BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017520
(370 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 103/246 (41%), Gaps = 22/246 (8%)
Query: 50 SPVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTW 109
SP+L E+ A A F +G +D + K Y G++ +
Sbjct: 6 SPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIK----YEGPNSGFVDFAYASPY 61
Query: 110 VNWKFIDSQT------LVGLT-----STKEGHLIICDNANGLHKVSEDG--VENFLSYVN 156
N F ++ T L G T + + L I D L V +G + V+
Sbjct: 62 WNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVD 121
Query: 157 GSKLRFANDV-VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 215
G ++ V V+ G +YFT S+ Y + G+L+KYDPS+ TTL+
Sbjct: 122 GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 181
Query: 216 DGFYFANGVALSRDEDYVVVCE--SWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 273
+ G +S D +V+V E S + KYWL+G +KG E + +P P NI D
Sbjct: 182 KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNAD 239
Query: 274 GTFWIA 279
G FW++
Sbjct: 240 GHFWVS 245
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 97/233 (41%), Gaps = 37/233 (15%)
Query: 82 EDASMDKNGVIYTATRDGWIKRLQDGTWVNWK-----FID-------------------- 116
E S N + +T G+ +QDG + ++ F+D
Sbjct: 6 EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAE 65
Query: 117 SQTLVGLT-----STKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDV-VE 168
+ L G T + + L I D L V +G + V+G ++ V V+
Sbjct: 66 KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 125
Query: 169 ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 228
G +YFT S+ Y + G+L+KYDPS+ TTL+ + G +S
Sbjct: 126 QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 185
Query: 229 DEDYVVVCE--SWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 279
D +V+V E S + KYWL+G +KG E + +P P NI DG FW++
Sbjct: 186 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVS 236
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 166 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA 225
V+ G +YFT S+ Y G+L KYDPS+ TTL+ + G
Sbjct: 132 TVDQRTGIVYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAE 191
Query: 226 LSRDEDYVVVCE--SWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 279
+S D +V+V E S + KYWL+G +KG E + +P P NI DG FW++
Sbjct: 192 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVS 245
>pdb|3E5Z|A Chain A, X-Ray Structure Of The Putative Gluconolactonase In
Protein Family Pf08450. Northeast Structural Genomics
Consortium Target Drr130.
pdb|3E5Z|B Chain B, X-Ray Structure Of The Putative Gluconolactonase In
Protein Family Pf08450. Northeast Structural Genomics
Consortium Target Drr130
Length = 296
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 8/122 (6%)
Query: 59 PAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQ 118
PA A +L D EG V P ++ VI++ R D ++ + S
Sbjct: 15 PAGAEARRLADGFTWTEGPVYVPA-----RSAVIFSDVRQNRTWAWSDDGQLSPEXHPSH 69
Query: 119 TLVGLTSTKEGHLIICDNA-NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLY 175
G K+GHLI C + L + E G E+ G KL NDV A DGSL+
Sbjct: 70 HQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLW 129
Query: 176 FT 177
F+
Sbjct: 130 FS 131
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 219 YFANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPG----APDNINLAPDG 274
+ NG L++ + +++ C S R+ + E G+ E+ A++ G +P+++ LAPDG
Sbjct: 69 HHQNGHCLNK-QGHLIAC-SHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG 126
Query: 275 TFWIA 279
+ W +
Sbjct: 127 SLWFS 131
>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|B Chain B, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|C Chain C, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|D Chain D, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|E Chain E, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|F Chain F, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
Length = 333
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 64/167 (38%), Gaps = 25/167 (14%)
Query: 127 KEGHLIIC-----DNANGLHKVSEDGVENFLSYVNGSKLRFA-NDVVEASDGSLYFTVSS 180
K+G L +C + G+ +E+G +N + + ND+V S G YFT
Sbjct: 96 KDGRLFVCYLGDFKSTGGIFAATENG-DNLQDIIEDLSTAYCINDMVFDSKGGFYFTDFR 154
Query: 181 SKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 240
P G + P T + ANG+ALS DE + V E+
Sbjct: 155 G-----------YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTA 203
Query: 241 CRKYWLKGERKG-KLETFAENLP------GAPDNINLAPDGTFWIAI 280
R + + E G ++ F +P PD+ + D ++A+
Sbjct: 204 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM 250
>pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
Length = 333
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 25/167 (14%)
