Query 017520
Match_columns 370
No_of_seqs 239 out of 2110
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 09:19:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 1.5E-47 3.3E-52 342.9 30.0 308 62-370 48-376 (376)
2 PF08450 SGL: SMP-30/Gluconola 100.0 4.3E-26 9.3E-31 203.9 26.6 227 81-359 2-245 (246)
3 COG3386 Gluconolactonase [Carb 99.9 1.1E-23 2.4E-28 191.1 30.4 232 85-362 31-278 (307)
4 COG4257 Vgb Streptogramin lyas 99.9 1.1E-20 2.4E-25 161.5 24.2 239 71-368 54-303 (353)
5 PLN02919 haloacid dehalogenase 99.8 6.8E-17 1.5E-21 169.7 31.3 242 77-370 566-888 (1057)
6 PF03088 Str_synth: Strictosid 99.8 8E-19 1.7E-23 128.1 8.1 86 164-249 1-89 (89)
7 COG4257 Vgb Streptogramin lyas 99.7 2.2E-14 4.8E-19 123.2 23.0 238 68-368 93-345 (353)
8 PLN02919 haloacid dehalogenase 99.6 4.9E-14 1.1E-18 148.3 25.3 187 78-283 623-879 (1057)
9 TIGR02604 Piru_Ver_Nterm putat 99.6 1.4E-13 3E-18 130.0 21.9 166 71-240 5-204 (367)
10 PF08450 SGL: SMP-30/Gluconola 99.5 2.1E-12 4.6E-17 115.4 17.8 142 77-238 84-245 (246)
11 KOG4499 Ca2+-binding protein R 99.5 2.8E-11 6E-16 102.0 22.4 222 89-358 26-273 (310)
12 PF10282 Lactonase: Lactonase, 99.5 6.7E-11 1.4E-15 111.0 27.9 249 65-370 25-322 (345)
13 PRK11028 6-phosphogluconolacto 99.4 2.5E-10 5.4E-15 106.5 29.3 235 79-369 35-303 (330)
14 PF10282 Lactonase: Lactonase, 99.3 1.1E-09 2.4E-14 102.8 25.3 196 66-282 75-312 (345)
15 COG2706 3-carboxymuconate cycl 99.3 7.8E-09 1.7E-13 92.6 27.0 242 78-370 39-321 (346)
16 COG3292 Predicted periplasmic 99.3 2E-10 4.4E-15 108.1 15.6 139 81-245 167-315 (671)
17 COG2706 3-carboxymuconate cycl 99.3 8.4E-09 1.8E-13 92.4 25.1 187 79-283 89-311 (346)
18 PRK11028 6-phosphogluconolacto 99.2 1.9E-08 4.1E-13 93.9 28.2 170 91-281 3-194 (330)
19 PF07995 GSDH: Glucose / Sorbo 99.2 5.7E-09 1.2E-13 97.1 23.2 158 78-240 1-202 (331)
20 COG3386 Gluconolactonase [Carb 99.2 2.6E-09 5.6E-14 97.5 19.1 145 76-239 108-276 (307)
21 TIGR03866 PQQ_ABC_repeats PQQ- 99.2 1.1E-07 2.3E-12 86.7 30.0 180 79-281 31-226 (300)
22 COG3292 Predicted periplasmic 99.2 1E-09 2.2E-14 103.5 16.6 203 122-360 169-395 (671)
23 KOG4659 Uncharacterized conser 99.1 4.3E-08 9.3E-13 99.8 27.1 190 79-306 407-694 (1899)
24 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 4.6E-07 1E-11 82.5 28.5 164 90-280 1-175 (300)
25 COG2133 Glucose/sorbosone dehy 99.1 1.6E-07 3.4E-12 87.7 24.8 167 69-240 58-260 (399)
26 PF03022 MRJP: Major royal jel 99.0 4.5E-08 9.8E-13 88.9 20.6 185 122-360 5-255 (287)
27 TIGR03606 non_repeat_PQQ dehyd 99.0 5.2E-08 1.1E-12 92.9 19.8 168 70-240 22-250 (454)
28 KOG4659 Uncharacterized conser 99.0 1.3E-07 2.7E-12 96.5 22.4 185 78-284 364-614 (1899)
29 COG3391 Uncharacterized conser 99.0 1.2E-06 2.6E-11 83.2 28.2 184 80-283 32-228 (381)
30 TIGR02604 Piru_Ver_Nterm putat 98.9 4.8E-08 1E-12 92.4 17.2 144 109-283 4-204 (367)
31 TIGR02658 TTQ_MADH_Hv methylam 98.9 3.6E-06 7.7E-11 78.1 27.3 244 90-369 13-329 (352)
32 COG3391 Uncharacterized conser 98.9 1.2E-06 2.6E-11 83.3 25.0 177 79-280 74-270 (381)
33 KOG0291 WD40-repeat-containing 98.8 8.2E-06 1.8E-10 79.7 25.5 186 76-285 348-544 (893)
34 cd00200 WD40 WD40 domain, foun 98.7 2.4E-05 5.2E-10 69.5 26.4 174 82-281 55-238 (289)
35 KOG1520 Predicted alkaloid syn 98.7 2.7E-06 5.9E-11 77.8 19.6 206 71-333 46-282 (376)
36 TIGR03300 assembly_YfgL outer 98.7 5.8E-05 1.3E-09 71.7 29.7 139 84-249 61-210 (377)
37 PF06977 SdiA-regulated: SdiA- 98.6 1.6E-05 3.5E-10 70.3 21.6 190 76-283 19-242 (248)
38 KOG1214 Nidogen and related ba 98.6 4.8E-06 1E-10 81.9 18.8 166 91-281 992-1176(1289)
39 cd00200 WD40 WD40 domain, foun 98.6 0.00016 3.4E-09 64.1 27.4 178 80-283 11-199 (289)
40 PF02239 Cytochrom_D1: Cytochr 98.6 7E-06 1.5E-10 77.5 18.9 152 81-249 39-204 (369)
41 PF02239 Cytochrom_D1: Cytochr 98.5 7.3E-05 1.6E-09 70.6 25.0 167 91-282 6-191 (369)
42 PRK04792 tolB translocation pr 98.5 9.2E-05 2E-09 72.0 26.1 199 83-339 222-438 (448)
43 PRK11138 outer membrane biogen 98.5 6.3E-05 1.4E-09 72.0 24.4 122 198-365 265-390 (394)
44 KOG1214 Nidogen and related ba 98.5 4.1E-06 8.9E-11 82.4 16.0 179 80-283 1026-1217(1289)
45 PRK04922 tolB translocation pr 98.5 0.0001 2.2E-09 71.4 25.8 199 83-339 208-424 (433)
46 KOG1446 Histone H3 (Lys4) meth 98.5 0.00049 1.1E-08 61.1 27.1 229 79-368 15-260 (311)
47 PF03022 MRJP: Major royal jel 98.5 1.1E-05 2.5E-10 73.3 17.1 182 82-282 4-255 (287)
48 TIGR03300 assembly_YfgL outer 98.5 0.00011 2.4E-09 69.8 24.2 123 197-365 249-375 (377)
49 PF13360 PQQ_2: PQQ-like domai 98.4 0.00018 4E-09 63.4 23.8 171 85-282 32-221 (238)
50 PRK11138 outer membrane biogen 98.4 6.7E-05 1.4E-09 71.8 22.1 214 89-368 120-351 (394)
51 PRK03629 tolB translocation pr 98.4 0.0003 6.4E-09 68.1 26.6 199 83-339 203-419 (429)
52 PRK02889 tolB translocation pr 98.4 0.00037 8E-09 67.4 26.5 199 83-339 200-416 (427)
53 PRK05137 tolB translocation pr 98.4 0.00058 1.3E-08 66.3 27.8 153 100-277 183-348 (435)
54 PRK00178 tolB translocation pr 98.4 0.00037 8E-09 67.5 26.0 200 82-339 202-419 (430)
55 KOG0318 WD40 repeat stress pro 98.3 0.00064 1.4E-08 64.3 25.0 181 76-283 318-508 (603)
56 KOG4499 Ca2+-binding protein R 98.3 2.6E-05 5.7E-10 66.4 14.4 137 83-237 113-273 (310)
57 PF06977 SdiA-regulated: SdiA- 98.3 0.00018 3.8E-09 63.7 20.1 193 118-367 23-247 (248)
58 PF05096 Glu_cyclase_2: Glutam 98.3 0.00023 5E-09 62.8 19.7 146 80-246 91-260 (264)
59 PRK05137 tolB translocation pr 98.3 0.00078 1.7E-08 65.4 25.5 168 83-276 206-390 (435)
60 PRK13684 Ycf48-like protein; P 98.3 0.0026 5.7E-08 59.3 28.0 177 80-283 47-235 (334)
61 PRK04043 tolB translocation pr 98.3 0.0013 2.8E-08 63.4 26.4 195 85-339 194-413 (419)
62 PRK03629 tolB translocation pr 98.3 0.0019 4.2E-08 62.5 27.8 154 100-278 180-346 (429)
63 TIGR02800 propeller_TolB tol-p 98.2 0.0013 2.8E-08 63.3 26.3 172 84-281 195-384 (417)
64 PRK04792 tolB translocation pr 98.2 0.0021 4.7E-08 62.5 27.4 132 122-277 222-364 (448)
65 PRK04043 tolB translocation pr 98.2 0.0033 7.1E-08 60.6 28.2 153 100-280 170-336 (419)
66 KOG0266 WD40 repeat-containing 98.2 0.0011 2.3E-08 64.8 25.2 177 82-281 163-353 (456)
67 PRK01742 tolB translocation pr 98.2 0.0013 2.9E-08 63.7 25.7 170 82-280 207-389 (429)
68 PF13360 PQQ_2: PQQ-like domai 98.2 0.0016 3.5E-08 57.3 24.4 205 98-369 2-229 (238)
69 KOG0279 G protein beta subunit 98.2 0.0025 5.5E-08 55.8 23.7 215 91-370 30-262 (315)
70 KOG0315 G-protein beta subunit 98.2 0.00025 5.5E-09 61.0 17.0 208 97-332 18-232 (311)
71 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.0016 3.5E-08 60.7 23.8 174 80-281 106-318 (352)
72 TIGR03606 non_repeat_PQQ dehyd 98.2 0.00024 5.2E-09 68.1 18.8 107 160-283 29-166 (454)
73 PRK04922 tolB translocation pr 98.1 0.0035 7.5E-08 60.8 27.1 131 122-276 208-349 (433)
74 PRK02889 tolB translocation pr 98.1 0.0049 1.1E-07 59.7 27.4 152 100-276 177-341 (427)
75 PF01731 Arylesterase: Arylest 98.1 2.3E-05 5E-10 57.0 8.4 81 164-247 1-84 (86)
76 KOG0291 WD40-repeat-containing 98.1 0.00084 1.8E-08 66.1 21.3 146 80-247 394-550 (893)
77 cd00216 PQQ_DH Dehydrogenases 98.1 0.0038 8.2E-08 61.5 26.2 250 89-364 110-419 (488)
78 PF07995 GSDH: Glucose / Sorbo 98.1 6.4E-05 1.4E-09 70.1 13.0 129 161-329 2-159 (331)
79 KOG0266 WD40 repeat-containing 98.1 0.0024 5.2E-08 62.3 24.3 151 76-249 201-366 (456)
80 PRK13684 Ycf48-like protein; P 98.1 0.0036 7.7E-08 58.5 24.4 221 83-365 94-327 (334)
81 KOG2106 Uncharacterized conser 98.1 0.0024 5.2E-08 60.3 22.5 176 81-283 249-428 (626)
82 KOG1446 Histone H3 (Lys4) meth 98.1 0.002 4.3E-08 57.3 20.8 155 73-249 95-264 (311)
83 TIGR02800 propeller_TolB tol-p 98.0 0.011 2.4E-07 56.8 27.4 156 100-280 171-339 (417)
84 TIGR03032 conserved hypothetic 98.0 0.0011 2.5E-08 59.5 18.5 188 78-284 48-263 (335)
85 KOG0275 Conserved WD40 repeat- 98.0 0.00027 5.9E-09 62.8 14.4 151 75-248 210-379 (508)
86 COG3204 Uncharacterized protei 98.0 0.0051 1.1E-07 54.6 21.9 190 76-283 83-304 (316)
87 KOG0318 WD40 repeat stress pro 97.9 0.016 3.5E-07 55.1 25.5 182 80-282 192-425 (603)
88 PRK01029 tolB translocation pr 97.9 0.014 3.1E-07 56.4 26.5 171 85-279 191-388 (428)
89 PRK00178 tolB translocation pr 97.9 0.015 3.3E-07 56.3 26.8 151 101-276 181-344 (430)
90 PF14870 PSII_BNR: Photosynthe 97.9 0.013 2.8E-07 53.5 23.8 179 80-283 18-207 (302)
91 PF05096 Glu_cyclase_2: Glutam 97.9 0.012 2.5E-07 52.2 22.4 190 122-369 49-260 (264)
92 PF07433 DUF1513: Protein of u 97.8 0.0063 1.4E-07 55.0 20.7 153 84-248 56-248 (305)
93 KOG2055 WD40 repeat protein [G 97.8 0.0013 2.9E-08 61.2 16.5 180 81-281 216-405 (514)
94 PTZ00421 coronin; Provisional 97.8 0.038 8.3E-07 54.3 27.7 146 80-248 77-246 (493)
95 KOG0315 G-protein beta subunit 97.8 0.018 3.8E-07 49.9 22.3 178 82-283 44-236 (311)
96 COG1520 FOG: WD40-like repeat 97.8 0.0075 1.6E-07 57.2 21.9 139 85-248 64-218 (370)
97 PRK02888 nitrous-oxide reducta 97.8 0.0055 1.2E-07 60.5 20.6 85 199-283 296-395 (635)
98 KOG0289 mRNA splicing factor [ 97.8 0.014 3E-07 54.3 21.6 185 122-366 308-501 (506)
99 KOG2106 Uncharacterized conser 97.8 0.0037 8E-08 59.0 18.1 177 78-282 329-511 (626)
100 KOG0286 G-protein beta subunit 97.7 0.027 5.9E-07 49.9 26.3 231 72-363 49-296 (343)
101 PRK01742 tolB translocation pr 97.7 0.025 5.5E-07 54.8 24.7 149 100-276 185-346 (429)
102 KOG0286 G-protein beta subunit 97.7 0.013 2.8E-07 51.8 19.7 168 83-276 150-329 (343)
103 KOG0294 WD40 repeat-containing 97.7 0.024 5.2E-07 50.7 21.2 175 81-283 46-229 (362)
104 KOG1539 WD repeat protein [Gen 97.7 0.0016 3.5E-08 64.8 15.4 178 80-283 450-638 (910)
105 KOG1274 WD40 repeat protein [G 97.6 0.03 6.4E-07 56.7 23.5 148 79-249 14-170 (933)
106 PTZ00421 coronin; Provisional 97.6 0.069 1.5E-06 52.5 26.3 117 114-249 73-200 (493)
107 COG3204 Uncharacterized protei 97.6 0.0066 1.4E-07 54.0 16.9 158 71-246 121-311 (316)
108 PLN00033 photosystem II stabil 97.6 0.049 1.1E-06 51.9 24.1 225 83-364 141-394 (398)
109 PF03088 Str_synth: Strictosid 97.6 0.00056 1.2E-08 50.2 8.3 61 83-144 2-85 (89)
110 KOG1273 WD40 repeat protein [G 97.5 0.032 6.9E-07 50.0 19.7 201 80-282 25-269 (405)
111 PLN00181 protein SPA1-RELATED; 97.5 0.17 3.7E-06 53.1 29.8 174 82-281 536-727 (793)
112 PF07433 DUF1513: Protein of u 97.5 0.07 1.5E-06 48.4 22.9 106 117-237 5-117 (305)
113 KOG1274 WD40 repeat protein [G 97.5 0.011 2.3E-07 59.8 18.3 166 91-279 68-249 (933)
114 KOG0279 G protein beta subunit 97.5 0.066 1.4E-06 47.2 23.2 184 75-283 60-253 (315)
115 COG4946 Uncharacterized protei 97.5 0.043 9.3E-07 51.8 20.7 78 199-280 382-460 (668)
116 PF14583 Pectate_lyase22: Olig 97.5 0.028 6E-07 52.6 19.6 152 85-239 42-209 (386)
117 PF14870 PSII_BNR: Photosynthe 97.5 0.085 1.8E-06 48.2 24.6 214 83-361 66-296 (302)
118 COG1520 FOG: WD40-like repeat 97.5 0.11 2.4E-06 49.3 24.8 106 88-211 110-221 (370)
119 TIGR03118 PEPCTERM_chp_1 conse 97.4 0.065 1.4E-06 48.2 20.7 124 222-369 141-278 (336)
120 cd00216 PQQ_DH Dehydrogenases 97.4 0.021 4.5E-07 56.3 19.9 187 84-283 222-458 (488)
121 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.054 1.2E-06 53.8 22.5 108 89-212 69-194 (527)
122 PTZ00420 coronin; Provisional 97.4 0.17 3.7E-06 50.5 26.0 117 115-249 73-199 (568)
123 COG4946 Uncharacterized protei 97.4 0.0071 1.5E-07 56.8 14.7 130 91-238 373-508 (668)
124 PF05787 DUF839: Bacterial pro 97.4 0.0046 9.9E-08 61.0 14.5 79 158-237 433-520 (524)
125 KOG2055 WD40 repeat protein [G 97.4 0.028 6.1E-07 52.7 18.4 222 84-362 263-505 (514)
126 KOG0272 U4/U6 small nuclear ri 97.4 0.019 4.1E-07 53.2 16.8 177 80-280 219-405 (459)
127 KOG0275 Conserved WD40 repeat- 97.3 0.0033 7E-08 56.2 11.2 108 119-249 309-425 (508)
128 PF13449 Phytase-like: Esteras 97.3 0.035 7.5E-07 51.7 18.5 158 78-239 19-234 (326)
129 COG2133 Glucose/sorbosone dehy 97.3 0.024 5.1E-07 53.5 17.1 63 220-283 315-387 (399)
130 PF02333 Phytase: Phytase; In 97.3 0.036 7.7E-07 52.0 18.1 142 88-249 66-239 (381)
131 PLN00181 protein SPA1-RELATED; 97.3 0.34 7.3E-06 51.0 29.7 146 81-249 486-650 (793)
132 KOG2139 WD40 repeat protein [G 97.2 0.14 3.1E-06 46.8 20.8 150 114-285 192-368 (445)
133 PF05787 DUF839: Bacterial pro 97.2 0.019 4.2E-07 56.7 17.0 123 158-281 347-521 (524)
134 KOG0263 Transcription initiati 97.2 0.017 3.8E-07 57.2 16.2 181 84-290 457-648 (707)
135 PF01436 NHL: NHL repeat; Int 97.2 0.0005 1.1E-08 38.7 3.3 25 79-103 2-27 (28)
136 PRK01029 tolB translocation pr 97.1 0.23 5E-06 48.1 23.1 78 198-275 210-293 (428)
137 KOG0278 Serine/threonine kinas 97.1 0.012 2.6E-07 51.0 12.4 172 81-280 103-285 (334)
138 KOG4649 PQQ (pyrrolo-quinoline 97.1 0.16 3.4E-06 44.6 21.1 142 80-249 14-167 (354)
139 KOG4649 PQQ (pyrrolo-quinoline 97.1 0.16 3.6E-06 44.5 20.2 136 91-249 65-219 (354)
140 KOG0278 Serine/threonine kinas 97.1 0.073 1.6E-06 46.3 16.6 133 88-245 154-294 (334)
141 COG3490 Uncharacterized protei 97.1 0.16 3.4E-06 45.2 18.7 161 166-343 119-317 (366)
142 PLN00033 photosystem II stabil 97.0 0.064 1.4E-06 51.1 17.4 142 84-245 244-397 (398)
143 PRK02888 nitrous-oxide reducta 97.0 0.038 8.2E-07 54.8 16.0 110 109-239 313-452 (635)
144 KOG0282 mRNA splicing factor [ 97.0 0.028 6E-07 52.9 14.2 176 81-280 261-450 (503)
145 COG3823 Glutamine cyclotransfe 97.0 0.018 3.8E-07 48.7 11.6 103 116-238 130-248 (262)
146 TIGR03032 conserved hypothetic 97.0 0.28 6.1E-06 44.5 20.7 121 92-237 20-169 (335)
147 PF14269 Arylsulfotran_2: Aryl 97.0 0.3 6.6E-06 44.7 22.1 38 162-216 145-182 (299)
148 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.9 0.51 1.1E-05 47.0 27.8 160 84-249 116-335 (527)
149 KOG0271 Notchless-like WD40 re 96.9 0.041 8.9E-07 50.5 14.4 183 71-280 240-469 (480)
150 KOG0285 Pleiotropic regulator 96.9 0.11 2.4E-06 47.4 16.8 150 74-248 147-308 (460)
151 KOG0646 WD40 repeat protein [G 96.8 0.06 1.3E-06 50.6 15.0 145 82-247 85-247 (476)
152 KOG0772 Uncharacterized conser 96.8 0.26 5.6E-06 47.2 19.0 189 81-289 170-392 (641)
153 KOG0265 U5 snRNP-specific prot 96.8 0.08 1.7E-06 47.1 14.8 143 82-246 51-203 (338)
154 PF01436 NHL: NHL repeat; Int 96.8 0.0026 5.7E-08 35.7 3.8 19 161-179 2-20 (28)
155 PTZ00420 coronin; Provisional 96.8 0.22 4.8E-06 49.7 19.8 154 80-249 127-295 (568)
156 PF14583 Pectate_lyase22: Olig 96.8 0.047 1E-06 51.1 14.0 142 166-337 41-188 (386)
157 KOG0263 Transcription initiati 96.7 0.15 3.2E-06 50.9 17.8 143 115-279 450-594 (707)
158 PF14517 Tachylectin: Tachylec 96.7 0.0047 1E-07 53.4 6.7 123 65-209 67-208 (229)
159 PF08662 eIF2A: Eukaryotic tra 96.7 0.091 2E-06 44.9 14.7 127 127-282 30-163 (194)
160 PF14517 Tachylectin: Tachylec 96.7 0.041 8.8E-07 47.7 12.3 160 65-246 21-205 (229)
161 KOG0316 Conserved WD40 repeat- 96.7 0.31 6.6E-06 42.2 16.9 172 82-283 21-205 (307)
162 KOG0293 WD40 repeat-containing 96.7 0.13 2.7E-06 47.9 15.6 147 114-283 222-376 (519)
163 PRK13616 lipoprotein LpqB; Pro 96.7 0.88 1.9E-05 45.9 23.4 220 91-361 322-560 (591)
164 PF08662 eIF2A: Eukaryotic tra 96.7 0.26 5.7E-06 42.1 17.1 127 87-238 29-163 (194)
165 KOG0643 Translation initiation 96.6 0.44 9.6E-06 42.0 21.9 181 83-283 15-211 (327)
166 COG3211 PhoX Predicted phospha 96.6 0.16 3.5E-06 49.4 16.4 123 158-282 414-574 (616)
167 PF06433 Me-amine-dh_H: Methyl 96.5 0.3 6.6E-06 45.0 17.2 108 129-250 3-129 (342)
168 KOG0289 mRNA splicing factor [ 96.5 0.47 1E-05 44.5 18.2 139 122-281 352-495 (506)
169 KOG0646 WD40 repeat protein [G 96.4 0.25 5.4E-06 46.6 16.1 202 119-367 84-304 (476)
170 COG3211 PhoX Predicted phospha 96.4 0.033 7.3E-07 53.9 10.6 74 159-238 498-573 (616)
171 KOG1407 WD40 repeat protein [F 96.3 0.33 7E-06 42.6 14.9 176 119-331 23-205 (313)
172 KOG0273 Beta-transducin family 96.3 1.1 2.4E-05 42.5 23.1 213 92-369 291-522 (524)
173 KOG0310 Conserved WD40 repeat- 96.2 0.99 2.1E-05 42.9 18.8 223 81-365 71-305 (487)
174 COG0823 TolB Periplasmic compo 96.2 1.1 2.3E-05 43.4 19.8 107 122-248 242-359 (425)
175 KOG0283 WD40 repeat-containing 96.1 0.19 4.2E-06 50.4 14.6 150 81-249 412-578 (712)
176 smart00135 LY Low-density lipo 96.1 0.022 4.7E-07 35.2 5.5 36 214-249 4-41 (43)
177 KOG2096 WD40 repeat protein [G 96.0 1.1 2.4E-05 40.5 20.9 150 80-246 88-257 (420)
178 KOG0772 Uncharacterized conser 96.0 1.3 2.8E-05 42.7 18.5 138 124-280 275-427 (641)
179 KOG2048 WD40 repeat protein [G 96.0 1.9 4.1E-05 42.8 23.4 179 79-283 70-267 (691)
180 KOG0293 WD40 repeat-containing 96.0 0.89 1.9E-05 42.5 17.0 152 122-299 274-432 (519)
181 KOG0282 mRNA splicing factor [ 95.9 0.15 3.3E-06 48.2 12.2 137 122-283 219-363 (503)
182 KOG1009 Chromatin assembly com 95.9 0.43 9.3E-06 44.3 14.9 227 117-362 66-365 (434)
183 PF13449 Phytase-like: Esteras 95.9 1.3 2.8E-05 41.2 18.6 63 220-283 86-168 (326)
184 KOG2139 WD40 repeat protein [G 95.8 0.94 2E-05 41.7 16.0 104 161-282 196-301 (445)
185 KOG0771 Prolactin regulatory e 95.7 0.22 4.7E-06 46.3 12.3 147 116-281 186-343 (398)
186 KOG0292 Vesicle coat complex C 95.7 2.9 6.2E-05 43.1 20.8 127 76-237 248-384 (1202)
187 KOG0316 Conserved WD40 repeat- 95.7 1.3 2.8E-05 38.5 16.2 126 97-249 79-215 (307)
188 KOG0288 WD40 repeat protein Ti 95.6 0.83 1.8E-05 42.6 15.5 125 97-240 320-453 (459)
189 KOG0285 Pleiotropic regulator 95.6 0.37 7.9E-06 44.2 12.9 142 84-249 283-441 (460)
190 KOG0283 WD40 repeat-containing 95.6 0.88 1.9E-05 45.9 16.6 144 122-289 374-530 (712)
191 COG3490 Uncharacterized protei 95.6 0.24 5.2E-06 44.1 11.3 115 225-359 120-244 (366)
192 KOG0271 Notchless-like WD40 re 95.5 0.17 3.6E-06 46.7 10.3 131 91-245 338-478 (480)
193 KOG0640 mRNA cleavage stimulat 95.4 0.094 2E-06 47.0 8.5 106 162-289 174-289 (430)
194 KOG0639 Transducin-like enhanc 95.4 0.78 1.7E-05 43.9 14.8 108 161-292 466-582 (705)
195 KOG2048 WD40 repeat protein [G 95.4 3.2 7E-05 41.2 20.8 147 81-249 28-186 (691)
196 KOG0284 Polyadenylation factor 95.4 0.21 4.5E-06 46.4 10.7 173 83-281 101-283 (464)
197 TIGR03074 PQQ_membr_DH membran 95.4 4.2 9.1E-05 42.3 22.4 58 89-147 194-280 (764)
198 KOG0319 WD40-repeat-containing 95.3 2.9 6.2E-05 42.0 19.0 173 84-280 25-210 (775)
199 KOG0973 Histone transcription 95.3 1.8 3.8E-05 45.1 17.9 148 115-283 68-240 (942)
200 KOG0268 Sof1-like rRNA process 95.2 1.1 2.3E-05 41.3 14.5 176 76-282 64-249 (433)
201 KOG2096 WD40 repeat protein [G 95.0 2.1 4.5E-05 38.8 15.4 62 219-282 332-393 (420)
202 KOG0639 Transducin-like enhanc 94.9 3.7 8.1E-05 39.5 18.4 138 89-249 431-583 (705)
203 TIGR03074 PQQ_membr_DH membran 94.9 3.4 7.4E-05 43.0 19.1 125 89-214 260-429 (764)
204 KOG0303 Actin-binding protein 94.8 1.3 2.8E-05 41.2 14.0 135 96-248 151-295 (472)
205 KOG0319 WD40-repeat-containing 94.8 1.5 3.3E-05 43.9 15.4 149 81-248 65-223 (775)
206 KOG0272 U4/U6 small nuclear ri 94.8 1.1 2.3E-05 42.0 13.5 151 75-245 300-457 (459)
207 PF06433 Me-amine-dh_H: Methyl 94.8 3.3 7.1E-05 38.3 16.7 82 199-282 17-115 (342)
208 KOG0299 U3 snoRNP-associated p 94.7 1.1 2.3E-05 42.4 13.4 186 80-293 144-358 (479)
209 KOG0296 Angio-associated migra 94.6 3.7 8E-05 37.9 22.1 143 83-249 69-222 (399)
210 PF08553 VID27: VID27 cytoplas 94.6 1.3 2.9E-05 45.7 15.2 153 76-246 478-646 (794)
211 PF02333 Phytase: Phytase; In 94.6 0.88 1.9E-05 42.9 12.9 98 81-179 158-279 (381)
212 KOG0310 Conserved WD40 repeat- 94.6 4 8.6E-05 39.0 16.9 169 89-283 122-301 (487)
213 KOG1036 Mitotic spindle checkp 94.6 2.1 4.6E-05 38.5 14.4 140 82-247 17-163 (323)
214 KOG0273 Beta-transducin family 94.6 4.5 9.7E-05 38.6 17.4 160 96-282 336-513 (524)
215 KOG2919 Guanine nucleotide-bin 94.5 1.6 3.4E-05 39.7 13.6 145 87-248 120-282 (406)
216 PRK13616 lipoprotein LpqB; Pro 94.5 6.1 0.00013 40.0 21.4 148 79-249 350-529 (591)
217 KOG1539 WD repeat protein [Gen 94.5 6.5 0.00014 40.2 20.3 182 117-335 449-637 (910)
218 PF00930 DPPIV_N: Dipeptidyl p 94.4 3.9 8.4E-05 38.5 17.3 82 197-283 258-348 (353)
219 PF07494 Reg_prop: Two compone 94.4 0.046 9.9E-07 29.4 2.4 18 80-97 6-23 (24)
220 KOG4378 Nuclear protein COP1 [ 94.3 1.7 3.6E-05 41.8 13.7 80 197-280 185-268 (673)
221 TIGR03118 PEPCTERM_chp_1 conse 94.1 4.4 9.5E-05 36.8 23.8 31 75-105 19-50 (336)
222 KOG0973 Histone transcription 94.1 2.2 4.8E-05 44.4 15.3 97 80-177 131-236 (942)
223 KOG0645 WD40 repeat protein [G 94.0 4.1 8.9E-05 36.2 19.7 115 116-248 14-136 (312)
224 COG0823 TolB Periplasmic compo 93.9 1.6 3.4E-05 42.2 13.4 102 199-337 218-325 (425)
225 PF05694 SBP56: 56kDa selenium 93.8 5.1 0.00011 38.3 16.1 61 221-281 314-393 (461)
226 KOG0640 mRNA cleavage stimulat 93.8 0.73 1.6E-05 41.5 10.0 146 82-246 176-334 (430)
227 PF07494 Reg_prop: Two compone 93.8 0.099 2.2E-06 28.0 3.0 21 159-179 3-23 (24)
228 KOG0292 Vesicle coat complex C 93.6 10 0.00022 39.4 20.5 148 79-251 10-169 (1202)
229 KOG0301 Phospholipase A2-activ 93.6 4.3 9.3E-05 40.6 15.7 141 80-245 103-246 (745)
230 PF05935 Arylsulfotrans: Aryls 93.5 3.1 6.8E-05 40.9 15.1 113 84-215 153-309 (477)
231 KOG0650 WD40 repeat nucleolar 93.5 8.5 0.00018 38.0 18.2 94 197-293 544-639 (733)
232 KOG0296 Angio-associated migra 93.5 6.3 0.00014 36.4 21.5 119 108-248 56-179 (399)
233 PF01731 Arylesterase: Arylest 93.4 0.27 5.8E-06 35.8 5.6 64 80-144 7-82 (86)
234 KOG0268 Sof1-like rRNA process 93.3 0.75 1.6E-05 42.2 9.4 141 81-247 112-259 (433)
235 KOG1272 WD40-repeat-containing 93.3 1.7 3.7E-05 41.3 11.9 58 221-282 296-354 (545)
236 KOG2110 Uncharacterized conser 93.1 4.8 0.00011 37.2 14.3 133 199-370 106-248 (391)
237 PF00058 Ldl_recept_b: Low-den 93.0 0.49 1.1E-05 29.2 5.7 40 172-228 1-42 (42)
238 PF05935 Arylsulfotrans: Aryls 92.8 7.1 0.00015 38.4 16.4 152 90-248 114-302 (477)
239 KOG0301 Phospholipase A2-activ 92.7 11 0.00025 37.7 17.0 164 89-283 71-240 (745)
240 KOG1407 WD40 repeat protein [F 92.6 7.1 0.00015 34.6 20.9 177 80-281 66-250 (313)
241 TIGR02276 beta_rpt_yvtn 40-res 92.5 0.66 1.4E-05 28.2 5.8 40 171-227 2-42 (42)
242 KOG0643 Translation initiation 92.4 7.5 0.00016 34.5 19.7 109 118-248 11-129 (327)
243 KOG0306 WD40-repeat-containing 92.3 12 0.00026 38.1 16.7 179 79-285 374-573 (888)
244 COG3823 Glutamine cyclotransfe 92.3 6.7 0.00015 33.6 16.7 136 197-369 109-258 (262)
245 KOG0265 U5 snRNP-specific prot 92.1 8.9 0.00019 34.6 18.3 51 198-248 195-247 (338)
246 KOG0299 U3 snoRNP-associated p 92.0 12 0.00025 35.7 18.7 142 82-247 206-356 (479)
247 KOG4441 Proteins containing BT 91.9 12 0.00026 37.7 17.0 142 89-249 332-501 (571)
248 KOG0281 Beta-TrCP (transducin 91.9 0.63 1.4E-05 42.5 7.1 91 197-293 338-430 (499)
249 KOG1538 Uncharacterized conser 91.6 3.8 8.3E-05 40.9 12.4 55 119-179 15-72 (1081)
250 KOG0284 Polyadenylation factor 91.6 1.5 3.2E-05 41.0 9.1 151 162-338 98-254 (464)
251 KOG2321 WD40 repeat protein [G 91.4 13 0.00028 36.6 15.5 112 82-212 137-263 (703)
252 PF10647 Gmad1: Lipoprotein Lp 91.1 11 0.00023 33.7 21.7 163 98-283 1-186 (253)
253 KOG0306 WD40-repeat-containing 90.9 20 0.00044 36.5 19.1 137 89-244 424-577 (888)
254 KOG3881 Uncharacterized conser 90.9 14 0.0003 34.5 16.3 83 197-282 224-310 (412)
255 KOG1273 WD40 repeat protein [G 90.8 12 0.00026 34.1 13.8 70 163-249 26-97 (405)
256 KOG2110 Uncharacterized conser 90.7 4.7 0.0001 37.3 11.4 79 97-179 151-237 (391)
257 KOG0650 WD40 repeat nucleolar 90.7 19 0.0004 35.8 15.8 68 213-283 516-588 (733)
258 KOG4328 WD40 protein [Function 90.6 16 0.00035 34.9 16.8 28 219-246 370-398 (498)
259 PF02897 Peptidase_S9_N: Proly 90.6 17 0.00036 34.9 21.6 149 122-282 128-296 (414)
260 KOG2321 WD40 repeat protein [G 90.6 2.5 5.5E-05 41.3 10.0 143 84-246 181-342 (703)
261 KOG3881 Uncharacterized conser 89.9 3.8 8.3E-05 38.1 10.2 85 92-179 219-309 (412)
262 KOG0308 Conserved WD40 repeat- 89.9 18 0.00039 36.2 15.2 179 80-284 119-320 (735)
263 KOG0313 Microtubule binding pr 89.7 17 0.00038 33.9 14.6 151 76-249 191-378 (423)
264 COG4247 Phy 3-phytase (myo-ino 89.6 13 0.00028 33.0 12.7 81 200-282 127-225 (364)
265 PHA02713 hypothetical protein; 89.1 24 0.00052 35.5 16.4 152 89-248 303-489 (557)
266 KOG3621 WD40 repeat-containing 89.0 28 0.0006 35.2 16.2 91 89-180 45-145 (726)
267 COG5276 Uncharacterized conser 88.9 18 0.00038 32.8 21.4 139 88-250 95-244 (370)
268 KOG1963 WD40 repeat protein [G 88.8 14 0.00031 37.8 14.2 144 82-249 209-377 (792)
269 KOG2919 Guanine nucleotide-bin 88.6 9.7 0.00021 34.8 11.5 148 78-249 158-329 (406)
270 smart00135 LY Low-density lipo 88.5 1.3 2.8E-05 26.9 4.6 31 77-107 7-40 (43)
271 KOG1408 WD40 repeat protein [F 88.5 20 0.00043 36.4 14.5 70 162-248 598-672 (1080)
272 PHA02713 hypothetical protein; 88.4 30 0.00065 34.8 21.6 98 100-215 273-383 (557)
273 KOG0295 WD40 repeat-containing 88.3 22 0.00047 33.1 13.7 146 80-248 195-365 (406)
274 KOG0308 Conserved WD40 repeat- 87.9 13 0.00027 37.2 12.7 143 80-246 173-326 (735)
275 PF05694 SBP56: 56kDa selenium 87.4 12 0.00025 36.0 11.9 121 100-238 223-393 (461)
276 KOG0771 Prolactin regulatory e 87.4 26 0.00056 33.0 14.8 55 122-179 149-205 (398)
277 KOG1188 WD40 repeat protein [G 87.3 18 0.00039 33.3 12.5 136 198-369 49-195 (376)
278 KOG1034 Transcriptional repres 87.1 24 0.00053 32.4 16.5 82 89-173 103-194 (385)
279 PF00930 DPPIV_N: Dipeptidyl p 87.1 27 0.00058 32.8 22.7 131 200-369 159-314 (353)
280 KOG1445 Tumor-specific antigen 86.4 11 0.00024 37.6 11.3 138 84-246 633-797 (1012)
281 PF10647 Gmad1: Lipoprotein Lp 85.9 25 0.00054 31.3 20.1 151 80-249 25-199 (253)
282 KOG1524 WD40 repeat-containing 85.9 31 0.00066 33.9 13.8 84 91-179 77-165 (737)
283 smart00284 OLF Olfactomedin-li 85.6 26 0.00056 31.2 18.0 148 78-246 74-251 (255)
284 KOG4547 WD40 repeat-containing 85.6 39 0.00084 33.3 18.5 105 92-221 73-186 (541)
285 KOG0294 WD40 repeat-containing 85.6 29 0.00062 31.7 16.0 82 91-177 99-186 (362)
286 TIGR02276 beta_rpt_yvtn 40-res 85.6 4.1 8.9E-05 24.5 5.7 37 89-126 3-42 (42)
287 KOG0276 Vesicle coat complex C 85.3 43 0.00093 33.6 17.0 26 80-105 353-378 (794)
288 KOG4378 Nuclear protein COP1 [ 85.3 30 0.00065 33.6 13.3 133 97-250 141-283 (673)
289 KOG1036 Mitotic spindle checkp 84.0 33 0.00071 31.1 16.9 135 122-286 18-158 (323)
290 smart00564 PQQ beta-propeller 83.1 2.5 5.4E-05 24.0 3.7 23 88-110 5-29 (33)
291 PF11763 DIPSY: Cell-wall adhe 83.0 19 0.00041 27.5 8.9 91 79-179 4-100 (123)
292 KOG1215 Low-density lipoprotei 82.9 69 0.0015 34.3 16.9 178 80-282 438-629 (877)
293 KOG0647 mRNA export protein (c 82.7 38 0.00081 30.8 13.3 61 218-281 251-312 (347)
294 PF06739 SBBP: Beta-propeller 82.3 1.2 2.7E-05 26.8 2.1 18 162-179 14-31 (38)
295 KOG0305 Anaphase promoting com 82.1 54 0.0012 32.2 16.0 176 79-282 218-407 (484)
296 KOG0305 Anaphase promoting com 81.9 55 0.0012 32.1 14.3 146 115-284 300-454 (484)
297 KOG0302 Ribosome Assembly prot 81.8 35 0.00077 31.9 12.0 117 117-252 212-337 (440)
298 KOG3914 WD repeat protein WDR4 81.7 13 0.00028 34.8 9.3 108 118-247 64-181 (390)
299 PF06739 SBBP: Beta-propeller 81.3 1.3 2.8E-05 26.7 1.9 17 80-96 14-30 (38)
300 KOG1963 WD40 repeat protein [G 80.6 75 0.0016 32.9 19.8 145 81-245 163-320 (792)
301 KOG1215 Low-density lipoprotei 80.4 60 0.0013 34.7 15.4 150 72-245 474-637 (877)
302 PF08553 VID27: VID27 cytoplas 80.3 4 8.6E-05 42.4 6.1 64 81-144 580-645 (794)
303 PHA02790 Kelch-like protein; P 80.1 64 0.0014 31.8 18.7 62 170-248 317-385 (480)
304 KOG0649 WD40 repeat protein [G 79.5 43 0.00094 29.5 15.6 66 80-147 116-188 (325)
305 KOG0321 WD40 repeat-containing 78.8 76 0.0017 31.9 16.2 55 89-144 64-128 (720)
306 KOG0649 WD40 repeat protein [G 77.6 50 0.0011 29.2 12.5 106 118-247 116-235 (325)
307 KOG0295 WD40 repeat-containing 77.0 64 0.0014 30.1 16.8 137 122-283 198-355 (406)
308 KOG0288 WD40 repeat protein Ti 76.9 69 0.0015 30.4 17.3 174 76-279 217-404 (459)
309 KOG1517 Guanine nucleotide bin 76.8 1.1E+02 0.0025 32.9 20.0 223 91-368 1125-1379(1387)
310 PF01011 PQQ: PQQ enzyme repea 76.7 7.3 0.00016 23.2 4.3 24 90-113 1-26 (38)
311 PF00058 Ldl_recept_b: Low-den 76.6 12 0.00026 22.9 5.3 37 90-127 1-42 (42)
312 KOG0645 WD40 repeat protein [G 76.5 57 0.0012 29.2 22.1 148 79-246 15-179 (312)
313 KOG2395 Protein involved in va 76.3 83 0.0018 31.1 13.4 140 88-246 343-499 (644)
314 KOG0281 Beta-TrCP (transducin 76.3 16 0.00034 33.8 7.9 162 82-280 201-376 (499)
315 KOG2394 WD40 protein DMR-N9 [G 76.3 4.4 9.5E-05 39.4 4.7 69 162-247 292-362 (636)
316 KOG0313 Microtubule binding pr 76.0 70 0.0015 30.0 14.9 100 76-177 258-363 (423)
317 KOG0641 WD40 repeat protein [G 75.7 53 0.0012 28.5 23.3 58 79-137 33-109 (350)
318 PF13570 PQQ_3: PQQ-like domai 74.7 3.8 8.2E-05 24.7 2.7 22 83-105 16-37 (40)
319 KOG4547 WD40 repeat-containing 74.5 72 0.0016 31.5 12.4 104 197-339 78-186 (541)
320 PHA02790 Kelch-like protein; P 74.4 92 0.002 30.7 19.8 138 89-248 271-424 (480)
321 PF14339 DUF4394: Domain of un 74.2 34 0.00073 30.1 9.3 74 122-213 31-109 (236)
322 COG5276 Uncharacterized conser 73.3 74 0.0016 29.0 17.0 104 122-250 91-202 (370)
323 KOG1009 Chromatin assembly com 73.3 54 0.0012 31.0 10.7 57 219-278 124-181 (434)
324 COG4447 Uncharacterized protei 73.3 72 0.0015 28.9 15.9 47 199-245 148-197 (339)
325 PHA03098 kelch-like protein; P 73.2 1E+02 0.0022 30.6 20.2 142 89-249 294-466 (534)
326 KOG4441 Proteins containing BT 72.8 1.1E+02 0.0024 30.9 16.6 132 100-249 302-454 (571)
327 KOG0269 WD40 repeat-containing 72.6 32 0.0007 35.2 9.8 140 91-253 102-256 (839)
328 PRK14131 N-acetylneuraminic ac 72.0 91 0.002 29.5 15.6 17 199-215 189-205 (376)
329 PF00400 WD40: WD domain, G-be 71.7 17 0.00038 21.1 5.6 29 217-245 10-39 (39)
330 KOG1538 Uncharacterized conser 71.2 1.3E+02 0.0027 30.8 21.5 62 79-141 13-77 (1081)
331 COG4590 ABC-type uncharacteriz 71.2 40 0.00087 32.5 9.6 138 222-369 224-385 (733)
332 KOG2111 Uncharacterized conser 70.6 87 0.0019 28.7 17.5 145 81-249 97-258 (346)
333 KOG0276 Vesicle coat complex C 70.5 1.2E+02 0.0027 30.5 17.2 92 85-179 63-160 (794)
334 KOG2394 WD40 protein DMR-N9 [G 69.5 87 0.0019 30.9 11.5 57 219-279 291-349 (636)
335 COG4246 Uncharacterized protei 68.8 70 0.0015 28.6 9.9 61 83-144 88-161 (340)
336 KOG2315 Predicted translation 68.6 1.3E+02 0.0028 29.8 14.8 102 161-284 271-377 (566)
337 KOG2315 Predicted translation 68.6 1.3E+02 0.0028 29.8 16.3 75 199-280 251-329 (566)
338 PF02191 OLF: Olfactomedin-lik 68.1 88 0.0019 27.8 18.2 148 78-246 69-246 (250)
339 PRK10115 protease 2; Provision 66.8 1.7E+02 0.0036 30.5 16.6 48 199-249 153-209 (686)
340 PF15416 DUF4623: Domain of un 66.3 91 0.002 28.9 10.4 58 226-283 139-203 (442)
341 PF14269 Arylsulfotran_2: Aryl 62.9 1.2E+02 0.0027 27.7 14.9 35 79-113 144-181 (299)
342 KOG0307 Vesicle coat complex C 62.5 70 0.0015 34.2 10.2 138 90-246 81-239 (1049)
343 PHA03098 kelch-like protein; P 62.5 1.7E+02 0.0037 29.1 20.2 104 128-249 294-416 (534)
344 KOG1445 Tumor-specific antigen 62.3 73 0.0016 32.1 9.7 119 114-247 718-844 (1012)
345 KOG0274 Cdc4 and related F-box 62.3 1.8E+02 0.0038 29.2 22.7 147 75-249 246-402 (537)
346 COG4247 Phy 3-phytase (myo-ino 61.4 1.2E+02 0.0026 27.1 23.8 29 220-248 206-235 (364)
347 PF04053 Coatomer_WDAD: Coatom 60.2 1.7E+02 0.0038 28.5 19.5 136 79-247 33-175 (443)
348 PF02897 Peptidase_S9_N: Proly 59.7 1.6E+02 0.0035 28.0 23.2 73 163-251 229-313 (414)
349 PF11725 AvrE: Pathogenicity f 59.0 73 0.0016 35.9 9.9 29 217-247 487-516 (1774)
350 KOG1272 WD40-repeat-containing 57.9 51 0.0011 31.8 7.6 60 161-240 294-354 (545)
351 PF11768 DUF3312: Protein of u 57.8 56 0.0012 32.4 8.1 67 162-247 261-329 (545)
352 KOG4227 WD40 repeat protein [G 57.7 1.7E+02 0.0038 27.7 11.1 62 82-144 109-176 (609)
353 KOG0303 Actin-binding protein 57.5 1.8E+02 0.0038 27.7 17.9 82 197-281 152-235 (472)
354 TIGR03548 mutarot_permut cycli 56.5 1.6E+02 0.0035 27.0 17.7 67 170-249 122-196 (323)
355 PF09826 Beta_propel: Beta pro 55.7 2.3E+02 0.0049 28.4 13.9 102 241-369 250-354 (521)
356 KOG2395 Protein involved in va 53.9 33 0.00072 33.7 5.8 65 80-144 432-498 (644)
357 KOG0641 WD40 repeat protein [G 51.6 1.6E+02 0.0036 25.6 21.2 56 221-280 234-291 (350)
358 KOG2111 Uncharacterized conser 50.8 2E+02 0.0044 26.4 10.7 59 116-179 181-244 (346)
359 KOG4227 WD40 repeat protein [G 49.8 2.3E+02 0.0051 26.8 13.4 114 117-248 57-180 (609)
360 KOG0264 Nucleosome remodeling 49.5 2.5E+02 0.0053 27.0 16.4 138 89-247 190-347 (422)
361 KOG3914 WD repeat protein WDR4 49.3 1.2E+02 0.0026 28.6 8.5 109 79-210 108-226 (390)
362 TIGR03803 Gloeo_Verruco Gloeo_ 49.1 53 0.0012 19.2 4.4 16 314-329 13-28 (34)
363 KOG0269 WD40 repeat-containing 47.8 3.4E+02 0.0075 28.2 12.3 103 197-302 108-218 (839)
364 KOG0267 Microtubule severing p 47.4 1.4E+02 0.003 30.7 9.1 94 79-179 71-172 (825)
365 COG1770 PtrB Protease II [Amin 47.4 3.3E+02 0.0072 27.9 16.5 75 159-249 127-210 (682)
366 KOG1408 WD40 repeat protein [F 46.0 2.2E+02 0.0047 29.5 10.1 107 122-247 601-713 (1080)
367 PF14298 DUF4374: Domain of un 45.6 2.5E+02 0.0054 27.2 10.3 29 170-212 400-429 (435)
368 PF11768 DUF3312: Protein of u 44.5 1.5E+02 0.0032 29.6 8.7 64 80-144 261-327 (545)
369 KOG1310 WD40 repeat protein [G 43.8 3.5E+02 0.0075 27.1 16.9 112 116-249 50-180 (758)
370 KOG1898 Splicing factor 3b, su 41.7 5E+02 0.011 28.3 17.2 106 225-368 940-1048(1205)
371 KOG1034 Transcriptional repres 41.0 1.1E+02 0.0023 28.4 6.6 53 194-246 324-382 (385)
372 KOG1063 RNA polymerase II elon 40.4 97 0.0021 31.5 6.8 81 163-255 528-610 (764)
373 PF14339 DUF4394: Domain of un 40.0 1.8E+02 0.0038 25.7 7.7 70 162-249 28-105 (236)
374 KOG0918 Selenium-binding prote 39.9 83 0.0018 29.9 5.9 28 222-249 315-344 (476)
375 PF13964 Kelch_6: Kelch motif 39.4 60 0.0013 20.3 3.8 34 170-214 10-43 (50)
376 PLN02193 nitrile-specifier pro 39.2 3.8E+02 0.0083 26.2 19.8 49 199-249 244-304 (470)
377 TIGR02608 delta_60_rpt delta-6 39.1 85 0.0018 20.7 4.4 43 266-335 4-46 (55)
378 PF09910 DUF2139: Uncharacteri 39.0 3.1E+02 0.0068 25.2 18.8 208 84-358 5-260 (339)
379 PRK13614 lipoprotein LpqB; Pro 38.6 4.4E+02 0.0095 26.7 16.0 94 85-179 389-504 (573)
380 KOG1230 Protein containing rep 37.3 3.9E+02 0.0085 25.8 11.4 38 241-279 209-248 (521)
381 KOG1188 WD40 repeat protein [G 36.7 3.6E+02 0.0077 25.2 13.5 178 90-285 41-236 (376)
382 KOG0647 mRNA export protein (c 36.2 3.5E+02 0.0075 24.9 16.5 107 117-245 28-142 (347)
383 KOG4328 WD40 protein [Function 36.2 4.1E+02 0.009 25.8 14.6 139 118-279 324-481 (498)
384 PF15492 Nbas_N: Neuroblastoma 35.9 3.3E+02 0.0072 24.6 15.8 137 123-278 3-163 (282)
385 KOG1897 Damage-specific DNA bi 35.7 6E+02 0.013 27.5 13.2 148 87-257 785-954 (1096)
386 PF03178 CPSF_A: CPSF A subuni 35.5 3.5E+02 0.0076 24.7 13.3 80 199-283 62-149 (321)
387 KOG1517 Guanine nucleotide bin 35.0 6.4E+02 0.014 27.7 20.1 63 81-144 1067-1138(1387)
388 PLN02153 epithiospecifier prot 34.7 3.7E+02 0.0081 24.8 21.0 119 89-215 32-175 (341)
389 KOG1379 Serine/threonine prote 34.7 1.9E+02 0.0042 26.6 7.3 71 128-215 180-252 (330)
390 KOG1310 WD40 repeat protein [G 34.4 2.3E+02 0.005 28.3 8.1 71 161-248 51-126 (758)
391 PF12768 Rax2: Cortical protei 32.8 3.4E+02 0.0073 24.7 8.7 93 138-245 16-121 (281)
392 PTZ00459 mucin-associated surf 32.6 28 0.0006 31.8 1.8 21 23-43 1-21 (291)
393 PF15390 DUF4613: Domain of un 31.2 2.3E+02 0.0049 28.6 7.6 67 215-281 335-403 (671)
394 KOG0270 WD40 repeat-containing 31.1 4.9E+02 0.011 25.1 14.3 125 91-240 258-395 (463)
395 PF05567 Neisseria_PilC: Neiss 31.1 91 0.002 29.1 5.0 52 198-249 180-241 (335)
396 PF08309 LVIVD: LVIVD repeat; 30.5 1E+02 0.0023 18.9 3.6 22 122-144 6-27 (42)
397 PF12894 Apc4_WD40: Anaphase-p 30.0 1.5E+02 0.0032 18.7 4.3 27 222-248 15-42 (47)
398 KOG1524 WD40 repeat-containing 29.0 6E+02 0.013 25.4 18.8 26 221-246 259-286 (737)
399 KOG2314 Translation initiation 28.9 4.5E+02 0.0098 26.3 9.1 61 219-282 493-557 (698)
400 PF07676 PD40: WD40-like Beta 28.6 1.1E+02 0.0024 17.7 3.5 17 222-238 12-28 (39)
401 PLN02153 epithiospecifier prot 28.6 4.7E+02 0.01 24.1 18.2 17 199-215 101-117 (341)
402 KOG1900 Nuclear pore complex, 27.7 5.5E+02 0.012 28.6 10.3 28 222-249 246-274 (1311)
403 smart00706 TECPR Beta propelle 27.3 93 0.002 17.8 2.9 25 80-104 9-33 (35)
404 KOG0642 Cell-cycle nuclear pro 27.2 6.3E+02 0.014 25.2 9.8 189 83-293 349-563 (577)
405 KOG0322 G-protein beta subunit 26.7 1.3E+02 0.0029 27.0 4.8 55 80-135 253-311 (323)
406 TIGR03547 muta_rot_YjhT mutatr 25.8 5.3E+02 0.011 23.8 14.2 17 199-215 168-184 (346)
407 KOG1230 Protein containing rep 25.7 6.2E+02 0.013 24.5 11.4 137 90-237 86-250 (521)
408 TIGR03548 mutarot_permut cycli 25.7 5.2E+02 0.011 23.6 12.6 50 199-249 88-149 (323)
409 PTZ00486 apyrase Superfamily; 24.8 3.9E+02 0.0085 25.1 7.7 43 318-360 135-182 (352)
410 TIGR02171 Fb_sc_TIGR02171 Fibr 24.7 6.2E+02 0.013 27.2 9.8 57 199-255 329-393 (912)
411 PHA03164 hypothetical protein; 24.7 52 0.0011 23.0 1.6 8 14-21 53-60 (88)
412 KOG0974 WD-repeat protein WDR6 24.5 9.1E+02 0.02 26.1 15.7 68 166-249 138-207 (967)
413 KOG3545 Olfactomedin and relat 24.2 5.1E+02 0.011 23.0 10.0 20 128-147 77-98 (249)
414 KOG3567 Peptidylglycine alpha- 23.9 1.3E+02 0.0029 29.1 4.6 23 158-180 464-486 (501)
415 PLN03160 uncharacterized prote 23.5 48 0.001 28.9 1.6 12 15-26 32-43 (219)
416 COG4222 Uncharacterized protei 23.4 6.6E+02 0.014 24.1 10.3 17 221-237 202-218 (391)
417 KOG2114 Vacuolar assembly/sort 23.3 9.2E+02 0.02 25.7 20.4 53 197-249 145-203 (933)
418 PF05567 Neisseria_PilC: Neiss 22.9 1.7E+02 0.0037 27.3 5.2 52 139-208 182-240 (335)
419 PF04762 IKI3: IKI3 family; I 21.9 1E+03 0.023 25.8 19.8 57 89-146 87-150 (928)
420 KOG0274 Cdc4 and related F-box 21.6 8.3E+02 0.018 24.5 20.9 174 89-292 218-401 (537)
421 PF02237 BPL_C: Biotin protein 21.5 1.6E+02 0.0034 18.5 3.3 24 86-109 22-45 (48)
422 KOG3621 WD40 repeat-containing 20.7 3E+02 0.0064 28.3 6.4 26 80-105 126-152 (726)
423 PF12768 Rax2: Cortical protei 20.6 6.4E+02 0.014 22.9 9.4 51 318-368 64-121 (281)
424 PF14977 FAM194: FAM194 protei 20.5 5.6E+02 0.012 22.1 10.9 18 266-283 69-86 (208)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=1.5e-47 Score=342.89 Aligned_cols=308 Identities=31% Similarity=0.540 Sum_probs=263.1
Q ss_pred cccccccCceEecCCCcCCCcceEEc-CCCcEEEEecCCeEEEEeC--C----e-----EEEEEecCCCceeceEEcCCC
Q 017520 62 LSATQLQDFIKVGEGSVNHPEDASMD-KNGVIYTATRDGWIKRLQD--G----T-----WVNWKFIDSQTLVGLTSTKEG 129 (370)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~~P~~i~~d-~~G~l~v~~~~g~I~~~~~--g----~-----~~~~~~~~~~p~~gl~~d~~G 129 (370)
.+++.+...+.+..+....|+.+.+. .+--.|.|...|+|-+.+. . . .....+.||||+ ||+++..|
T Consensus 48 ~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPL-Gl~f~~~g 126 (376)
T KOG1520|consen 48 IPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPL-GIRFDKKG 126 (376)
T ss_pred ccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcc-eEEeccCC
Confidence 45555656666655555544444443 2223777877887777761 1 0 111234579999 99999888
Q ss_pred -cEEEEeCCCceEEEcCCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeC
Q 017520 130 -HLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP 206 (370)
Q Consensus 130 -~L~v~~~~~gi~~~~~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 206 (370)
+|||||.+.|++.+++.| .+.+.+...|.++.+.|++.++++|.+||+|+|++|+.++++..+++++.+|++++||+
T Consensus 127 gdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~ 206 (376)
T KOG1520|consen 127 GDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDP 206 (376)
T ss_pred CeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecC
Confidence 899999999999999554 66677778899999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCc
Q 017520 207 SSNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLD 284 (370)
Q Consensus 207 ~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~ 284 (370)
.++..+++.+++.+|||+++++|+.+++++|+.. |.|||+++++.++.+.|++++||+||||..+++|++||+....+
T Consensus 207 ~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~ 286 (376)
T KOG1520|consen 207 STKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKR 286 (376)
T ss_pred cccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEeccc
Confidence 9999999999999999999999999999999987 99999999999999999988999999999999999999999999
Q ss_pred hhHHHhhhcchhHHHHHHhCCcccccc----ccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCC
Q 017520 285 ARRMKILNSSKLIKHVLAAYPKLFSQF----ITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLT 360 (370)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~ 360 (370)
+.+++++..+|++|+++.++|...+.. ....+|..|...|.+|+++++|+|++|.....++.+.|.+|+||+||+.
T Consensus 287 ~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~LyiGS~~ 366 (376)
T KOG1520|consen 287 STLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHLYIGSLF 366 (376)
T ss_pred chHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeEEEcccC
Confidence 999999999999999999987765432 1244567778888999999999999999888889999999999999999
Q ss_pred CCeEEEEeCC
Q 017520 361 SNFIGKVQLS 370 (370)
Q Consensus 361 ~~~i~~~~~~ 370 (370)
.+||+|++|.
T Consensus 367 ~p~i~~lkl~ 376 (376)
T KOG1520|consen 367 NPYIARLKLP 376 (376)
T ss_pred cceeEEEecC
Confidence 9999999974
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.95 E-value=4.3e-26 Score=203.87 Aligned_cols=227 Identities=27% Similarity=0.442 Sum_probs=174.0
Q ss_pred CcceEEcC-CCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEc-CCCcEEEEeCCCceEEEc-CCC-eEEEEe
Q 017520 81 PEDASMDK-NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTST-KEGHLIICDNANGLHKVS-EDG-VENFLS 153 (370)
Q Consensus 81 P~~i~~d~-~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d-~~G~L~v~~~~~gi~~~~-~~g-~~~~~~ 153 (370)
||+++.|+ +|.||+.+ .+++|++++ +++.+.+.... |. |++++ ++|.||+++. .++..++ .+| ++.+..
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~-G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PN-GMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EE-EEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--Cc-eEEEEccCCEEEEEEc-CceEEEecCCCcEEEEee
Confidence 68889996 99999999 789999999 45555443333 88 99999 7899999985 5677778 677 777766
Q ss_pred ecCCc-ccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCE
Q 017520 154 YVNGS-KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY 232 (370)
Q Consensus 154 ~~~g~-~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~ 232 (370)
...+. ++..+|++++|++|++||++....... ....++|++++++ ++++.+..++..||||++++|++.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~ 147 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKT 147 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeEEEEecCcccccceEECCcchh
Confidence 54343 678999999999999999987421110 0011889999998 888888889999999999999999
Q ss_pred EEEEeCCc--EEEEEeCCC--CCCceeeeccC--CCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCc
Q 017520 233 VVVCESWK--CRKYWLKGE--RKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK 306 (370)
Q Consensus 233 l~v~~~~~--l~~~~~~~~--~~~~~~~~~~~--~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (370)
||++++.. |++|+++.. .....+.+.+. ..+.|||+++|++|+||++...+
T Consensus 148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~----------------------- 204 (246)
T PF08450_consen 148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG----------------------- 204 (246)
T ss_dssp EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-----------------------
T ss_pred eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-----------------------
Confidence 99999877 999999643 23444555432 22469999999999999999865
Q ss_pred cccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEE--C-CEEEEEeC
Q 017520 307 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--D-NHLYVISL 359 (370)
Q Consensus 307 ~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~-g~L~~gs~ 359 (370)
+.|.+++++|+++..+..+.. .++.+++. + ++|||.+-
T Consensus 205 -----------~~I~~~~p~G~~~~~i~~p~~----~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 205 -----------GRIVVFDPDGKLLREIELPVP----RPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp -----------TEEEEEETTSCEEEEEE-SSS----SEEEEEEESTTSSEEEEEEB
T ss_pred -----------CEEEEECCCccEEEEEcCCCC----CEEEEEEECCCCCEEEEEeC
Confidence 579999999999999988732 46777774 3 78999874
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.1e-23 Score=191.06 Aligned_cols=232 Identities=25% Similarity=0.406 Sum_probs=177.5
Q ss_pred EEcC-CCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-e-EEEEeecCC
Q 017520 85 SMDK-NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-V-ENFLSYVNG 157 (370)
Q Consensus 85 ~~d~-~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~-~~~~~~~~g 157 (370)
..++ .+.||+.+ .+++|++++ +|+.+.+..+...+. +..++.+|.|++++. |+++++ +++ . +.+.....+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~ 107 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDG 107 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCC
Confidence 4444 55577777 889999999 688888888888888 999998888988774 566666 555 4 777777678
Q ss_pred cccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEe
Q 017520 158 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE 237 (370)
Q Consensus 158 ~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~ 237 (370)
.+.+.+|++.++++|++||++..+ +. ....+....|.|||+|+.++..+.+...+..||||+||||++.+|+++
T Consensus 108 ~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 108 LPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred CCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence 888999999999999999999863 11 233344567899999997555555555599999999999999999999
Q ss_pred CCc--EEEEEeC---CCCCCce-eeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCcccccc
Q 017520 238 SWK--CRKYWLK---GERKGKL-ETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 311 (370)
Q Consensus 238 ~~~--l~~~~~~---~~~~~~~-~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (370)
+.. |++|+.+ +...+.. ..+.+..+|.|||+++|.+|+||++...+
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---------------------------- 233 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---------------------------- 233 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC----------------------------
Confidence 975 9999887 3322221 23334567999999999999999754432
Q ss_pred ccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEEC---CEEEEEeCCCC
Q 017520 312 ITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISLTSN 362 (370)
Q Consensus 312 ~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~---g~L~~gs~~~~ 362 (370)
-+.|.+|+++|+.+..+..|.. .++..++.+ ++||+.+...+
T Consensus 234 -----g~~v~~~~pdG~l~~~i~lP~~----~~t~~~FgG~~~~~L~iTs~~~~ 278 (307)
T COG3386 234 -----GGRVVRFNPDGKLLGEIKLPVK----RPTNPAFGGPDLNTLYITSARSG 278 (307)
T ss_pred -----CceEEEECCCCcEEEEEECCCC----CCccceEeCCCcCEEEEEecCCC
Confidence 1479999999999999998863 355555554 78999988873
No 4
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.89 E-value=1.1e-20 Score=161.52 Aligned_cols=239 Identities=15% Similarity=0.150 Sum_probs=180.6
Q ss_pred eEecCCCcCCCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEec-CCCceeceEEcCCCcEEEEeCCCceEEEc-C
Q 017520 71 IKVGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFI-DSQTLVGLTSTKEGHLIICDNANGLHKVS-E 145 (370)
Q Consensus 71 ~~~~~~~~~~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~-~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~ 145 (370)
..++...-..|..++.++||.+|++. ..|.|-++| +|+++.+.-. +.+|+ +|.+++||..||+|...+|.|++ +
T Consensus 54 ~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~Witd~~~aI~R~dpk 132 (353)
T COG4257 54 AEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSAWITDTGLAIGRLDPK 132 (353)
T ss_pred ceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCeeEecCcceeEEecCc
Confidence 34444334689999999999999887 677899999 8999888654 45799 99999999999999888999999 5
Q ss_pred CC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccc
Q 017520 146 DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANG 223 (370)
Q Consensus 146 ~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~g 223 (370)
+. ++.+.-. ........+..++|++|+|||+... |---|+||.++.++++. .....|+|
T Consensus 133 t~evt~f~lp-~~~a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyG 193 (353)
T COG4257 133 TLEVTRFPLP-LEHADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYG 193 (353)
T ss_pred ccceEEeecc-cccCCCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcc
Confidence 66 6665322 1222346778899999999999754 22227888877777664 34567999
Q ss_pred eEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeecc--CCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHH
Q 017520 224 VALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKH 299 (370)
Q Consensus 224 i~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~--~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~ 299 (370)
||..+||. +|+++..+ |.++|.... ..+.+.. .+..-.+.+-.|+.|++|++++.+
T Consensus 194 i~atpdGs-vwyaslagnaiaridp~~~---~aev~p~P~~~~~gsRriwsdpig~~wittwg~---------------- 253 (353)
T COG4257 194 ICATPDGS-VWYASLAGNAIARIDPFAG---HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGT---------------- 253 (353)
T ss_pred eEECCCCc-EEEEeccccceEEcccccC---CcceecCCCcccccccccccCccCcEEEeccCC----------------
Confidence 99999998 77776655 999986543 3333321 112234567789999999999876
Q ss_pred HHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEe
Q 017520 300 VLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ 368 (370)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~ 368 (370)
+.+.+||+.-+...+|.-++-+ -...+..++.-|++|+.....++|.|++
T Consensus 254 ------------------g~l~rfdPs~~sW~eypLPgs~-arpys~rVD~~grVW~sea~agai~rfd 303 (353)
T COG4257 254 ------------------GSLHRFDPSVTSWIEYPLPGSK-ARPYSMRVDRHGRVWLSEADAGAIGRFD 303 (353)
T ss_pred ------------------ceeeEeCcccccceeeeCCCCC-CCcceeeeccCCcEEeeccccCceeecC
Confidence 6799999988888899887644 3344556666699999999999999987
No 5
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.80 E-value=6.8e-17 Score=169.70 Aligned_cols=242 Identities=19% Similarity=0.258 Sum_probs=170.6
Q ss_pred CcCCCcceEEcC-CCcEEEEe-cCCeEEEEe-CCeEEEEEec---------------CCCceeceEEcCCCc-EEEEeCC
Q 017520 77 SVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGTWVNWKFI---------------DSQTLVGLTSTKEGH-LIICDNA 137 (370)
Q Consensus 77 ~~~~P~~i~~d~-~G~l~v~~-~~g~I~~~~-~g~~~~~~~~---------------~~~p~~gl~~d~~G~-L~v~~~~ 137 (370)
++..|..+++|. +|+|||++ .+++|.+++ +|........ ...|. |++++++|+ |||+|..
T Consensus 566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVADTE 644 (1057)
T ss_pred cCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEeCC
Confidence 478899999996 68899999 778999999 7765443322 23589 999998775 8999976
Q ss_pred -CceEEEc-CCC-eEEEEee------cCC------cccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceE
Q 017520 138 -NGLHKVS-EDG-VENFLSY------VNG------SKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQL 201 (370)
Q Consensus 138 -~gi~~~~-~~g-~~~~~~~------~~g------~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l 201 (370)
+.|.+++ .++ ++.+... ..+ ..++.|.++++++ +|.+||++. .+++|
T Consensus 645 n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~-----------------~~~~I 707 (1057)
T PLN02919 645 NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA-----------------GQHQI 707 (1057)
T ss_pred CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC-----------------CCCeE
Confidence 4678888 566 6665431 011 1256889999999 679999986 34678
Q ss_pred EEEeCCCCeEEEEec---------------CCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCce----------
Q 017520 202 LKYDPSSNITTLVAD---------------GFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKL---------- 254 (370)
Q Consensus 202 ~~~d~~t~~~~~~~~---------------~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~---------- 254 (370)
+++|..++.+..+.. .+..|+|+++++|++.+|+++..+ |.+|++++......
T Consensus 708 ~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~ 787 (1057)
T PLN02919 708 WEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDN 787 (1057)
T ss_pred EEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcc
Confidence 888887666554321 245789999999999999999876 99999865321000
Q ss_pred -eeecc-------CCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCC
Q 017520 255 -ETFAE-------NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED 326 (370)
Q Consensus 255 -~~~~~-------~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~ 326 (370)
..+.+ ..-..|.++++|++|++||+...+ +.|.++|.+
T Consensus 788 l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N----------------------------------~rIrviD~~ 833 (1057)
T PLN02919 788 LFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN----------------------------------HKIKKLDPA 833 (1057)
T ss_pred cccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC----------------------------------CEEEEEECC
Confidence 00100 011258899999999999999765 458888987
Q ss_pred CcEEEEEeCC------CC----CccccceeEEE-ECCEEEEEeCCCCeEEEEeCC
Q 017520 327 GTIIRNLVDP------TG----QLMSFVTSGLQ-VDNHLYVISLTSNFIGKVQLS 370 (370)
Q Consensus 327 g~~~~~~~~~------~g----~~~~~~t~~~~-~~g~L~~gs~~~~~i~~~~~~ 370 (370)
+..+..+... +| ..++.+..+.. .+|+||+++..++.|.+++++
T Consensus 834 tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 834 TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 6655544221 11 11234455554 468999999999999999863
No 6
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.78 E-value=8e-19 Score=128.11 Aligned_cols=86 Identities=52% Similarity=0.950 Sum_probs=72.3
Q ss_pred cceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc--
Q 017520 164 NDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-- 240 (370)
Q Consensus 164 ~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-- 240 (370)
|+++++++ |.|||||+|++|+..++..+++|..++|+|++|||.|++++++.+++.+||||++++|+.+++++|+..
