYMHDK----DAGGLISIAEYGQ---------EYGKEKPI 345 (370)
Q Consensus 288 deY~~~M~k~g------t-W--GGelEL~ALA~ll~v~I~Vy~~d~----~s~G~i~I~efG~---------e~~~~~pI 345 (370)
++-++.-+.+. . + =-++-+.+||+++++||+||.... ..++.+..+.|+. +.=...||
T Consensus 189 ~~Iv~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI 268 (390)
T 3dkb_A 189 DNLIKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPI 268 (390)
T ss_dssp HHHHHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCE
T ss_pred HHHHHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCce
Confidence 66555444321 1 1 236668999999999999995321 1122221122221 11125799
Q ss_pred EEEEcCCCceeeeecCCCCCC
Q 017519 346 RVLYHGFGHYDALQNLGHEGG 366 (370)
Q Consensus 346 ~L~Yhg~gHYDSL~~~~~~gp 366 (370)
.|+|+. |||.+|+.-..++|
T Consensus 269 ~LgY~s-~HFsaLV~me~~~~ 288 (390)
T 3dkb_A 269 VLGYDS-HHFVPLVTLKDSGP 288 (390)
T ss_dssp EEEECS-SCEEEEEEBCSSSS
T ss_pred EEEecc-CceeeeeecccCCC
Confidence 999998 59999987655554
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=97.99 E-value=2.8e-05 Score=78.53 Aligned_cols=137 Identities=22% Similarity=0.336 Sum_probs=89.6
Q ss_pred cEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhh--------h-cccc--c----cCH
Q 017519 223 YSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREE--------T-EWFI--E----GDF 287 (370)
Q Consensus 223 L~I~~IpGDGNCLFRAVAhQL~~~sG~~~~~~~lrr~~h~~LR~~vvdy~~~nrdd--------f-e~FI--e----~df 287 (370)
|......||||||-+|++..++ |.++.+..+|+.++..|++.- ..|..+... + -.|. + ++|
T Consensus 189 L~pL~t~GDGNCLLHAvSqamW---GV~DrdlvLRkaL~~~L~~~~-~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW 264 (454)
T 3zrh_A 189 LYALWNRTAGDCLLDSVLQATW---GIYDKDSVLRKALHDSLHDCS-HWFYTRWKDWESWYSQSFGLHFSLREEQWQEDW 264 (454)
T ss_dssp EEEBCCCCSSCHHHHHHHHTTT---SSCCGGGHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHH
T ss_pred eeEeeecCCCccHHHHHHHHhh---cccCCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhhcCCcccccHHHHHHHH
Confidence 5567889999999999999998 767777778888888887642 223333221 1 1222 2 357
Q ss_pred HHHHHhhcCCCCcCChHHHHHHHHhcCCCEEEEeecCCC--CC-ceEEEEcCCCC---------CCCCeEEEEEcCCCce
Q 017519 288 DLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDA--GG-LISIAEYGQEY---------GKEKPIRVLYHGFGHY 355 (370)
Q Consensus 288 deY~~~M~k~gtWGGelEL~ALA~ll~v~I~Vy~~d~~s--~G-~i~I~efG~e~---------~~~~pI~L~Yhg~gHY 355 (370)
+.-++.-+.||+==-++-+.+||+++++||+||....-. .| .+..+.|+.=| =...||.|.|+.. ||
T Consensus 265 ~~iv~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~g-HF 343 (454)
T 3zrh_A 265 AFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTRG-HF 343 (454)
T ss_dssp HHHHHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEETT-EE
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEeccc-ce
Confidence 777776677776556677899999999999999742110 01 11111122111 1257999999984 99
Q ss_pred eeeecCCCC
Q 017519 356 DALQNLGHE 364 (370)
Q Consensus 356 DSL~~~~~~ 364 (370)
.+|+.-..+
T Consensus 344 saLV~~~~~ 352 (454)
T 3zrh_A 344 SALVAMEND 352 (454)
T ss_dssp EEEEEBCCC
T ss_pred eeeeecccc
Confidence 999875443
No 11
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=96.07 E-value=0.0029 Score=58.82 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.5
Q ss_pred EEEeeCCCCchHhHHHHHhhhh
Q 017519 224 SVIGIPGDGRCLFRAVAHGACL 245 (370)
Q Consensus 224 ~I~~IpGDGNCLFRAVAhQL~~ 245 (370)
.++.|.|||||+|||++.+...
T Consensus 44 ~~R~vRgDGNCFyRaf~f~ylE 65 (234)
T 2zfy_A 44 YIRKTRPDGNCFYRAFGFSHLE 65 (234)
T ss_dssp EEECBCCSSCHHHHHHHHHHHH
T ss_pred ceeeccCCccHHHHHHHHHHHH
Confidence 6789999999999999988753
Done!