Query: 127 KEGHLIIC-----DNANGLHKVSEDGVENFLSYVNGSKLRFA-NDVVEASDGSLYFTVSS 180
K+G L +C + G+ +E+G +N + + +D+V S G YFT
Sbjct: 96 KDGRLFVCYLGDFKSTGGIFAATENG-DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFR 154
Query: 181 SKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 240
P G + P T + ANG+ALS DE + V E+
Sbjct: 155 G-----------YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTA 203
Query: 241 CRKYWLKGERKG-KLETFAENLP------GAPDNINLAPDGTFWIAI 280
R + + E G ++ F +P PD+ + D ++A+
Sbjct: 204 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM 250
>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|G Chain G, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|H Chain H, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|I Chain I, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|J Chain J, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|K Chain K, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|L Chain L, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
Length = 333
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 25/166 (15%)
Query: 127 KEGHLIIC-----DNANGLHKVSEDGVENFLSYVNGSKLRFA-NDVVEASDGSLYFTVSS 180
K+G L +C + G+ +E+G +N + + +D V S G YFT
Sbjct: 96 KDGRLFVCYLGDFKSTGGIFAATENG-DNLQDIIEDLSTAYCIDDXVFDSKGGFYFTDFR 154
Query: 181 SKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 240
P G + P T + ANG+ALS DE + V E+
Sbjct: 155 G-----------YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTA 203
Query: 241 CRKYWLKGERKG-KLETFAENLP------GAPDNINLAPDGTFWIA 279
R + + E G ++ F +P PD+ + D ++A
Sbjct: 204 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVA 249
>pdb|1V04|A Chain A, Serum Paraoxonase By Directed Evolution
pdb|3SRE|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5
pdb|3SRG|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5 In
Complex With 2- Hydroxyquinoline
Length = 355
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 207 SSNITTLVADGFYFANGVALSRDEDYVVVCE 237
S N +VA+GF FANG+ +S D YV + E
Sbjct: 209 SPNDVRVVAEGFDFANGINISPDGKYVYIAE 239
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 155 VNGSKLRFAN-----DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPS 207
+ G K+R+A D V SD Y + ++Y + H Y LD++E PH +L+
Sbjct: 64 IGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLP 123
Query: 208 SNITTLVADGFYF 220
+N T + F
Sbjct: 124 ANKTVALGSNVEF 136
>pdb|2PX9|A Chain A, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
Length = 217
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 11/67 (16%)
Query: 301 LAAYPKLFSQFI-TLGGGAHLIHVAEDG---TIIRNLVDPTGQLMSFVTSGLQVDNHLYV 356
+ +Y +LFS+ I TL +H+AE G +I + DP+ M FVTS + H++
Sbjct: 150 VKSYARLFSKSIETL-----RVHLAEKGDGAELIWDKDDPSA--MDFVTSAANLRMHIFS 202
Query: 357 ISLTSNF 363
+++ S F
Sbjct: 203 MNMKSRF 209
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 155 VNGSKLRFAN-----DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPS 207
+ G K+R+A D V SD Y + ++Y + H Y LD++E PH +L+
Sbjct: 63 IGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLP 122
Query: 208 SNITTLVADGFYF 220
+N T + F
Sbjct: 123 ANKTVALGSNVEF 135
>pdb|2IAT|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244l Mutant
Length = 312
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 29/169 (17%)
Query: 130 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 187
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 188 YCLDILEG-------KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED---YVVVCE 237
Y + E GQ+++ D + F F NG+A+ D Y ++
Sbjct: 142 YTRSMQEKFGSIYCFTTDGQMIQVDTA----------FQFPNGIAVRHMNDGRPYQLIVA 191
Query: 238 SWKCRKYW---LKGERKGKLETFAENLP----GAPDNINLAPDGTFWIA 279
+K W +KG K + + ++P G D ++ D +A
Sbjct: 192 ETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 240
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 155 VNGSKLRFAN-----DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPS 207
+ G K+R+A D V SD Y + ++Y + H Y LD++E PH +L+
Sbjct: 63 IGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLP 122
Query: 208 SNITTLVADGFYF 220
+N T + F
Sbjct: 123 ANKTVALGSNVEF 135
>pdb|2IAV|A Chain A, Crystal Structure Of Squid Ganglion Dfpase H287a Mutant
Length = 312
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 25/149 (16%)
Query: 130 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 187
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 188 YCLDILEG-------KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED---YVVVCE 237
Y + E GQ+++ D + F F NG+A+ D Y ++
Sbjct: 142 YTRSMQEKFGSIYCFTTDGQMIQVDTA----------FQFPNGIAVRHMNDGRPYQLIVA 191
Query: 238 SWKCRKYW---LKGERKGKLETFAENLPG 263
+K W +KG K + + ++PG