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 68899998 999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EEEEEeCCC
Q 017520 241 CRKYWLKGE 249 (370)
Q Consensus 241 l~~~~~~~~ 249 (370)
|.|||++|+
T Consensus 81 i~rywl~Gp 89 (89)
T PF03088_consen 81 ILRYWLKGP 89 (89)
T ss_dssp EEEEESSST
T ss_pred EEEEEEeCC
Confidence 999999875
No 7
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.68 E-value=2.2e-14 Score=123.24 Aligned_cols=238 Identities=11% Similarity=0.086 Sum_probs=168.9
Q ss_pred cCceEecCCCcCCCcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCCCc----eeceEEcCCCcEEEEeCCCce-
Q 017520 68 QDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQT----LVGLTSTKEGHLIICDNANGL- 140 (370)
Q Consensus 68 ~~~~~~~~~~~~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p----~~gl~~d~~G~L~v~~~~~gi- 140 (370)
.++++++.|.-..|..|.+++||..|+.+....|.|++ ++++++|.-+..++ . ...||+.|+||..... |.
T Consensus 93 Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nle-t~vfD~~G~lWFt~q~-G~y 170 (353)
T COG4257 93 GEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLE-TAVFDPWGNLWFTGQI-GAY 170 (353)
T ss_pred CceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCccc-ceeeCCCccEEEeecc-ccc
Confidence 36777777766789999999999999999655899999 77888886543332 3 5789999999998643 33
Q ss_pred EEEcC-CC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec--
Q 017520 141 HKVSE-DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-- 216 (370)
Q Consensus 141 ~~~~~-~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-- 216 (370)
-++|+ .+ ++++... .| ..+++|++.+||.+|++.- ..+.|.++|+.++..+++..
T Consensus 171 GrLdPa~~~i~vfpaP-qG---~gpyGi~atpdGsvwyasl-----------------agnaiaridp~~~~aev~p~P~ 229 (353)
T COG4257 171 GRLDPARNVISVFPAP-QG---GGPYGICATPDGSVWYASL-----------------AGNAIARIDPFAGHAEVVPQPN 229 (353)
T ss_pred eecCcccCceeeeccC-CC---CCCcceEECCCCcEEEEec-----------------cccceEEcccccCCcceecCCC
Confidence 26774 44 5554322 33 4789999999999999954 23568999998886665432
Q ss_pred C-CCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeec-cCCCCCCCceeECCCCCEEEEEecCchhHHHhhh
Q 017520 217 G-FYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILN 292 (370)
Q Consensus 217 ~-~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~-~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~ 292 (370)
. ......+-.|+.|+ +|+++.+. +.+||+.... ...+- ......|..+.+|..|++|......
T Consensus 230 ~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~s---W~eypLPgs~arpys~rVD~~grVW~sea~a--------- 296 (353)
T COG4257 230 ALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTS---WIEYPLPGSKARPYSMRVDRHGRVWLSEADA--------- 296 (353)
T ss_pred cccccccccccCccCc-EEEeccCCceeeEeCccccc---ceeeeCCCCCCCcceeeeccCCcEEeecccc---------
Confidence 1 11223456678887 89988776 9999976432 22221 1222368889999999999988765
Q ss_pred cchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEe
Q 017520 293 SSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ 368 (370)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~ 368 (370)
+.|.+||++...+..|..+.-. .....+--+.|.+|++.-.-..+.+++
T Consensus 297 -------------------------gai~rfdpeta~ftv~p~pr~n--~gn~ql~gr~ge~W~~e~gvd~lv~~r 345 (353)
T COG4257 297 -------------------------GAIGRFDPETARFTVLPIPRPN--SGNIQLDGRPGELWFTEAGVDALVTTR 345 (353)
T ss_pred -------------------------CceeecCcccceEEEecCCCCC--CCceeccCCCCceeecccCcceeEEEE
Confidence 5699999999999999776532 112233334589999988777776654
No 8
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.64 E-value=4.9e-14 Score=148.30 Aligned_cols=187 Identities=16% Similarity=0.237 Sum_probs=132.2
Q ss_pred cCCCcceEEcCCC-cEEEEe-cCCeEEEEe--CCeEEEEEec-----------------CCCceeceEEcC-CCcEEEEe
Q 017520 78 VNHPEDASMDKNG-VIYTAT-RDGWIKRLQ--DGTWVNWKFI-----------------DSQTLVGLTSTK-EGHLIICD 135 (370)
Q Consensus 78 ~~~P~~i~~d~~G-~l~v~~-~~g~I~~~~--~g~~~~~~~~-----------------~~~p~~gl~~d~-~G~L~v~~ 135 (370)
+..|.+|++|++| .|||++ .++.|.+++ ++.++++... ...|. ++++++ +|.|||++
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~-gVa~dp~~g~LyVad 701 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPW-DVCFEPVNEKVYIAM 701 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCe-EEEEecCCCeEEEEE
Confidence 5679999999865 589998 567888898 5666655321 23688 999998 67899998
Q ss_pred CC-CceEEEc-CCC-eEEEEee-----cC-----CcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceE
Q 017520 136 NA-NGLHKVS-EDG-VENFLSY-----VN-----GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQL 201 (370)
Q Consensus 136 ~~-~gi~~~~-~~g-~~~~~~~-----~~-----g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l 201 (370)
.. +.|++++ .+| +..+... .. ...+..|++|+++++|. |||+|. .+++|
T Consensus 702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs-----------------~n~~I 764 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS-----------------ESSSI 764 (1057)
T ss_pred CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC-----------------CCCeE
Confidence 76 5688888 566 5444321 00 11356789999999986 999986 45789
Q ss_pred EEEeCCCCeEEEEec----------------------CCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceee-
Q 017520 202 LKYDPSSNITTLVAD----------------------GFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLET- 256 (370)
Q Consensus 202 ~~~d~~t~~~~~~~~----------------------~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~- 256 (370)
.++|++++....+.. .+..|.|++++++|+ +||++..+ |.+|+.++....+.-.
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEecc
Confidence 999987765443221 134689999999998 99999877 9999986542111100
Q ss_pred ----ecc-----CCCCCCCceeECCCCCEEEEEecC
Q 017520 257 ----FAE-----NLPGAPDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 257 ----~~~-----~~~g~p~~i~~d~~G~lwv~~~~~ 283 (370)
+.+ ..-..|.++++|++|++||+....
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N 879 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN 879 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence 000 011258999999999999998665
No 9
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.61 E-value=1.4e-13 Score=130.02 Aligned_cols=166 Identities=23% Similarity=0.282 Sum_probs=118.9
Q ss_pred eEecCC-CcCCCcceEEcCCCcEEEEec------------CC-eEEEEe----CCe---EEEEEecCCCceeceEEcCCC
Q 017520 71 IKVGEG-SVNHPEDASMDKNGVIYTATR------------DG-WIKRLQ----DGT---WVNWKFIDSQTLVGLTSTKEG 129 (370)
Q Consensus 71 ~~~~~~-~~~~P~~i~~d~~G~l~v~~~------------~g-~I~~~~----~g~---~~~~~~~~~~p~~gl~~d~~G 129 (370)
+.++.. .+..|..|++|++|+|||++. .+ +|++++ +|+ .+.+......|. ||++.++|
T Consensus 5 ~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~~G 83 (367)
T TIGR02604 5 TLFAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAVGG 83 (367)
T ss_pred EEEECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEecCC
Confidence 444433 478999999999999999962 23 899997 354 466676777899 99999888
Q ss_pred cEEEEeCCCceEEEc-CC------C-eEEEEeecCCc---ccccccceEEcCCCcEEEEeCCCCCCC--ccceecccccC
Q 017520 130 HLIICDNANGLHKVS-ED------G-VENFLSYVNGS---KLRFANDVVEASDGSLYFTVSSSKYLP--HEYCLDILEGK 196 (370)
Q Consensus 130 ~L~v~~~~~gi~~~~-~~------g-~~~~~~~~~g~---~~~~~~~l~~d~~G~l~v~d~~~~~~~--~~~~~~~~~~~ 196 (370)
|||++. ..|+++. .+ + .+.+....... ..+.++++++++||+|||++.+..... ........+..
T Consensus 84 -lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~ 161 (367)
T TIGR02604 84 -VYVATP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQG 161 (367)
T ss_pred -EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccc
Confidence 999874 4688884 32 2 33454443332 346789999999999999987421100 00000111223
Q ss_pred CCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc
Q 017520 197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 240 (370)
Q Consensus 197 ~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~ 240 (370)
..+.++|+++++++.+++..++.+|+|++++++|+ +|+++...
T Consensus 162 ~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~ 204 (367)
T TIGR02604 162 LGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDD 204 (367)
T ss_pred cCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCC
Confidence 45789999999999999999999999999999998 78888754
No 10
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.49 E-value=2.1e-12 Score=115.36 Aligned_cols=142 Identities=20% Similarity=0.376 Sum_probs=105.8
Q ss_pred CcCCCcceEEcCCCcEEEEecC---------CeEEEEe-CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC-CceEEEc
Q 017520 77 SVNHPEDASMDKNGVIYTATRD---------GWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS 144 (370)
Q Consensus 77 ~~~~P~~i~~d~~G~l~v~~~~---------g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~ 144 (370)
.+..|.++++|++|++|+++.. |+|++++ +++.+........|+ ||++++||+ ||+++.. +.|++++
T Consensus 84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pN-Gi~~s~dg~~lyv~ds~~~~i~~~~ 162 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPN-GIAFSPDGKTLYVADSFNGRIWRFD 162 (246)
T ss_dssp CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEE-EEEEETTSSEEEEEETTTTEEEEEE
T ss_pred ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCccccc-ceEECCcchheeecccccceeEEEe
Confidence 4678999999999999999831 6799999 878777777778899 999999995 8999877 5689988
Q ss_pred -C-CC--e---EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC
Q 017520 145 -E-DG--V---ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG 217 (370)
Q Consensus 145 -~-~g--~---~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~ 217 (370)
. .+ + +.+... .+. ...|.+|++|++|+||++.. ..++|+++|+++.....+...
T Consensus 163 ~~~~~~~~~~~~~~~~~-~~~-~g~pDG~~vD~~G~l~va~~-----------------~~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 163 LDADGGELSNRRVFIDF-PGG-PGYPDGLAVDSDGNLWVADW-----------------GGGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp EETTTCCEEEEEEEEE--SSS-SCEEEEEEEBTTS-EEEEEE-----------------TTTEEEEEETTSCEEEEEE-S
T ss_pred ccccccceeeeeeEEEc-CCC-CcCCCcceEcCCCCEEEEEc-----------------CCCEEEEECCCccEEEEEcCC
Confidence 2 23 2 222222 221 14689999999999999975 357999999995555555555
Q ss_pred CCCccceEE-ccCCCEEEEEeC
Q 017520 218 FYFANGVAL-SRDEDYVVVCES 238 (370)
Q Consensus 218 ~~~p~gi~~-~~dg~~l~v~~~ 238 (370)
...|..++| .+|.+.||++..
T Consensus 224 ~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp SSSEEEEEEESTTSSEEEEEEB
T ss_pred CCCEEEEEEECCCCCEEEEEeC
Confidence 568999999 468788999874
No 11
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.48 E-value=2.8e-11 Score=102.05 Aligned_cols=222 Identities=19% Similarity=0.198 Sum_probs=140.0
Q ss_pred CCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCC--cEEEEeCCCceEEEcCCC----eEEEEe---ecC
Q 017520 89 NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG--HLIICDNANGLHKVSEDG----VENFLS---YVN 156 (370)
Q Consensus 89 ~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G--~L~v~~~~~gi~~~~~~g----~~~~~~---~~~ 156 (370)
.+.||..+ ..|.|.|+| ..++.... ..+.|..|..+--.| ..++..-+.....++-+| ...+.. ..+
T Consensus 26 ~~sLl~VDi~ag~v~r~D~~qn~v~ra~-ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 26 RQSLLYVDIEAGEVHRYDIEQNKVYRAK-IEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred cceEEEEEeccCceehhhhhhhheEEEE-EecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 34555555 888999998 43332211 112222143332222 355544343333333222 222222 223
Q ss_pred CcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEE
Q 017520 157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC 236 (370)
Q Consensus 157 g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~ 236 (370)
...-+..|+--+||+|+.|.+..+.. + +.+| ...+.||++-+ .++++.+......+||++||.|.+.+|+.
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~-~------~~le-~~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d~K~fY~i 175 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADF-G------DDLE-PIGGELYSWLA-GHQVELIWNCVGISNGLAWDSDAKKFYYI 175 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccc-c------cccc-ccccEEEEecc-CCCceeeehhccCCccccccccCcEEEEE
Confidence 33345678889999999998866411 1 1111 12345555554 48888888889999999999999999999
Q ss_pred eCCc--E--EEEEeCCCCCCceeeeccC------CCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCc
Q 017520 237 ESWK--C--RKYWLKGERKGKLETFAEN------LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK 306 (370)
Q Consensus 237 ~~~~--l--~~~~~~~~~~~~~~~~~~~------~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (370)
++.+ | +.||..++...+++.+.+. .+-.|||+++|.+|++||++..+
T Consensus 176 Dsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng----------------------- 232 (310)
T KOG4499|consen 176 DSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG----------------------- 232 (310)
T ss_pred ccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC-----------------------
Confidence 9988 7 5566776655555544321 23479999999999999999987
Q ss_pred cccccccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEECC---EEEEEe
Q 017520 307 LFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDN---HLYVIS 358 (370)
Q Consensus 307 ~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g---~L~~gs 358 (370)
+.|+++|+ .|+++..+.-|.- -+|+.++.+. -||+.+
T Consensus 233 -----------~~V~~~dp~tGK~L~eiklPt~----qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 233 -----------GTVQKVDPTTGKILLEIKLPTP----QITSCCFGGKNLDILYVTT 273 (310)
T ss_pred -----------cEEEEECCCCCcEEEEEEcCCC----ceEEEEecCCCccEEEEEe
Confidence 67999997 6999998877653 3677776653 466654
No 12
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.48 E-value=6.7e-11 Score=110.98 Aligned_cols=249 Identities=20% Similarity=0.290 Sum_probs=153.0
Q ss_pred ccccCceEecCCCcCCCcceEEcCCC-cEEEEec----CCeEEEEe---C-CeEEEEE---ecCCCceeceEEcCCCc-E
Q 017520 65 TQLQDFIKVGEGSVNHPEDASMDKNG-VIYTATR----DGWIKRLQ---D-GTWVNWK---FIDSQTLVGLTSTKEGH-L 131 (370)
Q Consensus 65 ~~l~~~~~~~~~~~~~P~~i~~d~~G-~l~v~~~----~g~I~~~~---~-g~~~~~~---~~~~~p~~gl~~d~~G~-L 131 (370)
..|.....+.. ..+|..+++++++ .||+.+. .|.|..+. + |+++... ..+..|. .++++++|+ |
T Consensus 25 g~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~-~i~~~~~g~~l 101 (345)
T PF10282_consen 25 GTLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC-HIAVDPDGRFL 101 (345)
T ss_dssp TEEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE-EEEECTTSSEE
T ss_pred CCceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE-EEEEecCCCEE
Confidence 34444444333 3689999999755 6888875 46888777 4 7766543 2456688 899999996 8
Q ss_pred EEEeCCCc-e--EEEcCCC-eEEEEeec---------CCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCC
Q 017520 132 IICDNANG-L--HKVSEDG-VENFLSYV---------NGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKP 197 (370)
Q Consensus 132 ~v~~~~~g-i--~~~~~~g-~~~~~~~~---------~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~ 197 (370)
|++.+..| + +.++.+| +....... ......+++.+.++|||+ +|++|. +
T Consensus 102 ~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-----------------G 164 (345)
T PF10282_consen 102 YVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-----------------G 164 (345)
T ss_dssp EEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-----------------T
T ss_pred EEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-----------------C
Confidence 88887654 4 3444567 43321110 012235788999999985 888875 3
Q ss_pred CceEEEEeCCCCe--EEE----EecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCC--CCCCceeeeccCCC----C
Q 017520 198 HGQLLKYDPSSNI--TTL----VADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKG--ERKGKLETFAENLP----G 263 (370)
Q Consensus 198 ~g~l~~~d~~t~~--~~~----~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~--~~~~~~~~~~~~~~----g 263 (370)
..+|+.|+.+... +.. .......|..+++++|++.+|+.+... |.+|+++. ........+ ..++ +
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~-~~~~~~~~~ 243 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI-STLPEGFTG 243 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE-ESCETTSCS
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe-eeccccccc
Confidence 4567776654333 433 234556789999999999999998765 88887762 222111111 1221 1
Q ss_pred --CCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEE--EeCCC
Q 017520 264 --APDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRN--LVDPT 337 (370)
Q Consensus 264 --~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-g~~~~~--~~~~~ 337 (370)
.+..|++++||+ +|++..+.. .-.++.+|++ |++... +.. .
T Consensus 244 ~~~~~~i~ispdg~~lyvsnr~~~--------------------------------sI~vf~~d~~~g~l~~~~~~~~-~ 290 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSNRGSN--------------------------------SISVFDLDPATGTLTLVQTVPT-G 290 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEECTTT--------------------------------EEEEEEECTTTTTEEEEEEEEE-S
T ss_pred cCCceeEEEecCCCEEEEEeccCC--------------------------------EEEEEEEecCCCceEEEEEEeC-C
Confidence 466799999996 788765531 2346666544 555432 322 2
Q ss_pred CCccccceeEEE--ECCEEEEEeCCCCeEEEEeCC
Q 017520 338 GQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQLS 370 (370)
Q Consensus 338 g~~~~~~t~~~~--~~g~L~~gs~~~~~i~~~~~~ 370 (370)
|. ....+.. .+..||+++..++.|.++++|
T Consensus 291 G~---~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 291 GK---FPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SS---SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CC---CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 33 3445544 347899999999999998763
No 13
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.45 E-value=2.5e-10 Score=106.52 Aligned_cols=235 Identities=13% Similarity=0.152 Sum_probs=140.8
Q ss_pred CCCcceEEcCCCc-EEEEe-cCCeEEEEe---CCeEEEEE--ecCCCceeceEEcCCCc-EEEEeCC-CceEEEc--CCC
Q 017520 79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ---DGTWVNWK--FIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS--EDG 147 (370)
Q Consensus 79 ~~P~~i~~d~~G~-l~v~~-~~g~I~~~~---~g~~~~~~--~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~--~~g 147 (370)
.+|..++++++|+ ||+++ .++.|..|+ +|+++... ...+.|. .++++++|+ ||++... +.+..++ ++|
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 4799999999885 78887 567787666 45554322 2345788 999999996 7887754 3455555 455
Q ss_pred -eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCC-CeEEE------EecCC
Q 017520 148 -VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTL------VADGF 218 (370)
Q Consensus 148 -~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-~~~~~------~~~~~ 218 (370)
.........+ ...++.++++++|+ +|+++. ..+.|..||.++ +.+.. .....
T Consensus 114 ~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~-----------------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g 174 (330)
T PRK11028 114 IPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCL-----------------KEDRIRLFTLSDDGHLVAQEPAEVTTVEG 174 (330)
T ss_pred CCCCceeeccC--CCcccEeEeCCCCCEEEEeeC-----------------CCCEEEEEEECCCCcccccCCCceecCCC
Confidence 3222121222 23578889999985 777764 346788887654 32211 11223
Q ss_pred CCccceEEccCCCEEEEEeCCc--EEEEEeCCC--CCCceeeeccCC------CCCCCceeECCCCC-EEEEEecCchhH
Q 017520 219 YFANGVALSRDEDYVVVCESWK--CRKYWLKGE--RKGKLETFAENL------PGAPDNINLAPDGT-FWIAIIKLDARR 287 (370)
Q Consensus 219 ~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~--~~~~~~~~~~~~------~g~p~~i~~d~~G~-lwv~~~~~~~~~ 287 (370)
..|.++++++||+.+|+++... |..|+++.. +......+. .. +..+..+.++++|+ +|++....+
T Consensus 175 ~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~--- 250 (330)
T PRK11028 175 AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD-MMPADFSDTRWAADIHITPDGRHLYACDRTAS--- 250 (330)
T ss_pred CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe-cCCCcCCCCccceeEEECCCCCEEEEecCCCC---
Confidence 5688999999999999998744 888887632 211111111 11 11334588999996 777643321
Q ss_pred HHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeC-CCCCccccceeEEE--ECCEEEEEeCCCCeE
Q 017520 288 MKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD-PTGQLMSFVTSGLQ--VDNHLYVISLTSNFI 364 (370)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~-~~g~~~~~~t~~~~--~~g~L~~gs~~~~~i 364 (370)
.-.++.+++++..+..... +.|. ....+.. ++..||+++...+.|
T Consensus 251 -----------------------------~I~v~~i~~~~~~~~~~~~~~~~~---~p~~~~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 251 -----------------------------LISVFSVSEDGSVLSFEGHQPTET---QPRGFNIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred -----------------------------eEEEEEEeCCCCeEEEeEEEeccc---cCCceEECCCCCEEEEEEccCCcE
Confidence 1235555666543332211 1121 1222332 346788888878888
Q ss_pred EEEeC
Q 017520 365 GKVQL 369 (370)
Q Consensus 365 ~~~~~ 369 (370)
.++++
T Consensus 299 ~v~~~ 303 (330)
T PRK11028 299 SVYEI 303 (330)
T ss_pred EEEEE
Confidence 88765
No 14
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.33 E-value=1.1e-09 Score=102.77 Aligned_cols=196 Identities=18% Similarity=0.232 Sum_probs=120.8
Q ss_pred cccCceEecCCCcCCCcceEEcCCC-cEEEEe-cCCeEEEEe---CCeEEEEE--------------ecCCCceeceEEc
Q 017520 66 QLQDFIKVGEGSVNHPEDASMDKNG-VIYTAT-RDGWIKRLQ---DGTWVNWK--------------FIDSQTLVGLTST 126 (370)
Q Consensus 66 ~l~~~~~~~~~~~~~P~~i~~d~~G-~l~v~~-~~g~I~~~~---~g~~~~~~--------------~~~~~p~~gl~~d 126 (370)
.|.....+... -..|..|++|++| .||+++ .+|.|..++ +|++.... .....|+ .+.++
T Consensus 75 ~L~~~~~~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H-~v~~~ 152 (345)
T PF10282_consen 75 TLTLLNSVPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH-QVVFS 152 (345)
T ss_dssp EEEEEEEEEES-SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE-EEEE-
T ss_pred eeEEeeeeccC-CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccce-eEEEC
Confidence 34444444422 2589999999877 578887 678887777 56544321 0134578 89999
Q ss_pred CCCc-EEEEeCC-CceEEEc--C-CC-eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCc
Q 017520 127 KEGH-LIICDNA-NGLHKVS--E-DG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHG 199 (370)
Q Consensus 127 ~~G~-L~v~~~~-~gi~~~~--~-~g-~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g 199 (370)
++|+ +|+++.+ ..|+.++ . .+ +...... .-.....|..++++++| .+|+.+.. .+
T Consensus 153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~-----------------s~ 214 (345)
T PF10282_consen 153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNEL-----------------SN 214 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETT-----------------TT
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCC-----------------CC
Confidence 9996 8998876 4566666 2 33 4332211 11223578999999998 58888652 34
Q ss_pred eEE--EEeCCCCeEEEEe------c---CCCCccceEEccCCCEEEEEeCCc--EEEEEeCCC--CCCceeeeccCCCCC
Q 017520 200 QLL--KYDPSSNITTLVA------D---GFYFANGVALSRDEDYVVVCESWK--CRKYWLKGE--RKGKLETFAENLPGA 264 (370)
Q Consensus 200 ~l~--~~d~~t~~~~~~~------~---~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~--~~~~~~~~~~~~~g~ 264 (370)
.|. .++.+++.++... . +...+.+|++++||++||+++.+. |..|+++.. +......+ ......
T Consensus 215 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~-~~~G~~ 293 (345)
T PF10282_consen 215 TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV-PTGGKF 293 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE-EESSSS
T ss_pred cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE-eCCCCC
Confidence 444 4444456554432 1 123578899999999999999887 888988532 22222222 222346
Q ss_pred CCceeECCCCC-EEEEEec
Q 017520 265 PDNINLAPDGT-FWIAIIK 282 (370)
Q Consensus 265 p~~i~~d~~G~-lwv~~~~ 282 (370)
|++++++++|+ +||+...
T Consensus 294 Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 294 PRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp EEEEEE-TTSSEEEEEETT
T ss_pred ccEEEEeCCCCEEEEEecC
Confidence 99999999997 6666544
No 15
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=7.8e-09 Score=92.60 Aligned_cols=242 Identities=15% Similarity=0.203 Sum_probs=149.8
Q ss_pred cCCCcceEEcCCC-cEEEEec---CCeEEEEe----CCeEEEEEec--CC-CceeceEEcCCCc-EEEEeCCCceEEEc-
Q 017520 78 VNHPEDASMDKNG-VIYTATR---DGWIKRLQ----DGTWVNWKFI--DS-QTLVGLTSTKEGH-LIICDNANGLHKVS- 144 (370)
Q Consensus 78 ~~~P~~i~~d~~G-~l~v~~~---~g~I~~~~----~g~~~~~~~~--~~-~p~~gl~~d~~G~-L~v~~~~~gi~~~~- 144 (370)
+.+|.-|++++++ .||++.. .|+|..+. +|+++..... .+ .|. -+++|++|+ |+++.+..|.+.+-
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~-yvsvd~~g~~vf~AnY~~g~v~v~p 117 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC-YVSVDEDGRFVFVANYHSGSVSVYP 117 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe-EEEECCCCCEEEEEEccCceEEEEE
Confidence 5689999999877 7998873 56776665 4777765432 23 346 799999996 67777666644443
Q ss_pred --CCC-eEEEEe---ecCC-----cccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE
Q 017520 145 --EDG-VENFLS---YVNG-----SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT 212 (370)
Q Consensus 145 --~~g-~~~~~~---~~~g-----~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~ 212 (370)
.+| +..... .... ....+++...++|+|+ |++.|- +..+++.|+.+.+..+
T Consensus 118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL-----------------G~Dri~~y~~~dg~L~ 180 (346)
T COG2706 118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL-----------------GTDRIFLYDLDDGKLT 180 (346)
T ss_pred cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec-----------------CCceEEEEEcccCccc
Confidence 567 333221 1111 1123467788999995 555554 4467888877766655
Q ss_pred EEe----cCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeec--cCCCC-C-----CCceeECCCCCEEE
Q 017520 213 LVA----DGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFA--ENLPG-A-----PDNINLAPDGTFWI 278 (370)
Q Consensus 213 ~~~----~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~--~~~~g-~-----p~~i~~d~~G~lwv 278 (370)
... .....|.-|+|+|+++..|+...-+ |.+|..+.. .++++.+. ..+|. + ...|.+++||++..
T Consensus 181 ~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY 259 (346)
T COG2706 181 PADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY 259 (346)
T ss_pred cccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEE
Confidence 432 3456788899999999999886544 555544432 23333221 12221 1 12377899998666
Q ss_pred EEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEE--eCCCCCccccceeEEEECCEEEE
Q 017520 279 AIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNL--VDPTGQLMSFVTSGLQVDNHLYV 356 (370)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~--~~~~g~~~~~~t~~~~~~g~L~~ 356 (370)
+++.+.+ .-.++++|++|..+... ....|+ ..---.+...++.|+.
T Consensus 260 asNRg~d-------------------------------sI~~f~V~~~~g~L~~~~~~~teg~-~PR~F~i~~~g~~Lia 307 (346)
T COG2706 260 ASNRGHD-------------------------------SIAVFSVDPDGGKLELVGITPTEGQ-FPRDFNINPSGRFLIA 307 (346)
T ss_pred EecCCCC-------------------------------eEEEEEEcCCCCEEEEEEEeccCCc-CCccceeCCCCCEEEE
Confidence 6655422 13478889987765543 333444 1111233334567999
Q ss_pred EeCCCCeEEEEeCC
Q 017520 357 ISLTSNFIGKVQLS 370 (370)
Q Consensus 357 gs~~~~~i~~~~~~ 370 (370)
.+-+++.|.++..|
T Consensus 308 a~q~sd~i~vf~~d 321 (346)
T COG2706 308 ANQKSDNITVFERD 321 (346)
T ss_pred EccCCCcEEEEEEc
Confidence 99999989888754
No 16
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.25 E-value=2e-10 Score=108.08 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=94.5
Q ss_pred CcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecC--CCceeceEEcCCCcEEEEeCCCceEEEcCCC--eEEEEee
Q 017520 81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFID--SQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSY 154 (370)
Q Consensus 81 P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~--~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~~~~~ 154 (370)
-..+.+|.+|.+|+|+.+| +++|+ .|+........ ...+ .+..|..|+|||++ ..|++..++-| +....
T Consensus 167 V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~-al~~d~qg~LWVGT-dqGv~~~e~~G~~~sn~~-- 241 (671)
T COG3292 167 VVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAIN-ALIADVQGRLWVGT-DQGVYLQEAEGWRASNWG-- 241 (671)
T ss_pred ceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHH-HHHHHhcCcEEEEe-ccceEEEchhhccccccC--
Confidence 4457889999999999887 99999 56655443322 2345 67888899999997 46999998655 32221
Q ss_pred cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe----cCCCCccceEEccCC
Q 017520 155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA----DGFYFANGVALSRDE 230 (370)
Q Consensus 155 ~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~----~~~~~p~gi~~~~dg 230 (370)
...+...+..+..|.+|++||++. .++.|+....+.+.... .+....+++..|.||
T Consensus 242 -~~lp~~~I~ll~qD~qG~lWiGTe-------------------nGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dG 301 (671)
T COG3292 242 -PMLPSGNILLLVQDAQGELWIGTE-------------------NGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDG 301 (671)
T ss_pred -CCCcchheeeeecccCCCEEEeec-------------------ccceeEecCCCCccccccccCCccccccceeeccCC
Confidence 223345667788899999999965 34666654433333221 123345788888999
Q ss_pred CEEEEEeCCcEEEEE
Q 017520 231 DYVVVCESWKCRKYW 245 (370)
Q Consensus 231 ~~l~v~~~~~l~~~~ 245 (370)
. +|+...+++++|.
T Consensus 302 s-LWv~t~~giv~~~ 315 (671)
T COG3292 302 S-LWVGTYGGIVRYL 315 (671)
T ss_pred C-EeeeccCceEEEe
Confidence 8 8888887766654
No 17
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=8.4e-09 Score=92.40 Aligned_cols=187 Identities=18% Similarity=0.281 Sum_probs=120.2
Q ss_pred CCCcceEEcCCC-cEEEEe-cCCeEEEEe---CCeEEE----EEecCC---------CceeceEEcCCCc-EEEEeCC-C
Q 017520 79 NHPEDASMDKNG-VIYTAT-RDGWIKRLQ---DGTWVN----WKFIDS---------QTLVGLTSTKEGH-LIICDNA-N 138 (370)
Q Consensus 79 ~~P~~i~~d~~G-~l~v~~-~~g~I~~~~---~g~~~~----~~~~~~---------~p~~gl~~d~~G~-L~v~~~~-~ 138 (370)
..|..|++|++| .|++++ ..|.|.++. +|.+.. ...... .++ ...++|+|+ |++.|-+ .
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H-~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH-SANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc-eeeeCCCCCEEEEeecCCc
Confidence 467999999999 567777 556666665 665332 222222 145 677889995 7777766 5
Q ss_pred ceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe
Q 017520 139 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 215 (370)
Q Consensus 139 gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~ 215 (370)
.|+.++ .+| ++..... .-.+...|..|++.|+|+ .|+.... ...=-++.||+..++++.+.
T Consensus 168 ri~~y~~~dg~L~~~~~~-~v~~G~GPRHi~FHpn~k~aY~v~EL---------------~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 168 RIFLYDLDDGKLTPADPA-EVKPGAGPRHIVFHPNGKYAYLVNEL---------------NSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred eEEEEEcccCcccccccc-ccCCCCCcceEEEcCCCcEEEEEecc---------------CCEEEEEEEcCCCceEEEee
Confidence 777777 667 4433221 112335788999999996 6766531 12234667777667776553
Q ss_pred c---------CCCCccceEEccCCCEEEEEeCCc--EEEEEeC--CCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520 216 D---------GFYFANGVALSRDEDYVVVCESWK--CRKYWLK--GERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 282 (370)
Q Consensus 216 ~---------~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~--~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 282 (370)
. +......|.+++||++||+++++. |..|.++ +.++...+ ........|+.+.+++.|++.++.++
T Consensus 232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~-~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 232 TIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG-ITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred eeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE-EeccCCcCCccceeCCCCCEEEEEcc
Confidence 2 223345688999999999999987 6555554 43332222 22233335999999999998888876
Q ss_pred C
Q 017520 283 L 283 (370)
Q Consensus 283 ~ 283 (370)
.
T Consensus 311 ~ 311 (346)
T COG2706 311 K 311 (346)
T ss_pred C
Confidence 4
No 18
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.23 E-value=1.9e-08 Score=93.88 Aligned_cols=170 Identities=11% Similarity=0.080 Sum_probs=107.6
Q ss_pred cEEEEe-cCCeEEEEe---CCeEEEE--EecCCCceeceEEcCCCc-EEEEeCC-CceEEEc--CCC-eEEEEeecCCcc
Q 017520 91 VIYTAT-RDGWIKRLQ---DGTWVNW--KFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS--EDG-VENFLSYVNGSK 159 (370)
Q Consensus 91 ~l~v~~-~~g~I~~~~---~g~~~~~--~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~--~~g-~~~~~~~~~g~~ 159 (370)
.+|+++ .++.|..|+ +|+++.. ....+.|. .++++++|+ ||++... .+|..++ ++| ++.......+
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~-~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~-- 79 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQ-PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP-- 79 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCc-cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC--
Confidence 478886 577898888 3554332 23446688 999999996 7888654 5675555 456 5433222111
Q ss_pred cccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCC-CeE-E--EEecCCCCccceEEccCCCEEE
Q 017520 160 LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NIT-T--LVADGFYFANGVALSRDEDYVV 234 (370)
Q Consensus 160 ~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-~~~-~--~~~~~~~~p~gi~~~~dg~~l~ 234 (370)
..|..++++++|+ +|++.. ..+.|..|+.++ +.. + ....+...|.++++++|++.+|
T Consensus 80 -~~p~~i~~~~~g~~l~v~~~-----------------~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~ 141 (330)
T PRK11028 80 -GSPTHISTDHQGRFLFSASY-----------------NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLW 141 (330)
T ss_pred -CCceEEEECCCCCEEEEEEc-----------------CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEE
Confidence 2577899999996 666643 236667776542 211 1 1123445788999999999999
Q ss_pred EEeCCc--EEEEEeCCCC-CCc--eeeeccCCCCCCCceeECCCCC-EEEEEe
Q 017520 235 VCESWK--CRKYWLKGER-KGK--LETFAENLPGAPDNINLAPDGT-FWIAII 281 (370)
Q Consensus 235 v~~~~~--l~~~~~~~~~-~~~--~~~~~~~~~g~p~~i~~d~~G~-lwv~~~ 281 (370)
+++.+. |..|+++... ... ...........|+.++++++|+ +|++..
T Consensus 142 v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 142 VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred EeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec
Confidence 999875 9999986421 110 0011101233588999999996 667654
No 19
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.21 E-value=5.7e-09 Score=97.11 Aligned_cols=158 Identities=20% Similarity=0.318 Sum_probs=102.3
Q ss_pred cCCCcceEEcCCCcEEEEecCCeEEEEe-CCeE-EEEEec-------CCCceeceEEcCC----CcEEEEeCC-------
Q 017520 78 VNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTW-VNWKFI-------DSQTLVGLTSTKE----GHLIICDNA------- 137 (370)
Q Consensus 78 ~~~P~~i~~d~~G~l~v~~~~g~I~~~~-~g~~-~~~~~~-------~~~p~~gl~~d~~----G~L~v~~~~------- 137 (370)
|..|.+|++.+||++||+...|+|++++ +|.. ..+... ....+ |++++++ +.||++...
T Consensus 1 L~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 1 LNNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp ESSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CCCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcc-cceeccccCCCCEEEEEEEcccCCCCC
Confidence 4689999999999999999999999999 7765 333221 12356 9999984 889998652
Q ss_pred --CceEEEc--CC-C----eEEEEeecCC--cccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeC
Q 017520 138 --NGLHKVS--ED-G----VENFLSYVNG--SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP 206 (370)
Q Consensus 138 --~gi~~~~--~~-g----~~~~~~~~~g--~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 206 (370)
..|.++. .+ . .+.+....+. ...+....|++++||.|||+...... .....+ .....|.|+|+++
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~--~~~~~G~ilri~~ 155 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQD--PNSLRGKILRIDP 155 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCS--TTSSTTEEEEEET
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--cccccc--cccccceEEEecc
Confidence 2477766 23 1 2333332222 23456677999999999999764221 111111 1234689999998
Q ss_pred CCC-------------eEEEEecCCCCccceEEccCCCEEEEEeCCc
Q 017520 207 SSN-------------ITTLVADGFYFANGVALSRDEDYVVVCESWK 240 (370)
Q Consensus 207 ~t~-------------~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~ 240 (370)
++. ..++++.++++|.++++++....||+++.+.
T Consensus 156 dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~ 202 (331)
T PF07995_consen 156 DGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP 202 (331)
T ss_dssp TSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred cCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC
Confidence 754 3467788999999999999934499998654
No 20
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=2.6e-09 Score=97.45 Aligned_cols=145 Identities=19% Similarity=0.345 Sum_probs=104.1
Q ss_pred CCcCCCcceEEcCCCcEEEEecC------------CeEEEEe-CCeEEEEEec-CCCceeceEEcCCC-cEEEEeCC-Cc
Q 017520 76 GSVNHPEDASMDKNGVIYTATRD------------GWIKRLQ-DGTWVNWKFI-DSQTLVGLTSTKEG-HLIICDNA-NG 139 (370)
Q Consensus 76 ~~~~~P~~i~~d~~G~l~v~~~~------------g~I~~~~-~g~~~~~~~~-~~~p~~gl~~d~~G-~L~v~~~~-~g 139 (370)
.+...|.++.+|++|.+|+++.. |.||+++ .|..++.... ...|+ ||++++|| .||++|+. ..
T Consensus 108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N-Gla~SpDg~tly~aDT~~~~ 186 (307)
T COG3386 108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN-GLAFSPDGKTLYVADTPANR 186 (307)
T ss_pred CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC-ceEECCCCCEEEEEeCCCCe
Confidence 34578999999999999999854 5699999 7766665544 66789 99999999 69999987 57
Q ss_pred eEEEc-C--CC----eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE
Q 017520 140 LHKVS-E--DG----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT 212 (370)
Q Consensus 140 i~~~~-~--~g----~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~ 212 (370)
|++++ . ++ ....... ...-..|.++++|.+|++|++... ..++|.+|+|+.....
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~~--~~~~G~PDG~~vDadG~lw~~a~~----------------~g~~v~~~~pdG~l~~ 248 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVDF--DEEPGLPDGMAVDADGNLWVAAVW----------------GGGRVVRFNPDGKLLG 248 (307)
T ss_pred EEEEecCcccCccCCcceEEEc--cCCCCCCCceEEeCCCCEEEeccc----------------CCceEEEECCCCcEEE
Confidence 88887 3 23 1111111 112247889999999999975321 2248999999955555
Q ss_pred EEecCCCCccceEEc-cCCCEEEEEeCC
Q 017520 213 LVADGFYFANGVALS-RDEDYVVVCESW 239 (370)
Q Consensus 213 ~~~~~~~~p~gi~~~-~dg~~l~v~~~~ 239 (370)
.+.-....+..++|- ++.+.||++...
T Consensus 249 ~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 249 EIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred EEECCCCCCccceEeCCCcCEEEEEecC
Confidence 554444566667764 567889998864
No 21
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.18 E-value=1.1e-07 Score=86.72 Aligned_cols=180 Identities=15% Similarity=0.119 Sum_probs=110.7
Q ss_pred CCCcceEEcCCCc-EEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC-CceEEEc-CCC--eE
Q 017520 79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG--VE 149 (370)
Q Consensus 79 ~~P~~i~~d~~G~-l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~~g--~~ 149 (370)
..|.+++++++|. +|++. .++.|..++ +++..........+. .++++++|+ +|++... +.+..++ .++ +.
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~ 109 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETRKVLA 109 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence 3588899999886 66654 678899999 555543333334466 788999987 6676543 4566677 444 22
Q ss_pred EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccC
Q 017520 150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD 229 (370)
Q Consensus 150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~d 229 (370)
.+. .+ ..+.+++++++|.+++.... ....++.+|..+++..........|..+++++|
T Consensus 110 ~~~---~~---~~~~~~~~~~dg~~l~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~d 167 (300)
T TIGR03866 110 EIP---VG---VEPEGMAVSPDGKIVVNTSE----------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTAD 167 (300)
T ss_pred Eee---CC---CCcceEEECCCCCEEEEEec----------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCC
Confidence 221 11 24678999999987766432 123466678876655432222345778999999
Q ss_pred CCEEEEEeC-Cc-EEEEEeCCCCCCceeeec-cC---CCCCCCceeECCCCCE-EEEEe
Q 017520 230 EDYVVVCES-WK-CRKYWLKGERKGKLETFA-EN---LPGAPDNINLAPDGTF-WIAII 281 (370)
Q Consensus 230 g~~l~v~~~-~~-l~~~~~~~~~~~~~~~~~-~~---~~g~p~~i~~d~~G~l-wv~~~ 281 (370)
++.++++.. .+ |..||+.+.+......+. .. ....|.+++++++|+. |++..
T Consensus 168 g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 168 GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence 998877754 44 888998654221111110 00 1113567889999975 66653
No 22
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.18 E-value=1e-09 Score=103.45 Aligned_cols=203 Identities=16% Similarity=0.216 Sum_probs=122.4
Q ss_pred ceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecCCccc-ccccceEEcCCCcEEEEeCCCCCCCccceecccccCCC
Q 017520 122 GLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKL-RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 198 (370)
Q Consensus 122 gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~-~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 198 (370)
.+.+|..|+|||+. .+|+++|+ ..| .-.+... ++ ..++.+..|-.|++||++.
T Consensus 169 aLv~D~~g~lWvgT-~dGL~~fd~~~gkalql~s~----~~dk~I~al~~d~qg~LWVGTd------------------- 224 (671)
T COG3292 169 ALVFDANGRLWVGT-PDGLSYFDAGRGKALQLASP----PLDKAINALIADVQGRLWVGTD------------------- 224 (671)
T ss_pred eeeeeccCcEEEec-CCcceEEccccceEEEcCCC----cchhhHHHHHHHhcCcEEEEec-------------------
Confidence 57889999999987 46999999 456 4433222 22 4678889999999999954
Q ss_pred ceEEEEeCCCCeEEEEecCCCCccc----eEEccCCCEEEEEeCCcEEEEEeCCCCCCceeeeccCCCC--CCCceeECC
Q 017520 199 GQLLKYDPSSNITTLVADGFYFANG----VALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPG--APDNINLAP 272 (370)
Q Consensus 199 g~l~~~d~~t~~~~~~~~~~~~p~g----i~~~~dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~~~~~g--~p~~i~~d~ 272 (370)
.+++++++.+.... ..+...|.+ +.-|.+|. +|+....+++|+..+........ .....+ ....+..|.
T Consensus 225 qGv~~~e~~G~~~s--n~~~~lp~~~I~ll~qD~qG~-lWiGTenGl~r~~l~rq~Lq~~~--~~~~l~~S~vnsL~~D~ 299 (671)
T COG3292 225 QGVYLQEAEGWRAS--NWGPMLPSGNILLLVQDAQGE-LWIGTENGLWRTRLPRQGLQIPL--SKMHLGVSTVNSLWLDT 299 (671)
T ss_pred cceEEEchhhcccc--ccCCCCcchheeeeecccCCC-EEEeecccceeEecCCCCccccc--cccCCccccccceeecc
Confidence 57999988763332 233344443 34466776 77777777888876544222111 112222 235688999
Q ss_pred CCCEEEEEecCchhHHHhhhcchhHHH------------HHHhCCccccc-cccCCCceEEEEEC-CCCcEEEEEeCCCC
Q 017520 273 DGTFWIAIIKLDARRMKILNSSKLIKH------------VLAAYPKLFSQ-FITLGGGAHLIHVA-EDGTIIRNLVDPTG 338 (370)
Q Consensus 273 ~G~lwv~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~~~~~g~v~~~~-~~g~~~~~~~~~~g 338 (370)
+|++|+++..+-..+. ..++++. .....|+...+ ..+....|.+...+ ..|.++++.+...|
T Consensus 300 dGsLWv~t~~giv~~~----~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg 375 (671)
T COG3292 300 DGSLWVGTYGGIVRYL----TADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRG 375 (671)
T ss_pred CCCEeeeccCceEEEe----cchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccc
Confidence 9999999987532111 1122221 12223333222 12233444555555 46888887655555
Q ss_pred CccccceeEEEE-CCEEEEEeCC
Q 017520 339 QLMSFVTSGLQV-DNHLYVISLT 360 (370)
Q Consensus 339 ~~~~~~t~~~~~-~g~L~~gs~~ 360 (370)
. .++.++++ ++.+|+||..
T Consensus 376 ~---nit~~~~d~~g~lWlgs~q 395 (671)
T COG3292 376 M---NITTTLEDSRGRLWLGSMQ 395 (671)
T ss_pred c---ccchhhhccCCcEEEEecc
Confidence 3 34555544 6899999976
No 23
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.15 E-value=4.3e-08 Score=99.79 Aligned_cols=190 Identities=18% Similarity=0.255 Sum_probs=127.7
Q ss_pred CCCcceEEcC-CCcEEEEe-cCCeEEEEe--C-----CeEEEEEe----------cCC-----------CceeceEEcCC
Q 017520 79 NHPEDASMDK-NGVIYTAT-RDGWIKRLQ--D-----GTWVNWKF----------IDS-----------QTLVGLTSTKE 128 (370)
Q Consensus 79 ~~P~~i~~d~-~G~l~v~~-~~g~I~~~~--~-----g~~~~~~~----------~~~-----------~p~~gl~~d~~ 128 (370)
..-..||+|+ +|.||+++ ...+|+|+. . +.++..+. .|| .|. ||++|.+
T Consensus 407 sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~Pk-GIa~dk~ 485 (1899)
T KOG4659|consen 407 SHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPK-GIAFDKM 485 (1899)
T ss_pred cceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCC-ceeEccC
Confidence 3445699998 99999999 557899987 1 23444431 122 478 9999999
Q ss_pred CcEEEEeCCCceEEEcCCC-eEEEEeec---------------CCcccccccceEEcC-CCcEEEEeCCCCCCCccceec
Q 017520 129 GHLIICDNANGLHKVSEDG-VENFLSYV---------------NGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLD 191 (370)
Q Consensus 129 G~L~v~~~~~gi~~~~~~g-~~~~~~~~---------------~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~ 191 (370)
|.||.+|. ..|..+|.+| +..+.... ....+..|.+|+++| |+.+||-|.
T Consensus 486 g~lYfaD~-t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~------------ 552 (1899)
T KOG4659|consen 486 GNLYFADG-TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT------------ 552 (1899)
T ss_pred CcEEEecc-cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec------------
Confidence 99999984 5799999999 66664321 112456899999998 789999976
Q ss_pred ccccCCCceEEEEeCCCCeEEEEec---------------------CCCCccceEEccCCCEEEEEeCCc-----EEEEE
Q 017520 192 ILEGKPHGQLLKYDPSSNITTLVAD---------------------GFYFANGVALSRDEDYVVVCESWK-----CRKYW 245 (370)
Q Consensus 192 ~~~~~~~g~l~~~d~~t~~~~~~~~---------------------~~~~p~gi~~~~dg~~l~v~~~~~-----l~~~~ 245 (370)
+-|+++++. ..+.+.+. .+-.+..|+++++|. ||++|+.+ |.++.
T Consensus 553 -------nvvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~~~ 623 (1899)
T KOG4659|consen 553 -------NVVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRKLS 623 (1899)
T ss_pred -------ceEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEEec
Confidence 356666654 34433321 122356799999997 99999987 44444
Q ss_pred eCCCCCCceeeecc-------------------------CCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHH
Q 017520 246 LKGERKGKLETFAE-------------------------NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV 300 (370)
Q Consensus 246 ~~~~~~~~~~~~~~-------------------------~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~ 300 (370)
-+|. ...+.. ..-.-|..+|+.+||+++|++.++ --+|++
T Consensus 624 tdg~----i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN-----------~rIr~V 688 (1899)
T KOG4659|consen 624 TDGT----ISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGN-----------SRIRKV 688 (1899)
T ss_pred cCce----EEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCc-----------hhhhhh
Confidence 3332 111110 011247779999999999999775 235666
Q ss_pred HHhCCc
Q 017520 301 LAAYPK 306 (370)
Q Consensus 301 ~~~~~~ 306 (370)
.+..|.
T Consensus 689 s~~~~~ 694 (1899)
T KOG4659|consen 689 SARMAK 694 (1899)
T ss_pred hhcccc
Confidence 665554
No 24
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.06 E-value=4.6e-07 Score=82.50 Aligned_cols=164 Identities=17% Similarity=0.216 Sum_probs=102.4
Q ss_pred CcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC-CceEEEc-CCC-eEEEEeecCCccccc
Q 017520 90 GVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRF 162 (370)
Q Consensus 90 G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~~g-~~~~~~~~~g~~~~~ 162 (370)
+++|++. .+|.|..++ +++..........+. +++++++|. +|++... +.+..++ .++ ...... .+ ..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~---~~ 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--SG---PD 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--CC---CC
Confidence 3577665 688899999 565444334445678 999999997 6676544 4577777 555 322111 11 23
Q ss_pred ccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-
Q 017520 163 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK- 240 (370)
Q Consensus 163 ~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~- 240 (370)
+..++++++|+ +|++.. ..+.|..+|.++++..........+.++++++||+.++++...+
T Consensus 75 ~~~~~~~~~g~~l~~~~~-----------------~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~ 137 (300)
T TIGR03866 75 PELFALHPNGKILYIANE-----------------DDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTN 137 (300)
T ss_pred ccEEEECCCCCEEEEEcC-----------------CCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCC
Confidence 55788999986 666643 34689999987665433333334578999999999777776654
Q ss_pred -EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEE
Q 017520 241 -CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI 280 (370)
Q Consensus 241 -l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~ 280 (370)
+..|+..+.+. ..... ....|..+.++++|. +|++.
T Consensus 138 ~~~~~d~~~~~~--~~~~~--~~~~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 138 MAHFIDTKTYEI--VDNVL--VDQRPRFAEFTADGKELWVSS 175 (300)
T ss_pred eEEEEeCCCCeE--EEEEE--cCCCccEEEECCCCCEEEEEc
Confidence 55667543211 11111 123467788999997 44554
No 25
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=99.05 E-value=1.6e-07 Score=87.66 Aligned_cols=167 Identities=17% Similarity=0.186 Sum_probs=102.9
Q ss_pred CceEecCCCcCCCcceEEcCCCcEEEEecC-CeEEEEeCCe---------EEEEE----------------ecCCCceec
Q 017520 69 DFIKVGEGSVNHPEDASMDKNGVIYTATRD-GWIKRLQDGT---------WVNWK----------------FIDSQTLVG 122 (370)
Q Consensus 69 ~~~~~~~~~~~~P~~i~~d~~G~l~v~~~~-g~I~~~~~g~---------~~~~~----------------~~~~~p~~g 122 (370)
..+.++.| +..|..++..++|.+.+.... |.+..+.+|. ...+. .....++ +
T Consensus 58 ~~~~~a~g-Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~-~ 135 (399)
T COG2133 58 SVEVVAQG-LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYF-G 135 (399)
T ss_pred eccccccc-ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeee-E
Confidence 34455666 889999999999955565544 7666665221 11111 1112345 5
Q ss_pred eEEcCCCcEEEEeCCCceEEEc-CCC----eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceec-----c
Q 017520 123 LTSTKEGHLIICDNANGLHKVS-EDG----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD-----I 192 (370)
Q Consensus 123 l~~d~~G~L~v~~~~~gi~~~~-~~g----~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~-----~ 192 (370)
+++. .+.+|+++. ..+.+++ .+. .+.+....++...++-..|+++|||+||++..+...-....+.. +
T Consensus 136 ~a~~-~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~ 213 (399)
T COG2133 136 ISEP-GGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKV 213 (399)
T ss_pred EEee-cCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCccccccce
Confidence 6653 566777663 3566666 211 23344444544467788899999999999976531111111111 1
Q ss_pred cccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc
Q 017520 193 LEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 240 (370)
Q Consensus 193 ~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~ 240 (370)
++. ....++..|+.+...+++..++.+|.|++++|....||+++.+.
T Consensus 214 ~r~-~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~ 260 (399)
T COG2133 214 LRI-DRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP 260 (399)
T ss_pred eee-ccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence 111 22345666777777788889999999999999855699999765
No 26
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=99.04 E-value=4.5e-08 Score=88.95 Aligned_cols=185 Identities=17% Similarity=0.188 Sum_probs=114.1
Q ss_pred ceEEcCCCcEEEEeCCC-------------ceEEEc-CCC--eEEEE-eecCCcccccccceEEcCC------CcEEEEe
Q 017520 122 GLTSTKEGHLIICDNAN-------------GLHKVS-EDG--VENFL-SYVNGSKLRFANDVVEASD------GSLYFTV 178 (370)
Q Consensus 122 gl~~d~~G~L~v~~~~~-------------gi~~~~-~~g--~~~~~-~~~~g~~~~~~~~l~~d~~------G~l~v~d 178 (370)
++.+|+.|+|||.|.+. .|+.+| .++ ++.+. +...-.+..+.+++++|.. +.+||+|
T Consensus 5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD 84 (287)
T PF03022_consen 5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD 84 (287)
T ss_dssp EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE
T ss_pred EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC
Confidence 78889999999988642 478888 555 34332 1111113468899999862 5799999
Q ss_pred CCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCC--------------------CccceEEcc---CCCEEEE
Q 017520 179 SSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY--------------------FANGVALSR---DEDYVVV 235 (370)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~--------------------~p~gi~~~~---dg~~l~v 235 (370)
.+ .++|.+||..+++...+..... ...|+++++ |+++||+
T Consensus 85 ~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf 147 (287)
T PF03022_consen 85 SG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYF 147 (287)
T ss_dssp TT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEE
T ss_pred CC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEE
Confidence 84 3588999988877766543311 135677765 8889999
Q ss_pred EeCCc--EEEEEeC---CCCCCc-------eeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHh
Q 017520 236 CESWK--CRKYWLK---GERKGK-------LETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA 303 (370)
Q Consensus 236 ~~~~~--l~~~~~~---~~~~~~-------~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (370)
.-..+ ++++..+ .+.... ++.+. ..++..++++.|++|++|.+....
T Consensus 148 ~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~~~~-------------------- 206 (287)
T PF03022_consen 148 HPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTDVEQ-------------------- 206 (287)
T ss_dssp EETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEECCC--------------------
T ss_pred EeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEecCCC--------------------
Confidence 98766 7777532 221111 12222 233456899999999999998775
Q ss_pred CCccccccccCCCceEEEEECCCC-----cEEEEEeCCCCCccccceeEEEEC---CEEEEEeCC
Q 017520 304 YPKLFSQFITLGGGAHLIHVAEDG-----TIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISLT 360 (370)
Q Consensus 304 ~~~~~~~~~~~~~~g~v~~~~~~g-----~~~~~~~~~~g~~~~~~t~~~~~~---g~L~~gs~~ 360 (370)
..|.+.++++ +....++++.. ..++.++...+ |+||+-+-.
T Consensus 207 --------------~aI~~w~~~~~~~~~~~~~l~~d~~~--l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 207 --------------NAIGCWDPDGPYTPENFEILAQDPRT--LQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp --------------TEEEEEETTTSB-GCCEEEEEE-CC---GSSEEEEEE-T--TS-EEEEE-S
T ss_pred --------------CeEEEEeCCCCcCccchheeEEcCce--eeccceeeeccccCceEEEEECc
Confidence 4689999988 44445566552 34566666555 999998743
No 27
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=99.00 E-value=5.2e-08 Score=92.88 Aligned_cols=168 Identities=15% Similarity=0.199 Sum_probs=109.8
Q ss_pred ceEecCCCcCCCcceEEcCCCcEEEEec-CCeEEEEe--CCeEEEE------Ee--cCCCceeceEEcCC-------CcE
Q 017520 70 FIKVGEGSVNHPEDASMDKNGVIYTATR-DGWIKRLQ--DGTWVNW------KF--IDSQTLVGLTSTKE-------GHL 131 (370)
Q Consensus 70 ~~~~~~~~~~~P~~i~~d~~G~l~v~~~-~g~I~~~~--~g~~~~~------~~--~~~~p~~gl~~d~~-------G~L 131 (370)
.+++.++ |..|.+|++.+||++||+.. .|+|++++ ++..+.. .. ..+..+ ||+++|+ +.|
T Consensus 22 ~~~va~G-L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLl-glal~PdF~~~~~n~~l 99 (454)
T TIGR03606 22 KKVLLSG-LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLL-GLALHPDFMQEKGNPYV 99 (454)
T ss_pred EEEEECC-CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCcee-eEEECCCccccCCCcEE
Confidence 4566666 89999999999999999997 59999998 3332221 11 234467 9999865 358
Q ss_pred EEEeC----------CCceEEEc-C-C-C----eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCC-ccceec-c
Q 017520 132 IICDN----------ANGLHKVS-E-D-G----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP-HEYCLD-I 192 (370)
Q Consensus 132 ~v~~~----------~~gi~~~~-~-~-g----~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~-~~~~~~-~ 192 (370)
|++-. ...|.++. . + . .+.+....+....++-..|++++||.|||+........ .+.+.. .
T Consensus 100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~ 179 (454)
T TIGR03606 100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQ 179 (454)
T ss_pred EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcch
Confidence 99731 23577765 2 2 1 23333333333345667899999999999865421100 000000 0
Q ss_pred -------------cccCCCceEEEEeCCCC-----------eEEEEecCCCCccceEEccCCCEEEEEeCCc
Q 017520 193 -------------LEGKPHGQLLKYDPSSN-----------ITTLVADGFYFANGVALSRDEDYVVVCESWK 240 (370)
Q Consensus 193 -------------~~~~~~g~l~~~d~~t~-----------~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~ 240 (370)
-.....|.|+|+|+++. ..++++.++++|.|++++++|+ ||+++.+.
T Consensus 180 aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~Gp 250 (454)
T TIGR03606 180 AQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQGP 250 (454)
T ss_pred hccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecCC
Confidence 01134678999998843 2367788999999999999877 99998654
No 28
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.98 E-value=1.3e-07 Score=96.49 Aligned_cols=185 Identities=16% Similarity=0.241 Sum_probs=123.8
Q ss_pred cCCCcceEEcCCCcEEEEecCCeEEEEe-CCeEEEEEecC-CC---ceeceEEcC-CCcEEEEeCC-CceEEEc---C-C
Q 017520 78 VNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNWKFID-SQ---TLVGLTSTK-EGHLIICDNA-NGLHKVS---E-D 146 (370)
Q Consensus 78 ~~~P~~i~~d~~G~l~v~~~~g~I~~~~-~g~~~~~~~~~-~~---p~~gl~~d~-~G~L~v~~~~-~gi~~~~---~-~ 146 (370)
+..|..++..+||.||||+.+ -|.|+. +|.+..+..-. .+ -+ -||++| ||.|||.+.. +.|+++. + +
T Consensus 364 L~aPvala~a~DGSl~VGDfN-yIRRI~~dg~v~tIl~L~~t~~sh~Y-y~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d 441 (1899)
T KOG4659|consen 364 LFAPVALAYAPDGSLIVGDFN-YIRRISQDGQVSTILTLGLTDTSHSY-YIAVSPVDGTLYVSDPLSKQVWRVSSLEPQD 441 (1899)
T ss_pred eeceeeEEEcCCCcEEEccch-heeeecCCCceEEEEEecCCCcccee-EEEecCcCceEEecCCCcceEEEeccCCccc
Confidence 557888999999999999976 499988 88877665433 22 24 588887 8999999877 5788886 1 1
Q ss_pred --C-eEEEEeec----------------CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCC
Q 017520 147 --G-VENFLSYV----------------NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 207 (370)
Q Consensus 147 --g-~~~~~~~~----------------~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 207 (370)
+ .++++..- ....+.+|.++++|.+|.+||+|+. .|.++|..
T Consensus 442 ~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t-------------------~IR~iD~~ 502 (1899)
T KOG4659|consen 442 SRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT-------------------RIRVIDTT 502 (1899)
T ss_pred cccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc-------------------EEEEeccC
Confidence 1 45554210 1134678999999999999999874 34445543
Q ss_pred CCeEEEEec--------------------CCCCccceEEccCCCEEEEEeCCcEEEEEeCCCC---CCce-eeeccC---
Q 017520 208 SNITTLVAD--------------------GFYFANGVALSRDEDYVVVCESWKCRKYWLKGER---KGKL-ETFAEN--- 260 (370)
Q Consensus 208 t~~~~~~~~--------------------~~~~p~gi~~~~dg~~l~v~~~~~l~~~~~~~~~---~~~~-~~~~~~--- 260 (370)
+.+..+.. .+..|..++++|=.+.+||-+++-|++++..... .|.. .+...+
T Consensus 503 -giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~ 581 (1899)
T KOG4659|consen 503 -GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRVRIILGRPTHCDLANATS 581 (1899)
T ss_pred -ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecceEEEEccCccEEEEcCCccccccCCCch
Confidence 33333211 2456889999996667999998667777654320 0100 000000
Q ss_pred ---------CCCCCCceeECCCCCEEEEEecCc
Q 017520 261 ---------LPGAPDNINLAPDGTFWIAIIKLD 284 (370)
Q Consensus 261 ---------~~g~p~~i~~d~~G~lwv~~~~~~ 284 (370)
.--.+..|++..+|-+||+...++
T Consensus 582 ~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~r 614 (1899)
T KOG4659|consen 582 SASKLADHRTLLIQRDIAVGTDGALYVAESDGR 614 (1899)
T ss_pred hhhhhhhhhhhhhhhceeecCCceEEEEeccch
Confidence 001467899999999999987763
No 29
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=1.2e-06 Score=83.22 Aligned_cols=184 Identities=16% Similarity=0.172 Sum_probs=125.6
Q ss_pred CCcceEEcCCC-cEEEEecC-CeEEEEe--CCeEEEEEecC-CCceeceEEcCCCc-EEEEeCC-CceEEEc-CCCeEEE
Q 017520 80 HPEDASMDKNG-VIYTATRD-GWIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDGVENF 151 (370)
Q Consensus 80 ~P~~i~~d~~G-~l~v~~~~-g~I~~~~--~g~~~~~~~~~-~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~~g~~~~ 151 (370)
.|..++++++| .+|+.... ..+..++ ....+.+...+ ..|. +++++++|+ +|+.+.. +.+..++ ..- +..
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~-~i~v~~~~~~vyv~~~~~~~v~vid~~~~-~~~ 109 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPA-GVAVNPAGNKVYVTTGDSNTVSVIDTATN-TVL 109 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCcccc-ceeeCCCCCeEEEecCCCCeEEEEcCccc-cee
Confidence 89999999988 89998833 3455555 22333333333 6788 999998886 9998866 5677777 322 111
Q ss_pred EeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCC
Q 017520 152 LSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 230 (370)
Q Consensus 152 ~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg 230 (370)
.....| ..|..++++++| .+|+++... .++.+.++|..++...........|.+++++++|
T Consensus 110 ~~~~vG---~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g 171 (381)
T COG3391 110 GSIPVG---LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDG 171 (381)
T ss_pred eEeeec---cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCC
Confidence 111122 278899999988 799998731 3578999999888776554444468999999999
Q ss_pred CEEEEEeCCc--EEEEEeCCCCCCc-eeeeccCCCCCCCceeECCCCC-EEEEEecC
Q 017520 231 DYVVVCESWK--CRKYWLKGERKGK-LETFAENLPGAPDNINLAPDGT-FWIAIIKL 283 (370)
Q Consensus 231 ~~l~v~~~~~--l~~~~~~~~~~~~-~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~ 283 (370)
+.+|+++... |..++.++..... .....-.....|.++.++++|+ +|+.....
T Consensus 172 ~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 172 NKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred CeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 9999999544 9999866542221 0000012334689999999997 88887553
No 30
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.94 E-value=4.8e-08 Score=92.41 Aligned_cols=144 Identities=16% Similarity=0.186 Sum_probs=98.4
Q ss_pred EEEEEec--CCCceeceEEcCCCcEEEEeCC-------------CceEEEc-C--CC-e---EEEEeecCCcccccccce
Q 017520 109 WVNWKFI--DSQTLVGLTSTKEGHLIICDNA-------------NGLHKVS-E--DG-V---ENFLSYVNGSKLRFANDV 166 (370)
Q Consensus 109 ~~~~~~~--~~~p~~gl~~d~~G~L~v~~~~-------------~gi~~~~-~--~g-~---~~~~~~~~g~~~~~~~~l 166 (370)
++.++.. ...|. +|++|++|+|||++.. ..|+++. . +| . +.++. + +..+++|
T Consensus 4 ~~l~A~~p~~~~P~-~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~---~--l~~p~Gi 77 (367)
T TIGR02604 4 VTLFAAEPLLRNPI-AVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE---E--LSMVTGL 77 (367)
T ss_pred EEEEECCCccCCCc-eeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec---C--CCCccce
Confidence 4455543 56789 9999999999999741 2577776 3 45 2 33332 2 3578999
Q ss_pred EEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEE-eCCC-----CeEEEEecCC--------CCccceEEccCCCE
Q 017520 167 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY-DPSS-----NITTLVADGF--------YFANGVALSRDEDY 232 (370)
Q Consensus 167 ~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~t-----~~~~~~~~~~--------~~p~gi~~~~dg~~ 232 (370)
++.++| |||++. ..|+++ |.+. ++.+++.+++ ..++++++.+||+
T Consensus 78 ~~~~~G-lyV~~~-------------------~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~- 136 (367)
T TIGR02604 78 AVAVGG-VYVATP-------------------PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW- 136 (367)
T ss_pred eEecCC-EEEeCC-------------------CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-
Confidence 999999 999954 357777 3321 1344444332 3478999999997
Q ss_pred EEEEeCC--------------------c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520 233 VVVCESW--------------------K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 233 l~v~~~~--------------------~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~ 283 (370)
||++... + |+||++++. ..+.+... ...|.++++|++|++|++.+..
T Consensus 137 LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~---~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 137 LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG---KLRVVAHG-FQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EEEecccCCCceeccCCCccCcccccCceEEEEecCCC---eEEEEecC-cCCCccceECCCCCEEEEccCC
Confidence 8986541 3 889988764 34555433 2358899999999999997743
No 31
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.89 E-value=3.6e-06 Score=78.10 Aligned_cols=244 Identities=12% Similarity=0.038 Sum_probs=130.8
Q ss_pred CcEEEEecC-----CeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeC---------C-CceEEEc-CCC--e
Q 017520 90 GVIYTATRD-----GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDN---------A-NGLHKVS-EDG--V 148 (370)
Q Consensus 90 G~l~v~~~~-----g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~---------~-~gi~~~~-~~g--~ 148 (370)
.++|+.+.. ++|+.+| ++++......+.+|. ++ +++||+ ||++.. . ..|..+| .++ .
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 357777743 7899999 666665566778899 86 999984 999987 4 3466666 555 3
Q ss_pred EEEEeecCC---cccccccceEEcCCCc-EEEEeCCCC-----CCC--ccce---------ecccccCCCceEEEEeCC-
Q 017520 149 ENFLSYVNG---SKLRFANDVVEASDGS-LYFTVSSSK-----YLP--HEYC---------LDILEGKPHGQLLKYDPS- 207 (370)
Q Consensus 149 ~~~~~~~~g---~~~~~~~~l~~d~~G~-l~v~d~~~~-----~~~--~~~~---------~~~~~~~~~g~l~~~d~~- 207 (370)
..+... +. .-...++.+++++||+ +||.+.+-. .+. +... +.+...+....+.+.|..
T Consensus 91 ~~i~~p-~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~ 169 (352)
T TIGR02658 91 ADIELP-EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSL 169 (352)
T ss_pred eEEccC-CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCce
Confidence 333211 11 0134667899999995 898864300 000 0000 000011111112222211
Q ss_pred -------CCeEEE----EecC-----CCCccceEEcc-CCCEEEEEeCCcEEEEEeCCCCCCceeee---ccC--CCC-C
Q 017520 208 -------SNITTL----VADG-----FYFANGVALSR-DEDYVVVCESWKCRKYWLKGERKGKLETF---AEN--LPG-A 264 (370)
Q Consensus 208 -------t~~~~~----~~~~-----~~~p~gi~~~~-dg~~l~v~~~~~l~~~~~~~~~~~~~~~~---~~~--~~g-~ 264 (370)
+++... ++.. +..| .+.+ ||+.+|++..+.|+.+|+.+........+ ... ..+ .
T Consensus 170 ~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr 246 (352)
T TIGR02658 170 AKVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR 246 (352)
T ss_pred EEEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccC
Confidence 111110 1111 0122 3344 88988898885599999765432222221 111 001 3
Q ss_pred CCc---eeECCCC-CEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCC
Q 017520 265 PDN---INLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQ 339 (370)
Q Consensus 265 p~~---i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~ 339 (370)
|.+ ++++++| ++||...++.- ..+ ..+...|..+|. .++++..+.. |.
T Consensus 247 P~g~q~ia~~~dg~~lyV~~~~~~~--------------------~th-----k~~~~~V~ViD~~t~kvi~~i~v--G~ 299 (352)
T TIGR02658 247 PGGWQQVAYHRARDRIYLLADQRAK--------------------WTH-----KTASRFLFVVDAKTGKRLRKIEL--GH 299 (352)
T ss_pred CCcceeEEEcCCCCEEEEEecCCcc--------------------ccc-----cCCCCEEEEEECCCCeEEEEEeC--CC
Confidence 555 8999887 69997765410 000 112235777885 5677776654 32
Q ss_pred ccccceeEEE-E-CC-EEEEEeCCCCeEEEEeC
Q 017520 340 LMSFVTSGLQ-V-DN-HLYVISLTSNFIGKVQL 369 (370)
Q Consensus 340 ~~~~~t~~~~-~-~g-~L~~gs~~~~~i~~~~~ 369 (370)
.+..+.. . +. .||..+-.++.|.+++.
T Consensus 300 ---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 300 ---EIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred ---ceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 2333332 2 35 68888877888888874
No 32
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=1.2e-06 Score=83.28 Aligned_cols=177 Identities=17% Similarity=0.185 Sum_probs=123.5
Q ss_pred CCCcceEEcCCCc-EEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCC-cEEEEeCC---CceEEEcC-CC-e
Q 017520 79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNA---NGLHKVSE-DG-V 148 (370)
Q Consensus 79 ~~P~~i~~d~~G~-l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~~~~---~gi~~~~~-~g-~ 148 (370)
..|.++++.++|. +|+.+ ..+.|..++ ..+.......+..|. +++++++| .+||++.. .-+..++. ++ .
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-GLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-eEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 6799999998775 99988 447899998 334444444455899 99999988 79999983 45777774 34 2
Q ss_pred EEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE-----EecCCCCcc
Q 017520 149 ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-----VADGFYFAN 222 (370)
Q Consensus 149 ~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~-----~~~~~~~p~ 222 (370)
... ...|. .|.+++++++|+ +|+++. .++.|..+|.++..+.. .......|.