Sbjct: 192 ETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|1E1A|A Chain A, Crystal Structure Of Dfpase From Loligo Vulgaris
pdb|1PJX|A Chain A, 0.85 Angstrom Structure Of Squid Ganglion Dfpase
pdb|2GVV|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase) In
Complex With Dicyclopentylphosphoroamidate (Dcppa)
pdb|2GVW|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase)
Holoenzyme (Rt)
pdb|3BYC|A Chain A, Joint Neutron And X-Ray Structure Of Diisopropyl
Fluorophosphatase. Deuterium Occupancies Are 1-Q, Where
Q Is Occupancy Of H
pdb|3KGG|A Chain A, X-Ray Structure Of Perdeuterated Diisopropyl
Fluorophosphata (Dfpase): Perdeuteration Of Proteins For
Neutron Diffractio
pdb|3O4P|A Chain A, Dfpase At 0.85 Angstrom Resolution (H Atoms Included)
Length = 314
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 25/149 (16%)
Query: 130 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 187
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 84 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 143
Query: 188 YCLDILEG-------KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED---YVVVCE 237
Y + E GQ+++ D + F F NG+A+ D Y ++
Sbjct: 144 YTRSMQEKFGSIYCFTTDGQMIQVDTA----------FQFPNGIAVRHMNDGRPYQLIVA 193
Query: 238 SWKCRKYW---LKGERKGKLETFAENLPG 263
+K W +KG K + + ++PG
Sbjct: 194 ETPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|2IAO|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E37q Mutant
Length = 312
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 130 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 187
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 188 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED---YVVVCESWKCRKY 244
Y + E G + + + V F F NG+A+ D Y ++ +K
Sbjct: 142 YTRSMQE--KFGSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 245 W---LKGERKGKLETFAENLPG 263
W +KG K + + ++PG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAP|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E21q Mutant
Length = 312
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 130 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 187
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 188 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED---YVVVCESWKCRKY 244
Y + E G + + + V F F NG+A+ D Y ++ +K
Sbjct: 142 YTRSMQE--KFGSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 245 W---LKGERKGKLETFAENLPG 263
W +KG K + + ++PG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAX|A Chain A, Crystal Structure Of Squid Ganglion Dfpase D232s Mutant
Length = 312
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 130 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 187
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 188 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED---YVVVCESWKCRKY 244
Y + E G + + + V F F NG+A+ D Y ++ +K
Sbjct: 142 YTRSMQE--KFGSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 245 W---LKGERKGKLETFAENLPG 263
W +KG K + + ++PG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAQ|A Chain A, Crystal Structure Of Squid Ganglion Dfpase S271a Mutant
Length = 312
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Query: 130 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 187
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 188 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED---YVVVCESWKCRKY 244
Y + E G + + + V F F NG+A+ D Y ++ +K
Sbjct: 142 YTRSMQE--KFGSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 245 W---LKGERKGKLETFAENLPG 263
W +KG K + + ++PG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAS|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244f Mutant
Length = 312
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 15/162 (9%)
Query: 130 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 187
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 188 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED---YVVVCESWKCRKY 244
Y + E G + + + V F F NG+A+ D Y ++ +K
Sbjct: 142 YTRSMQE--KFGSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 245 W---LKGERKGKLETFAENLP----GAPDNINLAPDGTFWIA 279
W +KG K + + ++P G D ++ D +A
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 240
>pdb|2IAR|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244h Mutant
Length = 312
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 15/162 (9%)
Query: 130 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 187
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 188 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED---YVVVCESWKCRKY 244
Y + E G + + + V F F NG+A+ D Y ++ +K