T Consensus 153 ~~~--~~vG~---~P~~~a~~p~g~~vyv~~~-----------------~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~ 210 (381)
T COG3391 153 TAT--IPVGN---TPTGVAVDPDGNKVYVTNS-----------------DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPA 210 (381)
T ss_pred EEE--EecCC---CcceEEECCCCCeEEEEec-----------------CCCeEEEEeCCCcceeccccccccccCCCCc
Confidence 222 22232 457899999996 999984 45789999987665553 133456899
Q ss_pred ceEEccCCCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520 223 GVALSRDEDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 280 (370)
Q Consensus 223 gi~~~~dg~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~ 280 (370)
+++++++|+.+|+++..+ +.+++............. ... .|.++..+++|..+...
T Consensus 211 ~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 211 GIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred eEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEE
Confidence 999999999999999874 777776543211111111 122 58899999999755444
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.76 E-value=8.2e-06 Score=79.67 Aligned_cols=186 Identities=16% Similarity=0.206 Sum_probs=126.9
Q ss_pred CCcCCCcceEEcCCCcEEE-EecCCeEEEEe--CC-eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEE-Ec-CCC--
Q 017520 76 GSVNHPEDASMDKNGVIYT-ATRDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHK-VS-EDG-- 147 (370)
Q Consensus 76 ~~~~~P~~i~~d~~G~l~v-~~~~g~I~~~~--~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~-~~-~~g-- 147 (370)
|.+..-.++++.+||.+.+ |..||+|..|| .| =+.+|........ ++.+...|+..++..-.|-++ +| ...
T Consensus 348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 4455667888999997664 55899999999 33 3667766666677 999999999888766656444 55 333
Q ss_pred eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-cceEE
Q 017520 148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVAL 226 (370)
Q Consensus 148 ~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-~gi~~ 226 (370)
++.+..+. + .....+++|+.|.|.++-.. ..-.|+.++.+||+..-+..+.-.| .++++
T Consensus 427 fRTft~P~---p-~QfscvavD~sGelV~AG~~----------------d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f 486 (893)
T KOG0291|consen 427 FRTFTSPE---P-IQFSCVAVDPSGELVCAGAQ----------------DSFEIFVWSVQTGQLLDILSGHEGPVSGLSF 486 (893)
T ss_pred eeeecCCC---c-eeeeEEEEcCCCCEEEeecc----------------ceEEEEEEEeecCeeeehhcCCCCcceeeEE
Confidence 66664321 1 24567899999998887442 2346899999999887666666666 57899
Q ss_pred ccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC-CEEEEEecCch
Q 017520 227 SRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDA 285 (370)
Q Consensus 227 ~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~~~ 285 (370)
+++++.|+-+.... |.+|++=+. .++.+.+. .....-++.+.++| .+-|++..+..
T Consensus 487 ~~~~~~LaS~SWDkTVRiW~if~s-~~~vEtl~--i~sdvl~vsfrPdG~elaVaTldgqI 544 (893)
T KOG0291|consen 487 SPDGSLLASGSWDKTVRIWDIFSS-SGTVETLE--IRSDVLAVSFRPDGKELAVATLDGQI 544 (893)
T ss_pred ccccCeEEeccccceEEEEEeecc-CceeeeEe--eccceeEEEEcCCCCeEEEEEecceE
Confidence 99999666656556 887776432 23344432 11123456778888 58888887643
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.72 E-value=2.4e-05 Score=69.49 Aligned_cols=174 Identities=17% Similarity=0.213 Sum_probs=112.1
Q ss_pred cceEEcCCC-cEEEEecCCeEEEEe--CC-eEEEEEecCCCceeceEEcCCCcEEEEeC-CCceEEEc-CCC--eEEEEe
Q 017520 82 EDASMDKNG-VIYTATRDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDN-ANGLHKVS-EDG--VENFLS 153 (370)
Q Consensus 82 ~~i~~d~~G-~l~v~~~~g~I~~~~--~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~~~-~~gi~~~~-~~g--~~~~~~ 153 (370)
..+.+.+++ .+++++.+|.|..++ ++ ....+......+. ++.+.+++.++++.. .+.+..++ .++ ...+.
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~- 132 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR- 132 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-
Confidence 367777777 677777899999999 33 3444443444566 899998888877766 45567777 444 22221
Q ss_pred ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-CCCCccceEEccCCCE
Q 017520 154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDY 232 (370)
Q Consensus 154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~~~p~gi~~~~dg~~ 232 (370)
. ....+..+.+++++.++++.. .++.|..||..+++...... .......++++++++.
T Consensus 133 ---~-~~~~i~~~~~~~~~~~l~~~~-----------------~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 191 (289)
T cd00200 133 ---G-HTDWVNSVAFSPDGTFVASSS-----------------QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEK 191 (289)
T ss_pred ---c-CCCcEEEEEEcCcCCEEEEEc-----------------CCCcEEEEEccccccceeEecCccccceEEECCCcCE
Confidence 1 113577889999887766643 24678888887554432222 2235678999999987
Q ss_pred EEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520 233 VVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 281 (370)
Q Consensus 233 l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~ 281 (370)
++++...+ |..|++...+. ...+. ........+.+++++.++++..
T Consensus 192 l~~~~~~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 192 LLSSSSDGTIKLWDLSTGKC--LGTLR-GHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EEEecCCCcEEEEECCCCce--ecchh-hcCCceEEEEEcCCCcEEEEEc
Confidence 88888766 89998764311 11221 1223456688888887777765
No 35
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.71 E-value=2.7e-06 Score=77.77 Aligned_cols=206 Identities=22% Similarity=0.276 Sum_probs=122.8
Q ss_pred eEecCCCcCCCcceEEcCCC-cEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC
Q 017520 71 IKVGEGSVNHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG 147 (370)
Q Consensus 71 ~~~~~~~~~~P~~i~~d~~G-~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g 147 (370)
..++...+.+||.+.+|+.| --|++-.+|++.+|. +..+..+......++.+.+-++ .+
T Consensus 46 ~l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~---~~--------------- 107 (376)
T KOG1520|consen 46 KLIPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDP---GS--------------- 107 (376)
T ss_pred ccccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccccccCCC---cc---------------
Confidence 34555557899999999855 578888889998887 2333333322111110000000 00
Q ss_pred eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-----CCCCc
Q 017520 148 VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----GFYFA 221 (370)
Q Consensus 148 ~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-----~~~~p 221 (370)
.+ ....-| .|-+|+++..| ++||+|.- -+|+.++++++..+.+.+ .+.+.
T Consensus 108 ~~--~e~~CG----RPLGl~f~~~ggdL~VaDAY------------------lGL~~V~p~g~~a~~l~~~~~G~~~kf~ 163 (376)
T KOG1520|consen 108 FE--TEPLCG----RPLGIRFDKKGGDLYVADAY------------------LGLLKVGPEGGLAELLADEAEGKPFKFL 163 (376)
T ss_pred ee--cccccC----CcceEEeccCCCeEEEEecc------------------eeeEEECCCCCcceeccccccCeeeeec
Confidence 11 011233 34578999877 99999863 479999999887665543 35678
Q ss_pred cceEEccCCCEEEEEeCCc-------------------EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520 222 NGVALSRDEDYVVVCESWK-------------------CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 282 (370)
Q Consensus 222 ~gi~~~~dg~~l~v~~~~~-------------------l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 282 (370)
|++.++++|. +|++++.. +++||..+ ...+++.+++. +|+|++.++|+.+.+.+..
T Consensus 164 N~ldI~~~g~-vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~t---K~~~VLld~L~-F~NGlaLS~d~sfvl~~Et 238 (376)
T KOG1520|consen 164 NDLDIDPEGV-VYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPST---KVTKVLLDGLY-FPNGLALSPDGSFVLVAET 238 (376)
T ss_pred CceeEcCCCe-EEEeccccccchhheEEeeecCCCccceEEecCcc---cchhhhhhccc-ccccccCCCCCCEEEEEee
Confidence 9999999665 99988533 44555332 23444554443 6999999999987777655
Q ss_pred CchhHHHhhhcchhH--HHHHHh-CCccccccccCCCceEEEEECCCCcEEEEE
Q 017520 283 LDARRMKILNSSKLI--KHVLAA-YPKLFSQFITLGGGAHLIHVAEDGTIIRNL 333 (370)
Q Consensus 283 ~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~ 333 (370)
....+..+..+.|.. ..+.+. ||..-.. ++.+.+|+...-.
T Consensus 239 ~~~ri~rywi~g~k~gt~EvFa~~LPG~PDN----------IR~~~~G~fWVal 282 (376)
T KOG1520|consen 239 TTARIKRYWIKGPKAGTSEVFAEGLPGYPDN----------IRRDSTGHFWVAL 282 (376)
T ss_pred ccceeeeeEecCCccCchhhHhhcCCCCCcc----------eeECCCCCEEEEE
Confidence 433333443333333 233333 6665544 5666666554433
No 36
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.70 E-value=5.8e-05 Score=71.74 Aligned_cols=139 Identities=16% Similarity=0.165 Sum_probs=80.5
Q ss_pred eEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecCCcc
Q 017520 84 ASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSK 159 (370)
Q Consensus 84 i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~ 159 (370)
.+++ ++.+|+++.+|.|+.++ +|+...-....+....+.+++ ++.+|+++..+.++.++ .+| ...-.. ..+..
T Consensus 61 p~v~-~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~-~~~~~ 137 (377)
T TIGR03300 61 PAVA-GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKELWRAK-LSSEV 137 (377)
T ss_pred eEEE-CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEeeeec-cCcee
Confidence 3554 67999999999999999 787543333222222145554 67899988777799999 678 433222 12211
Q ss_pred cccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCC------ccceEEccCCCEE
Q 017520 160 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF------ANGVALSRDEDYV 233 (370)
Q Consensus 160 ~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~------p~gi~~~~dg~~l 233 (370)
.. ..++ .++.+|+... .+.|+.+|.++++.......... .....+. + +.+
T Consensus 138 ~~---~p~v-~~~~v~v~~~------------------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v 193 (377)
T TIGR03300 138 LS---PPLV-ANGLVVVRTN------------------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGV 193 (377)
T ss_pred ec---CCEE-ECCEEEEECC------------------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEE
Confidence 11 1122 2567877643 47899999887765332211110 0111222 3 347
Q ss_pred EEEeCCc-EEEEEeCCC
Q 017520 234 VVCESWK-CRKYWLKGE 249 (370)
Q Consensus 234 ~v~~~~~-l~~~~~~~~ 249 (370)
|+....+ ++.+|+..+
T Consensus 194 ~~~~~~g~v~ald~~tG 210 (377)
T TIGR03300 194 LVGFAGGKLVALDLQTG 210 (377)
T ss_pred EEECCCCEEEEEEccCC
Confidence 7766655 888887543
No 37
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.62 E-value=1.6e-05 Score=70.28 Aligned_cols=190 Identities=12% Similarity=0.154 Sum_probs=101.1
Q ss_pred CCcCCCcceEEcCC-CcEEEEe-cCCeEEEEe-CCeEE-EEEec-CCCceeceEEcCCCcEEEEeCC-CceEEEc--CCC
Q 017520 76 GSVNHPEDASMDKN-GVIYTAT-RDGWIKRLQ-DGTWV-NWKFI-DSQTLVGLTSTKEGHLIICDNA-NGLHKVS--EDG 147 (370)
Q Consensus 76 ~~~~~P~~i~~d~~-G~l~v~~-~~g~I~~~~-~g~~~-~~~~~-~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~--~~g 147 (370)
|....+.+|+++++ +.||+.+ ..+.|+.++ +|++. .+... .+.+- ||++-.+|.+.+.+.. +.++.++ .++
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~E-gI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYE-GITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEE-EEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCce-eEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 44557899999975 6799655 788999999 88754 33222 35677 9999877877777754 4576666 222
Q ss_pred --e--E---EEEeecCCcccccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeC--CCCeEEEEe--
Q 017520 148 --V--E---NFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP--SSNITTLVA-- 215 (370)
Q Consensus 148 --~--~---~~~~~~~g~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~--~t~~~~~~~-- 215 (370)
+ . .+.-...........+|+.|+. +++|++... ....|+.++. .........
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~----------------~P~~l~~~~~~~~~~~~~~~~~~ 161 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER----------------KPKRLYEVNGFPGGFDLFVSDDQ 161 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES----------------SSEEEEEEESTT-SS--EEEE-H
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC----------------CChhhEEEccccCccceeecccc
Confidence 1 1 1111112122235678999987 478887432 2245777764 212222211
Q ss_pred ------cCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCC------CCCCCceeECCCCCEEEEEe
Q 017520 216 ------DGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENL------PGAPDNINLAPDGTFWIAII 281 (370)
Q Consensus 216 ------~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~------~g~p~~i~~d~~G~lwv~~~ 281 (370)
.....+.++++++..+.+|+-.... |..+|.+|...+.. .+.... -..|.||++|++|++||..-
T Consensus 162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~-~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE 240 (248)
T PF06977_consen 162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSL-SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE 240 (248)
T ss_dssp HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEE-E-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred ccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEE-EeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence 1234578999999877788776655 88999766422111 111110 12489999999999999986
Q ss_pred cC
Q 017520 282 KL 283 (370)
Q Consensus 282 ~~ 283 (370)
.+
T Consensus 241 pN 242 (248)
T PF06977_consen 241 PN 242 (248)
T ss_dssp TT
T ss_pred Cc
Confidence 54
No 38
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.60 E-value=4.8e-06 Score=81.94 Aligned_cols=166 Identities=16% Similarity=0.173 Sum_probs=111.6
Q ss_pred cEEEEecCCeEEEEe-CCe------EEEEEe-cCCCceeceEEc-CCCcEEEEeCCC-ceEEEcCCC--eEEEEeecCCc
Q 017520 91 VIYTATRDGWIKRLQ-DGT------WVNWKF-IDSQTLVGLTST-KEGHLIICDNAN-GLHKVSEDG--VENFLSYVNGS 158 (370)
Q Consensus 91 ~l~v~~~~g~I~~~~-~g~------~~~~~~-~~~~p~~gl~~d-~~G~L~v~~~~~-gi~~~~~~g--~~~~~~~~~g~ 158 (370)
.|.++ ..++|.++. +|. .+.+.. +..-+. ||.|| .+..+|+.|..+ .|-+-.-.| -+.+++ .
T Consensus 992 ~LL~a-qg~~I~~lplng~~~~K~~ak~~l~~p~~IiV-GidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n----~ 1065 (1289)
T KOG1214|consen 992 FLLYA-QGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIV-GIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVN----S 1065 (1289)
T ss_pred eEEEe-ccceEEEeecCcchhchhhhhceEecccceee-eeecccccceEEEeecCCCccccccccCCCCceeec----c
Confidence 34444 456788877 442 222232 334466 99999 455789888653 455555334 444433 2
Q ss_pred ccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEe
Q 017520 159 KLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE 237 (370)
Q Consensus 159 ~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~ 237 (370)
.+.+|.+|++|.-+ ++|.+|+.- ..-.+..+|... +...+.+++.+|.+|++|+-+..|||++
T Consensus 1066 ~L~SPEGiAVDh~~Rn~ywtDS~l---------------D~IevA~LdG~~-rkvLf~tdLVNPR~iv~D~~rgnLYwtD 1129 (1289)
T KOG1214|consen 1066 GLISPEGIAVDHIRRNMYWTDSVL---------------DKIEVALLDGSE-RKVLFYTDLVNPRAIVVDPIRGNLYWTD 1129 (1289)
T ss_pred cCCCccceeeeeccceeeeecccc---------------chhheeecCCce-eeEEEeecccCcceEEeecccCceeecc
Confidence 24689999999866 799998741 122455666542 2233457899999999999888899999
Q ss_pred CCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC--EEEEEe
Q 017520 238 SWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT--FWIAII 281 (370)
Q Consensus 238 ~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~--lwv~~~ 281 (370)
.++ |-+.+++|. +.++++...-++|+|+.+|+.-. -||-..
T Consensus 1130 WnRenPkIets~mDG~---NrRilin~DigLPNGLtfdpfs~~LCWvDAG 1176 (1289)
T KOG1214|consen 1130 WNRENPKIETSSMDGE---NRRILINTDIGLPNGLTFDPFSKLLCWVDAG 1176 (1289)
T ss_pred ccccCCcceeeccCCc---cceEEeecccCCCCCceeCcccceeeEEecC
Confidence 987 889999885 56677766678999999999775 455543
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.58 E-value=0.00016 Score=64.13 Aligned_cols=178 Identities=17% Similarity=0.224 Sum_probs=107.4
Q ss_pred CCcceEEcCCC-cEEEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCc-EEEEeCCCceEEEc-CCC--eEEE
Q 017520 80 HPEDASMDKNG-VIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG--VENF 151 (370)
Q Consensus 80 ~P~~i~~d~~G-~l~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g--~~~~ 151 (370)
...++.++++| .+++++.+|.|..++ +++. ........... .+.+.++++ ++++...+.+..++ .++ ...+
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~ 89 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVR-DVAASADGTYLASGSSDKTIRLWDLETGECVRTL 89 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCccee-EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE
Confidence 45677888875 455666789999988 4432 22222333344 788888885 55555445566666 443 3333
Q ss_pred EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-CCCCccceEEccCC
Q 017520 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDE 230 (370)
Q Consensus 152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~~~p~gi~~~~dg 230 (370)
... ...+..+.+.++++++++.. .++.+..||..+++...... .......+++++++
T Consensus 90 ~~~-----~~~i~~~~~~~~~~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 147 (289)
T cd00200 90 TGH-----TSYVSSVAFSPDGRILSSSS-----------------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG 147 (289)
T ss_pred ecc-----CCcEEEEEEcCCCCEEEEec-----------------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC
Confidence 211 12567788888888777753 24788999987555443333 22346788999998
Q ss_pred CEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC-CEEEEEecC
Q 017520 231 DYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKL 283 (370)
Q Consensus 231 ~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~ 283 (370)
+.++.+...+ |..|++...+. ...+. ........+.++++| .++++...+
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~ 199 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKC--VATLT-GHTGEVNSVAFSPDGEKLLSSSSDG 199 (289)
T ss_pred CEEEEEcCCCcEEEEEcccccc--ceeEe-cCccccceEEECCCcCEEEEecCCC
Confidence 8666655355 99999764321 12221 222345678888888 466655443
No 40
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.57 E-value=7e-06 Score=77.47 Aligned_cols=152 Identities=14% Similarity=0.166 Sum_probs=93.3
Q ss_pred CcceEEcCCC-cEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC-CceEEEc-CCC--eEEEE
Q 017520 81 PEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG--VENFL 152 (370)
Q Consensus 81 P~~i~~d~~G-~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~~g--~~~~~ 152 (370)
+..+++.+|| ++|+.+.+|.|.++| +++...-...+..|. ++++++||+ +|+++.. ..+..+| ++. ++.+.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 3456778887 599999999999999 666555556677899 999999997 6777654 5677788 554 44432
Q ss_pred ee-cCC-cccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe--EEEEecCCCCccceEEcc
Q 017520 153 SY-VNG-SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLVADGFYFANGVALSR 228 (370)
Q Consensus 153 ~~-~~g-~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~--~~~~~~~~~~p~gi~~~~ 228 (370)
.. ... .+...+.++..++....|+..- ...+.++.+|..... .........+|....+++
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l----------------kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp 181 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASPGRPEFVVNL----------------KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP 181 (369)
T ss_dssp --EE-TTTS---EEEEEE-SSSSEEEEEE----------------TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred cccccccccCCCceeEEecCCCCEEEEEE----------------ccCCeEEEEEeccccccceeeecccccccccccCc
Confidence 21 111 1222345666677777666532 145789988865332 222334456889999999
Q ss_pred CCCEEEEEeCCc--EEEEEeCCC
Q 017520 229 DEDYVVVCESWK--CRKYWLKGE 249 (370)
Q Consensus 229 dg~~l~v~~~~~--l~~~~~~~~ 249 (370)
+++.++++.... |..+|.+..
T Consensus 182 dgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 182 DGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp TSSEEEEEEGGGTEEEEEETTTT
T ss_pred ccceeeecccccceeEEEeeccc
Confidence 999888876655 888886543
No 41
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.54 E-value=7.3e-05 Score=70.61 Aligned_cols=167 Identities=14% Similarity=0.161 Sum_probs=96.3
Q ss_pred cEE-EEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCCceEEEc-CCC--eEEEEeecCCccccc
Q 017520 91 VIY-TAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG--VENFLSYVNGSKLRF 162 (370)
Q Consensus 91 ~l~-v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g--~~~~~~~~~g~~~~~ 162 (370)
+|+ +.. .+|.|..+| +.+........+.++.++++++||+ +|+++..+.+..+| .++ +..+. .| ..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~---~G---~~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK---VG---GN 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----S---SE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe---cC---CC
Confidence 444 555 678899999 4554443444455542688899996 89988666788888 555 33332 23 35
Q ss_pred ccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC--------CCccceEEccCCCEE
Q 017520 163 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--------YFANGVALSRDEDYV 233 (370)
Q Consensus 163 ~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~--------~~p~gi~~~~dg~~l 233 (370)
+.++++++||+ +|+++. ..+.+..+|.++.+........ ....+|..++.+..+
T Consensus 80 ~~~i~~s~DG~~~~v~n~-----------------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f 142 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANY-----------------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF 142 (369)
T ss_dssp EEEEEE--TTTEEEEEEE-----------------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE
T ss_pred cceEEEcCCCCEEEEEec-----------------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE
Confidence 78899999996 666753 3468889998776543322111 123467777888766
Q ss_pred EEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520 234 VVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 282 (370)
Q Consensus 234 ~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 282 (370)
+++.... |+.+|....+.-.. ... ....+|.+..+|++|+++++...
T Consensus 143 Vv~lkd~~~I~vVdy~d~~~~~~-~~i-~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 143 VVNLKDTGEIWVVDYSDPKNLKV-TTI-KVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp EEEETTTTEEEEEETTTSSCEEE-EEE-E--TTEEEEEE-TTSSEEEEEEG
T ss_pred EEEEccCCeEEEEEeccccccce-eee-cccccccccccCcccceeeeccc
Confidence 6665443 99888765422111 122 23346889999999987766543
No 42
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.53 E-value=9.2e-05 Score=72.02 Aligned_cols=199 Identities=13% Similarity=0.115 Sum_probs=117.7
Q ss_pred ceEEcCCCc-EE-EEecC--CeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCC---ceEEEc-CCC-eEE
Q 017520 83 DASMDKNGV-IY-TATRD--GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VEN 150 (370)
Q Consensus 83 ~i~~d~~G~-l~-v~~~~--g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~---gi~~~~-~~g-~~~ 150 (370)
+..+++||. |+ +...+ ..|+.++ +|+.+.+....+... ..++++||+ |+++.... .|+.++ .++ .+.
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~ 300 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR 300 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE
Confidence 357788885 43 33333 3688888 566555543333334 678999997 65543222 488888 555 554
Q ss_pred EEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccC
Q 017520 151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD 229 (370)
Q Consensus 151 ~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~d 229 (370)
+... . ......++++||+ |+++... .....||++|.++++.+.+........+.++++|
T Consensus 301 lt~~-~----~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpD 360 (448)
T PRK04792 301 ITRH-R----AIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPD 360 (448)
T ss_pred CccC-C----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCCcCeeECCC
Confidence 4321 1 1234568889985 6665321 1235799999988877665433233445789999
Q ss_pred CCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhC
Q 017520 230 EDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAY 304 (370)
Q Consensus 230 g~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (370)
|+.++++...+ |+++++++.. ...+... .......+++||+ ++.+...+
T Consensus 361 G~~l~~~~~~~g~~~I~~~dl~~g~---~~~lt~~--~~d~~ps~spdG~~I~~~~~~~--------------------- 414 (448)
T PRK04792 361 GRSMIMVNRTNGKFNIARQDLETGA---MQVLTST--RLDESPSVAPNGTMVIYSTTYQ--------------------- 414 (448)
T ss_pred CCEEEEEEecCCceEEEEEECCCCC---eEEccCC--CCCCCceECCCCCEEEEEEecC---------------------
Confidence 99988876533 8888877642 2222211 1122346788886 44443322
Q ss_pred CccccccccCCCceEEEEECCCCcEEEEEeCCCCC
Q 017520 305 PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ 339 (370)
Q Consensus 305 ~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~ 339 (370)
....++.++.+|+..+.+..+.|.
T Consensus 415 -----------g~~~l~~~~~~G~~~~~l~~~~g~ 438 (448)
T PRK04792 415 -----------GKQVLAAVSIDGRFKARLPAGQGE 438 (448)
T ss_pred -----------CceEEEEEECCCCceEECcCCCCC
Confidence 123467778888888877655443
No 43
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.52 E-value=6.3e-05 Score=72.02 Aligned_cols=122 Identities=15% Similarity=0.165 Sum_probs=72.6
Q ss_pred CceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccC-CC-CCCCceeECCCC
Q 017520 198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAEN-LP-GAPDNINLAPDG 274 (370)
Q Consensus 198 ~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~-~~-g~p~~i~~d~~G 274 (370)
.+.++.+|..+++.... ..+..+..+++ +++.+|+....+ ++.++.++.+ ..+... .. .......+ .+|
T Consensus 265 ~g~l~ald~~tG~~~W~-~~~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~----~~W~~~~~~~~~~~sp~v-~~g 336 (394)
T PRK11138 265 NGNLVALDLRSGQIVWK-REYGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGV----ELWSQSDLLHRLLTAPVL-YNG 336 (394)
T ss_pred CCeEEEEECCCCCEEEe-ecCCCccCcEE--ECCEEEEEcCCCeEEEEECCCCc----EEEcccccCCCcccCCEE-ECC
Confidence 47899999988865321 22222333333 345688888777 9999976542 122111 11 01111222 368
Q ss_pred CEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEECCE
Q 017520 275 TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNH 353 (370)
Q Consensus 275 ~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~ 353 (370)
.+|+++..+ .++.+|. +|+++..+....+. ..+.-...+++
T Consensus 337 ~l~v~~~~G-----------------------------------~l~~ld~~tG~~~~~~~~~~~~---~~s~P~~~~~~ 378 (394)
T PRK11138 337 YLVVGDSEG-----------------------------------YLHWINREDGRFVAQQKVDSSG---FLSEPVVADDK 378 (394)
T ss_pred EEEEEeCCC-----------------------------------EEEEEECCCCCEEEEEEcCCCc---ceeCCEEECCE
Confidence 899987664 5788885 79999988654322 22333446889
Q ss_pred EEEEeCCCCeEE
Q 017520 354 LYVISLTSNFIG 365 (370)
Q Consensus 354 L~~gs~~~~~i~ 365 (370)
||+++.++.-++
T Consensus 379 l~v~t~~G~l~~ 390 (394)
T PRK11138 379 LLIQARDGTVYA 390 (394)
T ss_pred EEEEeCCceEEE
Confidence 999999876443
No 44
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.52 E-value=4.1e-06 Score=82.41 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=119.5
Q ss_pred CCcceEEc-CCCcEEEEe-cCCeEEEEe-CC-eEEEEE-ecCCCceeceEEcCCC-cEEEEeCC-CceEEEcCCC--eEE
Q 017520 80 HPEDASMD-KNGVIYTAT-RDGWIKRLQ-DG-TWVNWK-FIDSQTLVGLTSTKEG-HLIICDNA-NGLHKVSEDG--VEN 150 (370)
Q Consensus 80 ~P~~i~~d-~~G~l~v~~-~~g~I~~~~-~g-~~~~~~-~~~~~p~~gl~~d~~G-~L~v~~~~-~gi~~~~~~g--~~~ 150 (370)
-|-+|.+| .+..+|.++ ....|.+-. +| +.+.+. .....|- ||++|.-+ ++|.+|.. ..|-...-+| .++
T Consensus 1026 IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkv 1104 (1289)
T KOG1214|consen 1026 IIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPE-GIAVDHIRRNMYWTDSVLDKIEVALLDGSERKV 1104 (1289)
T ss_pred eeeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCcc-ceeeeeccceeeeeccccchhheeecCCceeeE
Confidence 35667777 466788888 444566655 44 555554 4557789 99999766 69998865 2222222355 444
Q ss_pred EEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-ecCCCCccceEEcc
Q 017520 151 FLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSR 228 (370)
Q Consensus 151 ~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~p~gi~~~~ 228 (370)
++.. + +-.|.+|++|+ .|+||.+|.. +.+-.|-+.+.+++..+++ .+++.-|||+.|++
T Consensus 1105 Lf~t--d--LVNPR~iv~D~~rgnLYwtDWn---------------RenPkIets~mDG~NrRilin~DigLPNGLtfdp 1165 (1289)
T KOG1214|consen 1105 LFYT--D--LVNPRAIVVDPIRGNLYWTDWN---------------RENPKIETSSMDGENRRILINTDIGLPNGLTFDP 1165 (1289)
T ss_pred EEee--c--ccCcceEEeecccCceeecccc---------------ccCCcceeeccCCccceEEeecccCCCCCceeCc
Confidence 4332 2 34678899998 6799999875 2334566666765555554 46788999999999
Q ss_pred CCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520 229 DEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 229 dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~ 283 (370)
..+.|-|.+.+. +.....++. +.+.. ..++ .+|-+|.-+.+. +|.+++..
T Consensus 1166 fs~~LCWvDAGt~rleC~~p~g~--gRR~i-~~~L-qYPF~itsy~~~-fY~TDWk~ 1217 (1289)
T KOG1214|consen 1166 FSKLLCWVDAGTKRLECTLPDGT--GRRVI-QNNL-QYPFSITSYADH-FYHTDWKR 1217 (1289)
T ss_pred ccceeeEEecCCcceeEecCCCC--cchhh-hhcc-cCceeeeecccc-ceeecccc
Confidence 999999999876 777766653 33332 2233 378888887765 88888764
No 45
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.51 E-value=0.0001 Score=71.45 Aligned_cols=199 Identities=15% Similarity=0.164 Sum_probs=118.5
Q ss_pred ceEEcCCCc-EEEEe---cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEE-eCC--CceEEEc-CCC-eEE
Q 017520 83 DASMDKNGV-IYTAT---RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIIC-DNA--NGLHKVS-EDG-VEN 150 (370)
Q Consensus 83 ~i~~d~~G~-l~v~~---~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~-~~~--~gi~~~~-~~g-~~~ 150 (370)
+.++++||+ |++.+ ....|+.++ +|+.+.+....+... .+++++||+ |+++ +.. ..|+.++ .+| .+.
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~ 286 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR 286 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE
Confidence 346677875 55444 234699888 566555544334444 678999996 5444 322 2488888 556 554
Q ss_pred EEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccC
Q 017520 151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD 229 (370)
Q Consensus 151 ~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~d 229 (370)
+... . ......++++||+ |+++... .....||.+|.++++.+.+..........++++|
T Consensus 287 lt~~-~----~~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpD 346 (433)
T PRK04922 287 LTNH-F----GIDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYNARASVSPD 346 (433)
T ss_pred CccC-C----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence 4321 1 1223568899996 6555321 1224699999877776655433233446899999
Q ss_pred CCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhC
Q 017520 230 EDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAY 304 (370)
Q Consensus 230 g~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (370)
|+.++++...+ |+.+++++.. ...+... .......+++||+ ++.+....
T Consensus 347 G~~Ia~~~~~~~~~~I~v~d~~~g~---~~~Lt~~--~~~~~p~~spdG~~i~~~s~~~--------------------- 400 (433)
T PRK04922 347 GKKIAMVHGSGGQYRIAVMDLSTGS---VRTLTPG--SLDESPSFAPNGSMVLYATREG--------------------- 400 (433)
T ss_pred CCEEEEEECCCCceeEEEEECCCCC---eEECCCC--CCCCCceECCCCCEEEEEEecC---------------------
Confidence 99888865432 8888876542 2233211 1234567889997 33333221
Q ss_pred CccccccccCCCceEEEEECCCCcEEEEEeCCCCC
Q 017520 305 PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ 339 (370)
Q Consensus 305 ~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~ 339 (370)
..+.++.++.+|+..+.+....|.
T Consensus 401 -----------g~~~L~~~~~~g~~~~~l~~~~g~ 424 (433)
T PRK04922 401 -----------GRGVLAAVSTDGRVRQRLVSADGE 424 (433)
T ss_pred -----------CceEEEEEECCCCceEEcccCCCC
Confidence 124688888888877777654443
No 46
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=0.00049 Score=61.07 Aligned_cols=229 Identities=13% Similarity=0.117 Sum_probs=137.7
Q ss_pred CCCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEecC-CCceeceEEc-CCCcEEEEeCC--CceEEEc--CCC-e
Q 017520 79 NHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFID-SQTLVGLTST-KEGHLIICDNA--NGLHKVS--EDG-V 148 (370)
Q Consensus 79 ~~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~-~~p~~gl~~d-~~G~L~v~~~~--~gi~~~~--~~g-~ 148 (370)
..+++|.++.+|...+++ .+..|..++ +|+........ -.+. -+.|. .+..+.-+... .-|..++ .+. +
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~-~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVD-LACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccccc-EEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 468999999999877764 666788888 77654433322 1233 34444 33344444331 2355555 344 6
Q ss_pred EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEcc
Q 017520 149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 228 (370)
Q Consensus 149 ~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~ 228 (370)
+.+ .|.. ..++.|.+.|-+..+++.+ .+..|..||....+.+.+.. +..+.-.|+||
T Consensus 94 RYF----~GH~-~~V~sL~~sP~~d~FlS~S-----------------~D~tvrLWDlR~~~cqg~l~-~~~~pi~AfDp 150 (311)
T KOG1446|consen 94 RYF----PGHK-KRVNSLSVSPKDDTFLSSS-----------------LDKTVRLWDLRVKKCQGLLN-LSGRPIAAFDP 150 (311)
T ss_pred EEc----CCCC-ceEEEEEecCCCCeEEecc-----------------cCCeEEeeEecCCCCceEEe-cCCCcceeECC
Confidence 655 3322 4688999999889999865 34678888887666655443 34556789999
Q ss_pred CCCEEEEEeCCc--EEEEEeCCCCCCceeeeccC--CCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHh
Q 017520 229 DEDYVVVCESWK--CRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAA 303 (370)
Q Consensus 229 dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (370)
+|- ++....++ |..||+..-..+-+..|.-+ ....-.+|.+++||. +.+++..+
T Consensus 151 ~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s-------------------- 209 (311)
T KOG1446|consen 151 EGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS-------------------- 209 (311)
T ss_pred CCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC--------------------
Confidence 997 44444443 88899864333334444211 111235688999996 66776654
Q ss_pred CCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCccccceeEEE-ECCEEEEEeCCCCeEEEEe
Q 017520 304 YPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNFIGKVQ 368 (370)
Q Consensus 304 ~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~-~~g~L~~gs~~~~~i~~~~ 368 (370)
.++.+| -+|.++.+|....+...-. -.+.. -+++..+++-....|.+.+
T Consensus 210 ---------------~~~~lDAf~G~~~~tfs~~~~~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 210 ---------------FIYLLDAFDGTVKSTFSGYPNAGNLP-LSATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred ---------------cEEEEEccCCcEeeeEeeccCCCCcc-eeEEECCCCcEEEEecCCCcEEEEE
Confidence 467777 4899888886654331111 23333 3556666666655555544
No 47
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.48 E-value=1.1e-05 Score=73.32 Aligned_cols=182 Identities=18% Similarity=0.272 Sum_probs=106.1
Q ss_pred cceEEcCCCcEEEEecC-------------CeEEEEe--CCe-EEEEEec------CCCceeceEEcC-C-----CcEEE
Q 017520 82 EDASMDKNGVIYTATRD-------------GWIKRLQ--DGT-WVNWKFI------DSQTLVGLTSTK-E-----GHLII 133 (370)
Q Consensus 82 ~~i~~d~~G~l~v~~~~-------------g~I~~~~--~g~-~~~~~~~------~~~p~~gl~~d~-~-----G~L~v 133 (370)
-.+.+|+.|+||+-|.. -+|..|| +++ ++++..+ ..... .+++|. + +.+||
T Consensus 4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~ln-dl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLN-DLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEE-EEEEECTTTTS-SEEEEE
T ss_pred cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccc-eEEEEccCCCCcceEEEE
Confidence 46889999999998721 2799999 554 3444322 12234 678874 2 46999
Q ss_pred EeCC-CceEEEc-CCC--eEEEEeec-----------CCcccc---cccceEEcC---CC-cEEEEeCCCCCCCccceec
Q 017520 134 CDNA-NGLHKVS-EDG--VENFLSYV-----------NGSKLR---FANDVVEAS---DG-SLYFTVSSSKYLPHEYCLD 191 (370)
Q Consensus 134 ~~~~-~gi~~~~-~~g--~~~~~~~~-----------~g~~~~---~~~~l~~d~---~G-~l~v~d~~~~~~~~~~~~~ 191 (370)
+|.. .||+.++ .+| .+.+.... .|..+. .+.+++.++ +| .||+.--+
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls----------- 151 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS----------- 151 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-----------
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC-----------
Confidence 9987 6899999 777 44442211 111111 234455544 44 47777532
Q ss_pred ccccCCCceEEEEeCC-------------CCeEEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCC-CCCcee
Q 017520 192 ILEGKPHGQLLKYDPS-------------SNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGE-RKGKLE 255 (370)
Q Consensus 192 ~~~~~~~g~l~~~d~~-------------t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~-~~~~~~ 255 (370)
...+|++..+ ..+++.+........|+++|++|. +|+++... |.+++.+++ ...+.+
T Consensus 152 ------s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~ 224 (287)
T PF03022_consen 152 ------SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENFE 224 (287)
T ss_dssp -------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCEE
T ss_pred ------CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccchh
Confidence 2356666421 012233333234567999999887 99998876 999998764 222344
Q ss_pred eeccCC--CCCCCceeECC--CCCEEEEEec
Q 017520 256 TFAENL--PGAPDNINLAP--DGTFWIAIIK 282 (370)
Q Consensus 256 ~~~~~~--~g~p~~i~~d~--~G~lwv~~~~ 282 (370)
.+.... -..|+++.+++ +|.+|+.++.
T Consensus 225 ~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 225 ILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred eeEEcCceeeccceeeeccccCceEEEEECc
Confidence 443221 24799999999 9999999865
No 48
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.45 E-value=0.00011 Score=69.79 Aligned_cols=123 Identities=14% Similarity=0.124 Sum_probs=73.0
Q ss_pred CCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeecc-CCCC-CCCceeECCC
Q 017520 197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAE-NLPG-APDNINLAPD 273 (370)
Q Consensus 197 ~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~-~~~g-~p~~i~~d~~ 273 (370)
..+.++.+|.++++...... .......++ +++.+|+....+ |+.+|.+..+. .+.. ...+ ......+ .+
T Consensus 249 ~~g~l~a~d~~tG~~~W~~~-~~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~----~W~~~~~~~~~~ssp~i-~g 320 (377)
T TIGR03300 249 YQGRVAALDLRSGRVLWKRD-ASSYQGPAV--DDNRLYVTDADGVVVALDRRSGSE----LWKNDELKYRQLTAPAV-VG 320 (377)
T ss_pred cCCEEEEEECCCCcEEEeec-cCCccCceE--eCCEEEEECCCCeEEEEECCCCcE----EEccccccCCccccCEE-EC
Confidence 35789999998776543222 222223333 345689888777 99999764321 1110 1111 1111222 24
Q ss_pred CCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEECC
Q 017520 274 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDN 352 (370)
Q Consensus 274 G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g 352 (370)
+++|++...+ .++.+|. +|+++..+....+. ..+.....++
T Consensus 321 ~~l~~~~~~G-----------------------------------~l~~~d~~tG~~~~~~~~~~~~---~~~sp~~~~~ 362 (377)
T TIGR03300 321 GYLVVGDFEG-----------------------------------YLHWLSREDGSFVARLKTDGSG---IASPPVVVGD 362 (377)
T ss_pred CEEEEEeCCC-----------------------------------EEEEEECCCCCEEEEEEcCCCc---cccCCEEECC
Confidence 6788887554 5888886 59999988764432 2334455678
Q ss_pred EEEEEeCCCCeEE
Q 017520 353 HLYVISLTSNFIG 365 (370)
Q Consensus 353 ~L~~gs~~~~~i~ 365 (370)
+||+++.++.-++
T Consensus 363 ~l~v~~~dG~l~~ 375 (377)
T TIGR03300 363 GLLVQTRDGDLYA 375 (377)
T ss_pred EEEEEeCCceEEE
Confidence 8999999887554
No 49
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.44 E-value=0.00018 Score=63.37 Aligned_cols=171 Identities=16% Similarity=0.152 Sum_probs=98.9
Q ss_pred EEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEE-Eee-cCCc
Q 017520 85 SMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENF-LSY-VNGS 158 (370)
Q Consensus 85 ~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~-~~~-~~g~ 158 (370)
++..+|.+|+++.++.|+.++ +|+...-....+... ....-.++.+|++...+.++.++ ++| ...- ... .+..
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS-GAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG-SGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc-ceeeecccccccccceeeeEecccCCcceeeeecccccccc
Confidence 554688999999999999999 787654444333333 32233478899988666799999 888 4332 111 1111
Q ss_pred ccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCcc------------ceEE
Q 017520 159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN------------GVAL 226 (370)
Q Consensus 159 ~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~------------gi~~ 226 (370)
........+++ ++.+|++.. .+.|+.+|+++|+....... ..+. +-.+
T Consensus 111 ~~~~~~~~~~~-~~~~~~~~~------------------~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (238)
T PF13360_consen 111 GVRSSSSPAVD-GDRLYVGTS------------------SGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPV 170 (238)
T ss_dssp STB--SEEEEE-TTEEEEEET------------------CSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEE
T ss_pred ccccccCceEe-cCEEEEEec------------------cCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceE
Confidence 12222334444 456777753 47899999998877433222 2211 2222
Q ss_pred ccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520 227 SRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 282 (370)
Q Consensus 227 ~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 282 (370)
..++ .+|++...+ +..+|..+.+ ..+... ...+..+....++.+|+++..
T Consensus 171 ~~~~-~v~~~~~~g~~~~~d~~tg~----~~w~~~-~~~~~~~~~~~~~~l~~~~~~ 221 (238)
T PF13360_consen 171 ISDG-RVYVSSGDGRVVAVDLATGE----KLWSKP-ISGIYSLPSVDGGTLYVTSSD 221 (238)
T ss_dssp CCTT-EEEEECCTSSEEEEETTTTE----EEEEEC-SS-ECECEECCCTEEEEEETT
T ss_pred EECC-EEEEEcCCCeEEEEECCCCC----EEEEec-CCCccCCceeeCCEEEEEeCC
Confidence 2344 689988777 7777876542 123212 222233334556788888843
No 50
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.43 E-value=6.7e-05 Score=71.83 Aligned_cols=214 Identities=13% Similarity=0.118 Sum_probs=116.2
Q ss_pred CCcEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeec-CCcccccc
Q 017520 89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYV-NGSKLRFA 163 (370)
Q Consensus 89 ~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~-~g~~~~~~ 163 (370)
++.+|+++.+|.|+.+| +|+...-....+.......+. ++.+|++...+.++.+| ++| ...-.... +.......
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 57899999889999999 777544333233222123343 67899987666799999 688 33322211 10000000
Q ss_pred cceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccc---------eEEcc--CCCE
Q 017520 164 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG---------VALSR--DEDY 232 (370)
Q Consensus 164 ~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~g---------i~~~~--dg~~ 232 (370)
..-+++ +|.+|++.. ++.++.+|.++++..... ....+.+ +..+| .++.
T Consensus 199 ~sP~v~-~~~v~~~~~------------------~g~v~a~d~~~G~~~W~~-~~~~~~~~~~~~~~~~~~~sP~v~~~~ 258 (394)
T PRK11138 199 SAPATA-FGGAIVGGD------------------NGRVSAVLMEQGQLIWQQ-RISQPTGATEIDRLVDVDTTPVVVGGV 258 (394)
T ss_pred CCCEEE-CCEEEEEcC------------------CCEEEEEEccCChhhhee-ccccCCCccchhcccccCCCcEEECCE
Confidence 111232 466777743 367888888777543211 1111110 11111 2345
Q ss_pred EEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCcccccc
Q 017520 233 VVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 311 (370)
Q Consensus 233 l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (370)
+|++...+ ++.+|....+. .+..... .+..+.. .+|++|+++..+
T Consensus 259 vy~~~~~g~l~ald~~tG~~----~W~~~~~-~~~~~~~-~~~~vy~~~~~g---------------------------- 304 (394)
T PRK11138 259 VYALAYNGNLVALDLRSGQI----VWKREYG-SVNDFAV-DGGRIYLVDQND---------------------------- 304 (394)
T ss_pred EEEEEcCCeEEEEECCCCCE----EEeecCC-CccCcEE-ECCEEEEEcCCC----------------------------
Confidence 88887766 99999765421 2211111 1223333 357899987654
Q ss_pred ccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEe
Q 017520 312 ITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ 368 (370)
Q Consensus 312 ~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~ 368 (370)
.++.+|. +|+.++......+. ..+.....+++||+++..+. |..++
T Consensus 305 -------~l~ald~~tG~~~W~~~~~~~~---~~~sp~v~~g~l~v~~~~G~-l~~ld 351 (394)
T PRK11138 305 -------RVYALDTRGGVELWSQSDLLHR---LLTAPVLYNGYLVVGDSEGY-LHWIN 351 (394)
T ss_pred -------eEEEEECCCCcEEEcccccCCC---cccCCEEECCEEEEEeCCCE-EEEEE
Confidence 5888885 68877765443322 22333346788888877653 43343
No 51
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=0.0003 Score=68.13 Aligned_cols=199 Identities=15% Similarity=0.118 Sum_probs=118.4
Q ss_pred ceEEcCCCc-EE-EEe--cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC---CceEEEc-CCC-eEE
Q 017520 83 DASMDKNGV-IY-TAT--RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VEN 150 (370)
Q Consensus 83 ~i~~d~~G~-l~-v~~--~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~---~gi~~~~-~~g-~~~ 150 (370)
+.++++||. |. +.. .+..|+.++ +|+.+.+....+... .+++++||+ |++.... ..|+.++ +++ .+.
T Consensus 203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~ 281 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ 281 (429)
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence 457788885 33 332 234688887 566555543333344 688999996 5544322 2488888 566 555
Q ss_pred EEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccC
Q 017520 151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD 229 (370)
Q Consensus 151 ~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~d 229 (370)
+... . .......++|||+ |+++... .....||++|.+++..+.+...........+++|
T Consensus 282 lt~~-~----~~~~~~~wSPDG~~I~f~s~~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD 341 (429)
T PRK03629 282 VTDG-R----SNNTEPTWFPDSQNLAYTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSD 341 (429)
T ss_pred ccCC-C----CCcCceEECCCCCEEEEEeCC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence 4322 1 1344678999996 5555321 0224799999988777665443334456889999
Q ss_pred CCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEE-EecCchhHHHhhhcchhHHHHHHhC
Q 017520 230 EDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA-IIKLDARRMKILNSSKLIKHVLAAY 304 (370)
Q Consensus 230 g~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~-~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (370)
|+.++++...+ |+.+++++. ..+.+... ..-....+++||...+. ...+
T Consensus 342 G~~Ia~~~~~~g~~~I~~~dl~~g---~~~~Lt~~--~~~~~p~~SpDG~~i~~~s~~~--------------------- 395 (429)
T PRK03629 342 GKFMVMVSSNGGQQHIAKQDLATG---GVQVLTDT--FLDETPSIAPNGTMVIYSSSQG--------------------- 395 (429)
T ss_pred CCEEEEEEccCCCceEEEEECCCC---CeEEeCCC--CCCCCceECCCCCEEEEEEcCC---------------------
Confidence 99887765432 888887654 23333221 11234678899974333 3322
Q ss_pred CccccccccCCCceEEEEECCCCcEEEEEeCCCCC
Q 017520 305 PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ 339 (370)
Q Consensus 305 ~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~ 339 (370)
....+..++.+|+..+.+...+|.
T Consensus 396 -----------~~~~l~~~~~~G~~~~~l~~~~~~ 419 (429)
T PRK03629 396 -----------MGSVLNLVSTDGRFKARLPATDGQ 419 (429)
T ss_pred -----------CceEEEEEECCCCCeEECccCCCC
Confidence 013466778888887777654443
No 52
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.40 E-value=0.00037 Score=67.44 Aligned_cols=199 Identities=14% Similarity=0.169 Sum_probs=116.9
Q ss_pred ceEEcCCCc-EEEEe-c--CCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC---CceEEEc-CCC-eEE
Q 017520 83 DASMDKNGV-IYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VEN 150 (370)
Q Consensus 83 ~i~~d~~G~-l~v~~-~--~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~---~gi~~~~-~~g-~~~ 150 (370)
+.++.+||+ |++.+ . +..|+.++ +|+...+....+... ..++++||+ |+++... ..|+.++ ..+ .+.
T Consensus 200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~ 278 (427)
T PRK02889 200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR 278 (427)
T ss_pred cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE
Confidence 347778885 44443 2 34599998 566655544444445 788999996 5443222 2477887 444 444
Q ss_pred EEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccC
Q 017520 151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD 229 (370)
Q Consensus 151 ~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~d 229 (370)
+... . .......+++||+ |+++... .....||.++.+++..+.+...........+++|
T Consensus 279 lt~~-~----~~~~~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpD 338 (427)
T PRK02889 279 LTQS-S----GIDTEPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPD 338 (427)
T ss_pred CCCC-C----CCCcCeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCcCceEECCC
Confidence 3221 1 1223467899996 6655321 1234688998876666554322223345789999
Q ss_pred CCEEEEEeCC-c---EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhC
Q 017520 230 EDYVVVCESW-K---CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAY 304 (370)
Q Consensus 230 g~~l~v~~~~-~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (370)
|+.++++... + |+++++++.. ...+... .......+++||+ |+.+...+
T Consensus 339 G~~Ia~~s~~~g~~~I~v~d~~~g~---~~~lt~~--~~~~~p~~spdg~~l~~~~~~~--------------------- 392 (427)
T PRK02889 339 GKLLAYISRVGGAFKLYVQDLATGQ---VTALTDT--TRDESPSFAPNGRYILYATQQG--------------------- 392 (427)
T ss_pred CCEEEEEEccCCcEEEEEEECCCCC---eEEccCC--CCccCceECCCCCEEEEEEecC---------------------
Confidence 9988766543 2 8888876542 2333221 2234577889996 44443322
Q ss_pred CccccccccCCCceEEEEECCCCcEEEEEeCCCCC
Q 017520 305 PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ 339 (370)
Q Consensus 305 ~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~ 339 (370)
....++.++.+|+..+.+..+.|.
T Consensus 393 -----------g~~~l~~~~~~g~~~~~l~~~~g~ 416 (427)
T PRK02889 393 -----------GRSVLAAVSSDGRIKQRLSVQGGD 416 (427)
T ss_pred -----------CCEEEEEEECCCCceEEeecCCCC
Confidence 124577778888887777665554
No 53
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.39 E-value=0.00058 Score=66.27 Aligned_cols=153 Identities=15% Similarity=0.093 Sum_probs=89.7
Q ss_pred eEEEEe-CCe-EEEEEecCCCceeceEEcCCCc-E-EEEeCC--CceEEEc-CCC-eEEEEeecCCcccccccceEEcCC
Q 017520 100 WIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH-L-IICDNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 171 (370)
Q Consensus 100 ~I~~~~-~g~-~~~~~~~~~~p~~gl~~d~~G~-L-~v~~~~--~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~ 171 (370)
.|+.++ +|. .+.+........ ..++++||+ | |+.... ..|+.++ .+| .+.+.. ..+ .....+++||
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~-~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD 256 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVL-TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-FPG----MTFAPRFSPD 256 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeE-eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec-CCC----cccCcEECCC
Confidence 566666 443 333333333344 788899996 4 333221 3588888 566 544432 122 2345688999
Q ss_pred Cc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC-Cc---EEEEEe
Q 017520 172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-WK---CRKYWL 246 (370)
Q Consensus 172 G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~-~~---l~~~~~ 246 (370)
|+ |.++... .....||.+|.+++..+.+...........+++||+.++++.. .+ |+++++
T Consensus 257 G~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 257 GRKVVMSLSQ---------------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred CCEEEEEEec---------------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence 95 6555321 1335799999988877766544334456889999998777653 32 899997
Q ss_pred CCCCCCceeeeccCCCCCCCceeECCCCCEE
Q 017520 247 KGERKGKLETFAENLPGAPDNINLAPDGTFW 277 (370)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lw 277 (370)
++.. .+.+... .+.......++||+..
T Consensus 322 ~g~~---~~~lt~~-~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 322 DGSN---PRRISFG-GGRYSTPVWSPRGDLI 348 (435)
T ss_pred CCCC---eEEeecC-CCcccCeEECCCCCEE
Confidence 7642 2333211 2223346678888633
No 54
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.37 E-value=0.00037 Score=67.52 Aligned_cols=200 Identities=16% Similarity=0.168 Sum_probs=118.1
Q ss_pred cceEEcCCCc-E-EEEec--CCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC---CceEEEc-CCC-eE
Q 017520 82 EDASMDKNGV-I-YTATR--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VE 149 (370)
Q Consensus 82 ~~i~~d~~G~-l-~v~~~--~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~---~gi~~~~-~~g-~~ 149 (370)
.+..+++||+ | |+... ...|+.++ +|+.+.+....+... ...+++||+ |++.... ..|+.++ .++ .+
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~ 280 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS 280 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 3447778884 4 44433 34688888 566665544444444 678999996 5443322 2488888 556 55
Q ss_pred EEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEcc
Q 017520 150 NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 228 (370)
Q Consensus 150 ~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~ 228 (370)
.+... . .......+++||+ |+++... .+...||++|.++++.+.+...........+++
T Consensus 281 ~lt~~-~----~~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp 340 (430)
T PRK00178 281 RVTNH-P----AIDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA 340 (430)
T ss_pred EcccC-C----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECC
Confidence 44321 1 1223457889985 6666321 133579999988787765543323334568999
Q ss_pred CCCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEE-EEEecCchhHHHhhhcchhHHHHHHh
Q 017520 229 DEDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFW-IAIIKLDARRMKILNSSKLIKHVLAA 303 (370)
Q Consensus 229 dg~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lw-v~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (370)
||+.++++.... |+++|+++. ..+.+... +......+++||+.. .+...+
T Consensus 341 dg~~i~~~~~~~~~~~l~~~dl~tg---~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~-------------------- 395 (430)
T PRK00178 341 DGKTLVMVHRQDGNFHVAAQDLQRG---SVRILTDT--SLDESPSVAPNGTMLIYATRQQ-------------------- 395 (430)
T ss_pred CCCEEEEEEccCCceEEEEEECCCC---CEEEccCC--CCCCCceECCCCCEEEEEEecC--------------------
Confidence 999988876532 888888764 23333221 122345778888633 333221
Q ss_pred CCccccccccCCCceEEEEECCCCcEEEEEeCCCCC
Q 017520 304 YPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ 339 (370)
Q Consensus 304 ~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~ 339 (370)
....++.++.+|+..+.+..+.|.
T Consensus 396 ------------g~~~l~~~~~~g~~~~~l~~~~g~ 419 (430)
T PRK00178 396 ------------GRGVLMLVSINGRVRLPLPTAQGE 419 (430)
T ss_pred ------------CceEEEEEECCCCceEECcCCCCC
Confidence 124577778888777666555553
No 55
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.34 E-value=0.00064 Score=64.26 Aligned_cols=181 Identities=19% Similarity=0.243 Sum_probs=118.6
Q ss_pred CCcCCCcceEEcCCC-cEEEEecCCeEEEEe--CCeEEEEE--ecCCCceeceEEcCCCcEEEEeCCCceEEEc-C-CC-
Q 017520 76 GSVNHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWK--FIDSQTLVGLTSTKEGHLIICDNANGLHKVS-E-DG- 147 (370)
Q Consensus 76 ~~~~~P~~i~~d~~G-~l~v~~~~g~I~~~~--~g~~~~~~--~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~-~g- 147 (370)
|.-.+-.++++.++| .||.++.+|.|..|+ .|.--.+. ...+... +|+.+..+.++.+.++.-+.+++ . +|
T Consensus 318 GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~-~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~ 396 (603)
T KOG0318|consen 318 GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK-GMAASESGELFTIGWDDTLRVISLKDNGY 396 (603)
T ss_pred ccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE-EEeecCCCcEEEEecCCeEEEEecccCcc
Confidence 443455667787766 688999999999999 44433331 2334566 89998889999998887787777 3 33
Q ss_pred eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEE
Q 017520 148 VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL 226 (370)
Q Consensus 148 ~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~ 226 (370)
-........ ..|..+++.++| .+.++.. ..|..+...++ +... .-...+.++++
T Consensus 397 t~~~~~~lg----~QP~~lav~~d~~~avv~~~-------------------~~iv~l~~~~~-~~~~-~~~y~~s~vAv 451 (603)
T KOG0318|consen 397 TKSEVVKLG----SQPKGLAVLSDGGTAVVACI-------------------SDIVLLQDQTK-VSSI-PIGYESSAVAV 451 (603)
T ss_pred cccceeecC----CCceeEEEcCCCCEEEEEec-------------------CcEEEEecCCc-ceee-ccccccceEEE
Confidence 221111111 356789999887 4555532 23444443322 2221 23457889999
Q ss_pred ccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520 227 SRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 227 ~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~ 283 (370)
+++++.+.|....+ |..|.+.+....+..... ...+-+..+++++||.+.+++-..
T Consensus 452 ~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~vaySpd~~yla~~Da~ 508 (603)
T KOG0318|consen 452 SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL-EHRAAITDVAYSPDGAYLAAGDAS 508 (603)
T ss_pred cCCCCEEEEecccceEEEEEecCCcccceeeee-cccCCceEEEECCCCcEEEEeccC
Confidence 99999888888877 999999886432221222 345567889999999988887654
No 56
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.33 E-value=2.6e-05 Score=66.44 Aligned_cols=137 Identities=15% Similarity=0.125 Sum_probs=89.7
Q ss_pred ceEEcCCCcEEEEe----------cCCeEEEEe-CCeEEEEEecCCCceeceEEcCCC-cEEEEeCC-Cce--EEEc-CC
Q 017520 83 DASMDKNGVIYTAT----------RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNA-NGL--HKVS-ED 146 (370)
Q Consensus 83 ~i~~d~~G~l~v~~----------~~g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~~~~-~gi--~~~~-~~ 146 (370)
+--+|++|+-|.|+ ..|.++++. +++++.+...-+-++ ||+.|.|- .+|+.|.. ..| +.++ ++
T Consensus 113 DgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsN-gl~Wd~d~K~fY~iDsln~~V~a~dyd~~t 191 (310)
T KOG4499|consen 113 DGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISN-GLAWDSDAKKFYYIDSLNYEVDAYDYDCPT 191 (310)
T ss_pred cCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCc-cccccccCcEEEEEccCceEEeeeecCCCc
Confidence 34678899999887 245666666 777887777778889 99999776 47887765 456 4455 66
Q ss_pred C----eEEEEeecCCc--ccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCC
Q 017520 147 G----VENFLSYVNGS--KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFY 219 (370)
Q Consensus 147 g----~~~~~~~~~g~--~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~ 219 (370)
| .+.+.+..... ....|.++++|.+|+|||+..+ .++|+++||.+|+.-.-. -...
T Consensus 192 G~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-----------------g~~V~~~dp~tGK~L~eiklPt~ 254 (310)
T KOG4499|consen 192 GDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-----------------GGTVQKVDPTTGKILLEIKLPTP 254 (310)
T ss_pred ccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------CcEEEEECCCCCcEEEEEEcCCC
Confidence 6 23333322212 2347889999999999999763 479999999988763211 1112
Q ss_pred CccceEEccC-CCEEEEEe
Q 017520 220 FANGVALSRD-EDYVVVCE 237 (370)
Q Consensus 220 ~p~gi~~~~d-g~~l~v~~ 237 (370)
.....||-.. =+.+|++.
T Consensus 255 qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 255 QITSCCFGGKNLDILYVTT 273 (310)
T ss_pred ceEEEEecCCCccEEEEEe
Confidence 2334555433 23455554
No 57
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.31 E-value=0.00018 Score=63.75 Aligned_cols=193 Identities=15% Similarity=0.184 Sum_probs=103.5
Q ss_pred CceeceEEcCC-CcEEEEeCC-CceEEEcCCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceeccc
Q 017520 118 QTLVGLTSTKE-GHLIICDNA-NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL 193 (370)
Q Consensus 118 ~p~~gl~~d~~-G~L~v~~~~-~gi~~~~~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~ 193 (370)
.+. ||+++++ ++||..... ..|+.++.+| ++.+. ..| +.-+.+|+.-.+|.+.+++.
T Consensus 23 e~S-GLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~--l~g--~~D~EgI~y~g~~~~vl~~E-------------- 83 (248)
T PF06977_consen 23 ELS-GLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIP--LDG--FGDYEGITYLGNGRYVLSEE-------------- 83 (248)
T ss_dssp -EE-EEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE---SS---SSEEEEEE-STTEEEEEET--------------
T ss_pred Ccc-ccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEe--CCC--CCCceeEEEECCCEEEEEEc--------------
Confidence 456 9999986 568876544 5688888777 33331 222 45678899988888888764
Q ss_pred ccCCCceEEEEeC--CCCeE-----EEEecC-----CCCccceEEccCCCEEEEEeCCc---EEEEEe--CCCCCCcee-
Q 017520 194 EGKPHGQLLKYDP--SSNIT-----TLVADG-----FYFANGVALSRDEDYVVVCESWK---CRKYWL--KGERKGKLE- 255 (370)
Q Consensus 194 ~~~~~g~l~~~d~--~t~~~-----~~~~~~-----~~~p~gi~~~~dg~~l~v~~~~~---l~~~~~--~~~~~~~~~- 255 (370)
..++|+.++. .+... +.+.-+ -..-.|+++|+.++.+|++.... |+.++. .+.......
T Consensus 84 ---r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~ 160 (248)
T PF06977_consen 84 ---RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD 160 (248)
T ss_dssp ---TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred ---CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc
Confidence 2356666554 22221 111111 12347999999988888887655 444443 111100000
Q ss_pred -eec--cCCCCCCCceeECC-CCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEE
Q 017520 256 -TFA--ENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIR 331 (370)
Q Consensus 256 -~~~--~~~~g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~ 331 (370)
.+. ...-.-+.++++++ .|++||-.... .+++++|.+|+++.
T Consensus 161 ~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es----------------------------------~~l~~~d~~G~~~~ 206 (248)
T PF06977_consen 161 QDLDDDKLFVRDLSGLSYDPRTGHLLILSDES----------------------------------RLLLELDRQGRVVS 206 (248)
T ss_dssp HHHH-HT--SS---EEEEETTTTEEEEEETTT----------------------------------TEEEEE-TT--EEE
T ss_pred cccccccceeccccceEEcCCCCeEEEEECCC----------------------------------CeEEEECCCCCEEE
Confidence 000 00112367888876 56799887665 36999999999999
Q ss_pred EEeCCCCC-----ccccceeEEEE-CCEEEEEeCCCCeEEEE
Q 017520 332 NLVDPTGQ-----LMSFVTSGLQV-DNHLYVISLTSNFIGKV 367 (370)
Q Consensus 332 ~~~~~~g~-----~~~~~t~~~~~-~g~L~~gs~~~~~i~~~ 367 (370)
.+.-..|. .+.-.-.++.+ +|+|||.| ..|...++
T Consensus 207 ~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 207 SLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred EEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 88665542 12223455544 59999999 46666665
No 58
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.28 E-value=0.00023 Score=62.82 Aligned_cols=146 Identities=19% Similarity=0.183 Sum_probs=92.3
Q ss_pred CCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC---eEEEEe
Q 017520 80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG---VENFLS 153 (370)
Q Consensus 80 ~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g---~~~~~~ 153 (370)
..|+|++- ++.||.-+ .++..+.+| +-+...-....+... ||+.| ...||++|....|+.+|+.. .+.+.-
T Consensus 91 FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGW-GLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 91 FGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGW-GLTSD-GKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp -EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS---EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred cceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEecCCcce-EEEcC-CCEEEEECCccceEEECCcccceEEEEEE
Confidence 35666665 44788777 667777777 333322233456788 99976 45899999878899999543 333322
Q ss_pred ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-----------C-----
Q 017520 154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----------G----- 217 (370)
Q Consensus 154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-----------~----- 217 (370)
...+.+....|-|..- +|.||.-.. .+..|.++||++|++.-..+ .
T Consensus 168 ~~~g~pv~~LNELE~i-~G~IyANVW-----------------~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~ 229 (264)
T PF05096_consen 168 TDNGRPVSNLNELEYI-NGKIYANVW-----------------QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPD 229 (264)
T ss_dssp EETTEE---EEEEEEE-TTEEEEEET-----------------TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--T
T ss_pred EECCEECCCcEeEEEE-cCEEEEEeC-----------------CCCeEEEEeCCCCeEEEEEEhhHhhhccccccccccc
Confidence 2356777788888774 799987754 34689999999999876531 1
Q ss_pred CCCccceEEccCCCEEEEEeCCc--EEEEEe
Q 017520 218 FYFANGVALSRDEDYVVVCESWK--CRKYWL 246 (370)
Q Consensus 218 ~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~ 246 (370)
..--||||++++++.+|++.-.- ++.+.+
T Consensus 230 ~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 230 DDVLNGIAYDPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp TS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred CCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence 12348999999999999998643 666544
No 59
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.27 E-value=0.00078 Score=65.39 Aligned_cols=168 Identities=12% Similarity=0.079 Sum_probs=102.3
Q ss_pred ceEEcCCCc-EE-EEe--cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeC-C--CceEEEc-CCC-eEE
Q 017520 83 DASMDKNGV-IY-TAT--RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDN-A--NGLHKVS-EDG-VEN 150 (370)
Q Consensus 83 ~i~~d~~G~-l~-v~~--~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~-~--~gi~~~~-~~g-~~~ 150 (370)
+..+.+||. |. +.. .+..|+.++ +|+.+.+....+... +.++++||+ |+++.. . ..|+.++ .++ .+.
T Consensus 206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~ 284 (435)
T PRK05137 206 TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR 284 (435)
T ss_pred eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCceEE
Confidence 346778885 33 333 346799998 566665554444455 788999996 444332 2 3488888 555 554
Q ss_pred EEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccC
Q 017520 151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD 229 (370)
Q Consensus 151 ~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~d 229 (370)
+... . .......+++||+ |+++... .+...||++|.+++..+.+...........++||
T Consensus 285 Lt~~-~----~~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Spd 344 (435)
T PRK05137 285 LTDS-P----AIDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPR 344 (435)
T ss_pred ccCC-C----CccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCCCCeEEeecCCCcccCeEECCC
Confidence 4321 1 1233468899995 6665321 1235799999887777666543333455789999
Q ss_pred CCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCE
Q 017520 230 EDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF 276 (370)
Q Consensus 230 g~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l 276 (370)
|+.++++...+ |+.+++++.. .+.+.. ........+++||+.
T Consensus 345 G~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt~--~~~~~~p~~spDG~~ 390 (435)
T PRK05137 345 GDLIAFTKQGGGQFSIGVMKPDGSG---ERILTS--GFLVEGPTWAPNGRV 390 (435)
T ss_pred CCEEEEEEcCCCceEEEEEECCCCc---eEeccC--CCCCCCCeECCCCCE
Confidence 99888775432 8888876532 222221 123456788899973
No 60
>PRK13684 Ycf48-like protein; Provisional
Probab=98.27 E-value=0.0026 Score=59.35 Aligned_cols=177 Identities=12% Similarity=0.168 Sum_probs=91.6
Q ss_pred CCcceEEcCCCcEEEEecCCeEEEEe-CC-eEEEEEecC---C-CceeceEEcCCCcEEEEeCCCceEEEcCCC--eEEE
Q 017520 80 HPEDASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKFID---S-QTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENF 151 (370)
Q Consensus 80 ~P~~i~~d~~G~l~v~~~~g~I~~~~-~g-~~~~~~~~~---~-~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~~ 151 (370)
...+|++..+.+.|+....|.|++-. .| .++...... . ... ++.++ .++.|++.....|++-...| ++.+
T Consensus 47 ~l~~v~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~-~v~~~-~~~~~~~G~~g~i~~S~DgG~tW~~~ 124 (334)
T PRK13684 47 NLLDIAFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLI-SISFK-GDEGWIVGQPSLLLHTTDGGKNWTRI 124 (334)
T ss_pred ceEEEEEeCCCcEEEEECCCEEEEEcCCCCCceECccCCccccccee-eeEEc-CCcEEEeCCCceEEEECCCCCCCeEc
Confidence 45667887666667555578888876 34 355432211 1 234 67776 34677775444566655445 5544
Q ss_pred Eee--cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC-CCccceEEcc
Q 017520 152 LSY--VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSR 228 (370)
Q Consensus 152 ~~~--~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-~~p~gi~~~~ 228 (370)
... .++ .+..+....++++|+... .|.|++-+-..+.++.+.... ...+++.+++
T Consensus 125 ~~~~~~~~----~~~~i~~~~~~~~~~~g~------------------~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~ 182 (334)
T PRK13684 125 PLSEKLPG----SPYLITALGPGTAEMATN------------------VGAIYRTTDGGKNWEALVEDAAGVVRNLRRSP 182 (334)
T ss_pred cCCcCCCC----CceEEEEECCCcceeeec------------------cceEEEECCCCCCceeCcCCCcceEEEEEECC
Confidence 211 112 233333333445565532 366777665544555443332 2346778888
Q ss_pred CCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520 229 DEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 229 dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~ 283 (370)
++.. ++....+ +++-.-++. .+.............++.+.++|++|+....+
T Consensus 183 ~g~~-v~~g~~G~i~~s~~~gg--~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G 235 (334)
T PRK13684 183 DGKY-VAVSSRGNFYSTWEPGQ--TAWTPHQRNSSRRLQSMGFQPDGNLWMLARGG 235 (334)
T ss_pred CCeE-EEEeCCceEEEEcCCCC--CeEEEeeCCCcccceeeeEcCCCCEEEEecCC
Confidence 8764 4444444 655421221 11222211112234567777888888876554
No 61
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.26 E-value=0.0013 Score=63.37 Aligned_cols=195 Identities=11% Similarity=0.045 Sum_probs=119.6
Q ss_pred EEcCCCc--EEEEe-c--CCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC---CceEEEc-CCC-eEEE
Q 017520 85 SMDKNGV--IYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENF 151 (370)
Q Consensus 85 ~~d~~G~--l~v~~-~--~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~---~gi~~~~-~~g-~~~~ 151 (370)
...+||+ +|+.+ . +..|+.++ +|+.+.+....+... ...+++||+ |.+.... ..|+.++ ++| .+.+
T Consensus 194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~L 272 (419)
T PRK04043 194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQI 272 (419)
T ss_pred EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEc
Confidence 5667885 66554 2 45799998 677776655444444 567889995 5544322 3588888 556 5555
Q ss_pred EeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCC
Q 017520 152 LSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 230 (370)
Q Consensus 152 ~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg 230 (370)
... .+ .-..-.++||| +|+|+... .....||++|.++++.+.+..... .+ ..++|||
T Consensus 273 T~~-~~----~d~~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~-~~-~~~SPDG 330 (419)
T PRK04043 273 TNY-PG----IDVNGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGK-NN-SSVSTYK 330 (419)
T ss_pred ccC-CC----ccCccEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCC-cC-ceECCCC
Confidence 332 11 11123788999 58887542 133479999999888755543211 12 4899999
Q ss_pred CEEEEEeCC---------c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHH
Q 017520 231 DYVVVCESW---------K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKH 299 (370)
Q Consensus 231 ~~l~v~~~~---------~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~ 299 (370)
+.+.++... . |+.+++++. ..+.+... +.-....+++||. ++.....+
T Consensus 331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g---~~~~LT~~--~~~~~p~~SPDG~~I~f~~~~~---------------- 389 (419)
T PRK04043 331 NYIVYSSRETNNEFGKNTFNLYLISTNSD---YIRRLTAN--GVNQFPRFSSDGGSIMFIKYLG---------------- 389 (419)
T ss_pred CEEEEEEcCCCcccCCCCcEEEEEECCCC---CeEECCCC--CCcCCeEECCCCCEEEEEEccC----------------
Confidence 987776532 2 888887664 23333321 2222367889996 44444322
Q ss_pred HHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCC
Q 017520 300 VLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ 339 (370)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~ 339 (370)
....+..++.+|+....+....|.
T Consensus 390 ----------------~~~~L~~~~l~g~~~~~l~~~~g~ 413 (419)
T PRK04043 390 ----------------NQSALGIIRLNYNKSFLFPLKVGK 413 (419)
T ss_pred ----------------CcEEEEEEecCCCeeEEeecCCCc
Confidence 124578889999888877765665
No 62
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.25 E-value=0.0019 Score=62.49 Aligned_cols=154 Identities=17% Similarity=0.159 Sum_probs=89.2
Q ss_pred eEEEEe-CCe-EEEEEecCCCceeceEEcCCCc-E-EEEeCC--CceEEEc-CCC-eEEEEeecCCcccccccceEEcCC
Q 017520 100 WIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH-L-IICDNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 171 (370)
Q Consensus 100 ~I~~~~-~g~-~~~~~~~~~~p~~gl~~d~~G~-L-~v~~~~--~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~ 171 (370)
.|+..+ +|. .+.+........ ..+++|||+ | |+.... ..++.++ .+| .+.+... .+ .....+++||
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~-~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~~----~~~~~~~SPD 253 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PR----HNGAPAFSPD 253 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCcee-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-CC----CcCCeEECCC
Confidence 455555 443 233332222334 788999996 3 333211 3477777 556 4444321 22 2345789999
Q ss_pred Cc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEe-CCc---EEEEEe
Q 017520 172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE-SWK---CRKYWL 246 (370)
Q Consensus 172 G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~-~~~---l~~~~~ 246 (370)
|+ |+++... .....|+.+|.++++.+.+...........++|||+.++++. ..+ |+++++
T Consensus 254 G~~La~~~~~---------------~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 254 GSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred CCEEEEEEcC---------------CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 95 6665321 123469999998888776655444556789999999775554 333 888887
Q ss_pred CCCCCCceeeeccCCCCCCCceeECCCCCEEE
Q 017520 247 KGERKGKLETFAENLPGAPDNINLAPDGTFWI 278 (370)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv 278 (370)
++.. .+.+. ...+......+++||+..+
T Consensus 319 ~~g~---~~~lt-~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 319 NGGA---PQRIT-WEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred CCCC---eEEee-cCCCCccCEEECCCCCEEE
Confidence 6642 23332 1122234577888886443
No 63
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.24 E-value=0.0013 Score=63.29 Aligned_cols=172 Identities=13% Similarity=0.123 Sum_probs=101.9
Q ss_pred eEEcCCCc-EEEEe-c--CCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC---CceEEEc-CCC-eEEE
Q 017520 84 ASMDKNGV-IYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENF 151 (370)
Q Consensus 84 i~~d~~G~-l~v~~-~--~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~---~gi~~~~-~~g-~~~~ 151 (370)
..+++||+ |++.. . ...|+.++ +|+.+......+... ++++++||+ |+++... ..|+.++ .++ .+.+
T Consensus 195 p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l 273 (417)
T TIGR02800 195 PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL 273 (417)
T ss_pred ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC
Confidence 35667775 44443 2 24688888 566655544444556 788999996 6554332 2488888 455 4443
Q ss_pred EeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCC
Q 017520 152 LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 230 (370)
Q Consensus 152 ~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg 230 (370)
... .+ ......+.+||+ |+++... .....||.+|.++++.+.+..........++++||
T Consensus 274 ~~~-~~----~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg 333 (417)
T TIGR02800 274 TNG-PG----IDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDG 333 (417)
T ss_pred CCC-CC----CCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccCeEECCCC
Confidence 221 11 122457788885 5555321 12347999998877776665444455678999999
Q ss_pred CEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEe
Q 017520 231 DYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAII 281 (370)
Q Consensus 231 ~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~ 281 (370)
+.++++.... |+.+++.+. ..+.+.. ........+++||+ ++.+..
T Consensus 334 ~~i~~~~~~~~~~~i~~~d~~~~---~~~~l~~--~~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 334 DLIAFVHREGGGFNIAVMDLDGG---GERVLTD--TGLDESPSFAPNGRMILYATT 384 (417)
T ss_pred CEEEEEEccCCceEEEEEeCCCC---CeEEccC--CCCCCCceECCCCCEEEEEEe
Confidence 9888877642 888887653 2233221 11233456778886 444443
No 64
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.22 E-value=0.0021 Score=62.52 Aligned_cols=132 Identities=12% Similarity=0.082 Sum_probs=79.6
Q ss_pred ceEEcCCCc-EEEEeCC---CceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccc
Q 017520 122 GLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILE 194 (370)
Q Consensus 122 gl~~d~~G~-L~v~~~~---~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~ 194 (370)
...+++||+ |+.+... ..|+.++ .+| .+.+.. ..+ .....+++|||+ |+++...
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-~~g----~~~~~~wSPDG~~La~~~~~-------------- 282 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-FPG----INGAPRFSPDGKKLALVLSK-------------- 282 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-CCC----CcCCeeECCCCCEEEEEEeC--------------
Confidence 678999996 4333222 2488888 555 444422 122 223568999996 7665321
Q ss_pred cCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC-Cc---EEEEEeCCCCCCceeeeccCCCCCCCceeE
Q 017520 195 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-WK---CRKYWLKGERKGKLETFAENLPGAPDNINL 270 (370)
Q Consensus 195 ~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~-~~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~ 270 (370)
.....||.+|.++++.+.+..........++++||+.++++.. .+ |+++++++.+ .+.+.. .........+
T Consensus 283 -~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~---~~~Lt~-~g~~~~~~~~ 357 (448)
T PRK04792 283 -DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK---VSRLTF-EGEQNLGGSI 357 (448)
T ss_pred -CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEEec-CCCCCcCeeE
Confidence 1234699999988887766554444566889999998877654 22 8888886542 222211 1112234577
Q ss_pred CCCCCEE
Q 017520 271 APDGTFW 277 (370)
Q Consensus 271 d~~G~lw 277 (370)
++||+..
T Consensus 358 SpDG~~l 364 (448)
T PRK04792 358 TPDGRSM 364 (448)
T ss_pred CCCCCEE
Confidence 8888643
No 65
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.21 E-value=0.0033 Score=60.56 Aligned_cols=153 Identities=14% Similarity=0.083 Sum_probs=90.9
Q ss_pred eEEEEe-CCeE-EEEEecCCCceeceEEcCCCc--EEEEeCC---CceEEEc-CCC-eEEEEeecCCcccccccceEEcC
Q 017520 100 WIKRLQ-DGTW-VNWKFIDSQTLVGLTSTKEGH--LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS 170 (370)
Q Consensus 100 ~I~~~~-~g~~-~~~~~~~~~p~~gl~~d~~G~--L~v~~~~---~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~ 170 (370)
+|+..| +|.- +.+... +... ...+++||+ +|+.... ..|+.++ .+| .+.+.. ..+ ......++|
T Consensus 170 ~l~~~d~dg~~~~~~~~~-~~~~-~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g----~~~~~~~SP 242 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKG-GLNI-FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG----MLVVSDVSK 242 (419)
T ss_pred eEEEECCCCCceeEEccC-CCeE-eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC----cEEeeEECC
Confidence 566666 6653 333332 3233 678889995 5654433 2488888 667 555543 222 112346889
Q ss_pred CC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCC-c---EEEEE
Q 017520 171 DG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW-K---CRKYW 245 (370)
Q Consensus 171 ~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~-~---l~~~~ 245 (370)
|| .+.++... ..+..||.+|.+++..+.+...-.......++|||+.++++... + |++++
T Consensus 243 DG~~la~~~~~---------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~d 307 (419)
T PRK04043 243 DGSKLLLTMAP---------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKK 307 (419)
T ss_pred CCCEEEEEEcc---------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEE
Confidence 99 47666431 13468999998888776654332223345799999988887643 2 99999
Q ss_pred eCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520 246 LKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 280 (370)
Q Consensus 246 ~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~ 280 (370)
+++.. .+.+... +. .+...++||...+-.
T Consensus 308 l~~g~---~~rlt~~--g~-~~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 308 LNSGS---VEQVVFH--GK-NNSSVSTYKNYIVYS 336 (419)
T ss_pred CCCCC---eEeCccC--CC-cCceECCCCCEEEEE
Confidence 87642 3333211 11 235788899744433
No 66
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.21 E-value=0.0011 Score=64.75 Aligned_cols=177 Identities=16% Similarity=0.224 Sum_probs=106.7
Q ss_pred cceEEcCCCcEEEEe-cCCeEEEEe--CCe---EEEEEecCCCceeceEEcCCCcEEEEeCCCc-eEEEc-CC-C--eEE
Q 017520 82 EDASMDKNGVIYTAT-RDGWIKRLQ--DGT---WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-ED-G--VEN 150 (370)
Q Consensus 82 ~~i~~d~~G~l~v~~-~~g~I~~~~--~g~---~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~-g--~~~ 150 (370)
.++.+.++|...+.. .++.+..++ .++ ............ ++++.++|...++....+ +..++ +. + .++
T Consensus 163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~-~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~ 241 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVS-DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT 241 (456)
T ss_pred EEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccccee-eeEECCCCcEEEEecCCceEEEeeccCCCeEEEE
Confidence 345566788765544 566555555 333 112212222356 899999999777665554 44444 23 3 444
Q ss_pred EEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEccC
Q 017520 151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRD 229 (370)
Q Consensus 151 ~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~d 229 (370)
+. |. ...++.+++.++|++.++-+ .++.+..+|..+++....... -....++++++|
T Consensus 242 l~----gH-~~~v~~~~f~p~g~~i~Sgs-----------------~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d 299 (456)
T KOG0266|consen 242 LK----GH-STYVTSVAFSPDGNLLVSGS-----------------DDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPD 299 (456)
T ss_pred ec----CC-CCceEEEEecCCCCEEEEec-----------------CCCcEEEEeccCCeEEEeeeccCCceEEEEECCC
Confidence 42 22 24678999999998888754 457899999987666554443 345678999999
Q ss_pred CCEEEEEeCCc-EEEEEeCCCCCCceeeeccC-CCCCCCceeECCCCCEEEEEe
Q 017520 230 EDYVVVCESWK-CRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAII 281 (370)
Q Consensus 230 g~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~-~~g~p~~i~~d~~G~lwv~~~ 281 (370)
++.++.+...+ |..||+.+....-.+.+... .+..-..+.++++|.+.+...
T Consensus 300 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 300 GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 99777776666 88898766432101112111 111125577889996444433
No 67
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.21 E-value=0.0013 Score=63.68 Aligned_cols=170 Identities=14% Similarity=0.159 Sum_probs=100.5
Q ss_pred cceEEcCCCc-EEEEe-c--CCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCC---ceEEEc-CCC-eE
Q 017520 82 EDASMDKNGV-IYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VE 149 (370)
Q Consensus 82 ~~i~~d~~G~-l~v~~-~--~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~---gi~~~~-~~g-~~ 149 (370)
.+..+.+||+ |.+.+ . +..|+.++ +|+.+.+....+... .+++++||+ |+++.... .|+.++ .++ .+
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~ 285 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS 285 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE
Confidence 4457888885 33333 2 34688888 565555543334444 788999997 55443222 377777 445 55
Q ss_pred EEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEcc
Q 017520 150 NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 228 (370)
Q Consensus 150 ~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~ 228 (370)
.+... . .......+++||+ |+++... ...-.||.++..++..+.+ ... . ....++|
T Consensus 286 ~lt~~-~----~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~~~~~~~~l-~~~-~-~~~~~Sp 342 (429)
T PRK01742 286 QLTSG-A----GNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSASGGGASLV-GGR-G-YSAQISA 342 (429)
T ss_pred eeccC-C----CCcCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEe-cCC-C-CCccCCC
Confidence 44321 1 1345678999996 6665321 1234788888876655544 221 1 3467899
Q ss_pred CCCEEEEEeCCcEEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520 229 DEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 280 (370)
Q Consensus 229 dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~ 280 (370)
||+.++++...+++++|+.+.+ .+.+.... ......+++||+..+..
T Consensus 343 DG~~ia~~~~~~i~~~Dl~~g~---~~~lt~~~--~~~~~~~sPdG~~i~~~ 389 (429)
T PRK01742 343 DGKTLVMINGDNVVKQDLTSGS---TEVLSSTF--LDESPSISPNGIMIIYS 389 (429)
T ss_pred CCCEEEEEcCCCEEEEECCCCC---eEEecCCC--CCCCceECCCCCEEEEE
Confidence 9998888766558888876542 22222111 12456789999755554
No 68
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.21 E-value=0.0016 Score=57.30 Aligned_cols=205 Identities=16% Similarity=0.111 Sum_probs=111.0
Q ss_pred CCeEEEEe--CCeEEEEEec---CCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecCCcccccccceEEcC
Q 017520 98 DGWIKRLQ--DGTWVNWKFI---DSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS 170 (370)
Q Consensus 98 ~g~I~~~~--~g~~~~~~~~---~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~ 170 (370)
+|.|..+| +|+...-... .+.+. ...+..++.+|+++..+.++.++ .+| ...-... ++ ++... ..-.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~-~~~~~---~~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPV-ATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PG-PISGA---PVVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEE-ETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SS-CGGSG---EEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCcc-ceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cc-cccce---eeec
Confidence 56778888 5654332222 12222 22454578999998778899999 688 3332222 22 11122 2335
Q ss_pred CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCC----CCccceEEccCCCEEEEEeCCc-EEEE
Q 017520 171 DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGF----YFANGVALSRDEDYVVVCESWK-CRKY 244 (370)
Q Consensus 171 ~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~----~~p~gi~~~~dg~~l~v~~~~~-l~~~ 244 (370)
++.+|+... .+.|+.+|..+++..... ... ..........+++.+|+....+ |+.+
T Consensus 76 ~~~v~v~~~------------------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 137 (238)
T PF13360_consen 76 GGRVYVGTS------------------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVAL 137 (238)
T ss_dssp TTEEEEEET------------------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEE
T ss_pred ccccccccc------------------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEE
Confidence 678888863 358999998777764431 111 1111223333467788888666 9999
Q ss_pred EeCCCCCCceeeeccCCCCCCC---------ceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCC
Q 017520 245 WLKGERKGKLETFAENLPGAPD---------NINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 315 (370)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~g~p~---------~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (370)
|++.++.--.... ..+.... +-.+-.+|.+|++...+
T Consensus 138 d~~tG~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-------------------------------- 183 (238)
T PF13360_consen 138 DPKTGKLLWKYPV--GEPRGSSPISSFSDINGSPVISDGRVYVSSGDG-------------------------------- 183 (238)
T ss_dssp ETTTTEEEEEEES--STT-SS--EEEETTEEEEEECCTTEEEEECCTS--------------------------------
T ss_pred ecCCCcEEEEeec--CCCCCCcceeeecccccceEEECCEEEEEcCCC--------------------------------
Confidence 9765422111111 1110000 11122345788877654
Q ss_pred CceEEEEECC-CCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEeC
Q 017520 316 GGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 369 (370)
Q Consensus 316 ~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~~ 369 (370)
.++.+|. .|+.++... ..+ ........++.||+++ ....|..+++
T Consensus 184 ---~~~~~d~~tg~~~w~~~-~~~----~~~~~~~~~~~l~~~~-~~~~l~~~d~ 229 (238)
T PF13360_consen 184 ---RVVAVDLATGEKLWSKP-ISG----IYSLPSVDGGTLYVTS-SDGRLYALDL 229 (238)
T ss_dssp ---SEEEEETTTTEEEEEEC-SS-----ECECEECCCTEEEEEE-TTTEEEEEET
T ss_pred ---eEEEEECCCCCEEEEec-CCC----ccCCceeeCCEEEEEe-CCCEEEEEEC
Confidence 2566674 566554322 222 2233455678999999 7777777765
No 69
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.19 E-value=0.0025 Score=55.82 Aligned_cols=215 Identities=16% Similarity=0.203 Sum_probs=135.6
Q ss_pred cEEEEecCCeEEEEe-C------Ce-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCC--eEEEEeecCCc
Q 017520 91 VIYTATRDGWIKRLQ-D------GT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSYVNGS 158 (370)
Q Consensus 91 ~l~v~~~~g~I~~~~-~------g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g--~~~~~~~~~g~ 158 (370)
.++-++.+..+..++ + |. .+.+....-... +++..+||+..++....+..++. .+| .+.+....
T Consensus 30 ~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~-dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~--- 105 (315)
T KOG0279|consen 30 ILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVS-DVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHT--- 105 (315)
T ss_pred eEEEcccceEEEEEEeccCccccCceeeeeeccceEec-ceEEccCCceEEeccccceEEEEEecCCcEEEEEEecC---
Confidence 344555777777776 2 22 223333333455 78888999988876666766665 566 34443321
Q ss_pred ccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC--CCCccceEEccCC-CEEEE
Q 017520 159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDE-DYVVV 235 (370)
Q Consensus 159 ~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~p~gi~~~~dg-~~l~v 235 (370)
..+-.+++++|.+-.++-+ .+..+..+|..++..-....+ -...+.+.|+|.. +-+++
T Consensus 106 --~dVlsva~s~dn~qivSGS-----------------rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 106 --KDVLSVAFSTDNRQIVSGS-----------------RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred --CceEEEEecCCCceeecCC-----------------CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 3466789999987777744 345677788764443333333 2345678899986 33444
Q ss_pred EeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCcccccccc
Q 017520 236 CESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFIT 313 (370)
Q Consensus 236 ~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (370)
+.... |..+|+.+-+. ...+. ...++.+-+++++||.+-+.-..
T Consensus 167 s~s~DktvKvWnl~~~~l--~~~~~-gh~~~v~t~~vSpDGslcasGgk------------------------------- 212 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQL--RTTFI-GHSGYVNTVTVSPDGSLCASGGK------------------------------- 212 (315)
T ss_pred EccCCceEEEEccCCcch--hhccc-cccccEEEEEECCCCCEEecCCC-------------------------------
Confidence 43333 77777765432 22232 34556777899999998877322
Q ss_pred CCCceEEEEEC-CCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEeCC
Q 017520 314 LGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 370 (370)
Q Consensus 314 ~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~~~ 370 (370)
.|.++..| .+++-++++... ..+.++.+..++.|+.-..++.|.+.+++
T Consensus 213 ---dg~~~LwdL~~~k~lysl~a~-----~~v~sl~fspnrywL~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 213 ---DGEAMLWDLNEGKNLYSLEAF-----DIVNSLCFSPNRYWLCAATATSIKIWDLE 262 (315)
T ss_pred ---CceEEEEEccCCceeEeccCC-----CeEeeEEecCCceeEeeccCCceEEEecc
Confidence 24556666 457777766543 36788888889999999999999888764
No 70
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.17 E-value=0.00025 Score=60.99 Aligned_cols=208 Identities=15% Similarity=0.109 Sum_probs=126.4
Q ss_pred cCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecCCcccccccceEEcCC
Q 017520 97 RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 171 (370)
Q Consensus 97 ~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~ 171 (370)
.|..|.-|. +|. ..++....+..+ .+.+.+|+..+.+.....|..|| .++ -..+.. +++. -+.+..+.|..+
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVN-rLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t-~e~h-~kNVtaVgF~~d 94 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVN-RLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVAT-FEGH-TKNVTAVGFQCD 94 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCcccee-eEEEcCCcchhhhccCCeeEEEEccCCCCCceeE-Eecc-CCceEEEEEeec
Confidence 677777777 675 455666777888 99999999877776666677777 433 111211 1221 145667788889
Q ss_pred CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCC
Q 017520 172 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGER 250 (370)
Q Consensus 172 G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~ 250 (370)
|+-..+.+ .+|.+-.+|...-..........-.|.+.+.|....|++++..+ |+++|+....
T Consensus 95 grWMyTgs-----------------eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 95 GRWMYTGS-----------------EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS 157 (311)
T ss_pred CeEEEecC-----------------CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc
Confidence 98555533 45777778876544443333334458899999988899999888 9999986531
Q ss_pred CCceeeeccCCCCCCCceeECCCCCEEEEEecCch-hHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcE
Q 017520 251 KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDA-RRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTI 329 (370)
Q Consensus 251 ~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~ 329 (370)
- .+..+....-....+++++||...++.+...+ -.++.+... ....+ ..+..+..+..|+.-.+++|+++.
T Consensus 158 c--~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~-----~~s~l-~P~~k~~ah~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 158 C--THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ-----TASEL-EPVHKFQAHNGHILRCLLSPDVKY 229 (311)
T ss_pred c--ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC-----ccccc-eEhhheecccceEEEEEECCCCcE
Confidence 1 11122111112345778888887777654332 222222210 00000 011123457788888888999988
Q ss_pred EEE
Q 017520 330 IRN 332 (370)
Q Consensus 330 ~~~ 332 (370)
+..
T Consensus 230 lat 232 (311)
T KOG0315|consen 230 LAT 232 (311)
T ss_pred EEe
Confidence 774
No 71
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.16 E-value=0.0016 Score=60.67 Aligned_cols=174 Identities=14% Similarity=0.146 Sum_probs=94.3
Q ss_pred CCcceEEcCCC-cEEEEe--cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEE--EcCCC-eEEE
Q 017520 80 HPEDASMDKNG-VIYTAT--RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHK--VSEDG-VENF 151 (370)
Q Consensus 80 ~P~~i~~d~~G-~l~v~~--~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~--~~~~g-~~~~ 151 (370)
.|+.+++++|| .||+.+ .+..|..+| .+++..-....+... .+...++.....|- +..... ++.+| ...-
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-vy~t~e~~~~~~~~-Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-IFPTANDTFFMHCR-DGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-EEEecCCccEEEee-cCceEEEEecCCCceEEe
Confidence 45599999998 589888 378899999 666544333344333 34443333443332 233333 33445 2211
Q ss_pred Eee-cCC---cccccccceEEcC-CCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE------ecC--
Q 017520 152 LSY-VNG---SKLRFANDVVEAS-DGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV------ADG-- 217 (370)
Q Consensus 152 ~~~-~~g---~~~~~~~~l~~d~-~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~------~~~-- 217 (370)
... +.+ .-+..| .+.+ +|+ +|++. .|.|+.+|..+...... ...
T Consensus 184 ~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~-------------------eG~V~~id~~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR02658 184 PTEVFHPEDEYLINHP---AYSNKSGRLVWPTY-------------------TGKIFQIDLSSGDAKFLPAIEAFTEAEK 241 (352)
T ss_pred eeeeecCCccccccCC---ceEcCCCcEEEEec-------------------CCeEEEEecCCCcceecceeeecccccc
Confidence 111 111 111223 2233 665 55552 27899998543322211 111
Q ss_pred --CCCccc---eEEccCCCEEEEEe----------CCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEE
Q 017520 218 --FYFANG---VALSRDEDYVVVCE----------SWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI 280 (370)
Q Consensus 218 --~~~p~g---i~~~~dg~~l~v~~----------~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~ 280 (370)
...|.| +++++|++.+||.. .++ |+++|..+.+ ..... .....|.++++++||+ +.+.+
T Consensus 242 ~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k---vi~~i-~vG~~~~~iavS~Dgkp~lyvt 317 (352)
T TIGR02658 242 ADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK---RLRKI-ELGHEIDSINVSQDAKPLLYAL 317 (352)
T ss_pred ccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe---EEEEE-eCCCceeeEEECCCCCeEEEEe
Confidence 123545 99999999999953 113 9999976542 21111 1233588999999998 44444
Q ss_pred e
Q 017520 281 I 281 (370)
Q Consensus 281 ~ 281 (370)
+
T Consensus 318 n 318 (352)
T TIGR02658 318 S 318 (352)
T ss_pred C
Confidence 4
No 72
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.16 E-value=0.00024 Score=68.14 Aligned_cols=107 Identities=21% Similarity=0.299 Sum_probs=70.8
Q ss_pred cccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe--------cCCCCccceEEccC--
Q 017520 160 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--------DGFYFANGVALSRD-- 229 (370)
Q Consensus 160 ~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--------~~~~~p~gi~~~~d-- 229 (370)
+..|.+|++.+||++||+.. ..|+|+++++.++..+.+. .+.....||+++||
T Consensus 29 L~~Pw~maflPDG~llVtER-----------------~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~ 91 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTER-----------------ATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFM 91 (454)
T ss_pred CCCceEEEEcCCCeEEEEEe-----------------cCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCcc
Confidence 46899999999999999964 2488999987655433221 12345578999876
Q ss_pred ----CCEEEEEeC----------Cc-EEEEEeCCC--CCCceeeeccCCCC----CCCceeECCCCCEEEEEecC
Q 017520 230 ----EDYVVVCES----------WK-CRKYWLKGE--RKGKLETFAENLPG----APDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 230 ----g~~l~v~~~----------~~-l~~~~~~~~--~~~~~~~~~~~~~g----~p~~i~~d~~G~lwv~~~~~ 283 (370)
++++|++.+ .. |.||.++.. .....+.+....|. .-..|++++||.|||++...
T Consensus 92 ~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 92 QEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 357999851 22 888887532 23333333333332 12348899999999998765
No 73
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.15 E-value=0.0035 Score=60.83 Aligned_cols=131 Identities=16% Similarity=0.149 Sum_probs=79.8
Q ss_pred ceEEcCCCc-EEEEeCC---CceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccc
Q 017520 122 GLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILE 194 (370)
Q Consensus 122 gl~~d~~G~-L~v~~~~---~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~ 194 (370)
+.++++||+ |+.+... ..|+.++ .+| .+.+.. ..+ ......+++||+ |+++.+.
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-~~g----~~~~~~~SpDG~~l~~~~s~-------------- 268 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS-FRG----INGAPSFSPDGRRLALTLSR-------------- 268 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-CCC----CccCceECCCCCEEEEEEeC--------------
Confidence 778889996 5444432 2488888 556 444432 122 223568999995 6665321
Q ss_pred cCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC-Cc---EEEEEeCCCCCCceeeeccCCCCCCCceeE
Q 017520 195 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-WK---CRKYWLKGERKGKLETFAENLPGAPDNINL 270 (370)
Q Consensus 195 ~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~-~~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~ 270 (370)
.....|+.+|.++++.+.+..........++++||+.++++.. .+ |+++++++.. .+.+. ..........+
T Consensus 269 -~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---~~~lt-~~g~~~~~~~~ 343 (433)
T PRK04922 269 -DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---AERLT-FQGNYNARASV 343 (433)
T ss_pred -CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEee-cCCCCccCEEE
Confidence 1234799999988887765544333456799999998776643 32 8888876542 22222 11223345788
Q ss_pred CCCCCE
Q 017520 271 APDGTF 276 (370)
Q Consensus 271 d~~G~l 276 (370)
++||+.
T Consensus 344 SpDG~~ 349 (433)
T PRK04922 344 SPDGKK 349 (433)
T ss_pred CCCCCE
Confidence 888863
No 74
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.12 E-value=0.0049 Score=59.67 Aligned_cols=152 Identities=11% Similarity=0.060 Sum_probs=85.1
Q ss_pred eEEEEe-CCeE-EEEEecCCCceeceEEcCCCc-EEEEeCCC---ceEEEc-CCC-eEEEEeecCCcccccccceEEcCC
Q 017520 100 WIKRLQ-DGTW-VNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 171 (370)
Q Consensus 100 ~I~~~~-~g~~-~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~---gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~ 171 (370)
+|+.++ +|.. +.+........ ..+++|||+ |+.+.... .|+.++ .+| .+.+.. ..+ .....+++||
T Consensus 177 ~L~~~D~dG~~~~~l~~~~~~v~-~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD 250 (427)
T PRK02889 177 QLQISDADGQNAQSALSSPEPII-SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-FKG----SNSAPAWSPD 250 (427)
T ss_pred EEEEECCCCCCceEeccCCCCcc-cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCC
Confidence 455555 4432 22222223334 788999996 44443322 388888 566 444432 122 2346789999
Q ss_pred Cc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC-Cc---EEEEEe
Q 017520 172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-WK---CRKYWL 246 (370)
Q Consensus 172 G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~-~~---l~~~~~ 246 (370)
|+ |+++... .....||.+|.+++..+.+...........+++||+.++++.. .+ |++++.
T Consensus 251 G~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 251 GRTLAVALSR---------------DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA 315 (427)
T ss_pred CCEEEEEEcc---------------CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC
Confidence 95 6665321 1335799999887766655433223345789999998776543 33 788876
Q ss_pred CCCCCCceeeeccCCCCCCCceeECCCCCE
Q 017520 247 KGERKGKLETFAENLPGAPDNINLAPDGTF 276 (370)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l 276 (370)
++.. .+.... .........+++||+.
T Consensus 316 ~~g~---~~~lt~-~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 316 SGGA---AQRVTF-TGSYNTSPRISPDGKL 341 (427)
T ss_pred CCCc---eEEEec-CCCCcCceEECCCCCE
Confidence 6532 222221 1122334678888863
No 75
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.11 E-value=2.3e-05 Score=57.03 Aligned_cols=81 Identities=33% Similarity=0.450 Sum_probs=54.7
Q ss_pred cceEEcCCCcEEEEeCCCCCC-CccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc--
Q 017520 164 NDVVEASDGSLYFTVSSSKYL-PHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-- 240 (370)
Q Consensus 164 ~~l~~d~~G~l~v~d~~~~~~-~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-- 240 (370)
|+|+.-...++|+|+....-. +....+..+ ..+-+.|..||+ ++++.++.++.+||||++++|++.|||++..+
T Consensus 1 NDIvavG~~sFy~TNDhyf~~~~l~~lE~~l-~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~ 77 (86)
T PF01731_consen 1 NDIVAVGPDSFYVTNDHYFTDPFLRLLETYL-GLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLAHS 77 (86)
T ss_pred CCEEEECcCcEEEECchhhCcHHHHHHHHHh-cCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccCCe
Confidence 355444456788886531100 111112222 234567888998 46778899999999999999999999999876
Q ss_pred EEEEEeC
Q 017520 241 CRKYWLK 247 (370)
Q Consensus 241 l~~~~~~ 247 (370)
|.+|..+
T Consensus 78 I~vy~~~ 84 (86)
T PF01731_consen 78 IHVYKRH 84 (86)
T ss_pred EEEEEec
Confidence 8888643
No 76
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.10 E-value=0.00084 Score=66.09 Aligned_cols=146 Identities=14% Similarity=0.137 Sum_probs=94.6
Q ss_pred CCcceEEcCCCcEEEEe-cCCeEEEEe--C-CeEEEEEecCCCceeceEEcCCCcEEEEeCCC--ceEEEc-CCC-eEEE
Q 017520 80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--D-GTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN--GLHKVS-EDG-VENF 151 (370)
Q Consensus 80 ~P~~i~~d~~G~l~v~~-~~g~I~~~~--~-g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~--gi~~~~-~~g-~~~~ 151 (370)
+-..+.+...|+..+.. -||.|..|| . ..++++..+......++++|+.|.|.++.... .|+.++ ++| +..+
T Consensus 394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI 473 (893)
T ss_pred ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence 44456666666655444 788888888 2 24666654443333389999999988875443 577777 788 3322
Q ss_pred EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeC--CCCeEEEEecCCCCccceEEccC
Q 017520 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP--SSNITTLVADGFYFANGVALSRD 229 (370)
Q Consensus 152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~--~t~~~~~~~~~~~~p~gi~~~~d 229 (370)
. .|.. .-+..+.++++|.+.++-+ .+.+|..||. ..++++.+. --...-++++.||
T Consensus 474 L---sGHE-gPVs~l~f~~~~~~LaS~S-----------------WDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 474 L---SGHE-GPVSGLSFSPDGSLLASGS-----------------WDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPD 531 (893)
T ss_pred h---cCCC-CcceeeEEccccCeEEecc-----------------ccceEEEEEeeccCceeeeEe-eccceeEEEEcCC
Confidence 2 2221 2467889999999777754 2345655553 334555442 2234568899999
Q ss_pred CCEEEEEeCCc-EEEEEeC
Q 017520 230 EDYVVVCESWK-CRKYWLK 247 (370)
Q Consensus 230 g~~l~v~~~~~-l~~~~~~ 247 (370)
|+.+-|+...+ |..||.+
T Consensus 532 G~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 532 GKELAVATLDGQITFFDIK 550 (893)
T ss_pred CCeEEEEEecceEEEEEhh
Confidence 99999999988 8878764
No 77
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.08 E-value=0.0038 Score=61.53 Aligned_cols=250 Identities=12% Similarity=0.023 Sum_probs=126.1
Q ss_pred CCcEEEEecCCeEEEEe--CCeEEEEEecCCC------ceeceEEcCCCcEEEEeC---------CCceEEEc-CCC-eE
Q 017520 89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ------TLVGLTSTKEGHLIICDN---------ANGLHKVS-EDG-VE 149 (370)
Q Consensus 89 ~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~------p~~gl~~d~~G~L~v~~~---------~~gi~~~~-~~g-~~ 149 (370)
++.+|+++.+|.|+.+| +|+.......... ...+..+. ++.+|++.. ...++.+| .+| ..
T Consensus 110 ~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 110 PRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 38999999999999999 7876544332221 11134444 477888752 24588899 678 33
Q ss_pred EEEeecCCc----cc-------------ccccceEEcC-CCcEEEEeCCCC-CCCccceecccccCCCceEEEEeCCCCe
Q 017520 150 NFLSYVNGS----KL-------------RFANDVVEAS-DGSLYFTVSSSK-YLPHEYCLDILEGKPHGQLLKYDPSSNI 210 (370)
Q Consensus 150 ~~~~~~~g~----~~-------------~~~~~l~~d~-~G~l~v~d~~~~-~~~~~~~~~~~~~~~~g~l~~~d~~t~~ 210 (370)
.-....... +. ......++|+ +|.+|+...... +...... ........+.|+.+|.++++
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~-~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRR-TPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCcc-CCCCCCceeeEEEEcCCCCC
Confidence 322211100 00 0112357775 578999865311 0000000 00011224589999999887
Q ss_pred EEEEecCC-------CCccceEEc----cCCC---EEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC
Q 017520 211 TTLVADGF-------YFANGVALS----RDED---YVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 275 (370)
Q Consensus 211 ~~~~~~~~-------~~p~gi~~~----~dg~---~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~ 275 (370)
..-..... ..+....+. .+|+ .+|+....+ ++.+|.++.+. .+..... -.++..++ +.
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~----~W~~~~~--~~~~~~~~-~~ 340 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL----ISARPEV--EQPMAYDP-GL 340 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE----eeEeEee--ccccccCC-ce
Confidence 65432211 111111221 2343 466666666 99999765421 1110100 12244444 77
Q ss_pred EEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCc------cccceeEE
Q 017520 276 FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQL------MSFVTSGL 348 (370)
Q Consensus 276 lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~------~~~~t~~~ 348 (370)
+|++........ +..-.........|.+..+| .+|++++.+....... ....+...
T Consensus 341 vyv~~~~~~~~~-----------------~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~ 403 (488)
T cd00216 341 VYLGAFHIPLGL-----------------PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA 403 (488)
T ss_pred EEEccccccccC-----------------cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE
Confidence 888753210000 00000000133468899999 5799999886542110 01123445
Q ss_pred EECCEEEEEeCCCCeE
Q 017520 349 QVDNHLYVISLTSNFI 364 (370)
Q Consensus 349 ~~~g~L~~gs~~~~~i 364 (370)
..++.||+++..+...
T Consensus 404 ~~g~~v~~g~~dG~l~ 419 (488)
T cd00216 404 TAGNLVFAGAADGYFR 419 (488)
T ss_pred ecCCeEEEECCCCeEE
Confidence 5678899988665433
No 78
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.08 E-value=6.4e-05 Score=70.06 Aligned_cols=129 Identities=19% Similarity=0.265 Sum_probs=78.8
Q ss_pred ccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE-EEEe-------cCCCCccceEEccC---
Q 017520 161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVA-------DGFYFANGVALSRD--- 229 (370)
Q Consensus 161 ~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~-~~~~-------~~~~~p~gi~~~~d--- 229 (370)
+.|..|++.|||++||++. .|+|++++.+ +.. ..+. .+.....|++++++
T Consensus 2 ~~P~~~a~~pdG~l~v~e~------------------~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~ 62 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAER------------------SGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFAS 62 (331)
T ss_dssp SSEEEEEEETTSCEEEEET------------------TTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCC
T ss_pred CCceEEEEeCCCcEEEEeC------------------CceEEEEeCC-CcCcceecccccccccccCCcccceeccccCC
Confidence 4678999999999999964 4899999954 433 3222 12344578999984
Q ss_pred CCEEEEEeCC----------cEEEEEeCCC--CCCceeeeccCCCC------CCCceeECCCCCEEEEEecCchhHHHhh
Q 017520 230 EDYVVVCESW----------KCRKYWLKGE--RKGKLETFAENLPG------APDNINLAPDGTFWIAIIKLDARRMKIL 291 (370)
Q Consensus 230 g~~l~v~~~~----------~l~~~~~~~~--~~~~~~~~~~~~~g------~p~~i~~d~~G~lwv~~~~~~~~~~~~~ 291 (370)
+..+|+..+. .|.||..+.. .....+.+....+. ....|++++||.||++.....+. -.
T Consensus 63 n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~---~~ 139 (331)
T PF07995_consen 63 NGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND---DN 139 (331)
T ss_dssp C-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG---GG
T ss_pred CCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc---cc
Confidence 4568888772 1888877654 22233333222221 12348999999999998765320 00
Q ss_pred hcchhHHHHHHhCCccccccccCCCceEEEEECCCCcE
Q 017520 292 NSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTI 329 (370)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~ 329 (370)
.. ......|.|++++++|++
T Consensus 140 ~~------------------~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 140 AQ------------------DPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp GC------------------STTSSTTEEEEEETTSSB
T ss_pred cc------------------ccccccceEEEecccCcC
Confidence 00 014446889999999874
No 79
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.07 E-value=0.0024 Score=62.32 Aligned_cols=151 Identities=15% Similarity=0.238 Sum_probs=104.4
Q ss_pred CCcCCCcceEEcCCCcEE-EEecCCeEEEEe---CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCC-
Q 017520 76 GSVNHPEDASMDKNGVIY-TATRDGWIKRLQ---DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG- 147 (370)
Q Consensus 76 ~~~~~P~~i~~d~~G~l~-v~~~~g~I~~~~---~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g- 147 (370)
+....-.++++.++|... .++.|+.|..|+ ++. .+++.......+ +++|.++|++++.....+.+++. ++|
T Consensus 201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-~~~f~p~g~~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-SVAFSPDGNLLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE-EEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence 334456778888999644 444788888888 334 455555566677 99999999888876665655554 566
Q ss_pred -eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE--EEecCCCCc---
Q 017520 148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT--LVADGFYFA--- 221 (370)
Q Consensus 148 -~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~--~~~~~~~~p--- 221 (370)
.+.+... ...+..+++.++|++.++.+ .++.|..||..++... ....+...+
T Consensus 280 ~~~~l~~h-----s~~is~~~f~~d~~~l~s~s-----------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 337 (456)
T KOG0266|consen 280 CVRKLKGH-----SDGISGLAFSPDGNLLVSAS-----------------YDGTIRVWDLETGSKLCLKLLSGAENSAPV 337 (456)
T ss_pred EEEeeecc-----CCceEEEEECCCCCEEEEcC-----------------CCccEEEEECCCCceeeeecccCCCCCCce
Confidence 4444322 13577889999998777753 3578999999988832 233333344
Q ss_pred cceEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520 222 NGVALSRDEDYVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 222 ~gi~~~~dg~~l~v~~~~~-l~~~~~~~~ 249 (370)
.-+.+++++++++....++ +..|++...
T Consensus 338 ~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 338 TSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred eEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 6788999999888888887 777777643
No 80
>PRK13684 Ycf48-like protein; Provisional
Probab=98.07 E-value=0.0036 Score=58.47 Aligned_cols=221 Identities=10% Similarity=0.101 Sum_probs=118.5
Q ss_pred ceEEcCCCcEEEEecCCeEEEEeC-C-eEEEEEe---cCCCceeceEEcCCCcEEEEeCCCceEEEcCCC--eEEEEeec
Q 017520 83 DASMDKNGVIYTATRDGWIKRLQD-G-TWVNWKF---IDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYV 155 (370)
Q Consensus 83 ~i~~d~~G~l~v~~~~g~I~~~~~-g-~~~~~~~---~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~~~~~~ 155 (370)
+|+++. +..|++...|.|++-.| | +++.... ..+.+. .+....++.+|++...++|++-+..| ++.+....
T Consensus 94 ~v~~~~-~~~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~ 171 (334)
T PRK13684 94 SISFKG-DEGWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSPY-LITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDA 171 (334)
T ss_pred eeEEcC-CcEEEeCCCceEEEECCCCCCCeEccCCcCCCCCce-EEEEECCCcceeeeccceEEEECCCCCCceeCcCCC
Confidence 455553 34676666677877763 3 3554421 223455 55444456677776555677766555 55443222
Q ss_pred CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEE-eCCCCeEEEEec-CCCCccceEEccCCCEE
Q 017520 156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY-DPSSNITTLVAD-GFYFANGVALSRDEDYV 233 (370)
Q Consensus 156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~t~~~~~~~~-~~~~p~gi~~~~dg~~l 233 (370)
...+++++++++|.+++... .|.+++- |..+..++.+.. .....+++++.++++ +
T Consensus 172 ----~g~~~~i~~~~~g~~v~~g~------------------~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~ 228 (334)
T PRK13684 172 ----AGVVRNLRRSPDGKYVAVSS------------------RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-L 228 (334)
T ss_pred ----cceEEEEEECCCCeEEEEeC------------------CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-E
Confidence 23677888888887665532 3566664 232233444332 234557888888888 5
Q ss_pred EEEeCCcEEEE-EeCCCCCCceeeeccC-C-C-CCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCcccc
Q 017520 234 VVCESWKCRKY-WLKGERKGKLETFAEN-L-P-GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 309 (370)
Q Consensus 234 ~v~~~~~l~~~-~~~~~~~~~~~~~~~~-~-~-g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (370)
|+....+..++ ..++.. +.+..... . . .....+++.+++++|++...+
T Consensus 229 ~~vg~~G~~~~~s~d~G~--sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G-------------------------- 280 (334)
T PRK13684 229 WMLARGGQIRFNDPDDLE--SWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG-------------------------- 280 (334)
T ss_pred EEEecCCEEEEccCCCCC--ccccccCCccccccceeeEEEcCCCCEEEEcCCC--------------------------
Confidence 55555564444 233221 11111100 0 0 012346677788999986554
Q ss_pred ccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEE
Q 017520 310 QFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIG 365 (370)
Q Consensus 310 ~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~ 365 (370)
.++.-...|+..+......+........+...++++|+.+..+.-+.
T Consensus 281 ---------~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~ 327 (334)
T PRK13684 281 ---------TLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLR 327 (334)
T ss_pred ---------eEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEE
Confidence 35544455666665443334322233333344688999888776554
No 81
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.06 E-value=0.0024 Score=60.27 Aligned_cols=176 Identities=13% Similarity=0.119 Sum_probs=96.6
Q ss_pred CcceEEcCCCcEEEEecCCeEEEEe-CC-eE-EEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCCeEEEEeecCC
Q 017520 81 PEDASMDKNGVIYTATRDGWIKRLQ-DG-TW-VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNG 157 (370)
Q Consensus 81 P~~i~~d~~G~l~v~~~~g~I~~~~-~g-~~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g~~~~~~~~~g 157 (370)
.-++++.++|.+.+|+++|.|+.|+ ++ ++ +......+... ++..-.+|.|.-+..+..|..++.+ .+.+.+..-.
T Consensus 249 Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~-~L~~lr~GtllSGgKDRki~~Wd~~-y~k~r~~elP 326 (626)
T KOG2106|consen 249 VLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF-SLCMLRDGTLLSGGKDRKIILWDDN-YRKLRETELP 326 (626)
T ss_pred EEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE-EEEEecCccEeecCccceEEecccc-ccccccccCc
Confidence 3468888999999999999999999 33 22 22224455677 7888889999875544556666622 1111111011
Q ss_pred cccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEe
Q 017520 158 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE 237 (370)
Q Consensus 158 ~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~ 237 (370)
..+..+..++... +.|||+++. +.|+.=+.+.+-..........-=|++..++.+.+.-+.
T Consensus 327 e~~G~iRtv~e~~-~di~vGTtr------------------N~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~g 387 (626)
T KOG2106|consen 327 EQFGPIRTVAEGK-GDILVGTTR------------------NFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCG 387 (626)
T ss_pred hhcCCeeEEecCC-CcEEEeecc------------------ceEEEeeecCCceEEEEecccceeeEEcCCChhheeecc
Confidence 2234566666543 349999764 334443333222222222222445788888887455555
Q ss_pred CCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520 238 SWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 238 ~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~ 283 (370)
..+ +..++ +.+..-.+.+.+ | ..-..+++.|.+-+|+..+
T Consensus 388 qdk~v~lW~--~~k~~wt~~~~d--~--~~~~~fhpsg~va~Gt~~G 428 (626)
T KOG2106|consen 388 QDKHVRLWN--DHKLEWTKIIED--P--AECADFHPSGVVAVGTATG 428 (626)
T ss_pred CcceEEEcc--CCceeEEEEecC--c--eeEeeccCcceEEEeeccc
Confidence 555 44443 222221222221 1 1234566677677776665
No 82
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.002 Score=57.27 Aligned_cols=155 Identities=10% Similarity=0.067 Sum_probs=101.2
Q ss_pred ecCCCcCCCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCC-ceEEEc-C--
Q 017520 73 VGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-E-- 145 (370)
Q Consensus 73 ~~~~~~~~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~-gi~~~~-~-- 145 (370)
...|.-..-.+|.+.+-++.+++. .|..|..|| ..+-..+....++|. .|+||+|-+++..... .|..+| +
T Consensus 95 YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~ 172 (311)
T KOG1446|consen 95 YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRSF 172 (311)
T ss_pred EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEeccc
Confidence 334444445677777766777665 677788888 233333334455554 8999999988876554 566677 3
Q ss_pred -CC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec----CC
Q 017520 146 -DG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD----GF 218 (370)
Q Consensus 146 -~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~----~~ 218 (370)
.| ++.+.-.. ......++|.+++||+ |.+++. .+.++.+|.=+|.+..-.. ..
T Consensus 173 dkgPF~tf~i~~--~~~~ew~~l~FS~dGK~iLlsT~------------------~s~~~~lDAf~G~~~~tfs~~~~~~ 232 (311)
T KOG1446|consen 173 DKGPFTTFSITD--NDEAEWTDLEFSPDGKSILLSTN------------------ASFIYLLDAFDGTVKSTFSGYPNAG 232 (311)
T ss_pred CCCCceeEccCC--CCccceeeeEEcCCCCEEEEEeC------------------CCcEEEEEccCCcEeeeEeeccCCC
Confidence 35 66553221 2245678999999996 666654 3567778765565433222 23
Q ss_pred CCccceEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520 219 YFANGVALSRDEDYVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 219 ~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~ 249 (370)
..|-..+++||+++++.+...+ |..|+++.+
T Consensus 233 ~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 233 NLPLSATFTPDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred CcceeEEECCCCcEEEEecCCCcEEEEEcCCC
Confidence 3455778999999888888877 988988654
No 83
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.00 E-value=0.011 Score=56.81 Aligned_cols=156 Identities=15% Similarity=0.127 Sum_probs=89.6
Q ss_pred eEEEEe-CC-eEEEEEecCCCceeceEEcCCCc-EEEEeCC---CceEEEc-CCC-eEEEEeecCCcccccccceEEcCC
Q 017520 100 WIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 171 (370)
Q Consensus 100 ~I~~~~-~g-~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~---~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~ 171 (370)
.|+..+ +| ..+.+........ ..++++||+ |+.+... ..|+.++ .+| .+.+.. ..+ ....+++++|
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~-~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~~----~~~~~~~spD 244 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPIL-SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FPG----MNGAPAFSPD 244 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCcee-cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCC
Confidence 466666 44 3444443333345 778889997 4333322 2477777 566 444322 122 2345788999
Q ss_pred Cc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC-Cc---EEEEEe
Q 017520 172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-WK---CRKYWL 246 (370)
Q Consensus 172 G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~-~~---l~~~~~ 246 (370)
|+ |+++... .....|+.+|.+++..+.+...........+++||+.++++.. .+ |+++++
T Consensus 245 g~~l~~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 245 GSKLAVSLSK---------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred CCEEEEEECC---------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 95 7666431 1234699999987776655443333345688999997766543 33 888887
Q ss_pred CCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520 247 KGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 280 (370)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~ 280 (370)
++.+ ...+. ..........++++|+..+.+
T Consensus 310 ~~~~---~~~l~-~~~~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 310 DGGE---VRRLT-FRGGYNASPSWSPDGDLIAFV 339 (417)
T ss_pred CCCC---EEEee-cCCCCccCeEECCCCCEEEEE
Confidence 6542 22222 112234456788888644443
No 84
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.00 E-value=0.0011 Score=59.51 Aligned_cols=188 Identities=20% Similarity=0.203 Sum_probs=116.6
Q ss_pred cCCCcceEEcCCCcEEEEecCCeEEEE---e----CCeE-----EEEEe------cCCCceeceEEcCCCcEEEEeCC-C
Q 017520 78 VNHPEDASMDKNGVIYTATRDGWIKRL---Q----DGTW-----VNWKF------IDSQTLVGLTSTKEGHLIICDNA-N 138 (370)
Q Consensus 78 ~~~P~~i~~d~~G~l~v~~~~g~I~~~---~----~g~~-----~~~~~------~~~~p~~gl~~d~~G~L~v~~~~-~ 138 (370)
+..|=+++.++ ..||+++.. +|+++ + .++. .-|.+ ..-..+ .|++ .++.+|+.+.. +
T Consensus 48 F~r~MGl~~~~-~~l~~~t~~-qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiH-dia~-~~~~l~fVNT~fS 123 (335)
T TIGR03032 48 FPRPMGLAVSP-QSLTLGTRY-QLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAH-DLAL-GAGRLLFVNTLFS 123 (335)
T ss_pred cCccceeeeeC-CeEEEEEcc-eeEEcccccccccccccCCCCCeEEeeeeeeeccCcchh-heee-cCCcEEEEECcce
Confidence 56788888865 479999964 59998 3 1110 11111 112356 7888 57788887765 3
Q ss_pred ceEEEcCCC-eEEE-----EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE
Q 017520 139 GLHKVSEDG-VENF-----LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT 212 (370)
Q Consensus 139 gi~~~~~~g-~~~~-----~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~ 212 (370)
=+..++++- +... ++.....--=+.|+||.....--|+|.-+..-.. ....+...+|++. +|..+++
T Consensus 124 CLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~----~gWR~~~~~gG~v-idv~s~e-- 196 (335)
T TIGR03032 124 CLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVA----DGWREGRRDGGCV-IDIPSGE-- 196 (335)
T ss_pred eEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCc----ccccccccCCeEE-EEeCCCC--
Confidence 466666543 3322 2221111113688999965445788754321111 1122333455554 7777664
Q ss_pred EEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCc
Q 017520 213 LVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLD 284 (370)
Q Consensus 213 ~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~ 284 (370)
++.+++..|.+.-+. ||+ ||+++.+. +.++|.++ |+.+.+. ..||+|.|+.+. |+ ++|++...|
T Consensus 197 vl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~---G~~e~Va-~vpG~~rGL~f~--G~llvVgmSk~R 263 (335)
T TIGR03032 197 VVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQA---GKFQPVA-FLPGFTRGLAFA--GDFAFVGLSKLR 263 (335)
T ss_pred EEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCC---CcEEEEE-ECCCCCccccee--CCEEEEEecccc
Confidence 567899999998887 455 99999877 99999653 3566654 688999999998 65 668877766
No 85
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.00027 Score=62.84 Aligned_cols=151 Identities=17% Similarity=0.210 Sum_probs=93.3
Q ss_pred CCCcCCCcceEEcCCCcEE-EEecCCeEEEEe--CCeEEEEE---------ecCCCceeceEEcCCCcEEEEeCCCceEE
Q 017520 75 EGSVNHPEDASMDKNGVIY-TATRDGWIKRLQ--DGTWVNWK---------FIDSQTLVGLTSTKEGHLIICDNANGLHK 142 (370)
Q Consensus 75 ~~~~~~P~~i~~d~~G~l~-v~~~~g~I~~~~--~g~~~~~~---------~~~~~p~~gl~~d~~G~L~v~~~~~gi~~ 142 (370)
-|.-..+|+..+.+||.-. .|+.+|-|-.|+ +|++++-. -...... +|.|++|..+.......|-.+
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl-ci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL-CISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceE-EEeecccHHHhhccCcCCcEE
Confidence 3445689999999999644 556899898998 78755321 1223355 888988887777655555444
Q ss_pred Ec--CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEe-CCCCeEE-EEec
Q 017520 143 VS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD-PSSNITT-LVAD 216 (370)
Q Consensus 143 ~~--~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d-~~t~~~~-~~~~ 216 (370)
+. .+| ++.+.. .....+..+.++.|+.-..+.+ . ....|+. .++|+.- .+..
T Consensus 289 vWri~tG~ClRrFdr----AHtkGvt~l~FSrD~SqiLS~s-----------------f-D~tvRiHGlKSGK~LKEfrG 346 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDR----AHTKGVTCLSFSRDNSQILSAS-----------------F-DQTVRIHGLKSGKCLKEFRG 346 (508)
T ss_pred EEEEecchHHHHhhh----hhccCeeEEEEccCcchhhccc-----------------c-cceEEEeccccchhHHHhcC
Confidence 43 455 443311 1123566788888875334432 1 2233333 3444432 2233
Q ss_pred CCCCccceEEccCCCEEEEEeCCc-EEEEEeCC
Q 017520 217 GFYFANGVALSRDEDYVVVCESWK-CRKYWLKG 248 (370)
Q Consensus 217 ~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~ 248 (370)
...+.|...+++||..++-+.+.+ |.+|+.++
T Consensus 347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred ccccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence 445778899999999998888888 77777543
No 86
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.98 E-value=0.0051 Score=54.65 Aligned_cols=190 Identities=14% Similarity=0.157 Sum_probs=106.9
Q ss_pred CCcCCCcceEEcCCC-cEEEEe-cCCeEEEEe-CCeEEEEEec--CCCceeceEEcCCCcEEEEeCC-CceEEEc--CCC
Q 017520 76 GSVNHPEDASMDKNG-VIYTAT-RDGWIKRLQ-DGTWVNWKFI--DSQTLVGLTSTKEGHLIICDNA-NGLHKVS--EDG 147 (370)
Q Consensus 76 ~~~~~P~~i~~d~~G-~l~v~~-~~g~I~~~~-~g~~~~~~~~--~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~--~~g 147 (370)
|...+-.+++.+++. .||..+ ..-.|..++ +|.+..-.+- ...|- +|..-.+|..-+++.. +.++.+. +++
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE-~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPE-TIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChh-HeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 334457789999755 566544 455688888 7875433221 23466 7777666666666655 3444444 443
Q ss_pred -eEEEEe-e--c--CCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC---
Q 017520 148 -VENFLS-Y--V--NGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--- 217 (370)
Q Consensus 148 -~~~~~~-~--~--~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--- 217 (370)
+..... . . .........+++.|+.+ ++||+-.. .--+|+.++........-...
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr----------------~P~~I~~~~~~~~~l~~~~~~~~~ 225 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER----------------NPIGIFEVTQSPSSLSVHASLDPT 225 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc----------------CCcEEEEEecCCcccccccccCcc
Confidence 221111 1 1 11123456789999865 79988542 223577776432222111100
Q ss_pred ------CCCccceEEccCCCEEEEEe-CCc-EEEEEeCCCCCCceee------eccCCCCCCCceeECCCCCEEEEEecC
Q 017520 218 ------FYFANGVALSRDEDYVVVCE-SWK-CRKYWLKGERKGKLET------FAENLPGAPDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 218 ------~~~p~gi~~~~dg~~l~v~~-~~~-l~~~~~~~~~~~~~~~------~~~~~~g~p~~i~~d~~G~lwv~~~~~ 283 (370)
+....|+.+++..+.++|-. ..+ |..++.+|...+.... +....| .+.|++.|.+|++||....+
T Consensus 226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dip-qaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 226 ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIP-QAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred cccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCC-CcceeEECCCCCEEEEecCC
Confidence 12346788887655565554 444 8889888763222111 111122 47899999999999998665
No 87
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.93 E-value=0.016 Score=55.08 Aligned_cols=182 Identities=15% Similarity=0.166 Sum_probs=104.8
Q ss_pred CCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEE-EEE---ecCCCceeceEEcCCCcEEE-EeCCCceEEEc-CCC--e
Q 017520 80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWV-NWK---FIDSQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG--V 148 (370)
Q Consensus 80 ~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~-~~~---~~~~~p~~gl~~d~~G~L~v-~~~~~gi~~~~-~~g--~ 148 (370)
.-.++-+.+||..+++. .||+|+.|| +|+.. .+. ...|..+ ++...||+.=++ +..+.-+..++ .++ .
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf-alsWsPDs~~~~T~SaDkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF-ALSWSPDSTQFLTVSADKTIKIWDVSTNSLV 270 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE-EEEECCCCceEEEecCCceEEEEEeeccceE
Confidence 35678888999999776 899999999 67543 332 2345677 888888886444 33333333333 222 2
Q ss_pred EEEEee--cCCc------------------------------------ccccccceEEcCCCcEEEEeCCCCCCCcccee
Q 017520 149 ENFLSY--VNGS------------------------------------KLRFANDVVEASDGSLYFTVSSSKYLPHEYCL 190 (370)
Q Consensus 149 ~~~~~~--~~g~------------------------------------~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~ 190 (370)
+.+... .... ....+..+++.+||.-.++-
T Consensus 271 ~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg------------ 338 (603)
T KOG0318|consen 271 STWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG------------ 338 (603)
T ss_pred EEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee------------
Confidence 222100 0000 01234445566665433332
Q ss_pred cccccCCCceEEEEeCCCCeEEEEecC--CCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCc
Q 017520 191 DILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDN 267 (370)
Q Consensus 191 ~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~ 267 (370)
.-+|.|..++..++....+... -....+++.+..+. ++...... |.++++.+......+.+ .++..|.+
T Consensus 339 -----syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~~--~lg~QP~~ 410 (603)
T KOG0318|consen 339 -----SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSEVV--KLGSQPKG 410 (603)
T ss_pred -----ccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEEecCCeEEEEecccCccccccee--ecCCCcee
Confidence 2457888888876665544322 22345666665555 78888777 99998866533222222 34456889
Q ss_pred eeECCCCCEEEEEec
Q 017520 268 INLAPDGTFWIAIIK 282 (370)
Q Consensus 268 i~~d~~G~lwv~~~~ 282 (370)
++..++|.+-+....
T Consensus 411 lav~~d~~~avv~~~ 425 (603)
T KOG0318|consen 411 LAVLSDGGTAVVACI 425 (603)
T ss_pred EEEcCCCCEEEEEec
Confidence 999999865554433
No 88
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.92 E-value=0.014 Score=56.39 Aligned_cols=171 Identities=15% Similarity=0.112 Sum_probs=95.3
Q ss_pred EEcCCCc----EEEEec--CCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC---CceEE--Ec-CC---
Q 017520 85 SMDKNGV----IYTATR--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHK--VS-ED--- 146 (370)
Q Consensus 85 ~~d~~G~----l~v~~~--~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~---~gi~~--~~-~~--- 146 (370)
.+.+||. +|+... ...|+..+ +|+.+.+....+... ..+++|||+ |...... ..++. ++ +.
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL-MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc-ceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 6778874 345553 34688888 566666555555555 788999995 4433321 13444 33 22
Q ss_pred C-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCC--CCeEEEEecCCCCcc
Q 017520 147 G-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SNITTLVADGFYFAN 222 (370)
Q Consensus 147 g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--t~~~~~~~~~~~~p~ 222 (370)
| .+.+..... ......+++|||+ |+++... .....||+++.+ ++..+.+........
T Consensus 270 g~~~~lt~~~~----~~~~~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~~ 330 (428)
T PRK01029 270 GKPRRLLNEAF----GTQGNPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNSS 330 (428)
T ss_pred CcceEeecCCC----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCcc
Confidence 3 333322111 1223568999996 6665321 122468888754 233343333323345
Q ss_pred ceEEccCCCEEEEEeCC-c---EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEE
Q 017520 223 GVALSRDEDYVVVCESW-K---CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIA 279 (370)
Q Consensus 223 gi~~~~dg~~l~v~~~~-~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~ 279 (370)
...++|||+.++++... + |+++++++. +.+.+... +....+...++||+ |++.
T Consensus 331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g---~~~~Lt~~-~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATG---RDYQLTTS-PENKESPSWAIDSLHLVYS 388 (428)
T ss_pred ceeECCCCCEEEEEEcCCCCcEEEEEECCCC---CeEEccCC-CCCccceEECCCCCEEEEE
Confidence 67899999988776543 2 899998764 23333322 22345677888886 4433
No 89
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.92 E-value=0.015 Score=56.31 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=85.8
Q ss_pred EEEEe-CCe-EEEEEecCCCceeceEEcCCCc-E-EEEeCC--CceEEEc-CCC-eEEEEeecCCcccccccceEEcCCC
Q 017520 101 IKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH-L-IICDNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDG 172 (370)
Q Consensus 101 I~~~~-~g~-~~~~~~~~~~p~~gl~~d~~G~-L-~v~~~~--~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G 172 (370)
|+..+ +|. .+.+........ ...+++||+ | |+.... ..|+.++ .+| .+.+.. ..+ .....+++|||
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~-~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~~g----~~~~~~~SpDG 254 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPIL-SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-FEG----LNGAPAWSPDG 254 (430)
T ss_pred EEEECCCCCCceEEecCCCcee-eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-CCC----CcCCeEECCCC
Confidence 44445 443 333333333334 778899996 4 443322 2488888 556 544422 122 22357889999
Q ss_pred c-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC-Cc---EEEEEeC
Q 017520 173 S-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-WK---CRKYWLK 247 (370)
Q Consensus 173 ~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~-~~---l~~~~~~ 247 (370)
+ |+++... .....||++|.++++.+.+...........+++||+.++++.. .+ |++++++
T Consensus 255 ~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~ 319 (430)
T PRK00178 255 SKLAFVLSK---------------DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN 319 (430)
T ss_pred CEEEEEEcc---------------CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC
Confidence 5 6665321 1234799999998887765544334456789999998776643 32 8888876
Q ss_pred CCCCCceeeeccCCCCCCCceeECCCCCE
Q 017520 248 GERKGKLETFAENLPGAPDNINLAPDGTF 276 (370)
Q Consensus 248 ~~~~~~~~~~~~~~~g~p~~i~~d~~G~l 276 (370)
+.+ .+.+.. .........+++||+.
T Consensus 320 ~g~---~~~lt~-~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 320 GGR---AERVTF-VGNYNARPRLSADGKT 344 (430)
T ss_pred CCC---EEEeec-CCCCccceEECCCCCE
Confidence 542 222221 1112234567888863
No 90
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.88 E-value=0.013 Score=53.51 Aligned_cols=179 Identities=18% Similarity=0.209 Sum_probs=86.9
Q ss_pred CCcceEEcCCCcEEEEecCCeEEEEeC-C-eEEEEEecCCC----ceeceEEcCCCcEEEEeCCCceEEEcCCC--eEEE
Q 017520 80 HPEDASMDKNGVIYTATRDGWIKRLQD-G-TWVNWKFIDSQ----TLVGLTSTKEGHLIICDNANGLHKVSEDG--VENF 151 (370)
Q Consensus 80 ~P~~i~~d~~G~l~v~~~~g~I~~~~~-g-~~~~~~~~~~~----p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~~ 151 (370)
...+|++..+.+-|+....|.|++-.| | +++........ .+..+.++ +.+.||+.....+++-...| .+.+
T Consensus 18 ~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~-~~~g~ivG~~g~ll~T~DgG~tW~~v 96 (302)
T PF14870_consen 18 PLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFD-GNEGWIVGEPGLLLHTTDGGKTWERV 96 (302)
T ss_dssp -EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEEE-TTEEEEEEETTEEEEESSTTSS-EE-
T ss_pred ceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEec-CCceEEEcCCceEEEecCCCCCcEEe
Confidence 567788887677777666788888773 3 35544322221 12156665 35677765443344444445 5543
Q ss_pred E--eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEcc
Q 017520 152 L--SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSR 228 (370)
Q Consensus 152 ~--~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~ 228 (370)
. ...++ .+..+....++.+++... .|.||+-.-....++.+... ....+.+..++
T Consensus 97 ~l~~~lpg----s~~~i~~l~~~~~~l~~~------------------~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~ 154 (302)
T PF14870_consen 97 PLSSKLPG----SPFGITALGDGSAELAGD------------------RGAIYRTTDGGKTWQAVVSETSGSINDITRSS 154 (302)
T ss_dssp ---TT-SS-----EEEEEEEETTEEEEEET------------------T--EEEESSTTSSEEEEE-S----EEEEEE-T
T ss_pred ecCCCCCC----CeeEEEEcCCCcEEEEcC------------------CCcEEEeCCCCCCeeEcccCCcceeEeEEECC
Confidence 2 12233 333444444555555432 26677766554555554332 23345567788
Q ss_pred CCCEEEEEeCCcEEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520 229 DEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 229 dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~ 283 (370)
||+.+.|+..+++++-+-.+. ...+...........++.++++|++|+...++
T Consensus 155 dG~~vavs~~G~~~~s~~~G~--~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg 207 (302)
T PF14870_consen 155 DGRYVAVSSRGNFYSSWDPGQ--TTWQPHNRNSSRRIQSMGFSPDGNLWMLARGG 207 (302)
T ss_dssp TS-EEEEETTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS-EEEEETTT
T ss_pred CCcEEEEECcccEEEEecCCC--ccceEEccCccceehhceecCCCCEEEEeCCc
Confidence 999777777666655442332 12233322223345678899999999998765
No 91
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.87 E-value=0.012 Score=52.23 Aligned_cols=190 Identities=14% Similarity=0.160 Sum_probs=110.3
Q ss_pred ceEEcCCCcEEEEeCCC---ceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccC
Q 017520 122 GLTSTKEGHLIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 196 (370)
Q Consensus 122 gl~~d~~G~L~v~~~~~---gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~ 196 (370)
|+.+..+|.||.++... .|.+++ ++| +...... +. ..+-.++++- +++||.-+.
T Consensus 49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-~~--~~FgEGit~~-~d~l~qLTW----------------- 107 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-PP--RYFGEGITIL-GDKLYQLTW----------------- 107 (264)
T ss_dssp EEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--TT--T--EEEEEEE-TTEEEEEES-----------------
T ss_pred cEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-Cc--cccceeEEEE-CCEEEEEEe-----------------
Confidence 88887789999987654 477788 677 3332221 22 1355677775 457887765
Q ss_pred CCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCC-ceeeeccCCC-CCCCceeECCC
Q 017520 197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKG-KLETFAENLP-GAPDNINLAPD 273 (370)
Q Consensus 197 ~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~-~~~~~~~~~~-g~p~~i~~d~~ 273 (370)
.++..++||+++-+...-..- ...|--+..|++.||+++-.. |+.+|+++-+.. ...+..+..| ...+-+..- +
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y--~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~ 184 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPY--PGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N 184 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE---SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T
T ss_pred cCCeEEEEccccceEEEEEec--CCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c
Confidence 457899999986544322211 125555567888899998776 999997653221 1111111111 122334443 6
Q ss_pred CCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeC--------CCCCc---c
Q 017520 274 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVD--------PTGQL---M 341 (370)
Q Consensus 274 G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~--------~~g~~---~ 341 (370)
|.||.-.+.. ..|+++|+ .|+++..+.- .+... .
T Consensus 185 G~IyANVW~t----------------------------------d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~ 230 (264)
T PF05096_consen 185 GKIYANVWQT----------------------------------DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDD 230 (264)
T ss_dssp TEEEEEETTS----------------------------------SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TT
T ss_pred CEEEEEeCCC----------------------------------CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccC
Confidence 8999998875 46999997 5888876621 11110 1
Q ss_pred ccceeEEEE--CCEEEEEeCCCCeEEEEeC
Q 017520 342 SFVTSGLQV--DNHLYVISLTSNFIGKVQL 369 (370)
Q Consensus 342 ~~~t~~~~~--~g~L~~gs~~~~~i~~~~~ 369 (370)
+..-.++.+ .+++|+.+..=|.+-.++|
T Consensus 231 dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 231 DVLNGIAYDPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp S-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred CeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence 233455553 4899999999999988875
No 92
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.84 E-value=0.0063 Score=55.03 Aligned_cols=153 Identities=11% Similarity=0.100 Sum_probs=87.0
Q ss_pred eEEcCCCcEEEEe------cCCeEEEEe-CC---eEEEEEecCCCceeceEEcCCC-cEEEEeCC---------------
Q 017520 84 ASMDKNGVIYTAT------RDGWIKRLQ-DG---TWVNWKFIDSQTLVGLTSTKEG-HLIICDNA--------------- 137 (370)
Q Consensus 84 i~~d~~G~l~v~~------~~g~I~~~~-~g---~~~~~~~~~~~p~~gl~~d~~G-~L~v~~~~--------------- 137 (370)
-++++||++..++ ..|.|-.++ .. ++..|...+-.|+ -+.+.+|| +|.|++.+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-ELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-hEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 4667788655554 457788888 43 2444544555689 99999999 78888642
Q ss_pred ---CceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE
Q 017520 138 ---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT 212 (370)
Q Consensus 138 ---~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~ 212 (370)
..+..+| .+| +.......+.....++..|+++.+|.+|++... .-... ....-|..+... +..+
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~---qg~~~-------~~~PLva~~~~g-~~~~ 203 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQY---QGDPG-------DAPPLVALHRRG-GALR 203 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEec---CCCCC-------ccCCeEEEEcCC-Ccce
Confidence 1244444 444 221111112223457889999999999999642 11100 011224444433 2222
Q ss_pred EEec------CC-CCccceEEccCCCEEEEEeCCc--EEEEEeCC
Q 017520 213 LVAD------GF-YFANGVALSRDEDYVVVCESWK--CRKYWLKG 248 (370)
Q Consensus 213 ~~~~------~~-~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~ 248 (370)
.+.- .+ .....|+++.+++.+.++..-+ +..||..+
T Consensus 204 ~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 204 LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred eccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 2211 11 2345699999999777776544 66676544
No 93
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=0.0013 Score=61.18 Aligned_cols=180 Identities=12% Similarity=0.125 Sum_probs=108.2
Q ss_pred CcceEEcCCCc-EEEEecCCeEEEEe-CCeEEEEE---ecCCCceeceEEcCCCc-EEEEeCC-CceEEEc-CCC-eEEE
Q 017520 81 PEDASMDKNGV-IYTATRDGWIKRLQ-DGTWVNWK---FIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VENF 151 (370)
Q Consensus 81 P~~i~~d~~G~-l~v~~~~g~I~~~~-~g~~~~~~---~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~~g-~~~~ 151 (370)
-.+|-+-+.-- +.++..+|.+..|. +|+..... .-...|....+|.++|. ..++... .-++.+| .++ +..+
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~ 295 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL 295 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccc
Confidence 35566666443 45666777766666 66533221 12233443677888997 4444333 3467777 566 5544
Q ss_pred EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCC
Q 017520 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED 231 (370)
Q Consensus 152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~ 231 (370)
.. ..|.+..+...+.+++++++..... .+|-|+.+...|++...-..--....+++|++|++
T Consensus 296 ~~-~~g~e~~~~e~FeVShd~~fia~~G-----------------~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk 357 (514)
T KOG2055|consen 296 KP-PYGVEEKSMERFEVSHDSNFIAIAG-----------------NNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSK 357 (514)
T ss_pred cC-CCCcccchhheeEecCCCCeEEEcc-----------------cCceEEeehhhhhhhhheeeeccEEeeEEEecCCc
Confidence 32 2444456788889999998544433 34678888777665432211112345788999999
Q ss_pred EEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520 232 YVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 281 (370)
Q Consensus 232 ~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~ 281 (370)
.||++...+ |+++++...+ ....|.+.-.-.-.-+|.+.+|. |+++.