Sbjct: 142 YTRSMQE--KFGSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 245 W---LKGERKGKLETFAENLP----GAPDNINLAPDGTFWIA 279
W +KG K + + ++P G D ++ D +A
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 240
>pdb|3DR2|A Chain A, Structural And Functional Analyses Of Xc5397 From
Xanthomonas Campestris: A Gluconolactonase Important In
Glucose Secondary Metabolic Pathways
pdb|3DR2|B Chain B, Structural And Functional Analyses Of Xc5397 From
Xanthomonas Campestris: A Gluconolactonase Important In
Glucose Secondary Metabolic Pathways
Length = 305
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 131 LIICDNAN-GLHKVSEDGVENFL-SYVNGSKLRFANDVVEASDGSLYFTVSS-SKYLPHE 187
L+ C++ + + DG + L G +L ND++ A DG+++FT P +
Sbjct: 99 LVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQ 158
Query: 188 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 238
C E H + + P + +AD NG+A S DE + V ++
Sbjct: 159 GCPADPE-LAHHSVYRLPPDGSPLQRMAD-LDHPNGLAFSPDEQTLYVSQT 207
>pdb|2IAU|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244y Mutant
Length = 312
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 15/162 (9%)
Query: 130 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 187
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 188 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED---YVVVCESWKCRKY 244
Y + E G + + + V F F NG+A+ D Y ++ +K
Sbjct: 142 YTRSMQE--KFGSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 245 W---LKGERKGKLETFAENLP----GAPDNINLAPDGTFWIA 279
W +KG K + + ++P G D ++ D +A
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 240
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 301 LAAYPKLFSQFITLGGGAHLIHVAEDG---TIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 357
+ +Y +LFS+ I +H+AE G +I + DP+ M FVTS + H++ +
Sbjct: 315 VKSYARLFSKSIE----TLRVHLAEKGDGAELIWDKDDPSA--MDFVTSAANLRMHIFSM 368
Query: 358 SLTSNF 363
++ S F
Sbjct: 369 NMKSRF 374
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 301 LAAYPKLFSQFITLGGGAHLIHVAEDG---TIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 357
+ +Y +LFS+ I +H+AE G +I + DP+ M FVTS + H++ +
Sbjct: 335 VKSYARLFSKSIE----TLRVHLAEKGDGAELIWDKDDPSA--MDFVTSAANLRMHIFSM 388
Query: 358 SLTSNF 363
++ S F
Sbjct: 389 NMKSRF 394
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 301 LAAYPKLFSQFITLGGGAHLIHVAEDG---TIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 357
+ +Y +LFS+ I +H+AE G +I + DP+ M FVTS + H++ +
Sbjct: 317 VKSYARLFSKSIE----TLRVHLAEKGDGAELIWDKDDPSA--MDFVTSAANLRMHIFSM 370
Query: 358 SLTSNF 363
++ S F
Sbjct: 371 NMKSRF 376
>pdb|2GVX|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase),
Mutant D229n N175D
Length = 314
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 25/149 (16%)
Query: 130 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 187
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 84 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 143
Query: 188 YCLDILEG-------KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED---YVVVCE 237
Y + E GQ+++ D + F F +G+A+ D Y ++
Sbjct: 144 YTRSMQEKFGSIYCFTTDGQMIQVDTA----------FQFPDGIAVRHMNDGRPYQLIVA 193
Query: 238 SWKCRKYW---LKGERKGKLETFAENLPG 263
+K W +KG K + + ++PG
Sbjct: 194 ETPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|2IAW|A Chain A, Crystal Structure Of Squid Ganglion Dfpase N175d Mutant
Length = 312
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 61/149 (40%), Gaps = 25/149 (16%)
Query: 130 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 187
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 188 YCLDILEG-------KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED---YVVVCE 237
Y + E GQ+++ D + F F +G+A+ D Y ++
Sbjct: 142 YTRSMQEKFGSIYCFTTDGQMIQVDTA----------FQFPDGIAVRHMNDGRPYQLIVA 191
Query: 238 SWKCRKYW---LKGERKGKLETFAENLPG 263
+K W +KG K + + ++PG
Sbjct: 192 ETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 165 DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 220
+ V SD Y V ++Y + H Y LD++E PH +L+ +N +T+V F
Sbjct: 73 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEF 130
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 165 DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 220
+ V SD Y V ++Y + H Y LD++E PH +L+ +N +T+V F
Sbjct: 72 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEF 129
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 165 DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 220
+ V SD Y V ++Y + H Y LD++E PH +L+ +N +T+V F
Sbjct: 81 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEF 138