T Consensus 358 ~l~~~~~~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~ng~-ylA~G 405 (514)
T KOG2055|consen 358 ELLASGGTGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISLNGS-YLATG 405 (514)
T ss_pred EEEEEcCCceEEEEecCCcc--eEEEEeecCccceeeeeecCCCc-eEEec
Confidence 999998877 9999987652 23445432221233477788887 55553
No 94
>PTZ00421 coronin; Provisional
Probab=97.82 E-value=0.038 Score=54.32 Aligned_cols=146 Identities=15% Similarity=0.128 Sum_probs=88.4
Q ss_pred CCcceEEcC-CCc-EEEEecCCeEEEEe--CCe--------EEEEEecCCCceeceEEcCCC-cEEEEeCCCc-eEEEc-
Q 017520 80 HPEDASMDK-NGV-IYTATRDGWIKRLQ--DGT--------WVNWKFIDSQTLVGLTSTKEG-HLIICDNANG-LHKVS- 144 (370)
Q Consensus 80 ~P~~i~~d~-~G~-l~v~~~~g~I~~~~--~g~--------~~~~~~~~~~p~~gl~~d~~G-~L~v~~~~~g-i~~~~- 144 (370)
.-.++++++ +++ |..++.||.|..|+ ++. +..+........ .+++.+++ +++++....+ |..++
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-~l~f~P~~~~iLaSgs~DgtVrIWDl 155 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-IVSFHPSAMNVLASAGADMVVNVWDV 155 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE-EEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence 346788887 664 66677899999998 332 222333334556 89999875 5555443444 55555
Q ss_pred CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCC--C
Q 017520 145 EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY--F 220 (370)
Q Consensus 145 ~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~--~ 220 (370)
.++ ...+ .+. ...++.+++.++|++.++.+ .++.|..||+.+++......... .
T Consensus 156 ~tg~~~~~l----~~h-~~~V~sla~spdG~lLatgs-----------------~Dg~IrIwD~rsg~~v~tl~~H~~~~ 213 (493)
T PTZ00421 156 ERGKAVEVI----KCH-SDQITSLEWNLDGSLLCTTS-----------------KDKKLNIIDPRDGTIVSSVEAHASAK 213 (493)
T ss_pred CCCeEEEEE----cCC-CCceEEEEEECCCCEEEEec-----------------CCCEEEEEECCCCcEEEEEecCCCCc
Confidence 555 3322 111 13578899999998777754 45789999998766432222221 2
Q ss_pred ccceEEccCCCEEEEEeC----Cc-EEEEEeCC
Q 017520 221 ANGVALSRDEDYVVVCES----WK-CRKYWLKG 248 (370)
Q Consensus 221 p~gi~~~~dg~~l~v~~~----~~-l~~~~~~~ 248 (370)
...+.+.++++.++.+.. .+ |..||+..
T Consensus 214 ~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 214 SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 235667777775555432 23 88888754
No 95
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.82 E-value=0.018 Score=49.95 Aligned_cols=178 Identities=13% Similarity=0.118 Sum_probs=106.3
Q ss_pred cceEEcCCCcEEEEecCCeEEEEe--CCe---EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCC-eEEEEe
Q 017520 82 EDASMDKNGVIYTATRDGWIKRLQ--DGT---WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG-VENFLS 153 (370)
Q Consensus 82 ~~i~~d~~G~l~v~~~~g~I~~~~--~g~---~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g-~~~~~~ 153 (370)
..+.+.+++....+..+..|..|| .++ +..|........ .+.|..||+........|..++. +.- .+....
T Consensus 44 NrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVt-aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~ 122 (311)
T KOG0315|consen 44 NRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVT-AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ 122 (311)
T ss_pred eeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceE-EEEEeecCeEEEecCCCceEEEEeccCcccchhcc
Confidence 346677777666555555677777 332 344444445566 78888888754444456777766 221 111111
Q ss_pred ecCCcccccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE--EEecCCCCccceEEccCC
Q 017520 154 YVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT--LVADGFYFANGVALSRDE 230 (370)
Q Consensus 154 ~~~g~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~--~~~~~~~~p~gi~~~~dg 230 (370)
. ..-+|.++..|+ ++|+++|.+ |.|..+|....... .+.........+++.+||
T Consensus 123 ~-----~spVn~vvlhpnQteLis~dqs------------------g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg 179 (311)
T KOG0315|consen 123 H-----NSPVNTVVLHPNQTELISGDQS------------------GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG 179 (311)
T ss_pred C-----CCCcceEEecCCcceEEeecCC------------------CcEEEEEccCCccccccCCCCCcceeeEEEcCCC
Confidence 1 124688888875 578888754 78999998655332 223344556789999999
Q ss_pred CEEEEEeCCc-EEEEEeCCC-CCCceeeec--cCCCCCCCceeECCCCCEEEEEecC
Q 017520 231 DYVVVCESWK-CRKYWLKGE-RKGKLETFA--ENLPGAPDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 231 ~~l~v~~~~~-l~~~~~~~~-~~~~~~~~~--~~~~g~p~~i~~d~~G~lwv~~~~~ 283 (370)
..+..++..+ ++++++-+. .....+... ....++.--..+++|+.+.+++...
T Consensus 180 sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd 236 (311)
T KOG0315|consen 180 SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD 236 (311)
T ss_pred cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence 9777777666 888887543 122222221 1122333345578888777776554
No 96
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.79 E-value=0.0075 Score=57.20 Aligned_cols=139 Identities=18% Similarity=0.237 Sum_probs=80.2
Q ss_pred EEcCCCcEEEEecCCeEEEEe--CCeEEEEEec-C---CCceeceEEcCCCcEEEEeCCCceEEEcC-CC-eEEEEeecC
Q 017520 85 SMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFI-D---SQTLVGLTSTKEGHLIICDNANGLHKVSE-DG-VENFLSYVN 156 (370)
Q Consensus 85 ~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~-~---~~p~~gl~~d~~G~L~v~~~~~gi~~~~~-~g-~~~~~~~~~ 156 (370)
.++.+|.+|+++.+|.|+.++ +|+.. |... . .... +-.+..+|++|+++....++.++. +| ....... .
T Consensus 64 ~~~~dg~v~~~~~~G~i~A~d~~~g~~~-W~~~~~~~~~~~~-~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~-~ 140 (370)
T COG1520 64 PADGDGTVYVGTRDGNIFALNPDTGLVK-WSYPLLGAVAQLS-GPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNV-G 140 (370)
T ss_pred cEeeCCeEEEecCCCcEEEEeCCCCcEE-ecccCcCcceecc-CceEEeCCeEEEecccceEEEEECCCCcEEEEEec-C
Confidence 366789999999999999999 45433 3221 1 1222 333334899999987655999995 88 4433222 2
Q ss_pred CcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-----CCCCccceEEccCCC
Q 017520 157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----GFYFANGVALSRDED 231 (370)
Q Consensus 157 g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-----~~~~p~gi~~~~dg~ 231 (370)
+ . .....-++-.++.+|+.+. ++.++.+|.++++...... ......... ..++.
T Consensus 141 ~-~-~~~~~~~v~~~~~v~~~s~------------------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~ 199 (370)
T COG1520 141 G-S-PYYASPPVVGDGTVYVGTD------------------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGT 199 (370)
T ss_pred C-C-eEEecCcEEcCcEEEEecC------------------CCeEEEEEccCCcEEEEEecCCccccccccCce-eecce
Confidence 2 0 1111223445788888842 3678888888775532211 111112222 33444
Q ss_pred EEEEEeC--Cc-EEEEEeCC
Q 017520 232 YVVVCES--WK-CRKYWLKG 248 (370)
Q Consensus 232 ~l~v~~~--~~-l~~~~~~~ 248 (370)
+|+... .. ++.+++..
T Consensus 200 -vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 200 -VYVGSDGYDGILYALNAED 218 (370)
T ss_pred -EEEecCCCcceEEEEEccC
Confidence 777766 34 88888743
No 97
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.77 E-value=0.0055 Score=60.54 Aligned_cols=85 Identities=12% Similarity=0.042 Sum_probs=59.5
Q ss_pred ceEEEEeCCC-----CeEEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCC------CCceeeecc--CCCC
Q 017520 199 GQLLKYDPSS-----NITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGER------KGKLETFAE--NLPG 263 (370)
Q Consensus 199 g~l~~~d~~t-----~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~------~~~~~~~~~--~~~g 263 (370)
++|..+|..+ ..+..+..--..|.|+.++|||+.+|+++... +.++|+..-+ +.-...+.. ...-
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl 375 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL 375 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence 5788999876 34555556668999999999999999998765 9999976422 111111111 1222
Q ss_pred CCCceeECCCCCEEEEEecC
Q 017520 264 APDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 264 ~p~~i~~d~~G~lwv~~~~~ 283 (370)
.|--.++|.+|+.|++..-.
T Consensus 376 GPLHTaFDg~G~aytslf~d 395 (635)
T PRK02888 376 GPLHTAFDGRGNAYTTLFLD 395 (635)
T ss_pred CcceEEECCCCCEEEeEeec
Confidence 47778899999999998653
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.76 E-value=0.014 Score=54.33 Aligned_cols=185 Identities=15% Similarity=0.169 Sum_probs=109.7
Q ss_pred ceEEcCCCcEEEEeCCCceEEEc--CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCC
Q 017520 122 GLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 197 (370)
Q Consensus 122 gl~~d~~G~L~v~~~~~gi~~~~--~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~ 197 (370)
++...+.|.-++.....+-+.+. .+| +........+ -.....++.|||.|+.+-. .
T Consensus 308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~---v~~ts~~fHpDgLifgtgt-----------------~ 367 (506)
T KOG0289|consen 308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD---VEYTSAAFHPDGLIFGTGT-----------------P 367 (506)
T ss_pred eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc---ceeEEeeEcCCceEEeccC-----------------C
Confidence 78888889877766666777766 566 3333222111 1345779999999987743 4
Q ss_pred CceEEEEeCCCCeEEEEecCCCC-ccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC
Q 017520 198 HGQLLKYDPSSNITTLVADGFYF-ANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 275 (370)
Q Consensus 198 ~g~l~~~d~~t~~~~~~~~~~~~-p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~ 275 (370)
++.|-.||.+.+....-+.+... ...|.|+.+|-+|.++...+ |..||+... .++..+.-...-....+.+|..|.
T Consensus 368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl--~n~kt~~l~~~~~v~s~~fD~SGt 445 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL--KNFKTIQLDEKKEVNSLSFDQSGT 445 (506)
T ss_pred CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh--cccceeeccccccceeEEEcCCCC
Confidence 57777788765542222222222 24688888887666665556 999998543 344444211000144588999997
Q ss_pred EEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCC---cEEEEEeCCCCCccccceeEEEECC
Q 017520 276 FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDG---TIIRNLVDPTGQLMSFVTSGLQVDN 352 (370)
Q Consensus 276 lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g---~~~~~~~~~~g~~~~~~t~~~~~~g 352 (370)
+.+..... -.|+.+.... +.+..+++..|. .+.+.+.+.
T Consensus 446 ~L~~~g~~----------------------------------l~Vy~~~k~~k~W~~~~~~~~~sg~----st~v~Fg~~ 487 (506)
T KOG0289|consen 446 YLGIAGSD----------------------------------LQVYICKKKTKSWTEIKELADHSGL----STGVRFGEH 487 (506)
T ss_pred eEEeecce----------------------------------eEEEEEecccccceeeehhhhcccc----cceeeeccc
Confidence 66654221 2466666433 344455665543 566666666
Q ss_pred EEEEEeCCCCeEEE
Q 017520 353 HLYVISLTSNFIGK 366 (370)
Q Consensus 353 ~L~~gs~~~~~i~~ 366 (370)
.-|+++-....+.+
T Consensus 488 aq~l~s~smd~~l~ 501 (506)
T KOG0289|consen 488 AQYLASTSMDAILR 501 (506)
T ss_pred ceEEeeccchhheE
Confidence 67776665555433
No 99
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.75 E-value=0.0037 Score=59.02 Aligned_cols=177 Identities=11% Similarity=0.086 Sum_probs=107.3
Q ss_pred cCCCcceEEcCCCcEEEEecCCeEEEEe-CCeEEEE-EecCCCceeceEEcCCCcEEEEeCCCceEEEcC-CC--eEEEE
Q 017520 78 VNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNW-KFIDSQTLVGLTSTKEGHLIICDNANGLHKVSE-DG--VENFL 152 (370)
Q Consensus 78 ~~~P~~i~~d~~G~l~v~~~~g~I~~~~-~g~~~~~-~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~-~g--~~~~~ 152 (370)
+..++.|+... +.||+|+..+.|++=+ .+.+... ......-. |++..++.++|+.....+.+++.. .. +..+.
T Consensus 329 ~G~iRtv~e~~-~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw-gla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~ 406 (626)
T KOG2106|consen 329 FGPIRTVAEGK-GDILVGTTRNFILQGTLENGFTLTVQGHGDELW-GLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKII 406 (626)
T ss_pred cCCeeEEecCC-CcEEEeeccceEEEeeecCCceEEEEeccccee-eEEcCCChhheeeccCcceEEEccCCceeEEEEe
Confidence 44677777764 3499999777788766 3333222 22233556 999999999999876666666663 33 22222
Q ss_pred eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCE
Q 017520 153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY 232 (370)
Q Consensus 153 ~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~ 232 (370)
. .....++++|.|.+-++. ..|+.+.+|.++.....+-..-..-+.+.+++||.+
T Consensus 407 ~-------d~~~~~~fhpsg~va~Gt------------------~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~ 461 (626)
T KOG2106|consen 407 E-------DPAECADFHPSGVVAVGT------------------ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAF 461 (626)
T ss_pred c-------CceeEeeccCcceEEEee------------------ccceEEEEecccceeEEEEecCCceEEEEEcCCCCE
Confidence 1 134567888999666664 348889999887554444444334467899999999
Q ss_pred EEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520 233 VVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 282 (370)
Q Consensus 233 l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 282 (370)
+-++..++ |+.|.++.... ....+..-......-+-.+.|+++.++...
T Consensus 462 lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~ 511 (626)
T KOG2106|consen 462 LAVGSHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWSSDSQFLVSNSG 511 (626)
T ss_pred EEEecCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeecCCCceEEeccC
Confidence 88888887 77666654311 111111011112333445666666666443
No 100
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.74 E-value=0.027 Score=49.89 Aligned_cols=231 Identities=13% Similarity=0.103 Sum_probs=138.6
Q ss_pred EecCCCcCCCcceEEcCCCcE-EEEecCCeEEEEe---CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCc---eEEEc
Q 017520 72 KVGEGSVNHPEDASMDKNGVI-YTATRDGWIKRLQ---DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANG---LHKVS 144 (370)
Q Consensus 72 ~~~~~~~~~P~~i~~d~~G~l-~v~~~~g~I~~~~---~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~g---i~~~~ 144 (370)
++..|.+..-.++-...|.+. ..++.+|++..|| +.+..-+..+..-.. .-++.|.|++..+..-.. ||.+.
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVM-tCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVM-TCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEE-EEEECCCCCeEEecCcCceeEEEecc
Confidence 444566666666667676654 4556999999999 455555544555556 778999999887754433 55555
Q ss_pred -C--CC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CC
Q 017520 145 -E--DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FY 219 (370)
Q Consensus 145 -~--~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~ 219 (370)
+ +| .++ .....|.. .++....+-+|++|.-+ + ++.....+|.++++....+.+ ..
T Consensus 128 ~~d~~g~~~v-~r~l~gHt-gylScC~f~dD~~ilT~-S-----------------GD~TCalWDie~g~~~~~f~GH~g 187 (343)
T KOG0286|consen 128 TRDAEGNVRV-SRELAGHT-GYLSCCRFLDDNHILTG-S-----------------GDMTCALWDIETGQQTQVFHGHTG 187 (343)
T ss_pred ccccccccee-eeeecCcc-ceeEEEEEcCCCceEec-C-----------------CCceEEEEEcccceEEEEecCCcc
Confidence 3 34 222 12223321 34555566567776433 2 445677888888776555443 33
Q ss_pred CccceEEcc-CCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchh
Q 017520 220 FANGVALSR-DEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKL 296 (370)
Q Consensus 220 ~p~gi~~~~-dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~ 296 (370)
-.-++.++| +++ .|++.... -..+|+..+ .-.+.|. ....-.+.+++-++|.-+++....
T Consensus 188 DV~slsl~p~~~n-tFvSg~cD~~aklWD~R~~--~c~qtF~-ghesDINsv~ffP~G~afatGSDD------------- 250 (343)
T KOG0286|consen 188 DVMSLSLSPSDGN-TFVSGGCDKSAKLWDVRSG--QCVQTFE-GHESDINSVRFFPSGDAFATGSDD------------- 250 (343)
T ss_pred cEEEEecCCCCCC-eEEecccccceeeeeccCc--ceeEeec-ccccccceEEEccCCCeeeecCCC-------------
Confidence 456788888 888 77776655 666776543 2344443 333346668888888766664433
Q ss_pred HHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEE-CCEEEEEeCCCCe
Q 017520 297 IKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNF 363 (370)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~~~~~ 363 (370)
+..-.||- ..+.+..|.. +.. +..++++.+. .|+|.+.++...-
T Consensus 251 ---------------------~tcRlyDlRaD~~~a~ys~-~~~-~~gitSv~FS~SGRlLfagy~d~~ 296 (343)
T KOG0286|consen 251 ---------------------ATCRLYDLRADQELAVYSH-DSI-ICGITSVAFSKSGRLLFAGYDDFT 296 (343)
T ss_pred ---------------------ceeEEEeecCCcEEeeecc-Ccc-cCCceeEEEcccccEEEeeecCCc
Confidence 33556663 4677777764 333 3345566554 5887777655443
No 101
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.73 E-value=0.025 Score=54.78 Aligned_cols=149 Identities=14% Similarity=0.101 Sum_probs=83.7
Q ss_pred eEEEEe-CCe-EEEEEecCCCceeceEEcCCCc-EEEEeCC---CceEEEc-CCC-eEEEEeecCCcccccccceEEcCC
Q 017520 100 WIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 171 (370)
Q Consensus 100 ~I~~~~-~g~-~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~---~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~ 171 (370)
.|+.++ +|. ...+........ .+.+++||+ |..+... ..|+.++ .+| .+.+.. ..+ ....++++||
T Consensus 185 ~i~i~d~dg~~~~~lt~~~~~v~-~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g----~~~~~~wSPD 258 (429)
T PRK01742 185 EVRVADYDGFNQFIVNRSSQPLM-SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRG----HNGAPAFSPD 258 (429)
T ss_pred EEEEECCCCCCceEeccCCCccc-cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCC----ccCceeECCC
Confidence 455555 443 222222223345 789999996 4333322 2477787 556 444422 222 2235789999
Q ss_pred Cc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC-Cc---EEEEEe
Q 017520 172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-WK---CRKYWL 246 (370)
Q Consensus 172 G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~-~~---l~~~~~ 246 (370)
|+ |.++... .+.-.||.+|.+++..+.+..........++++||+.++++.. .+ |+.++.
T Consensus 259 G~~La~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 259 GSRLAFASSK---------------DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred CCEEEEEEec---------------CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 96 5555321 1223589999887777666544444567899999997776643 33 677665
Q ss_pred CCCCCCceeeeccCCCCCCCceeECCCCCE
Q 017520 247 KGERKGKLETFAENLPGAPDNINLAPDGTF 276 (370)
Q Consensus 247 ~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l 276 (370)
.+.. .+.+ . ..+ .+..+++||+.
T Consensus 324 ~~~~---~~~l-~-~~~--~~~~~SpDG~~ 346 (429)
T PRK01742 324 SGGG---ASLV-G-GRG--YSAQISADGKT 346 (429)
T ss_pred CCCC---eEEe-c-CCC--CCccCCCCCCE
Confidence 5431 2222 1 111 24556777764
No 102
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.71 E-value=0.013 Score=51.84 Aligned_cols=168 Identities=14% Similarity=0.111 Sum_probs=108.5
Q ss_pred ceEEcCCCcEEEEecCCeEEEEe--CCe-EEEEEecCCCceeceEEcC-CCcEEEEeCCCce-EEEc-CCC--eEEEEee
Q 017520 83 DASMDKNGVIYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTK-EGHLIICDNANGL-HKVS-EDG--VENFLSY 154 (370)
Q Consensus 83 ~i~~d~~G~l~v~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~-~G~L~v~~~~~gi-~~~~-~~g--~~~~~~~ 154 (370)
+.-+-.|+.|.+++.+....-|| .|. ...|....+... +|.+.| +++.||...-.+. ..+| +.+ ++.+...
T Consensus 150 cC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh 228 (343)
T KOG0286|consen 150 CCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH 228 (343)
T ss_pred EEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCeEEecccccceeeeeccCcceeEeeccc
Confidence 33344489999999998888888 564 566666777888 899988 8999997654444 4444 566 5555322
Q ss_pred cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCC-CeEEEEecC--CCCccceEEccCCC
Q 017520 155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLVADG--FYFANGVALSRDED 231 (370)
Q Consensus 155 ~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-~~~~~~~~~--~~~p~gi~~~~dg~ 231 (370)
...+|.+.+-|+|.-+.+-+ .++....||... .++.++... ....+.++|+..|+
T Consensus 229 -----esDINsv~ffP~G~afatGS-----------------DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR 286 (343)
T KOG0286|consen 229 -----ESDINSVRFFPSGDAFATGS-----------------DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR 286 (343)
T ss_pred -----ccccceEEEccCCCeeeecC-----------------CCceeEEEeecCCcEEeeeccCcccCCceeEEEccccc
Confidence 14688999999999888754 345555566543 344444322 33457899999999
Q ss_pred EEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCE
Q 017520 232 YVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF 276 (370)
Q Consensus 232 ~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l 276 (370)
.||..-... +.++|.-. +++........+....+.+.+||.-
T Consensus 287 lLfagy~d~~c~vWDtlk---~e~vg~L~GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 287 LLFAGYDDFTCNVWDTLK---GERVGVLAGHENRVSCLGVSPDGMA 329 (343)
T ss_pred EEEeeecCCceeEeeccc---cceEEEeeccCCeeEEEEECCCCcE
Confidence 666654444 88887421 2222222234445566778888853
No 103
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.68 E-value=0.024 Score=50.70 Aligned_cols=175 Identities=17% Similarity=0.060 Sum_probs=103.1
Q ss_pred CcceEEcCCCcEEEEe--cCCeEEEEe-CC--eEEEEEecCCCceeceEEcCCC---cEEEEeCCCceEEEcCCC-eEEE
Q 017520 81 PEDASMDKNGVIYTAT--RDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTSTKEG---HLIICDNANGLHKVSEDG-VENF 151 (370)
Q Consensus 81 P~~i~~d~~G~l~v~~--~~g~I~~~~-~g--~~~~~~~~~~~p~~gl~~d~~G---~L~v~~~~~gi~~~~~~g-~~~~ 151 (370)
-.++|++ | .|+++ .|..|..|| .. +...+....+... .+.|++.- .|.-+. ..|...+.+.| +..+
T Consensus 46 itavAVs--~-~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~shLlS~s-dDG~i~iw~~~~W~~~ 120 (362)
T KOG0294|consen 46 ITALAVS--G-PYVASGSSDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSHLLSGS-DDGHIIIWRVGSWELL 120 (362)
T ss_pred eeEEEec--c-eeEeccCCCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhheeeec-CCCcEEEEEcCCeEEe
Confidence 3456664 3 45544 788899999 32 3444555667777 88887554 455554 44555554444 4333
Q ss_pred EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCC
Q 017520 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED 231 (370)
Q Consensus 152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~ 231 (370)
.. ..+.. ..++++++.|.|+|=++.. .++.+..+|.-.++.-....--..+.-+.|++.|.
T Consensus 121 ~s-lK~H~-~~Vt~lsiHPS~KLALsVg-----------------~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd 181 (362)
T KOG0294|consen 121 KS-LKAHK-GQVTDLSIHPSGKLALSVG-----------------GDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD 181 (362)
T ss_pred ee-ecccc-cccceeEecCCCceEEEEc-----------------CCceeeeehhhcCccceeeccCCcceeeEEcCCCC
Confidence 22 12222 2499999999999888865 34556667765555443333333455689999999
Q ss_pred EEEEEeCCcEEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520 232 YVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 232 ~l~v~~~~~l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~ 283 (370)
..++....+|-.|.++.-+. +. .. ..+-.+-.+.++..+.+.+|....
T Consensus 182 ~F~v~~~~~i~i~q~d~A~v--~~-~i-~~~~r~l~~~~l~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 182 HFVVSGRNKIDIYQLDNASV--FR-EI-ENPKRILCATFLDGSELLVGGDNE 229 (362)
T ss_pred EEEEEeccEEEEEecccHhH--hh-hh-hccccceeeeecCCceEEEecCCc
Confidence 88888887766665433211 11 11 112234455666667777775543
No 104
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.68 E-value=0.0016 Score=64.77 Aligned_cols=178 Identities=12% Similarity=0.136 Sum_probs=107.4
Q ss_pred CCcceEEcCCCc-EEEEecCCeEEEEe--CCe-EEEEE---ecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCCeEEE
Q 017520 80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGT-WVNWK---FIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENF 151 (370)
Q Consensus 80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~-~~~~~---~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g~~~~ 151 (370)
...+++++.-|+ .++|...|.|-++| .|- ...|. ...+... |++.|.-+++.|+....|++.+. -++.. +
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~-gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l 527 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT-GLAVDGTNRLLVSAGADGILKFWDFKKKV-L 527 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee-EEEecCCCceEEEccCcceEEEEecCCcc-e
Confidence 456788888775 66888999999999 453 23331 2344556 99999888999988778998887 22211 1
Q ss_pred Eeec-CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE-EecCCCCccceEEccC
Q 017520 152 LSYV-NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRD 229 (370)
Q Consensus 152 ~~~~-~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~-~~~~~~~p~gi~~~~d 229 (370)
.... -+ ..+..+.......+.+.. ...-.|..||..|.++.. +.......+.+++++|
T Consensus 528 ~~~l~l~---~~~~~iv~hr~s~l~a~~-----------------~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D 587 (910)
T KOG1539|consen 528 KKSLRLG---SSITGIVYHRVSDLLAIA-----------------LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD 587 (910)
T ss_pred eeeeccC---CCcceeeeeehhhhhhhh-----------------cCceeEEEEEchhhhhhHHhhccccceeeeEeCCC
Confidence 1110 01 122222222221111110 122467888877654432 3334456788999999
Q ss_pred CCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520 230 EDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 230 g~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~ 283 (370)
|+++..+...+ |+.||+.... ....+. .+.-+-++.++++|.+..+.+-+
T Consensus 588 grWlisasmD~tIr~wDlpt~~--lID~~~--vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 588 GRWLISASMDSTIRTWDLPTGT--LIDGLL--VDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred CcEEEEeecCCcEEEEeccCcc--eeeeEe--cCCcceeeEECCCCCEEEEEEec
Confidence 99999988877 9999986542 222332 22235567777777766666543
No 105
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.03 Score=56.74 Aligned_cols=148 Identities=12% Similarity=0.125 Sum_probs=91.2
Q ss_pred CCCcceEEcCCCc-EEEEecCCeEEEEeCC----eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEE
Q 017520 79 NHPEDASMDKNGV-IYTATRDGWIKRLQDG----TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENF 151 (370)
Q Consensus 79 ~~P~~i~~d~~G~-l~v~~~~g~I~~~~~g----~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~ 151 (370)
.|-..|++|++|. |++...+|.|.+++.+ +.+.+...+.... +++.+. +.+..+...+-+.++. +.+ ...+
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~-~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~i 91 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVS-SIACYS-NHFLTGSEQNTVLRYKFPSGEEDTI 91 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeE-EEeecc-cceEEeeccceEEEeeCCCCCccce
Confidence 3567799999885 5566689999999822 1222221222234 666653 3555665555566666 444 2222
Q ss_pred EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-cceEEccCC
Q 017520 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDE 230 (370)
Q Consensus 152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-~gi~~~~dg 230 (370)
...+. --.+.++++.+|+..+.-+. +-.|-.++.++...+..+.+...| -++.++|++
T Consensus 92 L~Rft----lp~r~~~v~g~g~~iaagsd-----------------D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~ 150 (933)
T KOG1274|consen 92 LARFT----LPIRDLAVSGSGKMIAAGSD-----------------DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG 150 (933)
T ss_pred eeeee----ccceEEEEecCCcEEEeecC-----------------ceeEEEEeccccchheeecccCCceeeeeEcCCC
Confidence 11111 12467899999986555332 234556665555444455555555 478999999
Q ss_pred CEEEEEeCCc-EEEEEeCCC
Q 017520 231 DYVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 231 ~~l~v~~~~~-l~~~~~~~~ 249 (370)
++|.++..++ |..|+++..
T Consensus 151 ~fLAvss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDG 170 (933)
T ss_pred CEEEEEecCceEEEEEcccc
Confidence 9999988888 999998765
No 106
>PTZ00421 coronin; Provisional
Probab=97.63 E-value=0.069 Score=52.54 Aligned_cols=117 Identities=7% Similarity=0.002 Sum_probs=71.3
Q ss_pred ecCCCceeceEEcC-CCcEEEEeCCCc-eEEEc-CCC-eE-E---EEeecCCcccccccceEEcCCC-cEEEEeCCCCCC
Q 017520 114 FIDSQTLVGLTSTK-EGHLIICDNANG-LHKVS-EDG-VE-N---FLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYL 184 (370)
Q Consensus 114 ~~~~~p~~gl~~d~-~G~L~v~~~~~g-i~~~~-~~g-~~-~---~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~ 184 (370)
...+... ++++++ +++++++....+ |..++ +++ .. . ......+. ...+..+++.|++ ++.++.+
T Consensus 73 GH~~~V~-~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs----- 145 (493)
T PTZ00421 73 GQEGPII-DVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSAMNVLASAG----- 145 (493)
T ss_pred CCCCCEE-EEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCCCCEEEEEe-----
Confidence 3445567 899998 777555444444 55555 333 21 0 01111221 1357788999875 5665533
Q ss_pred CccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520 185 PHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 185 ~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~ 249 (370)
.++.|..||..+++....... ......++++++|+.++.+..++ |..||+...
T Consensus 146 ------------~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg 200 (493)
T PTZ00421 146 ------------ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG 200 (493)
T ss_pred ------------CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC
Confidence 357888999887765433332 33467899999999776666666 888997643
No 107
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=0.0066 Score=53.97 Aligned_cols=158 Identities=15% Similarity=0.157 Sum_probs=91.4
Q ss_pred eEecCCCcCCCcceEEcCCCcEEEEe-cCCeEEEEe---CCeEEEEEe---------cCCCceeceEEcCCC-cEEEEeC
Q 017520 71 IKVGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ---DGTWVNWKF---------IDSQTLVGLTSTKEG-HLIICDN 136 (370)
Q Consensus 71 ~~~~~~~~~~P~~i~~d~~G~l~v~~-~~g~I~~~~---~g~~~~~~~---------~~~~p~~gl~~d~~G-~L~v~~~ 136 (370)
.+++...+..||.|..-.+|..-+++ .+.+++.+. +..+..... ..+....|++.|+.+ +||++-.
T Consensus 121 rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 121 RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred EEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc
Confidence 34554557889999997766555666 677788776 333221111 112233389999755 6999865
Q ss_pred C--CceEEEc--CCCeE-EEE-eecC--CcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCC
Q 017520 137 A--NGLHKVS--EDGVE-NFL-SYVN--GSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 207 (370)
Q Consensus 137 ~--~gi~~~~--~~g~~-~~~-~~~~--g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~ 207 (370)
. .+|+.++ ++.+. ... .... +.-...+.++.+++ .|+++|-.. .+..|..+|.+
T Consensus 201 r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~-----------------ESr~l~Evd~~ 263 (316)
T COG3204 201 RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSD-----------------ESRRLLEVDLS 263 (316)
T ss_pred cCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEec-----------------CCceEEEEecC
Confidence 4 4788887 33311 111 1111 11133556677875 456665532 23567777766
Q ss_pred CCeEEEE---------ecCCCCccceEEccCCCEEEEEeCCc-EEEEEe
Q 017520 208 SNITTLV---------ADGFYFANGVALSRDEDYVVVCESWK-CRKYWL 246 (370)
Q Consensus 208 t~~~~~~---------~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~ 246 (370)
..-+..+ ..++..+.||+.|.+|+ ||+...-+ .++|..
T Consensus 264 G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSEPnlfy~F~~ 311 (316)
T COG3204 264 GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEPNLFYRFTP 311 (316)
T ss_pred CCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEecCCcceeccc
Confidence 4333322 23466789999999999 66655444 677653
No 108
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=97.61 E-value=0.049 Score=51.91 Aligned_cols=225 Identities=10% Similarity=0.016 Sum_probs=113.6
Q ss_pred ceEEcCCCcEEEEecCCeEEEEe-CC-eEEEEEec---CCCceeceEEcCCCcEEEEeCCCceEEEcCCC--eEEEEeec
Q 017520 83 DASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKFI---DSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYV 155 (370)
Q Consensus 83 ~i~~d~~G~l~v~~~~g~I~~~~-~g-~~~~~~~~---~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~~~~~~ 155 (370)
+|.+. +++.|+....|.|++-. .| .++..... .+... .+....++..|+....+.+++-...| ++......
T Consensus 141 ~v~f~-~~~g~~vG~~G~il~T~DgG~tW~~~~~~~~~p~~~~-~i~~~~~~~~~ivg~~G~v~~S~D~G~tW~~~~~~t 218 (398)
T PLN00033 141 SISFK-GKEGWIIGKPAILLHTSDGGETWERIPLSPKLPGEPV-LIKATGPKSAEMVTDEGAIYVTSNAGRNWKAAVEET 218 (398)
T ss_pred eeEEE-CCEEEEEcCceEEEEEcCCCCCceECccccCCCCCce-EEEEECCCceEEEeccceEEEECCCCCCceEccccc
Confidence 35554 35677766667777766 33 35543221 22233 44444455666665444455555445 44331110
Q ss_pred C-------------Cc-c-cccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe-EEEEe-cCC
Q 017520 156 N-------------GS-K-LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVA-DGF 218 (370)
Q Consensus 156 ~-------------g~-~-~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~-~~~~~-~~~ 218 (370)
. +. . ..+...+...+||.+++... .|.+++-+.+.+. ++.+. ...
T Consensus 219 ~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~------------------~G~~~~s~d~G~~~W~~~~~~~~ 280 (398)
T PLN00033 219 VSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSS------------------RGNFYLTWEPGQPYWQPHNRASA 280 (398)
T ss_pred ccccccccccccccccceeccceeeEEEcCCCCEEEEEC------------------CccEEEecCCCCcceEEecCCCc
Confidence 0 00 0 01234456667777666643 2566665444333 23332 222
Q ss_pred CCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCC--ceeeeccC-CCCCCCceeECCCCCEEEEEecCchhHHHhhhcc
Q 017520 219 YFANGVALSRDEDYVVVCESWK-CRKYWLKGERKG--KLETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSS 294 (370)
Q Consensus 219 ~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~--~~~~~~~~-~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~ 294 (370)
....++.+.+++. +|++...+ +++-+-.+.... ++...... ....+.++.+..++++|++-..+
T Consensus 281 ~~l~~v~~~~dg~-l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G----------- 348 (398)
T PLN00033 281 RRIQNMGWRADGG-LWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSG----------- 348 (398)
T ss_pred cceeeeeEcCCCC-EEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCC-----------
Confidence 3446778888888 55555555 665543332110 11111101 11113446677889999997765
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEE-ECCEEEEEeCCCCeE
Q 017520 295 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNFI 364 (370)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~-~~g~L~~gs~~~~~i 364 (370)
.+++-...|+........++. ......+.+ .+++.|+.+.++-.+
T Consensus 349 ------------------------~v~~s~D~G~tW~~~~~~~~~-~~~ly~v~f~~~~~g~~~G~~G~il 394 (398)
T PLN00033 349 ------------------------ILLRSTDGGKSWKRDKGADNI-AANLYSVKFFDDKKGFVLGNDGVLL 394 (398)
T ss_pred ------------------------cEEEeCCCCcceeEccccCCC-CcceeEEEEcCCCceEEEeCCcEEE
Confidence 355555667766654322322 122335554 458999999887643
No 109
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.59 E-value=0.00056 Score=50.16 Aligned_cols=61 Identities=11% Similarity=0.157 Sum_probs=46.6
Q ss_pred ceEEcCC-CcEEEEe------------------cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC-Cc
Q 017520 83 DASMDKN-GVIYTAT------------------RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NG 139 (370)
Q Consensus 83 ~i~~d~~-G~l~v~~------------------~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-~g 139 (370)
+++++++ |.||+++ .+|+++++| +++.+++......|+ |+++++|+. |+|++.. .+
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpN-GVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPN-GVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEE-EEEE-TTSSEEEEEEGGGTE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccC-eEEEcCCCCEEEEEeccCce
Confidence 5788887 9999986 258999999 778888888888899 999999997 8888766 57
Q ss_pred eEEEc
Q 017520 140 LHKVS 144 (370)
Q Consensus 140 i~~~~ 144 (370)
|.++.
T Consensus 81 i~ryw 85 (89)
T PF03088_consen 81 ILRYW 85 (89)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88876
No 110
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.53 E-value=0.032 Score=49.99 Aligned_cols=201 Identities=15% Similarity=0.187 Sum_probs=104.0
Q ss_pred CCcceEEcCCCc-EEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC--eEEEE
Q 017520 80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFL 152 (370)
Q Consensus 80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g--~~~~~ 152 (370)
..+++.+.+-|. |-+|..+|+|..|| +-.+......--+|..+++.++||+.+++... ..+..+| .+| ++.+.
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 378888998885 45788999999999 43333222222345448999999987776544 3444455 444 22221
Q ss_pred -e-ecCCcc-------------c-ccccc----------eEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeC
Q 017520 153 -S-YVNGSK-------------L-RFAND----------VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP 206 (370)
Q Consensus 153 -~-~~~g~~-------------~-~~~~~----------l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 206 (370)
+ ..-+.. + .++.- |..|++|.+=.+.+-. -++....-++.+...|.+..||.
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~--~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHG--VFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccc--cccCCCCEEEEecCcceEEEEec
Confidence 0 000000 0 01111 1112222221111100 01111112333445688889988
Q ss_pred CCCeEEEEe--cCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCC----CCCceee---eccCCCCC-CCceeECCCCC
Q 017520 207 SSNITTLVA--DGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGE----RKGKLET---FAENLPGA-PDNINLAPDGT 275 (370)
Q Consensus 207 ~t~~~~~~~--~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~----~~~~~~~---~~~~~~g~-p~~i~~d~~G~ 275 (370)
+|-++.... +.......|.++..|+++.+..+.+ |+.|+++.- +.+..+. +.+..... =...+++.+|.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 766543221 1223455688899999877777777 888886521 2222221 11100001 13578999998
Q ss_pred EEEEEec
Q 017520 276 FWIAIIK 282 (370)
Q Consensus 276 lwv~~~~ 282 (370)
+.++...
T Consensus 263 Yv~a~s~ 269 (405)
T KOG1273|consen 263 YVCAGSA 269 (405)
T ss_pred EEEeccc
Confidence 7777553
No 111
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.52 E-value=0.17 Score=53.11 Aligned_cols=174 Identities=10% Similarity=0.067 Sum_probs=96.9
Q ss_pred cceEEcC-C-CcEEEEecCCeEEEEe--CCe-EEEEEecCCCceeceEEcC-CCcEEEEeCCCc-eEEEc-CCC--eEEE
Q 017520 82 EDASMDK-N-GVIYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTK-EGHLIICDNANG-LHKVS-EDG--VENF 151 (370)
Q Consensus 82 ~~i~~d~-~-G~l~v~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~-~G~L~v~~~~~g-i~~~~-~~g--~~~~ 151 (370)
.++++.+ + ..|..++.+|.|..|+ +++ ...+....+... ++++++ ++.++++....| |..++ .++ +..+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~-~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW-SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE-EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 4566654 2 3466666899999999 444 334434455567 899985 677666554545 55555 455 3333
Q ss_pred EeecCCcccccccceEEc-CCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE--EEEecCCCCccceEEcc
Q 017520 152 LSYVNGSKLRFANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT--TLVADGFYFANGVALSR 228 (370)
Q Consensus 152 ~~~~~g~~~~~~~~l~~d-~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~--~~~~~~~~~p~gi~~~~ 228 (370)
.. ...+..+.+. ++|+..++.+ .++.|+.||..+... ..+.........+.+.
T Consensus 615 ~~------~~~v~~v~~~~~~g~~latgs-----------------~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~- 670 (793)
T PLN00181 615 KT------KANICCVQFPSESGRSLAFGS-----------------ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV- 670 (793)
T ss_pred ec------CCCeEEEEEeCCCCCEEEEEe-----------------CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-
Confidence 11 1234556664 4677666543 457899999865432 2222222234556675
Q ss_pred CCCEEEEEeCCc-EEEEEeCCCCC----CceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520 229 DEDYVVVCESWK-CRKYWLKGERK----GKLETFAENLPGAPDNINLAPDGTFWIAII 281 (370)
Q Consensus 229 dg~~l~v~~~~~-l~~~~~~~~~~----~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~ 281 (370)
+++.++.+...+ |..||+..... .....+. ........+.++++|++.++..
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEe
Confidence 666666666666 88888753211 1112221 2222344577888887655543
No 112
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.51 E-value=0.07 Score=48.41 Aligned_cols=106 Identities=17% Similarity=0.147 Sum_probs=64.0
Q ss_pred CCceeceEEcCCCcEEEEeC-CC--ceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceec
Q 017520 117 SQTLVGLTSTKEGHLIICDN-AN--GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD 191 (370)
Q Consensus 117 ~~p~~gl~~d~~G~L~v~~~-~~--gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~ 191 (370)
.+.+ +++.++.....|+-. .- -.+.+| .+| ........++. ++--.-++++||++.+++.+ .+
T Consensus 5 ~RgH-~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEn-d~-------- 72 (305)
T PF07433_consen 5 ARGH-GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTEN-DY-------- 72 (305)
T ss_pred cccc-ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEecc-cc--------
Confidence 4567 888888554333322 22 366777 566 33333332332 22224688999975555443 11
Q ss_pred ccccCCCceEEEEeCCCC--eEEEEecCCCCccceEEccCCCEEEEEe
Q 017520 192 ILEGKPHGQLLKYDPSSN--ITTLVADGFYFANGVALSRDEDYVVVCE 237 (370)
Q Consensus 192 ~~~~~~~g~l~~~d~~t~--~~~~~~~~~~~p~gi~~~~dg~~l~v~~ 237 (370)
....|.|-+||...+ ++..+......|.-+.+.+||+.|+|++
T Consensus 73 ---~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN 117 (305)
T PF07433_consen 73 ---ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN 117 (305)
T ss_pred ---CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence 235678889998722 2233445566789999999998899987
No 113
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.49 E-value=0.011 Score=59.82 Aligned_cols=166 Identities=13% Similarity=0.148 Sum_probs=98.2
Q ss_pred cEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC--eEEEEeecCCccccccc
Q 017520 91 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRFAN 164 (370)
Q Consensus 91 ~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g--~~~~~~~~~g~~~~~~~ 164 (370)
++.+++.++.|.++. .+....+..-..-|.-.++++.+|+..++... ..|-.++ .++ .+.+... . ..+-
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-~----apVl 142 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-D----APVL 142 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-C----Ccee
Confidence 566677788888887 44433222211223227899989987776544 4666666 444 3333221 1 2456
Q ss_pred ceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCC----C-----ccceEEccCCCEEEE
Q 017520 165 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY----F-----ANGVALSRDEDYVVV 235 (370)
Q Consensus 165 ~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~----~-----p~gi~~~~dg~~l~v 235 (370)
.|.++|+|++....+ .+|.|+.||.+++.+....+++. + -.-++|+|+|..+.+
T Consensus 143 ~l~~~p~~~fLAvss-----------------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~ 205 (933)
T KOG1274|consen 143 QLSYDPKGNFLAVSS-----------------CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV 205 (933)
T ss_pred eeeEcCCCCEEEEEe-----------------cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEe
Confidence 789999999877754 67899999998776544443322 1 134789999776777
Q ss_pred EeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEE
Q 017520 236 CESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 279 (370)
Q Consensus 236 ~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~ 279 (370)
....+ |..|+.++-.. .+..-.+.....-..+..++.|.+..+
T Consensus 206 ~~~d~~Vkvy~r~~we~-~f~Lr~~~~ss~~~~~~wsPnG~YiAA 249 (933)
T KOG1274|consen 206 PPVDNTVKVYSRKGWEL-QFKLRDKLSSSKFSDLQWSPNGKYIAA 249 (933)
T ss_pred eccCCeEEEEccCCcee-heeecccccccceEEEEEcCCCcEEee
Confidence 77767 88898765311 111101111111344667888854433
No 114
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.47 E-value=0.066 Score=47.20 Aligned_cols=184 Identities=11% Similarity=0.134 Sum_probs=112.2
Q ss_pred CCCcCCCcceEEcCCCcEEE-EecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCC-ceEEEcCCC--
Q 017520 75 EGSVNHPEDASMDKNGVIYT-ATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVSEDG-- 147 (370)
Q Consensus 75 ~~~~~~P~~i~~d~~G~l~v-~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~-gi~~~~~~g-- 147 (370)
.|.-..-++++..+||+..+ ++.|+.+..+| .|+ ...+........ ++++++|.+-.|..... -|..++--|
T Consensus 60 ~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl-sva~s~dn~qivSGSrDkTiklwnt~g~c 138 (315)
T KOG0279|consen 60 TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL-SVAFSTDNRQIVSGSRDKTIKLWNTLGVC 138 (315)
T ss_pred eccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-EEEecCCCceeecCCCcceeeeeeecccE
Confidence 34333456678888887665 55899888899 554 344555556677 99999999877765553 355555323
Q ss_pred eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-ecCCCCccceE
Q 017520 148 VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVA 225 (370)
Q Consensus 148 ~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~p~gi~ 225 (370)
.-.+.. +..-..++.+.+.|.. +.+|...+ .+..|-.+|.++-+.+.. ...-..-+.++
T Consensus 139 k~t~~~---~~~~~WVscvrfsP~~~~p~Ivs~s----------------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~ 199 (315)
T KOG0279|consen 139 KYTIHE---DSHREWVSCVRFSPNESNPIIVSAS----------------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVT 199 (315)
T ss_pred EEEEec---CCCcCcEEEEEEcCCCCCcEEEEcc----------------CCceEEEEccCCcchhhccccccccEEEEE
Confidence 222222 1113578889999875 55555443 456788888876555432 23334567899
Q ss_pred EccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520 226 LSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 226 ~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~ 283 (370)
++|||....-.+.++ +..+|+...+- ...+ ........+++.++ ++|+....+
T Consensus 200 vSpDGslcasGgkdg~~~LwdL~~~k~--lysl--~a~~~v~sl~fspn-rywL~~at~ 253 (315)
T KOG0279|consen 200 VSPDGSLCASGGKDGEAMLWDLNEGKN--LYSL--EAFDIVNSLCFSPN-RYWLCAATA 253 (315)
T ss_pred ECCCCCEEecCCCCceEEEEEccCCce--eEec--cCCCeEeeEEecCC-ceeEeeccC
Confidence 999998433334444 88888765421 2111 11123456888875 588876544
No 115
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.47 E-value=0.043 Score=51.79 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=57.5
Q ss_pred ceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEE
Q 017520 199 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFW 277 (370)
Q Consensus 199 g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lw 277 (370)
..|-.||.++++++....++.....+.+++||+.+.+++... |+.+|++.+ +.+..-....++..++...+++ -|
T Consensus 382 D~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng---nv~~idkS~~~lItdf~~~~ns-r~ 457 (668)
T COG4946 382 DKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG---NVRLIDKSEYGLITDFDWHPNS-RW 457 (668)
T ss_pred ceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC---CeeEecccccceeEEEEEcCCc-ee
Confidence 368889999999888888999999999999999888887766 999999865 3333222233455666666665 45
Q ss_pred EEE
Q 017520 278 IAI 280 (370)
Q Consensus 278 v~~ 280 (370)
++-
T Consensus 458 iAY 460 (668)
T COG4946 458 IAY 460 (668)
T ss_pred EEE
Confidence 554
No 116
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.46 E-value=0.028 Score=52.58 Aligned_cols=152 Identities=15% Similarity=0.195 Sum_probs=74.5
Q ss_pred EEcCCC-cEEE-Ee--cCCeEEEEe--CCeEEEEEecCC-CceeceEEcCCCc-EEEEeCCCceEEEc-CCC-eEEEEee
Q 017520 85 SMDKNG-VIYT-AT--RDGWIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSY 154 (370)
Q Consensus 85 ~~d~~G-~l~v-~~--~~g~I~~~~--~g~~~~~~~~~~-~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g-~~~~~~~ 154 (370)
++..|| .|.+ ++ .+.+++.++ +++.+.+....+ ... |..+.++.+ +|.......|.+++ .+. .+.+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 345566 4444 44 345688888 788887765443 244 666666664 54333356899999 666 5455443
Q ss_pred cCCcccccccceEEcCCCcEEEEeCCCC--CCC---ccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEcc-
Q 017520 155 VNGSKLRFANDVVEASDGSLYFTVSSSK--YLP---HEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR- 228 (370)
Q Consensus 155 ~~g~~~~~~~~l~~d~~G~l~v~d~~~~--~~~---~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~- 228 (370)
..+. ..--..+.+.|++.+++....+ +.. -..+.++.+..+..+|+++|.++|+.+++...-..-+-+.++|
T Consensus 121 p~~~--~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 121 PDDW--KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp -TTE--EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred Cccc--ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 3221 1111234567888777643211 110 1134456667788899999999999998876555455556665
Q ss_pred CCCEEEEEeCC
Q 017520 229 DEDYVVVCESW 239 (370)
Q Consensus 229 dg~~l~v~~~~ 239 (370)
|...+-+|..+
T Consensus 199 dp~li~fCHEG 209 (386)
T PF14583_consen 199 DPTLIMFCHEG 209 (386)
T ss_dssp EEEEEEEEE-S
T ss_pred CCCEEEEeccC
Confidence 33445555443
No 117
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.46 E-value=0.085 Score=48.22 Aligned_cols=214 Identities=14% Similarity=0.183 Sum_probs=105.7
Q ss_pred ceEEcCCCcEEEEecCCeEEEEe-CC-eEEEEEe---cCCCceeceEEcCCCcEEEEeCCCceEEEcCCC--eEEEEeec
Q 017520 83 DASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKF---IDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYV 155 (370)
Q Consensus 83 ~i~~d~~G~l~v~~~~g~I~~~~-~g-~~~~~~~---~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~~~~~~ 155 (370)
+|.++ +...|+....|.|++-. .| .++.+.. ..+.+. ++....++..+++.....|++-...| .+.+....
T Consensus 66 ~I~f~-~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~-~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~ 143 (302)
T PF14870_consen 66 SISFD-GNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPF-GITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSET 143 (302)
T ss_dssp EEEEE-TTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EE-EEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S-
T ss_pred EEEec-CCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCee-EEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCC
Confidence 34444 34677766677777776 34 4665432 235667 77666677777776556677776555 66554432
Q ss_pred CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEE-EEeCCCCeEEEEec-CCCCccceEEccCCCEE
Q 017520 156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL-KYDPSSNITTLVAD-GFYFANGVALSRDEDYV 233 (370)
Q Consensus 156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~-~~d~~t~~~~~~~~-~~~~p~gi~~~~dg~~l 233 (370)
. ..++++...+||++..... .|.++ -.|+.....+.... .......+.+++|++ +
T Consensus 144 ~----gs~~~~~r~~dG~~vavs~------------------~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-l 200 (302)
T PF14870_consen 144 S----GSINDITRSSDGRYVAVSS------------------RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-L 200 (302)
T ss_dssp -------EEEEEE-TTS-EEEEET------------------TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--E
T ss_pred c----ceeEeEEECCCCcEEEEEC------------------cccEEEEecCCCccceEEccCccceehhceecCCCC-E
Confidence 2 3677788888998554432 25555 44554333444433 245567889999987 7
Q ss_pred EEEeCCc-EEEEEeCCCCCCceeeeccC-C----CCC-CCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCc
Q 017520 234 VVCESWK-CRKYWLKGERKGKLETFAEN-L----PGA-PDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK 306 (370)
Q Consensus 234 ~v~~~~~-l~~~~~~~~~~~~~~~~~~~-~----~g~-p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (370)
|....++ |+.-+... ..+.+.+. . .++ .-.++..+++.+|++...+
T Consensus 201 w~~~~Gg~~~~s~~~~----~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G----------------------- 253 (302)
T PF14870_consen 201 WMLARGGQIQFSDDPD----DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG----------------------- 253 (302)
T ss_dssp EEEETTTEEEEEE-TT----EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-----------------------
T ss_pred EEEeCCcEEEEccCCC----CccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-----------------------
Confidence 7777777 44444111 12222110 1 111 1235778889999987765
Q ss_pred cccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEE-ECCEEEEEeCCC
Q 017520 307 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTS 361 (370)
Q Consensus 307 ~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~-~~g~L~~gs~~~ 361 (370)
.+++=...|+..+.....+....+. ..+.+ .+++-|+-+-++
T Consensus 254 ------------~l~~S~DgGktW~~~~~~~~~~~n~-~~i~f~~~~~gf~lG~~G 296 (302)
T PF14870_consen 254 ------------TLLVSTDGGKTWQKDRVGENVPSNL-YRIVFVNPDKGFVLGQDG 296 (302)
T ss_dssp -------------EEEESSTTSS-EE-GGGTTSSS----EEEEEETTEEEEE-STT
T ss_pred ------------cEEEeCCCCccceECccccCCCCce-EEEEEcCCCceEEECCCc
Confidence 3555555677777654433332233 33443 456777766554
No 118
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.45 E-value=0.11 Score=49.26 Aligned_cols=106 Identities=16% Similarity=0.236 Sum_probs=63.6
Q ss_pred CCCcEEEEecCCeEEEEe--CCeEEEEEecCC--CceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecCCcccc
Q 017520 88 KNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS--QTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLR 161 (370)
Q Consensus 88 ~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~--~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~ 161 (370)
.+|+||+++.+|.++.++ +|+........+ .-. +-.+-.++.+|+....+.++.++ .+| .........+....
T Consensus 110 ~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~-~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~ 188 (370)
T COG1520 110 SDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA-SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLS 188 (370)
T ss_pred eCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe-cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccc
Confidence 389999999999999999 677655444443 122 33344588999986446799999 568 43332221101111
Q ss_pred cccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE
Q 017520 162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT 211 (370)
Q Consensus 162 ~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~ 211 (370)
...... ..+|.+|++..+ . ++.++.+|+.+++.
T Consensus 189 ~~~~~~-~~~~~vy~~~~~---------------~-~~~~~a~~~~~G~~ 221 (370)
T COG1520 189 IYGSPA-IASGTVYVGSDG---------------Y-DGILYALNAEDGTL 221 (370)
T ss_pred cccCce-eecceEEEecCC---------------C-cceEEEEEccCCcE
Confidence 111122 567889998542 0 23677777766654
No 119
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.44 E-value=0.065 Score=48.18 Aligned_cols=124 Identities=17% Similarity=0.196 Sum_probs=73.0
Q ss_pred cceEEcc--CCCEEEEEeCCc--EEEEEeCCCCCCceeeeccC-CCC--CCCceeECCCCCEEEEEecCchhHHHhhhcc
Q 017520 222 NGVALSR--DEDYVVVCESWK--CRKYWLKGERKGKLETFAEN-LPG--APDNINLAPDGTFWIAIIKLDARRMKILNSS 294 (370)
Q Consensus 222 ~gi~~~~--dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~-~~g--~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~ 294 (370)
.|+++.. .++.||.++-.. |-+||-.=.+......|.+. +|. -|-||.- -.|+|||+-....-
T Consensus 141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqn-ig~~lyVtYA~qd~--------- 210 (336)
T TIGR03118 141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQN-LGGTLYVTYAQQDA--------- 210 (336)
T ss_pred eeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEE-ECCeEEEEEEecCC---------
Confidence 4667664 367899999755 88887332111111112221 221 2455543 34789999654211
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEE-------ECCEEEEEeCCCCeEEEE
Q 017520 295 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ-------VDNHLYVISLTSNFIGKV 367 (370)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~-------~~g~L~~gs~~~~~i~~~ 367 (370)
..+. -......|.|-.||.+|++++.|.+. |. .+....++. -.|.|.+|++....|-.+
T Consensus 211 -----------~~~d-~v~G~G~G~VdvFd~~G~l~~r~as~-g~-LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaF 276 (336)
T TIGR03118 211 -----------DRND-EVAGAGLGYVNVFTLNGQLLRRVASS-GR-LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAY 276 (336)
T ss_pred -----------cccc-cccCCCcceEEEEcCCCcEEEEeccC-Cc-ccCCceeeeChhhhCCCCCCeEEeecCCceeEEe
Confidence 0000 01255668999999999999999653 33 333333332 147899999999899888
Q ss_pred eC
Q 017520 368 QL 369 (370)
Q Consensus 368 ~~ 369 (370)
+.
T Consensus 277 D~ 278 (336)
T TIGR03118 277 DP 278 (336)
T ss_pred cC
Confidence 74
No 120
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.44 E-value=0.021 Score=56.33 Aligned_cols=187 Identities=13% Similarity=0.119 Sum_probs=96.0
Q ss_pred eEEc-CCCcEEEEecCC------------------eEEEEe--CCeEEEEEecCC-------Cceec-eEE---cCCCc-
Q 017520 84 ASMD-KNGVIYTATRDG------------------WIKRLQ--DGTWVNWKFIDS-------QTLVG-LTS---TKEGH- 130 (370)
Q Consensus 84 i~~d-~~G~l~v~~~~g------------------~I~~~~--~g~~~~~~~~~~-------~p~~g-l~~---d~~G~- 130 (370)
.++| ..|.+|+++.++ .|+.+| +|+......... .+. . +.. +-+|.
T Consensus 222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s-~p~~~~~~~~~g~~ 300 (488)
T cd00216 222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPN-QPSLADIKPKDGKP 300 (488)
T ss_pred eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCC-CCeEEeccccCCCe
Confidence 5677 467899998665 799999 787654332110 011 1 111 12443
Q ss_pred ---EEEEeCCCceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEe
Q 017520 131 ---LIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD 205 (370)
Q Consensus 131 ---L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d 205 (370)
+|++...+.++.++ ++| ...-... . ...++.++ +.+|+.......+..............|.|+.+|
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~-~------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPE-V------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEe-e------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 77776666699999 688 3322111 0 11234444 7788864321111100000000112457899999
Q ss_pred CCCCeEEEEecCCC--------Cc--cc-eEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCC
Q 017520 206 PSSNITTLVADGFY--------FA--NG-VALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPD 273 (370)
Q Consensus 206 ~~t~~~~~~~~~~~--------~p--~g-i~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~ 273 (370)
..+++..-...... .+ .+ ++. .++.+|+.+..+ |+.+|.++.+.--...+......-| +....+
T Consensus 373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P--~~~~~~ 448 (488)
T cd00216 373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATP--MTYEVN 448 (488)
T ss_pred CCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcC--EEEEeC
Confidence 98887543222110 11 11 222 345688887766 9999976542211111110111112 444568
Q ss_pred CCEEEEEecC
Q 017520 274 GTFWIAIIKL 283 (370)
Q Consensus 274 G~lwv~~~~~ 283 (370)
|++||++..+
T Consensus 449 g~~yv~~~~g 458 (488)
T cd00216 449 GKQYVGVMVG 458 (488)
T ss_pred CEEEEEEEec
Confidence 9999999776
No 121
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.41 E-value=0.054 Score=53.81 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=62.6
Q ss_pred CCcEEEEecCCeEEEEe--CCeEEEEEecCC----C--------ceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEE
Q 017520 89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDS----Q--------TLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFL 152 (370)
Q Consensus 89 ~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~----~--------p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~ 152 (370)
+|.||+++.++.|+.+| +|+...-..... . .. ++++. ++++|+++....++.+| ++| ...-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~r-g~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNR-GVALY-DGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccc-cceEE-CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 68999999889999999 776443221110 0 12 44554 67899998778899999 688 33221
Q ss_pred eecCCcc--cccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE
Q 017520 153 SYVNGSK--LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT 212 (370)
Q Consensus 153 ~~~~g~~--~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~ 212 (370)
.. .... ......-.+ .+|.+|++.++..++ ..+.|+.+|.++|+..
T Consensus 147 ~~-~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~------------~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 147 KN-GDYKAGYTITAAPLV-VKGKVITGISGGEFG------------VRGYVTAYDAKTGKLV 194 (527)
T ss_pred cc-ccccccccccCCcEE-ECCEEEEeecccccC------------CCcEEEEEECCCCcee
Confidence 11 1100 000111122 257888886532221 3467778887777653
No 122
>PTZ00420 coronin; Provisional
Probab=97.41 E-value=0.17 Score=50.50 Aligned_cols=117 Identities=7% Similarity=-0.058 Sum_probs=69.1
Q ss_pred cCCCceeceEEcCC-CcEEEEeCCCc-eEEEc-CCC---eEEEE---eecCCcccccccceEEcCCCcEEEEeCCCCCCC
Q 017520 115 IDSQTLVGLTSTKE-GHLIICDNANG-LHKVS-EDG---VENFL---SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP 185 (370)
Q Consensus 115 ~~~~p~~gl~~d~~-G~L~v~~~~~g-i~~~~-~~g---~~~~~---~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~ 185 (370)
..+... .++++++ ++++++....+ |..++ +++ ...+. ....+. ...++.+++.|++...+...+
T Consensus 73 H~~~V~-~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH-~~~V~sVaf~P~g~~iLaSgS----- 145 (568)
T PTZ00420 73 HTSSIL-DLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH-KKKISIIDWNPMNYYIMCSSG----- 145 (568)
T ss_pred CCCCEE-EEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC-CCcEEEEEECCCCCeEEEEEe-----
Confidence 345566 8999986 56666544444 44444 433 11110 011221 235788999998864433222
Q ss_pred ccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520 186 HEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 186 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~ 249 (370)
.++.|..||..+++.............++++++|+.+..+...+ |..||+...
T Consensus 146 -----------~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 146 -----------FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred -----------CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence 35788889987765433222223457889999999665555555 889997653
No 123
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.39 E-value=0.0071 Score=56.83 Aligned_cols=130 Identities=13% Similarity=0.121 Sum_probs=87.6
Q ss_pred cEEEEecCC-eEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCCceEEEc-CCC-eEEEEeecCCccccccc
Q 017520 91 VIYTATRDG-WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFAN 164 (370)
Q Consensus 91 ~l~v~~~~g-~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~ 164 (370)
.+.+|+.+| .|-.++ +|+.+.+....+... .+.++++|. +.+++....|+.++ .+| .+.+-.. ....+.
T Consensus 373 ~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS----~~~lIt 447 (668)
T COG4946 373 GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS----EYGLIT 447 (668)
T ss_pred ceEEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccc----ccceeE
Confidence 356677666 666777 667788888888888 999999998 66666556789999 788 6654322 223566
Q ss_pred ceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC
Q 017520 165 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 238 (370)
Q Consensus 165 ~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~ 238 (370)
++++.++++ |++-+ +. +.--...+-.||.+++++-.+.+....-..-++|+|++.||+-..
T Consensus 448 df~~~~nsr-~iAYa-----fP-------~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 448 DFDWHPNSR-WIAYA-----FP-------EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred EEEEcCCce-eEEEe-----cC-------cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 788888776 45521 11 011123566788887776555555445556789999999998764
No 124
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.39 E-value=0.0046 Score=61.00 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=48.0
Q ss_pred cccccccceEEcCCCcEEEEeCCCCCCCc--c-----ceecccccCCCceEEEEeCCCCeEEEEecC--CCCccceEEcc
Q 017520 158 SKLRFANDVVEASDGSLYFTVSSSKYLPH--E-----YCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSR 228 (370)
Q Consensus 158 ~~~~~~~~l~~d~~G~l~v~d~~~~~~~~--~-----~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~p~gi~~~~ 228 (370)
..+.+|..|++|++|+|||.......... . ....+....+.. +...++.+++++.++.. .....|+++++
T Consensus 433 ~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp 511 (524)
T PF05787_consen 433 NGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLVGPNGAEITGPCFSP 511 (524)
T ss_pred CCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeeccCCCCcccccceECC
Confidence 34678889999999999998654221110 0 000010111111 55567777777766543 34567999999
Q ss_pred CCCEEEEEe
Q 017520 229 DEDYVVVCE 237 (370)
Q Consensus 229 dg~~l~v~~ 237 (370)
|++.||+.-
T Consensus 512 Dg~tlFvni 520 (524)
T PF05787_consen 512 DGRTLFVNI 520 (524)
T ss_pred CCCEEEEEE
Confidence 999888853
No 125
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.38 E-value=0.028 Score=52.70 Aligned_cols=222 Identities=15% Similarity=0.176 Sum_probs=122.6
Q ss_pred eEEcCCCc--EEEEecCCeEEEEe--CCeEEEEEecCCCc----eeceEEcCCCcEEEEeCC-CceEEEc-CCC--eEEE
Q 017520 84 ASMDKNGV--IYTATRDGWIKRLQ--DGTWVNWKFIDSQT----LVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENF 151 (370)
Q Consensus 84 i~~d~~G~--l~v~~~~g~I~~~~--~g~~~~~~~~~~~p----~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g--~~~~ 151 (370)
.++.++|. ++++....-.|.|| ..++..+....+.+ . -+.++++++..+.... +-|+.+. .++ +..+
T Consensus 263 a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e-~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~ 341 (514)
T KOG2055|consen 263 AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSME-RFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF 341 (514)
T ss_pred eeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhh-eeEecCCCCeEEEcccCceEEeehhhhhhhhhee
Confidence 44555664 44555555566677 66666554444332 2 3566788874443333 3466666 455 3332
Q ss_pred EeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe--cCCCCccceEEcc
Q 017520 152 LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSR 228 (370)
Q Consensus 152 ~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~~~p~gi~~~~ 228 (370)
. .+ ..+.+++++.||+ ||++. ..|.||.+|..+..+.... .+......+|.+.
T Consensus 342 K--ie----G~v~~~~fsSdsk~l~~~~------------------~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ 397 (514)
T KOG2055|consen 342 K--IE----GVVSDFTFSSDSKELLASG------------------GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL 397 (514)
T ss_pred e--ec----cEEeeEEEecCCcEEEEEc------------------CCceEEEEecCCcceEEEEeecCccceeeeeecC
Confidence 1 12 2567889999995 66663 3478999998877654333 3344556688889
Q ss_pred CCCEEEEEeCCc-EEEEEeCCCCCC-ceeee--ccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhC
Q 017520 229 DEDYVVVCESWK-CRKYWLKGERKG-KLETF--AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAY 304 (370)
Q Consensus 229 dg~~l~v~~~~~-l~~~~~~~~~~~-~~~~~--~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (370)
++.++-.....+ |-.|+.+.-..+ +.+++ .+++.--.+.+.+.+|+.|..=+...
T Consensus 398 ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~--------------------- 456 (514)
T KOG2055|consen 398 NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV--------------------- 456 (514)
T ss_pred CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc---------------------
Confidence 998444444444 778875432111 11111 12333335667777777543322221
Q ss_pred CccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEE--CCEEEEEeCCCC
Q 017520 305 PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSN 362 (370)
Q Consensus 305 ~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~g~L~~gs~~~~ 362 (370)
.+++-.++++ |.=.+..+|.... .....++++.+. +|.|-+|+-.+.
T Consensus 457 ---------~knalrLVHv-PS~TVFsNfP~~n-~~vg~vtc~aFSP~sG~lAvGNe~gr 505 (514)
T KOG2055|consen 457 ---------KKNALRLVHV-PSCTVFSNFPTSN-TKVGHVTCMAFSPNSGYLAVGNEAGR 505 (514)
T ss_pred ---------cccceEEEec-cceeeeccCCCCC-CcccceEEEEecCCCceEEeecCCCc
Confidence 1111112222 4445566676654 446678888876 478888876654
No 126
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.35 E-value=0.019 Score=53.21 Aligned_cols=177 Identities=16% Similarity=0.154 Sum_probs=104.2
Q ss_pred CCcceEEcCC--C-cEEEEecCCeEEEEe-CCe--EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCCeEEE
Q 017520 80 HPEDASMDKN--G-VIYTATRDGWIKRLQ-DGT--WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDGVENF 151 (370)
Q Consensus 80 ~P~~i~~d~~--G-~l~v~~~~g~I~~~~-~g~--~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g~~~~ 151 (370)
...++.+-|. + .|-.+..||.+.-|+ +++ +..+.....+.. .++|.|+|..+.+.....-.++. .++.+.+
T Consensus 219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs-~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL 297 (459)
T KOG0272|consen 219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS-RVAFHPSGKFLGTASFDSTWRLWDLETKSELL 297 (459)
T ss_pred ceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe-eeeecCCCceeeecccccchhhcccccchhhH
Confidence 3344444442 2 566666788777777 432 233333344566 89999999987766554444444 3331111
Q ss_pred EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEccCC
Q 017520 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDE 230 (370)
Q Consensus 152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~dg 230 (370)
. ..|. ...+.++++.+||.+-.+.+. ...++| +|..++....++.+ .....+++|+|+|
T Consensus 298 ~--QEGH-s~~v~~iaf~~DGSL~~tGGl---------------D~~~Rv--WDlRtgr~im~L~gH~k~I~~V~fsPNG 357 (459)
T KOG0272|consen 298 L--QEGH-SKGVFSIAFQPDGSLAATGGL---------------DSLGRV--WDLRTGRCIMFLAGHIKEILSVAFSPNG 357 (459)
T ss_pred h--hccc-ccccceeEecCCCceeeccCc---------------cchhhe--eecccCcEEEEecccccceeeEeECCCc
Confidence 1 1232 246889999999999877542 122444 57777777666544 5567899999999
Q ss_pred CEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520 231 DYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 280 (370)
Q Consensus 231 ~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~ 280 (370)
-.+.-+...+ +.++|+...+. ... +.........++++++++.++.+
T Consensus 358 y~lATgs~Dnt~kVWDLR~r~~--ly~-ipAH~nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 358 YHLATGSSDNTCKVWDLRMRSE--LYT-IPAHSNLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred eEEeecCCCCcEEEeeeccccc--cee-cccccchhhheEecccCCeEEEE
Confidence 7655555555 77777765321 111 11233355678888744444443
No 127
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.32 E-value=0.0033 Score=56.19 Aligned_cols=108 Identities=16% Similarity=0.301 Sum_probs=68.3
Q ss_pred ceeceEEcCCCcEEEEeCCCceEEEc--CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccc
Q 017520 119 TLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE 194 (370)
Q Consensus 119 p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~ 194 (370)
.. ++.|+.|+.-..........++. +.| ++.+ .|. ..++|...+.+||+-.++.+
T Consensus 309 vt-~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf----rGH-sSyvn~a~ft~dG~~iisaS--------------- 367 (508)
T KOG0275|consen 309 VT-CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF----RGH-SSYVNEATFTDDGHHIISAS--------------- 367 (508)
T ss_pred ee-EEEEccCcchhhcccccceEEEeccccchhHHHh----cCc-cccccceEEcCCCCeEEEec---------------
Confidence 45 78898888655544455677776 556 4443 222 25789999999998777765
Q ss_pred cCCCceEEEEeCCCCeEEEEecCC---CCccceEEcc-CCCEEEEEeCCc-EEEEEeCCC
Q 017520 195 GKPHGQLLKYDPSSNITTLVADGF---YFANGVALSR-DEDYVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 195 ~~~~g~l~~~d~~t~~~~~~~~~~---~~p~gi~~~~-dg~~l~v~~~~~-l~~~~~~~~ 249 (370)
.+|.|-.|+.++.++...+..+ ...|.+.+-| +-..++|++..+ |+..++.|.
T Consensus 368 --sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ 425 (508)
T KOG0275|consen 368 --SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ 425 (508)
T ss_pred --CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce
Confidence 3578888888776553222111 1224444433 345688888777 888887764
No 128
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.29 E-value=0.035 Score=51.70 Aligned_cols=158 Identities=18% Similarity=0.249 Sum_probs=89.1
Q ss_pred cCCCcceEEc-CCCcEEEEecCCe------EEEEe-C---Ce---EE-----EEEecCC--------CceeceEEcCCCc
Q 017520 78 VNHPEDASMD-KNGVIYTATRDGW------IKRLQ-D---GT---WV-----NWKFIDS--------QTLVGLTSTKEGH 130 (370)
Q Consensus 78 ~~~P~~i~~d-~~G~l~v~~~~g~------I~~~~-~---g~---~~-----~~~~~~~--------~p~~gl~~d~~G~ 130 (370)
+.+=.+|+.+ .+|.+|+-+.+|. ++.+. + +. ++ .+....+ .+- ||++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~E-gi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPE-GIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChh-HeEEecCCC
Confidence 4455678888 5677776665666 77666 2 11 11 1112222 344 789988999
Q ss_pred EEEEeCCC-------ceEEEcCCC--eEEE-Eee-c-------CC-cccccccceEEcCCCc-EEEEeCCCCCCCcccee
Q 017520 131 LIICDNAN-------GLHKVSEDG--VENF-LSY-V-------NG-SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCL 190 (370)
Q Consensus 131 L~v~~~~~-------gi~~~~~~g--~~~~-~~~-~-------~g-~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~ 190 (370)
+||++.+. .|++++.+| .+.+ .+. . .+ .......+|++.+||+ ||+...+.-.+....
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~-- 175 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR-- 175 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc--
Confidence 99997654 589999777 3333 111 1 11 1234667899999997 898866521111000
Q ss_pred cccccCCCceEEEEeCCCCe--EEEE---ec------CCCCccceEEccCCCEEEEEeCC
Q 017520 191 DILEGKPHGQLLKYDPSSNI--TTLV---AD------GFYFANGVALSRDEDYVVVCESW 239 (370)
Q Consensus 191 ~~~~~~~~g~l~~~d~~t~~--~~~~---~~------~~~~p~gi~~~~dg~~l~v~~~~ 239 (370)
........-++++||+.+.. ...+ .+ ....+..++.-+|++ ++|-|..
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~ 234 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERD 234 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEcc
Confidence 00001112478899987522 2211 12 223444566677887 8888876
No 129
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.024 Score=53.48 Aligned_cols=63 Identities=24% Similarity=0.345 Sum_probs=41.0
Q ss_pred CccceEEccC-------CCEEEEEeCCc--EEEEEeCCCCCCceeeecc-CCCCCCCceeECCCCCEEEEEecC
Q 017520 220 FANGVALSRD-------EDYVVVCESWK--CRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 220 ~p~gi~~~~d-------g~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~~G~lwv~~~~~ 283 (370)
.|-|++|... ++ ++++.... +.+.+.++...-..+.+.. ...+.|.++++.+||.|++++..+
T Consensus 315 ApsGmaFy~G~~fP~~r~~-lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~ 387 (399)
T COG2133 315 APSGMAFYTGDLFPAYRGD-LFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQG 387 (399)
T ss_pred ccceeEEecCCcCccccCc-EEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCC
Confidence 4556666532 33 88888776 7777766652222233332 234789999999999999998764
No 130
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.27 E-value=0.036 Score=52.00 Aligned_cols=142 Identities=15% Similarity=0.184 Sum_probs=73.3
Q ss_pred CCCcEEEEe-cCCeEEEEe-CCeEEEEEecCCCce-e----ceEEcCCCc---EEEEeCC----C--ceEEEc-CCC-eE
Q 017520 88 KNGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTL-V----GLTSTKEGH---LIICDNA----N--GLHKVS-EDG-VE 149 (370)
Q Consensus 88 ~~G~l~v~~-~~g~I~~~~-~g~~~~~~~~~~~p~-~----gl~~d~~G~---L~v~~~~----~--gi~~~~-~~g-~~ 149 (370)
+...+++++ .+++++.|+ +|+...... .++++ . ++.. .|. |.++... . .+++++ .+| ++
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~-~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLP-VGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE--SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeec-CCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 344567666 778899999 887555442 34554 0 2333 232 4444322 1 367777 456 65
Q ss_pred EEEeecC--CcccccccceEE--cC-CCcEEEEeCCCCCCCccceecccccCCCceEE--EEe-CCCCeE-----EEEec
Q 017520 150 NFLSYVN--GSKLRFANDVVE--AS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL--KYD-PSSNIT-----TLVAD 216 (370)
Q Consensus 150 ~~~~~~~--g~~~~~~~~l~~--d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~--~~d-~~t~~~-----~~~~~ 216 (370)
.+..... ...+..+.+++. ++ +|.+|+-... .+|.+. ++. ...+.+ +. +.
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~~~~~g~v~~~lVR~-f~ 205 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELTDDGDGKVSATLVRE-FK 205 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEEE-TTSSEEEEEEEE-EE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEEeCCCCcEeeEEEEE-ec
Confidence 5432110 012234667776 33 5766665332 223333 332 222322 22 22
Q ss_pred CCCCccceEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520 217 GFYFANGVALSRDEDYVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 217 ~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~ 249 (370)
....+.|+++|.....||+++... ||+|+.+..
T Consensus 206 ~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~ 239 (381)
T PF02333_consen 206 VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPE 239 (381)
T ss_dssp -SS-EEEEEEETTTTEEEEEETTTEEEEEESSCC
T ss_pred CCCcceEEEEecccCCEEEecCccEEEEEecCCC
Confidence 345789999999888999999988 999998643
No 131
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.27 E-value=0.34 Score=50.95 Aligned_cols=146 Identities=14% Similarity=0.070 Sum_probs=84.8
Q ss_pred CcceEEcCCCcEE-EEecCCeEEEEe-CC-----eE----EEEEecCCCceeceEEcCC-CcEEEEeCCCceEE-Ec-CC
Q 017520 81 PEDASMDKNGVIY-TATRDGWIKRLQ-DG-----TW----VNWKFIDSQTLVGLTSTKE-GHLIICDNANGLHK-VS-ED 146 (370)
Q Consensus 81 P~~i~~d~~G~l~-v~~~~g~I~~~~-~g-----~~----~~~~~~~~~p~~gl~~d~~-G~L~v~~~~~gi~~-~~-~~ 146 (370)
-.+++++++|.+. ++..++.|..|+ .. .. ........... ++++.+. +...++....|.++ ++ .+
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~las~~~Dg~v~lWd~~~ 564 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS-GICWNSYIKSQVASSNFEGVVQVWDVAR 564 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee-eEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence 4568889988755 555889999887 22 10 00111122344 7777653 45444433445444 45 44
Q ss_pred C--eEEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccc
Q 017520 147 G--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG 223 (370)
Q Consensus 147 g--~~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~g 223 (370)
+ +..+ .+. ...+..+++++ +|.++++.+ .++.|..||..++..............
T Consensus 565 ~~~~~~~----~~H-~~~V~~l~~~p~~~~~L~Sgs-----------------~Dg~v~iWd~~~~~~~~~~~~~~~v~~ 622 (793)
T PLN00181 565 SQLVTEM----KEH-EKRVWSIDYSSADPTLLASGS-----------------DDGSVKLWSINQGVSIGTIKTKANICC 622 (793)
T ss_pred CeEEEEe----cCC-CCCEEEEEEcCCCCCEEEEEc-----------------CCCEEEEEECCCCcEEEEEecCCCeEE
Confidence 5 3322 111 13578899986 678777754 357788899876654332222233445
Q ss_pred eEEc-cCCCEEEEEeCCc-EEEEEeCCC
Q 017520 224 VALS-RDEDYVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 224 i~~~-~dg~~l~v~~~~~-l~~~~~~~~ 249 (370)
+.+. +++..+.++...+ |..||+...
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~ 650 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNP 650 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 6664 4677677776666 999997643
No 132
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.25 E-value=0.14 Score=46.81 Aligned_cols=150 Identities=12% Similarity=0.102 Sum_probs=88.5
Q ss_pred ecCCCceeceEEcCCCcEEEEeCC--CceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccce
Q 017520 114 FIDSQTLVGLTSTKEGHLIICDNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC 189 (370)
Q Consensus 114 ~~~~~p~~gl~~d~~G~L~v~~~~--~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~ 189 (370)
.++..|...|...+||..|+.... ..|...+ .+| ...+.. .......-+-++|||...|+..
T Consensus 192 ~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~----~glgg~slLkwSPdgd~lfaAt---------- 257 (445)
T KOG2139|consen 192 DPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP----KGLGGFSLLKWSPDGDVLFAAT---------- 257 (445)
T ss_pred CCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc----cCCCceeeEEEcCCCCEEEEec----------
Confidence 334445447888999998887554 3466666 455 333321 1123455688999998777753
Q ss_pred ecccccCCCceEEEEeC--CCCeEEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCC--C----Ccee--ee
Q 017520 190 LDILEGKPHGQLLKYDP--SSNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGER--K----GKLE--TF 257 (370)
Q Consensus 190 ~~~~~~~~~g~l~~~d~--~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~--~----~~~~--~~ 257 (370)
. .+++++-. ++...+...-+-....+-+++|+|++|+++-.+. |+....++.. . +..+ ..
T Consensus 258 -------~-davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lli 329 (445)
T KOG2139|consen 258 -------C-DAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLI 329 (445)
T ss_pred -------c-cceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeee
Confidence 2 23444332 2222222222333667889999999999998877 7776554431 0 0001 11
Q ss_pred cc-----------CCCCCCCceeECCCCCEEEEEecCch
Q 017520 258 AE-----------NLPGAPDNINLAPDGTFWIAIIKLDA 285 (370)
Q Consensus 258 ~~-----------~~~g~p~~i~~d~~G~lwv~~~~~~~ 285 (370)
.+ ...|.+.-++.|+.|++.+.+..+.+
T Consensus 330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred ccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 11 01245666999999998888877754
No 133
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.24 E-value=0.019 Score=56.65 Aligned_cols=123 Identities=20% Similarity=0.344 Sum_probs=71.7
Q ss_pred cccccccceEEcCC-CcEEEEeCCCCCC-Cccc-eecccccCCCceEEEEeCCCC-------eEEEEe------------
Q 017520 158 SKLRFANDVVEASD-GSLYFTVSSSKYL-PHEY-CLDILEGKPHGQLLKYDPSSN-------ITTLVA------------ 215 (370)
Q Consensus 158 ~~~~~~~~l~~d~~-G~l~v~d~~~~~~-~~~~-~~~~~~~~~~g~l~~~d~~t~-------~~~~~~------------ 215 (370)
.++.-+.++.+++. |.+||+.++..-. .... ..........|.|++++++.+ .++.+.
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 45778899999984 7999997642210 0000 001112345689999998755 333332
Q ss_pred ------cCCCCccceEEccCCCEEEEEeCCc---EE---------EEE----------eCCCCCCceeeecc-CCCCCCC
Q 017520 216 ------DGFYFANGVALSRDEDYVVVCESWK---CR---------KYW----------LKGERKGKLETFAE-NLPGAPD 266 (370)
Q Consensus 216 ------~~~~~p~gi~~~~dg~~l~v~~~~~---l~---------~~~----------~~~~~~~~~~~~~~-~~~g~p~ 266 (370)
..+.+|.+|+++++|+ ||+++..+ .. .|. ..+...+....|.. .......
T Consensus 427 ~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~t 505 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEIT 505 (524)
T ss_pred cCcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccc
Confidence 1256789999999999 78877554 21 011 11223334444432 1223466
Q ss_pred ceeECCCCC-EEEEEe
Q 017520 267 NINLAPDGT-FWIAII 281 (370)
Q Consensus 267 ~i~~d~~G~-lwv~~~ 281 (370)
|+++++||+ +||...
T Consensus 506 G~~fspDg~tlFvniQ 521 (524)
T PF05787_consen 506 GPCFSPDGRTLFVNIQ 521 (524)
T ss_pred cceECCCCCEEEEEEe
Confidence 788999995 777643
No 134
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.23 E-value=0.017 Score=57.25 Aligned_cols=181 Identities=12% Similarity=0.080 Sum_probs=107.3
Q ss_pred eEEcCCCcEEEEe-cCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc---CCC-eEEEEeec
Q 017520 84 ASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS---EDG-VENFLSYV 155 (370)
Q Consensus 84 i~~d~~G~l~v~~-~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~---~~g-~~~~~~~~ 155 (370)
..+.++.+..+.+ .|+.|.-|. +-. ...+. ....|.-.+.|.|-|.-+++....+..++. .+- .+.++..
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh- 534 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH- 534 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc-
Confidence 3445555555444 556666555 222 22222 222332156777776655554444555554 222 4544433
Q ss_pred CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-cceEEccCCCEEE
Q 017520 156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVV 234 (370)
Q Consensus 156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-~gi~~~~dg~~l~ 234 (370)
+..+..+.+.|+.+...+- + .+.++..||..+|....++.+...| ..++++|+|++|.
T Consensus 535 ----lsDV~cv~FHPNs~Y~aTG-S----------------sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 535 ----LSDVDCVSFHPNSNYVATG-S----------------SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred ----ccccceEEECCcccccccC-C----------------CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe
Confidence 2356668888887754443 3 3457888888877766666665544 6799999999777
Q ss_pred EEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCch-hHHHh
Q 017520 235 VCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDA-RRMKI 290 (370)
Q Consensus 235 v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~-~~~~~ 290 (370)
-+...+ |..||+.+.+. ...+.. ..+...-+.++.||++.++..+..+ .+||+
T Consensus 594 Sg~ed~~I~iWDl~~~~~--v~~l~~-Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 594 SGDEDGLIKIWDLANGSL--VKQLKG-HTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred ecccCCcEEEEEcCCCcc--hhhhhc-ccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 777777 88888765321 222222 2455677889999999998766543 44443
No 135
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.21 E-value=0.0005 Score=38.71 Aligned_cols=25 Identities=28% Similarity=0.520 Sum_probs=16.1
Q ss_pred CCCcceEEcCCCcEEEEe-cCCeEEE
Q 017520 79 NHPEDASMDKNGVIYTAT-RDGWIKR 103 (370)
Q Consensus 79 ~~P~~i~~d~~G~l~v~~-~~g~I~~ 103 (370)
..|.+|++|++|+|||++ .+++|.+
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEE
Confidence 456777777777777776 4555554
No 136
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.14 E-value=0.23 Score=48.09 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=45.8
Q ss_pred CceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCC--c--EEE--EEeCCCCCCceeeeccCCCCCCCceeEC
Q 017520 198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--K--CRK--YWLKGERKGKLETFAENLPGAPDNINLA 271 (370)
Q Consensus 198 ~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~--~--l~~--~~~~~~~~~~~~~~~~~~~g~p~~i~~d 271 (370)
...||.++.++++.+.+...-......+++|||+.|.++... . ++. ++++....+..+.+.....+.....+++
T Consensus 210 ~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS 289 (428)
T PRK01029 210 VPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS 289 (428)
T ss_pred CceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence 457999999888776665432233457899999888877632 2 554 4554322223333332222223456778
Q ss_pred CCCC
Q 017520 272 PDGT 275 (370)
Q Consensus 272 ~~G~ 275 (370)
+||+
T Consensus 290 PDG~ 293 (428)
T PRK01029 290 PDGT 293 (428)
T ss_pred CCCC
Confidence 8886
No 137
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.14 E-value=0.012 Score=50.98 Aligned_cols=172 Identities=9% Similarity=0.095 Sum_probs=90.1
Q ss_pred CcceEEcCC-CcEEEEecCCeEEEE-e-CC---eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEE
Q 017520 81 PEDASMDKN-GVIYTATRDGWIKRL-Q-DG---TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENF 151 (370)
Q Consensus 81 P~~i~~d~~-G~l~v~~~~g~I~~~-~-~g---~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~ 151 (370)
...++++.| .+|..|..+. |+|+ + +. ..+.+....+.....+....|..++-+...+.|..+| ++| ++.+
T Consensus 103 vk~~af~~ds~~lltgg~ek-llrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL 181 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLTGGQEK-LLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL 181 (334)
T ss_pred eeeEEecccchhhhccchHH-HhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE
Confidence 344666654 3566665443 4443 3 21 2233322222222012223344444433334555566 677 4433
Q ss_pred EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCC
Q 017520 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED 231 (370)
Q Consensus 152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~ 231 (370)
... ..++.+.+.+||++..... .+.|.-+|+++-..-.-..--...+...++|+..
T Consensus 182 ~~~------s~VtSlEvs~dG~ilTia~------------------gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~ 237 (334)
T KOG0278|consen 182 EFN------SPVTSLEVSQDGRILTIAY------------------GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKE 237 (334)
T ss_pred ecC------CCCcceeeccCCCEEEEec------------------CceeEEeccccccceeeccCccccccccccCCCc
Confidence 211 3678899999998655432 2467777775433221112223445667889885
Q ss_pred EEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520 232 YVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 280 (370)
Q Consensus 232 ~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~ 280 (370)
+||+.... +++||..++. +...+....+|-..-+.++++|.+|..-
T Consensus 238 -~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 238 -FFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASG 285 (334)
T ss_pred -eEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeecc
Confidence 78887655 9999987542 2333323344434456677777777654
No 138
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.14 E-value=0.16 Score=44.63 Aligned_cols=142 Identities=11% Similarity=0.123 Sum_probs=82.1
Q ss_pred CCcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCCCce-eceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEEe
Q 017520 80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTL-VGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLS 153 (370)
Q Consensus 80 ~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~-~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~ 153 (370)
.|--+.-|..-.+|+|+..+.+..+| .|+...-...+.+.- +.+.+ .+-+.++-+.+++|.+. ++| ...+..
T Consensus 14 spLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vv--gdfVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 14 SPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVV--GDFVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred CcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEE--CCEEEEEEccCcEEEEEecchhheeeeee
Confidence 45555556677899999999999999 676543322233322 02333 22366666667788888 777 222211
Q ss_pred ecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc----cceEEcc
Q 017520 154 YVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA----NGVALSR 228 (370)
Q Consensus 154 ~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p----~gi~~~~ 228 (370)
. +... ..-..|.++ -||.+.. ++..|.+|+.+..... . .+.+ .+-++++
T Consensus 92 ~-~~vk----~~a~~d~~~glIycgsh------------------d~~~yalD~~~~~cVy-k--skcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 92 L-ETVK----VRAQCDFDGGLIYCGSH------------------DGNFYALDPKTYGCVY-K--SKCGGGTFVSPVIAP 145 (354)
T ss_pred h-hhhc----cceEEcCCCceEEEecC------------------CCcEEEecccccceEE-e--cccCCceeccceecC
Confidence 1 1000 122556654 6888853 4678888887654422 1 2223 3345666
Q ss_pred CCCEEEEEeCCc-EEEEEeCCC
Q 017520 229 DEDYVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 229 dg~~l~v~~~~~-l~~~~~~~~ 249 (370)
-...||++.+.+ +.+...+..
T Consensus 146 g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 146 GDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred CCceEEEEeccceEEEEccCCC
Confidence 333599999988 888876543
No 139
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.12 E-value=0.16 Score=44.51 Aligned_cols=136 Identities=19% Similarity=0.167 Sum_probs=77.6
Q ss_pred cEEEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCC-cEEEEeCCCceEEEc-C-CCeEEEEeecCCccccccc
Q 017520 91 VIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEG-HLIICDNANGLHKVS-E-DGVENFLSYVNGSKLRFAN 164 (370)
Q Consensus 91 ~l~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G-~L~v~~~~~gi~~~~-~-~g~~~~~~~~~g~~~~~~~ 164 (370)
.+.+|..+|.+|.++ +|+. -.+.. .+..-..-..|.++ -+|.+..++..+.+| + .+ -+....-.|.-+.+|
T Consensus 65 fVV~GCy~g~lYfl~~~tGs~~w~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~f~sP- 141 (354)
T KOG4649|consen 65 FVVLGCYSGGLYFLCVKTGSQIWNFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFVSP- 141 (354)
T ss_pred EEEEEEccCcEEEEEecchhheeeeee-hhhhccceEEcCCCceEEEecCCCcEEEecccccc-eEEecccCCceeccc-
Confidence 466777788898888 6632 22221 11111022234444 678888888899998 3 33 111123344444455
Q ss_pred ceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec------CCCCc----cceEE-ccCCCE
Q 017520 165 DVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD------GFYFA----NGVAL-SRDEDY 232 (370)
Q Consensus 165 ~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~------~~~~p----~gi~~-~~dg~~ 232 (370)
++++ +|.||++..+ |.|++.++++...+.+.. -+..| ..+.+ .-||+.
T Consensus 142 --~i~~g~~sly~a~t~------------------G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l 201 (354)
T KOG4649|consen 142 --VIAPGDGSLYAAITA------------------GAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVL 201 (354)
T ss_pred --eecCCCceEEEEecc------------------ceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEE
Confidence 7777 8899999653 789998887664443321 11122 11222 247776
Q ss_pred EEEEeCCc-EEEEEeCCC
Q 017520 233 VVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 233 l~v~~~~~-l~~~~~~~~ 249 (370)
+-+++.++ ||||.-+|+
T Consensus 202 ~~f~~sG~qvwr~~t~Gp 219 (354)
T KOG4649|consen 202 TSFDESGRQVWRPATKGP 219 (354)
T ss_pred EEEcCCCcEEEeecCCCc
Confidence 66776666 888876654
No 140
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.08 E-value=0.073 Score=46.28 Aligned_cols=133 Identities=12% Similarity=0.170 Sum_probs=84.7
Q ss_pred CCCcEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC---eEEEEeecCCccccc
Q 017520 88 KNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG---VENFLSYVNGSKLRF 162 (370)
Q Consensus 88 ~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g---~~~~~~~~~g~~~~~ 162 (370)
.|..+..++.++.|..|| +|+...-......+. ++-+.++|++.....+.+|...+.+. ++.+.-. -.
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P------~n 226 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP------CN 226 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEecCCCCc-ceeeccCCCEEEEecCceeEEeccccccceeeccCc------cc
Confidence 344555556778888888 776554444444566 89999999988877666777777443 3322111 12
Q ss_pred ccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-ecCCCCc-cceEEccCCCEEEEEeCCc
Q 017520 163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFA-NGVALSRDEDYVVVCESWK 240 (370)
Q Consensus 163 ~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~p-~gi~~~~dg~~l~v~~~~~ 240 (370)
++.-...|+-.+||+-. ....+++||-.|+.-... ..+...| ..+.++|||. +|.+.+..
T Consensus 227 V~SASL~P~k~~fVaGg-----------------ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSED 288 (334)
T KOG0278|consen 227 VESASLHPKKEFFVAGG-----------------EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSED 288 (334)
T ss_pred cccccccCCCceEEecC-----------------cceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCC
Confidence 33445567778888843 346799999888754433 2333344 5688999998 88887655
Q ss_pred -EEEEE
Q 017520 241 -CRKYW 245 (370)
Q Consensus 241 -l~~~~ 245 (370)
-.|+|
T Consensus 289 GTirlW 294 (334)
T KOG0278|consen 289 GTIRLW 294 (334)
T ss_pred ceEEEE
Confidence 33444
No 141
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.16 Score=45.24 Aligned_cols=161 Identities=18% Similarity=0.161 Sum_probs=81.3
Q ss_pred eEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE---EecCCCCccceEEccCCCEEEEEeCCcE
Q 017520 166 VVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL---VADGFYFANGVALSRDEDYVVVCESWKC 241 (370)
Q Consensus 166 l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~---~~~~~~~p~gi~~~~dg~~l~v~~~~~l 241 (370)
=++++||. ||.|... + ....|.|-.||.. ..... +.+....|.-+.+.+||+.+.+++- +|
T Consensus 119 Gvfs~dG~~LYATEnd----f---------d~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG-GI 183 (366)
T COG3490 119 GVFSPDGRLLYATEND----F---------DPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG-GI 183 (366)
T ss_pred cccCCCCcEEEeecCC----C---------CCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCC-ce
Confidence 47789997 5555321 1 1134556667765 22222 2233456888999999997777663 22
Q ss_pred EEE--------EeCC--CC-------CCce-eeeccCCC-----CCCCceeECCCCCEEEEEec--CchhHHHhhhcchh
Q 017520 242 RKY--------WLKG--ER-------KGKL-ETFAENLP-----GAPDNINLAPDGTFWIAIIK--LDARRMKILNSSKL 296 (370)
Q Consensus 242 ~~~--------~~~~--~~-------~~~~-~~~~~~~~-----g~p~~i~~d~~G~lwv~~~~--~~~~~~~~~~~~~~ 296 (370)
..- +++. +. .++. ++ ..+| -..+-+.++.||++|.++.- .++..-++++....
T Consensus 184 ethpdfgR~~lNldsMePSlvlld~atG~liek--h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~ 261 (366)
T COG3490 184 ETHPDFGRTELNLDSMEPSLVLLDAATGNLIEK--HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRK 261 (366)
T ss_pred ecccccCccccchhhcCccEEEEeccccchhhh--ccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccC
Confidence 211 1110 00 0000 00 0111 01344778999999999843 23333333221111
Q ss_pred HHHH-HHhCCccc--------cccccCCCceEEEEECCCCcEEEEEeCCCCCcccc
Q 017520 297 IKHV-LAAYPKLF--------SQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSF 343 (370)
Q Consensus 297 ~~~~-~~~~~~~~--------~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~ 343 (370)
-+.+ ...+|+.. ..+..+...+.|..-+|.|+....+....|.+...
T Consensus 262 g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 262 GEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred CCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 1110 01122211 11233566677777788888888888878864443
No 142
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=97.00 E-value=0.064 Score=51.14 Aligned_cols=142 Identities=16% Similarity=0.087 Sum_probs=83.0
Q ss_pred eEEcCCCcEEEEecCCeEEEEe-CCe--EEEEEecCC-CceeceEEcCCCcEEEEeCCCceEEEcCCC--eE--EEEeec
Q 017520 84 ASMDKNGVIYTATRDGWIKRLQ-DGT--WVNWKFIDS-QTLVGLTSTKEGHLIICDNANGLHKVSEDG--VE--NFLSYV 155 (370)
Q Consensus 84 i~~d~~G~l~v~~~~g~I~~~~-~g~--~~~~~~~~~-~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~--~~~~~~ 155 (370)
+...++|.+++....|.+++-. +|. ++....... ... ++.+.++|.+|++...++++.-..+| .+ .+....
T Consensus 244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~-~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~ 322 (398)
T PLN00033 244 VNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQ-NMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEAD 322 (398)
T ss_pred EEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCcccee-eeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecc
Confidence 3455778888777778788766 553 354433332 344 88888999999988666666665555 21 232211
Q ss_pred CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe--cCCC-CccceEEccCCCE
Q 017520 156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFY-FANGVALSRDEDY 232 (370)
Q Consensus 156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~~-~p~gi~~~~dg~~ 232 (370)
.......+.++.+.+++++|++-. .|.+++-....+.++... +.+. .-..+.+..+++
T Consensus 323 ~~~~~~~l~~v~~~~d~~~~a~G~------------------~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~- 383 (398)
T PLN00033 323 IKSRGFGILDVGYRSKKEAWAAGG------------------SGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKK- 383 (398)
T ss_pred cCCCCcceEEEEEcCCCcEEEEEC------------------CCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCc-
Confidence 111113467788888999999843 245555544433334332 1211 123666666666
Q ss_pred EEEEeCCc-EEEEE
Q 017520 233 VVVCESWK-CRKYW 245 (370)
Q Consensus 233 l~v~~~~~-l~~~~ 245 (370)
.|+....+ |.||.
T Consensus 384 g~~~G~~G~il~~~ 397 (398)
T PLN00033 384 GFVLGNDGVLLRYL 397 (398)
T ss_pred eEEEeCCcEEEEeC
Confidence 77777666 77763
No 143
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.99 E-value=0.038 Score=54.81 Aligned_cols=110 Identities=13% Similarity=0.189 Sum_probs=63.0
Q ss_pred EEEEEecCCCceeceEEcCCCc-EEEEeCCC-ceEEEc-CCCe----------EEEEee-cCCcccccccceEEcCCCcE
Q 017520 109 WVNWKFIDSQTLVGLTSTKEGH-LIICDNAN-GLHKVS-EDGV----------ENFLSY-VNGSKLRFANDVVEASDGSL 174 (370)
Q Consensus 109 ~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~-gi~~~~-~~g~----------~~~~~~-~~g~~~~~~~~l~~d~~G~l 174 (370)
+..+...+.+|+ |+.++|||. +|++.... -+-.+| .+.. ..+... .-| ..|-..++|.+|+.
T Consensus 313 v~~yIPVGKsPH-GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG---lGPLHTaFDg~G~a 388 (635)
T PRK02888 313 LTRYVPVPKNPH-GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG---LGPLHTAFDGRGNA 388 (635)
T ss_pred eEEEEECCCCcc-ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC---CCcceEEECCCCCE
Confidence 445556778899 999999996 67765443 355555 2211 111111 112 35667899999999
Q ss_pred EEEeCCCCCCCccceecccccCCCceEEEEeCCC-------CeEEEEe---cCCCCc------cceEEccCCCEEEEEeC
Q 017520 175 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-------NITTLVA---DGFYFA------NGVALSRDEDYVVVCES 238 (370)
Q Consensus 175 ~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-------~~~~~~~---~~~~~p------~gi~~~~dg~~l~v~~~ 238 (370)
|.+-. -+..|.+||.++ .++..+. +-.+.| .|=..++||++|+..+-
T Consensus 389 ytslf-----------------~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 389 YTTLF-----------------LDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred EEeEe-----------------ecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 98843 234677777643 1111111 122333 34445889997776664
Q ss_pred C
Q 017520 239 W 239 (370)
Q Consensus 239 ~ 239 (370)
.
T Consensus 452 ~ 452 (635)
T PRK02888 452 F 452 (635)
T ss_pred c
Confidence 3
No 144
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.98 E-value=0.028 Score=52.95 Aligned_cols=176 Identities=14% Similarity=0.217 Sum_probs=103.9
Q ss_pred CcceEEcCCCcEE-EEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCC-cEEEEeC-CCceEEEc-CCC--eEEEE
Q 017520 81 PEDASMDKNGVIY-TATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDN-ANGLHKVS-EDG--VENFL 152 (370)
Q Consensus 81 P~~i~~d~~G~l~-v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~~~-~~gi~~~~-~~g--~~~~~ 152 (370)
-.++.+..+|.=+ .++-|..|.-|| +|....-....-.|. .+.+.+|+ +++++.. .+.|..+| ++| ++.+
T Consensus 261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~-cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY- 338 (503)
T KOG0282|consen 261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT-CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY- 338 (503)
T ss_pred hhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce-eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH-
Confidence 3455666666433 334566666677 676555445555677 89999988 7766544 46799998 777 3322
Q ss_pred eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe--cCCCCccceEEccCC
Q 017520 153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDE 230 (370)
Q Consensus 153 ~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~~~p~gi~~~~dg 230 (370)
+..+..++++.+=++|+=+|+.+ ....+..++-.......+. .....--.+.+.|.+
T Consensus 339 ----d~hLg~i~~i~F~~~g~rFissS-----------------Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~ 397 (503)
T KOG0282|consen 339 ----DRHLGAILDITFVDEGRRFISSS-----------------DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNG 397 (503)
T ss_pred ----HhhhhheeeeEEccCCceEeeec-----------------cCccEEEEEcCCCccchhhcchhhccCcceecCCCC
Confidence 23346788999988998888765 2345555554333211111 111111246778888
Q ss_pred CEEEEEeCCc--EEEEEeCCC-CCCceeeecc-CCCCCCCceeECCCCCEEEEE
Q 017520 231 DYVVVCESWK--CRKYWLKGE-RKGKLETFAE-NLPGAPDNINLAPDGTFWIAI 280 (370)
Q Consensus 231 ~~l~v~~~~~--l~~~~~~~~-~~~~~~~~~~-~~~g~p~~i~~d~~G~lwv~~ 280 (370)
+ ++.+.+.. |..|..... +....+.|.. ..+|++-.+.+++||.+.+.-
T Consensus 398 ~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG 450 (503)
T KOG0282|consen 398 K-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG 450 (503)
T ss_pred C-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEee
Confidence 7 55555443 666654332 2333333422 356788889999999766654
No 145
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.018 Score=48.73 Aligned_cols=103 Identities=22% Similarity=0.304 Sum_probs=66.0
Q ss_pred CCCceeceEEcCCCcEEEEeCCCceEEEcCCC---eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecc
Q 017520 116 DSQTLVGLTSTKEGHLIICDNANGLHKVSEDG---VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDI 192 (370)
Q Consensus 116 ~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g---~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~ 192 (370)
.|.-. |++.| +.+|+.++...-+...|+.- ...+.-..+|.|....|.+.. -||.+|.-..
T Consensus 130 ~GeGW-gLt~d-~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw------------- 193 (262)
T COG3823 130 EGEGW-GLTSD-DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVW------------- 193 (262)
T ss_pred CCcce-eeecC-CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeee-------------
Confidence 45667 88887 44688887554455555321 122212236667777777755 3576665432
Q ss_pred cccCCCceEEEEeCCCCeEEEEec-------------CCCCccceEEccCCCEEEEEeC
Q 017520 193 LEGKPHGQLLKYDPSSNITTLVAD-------------GFYFANGVALSRDEDYVVVCES 238 (370)
Q Consensus 193 ~~~~~~g~l~~~d~~t~~~~~~~~-------------~~~~p~gi~~~~dg~~l~v~~~ 238 (370)
.+.+|.|++|++|++....+ ...-.||||.+++++.+|++.-
T Consensus 194 ----~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 194 ----QTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ----eecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 23578999999998765432 1235799999999988998875
No 146
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.96 E-value=0.28 Score=44.50 Aligned_cols=121 Identities=20% Similarity=0.231 Sum_probs=68.7
Q ss_pred EEEEe-cCCeEEEEe---CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CC-----C------eEEEEee-
Q 017520 92 IYTAT-RDGWIKRLQ---DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-ED-----G------VENFLSY- 154 (370)
Q Consensus 92 l~v~~-~~g~I~~~~---~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~-----g------~~~~~~~- 154 (370)
|-+++ +.|++..+. +|.+........+|. |++.+ .++||++.. ..|.++. .. + -..+.+.
T Consensus 20 la~sTYQagkL~~ig~~~~g~l~~~~r~F~r~M-Gl~~~-~~~l~~~t~-~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~ 96 (335)
T TIGR03032 20 LAVTTYQAGKLFFIGLQPNGELDVFERTFPRPM-GLAVS-PQSLTLGTR-YQLWRFANVDNLLPAGQTHPGYDRLYVPRA 96 (335)
T ss_pred EEEEeeecceEEEEEeCCCCcEEEEeeccCccc-eeeee-CCeEEEEEc-ceeEEcccccccccccccCCCCCeEEeeee
Confidence 34444 455565553 566666666677899 99997 468999874 4688882 11 1 1111110
Q ss_pred --cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE----------ecCCCCcc
Q 017520 155 --VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----------ADGFYFAN 222 (370)
Q Consensus 155 --~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~----------~~~~~~p~ 222 (370)
..| .-.+++|++ .++.+||.++. -..|..+++. -.+... ..+-..=|
T Consensus 97 ~~~TG--didiHdia~-~~~~l~fVNT~-----------------fSCLatl~~~-~SF~P~WkPpFIs~la~eDRCHLN 155 (335)
T TIGR03032 97 SYVTG--DIDAHDLAL-GAGRLLFVNTL-----------------FSCLATVSPD-YSFVPLWKPPFISKLAPEDRCHLN 155 (335)
T ss_pred eeecc--Ccchhheee-cCCcEEEEECc-----------------ceeEEEECCC-CccccccCCccccccCccCceeec
Confidence 111 125678899 67789998763 1345555553 222211 11223458
Q ss_pred ceEEccCCCEEEEEe
Q 017520 223 GVALSRDEDYVVVCE 237 (370)
Q Consensus 223 gi~~~~dg~~l~v~~ 237 (370)
|+|+. ||+--||+-
T Consensus 156 GlA~~-~g~p~yVTa 169 (335)
T TIGR03032 156 GMALD-DGEPRYVTA 169 (335)
T ss_pred ceeee-CCeEEEEEE
Confidence 99885 566677765
No 147
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=96.95 E-value=0.3 Score=44.75 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=29.3
Q ss_pred cccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec
Q 017520 162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD 216 (370)
Q Consensus 162 ~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~ 216 (370)
++|+|..+++|++.|+.. ....|+++|++++++.-...
T Consensus 145 HiNsV~~~~~G~yLiS~R-----------------~~~~i~~I~~~tG~I~W~lg 182 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSR-----------------NTSTIYKIDPSTGKIIWRLG 182 (299)
T ss_pred EeeeeeecCCccEEEEec-----------------ccCEEEEEECCCCcEEEEeC
Confidence 678899999999888854 34579999988887765543
No 148
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.93 E-value=0.51 Score=46.98 Aligned_cols=160 Identities=12% Similarity=0.049 Sum_probs=83.3
Q ss_pred eEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCC-----CceeceEEcCCCcEEEEeC------CCceEEEc-CCC-e
Q 017520 84 ASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS-----QTLVGLTSTKEGHLIICDN------ANGLHKVS-EDG-V 148 (370)
Q Consensus 84 i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~-----~p~~gl~~d~~G~L~v~~~------~~gi~~~~-~~g-~ 148 (370)
+++. ++.+|+++.+|.|+.+| +|+...-..... .......+. +|.+|++.. .+.|+.++ ++| .
T Consensus 116 ~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~ 193 (527)
T TIGR03075 116 VALY-DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKL 193 (527)
T ss_pred ceEE-CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCce
Confidence 3443 57899999999999999 787543222111 011012222 678888753 24588888 678 3
Q ss_pred EEEEeecCCc--------------c--------------cccccceEEcCC-CcEEEEeCCCCCCCccceeccccc--CC
Q 017520 149 ENFLSYVNGS--------------K--------------LRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEG--KP 197 (370)
Q Consensus 149 ~~~~~~~~g~--------------~--------------~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~--~~ 197 (370)
..-....+.. + -+....+++|++ |.+|+...+-.- |....... .-
T Consensus 194 lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p----~~~~~r~gdnl~ 269 (527)
T TIGR03075 194 VWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSP----WNSHLRPGDNLY 269 (527)
T ss_pred eEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCC----CCCCCCCCCCcc
Confidence 3221111100 0 012235788874 679998754110 11011001 12
Q ss_pred CceEEEEeCCCCeEEEEecC-------CCC---ccceEEccCCC---EEEEEeCCc-EEEEEeCCC
Q 017520 198 HGQLLKYDPSSNITTLVADG-------FYF---ANGVALSRDED---YVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 198 ~g~l~~~d~~t~~~~~~~~~-------~~~---p~gi~~~~dg~---~l~v~~~~~-l~~~~~~~~ 249 (370)
...|+.+|.+||+..-.... ... |.-+.+..+|+ .+......+ ++.+|..+.
T Consensus 270 ~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG 335 (527)
T TIGR03075 270 TSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG 335 (527)
T ss_pred ceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCC
Confidence 44799999999987654321 111 22233334555 333444444 777776543
No 149
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=96.93 E-value=0.041 Score=50.51 Aligned_cols=183 Identities=19% Similarity=0.218 Sum_probs=102.6
Q ss_pred eEecCCCcCCCcceEEcCCCcEEEEecCCeEEEEe--CCeEEE-EEecCCCceece-----------EEcC---------
Q 017520 71 IKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGL-----------TSTK--------- 127 (370)
Q Consensus 71 ~~~~~~~~~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~-~~~~~~~p~~gl-----------~~d~--------- 127 (370)
.....|....-.+|....+|.||.|+.|+.|..|+ +|+.-. +.......+ .| +|++
T Consensus 240 ~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN-~lalsTdy~LRtgaf~~t~~~~~~~s 318 (480)
T KOG0271|consen 240 VRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVN-HLALSTDYVLRTGAFDHTGRKPKSFS 318 (480)
T ss_pred EEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchhee-eeeccchhhhhccccccccccCCChH
Confidence 33344555556777777899999999999999888 553211 000000000 00 1111
Q ss_pred ----------------CCcEEEEeCCC-ceEEEcCCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccce
Q 017520 128 ----------------EGHLIICDNAN-GLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC 189 (370)
Q Consensus 128 ----------------~G~L~v~~~~~-gi~~~~~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~ 189 (370)
.|+-.|...+. -++..++.. .+.+ ....|. ...+|.+.++|||+...+.+
T Consensus 319 e~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi-~rmtgH-q~lVn~V~fSPd~r~IASaS---------- 386 (480)
T KOG0271|consen 319 EEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI-TRMTGH-QALVNHVSFSPDGRYIASAS---------- 386 (480)
T ss_pred HHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccch-hhhhch-hhheeeEEECCCccEEEEee----------
Confidence 23334443333 233333322 1111 111221 24789999999998544433
Q ss_pred ecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCC
Q 017520 190 LDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPD 266 (370)
Q Consensus 190 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~ 266 (370)
.+..|-.+|..+|+.-..+.+ .....-++++.|.+ |+|+.+.. |.+|++...+ +...+||..|
T Consensus 387 -------FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkK------l~~DLpGh~D 452 (480)
T KOG0271|consen 387 -------FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKK------LKQDLPGHAD 452 (480)
T ss_pred -------cccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeee------ecccCCCCCc
Confidence 345677888888876433332 33446789999998 77777665 8888875432 2235777666
Q ss_pred cee-E--CCCCCEEEEE
Q 017520 267 NIN-L--APDGTFWIAI 280 (370)
Q Consensus 267 ~i~-~--d~~G~lwv~~ 280 (370)
.+. + .+||..-++.
T Consensus 453 EVf~vDwspDG~rV~sg 469 (480)
T KOG0271|consen 453 EVFAVDWSPDGQRVASG 469 (480)
T ss_pred eEEEEEecCCCceeecC
Confidence 643 3 5788766654
No 150
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.91 E-value=0.11 Score=47.44 Aligned_cols=150 Identities=15% Similarity=0.101 Sum_probs=87.8
Q ss_pred cCCCcCCCcceEEcCCCcEEEEe--cCCeEEEEe--CCeEEEEEe-cCCCceeceEEcCCC-cEEEEeCCCceEEEc-CC
Q 017520 74 GEGSVNHPEDASMDKNGVIYTAT--RDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEG-HLIICDNANGLHKVS-ED 146 (370)
Q Consensus 74 ~~~~~~~P~~i~~d~~G~l~v~~--~~g~I~~~~--~g~~~~~~~-~~~~p~~gl~~d~~G-~L~v~~~~~gi~~~~-~~ 146 (370)
..|.+.=-+++++|+. +=|+.+ .|+.|-.|| +|.++.-.. ...... ++++++-- .|+-+..+..|-++| +.
T Consensus 147 i~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr-~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVR-GVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheee-eeeecccCceEEEecCCCeeEEEechh
Confidence 3455556789999985 455544 777788888 777654332 233455 88887543 344444445566677 43
Q ss_pred C--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-cc
Q 017520 147 G--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NG 223 (370)
Q Consensus 147 g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-~g 223 (370)
. ++.+ .| .+..+..|+..|.-.+.++.+. +..+..+|..+........+...| +.
T Consensus 225 nkvIR~Y----hG-HlS~V~~L~lhPTldvl~t~gr-----------------Dst~RvWDiRtr~~V~~l~GH~~~V~~ 282 (460)
T KOG0285|consen 225 NKVIRHY----HG-HLSGVYCLDLHPTLDVLVTGGR-----------------DSTIRVWDIRTRASVHVLSGHTNPVAS 282 (460)
T ss_pred hhhHHHh----cc-ccceeEEEeccccceeEEecCC-----------------cceEEEeeecccceEEEecCCCCccee
Confidence 3 4433 22 1346777888777777777542 234556676665443344444444 33
Q ss_pred eEEcc-CCCEEEEEeCCc-EEEEEeCC
Q 017520 224 VALSR-DEDYVVVCESWK-CRKYWLKG 248 (370)
Q Consensus 224 i~~~~-dg~~l~v~~~~~-l~~~~~~~ 248 (370)
+...+ |++ +|-+.... |..+|+.-
T Consensus 283 V~~~~~dpq-vit~S~D~tvrlWDl~a 308 (460)
T KOG0285|consen 283 VMCQPTDPQ-VITGSHDSTVRLWDLRA 308 (460)
T ss_pred EEeecCCCc-eEEecCCceEEEeeecc
Confidence 43333 555 77777766 77787653
No 151
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.83 E-value=0.06 Score=50.56 Aligned_cols=145 Identities=19% Similarity=0.106 Sum_probs=86.7
Q ss_pred cceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEe-cCCCceeceEEcCCCcEEEEeCCCceEEEc-C--------CC-
Q 017520 82 EDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEGHLIICDNANGLHKVS-E--------DG- 147 (370)
Q Consensus 82 ~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~-~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~--------~g- 147 (370)
.+++-+++|+..++. ..|.||.|. +|+.-.+.. .-.... .|.|..||.++++....|.+.+. - ++
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~IT-cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~ 163 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSIT-CLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHS 163 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhcccee-EEEEeCCCcEEEecCCCccEEEEEEEeecccccCCC
Confidence 456667889777666 788999998 787433222 222234 89999999988877665543332 1 11
Q ss_pred eEEEEeecCCcccccccceEEcCCC---cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccce
Q 017520 148 VENFLSYVNGSKLRFANDVVEASDG---SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGV 224 (370)
Q Consensus 148 ~~~~~~~~~g~~~~~~~~l~~d~~G---~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi 224 (370)
...+. .+.+.. -.+.++.++..| ++|-+ + .+..+..||...+.+-.-..--..++.+
T Consensus 164 ~~p~~-~f~~Ht-lsITDl~ig~Gg~~~rl~Ta--S----------------~D~t~k~wdlS~g~LLlti~fp~si~av 223 (476)
T KOG0646|consen 164 VKPLH-IFSDHT-LSITDLQIGSGGTNARLYTA--S----------------EDRTIKLWDLSLGVLLLTITFPSSIKAV 223 (476)
T ss_pred cccee-eeccCc-ceeEEEEecCCCccceEEEe--c----------------CCceEEEEEeccceeeEEEecCCcceeE
Confidence 11100 011111 145566666544 33322 1 3456777887766543322223456789
Q ss_pred EEccCCCEEEEEeCCc-EEEEEeC
Q 017520 225 ALSRDEDYVVVCESWK-CRKYWLK 247 (370)
Q Consensus 225 ~~~~dg~~l~v~~~~~-l~~~~~~ 247 (370)
++||-++.+|+....+ |+..++-
T Consensus 224 ~lDpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 224 ALDPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred EEcccccEEEecCCcceEEeeehh
Confidence 9999999999999888 7776653
No 152
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.80 E-value=0.26 Score=47.16 Aligned_cols=189 Identities=16% Similarity=0.186 Sum_probs=97.8
Q ss_pred CcceEEcCCC-cEEEEecCCeEEEEe-CC---e---EEEEEecCC-CceeceEEcCCCcE-EEEeCCCceEEEcCCCeE-
Q 017520 81 PEDASMDKNG-VIYTATRDGWIKRLQ-DG---T---WVNWKFIDS-QTLVGLTSTKEGHL-IICDNANGLHKVSEDGVE- 149 (370)
Q Consensus 81 P~~i~~d~~G-~l~v~~~~g~I~~~~-~g---~---~~~~~~~~~-~p~~gl~~d~~G~L-~v~~~~~gi~~~~~~g~~- 149 (370)
...+++|+.| +++.|+-+..|..|| .| . ++.+.+... ... .+.+.+.|+. ++.........+|++|++
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~-sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~ 248 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQIN-SLQYSVTGDQILVVSGSAQAKLLDRDGFEI 248 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccc-eeeecCCCCeEEEEecCcceeEEccCCcee
Confidence 4558889888 677888888899998 44 2 233333333 345 8888888864 444433456667788822
Q ss_pred -EEEee---------cCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeC--CCCeEEEEec
Q 017520 150 -NFLSY---------VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP--SSNITTLVAD 216 (370)
Q Consensus 150 -~~~~~---------~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~--~t~~~~~~~~ 216 (370)
.+... ..| ....++...+.|+. ..+++.+ .+|.+..||. ...+.+++.+
T Consensus 249 ~e~~KGDQYI~Dm~nTKG-Hia~lt~g~whP~~k~~FlT~s-----------------~DgtlRiWdv~~~k~q~qVik~ 310 (641)
T KOG0772|consen 249 VEFSKGDQYIRDMYNTKG-HIAELTCGCWHPDNKEEFLTCS-----------------YDGTLRIWDVNNTKSQLQVIKT 310 (641)
T ss_pred eeeeccchhhhhhhccCC-ceeeeeccccccCcccceEEec-----------------CCCcEEEEecCCchhheeEEee
Confidence 22211 001 01122333444543 3445543 2344444443 2234444432
Q ss_pred C----CC-CccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCce-eeecc-CCCC-CCCceeECCCCCEEEEEecCc-hh
Q 017520 217 G----FY-FANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKL-ETFAE-NLPG-APDNINLAPDGTFWIAIIKLD-AR 286 (370)
Q Consensus 217 ~----~~-~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~-~~~~~-~~~g-~p~~i~~d~~G~lwv~~~~~~-~~ 286 (370)
. .. .+...+|++||+.+-.+-..+ |..|+. +...... ..+-+ ..+| -..-|.++.||++..+-.... ..
T Consensus 311 k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred ccCCCcccCceeeecCCCcchhhhcccCCceeeeec-CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 2 22 346678999999543333444 666664 2211111 11111 1221 345688999999888754332 34
Q ss_pred HHH
Q 017520 287 RMK 289 (370)
Q Consensus 287 ~~~ 289 (370)
+||
T Consensus 390 vWD 392 (641)
T KOG0772|consen 390 VWD 392 (641)
T ss_pred eee
Confidence 444
No 153
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=96.80 E-value=0.08 Score=47.14 Aligned_cols=143 Identities=17% Similarity=0.219 Sum_probs=91.9
Q ss_pred cceEEcCCCcEEEEe-cCCeEEEEe-CCeEEEE---EecCCCceeceEEcCCCcEEE-EeCCCceEEEc-CCC--eEEEE
Q 017520 82 EDASMDKNGVIYTAT-RDGWIKRLQ-DGTWVNW---KFIDSQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG--VENFL 152 (370)
Q Consensus 82 ~~i~~d~~G~l~v~~-~~g~I~~~~-~g~~~~~---~~~~~~p~~gl~~d~~G~L~v-~~~~~gi~~~~-~~g--~~~~~ 152 (370)
..+.++|+|..+++. .|..|+-|+ .|.-+.+ ....+... ++.+.+|++..+ +..+..++.+| ++| .+.+.
T Consensus 51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM-~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k 129 (338)
T KOG0265|consen 51 YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVM-ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK 129 (338)
T ss_pred EEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeE-eeeeccCCCEEEEecCCceEEEEecccceeeehhc
Confidence 346778899877665 788899999 5544333 23456677 888999997555 45557788888 777 33221
Q ss_pred eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCE
Q 017520 153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY 232 (370)
Q Consensus 153 ~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~ 232 (370)
.. ..++|.+.....|-..+...+ .++.+-.+|..++........-..-..+.|..++..
T Consensus 130 ~h-----~~~vNs~~p~rrg~~lv~Sgs----------------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~q 188 (338)
T KOG0265|consen 130 GH-----TSFVNSLDPSRRGPQLVCSGS----------------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQ 188 (338)
T ss_pred cc-----cceeeecCccccCCeEEEecC----------------CCceEEEEeecccchhhccccceeEEEEEecccccc
Confidence 11 246777776666766666544 567888888865544333333333456666666666
Q ss_pred EEEEeCCc-EEEEEe
Q 017520 233 VVVCESWK-CRKYWL 246 (370)
Q Consensus 233 l~v~~~~~-l~~~~~ 246 (370)
++.+.-++ |..+|+
T Consensus 189 v~sggIdn~ikvWd~ 203 (338)
T KOG0265|consen 189 VISGGIDNDIKVWDL 203 (338)
T ss_pred eeeccccCceeeecc
Confidence 66666666 777776
No 154
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.79 E-value=0.0026 Score=35.72 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=17.4
Q ss_pred ccccceEEcCCCcEEEEeC
Q 017520 161 RFANDVVEASDGSLYFTVS 179 (370)
Q Consensus 161 ~~~~~l~~d~~G~l~v~d~ 179 (370)
..|.+++++++|+||++|.
T Consensus 2 ~~P~gvav~~~g~i~VaD~ 20 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADS 20 (28)
T ss_dssp SSEEEEEEETTSEEEEEEC
T ss_pred cCCcEEEEeCCCCEEEEEC
Confidence 5789999999999999996
No 155
>PTZ00420 coronin; Provisional
Probab=96.79 E-value=0.22 Score=49.71 Aligned_cols=154 Identities=10% Similarity=0.055 Sum_probs=80.8
Q ss_pred CCcceEEcCCCcEE--EEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCC-ceEEEc-CCC--eEEE
Q 017520 80 HPEDASMDKNGVIY--TATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDG--VENF 151 (370)
Q Consensus 80 ~P~~i~~d~~G~l~--v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~-gi~~~~-~~g--~~~~ 151 (370)
...++++.+++... .++.+|.|..|+ +++...-........ ++.++++|.++++.... .|..+| +++ +..+
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~-SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLS-SLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEE-EEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 35678888877533 455789999999 454322122334566 89999999988866443 466666 566 3333
Q ss_pred EeecCCcc-cccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCC-CeEEEEecCCCC-ccc--eEE
Q 017520 152 LSYVNGSK-LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLVADGFYF-ANG--VAL 226 (370)
Q Consensus 152 ~~~~~g~~-~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-~~~~~~~~~~~~-p~g--i~~ 226 (370)
... .+.. ...+....+.+++..+++.+... .....|..||... +...... .+.. +.. ..+
T Consensus 206 ~gH-~g~~~s~~v~~~~fs~d~~~IlTtG~d~-------------~~~R~VkLWDlr~~~~pl~~~-~ld~~~~~L~p~~ 270 (568)
T PTZ00420 206 HIH-DGGKNTKNIWIDGLGGDDNYILSTGFSK-------------NNMREMKLWDLKNTTSALVTM-SIDNASAPLIPHY 270 (568)
T ss_pred ecc-cCCceeEEEEeeeEcCCCCEEEEEEcCC-------------CCccEEEEEECCCCCCceEEE-EecCCccceEEee
Confidence 211 1110 01111112346777666644210 0123578888763 2211111 1111 222 245
Q ss_pred ccCCCEEEEEeCCc--EEEEEeCCC
Q 017520 227 SRDEDYVVVCESWK--CRKYWLKGE 249 (370)
Q Consensus 227 ~~dg~~l~v~~~~~--l~~~~~~~~ 249 (370)
+++...+|++..+. |+.|++..+
T Consensus 271 D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 271 DESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred eCCCCCEEEEEECCCeEEEEEccCC
Confidence 56544477776554 888887543
No 156
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.77 E-value=0.047 Score=51.06 Aligned_cols=142 Identities=16% Similarity=0.070 Sum_probs=73.2
Q ss_pred eEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC-CCccceEEccCCCEEEEEeCCc-EE
Q 017520 166 VVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDYVVVCESWK-CR 242 (370)
Q Consensus 166 l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-~~p~gi~~~~dg~~l~v~~~~~-l~ 242 (370)
=++.+|| +|.|+... .....+|.+|.++++.+.+..+- ....|..++++.+.+|....++ |+
T Consensus 41 ~~ft~dG~kllF~s~~---------------dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~ 105 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDF---------------DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLR 105 (386)
T ss_dssp --B-TTS-EEEEEE-T---------------TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEE
T ss_pred CCcCCCCCEEEEEecc---------------CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEE
Confidence 3557788 45555321 24568999999999988876543 3345788889888876655555 99
Q ss_pred EEEeCCCCCCceeeeccCCCCCC--CceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEE
Q 017520 243 KYWLKGERKGKLETFAENLPGAP--DNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHL 320 (370)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~g~p--~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v 320 (370)
++++++.+ +...+. ...+.- .....++|+..++++...+. ....+.++..+++++. ..++..|
T Consensus 106 ~vdL~T~e--~~~vy~-~p~~~~g~gt~v~n~d~t~~~g~e~~~~-d~~~l~~~~~f~e~~~-----------a~p~~~i 170 (386)
T PF14583_consen 106 RVDLDTLE--ERVVYE-VPDDWKGYGTWVANSDCTKLVGIEISRE-DWKPLTKWKGFREFYE-----------ARPHCRI 170 (386)
T ss_dssp EEETTT----EEEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGG-G-----SHHHHHHHHH-----------C---EEE
T ss_pred EEECCcCc--EEEEEE-CCcccccccceeeCCCccEEEEEEEeeh-hccCccccHHHHHHHh-----------hCCCceE
Confidence 99998753 222222 111111 22345788999888765332 2233345666777666 5556678
Q ss_pred EEECC-CCcEEEEEeCCC
Q 017520 321 IHVAE-DGTIIRNLVDPT 337 (370)
Q Consensus 321 ~~~~~-~g~~~~~~~~~~ 337 (370)
+.+|. .|+....+.+..
T Consensus 171 ~~idl~tG~~~~v~~~~~ 188 (386)
T PF14583_consen 171 FTIDLKTGERKVVFEDTD 188 (386)
T ss_dssp EEEETTT--EEEEEEESS
T ss_pred EEEECCCCceeEEEecCc
Confidence 88885 466655555543
No 157
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.75 E-value=0.15 Score=50.93 Aligned_cols=143 Identities=15% Similarity=0.203 Sum_probs=86.0
Q ss_pred cCCCceeceEEcCCCcEEEEeCCCceEEEc-CCCeEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceeccc
Q 017520 115 IDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL 193 (370)
Q Consensus 115 ~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~ 193 (370)
..+..+ |..|.|+.++++.....+-.|+. -+-...++. +.|. ..-+.++.+.|.|.-|.+- +
T Consensus 450 H~GPVy-g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~-y~GH-~~PVwdV~F~P~GyYFata-s------------- 512 (707)
T KOG0263|consen 450 HSGPVY-GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVI-YKGH-LAPVWDVQFAPRGYYFATA-S------------- 512 (707)
T ss_pred CCCcee-eeeecccccceeeccCCcceeeeecccceeEEE-ecCC-CcceeeEEecCCceEEEec-C-------------
Confidence 344567 89999999988876665555555 222222211 1221 1235678899988755553 3
Q ss_pred ccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECC
Q 017520 194 EGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAP 272 (370)
Q Consensus 194 ~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~ 272 (370)
+....+||-.|-. ...+.++..+.-...+.|+|+.+.+.-..... |..||+..+ ..++.|. ..-+-...+++++
T Consensus 513 -~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G--~~VRiF~-GH~~~V~al~~Sp 587 (707)
T KOG0263|consen 513 -HDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG--NSVRIFT-GHKGPVTALAFSP 587 (707)
T ss_pred -CCceeeeeecccC-CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC--cEEEEec-CCCCceEEEEEcC
Confidence 1245577766652 45566666666677799999988444333334 888887643 3456664 3334456688899
Q ss_pred CCCEEEE
Q 017520 273 DGTFWIA 279 (370)
Q Consensus 273 ~G~lwv~ 279 (370)
+|++.++
T Consensus 588 ~Gr~LaS 594 (707)
T KOG0263|consen 588 CGRYLAS 594 (707)
T ss_pred CCceEee
Confidence 8865444
No 158
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=96.73 E-value=0.0047 Score=53.39 Aligned_cols=123 Identities=22% Similarity=0.248 Sum_probs=67.7
Q ss_pred ccccCceEecCCCcCCCcceEEcCCCcEEEEecCCeEEEEe---CCe-------EEEE-EecCCCceeceEEcCCCcEEE
Q 017520 65 TQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ---DGT-------WVNW-KFIDSQTLVGLTSTKEGHLII 133 (370)
Q Consensus 65 ~~l~~~~~~~~~~~~~P~~i~~d~~G~l~v~~~~g~I~~~~---~g~-------~~~~-~~~~~~p~~gl~~d~~G~L~v 133 (370)
+.....++|..+....=..|++|+.|.||.-+.+|.|+|.. ++. -+.+ ...-+... .+.++++|-||+
T Consensus 67 ~~~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~GvLY~ 145 (229)
T PF14517_consen 67 TWDSGSKQIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGVLYA 145 (229)
T ss_dssp -HHHH-EEEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-EEE
T ss_pred cccccCcccccCcccceeEEEecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCccEEE
Confidence 33455677877744444589999999999999999999987 221 1222 11222344 788999999999
Q ss_pred EeCCCceEEEc-CCC-----e--EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEe
Q 017520 134 CDNANGLHKVS-EDG-----V--ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD 205 (370)
Q Consensus 134 ~~~~~gi~~~~-~~g-----~--~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d 205 (370)
.+.+..+++.. +++ . ..++ .+........|...++|+||..++ +|.|||+.
T Consensus 146 i~~dg~~~~~~~p~~~~~~W~~~s~~v---~~~gw~~~~~i~~~~~g~L~~V~~------------------~G~lyr~~ 204 (229)
T PF14517_consen 146 ITPDGRLYRRYRPDGGSDRWLSGSGLV---GGGGWDSFHFIFFSPDGNLWAVKS------------------NGKLYRGR 204 (229)
T ss_dssp EETTE-EEEE---SSTT--HHHH-EEE---ESSSGGGEEEEEE-TTS-EEEE-E------------------TTEEEEES
T ss_pred EcCCCceEEeCCCCCCCCcccccccee---ccCCcccceEEeeCCCCcEEEEec------------------CCEEeccC
Confidence 98655577774 322 1 1121 122223456788889999998854 48899988
Q ss_pred CCCC
Q 017520 206 PSSN 209 (370)
Q Consensus 206 ~~t~ 209 (370)
+.+.
T Consensus 205 ~p~~ 208 (229)
T PF14517_consen 205 PPQN 208 (229)
T ss_dssp ---S
T ss_pred Cccc
Confidence 7654
No 159
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.72 E-value=0.091 Score=44.94 Aligned_cols=127 Identities=14% Similarity=0.134 Sum_probs=74.5
Q ss_pred CCCcEEEEeCCCceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcE-EEEeCCCCCCCccceecccccCCCceEEE
Q 017520 127 KEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLK 203 (370)
Q Consensus 127 ~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l-~v~d~~~~~~~~~~~~~~~~~~~~g~l~~ 203 (370)
..+.-|.+. ..+++++ ++. ...+..... ..+.+++..|+|+- .+.... ....+..
T Consensus 30 ~~~ks~~~~--~~l~~~~~~~~~~~~i~l~~~----~~I~~~~WsP~g~~favi~g~----------------~~~~v~l 87 (194)
T PF08662_consen 30 KSGKSYYGE--FELFYLNEKNIPVESIELKKE----GPIHDVAWSPNGNEFAVIYGS----------------MPAKVTL 87 (194)
T ss_pred cCcceEEee--EEEEEEecCCCccceeeccCC----CceEEEEECcCCCEEEEEEcc----------------CCcccEE
Confidence 344444433 2577776 333 333321111 24789999999964 344221 2236777
Q ss_pred EeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEE
Q 017520 204 YDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 279 (370)
Q Consensus 204 ~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~ 279 (370)
||.+...+..+. -...|.+.++|+|+.+.++..++ |..||.+.. +.+..........++.+++|++.++
T Consensus 88 yd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-----~~i~~~~~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-----KKISTFEHSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-----EEeeccccCcEEEEEEcCCCCEEEE
Confidence 887644444332 23557899999999888887543 788886532 2222112223556888999998887
Q ss_pred Eec
Q 017520 280 IIK 282 (370)
Q Consensus 280 ~~~ 282 (370)
...
T Consensus 161 a~t 163 (194)
T PF08662_consen 161 ATT 163 (194)
T ss_pred EEe
Confidence 643
No 160
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=96.71 E-value=0.041 Score=47.70 Aligned_cols=160 Identities=17% Similarity=0.126 Sum_probs=84.7
Q ss_pred ccccCceEecCCCcCCCcceEEcCCCcEEEEecCCeEEEEe---CCe------EEEEEec-CCCceeceEEcCCCcEEEE
Q 017520 65 TQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ---DGT------WVNWKFI-DSQTLVGLTSTKEGHLIIC 134 (370)
Q Consensus 65 ~~l~~~~~~~~~~~~~P~~i~~d~~G~l~v~~~~g~I~~~~---~g~------~~~~~~~-~~~p~~gl~~d~~G~L~v~ 134 (370)
+.+..+.++..| +.+=..|+..++|.||....+ .+++.. .+. -+.+... -++-. .|.+++.|.||..
T Consensus 21 n~~~~a~~iG~g-w~~~~~i~~~P~g~lY~I~~~-~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~-~i~~d~~G~LYaV 97 (229)
T PF14517_consen 21 NWSDRAITIGSG-WNNFRDIAAGPNGRLYAIRND-GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFK-FIFFDPTGVLYAV 97 (229)
T ss_dssp -HHHHSEEEESS--TT-SEEEE-TTS-EEEEETT-EEEEES---STT--HHHH-EEEE-S-GGG-S-EEEE-TTS-EEEE
T ss_pred CccchhhhcCcc-ccccceEEEcCCceEEEEECC-ceEEecCCccCcccccccCcccccCccccee-EEEecCCccEEEe
Confidence 345566777665 667788999999999988854 788883 221 2233222 12233 6899999999998
Q ss_pred eCCCceEEEc-C-CC-eEEE---EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEE-eCC
Q 017520 135 DNANGLHKVS-E-DG-VENF---LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY-DPS 207 (370)
Q Consensus 135 ~~~~gi~~~~-~-~g-~~~~---~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~ 207 (370)
+....+++.. + ++ .... .....+..-+....|-.+++|.||.-+. ++++++. .|+
T Consensus 98 ~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~------------------dg~~~~~~~p~ 159 (229)
T PF14517_consen 98 TPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITP------------------DGRLYRRYRPD 159 (229)
T ss_dssp ETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEET------------------TE-EEEE---S
T ss_pred ccccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcC------------------CCceEEeCCCC
Confidence 8766788887 2 33 1111 1111112223456688899999999864 3578877 343
Q ss_pred CCeE-------EEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEe
Q 017520 208 SNIT-------TLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWL 246 (370)
Q Consensus 208 t~~~-------~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~ 246 (370)
...- .+...+...+.-|.+++++. ||....++ |+|+..
T Consensus 160 ~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~~~G~lyr~~~ 205 (229)
T PF14517_consen 160 GGSDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAVKSNGKLYRGRP 205 (229)
T ss_dssp STT--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE-ETTEEEEES-
T ss_pred CCCCccccccceeccCCcccceEEeeCCCCc-EEEEecCCEEeccCC
Confidence 2211 11112333456788889988 67767766 888754
No 161
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.67 E-value=0.31 Score=42.18 Aligned_cols=172 Identities=12% Similarity=0.096 Sum_probs=96.7
Q ss_pred cceEEcCCCcEEEEe-cCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEe-CCCceEEEc-CCC--eEEEEe
Q 017520 82 EDASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICD-NANGLHKVS-EDG--VENFLS 153 (370)
Q Consensus 82 ~~i~~d~~G~l~v~~-~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~-~~~gi~~~~-~~g--~~~~~~ 153 (370)
..+-+.-+|+--++. .+..|.-|+ .|. +++|...+...+ ..+...|..=+.+. .+..++.+| .+| .+.+..
T Consensus 21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVl-D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg 99 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVL-DAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRG 99 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceee-eccccccccccccCCCCceEEEEEcccCeeeeeccc
Confidence 445556678655554 455566666 555 566666666666 77776666544433 334577777 777 444322
Q ss_pred ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE---ecCCCCccceEEccCC
Q 017520 154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV---ADGFYFANGVALSRDE 230 (370)
Q Consensus 154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~---~~~~~~p~gi~~~~dg 230 (370)
. ...+|.+.+..+..+.++-+ .+..+..||=.+...+++ .+....... ++-.+
T Consensus 100 H-----~aqVNtV~fNeesSVv~Sgs-----------------fD~s~r~wDCRS~s~ePiQildea~D~V~S--i~v~~ 155 (307)
T KOG0316|consen 100 H-----LAQVNTVRFNEESSVVASGS-----------------FDSSVRLWDCRSRSFEPIQILDEAKDGVSS--IDVAE 155 (307)
T ss_pred c-----cceeeEEEecCcceEEEecc-----------------ccceeEEEEcccCCCCccchhhhhcCceeE--EEecc
Confidence 1 24688999988888877744 234566777554444332 111112222 33334
Q ss_pred CEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecC
Q 017520 231 DYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKL 283 (370)
Q Consensus 231 ~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~ 283 (370)
..++.....+ +.+||+..+ +.. .+.......-+.+++||+ ..++...+
T Consensus 156 heIvaGS~DGtvRtydiR~G---~l~--sDy~g~pit~vs~s~d~nc~La~~l~s 205 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKG---TLS--SDYFGHPITSVSFSKDGNCSLASSLDS 205 (307)
T ss_pred cEEEeeccCCcEEEEEeecc---eee--hhhcCCcceeEEecCCCCEEEEeeccc
Confidence 4355555555 999998543 221 122222245588999998 44555544
No 162
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.67 E-value=0.13 Score=47.87 Aligned_cols=147 Identities=12% Similarity=0.064 Sum_probs=89.9
Q ss_pred ecCCCceeceEEcCCCcEEEEeCC---CceEEEcCCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccce
Q 017520 114 FIDSQTLVGLTSTKEGHLIICDNA---NGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC 189 (370)
Q Consensus 114 ~~~~~p~~gl~~d~~G~L~v~~~~---~gi~~~~~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~ 189 (370)
...+... =+.|+++|+-..+... ..|+.+..++ ++.... ..|. ...+..+.++||.+-.++.+
T Consensus 222 ~htdEVW-fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~t-lvgh-~~~V~yi~wSPDdryLlaCg---------- 288 (519)
T KOG0293|consen 222 DHTDEVW-FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKT-LVGH-SQPVSYIMWSPDDRYLLACG---------- 288 (519)
T ss_pred hCCCcEE-EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeee-eecc-cCceEEEEECCCCCeEEecC----------
Confidence 3455566 6778877775554332 1455555555 433222 1222 13456788999988777754
Q ss_pred ecccccCCCceEEEEeCCCCeEEEEecCC--CCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCC
Q 017520 190 LDILEGKPHGQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPD 266 (370)
Q Consensus 190 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~--~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~ 266 (370)
....+..+|.+++......... ..+...++.|||..++.....+ +..++++|...+..+..- .| ...