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 165 DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 220
+ V SD Y V ++Y + H Y LD++E PH +L+ +N +T+V F
Sbjct: 80 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEF 137
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 165 DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 220
+ V SD Y V ++Y + H Y LD++E PH +L+ +N +T+V F
Sbjct: 73 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEF 130
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 165 DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 220
+ V SD Y V ++Y + H Y LD++E PH +L+ +N +T+V F
Sbjct: 73 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEF 130
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 155 VNGSKLRFAN-----DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPS 207
+ G KLR + V SD Y V +K+ + Y LD+LE PH +L+
Sbjct: 170 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLP 229
Query: 208 SNITTLVADGFYF 220
+N T ++ F
Sbjct: 230 ANQTAVLGSDVEF 242
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 155 VNGSKLRFAN-----DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPS 207
+ G KLR + V SD Y V +K+ + Y LD+LE PH +L+
Sbjct: 62 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLP 121
Query: 208 SNITTLVADGFYF 220
+N T ++ F
Sbjct: 122 ANQTAVLGSDVEF 134
>pdb|3IFT|A Chain A, Crystal Structure Of Glycine Cleavage System Protein H
From Mycobacterium Tuberculosis, Using X-Rays From The
Compact L Source
Length = 142
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 251 KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSS 294
GK+ +L G P +N P G W+ I++D+ + L S+
Sbjct: 83 SGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESA 126
>pdb|1O94|D Chain D, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|F Chain F, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|D Chain D, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|F Chain F, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O96|B Chain B, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|D Chain D, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|F Chain F, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|Z Chain Z, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O97|D Chain D, Structure Of Electron Transferring Flavoprotein From
Methylophilus Methylotrophus, Recognition Loop Removed
By Limited Proteolysis
Length = 320
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 46 FSPI----SPVLDEVPQPAVLSATQLQDFIKVGEGS 77
F P+ SPV+ V P+V S +Q +D+++VG G+
Sbjct: 160 FKPLEGAGSPVVSNVDAPSVQSRSQNKDYVEVGGGN 195
>pdb|3HGB|A Chain A, Crystal Structure Of Glycine Cleavage System Protein H
From Mycobacterium Tuberculosis
Length = 155
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 251 KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSS 294
GK+ +L G P +N P G W+ I++D+ + L S+
Sbjct: 96 SGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESA 139
>pdb|3CLU|D Chain D, Crystal Structure Of The R236k Mutant From Methylophilus
Methylotrophus Etf
Length = 321
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 46 FSPI----SPVLDEVPQPAVLSATQLQDFIKVGEGS 77
F P+ SPV+ V P+V S +Q +D+++VG G+
Sbjct: 161 FKPLEGAGSPVVSNVDAPSVQSRSQNKDYVEVGGGN 196
>pdb|3CLS|D Chain D, Crystal Structure Of The R236c Mutant Of Etf From
Methylophilus Methylotrophus
Length = 321
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 46 FSPI----SPVLDEVPQPAVLSATQLQDFIKVGEGS 77
F P+ SPV+ V P+V S +Q +D+++VG G+
Sbjct: 161 FKPLEGAGSPVVSNVDAPSVQSRSQNKDYVEVGGGN 196
>pdb|3CLR|D Chain D, Crystal Structure Of The R236a Etf Mutant From M.
Methylotrophus
Length = 321
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 46 FSPI----SPVLDEVPQPAVLSATQLQDFIKVGEGS 77
F P+ SPV+ V P+V S +Q +D+++VG G+
Sbjct: 161 FKPLEGAGSPVVSNVDAPSVQSRSQNKDYVEVGGGN 196
>pdb|3CLT|D Chain D, Crystal Structure Of The R236e Mutant Of Methylophilus
Methylotrophus Etf
Length = 321
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Query: 46 FSPI----SPVLDEVPQPAVLSATQLQDFIKVGEGS 77
F P+ SPV+ V P+V S +Q +D+++VG G+
Sbjct: 161 FKPLEGAGSPVVSNVDAPSVQSRSQNKDYVEVGGGN 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,769,577
Number of Sequences: 62578
Number of extensions: 514520
Number of successful extensions: 1113
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1083
Number of HSP's gapped (non-prelim): 59
length of query: 370
length of database: 14,973,337
effective HSP length: 100
effective length of query: 270
effective length of database: 8,715,537
effective search space: 2353194990
effective search space used: 2353194990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)