T Consensus 289 -------~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr--~~-~v~ 358 (519)
T KOG0293|consen 289 -------FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR--DP-KVH 358 (519)
T ss_pred -------chHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc--cc-eeE
Confidence 2345888999888765544322 4456789999999777777777 999999987544433221 11 245
Q ss_pred ceeECCCCC-EEEEEecC
Q 017520 267 NINLAPDGT-FWIAIIKL 283 (370)
Q Consensus 267 ~i~~d~~G~-lwv~~~~~ 283 (370)
.+++..||. +++.+...
T Consensus 359 dlait~Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVTVDK 376 (519)
T ss_pred EEEEcCCCcEEEEEeccc
Confidence 688888996 44444443
No 163
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.66 E-value=0.88 Score=45.87 Aligned_cols=220 Identities=13% Similarity=0.087 Sum_probs=112.6
Q ss_pred cEEEEecCCeEEEEeCCeEEEEEecC---CCceeceEEcCCCcE--EEEe-------CCCceEEEcCCC-eEEEEeecCC
Q 017520 91 VIYTATRDGWIKRLQDGTWVNWKFID---SQTLVGLTSTKEGHL--IICD-------NANGLHKVSEDG-VENFLSYVNG 157 (370)
Q Consensus 91 ~l~v~~~~g~I~~~~~g~~~~~~~~~---~~p~~gl~~d~~G~L--~v~~-------~~~gi~~~~~~g-~~~~~~~~~g 157 (370)
.+|+-. +|.+.+++.+..+...... ..+. ..++++||+. |+.. ....|+.++..+ .+.+. .+
T Consensus 322 ~~~~v~-~G~l~~~~~~~~~pv~g~~g~~~~vs-spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt---~g 396 (591)
T PRK13616 322 GLHALV-DGSLVSVDGQGVTPVPGAFGQMGNIT-SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL---EG 396 (591)
T ss_pred cceEEE-CCeEEEecCCCeeeCCCccccccCcc-cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee---cC
Confidence 466444 7788887744433332221 2344 6778888863 4431 112455555333 33332 22
Q ss_pred cccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEE
Q 017520 158 SKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC 236 (370)
Q Consensus 158 ~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~ 236 (370)
.. ...-.+++|| .||+...... ..-+......+.++.++.+++.... .--..+..+.+++||..+.+.
T Consensus 397 ~~---~t~PsWspDG~~lw~v~dg~~------~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i 465 (591)
T PRK13616 397 HS---LTRPSWSLDADAVWVVVDGNT------VVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMI 465 (591)
T ss_pred CC---CCCceECCCCCceEEEecCcc------eEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEE
Confidence 22 2334888995 6888843211 0001112244677777666554432 112347789999999988887
Q ss_pred eCCcEEE---EEeCCCC--CCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCcccccc
Q 017520 237 ESWKCRK---YWLKGER--KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 311 (370)
Q Consensus 237 ~~~~l~~---~~~~~~~--~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (370)
..+.|+. ....++. ......+...+...+..+..-.++.|.++...+.
T Consensus 466 ~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~--------------------------- 518 (591)
T PRK13616 466 IGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPE--------------------------- 518 (591)
T ss_pred ECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCC---------------------------
Confidence 7555544 2222221 1111112222222235566677788887755431
Q ss_pred ccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCC
Q 017520 312 ITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 361 (370)
Q Consensus 312 ~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~ 361 (370)
..+..++.+|.....+ +.+.....+..+....+.||+.+-++
T Consensus 519 ------~~v~~v~vDG~~~~~~--~~~n~~~~v~~vaa~~~~iyv~~~~g 560 (591)
T PRK13616 519 ------HPVWYVNLDGSNSDAL--PSRNLSAPVVAVAASPSTVYVTDARA 560 (591)
T ss_pred ------CceEEEecCCcccccc--CCCCccCceEEEecCCceEEEEcCCc
Confidence 2356677777665533 23333344444544456788775554
No 164
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.66 E-value=0.26 Score=42.09 Aligned_cols=127 Identities=16% Similarity=0.157 Sum_probs=76.3
Q ss_pred cCCCcEEEEecCCeEEEEe--CCeEEEEEe-cCCCceeceEEcCCCc-EEEEeC--CCceEEEcCCC--eEEEEeecCCc
Q 017520 87 DKNGVIYTATRDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEGH-LIICDN--ANGLHKVSEDG--VENFLSYVNGS 158 (370)
Q Consensus 87 d~~G~l~v~~~~g~I~~~~--~g~~~~~~~-~~~~p~~gl~~d~~G~-L~v~~~--~~gi~~~~~~g--~~~~~~~~~g~ 158 (370)
|..+.-|.+. -.|++++ +.....+.. ..+... .++..|+|+ +.+... ...+..++..+ +..+ .
T Consensus 29 ~~~~ks~~~~--~~l~~~~~~~~~~~~i~l~~~~~I~-~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~----~-- 99 (194)
T PF08662_consen 29 DKSGKSYYGE--FELFYLNEKNIPVESIELKKEGPIH-DVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF----G-- 99 (194)
T ss_pred ccCcceEEee--EEEEEEecCCCccceeeccCCCceE-EEEECcCCCEEEEEEccCCcccEEEcCcccEeEee----c--
Confidence 3456666654 3588887 333444322 223456 899999996 444432 23466666434 2222 1
Q ss_pred ccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC
Q 017520 159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 238 (370)
Q Consensus 159 ~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~ 238 (370)
....|.+.++|+|++.+.... ....|.|..||.++.+... .........++++|||+++..+.+
T Consensus 100 -~~~~n~i~wsP~G~~l~~~g~--------------~n~~G~l~~wd~~~~~~i~-~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 100 -TQPRNTISWSPDGRFLVLAGF--------------GNLNGDLEFWDVRKKKKIS-TFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred -CCCceEEEECCCCCEEEEEEc--------------cCCCcEEEEEECCCCEEee-ccccCcEEEEEEcCCCCEEEEEEe
Confidence 135678999999986666431 0134678889987444322 223345678999999998877765
No 165
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=96.62 E-value=0.44 Score=41.96 Aligned_cols=181 Identities=9% Similarity=0.033 Sum_probs=107.6
Q ss_pred ceEEcCCCcEEEEe-cCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEE-eCCCceEEEc-CCC-eEEEEeec
Q 017520 83 DASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG-VENFLSYV 155 (370)
Q Consensus 83 ~i~~d~~G~l~v~~-~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~-~~~~gi~~~~-~~g-~~~~~~~~ 155 (370)
.|-+..+|.|.++. .+.....|- +|+ +-++....+..+ ++.+|.+-...+. ..++-+..+| ++| ......
T Consensus 15 qiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW-~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-- 91 (327)
T KOG0643|consen 15 QIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVW-CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-- 91 (327)
T ss_pred eEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEE-EEEecCCcceeeeccccceeEEEEcCCCcEEEEee--
Confidence 35566788888776 444444443 664 566766777788 8888877765554 4445566666 788 221111
Q ss_pred CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCC-------CCe-EEEEecCCCCccceEEc
Q 017520 156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-------SNI-TTLVADGFYFANGVALS 227 (370)
Q Consensus 156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-------t~~-~~~~~~~~~~p~gi~~~ 227 (370)
.+ ..+..+.++.+|++.+...... ....+.|..+|.. +++ ..++...-..++...|+
T Consensus 92 ~~---~~Vk~~~F~~~gn~~l~~tD~~------------mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 92 TN---SPVKRVDFSFGGNLILASTDKQ------------MGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred cC---CeeEEEeeccCCcEEEEEehhh------------cCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 11 2456788899997544422100 0112344455432 122 23333344567778899
Q ss_pred cCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520 228 RDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 228 ~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~ 283 (370)
+-++.++.+...+ |.+||...+.. ..+. .+......++|.+.+|..++|+....
T Consensus 157 ~l~~~ii~Ghe~G~is~~da~~g~~-~v~s-~~~h~~~Ind~q~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 157 PLGETIIAGHEDGSISIYDARTGKE-LVDS-DEEHSSKINDLQFSRDRTYFITGSKD 211 (327)
T ss_pred ccCCEEEEecCCCcEEEEEcccCce-eeec-hhhhccccccccccCCcceEEecccC
Confidence 9999888877777 99999865311 1111 11222357889999999999997553
No 166
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.58 E-value=0.16 Score=49.37 Aligned_cols=123 Identities=14% Similarity=0.245 Sum_probs=75.2
Q ss_pred cccccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCC-------eEEEEec--------C----
Q 017520 158 SKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-------ITTLVAD--------G---- 217 (370)
Q Consensus 158 ~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~-------~~~~~~~--------~---- 217 (370)
.++..+..+++.+. |++|++..+..-..+ -...-......|.|+||-+.++ +++.+.. .
T Consensus 414 T~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~-~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~ 492 (616)
T COG3211 414 TPMDRPEWIAVNPGTGEVYFTLTNNGKRSD-DAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASA 492 (616)
T ss_pred ccccCccceeecCCcceEEEEeCCCCcccc-ccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccccc
Confidence 35567888999874 689999764211100 0001112234578999987655 4444421 1
Q ss_pred ------CCCccceEEccCCCEEEEEeCCc----------EEEEEeCCCCCCceeeeccCCC-CCCCceeECCCC-CEEEE
Q 017520 218 ------FYFANGVALSRDEDYVVVCESWK----------CRKYWLKGERKGKLETFAENLP-GAPDNINLAPDG-TFWIA 279 (370)
Q Consensus 218 ------~~~p~gi~~~~dg~~l~v~~~~~----------l~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d~~G-~lwv~ 279 (370)
+..|.++++++.|+ ||+++.+. +......+++.++.+.|..... ....|.++.+|| .++|+
T Consensus 493 ~~~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 493 NINANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred CcccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence 34589999999999 77766432 3434445566777777753211 245678999999 59998
Q ss_pred Eec
Q 017520 280 IIK 282 (370)
Q Consensus 280 ~~~ 282 (370)
...
T Consensus 572 vQH 574 (616)
T COG3211 572 VQH 574 (616)
T ss_pred ecC
Confidence 754
No 167
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.53 E-value=0.3 Score=44.97 Aligned_cols=108 Identities=16% Similarity=0.207 Sum_probs=62.0
Q ss_pred CcEEEEeCC-----CceEEEc-CCC-eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCce
Q 017520 129 GHLIICDNA-----NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQ 200 (370)
Q Consensus 129 G~L~v~~~~-----~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 200 (370)
.++||.|.. .+++.+| .++ +.-..+ . .+.-.+++++|| .+|+++.- ......+..+..
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~--~----g~~~~~~~spdgk~~y~a~T~--------~sR~~rG~RtDv 68 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMID--T----GFLGNVALSPDGKTIYVAETF--------YSRGTRGERTDV 68 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEE--E----ESSEEEEE-TTSSEEEEEEEE--------EEETTEEEEEEE
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEee--c----ccCCceeECCCCCEEEEEEEE--------EeccccccceeE
Confidence 357777642 2577777 445 221111 1 133347888998 47877542 112222333456
Q ss_pred EEEEeCCCCeEE--EEecC------CCCccceEEccCCCEEEEEeCCc---EEEEEeCCCC
Q 017520 201 LLKYDPSSNITT--LVADG------FYFANGVALSRDEDYVVVCESWK---CRKYWLKGER 250 (370)
Q Consensus 201 l~~~d~~t~~~~--~~~~~------~~~p~gi~~~~dg~~l~v~~~~~---l~~~~~~~~~ 250 (370)
|-.||++|-..+ +.... ...++-.+++.||+++||.+..- |.++|+...+
T Consensus 69 v~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k 129 (342)
T PF06433_consen 69 VEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKK 129 (342)
T ss_dssp EEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE
T ss_pred EEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCc
Confidence 888998765432 23222 34567889999999999998764 9999987653
No 168
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.49 E-value=0.47 Score=44.49 Aligned_cols=139 Identities=12% Similarity=0.115 Sum_probs=80.1
Q ss_pred ceEEcCCCcEEEEeCCCceEEEc--CCCeEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCc
Q 017520 122 GLTSTKEGHLIICDNANGLHKVS--EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG 199 (370)
Q Consensus 122 gl~~d~~G~L~v~~~~~gi~~~~--~~g~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g 199 (370)
+.+|.|||.|+.+....|++++. +.+ ... ..++|. -.-+..+.|..+|.-.++.. .++
T Consensus 352 s~~fHpDgLifgtgt~d~~vkiwdlks~-~~~-a~Fpgh-t~~vk~i~FsENGY~Lat~a-----------------dd~ 411 (506)
T KOG0289|consen 352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQ-TNV-AKFPGH-TGPVKAISFSENGYWLATAA-----------------DDG 411 (506)
T ss_pred EeeEcCCceEEeccCCCceEEEEEcCCc-ccc-ccCCCC-CCceeEEEeccCceEEEEEe-----------------cCC
Confidence 78999999999987777888876 333 111 122332 23567889998887555532 345
Q ss_pred eEEEEeCCCC-eEEE-EecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCE
Q 017520 200 QLLKYDPSSN-ITTL-VADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF 276 (370)
Q Consensus 200 ~l~~~d~~t~-~~~~-~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l 276 (370)
.|..||...- .+.. ........+.+.||..|..|..+...- |+.+.-....-.....+. ...|..+++.+.....+
T Consensus 412 ~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~-~~sg~st~v~Fg~~aq~ 490 (506)
T KOG0289|consen 412 SVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA-DHSGLSTGVRFGEHAQY 490 (506)
T ss_pred eEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh-hcccccceeeecccceE
Confidence 5888887421 2222 223444678899999998766663221 555543222222223332 23356777888765544
Q ss_pred EEEEe
Q 017520 277 WIAII 281 (370)
Q Consensus 277 wv~~~ 281 (370)
...+.
T Consensus 491 l~s~s 495 (506)
T KOG0289|consen 491 LASTS 495 (506)
T ss_pred Eeecc
Confidence 44433
No 169
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.42 E-value=0.25 Score=46.57 Aligned_cols=202 Identities=15% Similarity=0.121 Sum_probs=109.9
Q ss_pred ceeceEEcCCCcEEEEe-CCCceEEEc-CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccc
Q 017520 119 TLVGLTSTKEGHLIICD-NANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE 194 (370)
Q Consensus 119 p~~gl~~d~~G~L~v~~-~~~gi~~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~ 194 (370)
.. +++.++.|.+.++. ..+.||.+. .+| +..+.. ....+..|.+..||..+|+.+
T Consensus 84 v~-al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a-----HYQ~ITcL~fs~dgs~iiTgs--------------- 142 (476)
T KOG0646|consen 84 VH-ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSA-----HYQSITCLKFSDDGSHIITGS--------------- 142 (476)
T ss_pred ee-eeecCCCceEEEeecccCcEEEEEeccccHHHHHHh-----hccceeEEEEeCCCcEEEecC---------------
Confidence 45 88999999988876 345688777 778 332211 123567788999999989865
Q ss_pred cCCCceEEEEeCC-------CCe---EEEEecCCCCccceEEccC--CCEEEEEeCCc-EEEEEeCCCCCCceeeeccCC
Q 017520 195 GKPHGQLLKYDPS-------SNI---TTLVADGFYFANGVALSRD--EDYVVVCESWK-CRKYWLKGERKGKLETFAENL 261 (370)
Q Consensus 195 ~~~~g~l~~~d~~-------t~~---~~~~~~~~~~p~gi~~~~d--g~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~ 261 (370)
.+|.|+.|..- +.. ...+.+.......+.+++- ...+|-+..++ +..|++..... ...+ ..
T Consensus 143 --kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L--Llti--~f 216 (476)
T KOG0646|consen 143 --KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL--LLTI--TF 216 (476)
T ss_pred --CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee--eEEE--ec
Confidence 34666665421 111 1111111111122223222 12377777777 88899876532 1111 23
Q ss_pred CCCCCceeECCCC-CEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCc
Q 017520 262 PGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQL 340 (370)
Q Consensus 262 ~g~p~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~ 340 (370)
|.-+..+++|+.+ .+|+|+..+..-...+ .++|..-. .-..-.++.++..+..+....+.
T Consensus 217 p~si~av~lDpae~~~yiGt~~G~I~~~~~-----------~~~~~~~~-------~v~~k~~~~~~t~~~~~~Gh~~~- 277 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEGKIFQNLL-----------FKLSGQSA-------GVNQKGRHEENTQINVLVGHENE- 277 (476)
T ss_pred CCcceeEEEcccccEEEecCCcceEEeeeh-----------hcCCcccc-------cccccccccccceeeeeccccCC-
Confidence 4446778899877 5899987764211111 11111100 01123334566666666554432
Q ss_pred cccceeEE-EECCEEEEEeCCCCeEEEE
Q 017520 341 MSFVTSGL-QVDNHLYVISLTSNFIGKV 367 (370)
Q Consensus 341 ~~~~t~~~-~~~g~L~~gs~~~~~i~~~ 367 (370)
..+|.+. ..||+|.+.+....-+.+-
T Consensus 278 -~~ITcLais~DgtlLlSGd~dg~VcvW 304 (476)
T KOG0646|consen 278 -SAITCLAISTDGTLLLSGDEDGKVCVW 304 (476)
T ss_pred -cceeEEEEecCccEEEeeCCCCCEEEE
Confidence 3455554 4588888777766655543
No 170
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.39 E-value=0.033 Score=53.92 Aligned_cols=74 Identities=16% Similarity=0.108 Sum_probs=45.4
Q ss_pred ccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC--CCccceEEccCCCEEEEE
Q 017520 159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVVC 236 (370)
Q Consensus 159 ~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~--~~p~gi~~~~dg~~l~v~ 236 (370)
-|.+|..|++|+.|+|||.+..+.-...+... +-..+..=++.++++..+...- ....|.+++||++.+||.
T Consensus 498 ~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~------G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~ 571 (616)
T COG3211 498 WFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFR------GVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN 571 (616)
T ss_pred cccCCCceEECCCCCEEEEecCCCCccCcccc------cccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence 36789999999999999986531110000000 0112333345566666555432 356789999999988887
Q ss_pred eC
Q 017520 237 ES 238 (370)
Q Consensus 237 ~~ 238 (370)
-.
T Consensus 572 vQ 573 (616)
T COG3211 572 VQ 573 (616)
T ss_pred ec
Confidence 64
No 171
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=96.26 E-value=0.33 Score=42.64 Aligned_cols=176 Identities=13% Similarity=0.057 Sum_probs=102.1
Q ss_pred ceeceEEcCCCcEEEEeCCCc-eEEEc--CCC-eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceeccc
Q 017520 119 TLVGLTSTKEGHLIICDNANG-LHKVS--EDG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDIL 193 (370)
Q Consensus 119 p~~gl~~d~~G~L~v~~~~~g-i~~~~--~~g-~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~ 193 (370)
.. .+++..+|.=.+.....+ +..++ +.. .+... ..| ...++.+++.++.. .++++.++
T Consensus 23 v~-Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~--~~g-h~~svdql~w~~~~~d~~atas~------------- 85 (313)
T KOG1407|consen 23 VH-SVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELV--YRG-HTDSVDQLCWDPKHPDLFATASG------------- 85 (313)
T ss_pred ce-EEEEcccCceeeecccCCceEEEEecchhhhhhhc--ccC-CCcchhhheeCCCCCcceEEecC-------------
Confidence 44 677777776555433332 22222 222 11111 111 12367889998754 67777553
Q ss_pred ccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECC
Q 017520 194 EGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAP 272 (370)
Q Consensus 194 ~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~ 272 (370)
...+.++|..+++.......-....-+.++|+|+.+.+.+... |.-+|....+....+.+. -.-+.++...
T Consensus 86 ----dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~----~e~ne~~w~~ 157 (313)
T KOG1407|consen 86 ----DKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK----FEVNEISWNN 157 (313)
T ss_pred ----CceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc----ceeeeeeecC
Confidence 3567888877666655444445566789999999888888877 877876544332222221 1245677777
Q ss_pred CCCEEEEEec-CchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEE
Q 017520 273 DGTFWIAIIK-LDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIR 331 (370)
Q Consensus 273 ~G~lwv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~ 331 (370)
++++++.+.+ |..++ ..||.++.+.. +.+++..=.-++|+|+|+.+.
T Consensus 158 ~nd~Fflt~GlG~v~I----LsypsLkpv~s--------i~AH~snCicI~f~p~GryfA 205 (313)
T KOG1407|consen 158 SNDLFFLTNGLGCVEI----LSYPSLKPVQS--------IKAHPSNCICIEFDPDGRYFA 205 (313)
T ss_pred CCCEEEEecCCceEEE----Eeccccccccc--------cccCCcceEEEEECCCCceEe
Confidence 7788887766 43332 23444443321 223444445688899998876
No 172
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=96.26 E-value=1.1 Score=42.52 Aligned_cols=213 Identities=14% Similarity=0.114 Sum_probs=103.9
Q ss_pred EEEEecCCeEEEEe--CCeEEEEEecCCCc-eeceEEcCCCcEEEEeCCC--ceEEEcCCC-eEEEEeecCCcccccccc
Q 017520 92 IYTATRDGWIKRLQ--DGTWVNWKFIDSQT-LVGLTSTKEGHLIICDNAN--GLHKVSEDG-VENFLSYVNGSKLRFAND 165 (370)
Q Consensus 92 l~v~~~~g~I~~~~--~g~~~~~~~~~~~p-~~gl~~d~~G~L~v~~~~~--gi~~~~~~g-~~~~~~~~~g~~~~~~~~ 165 (370)
|..++.+|.+..|| .|+++....-...| . .+-.-.+..+-.++..+ .+++++.++ ...+.. ..+.++.
T Consensus 291 ilS~~vD~ttilwd~~~g~~~q~f~~~s~~~l-DVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G-----H~g~V~a 364 (524)
T KOG0273|consen 291 ILSGGVDGTTILWDAHTGTVKQQFEFHSAPAL-DVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG-----HHGEVNA 364 (524)
T ss_pred EEeccCCccEEEEeccCceEEEeeeeccCCcc-ceEEecCceEeecCCCceEEEEEecCCCcceeeec-----ccCceEE
Confidence 33344555566666 45544332222222 2 22222222333333332 255555555 554432 2357889
Q ss_pred eEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCC-CeEEEEe-------cCCCCccc-eEEcc-CCCEEEE
Q 017520 166 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLVA-------DGFYFANG-VALSR-DEDYVVV 235 (370)
Q Consensus 166 l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-~~~~~~~-------~~~~~p~g-i~~~~-dg~~l~v 235 (370)
|-+++.|.|..+.+. ++++-.++... +.+.-+. +-...|.| +...+ ++..+..
T Consensus 365 lk~n~tg~LLaS~Sd-----------------D~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~s 427 (524)
T KOG0273|consen 365 LKWNPTGSLLASCSD-----------------DGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLAS 427 (524)
T ss_pred EEECCCCceEEEecC-----------------CCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEE
Confidence 999999999888653 23343333211 1111110 00111222 22222 3444555
Q ss_pred EeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccC
Q 017520 236 CESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 314 (370)
Q Consensus 236 ~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (370)
+...+ |..||+..+. -...|... ......+++.++|.+...-.-.
T Consensus 428 as~dstV~lwdv~~gv--~i~~f~kH-~~pVysvafS~~g~ylAsGs~d------------------------------- 473 (524)
T KOG0273|consen 428 ASFDSTVKLWDVESGV--PIHTLMKH-QEPVYSVAFSPNGRYLASGSLD------------------------------- 473 (524)
T ss_pred eecCCeEEEEEccCCc--eeEeeccC-CCceEEEEecCCCcEEEecCCC-------------------------------
Confidence 56556 8888876542 12233321 1113457889999655442221
Q ss_pred CCceEEEEEC-CCCcEEEEEeCCCCCccccceeEEEE-CCEEEEEeCCCCeEEEEeC
Q 017520 315 GGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 369 (370)
Q Consensus 315 ~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~~~~~i~~~~~ 369 (370)
++|.-.+ +.|++.++|.+..+ +..+... +|+...+......+.++++
T Consensus 474 ---g~V~iws~~~~~l~~s~~~~~~-----Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 474 ---GCVHIWSTKTGKLVKSYQGTGG-----IFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ---CeeEeccccchheeEeecCCCe-----EEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 3455555 56899999987554 3344432 3566666666666655553
No 173
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.20 E-value=0.99 Score=42.90 Aligned_cols=223 Identities=10% Similarity=0.067 Sum_probs=115.5
Q ss_pred CcceEEcCCCcEEE-EecCCeEEEEe-CCe--EEEEEecCCCceeceEEcCCC-cEEEEeCCCceEEEc-CCCeEEEEee
Q 017520 81 PEDASMDKNGVIYT-ATRDGWIKRLQ-DGT--WVNWKFIDSQTLVGLTSTKEG-HLIICDNANGLHKVS-EDGVENFLSY 154 (370)
Q Consensus 81 P~~i~~d~~G~l~v-~~~~g~I~~~~-~g~--~~~~~~~~~~p~~gl~~d~~G-~L~v~~~~~gi~~~~-~~g~~~~~~~ 154 (370)
..++.+-+||.|.. |+..|.|..|+ +-+ +..+.......+ -..|.+.+ .+++...+.++.+++ .++..+...
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~-~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~- 148 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVH-VTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE- 148 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCcee-EEEecccCCeEEEecCCCceEEEEEcCCcEEEEE-
Confidence 34455556676663 44566666666 211 112222222234 56676655 566665567788877 444111111
Q ss_pred cCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-cceEEccCCCE
Q 017520 155 VNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDY 232 (370)
Q Consensus 155 ~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-~gi~~~~dg~~ 232 (370)
..+.. ..+...++.| .+++.++-+ -+|.|-.||..+.....+.-+...| ..+.+-|.|.
T Consensus 149 l~~ht-DYVR~g~~~~~~~hivvtGs-----------------YDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs- 209 (487)
T KOG0310|consen 149 LSGHT-DYVRCGDISPANDHIVVTGS-----------------YDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS- 209 (487)
T ss_pred ecCCc-ceeEeeccccCCCeEEEecC-----------------CCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC-
Confidence 12211 2566667765 457888854 3467778887654222222122223 3455556666
Q ss_pred EEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhCCccccc
Q 017520 233 VVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 310 (370)
Q Consensus 233 l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (370)
++++-.++ +.+||+.++..-....+ +..--..-+++.++++ ++-+...+
T Consensus 210 ~iasAgGn~vkVWDl~~G~qll~~~~--~H~KtVTcL~l~s~~~rLlS~sLD~--------------------------- 260 (487)
T KOG0310|consen 210 LIASAGGNSVKVWDLTTGGQLLTSMF--NHNKTVTCLRLASDSTRLLSGSLDR--------------------------- 260 (487)
T ss_pred EEEEcCCCeEEEEEecCCceehhhhh--cccceEEEEEeecCCceEeeccccc---------------------------
Confidence 66666666 88899873311111111 1111133466666664 55555544
Q ss_pred cccCCCceEEEEEC-CCCcEEEEEeCCCCCccccceeEEEE-CCEEEEEeCCCCeEE
Q 017520 311 FITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIG 365 (370)
Q Consensus 311 ~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~~~~~i~ 365 (370)
.+-.|| .+-+++.++.-+.+. .+..+.. +.++++|--++--..
T Consensus 261 --------~VKVfd~t~~Kvv~s~~~~~pv----Lsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 261 --------HVKVFDTTNYKVVHSWKYPGPV----LSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred --------ceEEEEccceEEEEeeecccce----eeEEecCCCceEEEecccceeee
Confidence 366677 567888887766542 3344444 356888866655433
No 174
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.18 E-value=1.1 Score=43.36 Aligned_cols=107 Identities=20% Similarity=0.143 Sum_probs=63.3
Q ss_pred ceEEcCCCc-EEEEeCCC---ceEEEcCCC--eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccc
Q 017520 122 GLTSTKEGH-LIICDNAN---GLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILE 194 (370)
Q Consensus 122 gl~~d~~G~-L~v~~~~~---gi~~~~~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~ 194 (370)
...+.+||+ |.++.... .|+.+|-++ ...+... .+.. ..| .+.|||+ |+|+...
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~-~gi~-~~P---s~spdG~~ivf~Sdr-------------- 302 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG-FGIN-TSP---SWSPDGSKIVFTSDR-------------- 302 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccC-Cccc-cCc---cCCCCCCEEEEEeCC--------------
Confidence 466778886 33333222 477777333 3333221 2211 122 5668894 6655331
Q ss_pred cCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCC--c--EEEEEeCC
Q 017520 195 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--K--CRKYWLKG 248 (370)
Q Consensus 195 ~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~--~--l~~~~~~~ 248 (370)
.+.-.|+++|.++++.+.+.........-.+++||+.+.+.... . |..+++..
T Consensus 303 -~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 303 -GGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred -CCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 13347999999988877666555555566789999977777732 2 77777644
No 175
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.11 E-value=0.19 Score=50.38 Aligned_cols=150 Identities=12% Similarity=0.140 Sum_probs=92.1
Q ss_pred CcceEEcC--CCcEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEE--E
Q 017520 81 PEDASMDK--NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VEN--F 151 (370)
Q Consensus 81 P~~i~~d~--~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~--~ 151 (370)
..||++.| |.+..-|+-||+|..|+ +.++..|.+...... ++++.|||..-|.....|..++- ..| +.. .
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 46688876 44555667899999999 777888877666677 99999999754444455665554 334 221 1
Q ss_pred EeecCC--cccccccceEEcCCC--cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc---cce
Q 017520 152 LSYVNG--SKLRFANDVVEASDG--SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA---NGV 224 (370)
Q Consensus 152 ~~~~~g--~~~~~~~~l~~d~~G--~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p---~gi 224 (370)
+....+ ....-+.++-+.+.. ++.||.. +.+|..||..+..+...+.+.... .--
T Consensus 491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn------------------DSrIRI~d~~~~~lv~KfKG~~n~~SQ~~A 552 (712)
T KOG0283|consen 491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSN------------------DSRIRIYDGRDKDLVHKFKGFRNTSSQISA 552 (712)
T ss_pred EeeccCccccCceeeeeEecCCCCCeEEEecC------------------CCceEEEeccchhhhhhhcccccCCcceee
Confidence 111111 111235566555422 5777743 457888887544443334444433 335
Q ss_pred EEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520 225 ALSRDEDYVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 225 ~~~~dg~~l~v~~~~~-l~~~~~~~~ 249 (370)
.++.||+.++.+..+. |+.|+.+..
T Consensus 553 sfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 553 SFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred eEccCCCEEEEeecCceEEEEeCCCC
Confidence 6888999888887666 777776443
No 176
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=96.10 E-value=0.022 Score=35.18 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=30.3
Q ss_pred EecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCC
Q 017520 214 VADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGE 249 (370)
Q Consensus 214 ~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~ 249 (370)
+..++..|+|+++++.++.+||++... |.+++++|.
T Consensus 4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 345678899999999999999999987 888887663
No 177
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.03 E-value=1.1 Score=40.52 Aligned_cols=150 Identities=11% Similarity=0.117 Sum_probs=81.6
Q ss_pred CCcceEEcCCCcEEEE-ecCCeEEEEe--CCe-----EEEEEecCCCceeceEEcCCCcEE-EEeC-CCceEE--Ec--C
Q 017520 80 HPEDASMDKNGVIYTA-TRDGWIKRLQ--DGT-----WVNWKFIDSQTLVGLTSTKEGHLI-ICDN-ANGLHK--VS--E 145 (370)
Q Consensus 80 ~P~~i~~d~~G~l~v~-~~~g~I~~~~--~g~-----~~~~~~~~~~p~~gl~~d~~G~L~-v~~~-~~gi~~--~~--~ 145 (370)
.-.++++.+||.-+++ ..|+.|..|+ +-. .....-..+.|. .++|.+|-.-+ |.-. +..++. .+ +
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~~K~~ 166 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKLVKKT 166 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence 4678999999965544 3777777777 211 111122334677 88998887533 3222 233443 33 3
Q ss_pred CC-eEEEEeecCCccc---ccccceEEc-CCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCC
Q 017520 146 DG-VENFLSYVNGSKL---RFANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 220 (370)
Q Consensus 146 ~g-~~~~~~~~~g~~~---~~~~~l~~d-~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~ 220 (370)
+| ...-........+ +.+.-+.+. .++..|+...+ ....|..|+.++.....+.++...
T Consensus 167 dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas----------------~dt~i~lw~lkGq~L~~idtnq~~ 230 (420)
T KOG2096|consen 167 DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSAS----------------LDTKICLWDLKGQLLQSIDTNQSS 230 (420)
T ss_pred cCCCCcccccccccccchhcccceEEEeecCCceEEEEec----------------CCCcEEEEecCCceeeeecccccc
Confidence 44 2111111111111 122222232 34455665443 334688888885545555555555
Q ss_pred ccceEEccCCCEEEEEeCCc-EEEEEe
Q 017520 221 ANGVALSRDEDYVVVCESWK-CRKYWL 246 (370)
Q Consensus 221 p~gi~~~~dg~~l~v~~~~~-l~~~~~ 246 (370)
..-.+++|+|+++.++...- |.+|.+
T Consensus 231 n~~aavSP~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 231 NYDAAVSPDGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred ccceeeCCCCcEEEEecCCCCceEEEE
Confidence 66778999999888887665 666554
No 178
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=95.98 E-value=1.3 Score=42.65 Aligned_cols=138 Identities=14% Similarity=0.129 Sum_probs=71.6
Q ss_pred EEcCCC-cEEEEeCCCceEEEc---CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCC
Q 017520 124 TSTKEG-HLIICDNANGLHKVS---EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 197 (370)
Q Consensus 124 ~~d~~G-~L~v~~~~~gi~~~~---~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~ 197 (370)
.+.|+. +.+++....|-+|+. ... .+++.....+..--.+..-++++||++ |+.. -.
T Consensus 275 ~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAag----------------c~ 337 (641)
T KOG0772|consen 275 CWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAG----------------CL 337 (641)
T ss_pred ccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhc----------------cc
Confidence 444444 344444445555544 222 555554433322234556788999987 4422 13
Q ss_pred CceEEEEeCCCCeEEEE--e----cCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCC-C-CCce
Q 017520 198 HGQLLKYDPSSNITTLV--A----DGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPG-A-PDNI 268 (370)
Q Consensus 198 ~g~l~~~d~~t~~~~~~--~----~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g-~-p~~i 268 (370)
+|.|-.|+..+..+++. . ........|.|+.||+.|.--...+ +..||+...+.- ...+. +++. + -.+.
T Consensus 338 DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp-L~~~t-gL~t~~~~tdc 415 (641)
T KOG0772|consen 338 DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP-LNVRT-GLPTPFPGTDC 415 (641)
T ss_pred CCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc-hhhhc-CCCccCCCCcc
Confidence 56677776432222221 1 1223457899999999554444444 888887654211 11111 1221 2 2457
Q ss_pred eECCCCCEEEEE
Q 017520 269 NLAPDGTFWIAI 280 (370)
Q Consensus 269 ~~d~~G~lwv~~ 280 (370)
+++++..|.++-
T Consensus 416 ~FSPd~kli~TG 427 (641)
T KOG0772|consen 416 CFSPDDKLILTG 427 (641)
T ss_pred ccCCCceEEEec
Confidence 889988866663
No 179
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.98 E-value=1.9 Score=42.76 Aligned_cols=179 Identities=11% Similarity=0.017 Sum_probs=101.4
Q ss_pred CCCcceEEcCCCcEEEEecCCeEEEEe--CCeEEE-EEecCCCceeceEEcCCCc-EEEEeCCCceEE-Ec-CCC-eEEE
Q 017520 79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGH-LIICDNANGLHK-VS-EDG-VENF 151 (370)
Q Consensus 79 ~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~-~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~-~~-~~g-~~~~ 151 (370)
..-|+++..+.|+|+-...+|.|..|| +++... +...++..+ .|+..+.+. +-|+.. .|++. +. ..+ ++.-
T Consensus 70 rsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IW-siai~p~~~~l~Igcd-dGvl~~~s~~p~~I~~~ 147 (691)
T KOG2048|consen 70 RSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIW-SIAINPENTILAIGCD-DGVLYDFSIGPDKITYK 147 (691)
T ss_pred CceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCccee-EEEeCCccceEEeecC-CceEEEEecCCceEEEE
Confidence 457889999899999998999999999 776544 334456678 899988775 666643 34333 33 333 2221
Q ss_pred EeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE----ecCCCC-ccce-
Q 017520 152 LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----ADGFYF-ANGV- 224 (370)
Q Consensus 152 ~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~----~~~~~~-p~gi- 224 (370)
... +..-..+-++.++++|. |..+. .+|.|..+|..+++.-.. ..++.. -..+
T Consensus 148 -r~l-~rq~sRvLslsw~~~~~~i~~Gs------------------~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iV 207 (691)
T KOG2048|consen 148 -RSL-MRQKSRVLSLSWNPTGTKIAGGS------------------IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIV 207 (691)
T ss_pred -eec-ccccceEEEEEecCCccEEEecc------------------cCceEEEEEcCCCceEEEeeecccccccCCceEE
Confidence 111 11113455788889887 55443 246677888776544321 223332 2333
Q ss_pred ---EEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC-CEEEEEecC
Q 017520 225 ---ALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKL 283 (370)
Q Consensus 225 ---~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~ 283 (370)
.+-.|+. +.-+++.+ |.-+|.+.....+ .+ ..+.+-.--++.+.++ +++++..++
T Consensus 208 WSv~~Lrd~t-I~sgDS~G~V~FWd~~~gTLiq--S~-~~h~adVl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 208 WSVLFLRDST-IASGDSAGTVTFWDSIFGTLIQ--SH-SCHDADVLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred EEEEEeecCc-EEEecCCceEEEEcccCcchhh--hh-hhhhcceeEEEEcCCCCeEEEccCCC
Confidence 3335665 66667777 6666644321111 11 1122223346666665 566665554
No 180
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.96 E-value=0.89 Score=42.50 Aligned_cols=152 Identities=15% Similarity=0.192 Sum_probs=87.8
Q ss_pred ceEEcCCCcEEEEeCCC-ceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCC
Q 017520 122 GLTSTKEGHLIICDNAN-GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 198 (370)
Q Consensus 122 gl~~d~~G~L~v~~~~~-gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 198 (370)
-++++||.+-.++-... -+...| .+| ....... +. ..++...+.-|||.=+|+-+ ++
T Consensus 274 yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~--~~-~~S~~sc~W~pDg~~~V~Gs-----------------~d 333 (519)
T KOG0293|consen 274 YIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS--GL-GFSVSSCAWCPDGFRFVTGS-----------------PD 333 (519)
T ss_pred EEEECCCCCeEEecCchHheeeccCCcchhhhhccc--Cc-CCCcceeEEccCCceeEecC-----------------CC
Confidence 68899998866654443 344455 566 3322221 11 13566678888886666643 45
Q ss_pred ceEEEEeCCCCeEEEEecCC--CCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC
Q 017520 199 GQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 275 (370)
Q Consensus 199 g~l~~~d~~t~~~~~~~~~~--~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~ 275 (370)
..++.+|.++..... ..+. .....+++++||+.++...... +..|+..... .+. ... .......+.++.||+
T Consensus 334 r~i~~wdlDgn~~~~-W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~--dr~-lis-e~~~its~~iS~d~k 408 (519)
T KOG0293|consen 334 RTIIMWDLDGNILGN-WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV--DRG-LIS-EEQPITSFSISKDGK 408 (519)
T ss_pred CcEEEecCCcchhhc-ccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh--hhc-ccc-ccCceeEEEEcCCCc
Confidence 778888887443221 1222 2345788999999888888766 8888754321 111 111 112245688899999
Q ss_pred EEEEEecCc-hhHHHhhhcchhHHH
Q 017520 276 FWIAIIKLD-ARRMKILNSSKLIKH 299 (370)
Q Consensus 276 lwv~~~~~~-~~~~~~~~~~~~~~~ 299 (370)
+.+...... ..++|+- .+..+|+
T Consensus 409 ~~LvnL~~qei~LWDl~-e~~lv~k 432 (519)
T KOG0293|consen 409 LALVNLQDQEIHLWDLE-ENKLVRK 432 (519)
T ss_pred EEEEEcccCeeEEeecc-hhhHHHH
Confidence 888765543 3444432 3344444
No 181
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=95.93 E-value=0.15 Score=48.18 Aligned_cols=137 Identities=15% Similarity=0.215 Sum_probs=89.1
Q ss_pred ceEEcC-CCcEEEEeCCCc-eEEEc--CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceeccccc
Q 017520 122 GLTSTK-EGHLIICDNANG-LHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG 195 (370)
Q Consensus 122 gl~~d~-~G~L~v~~~~~g-i~~~~--~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~ 195 (370)
.+.+-+ .+.|+.+....+ |..++ .++ ++.+.... ..+.++.+..+|.-+++.+
T Consensus 219 ai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~-----k~Vrd~~~s~~g~~fLS~s---------------- 277 (503)
T KOG0282|consen 219 AIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHR-----KPVRDASFNNCGTSFLSAS---------------- 277 (503)
T ss_pred hhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcch-----hhhhhhhccccCCeeeeee----------------
Confidence 455556 788888765554 34444 334 55543221 2467889999998877765
Q ss_pred CCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC-Cc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCC
Q 017520 196 KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-WK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPD 273 (370)
Q Consensus 196 ~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~-~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~ 273 (370)
.+..|-.+|.+||++..-+..-.-|+.+.+.||+..++++.. .+ |..||+..++. ...+...+ +-...|.+-++
T Consensus 278 -fD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv--vqeYd~hL-g~i~~i~F~~~ 353 (503)
T KOG0282|consen 278 -FDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV--VQEYDRHL-GAILDITFVDE 353 (503)
T ss_pred -cceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH--HHHHHhhh-hheeeeEEccC
Confidence 345688899999998877777778899999999844555554 44 99999865432 12222222 23445666677
Q ss_pred CCEEEEEecC
Q 017520 274 GTFWIAIIKL 283 (370)
Q Consensus 274 G~lwv~~~~~ 283 (370)
|.-+|++...
T Consensus 354 g~rFissSDd 363 (503)
T KOG0282|consen 354 GRRFISSSDD 363 (503)
T ss_pred CceEeeeccC
Confidence 8778877654
No 182
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=95.93 E-value=0.43 Score=44.32 Aligned_cols=227 Identities=17% Similarity=0.150 Sum_probs=117.4
Q ss_pred CCceeceEEcCCCcEEEEeCCCceEEEc-CCC--e----------E--EEEe-ecCCcccccccceEEcCCCcEEEEeCC
Q 017520 117 SQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--V----------E--NFLS-YVNGSKLRFANDVVEASDGSLYFTVSS 180 (370)
Q Consensus 117 ~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~----------~--~~~~-~~~g~~~~~~~~l~~d~~G~l~v~d~~ 180 (370)
...+ ++.|+++|+|.....+.|...+. +.. . + .++. ...+ ....+.+++..+++++.++.+
T Consensus 66 ~aVN-~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s- 142 (434)
T KOG1009|consen 66 RAVN-VVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGS- 142 (434)
T ss_pred ceeE-EEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCceeeeee-
Confidence 3467 89999999999977666655544 220 0 0 0000 1111 123567888888888766643
Q ss_pred CCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCC---------
Q 017520 181 SKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGE--------- 249 (370)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~--------- 249 (370)
..+.++.+|...|++.... +.-..++|+++||-++.+-.-...+ .+.+.+.-.
T Consensus 143 ----------------~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~ 206 (434)
T KOG1009|consen 143 ----------------VDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLD 206 (434)
T ss_pred ----------------ccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeee
Confidence 3467888888878776544 3456789999988776332222222 111111100
Q ss_pred ---------CCC-ceeeecc-CCCCCCCceeECCCCCEEEEEecC----chh--HHHhhhcchhHHHHHHhCCccccc--
Q 017520 250 ---------RKG-KLETFAE-NLPGAPDNINLAPDGTFWIAIIKL----DAR--RMKILNSSKLIKHVLAAYPKLFSQ-- 310 (370)
Q Consensus 250 ---------~~~-~~~~~~~-~~~g~p~~i~~d~~G~lwv~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~-- 310 (370)
..+ ..+.|.+ +++.+-..+.+.++|.+++.-.+. ++. ..-++..+..+++.++.+|..-.+
T Consensus 207 ~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~l 286 (434)
T KOG1009|consen 207 IMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPAL 286 (434)
T ss_pred EeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceE
Confidence 000 1112221 233334445666777766653221 111 111233344555566667665432
Q ss_pred ------------------cccCCCceEEEEECCCCcEEE-------EEeCCCCCccccceeEEEECC--EEEEEeCCCC
Q 017520 311 ------------------FITLGGGAHLIHVAEDGTIIR-------NLVDPTGQLMSFVTSGLQVDN--HLYVISLTSN 362 (370)
Q Consensus 311 ------------------~~~~~~~g~v~~~~~~g~~~~-------~~~~~~g~~~~~~t~~~~~~g--~L~~gs~~~~ 362 (370)
.....+|.+++.+..+..+.. -|.--++..+..+|.+...++ .|.++|..+-
T Consensus 287 avr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGy 365 (434)
T KOG1009|consen 287 AVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGF 365 (434)
T ss_pred EEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCc
Confidence 122456677766654333322 111223455666677776543 5777777764
No 183
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.90 E-value=1.3 Score=41.23 Aligned_cols=63 Identities=19% Similarity=0.388 Sum_probs=39.9
Q ss_pred CccceEEccCCCEEEEEeCC------c-EEEEEeCCCCCCceeeeccCC-------CC-----CCCceeECCCCC-EEEE
Q 017520 220 FANGVALSRDEDYVVVCESW------K-CRKYWLKGERKGKLETFAENL-------PG-----APDNINLAPDGT-FWIA 279 (370)
Q Consensus 220 ~p~gi~~~~dg~~l~v~~~~------~-l~~~~~~~~~~~~~~~~~~~~-------~g-----~p~~i~~d~~G~-lwv~ 279 (370)
-+.||++.++|..++..|.. . |++|+.+|........ .... .+ ...++++.++|+ +|++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~v-P~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPV-PAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEcc-ccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 46789998888855555666 5 9999987643222211 1111 11 234589999998 8998
Q ss_pred EecC
Q 017520 280 IIKL 283 (370)
Q Consensus 280 ~~~~ 283 (370)
....
T Consensus 165 ~E~~ 168 (326)
T PF13449_consen 165 MESP 168 (326)
T ss_pred ECcc
Confidence 8654
No 184
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=95.75 E-value=0.94 Score=41.67 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=67.5
Q ss_pred ccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEEccCCCEEEEEeCC
Q 017520 161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESW 239 (370)
Q Consensus 161 ~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~~~dg~~l~v~~~~ 239 (370)
..+..|...+||..|++.+- .+..+..+|+++++...+. .++....-+-++|||+.++.+.-.
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d 259 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD 259 (445)
T ss_pred ceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc
Confidence 45677888999999998653 4567889999998877665 344444457899999966666665
Q ss_pred cEEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEec
Q 017520 240 KCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK 282 (370)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~ 282 (370)
.++++|-.... -+.+.+. ..+|....-+-++.|. +.++..+
T Consensus 260 avfrlw~e~q~-wt~erw~-lgsgrvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 260 AVFRLWQENQS-WTKERWI-LGSGRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred ceeeeehhccc-ceeccee-ccCCceeeeeecCCCCEEEEEEcC
Confidence 58888732211 1223332 2344555666788885 4444443
No 185
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=0.22 Score=46.30 Aligned_cols=147 Identities=15% Similarity=0.164 Sum_probs=77.9
Q ss_pred CCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEEeecCCcccccccceEEcCC-CcEEEEeCCCCCCCccceec
Q 017520 116 DSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLD 191 (370)
Q Consensus 116 ~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~ 191 (370)
..... .|.|.+||.+.+.-.......++ .+| +....+.-....+...+ +-.|++ ..+++.+..
T Consensus 186 ~~eV~-DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cR-F~~d~~~~~l~laa~~----------- 252 (398)
T KOG0771|consen 186 HAEVK-DLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCR-FSVDNAQETLRLAASQ----------- 252 (398)
T ss_pred cCccc-cceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhce-ecccCCCceEEEEEec-----------
Confidence 34566 89999999887765545444444 556 33332211112222222 222332 267766542
Q ss_pred ccccCCCceEEEEeCCCC------eEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCC
Q 017520 192 ILEGKPHGQLLKYDPSSN------ITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGA 264 (370)
Q Consensus 192 ~~~~~~~g~l~~~d~~t~------~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~ 264 (370)
.+.++|..++.... +.+...........++++.||+++-++...+ |..|+...- .....+-....+.
T Consensus 253 ----~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l--q~~~~vk~aH~~~ 326 (398)
T KOG0771|consen 253 ----FPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL--QRLQYVKEAHLGF 326 (398)
T ss_pred ----CCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEecee--eeeEeehhhheee
Confidence 13344554443221 1122223344567889999999888888877 888875431 1121122223345
Q ss_pred CCceeECCCCCEEEEEe
Q 017520 265 PDNINLAPDGTFWIAII 281 (370)
Q Consensus 265 p~~i~~d~~G~lwv~~~ 281 (370)
..++++.+|-+.-....
T Consensus 327 VT~ltF~Pdsr~~~svS 343 (398)
T KOG0771|consen 327 VTGLTFSPDSRYLASVS 343 (398)
T ss_pred eeeEEEcCCcCcccccc
Confidence 66777777766555543
No 186
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=2.9 Score=43.12 Aligned_cols=127 Identities=14% Similarity=0.182 Sum_probs=81.5
Q ss_pred CCcCCCcceEEcCCCcEEEEe-cCCeEEEEe-CC--eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCCeEEE
Q 017520 76 GSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENF 151 (370)
Q Consensus 76 ~~~~~P~~i~~d~~G~l~v~~-~~g~I~~~~-~g--~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g~~~~ 151 (370)
|..++..++.+++..++.++. .|+.|..|| +. .++.+....++-+ -++..|..+||.+.+++|+..+.-..
T Consensus 248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNLfAAgHDsGm~VFkleR---- 322 (1202)
T KOG0292|consen 248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNLFAAGHDSGMIVFKLER---- 322 (1202)
T ss_pred cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcceeeeecCCceEEEEEcc----
Confidence 666778889999877777776 788888898 43 3667766777888 89999999999998877755543000
Q ss_pred EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec--C----CCCccceE
Q 017520 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--G----FYFANGVA 225 (370)
Q Consensus 152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--~----~~~p~gi~ 225 (370)
.....++..++-+|+-+ ..|+.+|..+.+-..+.. . ..-|..+.
T Consensus 323 ----------Erpa~~v~~n~LfYvkd--------------------~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~sms 372 (1202)
T KOG0292|consen 323 ----------ERPAYAVNGNGLFYVKD--------------------RFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLS 372 (1202)
T ss_pred ----------cCceEEEcCCEEEEEcc--------------------ceEEeeeccccccceeEeccCCCcccCCcceee
Confidence 01123443333444443 357777766533322221 1 12346788
Q ss_pred EccCCCEEEEEe
Q 017520 226 LSRDEDYVVVCE 237 (370)
Q Consensus 226 ~~~dg~~l~v~~ 237 (370)
++|..+.+.++.
T Consensus 373 YNpae~~vlics 384 (1202)
T KOG0292|consen 373 YNPAENAVLICS 384 (1202)
T ss_pred eccccCeEEEEe
Confidence 888877777773
No 187
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.67 E-value=1.3 Score=38.46 Aligned_cols=126 Identities=11% Similarity=0.043 Sum_probs=81.1
Q ss_pred cCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC----eEEEEeecCCcccccccceE
Q 017520 97 RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG----VENFLSYVNGSKLRFANDVV 167 (370)
Q Consensus 97 ~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g----~~~~~~~~~g~~~~~~~~l~ 167 (370)
.+..|+.|+ +|+ .++|....++.+ .++|..+-.+.+.... ..+..+| +.. ++.+..... .+..+.
T Consensus 79 gDk~v~vwDV~TGkv~Rr~rgH~aqVN-tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D-----~V~Si~ 152 (307)
T KOG0316|consen 79 GDKAVQVWDVNTGKVDRRFRGHLAQVN-TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD-----GVSSID 152 (307)
T ss_pred CCceEEEEEcccCeeeeecccccceee-EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC-----ceeEEE
Confidence 667788888 776 466777778888 9999877777765444 4566666 544 232222111 232333
Q ss_pred EcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-cceEEccCCCEEEEEeCCc-EEEEE
Q 017520 168 EASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVVVCESWK-CRKYW 245 (370)
Q Consensus 168 ~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-~gi~~~~dg~~l~v~~~~~-l~~~~ 245 (370)
+ .++..++-+ .+|++.+||...|+.. .+.+..| +.+.+++|++..+++..+. |..+|
T Consensus 153 v--~~heIvaGS-----------------~DGtvRtydiR~G~l~--sDy~g~pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 153 V--AEHEIVAGS-----------------VDGTVRTYDIRKGTLS--SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred e--cccEEEeec-----------------cCCcEEEEEeecceee--hhhcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence 3 344444432 5789999998755432 2334444 7899999999999888888 77777
Q ss_pred eCCC
Q 017520 246 LKGE 249 (370)
Q Consensus 246 ~~~~ 249 (370)
-+++
T Consensus 212 k~tG 215 (307)
T KOG0316|consen 212 KETG 215 (307)
T ss_pred cchh
Confidence 5543
No 188
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=95.64 E-value=0.83 Score=42.61 Aligned_cols=125 Identities=13% Similarity=0.077 Sum_probs=75.4
Q ss_pred cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCCceEEEc-CCC-eEEEEeecCCc-ccccccceEEcC
Q 017520 97 RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNGS-KLRFANDVVEAS 170 (370)
Q Consensus 97 ~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~-~~~~~~~l~~d~ 170 (370)
.+++|.-|+ ......-.+.++... ++....+|. |..+.-+.-+-.++ .+- +...... .+. --...+.+.++|
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~gg~vt-Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA-~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLGGRVT-SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA-EGFKCASDWTRVVFSP 397 (459)
T ss_pred cccceEEEeccCCceeeEeecCccee-eEeeccCCeEEeeecCCCceeeeecccccEEEEeec-cccccccccceeEECC
Confidence 566666666 333333334455666 777777775 55554334455555 333 4433322 221 113467789999
Q ss_pred CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCC---ccceEEccCCCEEEEEeCCc
Q 017520 171 DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF---ANGVALSRDEDYVVVCESWK 240 (370)
Q Consensus 171 ~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~---p~gi~~~~dg~~l~v~~~~~ 240 (370)
+|....+ .+ .+|.|+.|+..+++++.....-.. .+.++|++-|..+.-++...
T Consensus 398 d~~YvaA-GS----------------~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~ 453 (459)
T KOG0288|consen 398 DGSYVAA-GS----------------ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK 453 (459)
T ss_pred CCceeee-cc----------------CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc
Confidence 9884444 33 578999999999999876544332 35677888888777666544
No 189
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=95.60 E-value=0.37 Score=44.16 Aligned_cols=142 Identities=13% Similarity=0.172 Sum_probs=90.3
Q ss_pred eEEc-CCCcEEEEecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEEeecC
Q 017520 84 ASMD-KNGVIYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVN 156 (370)
Q Consensus 84 i~~d-~~G~l~v~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~~~~ 156 (370)
+.+. -|+.++.++.|+.|.-|| .|+ ............ +++..|+.+++.......+-.+. +.| ...+ .
T Consensus 283 V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvr-al~lhP~e~~fASas~dnik~w~~p~g~f~~nl----s 357 (460)
T KOG0285|consen 283 VMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVR-ALCLHPKENLFASASPDNIKQWKLPEGEFLQNL----S 357 (460)
T ss_pred EEeecCCCceEEecCCceEEEeeeccCceeEeeecccceee-EEecCCchhhhhccCCccceeccCCccchhhcc----c
Confidence 4443 378999999999999999 565 334444444456 88888888888876666777777 777 3322 2
Q ss_pred CcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec------CCC---CccceEEc
Q 017520 157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD------GFY---FANGVALS 227 (370)
Q Consensus 157 g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~------~~~---~p~gi~~~ 227 (370)
+. ..-+|.|++..||.++.+. .+|.++.+|-+++....... .+. .....+||
T Consensus 358 gh-~~iintl~~nsD~v~~~G~------------------dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD 418 (460)
T KOG0285|consen 358 GH-NAIINTLSVNSDGVLVSGG------------------DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD 418 (460)
T ss_pred cc-cceeeeeeeccCceEEEcC------------------CceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence 21 1356778888777665552 45778888876653322111 111 22345778
Q ss_pred cCCCEEEEEeCCc-EEEEEeCCC
Q 017520 228 RDEDYVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 228 ~dg~~l~v~~~~~-l~~~~~~~~ 249 (370)
..|..|+-++.+. |..|.-+..
T Consensus 419 ktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 419 KTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ccCceEEeccCCcceEEEecccc
Confidence 8888788888877 666654443
No 190
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.57 E-value=0.88 Score=45.87 Aligned_cols=144 Identities=15% Similarity=0.083 Sum_probs=83.0
Q ss_pred ceEEcCCCcEEEEeCCCceEEEc---CCC-eEEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccC
Q 017520 122 GLTSTKEGHLIICDNANGLHKVS---EDG-VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGK 196 (370)
Q Consensus 122 gl~~d~~G~L~v~~~~~gi~~~~---~~g-~~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~ 196 (370)
.|....++-|+-+..+ .-+++. .+. +..+... .++..++|.| |.+.+++-+
T Consensus 374 DlSWSKn~fLLSSSMD-KTVRLWh~~~~~CL~~F~Hn------dfVTcVaFnPvDDryFiSGS----------------- 429 (712)
T KOG0283|consen 374 DLSWSKNNFLLSSSMD-KTVRLWHPGRKECLKVFSHN------DFVTCVAFNPVDDRYFISGS----------------- 429 (712)
T ss_pred ecccccCCeeEecccc-ccEEeecCCCcceeeEEecC------CeeEEEEecccCCCcEeecc-----------------
Confidence 5666655555555444 344443 233 6666432 4788899998 446666533
Q ss_pred CCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeecc----CC-CCCCCceeE
Q 017520 197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAE----NL-PGAPDNINL 270 (370)
Q Consensus 197 ~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~----~~-~g~p~~i~~ 270 (370)
-++.+..|+-...++-...+--.....+++.|||+..++....+ ++.|+..+.+......+.. +. .....|+.+
T Consensus 430 LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~ 509 (712)
T KOG0283|consen 430 LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQF 509 (712)
T ss_pred cccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEe
Confidence 34666667665555544433334567899999999888888888 7778766653322111110 01 112444444
Q ss_pred CCCC--CEEEEEecCchhHHH
Q 017520 271 APDG--TFWIAIIKLDARRMK 289 (370)
Q Consensus 271 d~~G--~lwv~~~~~~~~~~~ 289 (370)
.+.. .+.|+++..|..++|
T Consensus 510 ~p~~~~~vLVTSnDSrIRI~d 530 (712)
T KOG0283|consen 510 FPGDPDEVLVTSNDSRIRIYD 530 (712)
T ss_pred cCCCCCeEEEecCCCceEEEe
Confidence 3211 588888877654444
No 191
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.56 E-value=0.24 Score=44.14 Aligned_cols=115 Identities=13% Similarity=0.113 Sum_probs=66.5
Q ss_pred EEccCCCEEEEEeCCc------EEEEEeCCC--CCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchh
Q 017520 225 ALSRDEDYVVVCESWK------CRKYWLKGE--RKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKL 296 (370)
Q Consensus 225 ~~~~dg~~l~v~~~~~------l~~~~~~~~--~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~ 296 (370)
++++||++||.+|.+- |-+||.... +.+++. +..-.|..+....||+..+..+++ |..+|-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~----t~GiGpHev~lm~DGrtlvvanGG-------Iethpd 188 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFS----THGIGPHEVTLMADGRTLVVANGG-------IETHPD 188 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccc----cCCcCcceeEEecCCcEEEEeCCc-------eecccc
Confidence 5799999999998643 677776532 222222 222248889999999988888776 333322
Q ss_pred HHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcccccee-EEEECCEEEEEeC
Q 017520 297 IKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTS-GLQVDNHLYVISL 359 (370)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~-~~~~~g~L~~gs~ 359 (370)
..+.-. .+. .+..+ +..+| .+|++++.-.-+..+....+.- .+..+|++|+|..
T Consensus 189 fgR~~l----Nld----sMePS-lvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 189 FGRTEL----NLD----SMEPS-LVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred cCcccc----chh----hcCcc-EEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 211100 000 11112 44556 7899888765554333334433 3445699999854
No 192
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=95.46 E-value=0.17 Score=46.69 Aligned_cols=131 Identities=12% Similarity=0.051 Sum_probs=77.2
Q ss_pred cEEEEecCCeEEEEeCC--e--EEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC--eEEEEeecCCccccc
Q 017520 91 VIYTATRDGWIKRLQDG--T--WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRF 162 (370)
Q Consensus 91 ~l~v~~~~g~I~~~~~g--~--~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g--~~~~~~~~~g~~~~~ 162 (370)
+|..|+.+..++.|+.. + ++.......-.+ .+.|+||++....... ..|...+ .+| +..+... ...
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn-~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH-----v~~ 411 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN-HVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH-----VAA 411 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhchhhhee-eEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc-----cce
Confidence 34455566667777611 1 222222333456 7899998876665444 4455555 677 3333221 246
Q ss_pred ccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-CCCCccceEEccCCCEEEEEeCCc-
Q 017520 163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESWK- 240 (370)
Q Consensus 163 ~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~~~p~gi~~~~dg~~l~v~~~~~- 240 (370)
++.++...|.+|.++.+ .+..|-.++..++++..=.. .-....++.++|||. .+++....
T Consensus 412 VYqvawsaDsRLlVS~S-----------------kDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~-rV~sggkdk 473 (480)
T KOG0271|consen 412 VYQVAWSADSRLLVSGS-----------------KDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQ-RVASGGKDK 473 (480)
T ss_pred eEEEEeccCccEEEEcC-----------------CCceEEEEEeeeeeecccCCCCCceEEEEEecCCCc-eeecCCCce
Confidence 78899999999999965 34566677776665432122 223456788999998 44443333
Q ss_pred EEEEE
Q 017520 241 CRKYW 245 (370)
Q Consensus 241 l~~~~ 245 (370)
++++|
T Consensus 474 v~~lw 478 (480)
T KOG0271|consen 474 VLRLW 478 (480)
T ss_pred EEEee
Confidence 77766
No 193
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=95.44 E-value=0.094 Score=46.96 Aligned_cols=106 Identities=14% Similarity=0.186 Sum_probs=66.4
Q ss_pred cccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE---EEEecCCCCccceEEccCCCEEEEEeC
Q 017520 162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT---TLVADGFYFANGVALSRDEDYVVVCES 238 (370)
Q Consensus 162 ~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~---~~~~~~~~~p~gi~~~~dg~~l~v~~~ 238 (370)
.+|.+.+.|...|.++.+ .++.|-.+|-..... ..++........+.+.|.|+++.++..
T Consensus 174 evn~l~FHPre~ILiS~s-----------------rD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd 236 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGS-----------------RDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD 236 (430)
T ss_pred cccceeecchhheEEecc-----------------CCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC
Confidence 578899999999988865 345666677532111 112233334467889999998887766
Q ss_pred Cc-EEEEEeCCCCCCceeeeccCCC-----CCCCceeECCCCCEEEEEec-CchhHHH
Q 017520 239 WK-CRKYWLKGERKGKLETFAENLP-----GAPDNINLAPDGTFWIAIIK-LDARRMK 289 (370)
Q Consensus 239 ~~-l~~~~~~~~~~~~~~~~~~~~~-----g~p~~i~~d~~G~lwv~~~~-~~~~~~~ 289 (370)
.. +..||+.+ .+.|....| +-...+..++.|++|++... |...+||
T Consensus 237 Hp~~rlYdv~T-----~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 237 HPTLRLYDVNT-----YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD 289 (430)
T ss_pred CCceeEEeccc-----eeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeec
Confidence 55 88898753 555543222 12233567899999998644 3334444
No 194
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.41 E-value=0.78 Score=43.95 Aligned_cols=108 Identities=18% Similarity=0.270 Sum_probs=67.6
Q ss_pred ccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCC--Cc--cceEEccCCCEEEEE
Q 017520 161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY--FA--NGVALSRDEDYVVVC 236 (370)
Q Consensus 161 ~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~--~p--~gi~~~~dg~~l~v~ 236 (370)
+++...-..+||+-.+.-. ....|-.||..+-..++-. .+. .| ..+++++|.+..|-+
T Consensus 466 nyiRSckL~pdgrtLivGG-----------------eastlsiWDLAapTprika-eltssapaCyALa~spDakvcFsc 527 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGG-----------------EASTLSIWDLAAPTPRIKA-ELTSSAPACYALAISPDAKVCFSC 527 (705)
T ss_pred cceeeeEecCCCceEEecc-----------------ccceeeeeeccCCCcchhh-hcCCcchhhhhhhcCCccceeeee
Confidence 4566666678886444321 1245777776544333211 111 23 468889999977777
Q ss_pred eCCc-EEEEEeCCCCCCceeeeccCCCCCCCc---eeECCCC-CEEEEEecCchhHHHhhh
Q 017520 237 ESWK-CRKYWLKGERKGKLETFAENLPGAPDN---INLAPDG-TFWIAIIKLDARRMKILN 292 (370)
Q Consensus 237 ~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~---i~~d~~G-~lwv~~~~~~~~~~~~~~ 292 (370)
-+.+ |.+||+... ..+..+.|++|| |.+..|| +||.|-..+....||+-.
T Consensus 528 csdGnI~vwDLhnq------~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 528 CSDGNIAVWDLHNQ------TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE 582 (705)
T ss_pred ccCCcEEEEEcccc------eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhh
Confidence 6767 999998643 122345677777 5677889 699998777666666543
No 195
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.40 E-value=3.2 Score=41.23 Aligned_cols=147 Identities=10% Similarity=0.020 Sum_probs=83.4
Q ss_pred CcceEEcC-CCcEEEEecCCeEEEEe--CCe-EE-EEE-ecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCCeEEEEe
Q 017520 81 PEDASMDK-NGVIYTATRDGWIKRLQ--DGT-WV-NWK-FIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLS 153 (370)
Q Consensus 81 P~~i~~d~-~G~l~v~~~~g~I~~~~--~g~-~~-~~~-~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g~~~~~~ 153 (370)
-.++|+.. ++.|-++-.+|.|-.|+ .+- .+ ++. +.....- +|++.+.|+|+=.+..+.|..+| .++......
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE-~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~ 106 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIE-SLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNI 106 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCcee-eEEEccCCeEEeecCCceEEEEecccCceeEEe
Confidence 45667764 56677777888888888 332 12 222 2233455 89998788898877666688888 455111111
Q ss_pred ecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE--e-cCCCCccceEEccC
Q 017520 154 YVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--A-DGFYFANGVALSRD 229 (370)
Q Consensus 154 ~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~--~-~~~~~p~gi~~~~d 229 (370)
...+ ..+..+++.+.+. +-|+. .+|.++-++...+.++.. + ..-...-.+.++++
T Consensus 107 d~~g---g~IWsiai~p~~~~l~Igc------------------ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~ 165 (691)
T KOG2048|consen 107 DSNG---GAIWSIAINPENTILAIGC------------------DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT 165 (691)
T ss_pred cCCC---cceeEEEeCCccceEEeec------------------CCceEEEEecCCceEEEEeecccccceEEEEEecCC
Confidence 1112 3456777776663 44552 224455555444444321 1 11122335677788
Q ss_pred CCEEEEEeCCc-EEEEEeCCC
Q 017520 230 EDYVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 230 g~~l~v~~~~~-l~~~~~~~~ 249 (370)
+..+.....++ |..+|.+.+
T Consensus 166 ~~~i~~Gs~Dg~Iriwd~~~~ 186 (691)
T KOG2048|consen 166 GTKIAGGSIDGVIRIWDVKSG 186 (691)
T ss_pred ccEEEecccCceEEEEEcCCC
Confidence 87666666667 777886543
No 196
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=95.37 E-value=0.21 Score=46.41 Aligned_cols=173 Identities=12% Similarity=0.136 Sum_probs=98.0
Q ss_pred ceEEcCCC-cEEEEecCCeEEEEe-C-CeEEEEEe-cCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEEeec
Q 017520 83 DASMDKNG-VIYTATRDGWIKRLQ-D-GTWVNWKF-IDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYV 155 (370)
Q Consensus 83 ~i~~d~~G-~l~v~~~~g~I~~~~-~-g~~~~~~~-~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~~~ 155 (370)
.|...++| +|.+|+..|...-|+ . -.++.+.. ...... ++....+|.-.|....+|.++|. ++- ++.+
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr-~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~---- 175 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVR-TMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII---- 175 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccce-eEEEccCCCEEEEcCCCceEEecccchhhhHHh----
Confidence 34556775 677888777777666 2 12333222 222344 88899888877765557888887 432 3322
Q ss_pred CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE-EEEecCCCCccceEEccCCCEEE
Q 017520 156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVV 234 (370)
Q Consensus 156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~-~~~~~~~~~p~gi~~~~dg~~l~ 234 (370)
....-..+.+++++|....|++.+ .+++|..+|..-.+- +++.....-+..+.++|....+.
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~S-----------------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLia 238 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCS-----------------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIA 238 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEec-----------------CCCeEEEEeccCCchhheeccCCCCcceeccCCccceeE
Confidence 111124688999999888888865 457777777543222 23333445677889999876444
Q ss_pred EEeCCc-EEEEEeCCCCCCce-eeeccCCCCCCCceeECCCCCEEEEEe
Q 017520 235 VCESWK-CRKYWLKGERKGKL-ETFAENLPGAPDNINLAPDGTFWIAII 281 (370)
Q Consensus 235 v~~~~~-l~~~~~~~~~~~~~-~~~~~~~~g~p~~i~~d~~G~lwv~~~ 281 (370)
.....+ |..+|.+. ++. ..+. ..-...-.+.+.++||+..+..
T Consensus 239 sgskDnlVKlWDprS---g~cl~tlh-~HKntVl~~~f~~n~N~Llt~s 283 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRS---GSCLATLH-GHKNTVLAVKFNPNGNWLLTGS 283 (464)
T ss_pred EccCCceeEeecCCC---cchhhhhh-hccceEEEEEEcCCCCeeEEcc
Confidence 444444 55555433 221 1111 1111123456677786555543
No 197
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.36 E-value=4.2 Score=42.34 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=38.0
Q ss_pred CCcEEEEecCCeEEEEe--CCeEEEEEecCCCc---------eeceEEc-----------------CCCcEEEEeCCCce
Q 017520 89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQT---------LVGLTST-----------------KEGHLIICDNANGL 140 (370)
Q Consensus 89 ~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p---------~~gl~~d-----------------~~G~L~v~~~~~gi 140 (370)
+|.||+++.++.|+.+| +|+...-....... . |+++- .++++|+++.+..+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cR-Gvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCR-GVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccc-ceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 68999999999999999 78754322211100 1 22221 23478888777788
Q ss_pred EEEc-CCC
Q 017520 141 HKVS-EDG 147 (370)
Q Consensus 141 ~~~~-~~g 147 (370)
+.+| ++|
T Consensus 273 iALDA~TG 280 (764)
T TIGR03074 273 IALDADTG 280 (764)
T ss_pred EEEECCCC
Confidence 9999 678
No 198
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.34 E-value=2.9 Score=42.02 Aligned_cols=173 Identities=13% Similarity=0.117 Sum_probs=103.7
Q ss_pred eEEcCCCcEEEEecCCeEEEEe--CCeEE-EEEe--cCCCceeceEEcCCCcEEEEeCCCceEEEc--CCC--eEEEEee
Q 017520 84 ASMDKNGVIYTATRDGWIKRLQ--DGTWV-NWKF--IDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSY 154 (370)
Q Consensus 84 i~~d~~G~l~v~~~~g~I~~~~--~g~~~-~~~~--~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g--~~~~~~~ 154 (370)
++++++|...+..-+..|..++ ++... .... ...... .+++++|+...+.....++.++. +.| ++.....
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~it-a~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~ 103 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEIT-ALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAI 103 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhh-eeeecCCccEEEEeeccceEEEEEcccchHhHhHhhc
Confidence 8999999766666556788888 67653 1111 112344 78999998876666666666655 566 3332211
Q ss_pred cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCcc-ceEEccCCCE-
Q 017520 155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN-GVALSRDEDY- 232 (370)
Q Consensus 155 ~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~-gi~~~~dg~~- 232 (370)
-. .-+-.+++++.|.+..+-. ..+.+.++|-+.+..+..+.+...+. .+.+.++-+.
T Consensus 104 He----~Pvi~ma~~~~g~LlAtgg-----------------aD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~ 162 (775)
T KOG0319|consen 104 HE----APVITMAFDPTGTLLATGG-----------------ADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRW 162 (775)
T ss_pred cC----CCeEEEEEcCCCceEEecc-----------------ccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchh
Confidence 01 1234689999996655532 56788899988788887777765553 4667776542
Q ss_pred -EEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520 233 -VVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 280 (370)
Q Consensus 233 -l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~ 280 (370)
|+..++.+ +..|++..... ...... ..-.-..++.+.+|++--++.
T Consensus 163 lL~sg~~D~~v~vwnl~~~~t-cl~~~~-~H~S~vtsL~~~~d~~~~ls~ 210 (775)
T KOG0319|consen 163 LLASGATDGTVRVWNLNDKRT-CLHTMI-LHKSAVTSLAFSEDSLELLSV 210 (775)
T ss_pred heeecCCCceEEEEEcccCch-HHHHHH-hhhhheeeeeeccCCceEEEe
Confidence 34445555 88898764322 111111 111234567777777644443
No 199
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.26 E-value=1.8 Score=45.14 Aligned_cols=148 Identities=16% Similarity=0.136 Sum_probs=83.3
Q ss_pred cCCCceeceEEcCCCcEEEEeCCCceEEEc-CC--C-eEEEE--------------eecCCcccccccceEEcCCCcEEE
Q 017520 115 IDSQTLVGLTSTKEGHLIICDNANGLHKVS-ED--G-VENFL--------------SYVNGSKLRFANDVVEASDGSLYF 176 (370)
Q Consensus 115 ~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~--g-~~~~~--------------~~~~g~~~~~~~~l~~d~~G~l~v 176 (370)
..+... ++.+.+||..+....+.++..+. .. | -..+. ....+. -..+-+++.+|++.+.+
T Consensus 68 h~~sv~-CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H-~~DV~Dv~Wsp~~~~lv 145 (942)
T KOG0973|consen 68 HDGSVN-CVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH-DSDVLDVNWSPDDSLLV 145 (942)
T ss_pred ccCcee-EEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecC-CCccceeccCCCccEEE
Confidence 345566 89999999644433455654444 32 1 11110 001111 13456788899998888
Q ss_pred EeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-ecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCce
Q 017520 177 TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKL 254 (370)
Q Consensus 177 ~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~ 254 (370)
+.+ -++.|..||..+.+.... ......+.|+.|||-|+++-....++ |..|.... .+..
T Consensus 146 S~s-----------------~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d--w~i~ 206 (942)
T KOG0973|consen 146 SVS-----------------LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD--WGIE 206 (942)
T ss_pred Eec-----------------ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc--ceee
Confidence 865 357899999877654333 34456789999999999444444444 55454322 1111
Q ss_pred eeec---cCCCC--CCCceeECCCCCEEEEEecC
Q 017520 255 ETFA---ENLPG--APDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 255 ~~~~---~~~~g--~p~~i~~d~~G~lwv~~~~~ 283 (370)
+... +..++ +-..+-.++||++.++.+..
T Consensus 207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 207 KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred EeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 1111 11222 22234458899888876654
No 200
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.23 E-value=1.1 Score=41.33 Aligned_cols=176 Identities=15% Similarity=0.141 Sum_probs=91.9
Q ss_pred CCcCCCcceEEcCCC--cEEEEecCCeEEEEe-CC--eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC--e
Q 017520 76 GSVNHPEDASMDKNG--VIYTATRDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--V 148 (370)
Q Consensus 76 ~~~~~P~~i~~d~~G--~l~v~~~~g~I~~~~-~g--~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~ 148 (370)
|.-.|-.++|-.+.- .+..|+.||.|..|| .. ....+....|-.. ||+++....+++++ +..+-.+.-+| .
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~-Gi~v~~~~~~tvgd-DKtvK~wk~~~~p~ 141 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVR-GICVTQTSFFTVGD-DKTVKQWKIDGPPL 141 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCcee-eEEecccceEEecC-CcceeeeeccCCcc
Confidence 333456667766543 466777899999999 32 2455555666677 99999744566665 33233322223 2
Q ss_pred EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCC-CCeEEEEecCCCCccceEEc
Q 017520 149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNITTLVADGFYFANGVALS 227 (370)
Q Consensus 149 ~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-t~~~~~~~~~~~~p~gi~~~ 227 (370)
..+... ....++.-...++++.|.. ..+-.||.. +.-+..+..+......+.++
T Consensus 142 ~tilg~------s~~~gIdh~~~~~~FaTcG-------------------e~i~IWD~~R~~Pv~smswG~Dti~svkfN 196 (433)
T KOG0268|consen 142 HTILGK------SVYLGIDHHRKNSVFATCG-------------------EQIDIWDEQRDNPVSSMSWGADSISSVKFN 196 (433)
T ss_pred eeeecc------ccccccccccccccccccC-------------------ceeeecccccCCccceeecCCCceeEEecC
Confidence 222111 1222333333344554422 235555542 12223333444444566777
Q ss_pred cCCCEEEEEe-CCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520 228 RDEDYVVVCE-SWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 282 (370)
Q Consensus 228 ~dg~~l~v~~-~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 282 (370)
|-...++.+. +.+ |..||+..... ..++... -.++.|+..+++..+++...
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~~P-l~KVi~~---mRTN~IswnPeafnF~~a~E 249 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQASP-LKKVILT---MRTNTICWNPEAFNFVAANE 249 (433)
T ss_pred CCcchheeeeccCCceEEEecccCCc-cceeeee---ccccceecCccccceeeccc
Confidence 7666666655 555 99999864321 1112221 13566777776655555443
No 201
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=94.96 E-value=2.1 Score=38.84 Aligned_cols=62 Identities=11% Similarity=0.091 Sum_probs=38.5
Q ss_pred CCccceEEccCCCEEEEEeCCcEEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520 219 YFANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 282 (370)
Q Consensus 219 ~~p~gi~~~~dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 282 (370)
..|--++++|.|+.+-++--..|..|....++ ..+.+-+-..+-..+|..+++|.+.+++..
T Consensus 332 ~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~--~~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 332 SEPVRLELSPSGDSLAVSFGSDLKVFASEDGK--DYPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred CCceEEEeCCCCcEEEeecCCceEEEEcccCc--cchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 45667899999995555443338777654321 122222223345678999999988777754
No 202
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=94.95 E-value=3.7 Score=39.52 Aligned_cols=138 Identities=15% Similarity=0.110 Sum_probs=80.9
Q ss_pred CCcEEEEecCCeEEEEe-CC---eEEE-EEe---cCCCceeceEEcCCCc-EEEEeCCCceEEEc---CCC-eEEEEeec
Q 017520 89 NGVIYTATRDGWIKRLQ-DG---TWVN-WKF---IDSQTLVGLTSTKEGH-LIICDNANGLHKVS---EDG-VENFLSYV 155 (370)
Q Consensus 89 ~G~l~v~~~~g~I~~~~-~g---~~~~-~~~---~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~---~~g-~~~~~~~~ 155 (370)
..++|++. .|-|..|+ .+ +.-. -.+ ..+... .-...+||+ |.|+.....+-.+| ++- ++.-.
T Consensus 431 trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiR-SckL~pdgrtLivGGeastlsiWDLAapTprikael--- 505 (705)
T KOG0639|consen 431 TRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIR-SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL--- 505 (705)
T ss_pred cceeEecC-CCeEEEeeccCCCCCCccccccccCccccee-eeEecCCCceEEeccccceeeeeeccCCCcchhhhc---
Confidence 45677765 34577777 22 1111 011 112233 445568885 67765544555555 222 22111
Q ss_pred CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE-EEEecCCCCccceEEccCCCEEE
Q 017520 156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVV 234 (370)
Q Consensus 156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~-~~~~~~~~~p~gi~~~~dg~~l~ 234 (370)
... -.....|++.+|-++-|+.- .+|.|..||...+.+ +.+.........|.++.||..||
T Consensus 506 tss-apaCyALa~spDakvcFscc-----------------sdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklW 567 (705)
T KOG0639|consen 506 TSS-APACYALAISPDAKVCFSCC-----------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLW 567 (705)
T ss_pred CCc-chhhhhhhcCCccceeeeec-----------------cCCcEEEEEcccceeeecccCCCCCceeEEecCCCceee
Confidence 110 02456789999999988864 357899999864433 22222233556788999999888
Q ss_pred EEeCCc-EEEEEeCCC
Q 017520 235 VCESWK-CRKYWLKGE 249 (370)
Q Consensus 235 v~~~~~-l~~~~~~~~ 249 (370)
.....+ |+.||+...
T Consensus 568 TGGlDntvRcWDlreg 583 (705)
T KOG0639|consen 568 TGGLDNTVRCWDLREG 583 (705)
T ss_pred cCCCccceeehhhhhh
Confidence 888877 999998654
No 203
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=94.85 E-value=3.4 Score=43.00 Aligned_cols=125 Identities=11% Similarity=0.011 Sum_probs=65.8
Q ss_pred CCcEEEEecCCeEEEEe--CCeEEEEEecCC----------Cc------eeceEEcCCCcEEEEeC----------CCce
Q 017520 89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDS----------QT------LVGLTSTKEGHLIICDN----------ANGL 140 (370)
Q Consensus 89 ~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~----------~p------~~gl~~d~~G~L~v~~~----------~~gi 140 (370)
+++||+++.+|+|+.+| +|+...-....+ .+ .....+. ++.++++.. .+.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~-~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVA-GTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEE-CCEEEEEecccccccccCCCcEE
Confidence 34899999999999999 787543211110 01 1012222 578888743 2337
Q ss_pred EEEc-CCC-eEEEEeec---------CCcc-----cccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEE
Q 017520 141 HKVS-EDG-VENFLSYV---------NGSK-----LRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLK 203 (370)
Q Consensus 141 ~~~~-~~g-~~~~~~~~---------~g~~-----~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~ 203 (370)
+.+| ++| ...-.... .+.. -+....++.|++ |.+|+...+...++-..........-.+.|+.
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 7788 788 33322110 1110 011235788875 67888765422111000000011234678999
Q ss_pred EeCCCCeEEEE
Q 017520 204 YDPSSNITTLV 214 (370)
Q Consensus 204 ~d~~t~~~~~~ 214 (370)
+|.+|++..-.
T Consensus 419 LD~~TGk~~W~ 429 (764)
T TIGR03074 419 LDATTGKERWV 429 (764)
T ss_pred EeCCCCceEEE
Confidence 99999877544
No 204
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=94.79 E-value=1.3 Score=41.23 Aligned_cols=135 Identities=15% Similarity=0.196 Sum_probs=76.6
Q ss_pred ecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC-eEEEEeecCCcccccccceEEcC
Q 017520 96 TRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS 170 (370)
Q Consensus 96 ~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~ 170 (370)
..+..|..|+ +|+...-.......+ ++.+..||.++++... ..|..++ +.| +..-.....|. -+....+-.
T Consensus 151 g~Dn~v~iWnv~tgeali~l~hpd~i~-S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~---k~~Raifl~ 226 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITLDHPDMVY-SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA---KPARAIFLA 226 (472)
T ss_pred cCCceEEEEeccCCceeeecCCCCeEE-EEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC---CcceeEEec
Confidence 3567788888 665433333555667 8999999999997655 4677777 566 33222222332 233445556
Q ss_pred CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceE---EccCCCEEEEEeCCc--EEEEE
Q 017520 171 DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA---LSRDEDYVVVCESWK--CRKYW 245 (370)
Q Consensus 171 ~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~---~~~dg~~l~v~~~~~--l~~~~ 245 (370)
+|.++ ++..++. ....+..+|++.-+.-.....+...+|+. +|+|.+.+|++.-+. |.-|.
T Consensus 227 ~g~i~-tTGfsr~-------------seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 227 SGKIF-TTGFSRM-------------SERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred cCcee-eeccccc-------------cccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 77744 4332222 22334455553211111223344556664 588999999999887 66666
Q ss_pred eCC
Q 017520 246 LKG 248 (370)
Q Consensus 246 ~~~ 248 (370)
+..
T Consensus 293 it~ 295 (472)
T KOG0303|consen 293 ITN 295 (472)
T ss_pred ecC
Confidence 543
No 205
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.78 E-value=1.5 Score=43.85 Aligned_cols=149 Identities=15% Similarity=0.191 Sum_probs=84.9
Q ss_pred CcceEEcCCCcEEEEecCCeEEE-Ee--CCeE-EEEEecCCCceeceEEcCCCcEEEEeCCCceEEE-c-CCC-eEEEEe
Q 017520 81 PEDASMDKNGVIYTATRDGWIKR-LQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKV-S-EDG-VENFLS 153 (370)
Q Consensus 81 P~~i~~d~~G~l~v~~~~g~I~~-~~--~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~-~-~~g-~~~~~~ 153 (370)
-.++++++|+...+....+++.+ |. .|++ +.|......|...+++++.|.|.....-.|.+++ | ..+ .+.-.
T Consensus 65 ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~f- 143 (775)
T KOG0319|consen 65 ITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSF- 143 (775)
T ss_pred hheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEe-
Confidence 45577888775444443444444 44 6653 3333322334438999998866554333455444 4 555 32221
Q ss_pred ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE--EEEecCCCCccceEEccCCC
Q 017520 154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT--TLVADGFYFANGVALSRDED 231 (370)
Q Consensus 154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~--~~~~~~~~~p~gi~~~~dg~ 231 (370)
.|.+ +-+..+.+.++-+.|+--+ +..++.++.||..++.. ..+........++++.+|+.
T Consensus 144 --kG~g-GvVssl~F~~~~~~~lL~s---------------g~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~ 205 (775)
T KOG0319|consen 144 --KGHG-GVVSSLLFHPHWNRWLLAS---------------GATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL 205 (775)
T ss_pred --cCCC-ceEEEEEeCCccchhheee---------------cCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc
Confidence 2211 2456677777654333322 23568888998865433 11122345567899999998
Q ss_pred EEEEEeCCc-EEEEEeCC
Q 017520 232 YVVVCESWK-CRKYWLKG 248 (370)
Q Consensus 232 ~l~v~~~~~-l~~~~~~~ 248 (370)
.++-..++. +..||+..
T Consensus 206 ~~ls~~RDkvi~vwd~~~ 223 (775)
T KOG0319|consen 206 ELLSVGRDKVIIVWDLVQ 223 (775)
T ss_pred eEEEeccCcEEEEeehhh
Confidence 888778777 88888743
No 206
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=94.77 E-value=1.1 Score=42.02 Aligned_cols=151 Identities=13% Similarity=0.108 Sum_probs=89.0
Q ss_pred CCCcCCCcceEEcCCCcEEEEe---cCCeEEEEeCCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcC-CCeE
Q 017520 75 EGSVNHPEDASMDKNGVIYTAT---RDGWIKRLQDGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSE-DGVE 149 (370)
Q Consensus 75 ~~~~~~P~~i~~d~~G~l~v~~---~~g~I~~~~~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~-~g~~ 149 (370)
+|.-.+-.+|++-+||.|..+. .-|+|+=+-+|+ +..+.......+ ++.|+|+|....+....+..++.. -+..
T Consensus 300 EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~-~V~fsPNGy~lATgs~Dnt~kVWDLR~r~ 378 (459)
T KOG0272|consen 300 EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEIL-SVAFSPNGYHLATGSSDNTCKVWDLRMRS 378 (459)
T ss_pred cccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccccee-eEeECCCceEEeecCCCCcEEEeeecccc
Confidence 3444566778999999887654 334454333665 444444556678 999999998877665666666652 1211
Q ss_pred EEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE-EEecCCCCccceEEc
Q 017520 150 NFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADGFYFANGVALS 227 (370)
Q Consensus 150 ~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~-~~~~~~~~p~gi~~~ 227 (370)
.+. ..+.. .+.+.++.++| .|.+.+|.+ -++.+-.|.+.+.+.- .+...-.....+.++
T Consensus 379 ~ly-~ipAH-~nlVS~Vk~~p~~g~fL~Tas-----------------yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis 439 (459)
T KOG0272|consen 379 ELY-TIPAH-SNLVSQVKYSPQEGYFLVTAS-----------------YDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS 439 (459)
T ss_pred cce-ecccc-cchhhheEecccCCeEEEEcc-----------------cCcceeeecCCCcccchhhcCCccceEEEEec
Confidence 111 11221 24677889998 466666644 2355666666655442 223333345678888
Q ss_pred cCCCEEEEEeCCcEEEEE
Q 017520 228 RDEDYVVVCESWKCRKYW 245 (370)
Q Consensus 228 ~dg~~l~v~~~~~l~~~~ 245 (370)
+|+..+.-+...+-+++|
T Consensus 440 ~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 440 PDSQAIATSSFDRTIKLW 457 (459)
T ss_pred cCCceEEEeccCceeeec
Confidence 999855555544444443
No 207
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.76 E-value=3.3 Score=38.34 Aligned_cols=82 Identities=18% Similarity=0.160 Sum_probs=50.0
Q ss_pred ceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-----------EEEEEeCCCCCCceeeeccCC-----C
Q 017520 199 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-----------CRKYWLKGERKGKLETFAENL-----P 262 (370)
Q Consensus 199 g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-----------l~~~~~~~~~~~~~~~~~~~~-----~ 262 (370)
++++.+|.++++..-..+....++ +++++|++.+|++++.- |..||.++-.. ..+..+... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~-~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP-TGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE-EEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc-cceEecCCcchheec
Confidence 699999999888765544444555 77899999999988521 77788665321 122222211 1
Q ss_pred CCCCceeECCCCC-EEEEEec
Q 017520 263 GAPDNINLAPDGT-FWIAIIK 282 (370)
Q Consensus 263 g~p~~i~~d~~G~-lwv~~~~ 282 (370)
.++..+.++.||+ +||-...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~T 115 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFT 115 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEES
T ss_pred ccccceEEccCCcEEEEEccC
Confidence 2466788888886 6666544
No 208
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.68 E-value=1.1 Score=42.40 Aligned_cols=186 Identities=13% Similarity=0.132 Sum_probs=99.9
Q ss_pred CCcceEEcCCC-cEEEEecCCeEEEEe--CCeEEEE--Ee-----------------cCCCceeceEEcCCCcEEEEeCC
Q 017520 80 HPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNW--KF-----------------IDSQTLVGLTSTKEGHLIICDNA 137 (370)
Q Consensus 80 ~P~~i~~d~~G-~l~v~~~~g~I~~~~--~g~~~~~--~~-----------------~~~~p~~gl~~d~~G~L~v~~~~ 137 (370)
.+.++++.+++ ++|-++.+|.|.+++ .|+...+ .. .....+ .+++++||..++....
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil-~~avS~Dgkylatgg~ 222 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEIL-TLAVSSDGKYLATGGR 222 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeE-EEEEcCCCcEEEecCC
Confidence 46778887654 788888999999998 5542211 00 111235 7899999987776544
Q ss_pred CceE-EEc-CCC--eEEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe-E
Q 017520 138 NGLH-KVS-EDG--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-T 211 (370)
Q Consensus 138 ~gi~-~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~-~ 211 (370)
...+ .++ .+. ++.+ .+.. ..+.++++-. ..++|.+.. +..+-.|+.+... +
T Consensus 223 d~~v~Iw~~~t~ehv~~~----~ghr-~~V~~L~fr~gt~~lys~s~------------------Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKVF----KGHR-GAVSSLAFRKGTSELYSASA------------------DRSVKVWSIDQLSYV 279 (479)
T ss_pred CceEEEecCcccchhhcc----cccc-cceeeeeeecCccceeeeec------------------CCceEEEehhHhHHH
Confidence 4444 444 444 3332 2221 2455666632 235777643 2345555543221 1
Q ss_pred EEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHh
Q 017520 212 TLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKI 290 (370)
Q Consensus 212 ~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~ 290 (370)
+.+........+|.....++.+-|....+ +..|.+... +...|. ...+.++-+++-.+-++..|...|...+|.+
T Consensus 280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee---sqlifr-g~~~sidcv~~In~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE---SQLIFR-GGEGSIDCVAFINDEHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHHhCCccceeeechhcccceEEeccccceeEEEecccc---ceeeee-CCCCCeeeEEEecccceeeccCCceEEEeee
Confidence 22222222233444444566566665666 555555321 222333 3455677788766677777776665444444
Q ss_pred hhc
Q 017520 291 LNS 293 (370)
Q Consensus 291 ~~~ 293 (370)
+-+
T Consensus 356 ~KK 358 (479)
T KOG0299|consen 356 LKK 358 (479)
T ss_pred ccc
Confidence 333
No 209
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=94.61 E-value=3.7 Score=37.89 Aligned_cols=143 Identities=12% Similarity=0.025 Sum_probs=80.8
Q ss_pred ceEEcCCCcEEEEe--cCCeEEEEe--CCeEE-EEEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCC--eEEEEe
Q 017520 83 DASMDKNGVIYTAT--RDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLS 153 (370)
Q Consensus 83 ~i~~d~~G~l~v~~--~~g~I~~~~--~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g--~~~~~~ 153 (370)
+++.+|+ +-|+++ .+..=+.|+ +|.+. .......... .+.|+.||.+.++....|.+.+. .+| ...+..
T Consensus 69 avsl~P~-~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt-~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~ 146 (399)
T KOG0296|consen 69 AVSLHPN-NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVT-CCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ 146 (399)
T ss_pred EEEeCCC-CceEEecCCCceEEEEEccCCcceeEecCCCCceE-EEEEccCceEEEecCCCccEEEEEcccCceEEEeec
Confidence 3555664 344444 444444555 56522 2223344566 88999999888765445655554 445 222221
Q ss_pred ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCC-CeEEEEecCCCCccceEEccCCCE
Q 017520 154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLVADGFYFANGVALSRDEDY 232 (370)
Q Consensus 154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-~~~~~~~~~~~~p~gi~~~~dg~~ 232 (370)
.. ..+.=|...|.+.+.++-+ .+|.+|.|.... +..+++...-..-+.=.+.|||+.
T Consensus 147 e~-----~dieWl~WHp~a~illAG~-----------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr 204 (399)
T KOG0296|consen 147 EV-----EDIEWLKWHPRAHILLAGS-----------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKR 204 (399)
T ss_pred cc-----CceEEEEecccccEEEeec-----------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCce
Confidence 11 1222245567777666633 457888887654 444444332222233467899998
Q ss_pred EEEEeCCc-EEEEEeCCC
Q 017520 233 VVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 233 l~v~~~~~-l~~~~~~~~ 249 (370)
+......+ |.+|++++.
T Consensus 205 ~~tgy~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 205 ILTGYDDGTIIVWNPKTG 222 (399)
T ss_pred EEEEecCceEEEEecCCC
Confidence 88888877 888987654
No 210
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.61 E-value=1.3 Score=45.74 Aligned_cols=153 Identities=14% Similarity=0.169 Sum_probs=89.2
Q ss_pred CCcCCCcceEEc-CCCcEEEEe--cCCeEEEEe--CCe-EEEEEecCCCceeceEEc------CCCcEEEEeCCCceEEE
Q 017520 76 GSVNHPEDASMD-KNGVIYTAT--RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTST------KEGHLIICDNANGLHKV 143 (370)
Q Consensus 76 ~~~~~P~~i~~d-~~G~l~v~~--~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d------~~G~L~v~~~~~gi~~~ 143 (370)
|....|..+... .+.++..-+ ....||++| .|+ ++.|......|...++-+ .....++|-..++++++
T Consensus 478 g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfri 557 (794)
T PF08553_consen 478 GKNFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRI 557 (794)
T ss_pred CcccCcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEe
Confidence 333456665554 355666665 346799999 676 455644332222133322 13367888777899999
Q ss_pred c-C-CCeEEEEeecCC-cccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCC
Q 017520 144 S-E-DGVENFLSYVNG-SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 220 (370)
Q Consensus 144 ~-~-~g~~~~~~~~~g-~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~ 220 (370)
| + .|-+.+...... ...+....++.+.+|+|-|++. .|.|..||.-+......+.++..
T Consensus 558 DpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~------------------~G~IRLyd~~g~~AKT~lp~lG~ 619 (794)
T PF08553_consen 558 DPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSN------------------KGDIRLYDRLGKRAKTALPGLGD 619 (794)
T ss_pred ccCCCCCceeeccccccccCCCceEEEecCCceEEEEeC------------------CCcEEeecccchhhhhcCCCCCC
Confidence 9 3 341111111000 1112345678889999998864 46777778654444455566655
Q ss_pred c-cceEEccCCCEEEEEeCCcEEEEEe
Q 017520 221 A-NGVALSRDEDYVVVCESWKCRKYWL 246 (370)
Q Consensus 221 p-~gi~~~~dg~~l~v~~~~~l~~~~~ 246 (370)
| .||.++.||++++.+...-|..++.
T Consensus 620 pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 620 PIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred CeeEEEecCCCcEEEEeecceEEEEEE
Confidence 5 6899999999655554444555553
No 211
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.60 E-value=0.88 Score=42.85 Aligned_cols=98 Identities=21% Similarity=0.384 Sum_probs=52.3
Q ss_pred CcceEE--c-CCCcEE--EEecCCeEEEEe-----CCeE----EEEEecCCCceeceEEc-CCCcEEEEeCCCceEEEc-
Q 017520 81 PEDASM--D-KNGVIY--TATRDGWIKRLQ-----DGTW----VNWKFIDSQTLVGLTST-KEGHLIICDNANGLHKVS- 144 (370)
Q Consensus 81 P~~i~~--d-~~G~l~--v~~~~g~I~~~~-----~g~~----~~~~~~~~~p~~gl~~d-~~G~L~v~~~~~gi~~~~- 144 (370)
|.++|. + .+|.+| +...+|.+.+|. +|.+ .+-.....++- |+++| ..|.||+++...||++++
T Consensus 158 ~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~E-GCVVDDe~g~LYvgEE~~GIW~y~A 236 (381)
T PF02333_consen 158 PYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPE-GCVVDDETGRLYVGEEDVGIWRYDA 236 (381)
T ss_dssp EEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EE-EEEEETTTTEEEEEETTTEEEEEES
T ss_pred ceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcce-EEEEecccCCEEEecCccEEEEEec
Confidence 455665 3 356555 455778777665 3432 11123345677 88887 466899999999999999
Q ss_pred -CCC--eEEEEeecCCccc-ccccceEE--cCC--CcEEEEeC
Q 017520 145 -EDG--VENFLSYVNGSKL-RFANDVVE--ASD--GSLYFTVS 179 (370)
Q Consensus 145 -~~g--~~~~~~~~~g~~~-~~~~~l~~--d~~--G~l~v~d~ 179 (370)
+++ ...++....+..+ ..+.+|++ ..+ |.|.+++.
T Consensus 237 ep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ 279 (381)
T PF02333_consen 237 EPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ 279 (381)
T ss_dssp SCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG
T ss_pred CCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC
Confidence 333 3333333233222 24555655 333 45666654
No 212
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.57 E-value=4 Score=39.00 Aligned_cols=169 Identities=12% Similarity=0.161 Sum_probs=96.1
Q ss_pred CCcEEEEecCCeEEEEe--CCeEEEEE--ecCCCceeceEEcC-CCcEEEEeCCCceEEEcCCC-e-EEEEeecCCcccc
Q 017520 89 NGVIYTATRDGWIKRLQ--DGTWVNWK--FIDSQTLVGLTSTK-EGHLIICDNANGLHKVSEDG-V-ENFLSYVNGSKLR 161 (370)
Q Consensus 89 ~G~l~v~~~~g~I~~~~--~g~~~~~~--~~~~~p~~gl~~d~-~G~L~v~~~~~gi~~~~~~g-~-~~~~~~~~g~~~~ 161 (370)
++.+++...|+++.++. +.....+. ....... +..+.+ ++.+.++..+.|..++.... . ..+.....|.
T Consensus 122 d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR-~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~--- 197 (487)
T KOG0310|consen 122 DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR-CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGC--- 197 (487)
T ss_pred CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE-eeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCC---
Confidence 45666655666677765 33322211 1222344 444443 45677776666766665322 1 2222222343
Q ss_pred cccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE--ecCCCCccceEEccCCCEEEEEeCC
Q 017520 162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--ADGFYFANGVALSRDEDYVVVCESW 239 (370)
Q Consensus 162 ~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~--~~~~~~p~gi~~~~dg~~l~v~~~~ 239 (370)
-+..+..-|.|.+.++.++ ..+-.||.-+|..... ....+....+.+..++..|+-+.-.
T Consensus 198 pVe~vl~lpsgs~iasAgG------------------n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD 259 (487)
T KOG0310|consen 198 PVESVLALPSGSLIASAGG------------------NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD 259 (487)
T ss_pred ceeeEEEcCCCCEEEEcCC------------------CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccc
Confidence 3456677788888888543 4677888764433221 2234456788898999888888888
Q ss_pred c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC-CEEEEEecC
Q 017520 240 K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKL 283 (370)
Q Consensus 240 ~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~ 283 (370)
+ +.+|+...-+. ...+ ..++-.=.+++.+++ ++++|...+
T Consensus 260 ~~VKVfd~t~~Kv--v~s~--~~~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 260 RHVKVFDTTNYKV--VHSW--KYPGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred cceEEEEccceEE--EEee--ecccceeeEEecCCCceEEEecccc
Confidence 8 88898543221 1111 223323346676655 799998776
No 213
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=94.56 E-value=2.1 Score=38.47 Aligned_cols=140 Identities=10% Similarity=0.076 Sum_probs=81.9
Q ss_pred cceEEcC-CCcEEEEecCCeEEEEe-CC-eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecC
Q 017520 82 EDASMDK-NGVIYTATRDGWIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVN 156 (370)
Q Consensus 82 ~~i~~d~-~G~l~v~~~~g~I~~~~-~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~ 156 (370)
.+|-+++ .++|.+++++|.+..++ .. ...... ..+.|++.-+|.++-.+|+++.++.|.++| .++ ...+....
T Consensus 17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~- 94 (323)
T KOG1036|consen 17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHD- 94 (323)
T ss_pred eeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCC-
Confidence 3455554 57899999999998888 22 222111 223454477887777899998888899998 444 33332211
Q ss_pred CcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccc-eEEccCCCEEEE
Q 017520 157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG-VALSRDEDYVVV 235 (370)
Q Consensus 157 g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~g-i~~~~dg~~l~v 235 (370)
..+..|.....-...|+.+ .+..|-.||+..... ...+..++- -+.+-.++.|+|
T Consensus 95 ----~~i~ci~~~~~~~~vIsgs-----------------WD~~ik~wD~R~~~~---~~~~d~~kkVy~~~v~g~~LvV 150 (323)
T KOG1036|consen 95 ----EGIRCIEYSYEVGCVISGS-----------------WDKTIKFWDPRNKVV---VGTFDQGKKVYCMDVSGNRLVV 150 (323)
T ss_pred ----CceEEEEeeccCCeEEEcc-----------------cCccEEEEecccccc---ccccccCceEEEEeccCCEEEE
Confidence 1233344444334445533 456788888864211 111222222 244556677888
Q ss_pred EeCCc-EEEEEeC
Q 017520 236 CESWK-CRKYWLK 247 (370)
Q Consensus 236 ~~~~~-l~~~~~~ 247 (370)
+..++ +..||+.
T Consensus 151 g~~~r~v~iyDLR 163 (323)
T KOG1036|consen 151 GTSDRKVLIYDLR 163 (323)
T ss_pred eecCceEEEEEcc
Confidence 77777 8899875
No 214
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=94.56 E-value=4.5 Score=38.61 Aligned_cols=160 Identities=13% Similarity=0.065 Sum_probs=91.2
Q ss_pred ecCCeEEEEe---CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcC--C-C-eEEEEeecCCcccccccceEE
Q 017520 96 TRDGWIKRLQ---DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSE--D-G-VENFLSYVNGSKLRFANDVVE 168 (370)
Q Consensus 96 ~~~g~I~~~~---~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~--~-g-~~~~~~~~~g~~~~~~~~l~~ 168 (370)
+.+|.|+.+. +.-..++....+... +|.+++.|.|+....+.+-+++.. + + ..-+... ...+..+-.
T Consensus 336 ~td~~i~V~kv~~~~P~~t~~GH~g~V~-alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H-----skei~t~~w 409 (524)
T KOG0273|consen 336 STDGCIHVCKVGEDRPVKTFIGHHGEVN-ALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH-----SKEIYTIKW 409 (524)
T ss_pred CCCceEEEEEecCCCcceeeecccCceE-EEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh-----ccceeeEee
Confidence 3677666665 344556656667778 999999999998877777666651 1 1 2111000 001111222
Q ss_pred cC---------CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEccCCCEEEEEeC
Q 017520 169 AS---------DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCES 238 (370)
Q Consensus 169 d~---------~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~dg~~l~v~~~ 238 (370)
.| +|...++.+ .++.|..||...+.....+.. ......++++++|+.+.-.+.
T Consensus 410 sp~g~v~~n~~~~~~l~sas-----------------~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~ 472 (524)
T KOG0273|consen 410 SPTGPVTSNPNMNLMLASAS-----------------FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL 472 (524)
T ss_pred cCCCCccCCCcCCceEEEee-----------------cCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC
Confidence 22 122222221 456788888877765544433 334468999999997777777
Q ss_pred Cc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520 239 WK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 282 (370)
Q Consensus 239 ~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 282 (370)
++ |..++.+..+ .++.+. ..+....++...+|+...++..
T Consensus 473 dg~V~iws~~~~~--l~~s~~--~~~~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 473 DGCVHIWSTKTGK--LVKSYQ--GTGGIFELCWNAAGDKLGACAS 513 (524)
T ss_pred CCeeEeccccchh--eeEeec--CCCeEEEEEEcCCCCEEEEEec
Confidence 77 6555544322 123332 1223455788889987777654
No 215
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=94.54 E-value=1.6 Score=39.66 Aligned_cols=145 Identities=9% Similarity=0.019 Sum_probs=79.9
Q ss_pred cCCCcEEEEe-cCCeEEEEe--CCeEEEEE----e--cCCCceeceEEcCCCcEEEEeCCCceEEEc--CCC--eEEEEe
Q 017520 87 DKNGVIYTAT-RDGWIKRLQ--DGTWVNWK----F--IDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLS 153 (370)
Q Consensus 87 d~~G~l~v~~-~~g~I~~~~--~g~~~~~~----~--~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g--~~~~~~ 153 (370)
+++-.+|..+ .+.-|..|+ +|+.+--. . .-...+ ++.|++||.-.++....-|..++ +.| ..+...
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh-sL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH-SLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe-eEEecCCCCeEeecccceEEEeeccCCCCCCcchhh
Confidence 4566778666 566688888 78754321 1 112356 89999999755554455566666 455 222221
Q ss_pred ecCCc--ccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCC
Q 017520 154 YVNGS--KLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 230 (370)
Q Consensus 154 ~~~g~--~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg 230 (370)
...+. ...-+..+++.|-. .++..-+ |+ ..-+||+.|.. +-...+........-+.+.+||
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gs---Y~------------q~~giy~~~~~-~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGS---YG------------QRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeec---cc------------ceeeeEecCCC-CceeeecccCCCeeeEEeccCc
Confidence 11111 11233456666643 2332211 11 11245555432 3333333333445567899999
Q ss_pred CEEEEEeCCc--EEEEEeCC
Q 017520 231 DYVVVCESWK--CRKYWLKG 248 (370)
Q Consensus 231 ~~l~v~~~~~--l~~~~~~~ 248 (370)
+.+|...+.. |.++|+.-
T Consensus 263 n~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred CeecccccCCCeEEEEeehh
Confidence 9999988766 99999753
No 216
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.52 E-value=6.1 Score=39.98 Aligned_cols=148 Identities=14% Similarity=0.085 Sum_probs=79.7
Q ss_pred CCCcceEEcCCCcE--EEEe-------cCCeEEEEe-CCeEEEEEecCCCceeceEEcCCC-cEEEEeCCCceEEEc-C-
Q 017520 79 NHPEDASMDKNGVI--YTAT-------RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNANGLHKVS-E- 145 (370)
Q Consensus 79 ~~P~~i~~d~~G~l--~v~~-------~~g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~~~~~gi~~~~-~- 145 (370)
..+.+.++.++|.- |+.+ ....|+..+ ++..+.+.. ...-. ...+++|| .||+......+.++. .
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t-~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLT-RPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCC-CceECCCCCceEEEecCcceEEEeccC
Confidence 45677888888853 4442 123577766 554444432 22223 56789995 588875343344444 2
Q ss_pred -CC-eEEEEeecCCcc----cccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEE---EeCCCCeEEE--
Q 017520 146 -DG-VENFLSYVNGSK----LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLK---YDPSSNITTL-- 213 (370)
Q Consensus 146 -~g-~~~~~~~~~g~~----~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~---~d~~t~~~~~-- 213 (370)
++ +..+ ....+.. -..+..+.+++||. +.+... ++|+. ...+.+..+.
T Consensus 428 ~~gql~~~-~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~-------------------g~v~Va~Vvr~~~G~~~l~~ 487 (591)
T PRK13616 428 ATGQLART-PVDASAVASRVPGPISELQLSRDGVRAAMIIG-------------------GKVYLAVVEQTEDGQYALTN 487 (591)
T ss_pred CCceEEEE-eccCchhhhccCCCcCeEEECCCCCEEEEEEC-------------------CEEEEEEEEeCCCCceeecc
Confidence 22 2211 1101110 13578899999994 555432 23333 2223343222
Q ss_pred ---EecCCCC-ccceEEccCCCEEEEEeCCc---EEEEEeCCC
Q 017520 214 ---VADGFYF-ANGVALSRDEDYVVVCESWK---CRKYWLKGE 249 (370)
Q Consensus 214 ---~~~~~~~-p~gi~~~~dg~~l~v~~~~~---l~~~~~~~~ 249 (370)
+...+.. +..+.|..++. |++..... ++++.++|.
T Consensus 488 ~~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~ 529 (591)
T PRK13616 488 PREVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGS 529 (591)
T ss_pred cEEeecccCCccccceEecCCE-EEEEecCCCCceEEEecCCc
Confidence 3344444 47788988887 66665543 888998876
No 217
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=94.49 E-value=6.5 Score=40.23 Aligned_cols=182 Identities=11% Similarity=0.148 Sum_probs=99.4
Q ss_pred CCceeceEEcCCCcE-EEEeCCCceEEEc-CCC-e-EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecc
Q 017520 117 SQTLVGLTSTKEGHL-IICDNANGLHKVS-EDG-V-ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDI 192 (370)
Q Consensus 117 ~~p~~gl~~d~~G~L-~v~~~~~gi~~~~-~~g-~-~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~ 192 (370)
.... +++++.=|+. +|+...+-|-+++ ..| . ..+... + ..-..+.++++|.-+++.++...
T Consensus 449 ~~~~-av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~-~-ah~~~V~gla~D~~n~~~vsa~~------------ 513 (910)
T KOG1539|consen 449 INAT-AVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS-P-AHKGEVTGLAVDGTNRLLVSAGA------------ 513 (910)
T ss_pred cceE-EEEEeccCceEEEeccCCeEEEEEcccCeeecccccC-c-cccCceeEEEecCCCceEEEccC------------
Confidence 3455 7888888885 5555445588888 777 3 333211 1 11246788999998988888652
Q ss_pred cccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeE
Q 017520 193 LEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINL 270 (370)
Q Consensus 193 ~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~ 270 (370)
.|-+-.||-+.+....-..-...+.++..+.... ++....+. |..||..+.+. .+.|- ...+....+++
T Consensus 514 -----~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kv--vR~f~-gh~nritd~~F 584 (910)
T KOG1539|consen 514 -----DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKV--VREFW-GHGNRITDMTF 584 (910)
T ss_pred -----cceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhh--hHHhh-ccccceeeeEe
Confidence 3445556665443222222234566777776665 44433333 89999755432 22232 34455778999
Q ss_pred CCCCCEEEEE-ecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeC
Q 017520 271 APDGTFWIAI-IKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD 335 (370)
Q Consensus 271 d~~G~lwv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~ 335 (370)
++||+..+.. ..+....+|.... ..+..+ .....-.-+.++|+|+.+.+-|.
T Consensus 585 S~DgrWlisasmD~tIr~wDlpt~------------~lID~~-~vd~~~~sls~SPngD~LAT~Hv 637 (910)
T KOG1539|consen 585 SPDGRWLISASMDSTIRTWDLPTG------------TLIDGL-LVDSPCTSLSFSPNGDFLATVHV 637 (910)
T ss_pred CCCCcEEEEeecCCcEEEEeccCc------------ceeeeE-ecCCcceeeEECCCCCEEEEEEe
Confidence 9999754443 3343333332110 001100 01111234677788888777665
No 218
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.44 E-value=3.9 Score=38.46 Aligned_cols=82 Identities=13% Similarity=0.237 Sum_probs=55.4
Q ss_pred CCceEEEEeCCCCeEEEEecCCCCc-cceEEccCCCEEEEEeCCc------EEEEEeC-CCCCCceeeeccCCCCCCC-c
Q 017520 197 PHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVVVCESWK------CRKYWLK-GERKGKLETFAENLPGAPD-N 267 (370)
Q Consensus 197 ~~g~l~~~d~~t~~~~~~~~~~~~p-~gi~~~~dg~~l~v~~~~~------l~~~~~~-~~~~~~~~~~~~~~~g~p~-~ 267 (370)
+-..|+.++.+++..+.+..+-... .-+.++.+++.+|+..+.. |++++++ + +..+++... .... .
T Consensus 258 G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~--~~~~~~ 332 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCE--DGDHYS 332 (353)
T ss_dssp SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTT--SSTTEE
T ss_pred CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCC--CCCceE
Confidence 4468999999988766555444444 3467899999999888753 8999887 4 344554322 2233 6
Q ss_pred eeECCCCCEEEEEecC
Q 017520 268 INLAPDGTFWIAIIKL 283 (370)
Q Consensus 268 i~~d~~G~lwv~~~~~ 283 (370)
+.++++|++++-...+
T Consensus 333 ~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 333 ASFSPDGKYYVDTYSG 348 (353)
T ss_dssp EEE-TTSSEEEEEEES
T ss_pred EEECCCCCEEEEEEcC
Confidence 8899999999887665
No 219
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=94.40 E-value=0.046 Score=29.37 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=14.2
Q ss_pred CCcceEEcCCCcEEEEec
Q 017520 80 HPEDASMDKNGVIYTATR 97 (370)
Q Consensus 80 ~P~~i~~d~~G~l~v~~~ 97 (370)
...+|+.|++|+||+|+.
T Consensus 6 ~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 6 NIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp CEEEEEE-TTSCEEEEET
T ss_pred eEEEEEEcCCcCEEEEeC
Confidence 456789999999999984
No 220
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=94.26 E-value=1.7 Score=41.75 Aligned_cols=80 Identities=14% Similarity=0.257 Sum_probs=48.2
Q ss_pred CCceEEEEeCCCCeEEEEe-cCCCCc-cceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECC
Q 017520 197 PHGQLLKYDPSSNITTLVA-DGFYFA-NGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAP 272 (370)
Q Consensus 197 ~~g~l~~~d~~t~~~~~~~-~~~~~p-~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~ 272 (370)
..|.|..||..+.....-+ .....| .||+++|.+..|+++--.. |+.||....+.. ..+....| -..+++.+
T Consensus 185 d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~--~~l~y~~P--lstvaf~~ 260 (673)
T KOG4378|consen 185 DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST--DRLTYSHP--LSTVAFSE 260 (673)
T ss_pred cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc--ceeeecCC--cceeeecC
Confidence 4578888987633221111 112233 6999999888777776544 999997644322 22222222 35688999
Q ss_pred CCCEEEEE
Q 017520 273 DGTFWIAI 280 (370)
Q Consensus 273 ~G~lwv~~ 280 (370)
+|.+.++-
T Consensus 261 ~G~~L~aG 268 (673)
T KOG4378|consen 261 CGTYLCAG 268 (673)
T ss_pred CceEEEee
Confidence 99766554
No 221
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.13 E-value=4.4 Score=36.81 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=24.2
Q ss_pred CCCcCCCcceEEcCCCcEEEEe-cCCeEEEEe
Q 017520 75 EGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ 105 (370)
Q Consensus 75 ~~~~~~P~~i~~d~~G~l~v~~-~~g~I~~~~ 105 (370)
+..+.+|.+|++.+.|.+||++ ..+....++
T Consensus 19 Dp~L~N~WGia~~p~~~~WVadngT~~~TlYd 50 (336)
T TIGR03118 19 DPGLRNAWGLSYRPGGPFWVANTGTGTATLYV 50 (336)
T ss_pred CccccccceeEecCCCCEEEecCCcceEEeec
Confidence 4457899999999999999998 445455555
No 222
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.06 E-value=2.2 Score=44.42 Aligned_cols=97 Identities=12% Similarity=0.044 Sum_probs=62.4
Q ss_pred CCcceEEcCCCcEEEEe-cCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCC---C-eEEE
Q 017520 80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSED---G-VENF 151 (370)
Q Consensus 80 ~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~---g-~~~~ 151 (370)
.--+++.++++.+.+.- -++.|..|+ +.+ .+++....+.+- |+.+||-|..+....+.+.+++.++ | .+.+
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK-Gvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~I 209 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK-GVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSI 209 (942)
T ss_pred ccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc-ceEECCccCeeeeecCCceEEEEEcccceeeEee
Confidence 34556777877666554 788899999 333 445555666777 9999999998888777776666632 3 2333
Q ss_pred EeecCCc-ccccccceEEcCCCcEEEE
Q 017520 152 LSYVNGS-KLRFANDVVEASDGSLYFT 177 (370)
Q Consensus 152 ~~~~~g~-~~~~~~~l~~d~~G~l~v~ 177 (370)
...++.. ...+...+..+|||....+
T Consensus 210 t~pf~~~~~~T~f~RlSWSPDG~~las 236 (942)
T KOG0973|consen 210 TKPFEESPLTTFFLRLSWSPDGHHLAS 236 (942)
T ss_pred ccchhhCCCcceeeecccCCCcCeecc
Confidence 2222211 1235556788899986655
No 223
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=94.04 E-value=4.1 Score=36.16 Aligned_cols=115 Identities=14% Similarity=0.151 Sum_probs=67.7
Q ss_pred CCCceeceEEcCC-CcEEEEeCCCc-eEEEcCC-C-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceec
Q 017520 116 DSQTLVGLTSTKE-GHLIICDNANG-LHKVSED-G-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD 191 (370)
Q Consensus 116 ~~~p~~gl~~d~~-G~L~v~~~~~g-i~~~~~~-g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~ 191 (370)
.++.. .+++.|. |.++....... |...+.. + .-.......+..-+.+..++..|.|+ |++..+
T Consensus 14 ~~r~W-~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aS----------- 80 (312)
T KOG0645|consen 14 KDRVW-SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASAS----------- 80 (312)
T ss_pred CCcEE-EEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEee-----------
Confidence 34566 7888876 76555443433 4444432 3 11111222233335788999999999 455443
Q ss_pred ccccCCCceEEEEeCCCCeEEEEe---cCCCCccceEEccCCCEEEEEeCCc-EEEEEeCC
Q 017520 192 ILEGKPHGQLLKYDPSSNITTLVA---DGFYFANGVALSRDEDYVVVCESWK-CRKYWLKG 248 (370)
Q Consensus 192 ~~~~~~~g~l~~~d~~t~~~~~~~---~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~ 248 (370)
.+..+..+....+.++.+. ..-.....++++.+|+.|-.+.++. |+.+..+.
T Consensus 81 -----FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de 136 (312)
T KOG0645|consen 81 -----FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE 136 (312)
T ss_pred -----ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC
Confidence 2344555544445555432 2234456899999999888888887 77777653
No 224
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.85 E-value=1.6 Score=42.23 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=64.6
Q ss_pred ceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC
Q 017520 199 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 274 (370)
Q Consensus 199 g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G 274 (370)
..++++|.++++...+..-........++|||+.+.++.... |+.+|+.+.. ...+ .+..+.-..=...+||
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~---~~~L-t~~~gi~~~Ps~spdG 293 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN---LPRL-TNGFGINTSPSWSPDG 293 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc---ceec-ccCCccccCccCCCCC
Confidence 568999998887776665333344568999999888876544 9999987753 2222 2333333334467788
Q ss_pred C--EEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCC
Q 017520 275 T--FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPT 337 (370)
Q Consensus 275 ~--lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~ 337 (370)
. +|++..+++ ..|+.++.+|+..+.+....
T Consensus 294 ~~ivf~Sdr~G~---------------------------------p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 294 SKIVFTSDRGGR---------------------------------PQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred CEEEEEeCCCCC---------------------------------cceEEECCCCCceeEeeccC
Confidence 5 444444442 24788888887766665433
No 225
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.82 E-value=5.1 Score=38.34 Aligned_cols=61 Identities=23% Similarity=0.434 Sum_probs=32.5
Q ss_pred ccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCce--eeecc--------------CCCCCCCceeECCCC-CEEEEEe
Q 017520 221 ANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKL--ETFAE--------------NLPGAPDNINLAPDG-TFWIAII 281 (370)
Q Consensus 221 p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~--~~~~~--------------~~~g~p~~i~~d~~G-~lwv~~~ 281 (370)
+.-|.+|-|.++||+++... |+.||++.+..-.. +++.. .+.|.|.-+.++.|| ++|+++.
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 46688999999999999876 99999987631111 11111 233457778899999 5999864
No 226
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=93.79 E-value=0.73 Score=41.48 Aligned_cols=146 Identities=16% Similarity=0.213 Sum_probs=78.8
Q ss_pred cceEEcCCCcEEEE-ecCCeEEEEe-CC-----eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEE-EcCCCeEEEEe
Q 017520 82 EDASMDKNGVIYTA-TRDGWIKRLQ-DG-----TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHK-VSEDGVENFLS 153 (370)
Q Consensus 82 ~~i~~d~~G~l~v~-~~~g~I~~~~-~g-----~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~-~~~~g~~~~~~ 153 (370)
.++.+-+...|.++ +.++.|.-|| .. .++.+.+ ..... +|.+.|.|........+-+.+ +|-+-.+-++.
T Consensus 176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd-~~~vr-siSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD-TEPVR-SISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhc-cceee-eEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 34555554445543 4677777676 21 1222211 22234 899999998555444554444 33111233333
Q ss_pred ecCC-cccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE---ecCCCCccceEEccC
Q 017520 154 YVNG-SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV---ADGFYFANGVALSRD 229 (370)
Q Consensus 154 ~~~g-~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~---~~~~~~p~gi~~~~d 229 (370)
..+. ..-..++++-..+.|++|++.+ .+|.|-.||.-++++... +.+....-...|..+
T Consensus 254 anPd~qht~ai~~V~Ys~t~~lYvTaS-----------------kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn 316 (430)
T KOG0640|consen 254 ANPDDQHTGAITQVRYSSTGSLYVTAS-----------------KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN 316 (430)
T ss_pred cCcccccccceeEEEecCCccEEEEec-----------------cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC
Confidence 2222 2234678888999999999965 456777777655544221 122223334567788
Q ss_pred CCEEEEEeCCc-EEEEEe
Q 017520 230 EDYVVVCESWK-CRKYWL 246 (370)
Q Consensus 230 g~~l~v~~~~~-l~~~~~ 246 (370)
|++++-+.... +..|.+
T Consensus 317 ~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 317 GKYILSSGKDSTVKLWEI 334 (430)
T ss_pred CeEEeecCCcceeeeeee
Confidence 88666555555 333443
No 227
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=93.78 E-value=0.099 Score=28.03 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=16.5
Q ss_pred ccccccceEEcCCCcEEEEeC
Q 017520 159 KLRFANDVVEASDGSLYFTVS 179 (370)
Q Consensus 159 ~~~~~~~l~~d~~G~l~v~d~ 179 (370)
+.+.+.+|..|++|+|||++.
T Consensus 3 ~~n~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 3 PNNNIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp SSSCEEEEEE-TTSCEEEEET
T ss_pred CCCeEEEEEEcCCcCEEEEeC
Confidence 345788999999999999963
No 228
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.63 E-value=10 Score=39.35 Aligned_cols=148 Identities=16% Similarity=0.174 Sum_probs=89.8
Q ss_pred CCCcceEEcCCCcEEE--EecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEE-Ec-CCC--eE
Q 017520 79 NHPEDASMDKNGVIYT--ATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHK-VS-EDG--VE 149 (370)
Q Consensus 79 ~~P~~i~~d~~G~l~v--~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~-~~-~~g--~~ 149 (370)
....++++-|. +-|+ +-.+|.|.-|| =|. +..|....|... |+.|.+.+-|+|+..+.-..+ ++ ++. +-
T Consensus 10 sRvKglsFHP~-rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVR-gv~FH~~qplFVSGGDDykIkVWnYk~rrclf 87 (1202)
T KOG0292|consen 10 SRVKGLSFHPK-RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVR-GVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF 87 (1202)
T ss_pred ccccceecCCC-CCEEEEeecCceeeeehhhhhhHHhhhhccCCccc-eeeecCCCCeEEecCCccEEEEEecccceehh
Confidence 34556777765 3554 33788888888 233 556667778778 999999999999865543333 33 322 11
Q ss_pred EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCC-CccceEEcc
Q 017520 150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-FANGVALSR 228 (370)
Q Consensus 150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~-~p~gi~~~~ 228 (370)
.+... +.++..+.+.+. .=||-..| .+.+|..||-++.+....+++.. ......|.|
T Consensus 88 tL~GH-----lDYVRt~~FHhe-yPWIlSAS----------------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp 145 (1202)
T KOG0292|consen 88 TLLGH-----LDYVRTVFFHHE-YPWILSAS----------------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP 145 (1202)
T ss_pred hhccc-----cceeEEeeccCC-CceEEEcc----------------CCCeEEEEeccCCceEEEEecCceEEEeeccCC
Confidence 11111 234555555443 44665544 44667777777666655555432 344556788
Q ss_pred CCCEEEEEeCCc--EEEEEeCCCCC
Q 017520 229 DEDYVVVCESWK--CRKYWLKGERK 251 (370)
Q Consensus 229 dg~~l~v~~~~~--l~~~~~~~~~~ 251 (370)
..+ ++|+.+-. |++||++|-+.
T Consensus 146 tED-lIVSaSLDQTVRVWDisGLRk 169 (1202)
T KOG0292|consen 146 TED-LIVSASLDQTVRVWDISGLRK 169 (1202)
T ss_pred ccc-eEEEecccceEEEEeecchhc
Confidence 777 66665544 99999987543
No 229
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=93.62 E-value=4.3 Score=40.57 Aligned_cols=141 Identities=13% Similarity=0.210 Sum_probs=75.2
Q ss_pred CCcceEEcCCCcEEEEecCCeEEEEeCCeEE-EEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC--eEEEEeecC
Q 017520 80 HPEDASMDKNGVIYTATRDGWIKRLQDGTWV-NWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVN 156 (370)
Q Consensus 80 ~P~~i~~d~~G~l~v~~~~g~I~~~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~~~~~~~ 156 (370)
+-.++..+.++.+..|++|..+.+|..|+.. .+........ .++.-+++ .|++.......++...| ++.+...
T Consensus 103 nVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVW-Av~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gH-- 178 (745)
T KOG0301|consen 103 NVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVW-AVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGH-- 178 (745)
T ss_pred ceeeeecCCcCceEecccccceEEecchhhhcccCCcchhee-eeeecCCC-cEEeccCcceeeeccCCchhhhhccc--
Confidence 4555666677777777777666666533211 1222222345 56666666 66655455666666545 4444221
Q ss_pred CcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEE
Q 017520 157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC 236 (370)
Q Consensus 157 g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~ 236 (370)
...+.++++-+++.+. +.+ .+|.|..++.++..+......-.+...+....+++.+.-+
T Consensus 179 ---tD~VRgL~vl~~~~fl-Scs-----------------NDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~ 237 (745)
T KOG0301|consen 179 ---TDCVRGLAVLDDSHFL-SCS-----------------NDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVST 237 (745)
T ss_pred ---hhheeeeEEecCCCeE-eec-----------------CCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEe
Confidence 1356778887776643 322 3466777777544444443333444555544444535555
Q ss_pred eCCcEEEEE
Q 017520 237 ESWKCRKYW 245 (370)
Q Consensus 237 ~~~~l~~~~ 245 (370)
..++-.|+|
T Consensus 238 gEDrtlriW 246 (745)
T KOG0301|consen 238 GEDRTLRIW 246 (745)
T ss_pred cCCceEEEe
Confidence 555533344
No 230
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.50 E-value=3.1 Score=40.89 Aligned_cols=113 Identities=12% Similarity=0.169 Sum_probs=60.5
Q ss_pred eEEcCCCcEEEEecCCeEEEEe-CCeEEE-EEecCCC---ceeceEEcCCCcEEEEeC--------------CCceEEEc
Q 017520 84 ASMDKNGVIYTATRDGWIKRLQ-DGTWVN-WKFIDSQ---TLVGLTSTKEGHLIICDN--------------ANGLHKVS 144 (370)
Q Consensus 84 i~~d~~G~l~v~~~~g~I~~~~-~g~~~~-~~~~~~~---p~~gl~~d~~G~L~v~~~--------------~~gi~~~~ 144 (370)
+..-++|.++++.. ..+..++ .|++.. +..+.+. -+ .+...++|++++... ...|+.++
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCccccccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 45567888888775 6788888 776433 3222322 46 788889998666443 23688888
Q ss_pred CCC-eEEEEee---cCC--------------------cccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCc
Q 017520 145 EDG-VENFLSY---VNG--------------------SKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHG 199 (370)
Q Consensus 145 ~~g-~~~~~~~---~~g--------------------~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g 199 (370)
++| +...... ... .---+.|++..++ ++.|.++.. ...
T Consensus 231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR-----------------~~s 293 (477)
T PF05935_consen 231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSR-----------------HQS 293 (477)
T ss_dssp TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEET-----------------TT-
T ss_pred CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcC-----------------cce
Confidence 778 4333211 100 0113678899988 678888854 335
Q ss_pred eEEEEeCCCCeEEEEe
Q 017520 200 QLLKYDPSSNITTLVA 215 (370)
Q Consensus 200 ~l~~~d~~t~~~~~~~ 215 (370)
.|+++|..++++....
T Consensus 294 ~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 294 AVIKIDYRTGKIKWIL 309 (477)
T ss_dssp EEEEEE-TTS-EEEEE
T ss_pred EEEEEECCCCcEEEEe
Confidence 7999998788776554
No 231
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=93.50 E-value=8.5 Score=38.01 Aligned_cols=94 Identities=12% Similarity=0.113 Sum_probs=55.4
Q ss_pred CCceEEEEeCCCCeEEE-EecCCCCccceEEccCCCEEEEEeCCcEEEEEeCCCCCCceeeeccCCCCCCCceeECCCC-
Q 017520 197 PHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG- 274 (370)
Q Consensus 197 ~~g~l~~~d~~t~~~~~-~~~~~~~p~gi~~~~dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G- 274 (370)
.+-+|+.........+. +...-..+..+.|.|-.-.++|+....|..||+....+ ++.+. +..-..+.+++++.|
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqel--vKkL~-tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQEL--VKKLL-TGSKWISSMSIHPNGD 620 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHH--HHHHh-cCCeeeeeeeecCCCC
Confidence 44566666654322221 11223356778899988888888876799999754311 11111 111135667777777
Q ss_pred CEEEEEecCchhHHHhhhc
Q 017520 275 TFWIAIIKLDARRMKILNS 293 (370)
Q Consensus 275 ~lwv~~~~~~~~~~~~~~~ 293 (370)
|+.++....+.-++|+...
T Consensus 621 nli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred eEEEecCCCeeEEEEcccC
Confidence 7888888777666665444
No 232
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=93.45 E-value=6.3 Score=36.40 Aligned_cols=119 Identities=12% Similarity=0.106 Sum_probs=71.1
Q ss_pred eEEEEEecCCCceeceEEcCCCcEEEEeCCCce-EEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCC
Q 017520 108 TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGL-HKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYL 184 (370)
Q Consensus 108 ~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi-~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~ 184 (370)
....|........ .+..+|+.+|.++.....+ +.++ .+| +... ..|.+ .++..+.++.||.+..|-.
T Consensus 56 S~~tF~~H~~svF-avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e---ltgHK-DSVt~~~FshdgtlLATGd----- 125 (399)
T KOG0296|consen 56 SLVTFDKHTDSVF-AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE---LTGHK-DSVTCCSFSHDGTLLATGD----- 125 (399)
T ss_pred ceeehhhcCCceE-EEEeCCCCceEEecCCCceEEEEEccCCcceeE---ecCCC-CceEEEEEccCceEEEecC-----
Confidence 3444444455566 7888885555554433333 3333 345 2211 12322 3677889999998777732
Q ss_pred CccceecccccCCCceEEEEeCCCCeEEEEec-CCCCccceEEccCCCEEEEEeCCc-EEEEEeCC
Q 017520 185 PHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESWK-CRKYWLKG 248 (370)
Q Consensus 185 ~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~ 248 (370)
-.|.|..+..+++..+..+. ......-+.++|.+..++.....+ +|.|.+..
T Consensus 126 ------------msG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~ 179 (399)
T KOG0296|consen 126 ------------MSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS 179 (399)
T ss_pred ------------CCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCC
Confidence 34778888887776554332 333345577889888666666666 99998764
No 233
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=93.38 E-value=0.27 Score=35.83 Aligned_cols=64 Identities=11% Similarity=0.044 Sum_probs=43.8
Q ss_pred CCcceEEcCCCc----------EEEEecCCeEEEEeCCeEEEEEecCCCceeceEEcCCC-cEEEEeCC-CceEEEc
Q 017520 80 HPEDASMDKNGV----------IYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNA-NGLHKVS 144 (370)
Q Consensus 80 ~P~~i~~d~~G~----------l~v~~~~g~I~~~~~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~~~~-~gi~~~~ 144 (370)
+|++.++..|+. .|.+..-|.|..++.++.+........|+ ||..++++ .|||++.. +.|..+.
T Consensus 7 G~~sFy~TNDhyf~~~~l~~lE~~l~~~~~~Vvyyd~~~~~~va~g~~~aN-GI~~s~~~k~lyVa~~~~~~I~vy~ 82 (86)
T PF01731_consen 7 GPDSFYVTNDHYFTDPFLRLLETYLGLPWGNVVYYDGKEVKVVASGFSFAN-GIAISPDKKYLYVASSLAHSIHVYK 82 (86)
T ss_pred CcCcEEEECchhhCcHHHHHHHHHhcCCCceEEEEeCCEeEEeeccCCCCc-eEEEcCCCCEEEEEeccCCeEEEEE
Confidence 677777766542 23334456788888666666666667899 99999987 59999876 3455544
No 234
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=93.28 E-value=0.75 Score=42.25 Aligned_cols=141 Identities=11% Similarity=0.090 Sum_probs=75.0
Q ss_pred CcceEEcCCCcEEEEecCCeEEEEe-CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcC--CC-eEEEEeecC
Q 017520 81 PEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSE--DG-VENFLSYVN 156 (370)
Q Consensus 81 P~~i~~d~~G~l~v~~~~g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~--~g-~~~~~~~~~ 156 (370)
-.+|+++....+++|+ +..|-+|. +|............+ ||--...++++++. +..|-.+|. +- ++.+.-..
T Consensus 112 V~Gi~v~~~~~~tvgd-DKtvK~wk~~~~p~~tilg~s~~~-gIdh~~~~~~FaTc-Ge~i~IWD~~R~~Pv~smswG~- 187 (433)
T KOG0268|consen 112 VRGICVTQTSFFTVGD-DKTVKQWKIDGPPLHTILGKSVYL-GIDHHRKNSVFATC-GEQIDIWDEQRDNPVSSMSWGA- 187 (433)
T ss_pred eeeEEecccceEEecC-CcceeeeeccCCcceeeecccccc-cccccccccccccc-CceeeecccccCCccceeecCC-
Confidence 4567888755666665 56677777 664322222233334 66555556666644 233555552 22 33332111
Q ss_pred CcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEE
Q 017520 157 GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVV 235 (370)
Q Consensus 157 g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v 235 (370)
..+..+-+.|-.+ |..+.. .++.|+.||..+.....-..-...+|+|+|+|.. +.++
T Consensus 188 ----Dti~svkfNpvETsILas~~-----------------sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea-fnF~ 245 (433)
T KOG0268|consen 188 ----DSISSVKFNPVETSILASCA-----------------SDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA-FNFV 245 (433)
T ss_pred ----CceeEEecCCCcchheeeec-----------------cCCceEEEecccCCccceeeeeccccceecCccc-ccee
Confidence 1233444444433 333322 3467888987655432111122468999999944 4555
Q ss_pred EeCCc--EEEEEeC
Q 017520 236 CESWK--CRKYWLK 247 (370)
Q Consensus 236 ~~~~~--l~~~~~~ 247 (370)
+.... ++-||+.
T Consensus 246 ~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 246 AANEDHNLYTYDMR 259 (433)
T ss_pred eccccccceehhhh
Confidence 55444 8888864
No 235
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=93.27 E-value=1.7 Score=41.32 Aligned_cols=58 Identities=17% Similarity=0.301 Sum_probs=36.4
Q ss_pred ccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520 221 ANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 282 (370)
Q Consensus 221 p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 282 (370)
..+|+++++|+.+..+...+ +..||+.... ....+. .|-...++.++..|.+-++...
T Consensus 296 V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~--ql~t~~--tp~~a~~ls~SqkglLA~~~G~ 354 (545)
T KOG1272|consen 296 VSSIAVDRGGRYMATTGLDRKVKIWDLRNFY--QLHTYR--TPHPASNLSLSQKGLLALSYGD 354 (545)
T ss_pred cceEEECCCCcEEeecccccceeEeeecccc--ccceee--cCCCccccccccccceeeecCC
Confidence 46899999999766666666 8888876532 122221 1223456777777766665433
No 236
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.12 E-value=4.8 Score=37.19 Aligned_cols=133 Identities=14% Similarity=0.123 Sum_probs=76.4
Q ss_pred ceEEEEeCCCCeEEEEe-cCCCCccce-EEccCCCEEEEEeCC----c-EEEEEeCCCCCCceeeeccCCCCCCCceeEC
Q 017520 199 GQLLKYDPSSNITTLVA-DGFYFANGV-ALSRDEDYVVVCESW----K-CRKYWLKGERKGKLETFAENLPGAPDNINLA 271 (370)
Q Consensus 199 g~l~~~d~~t~~~~~~~-~~~~~p~gi-~~~~dg~~l~v~~~~----~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d 271 (370)
+.+|.||.++-+.-.-. +.-.+|.|+ ++++....-|++-.+ + |..||...-+ ....+ +...+-.--++++
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~--~v~~I-~aH~~~lAalafs 182 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ--PVNTI-NAHKGPLAALAFS 182 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce--eeeEE-EecCCceeEEEEC
Confidence 35888887654332112 222466664 566654434444322 2 8999865421 22222 2233334568899
Q ss_pred CCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEE-C-CCCcEEEEEeCCCCCccccceeEEE
Q 017520 272 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV-A-EDGTIIRNLVDPTGQLMSFVTSGLQ 349 (370)
Q Consensus 272 ~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~-~~g~~~~~~~~~~g~~~~~~t~~~~ 349 (370)
++|++..+.... |.|+++ . ++|+.+..|.- |...-.+.++.+
T Consensus 183 ~~G~llATASeK----------------------------------GTVIRVf~v~~G~kl~eFRR--G~~~~~IySL~F 226 (391)
T KOG2110|consen 183 PDGTLLATASEK----------------------------------GTVIRVFSVPEGQKLYEFRR--GTYPVSIYSLSF 226 (391)
T ss_pred CCCCEEEEeccC----------------------------------ceEEEEEEcCCccEeeeeeC--CceeeEEEEEEE
Confidence 999887775543 456655 3 78888888764 543334456666
Q ss_pred EC-CEEEEEeCCCCeEEEEeCC
Q 017520 350 VD-NHLYVISLTSNFIGKVQLS 370 (370)
Q Consensus 350 ~~-g~L~~gs~~~~~i~~~~~~ 370 (370)
.. ..+...+-+..-|.+++|+
T Consensus 227 s~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 227 SPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCCCCeEEEecCCCeEEEEEec
Confidence 54 5555556667788888874
No 237
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=93.00 E-value=0.49 Score=29.25 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=29.8
Q ss_pred CcEEEEeCCCCCCCccceecccccCCCc-eEEEEeCCCCeEEE-EecCCCCccceEEcc
Q 017520 172 GSLYFTVSSSKYLPHEYCLDILEGKPHG-QLLKYDPSSNITTL-VADGFYFANGVALSR 228 (370)
Q Consensus 172 G~l~v~d~~~~~~~~~~~~~~~~~~~~g-~l~~~d~~t~~~~~-~~~~~~~p~gi~~~~ 228 (370)
|+||.+|.+ .. .+.+.+.++...+. +..++..|+||++++
T Consensus 1 ~~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 578999874 23 78888887666444 457799999999874
No 238
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=92.83 E-value=7.1 Score=38.44 Aligned_cols=152 Identities=17% Similarity=0.230 Sum_probs=73.3
Q ss_pred CcEEEEec-----CCeEEEEe-CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC-eEEEEeecCCccccc
Q 017520 90 GVIYTATR-----DGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYVNGSKLRF 162 (370)
Q Consensus 90 G~l~v~~~-----~g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g-~~~~~~~~~g~~~~~ 162 (370)
..||+.+. .+..+.+| +|.++.+..........+...++|+|+++.. ..+..++..| +...... ++....+
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l-~~~~~~~ 191 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDL-PGGYYDF 191 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE---TTEE-B
T ss_pred CcEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCCCCEEEeeec-CCccccc
Confidence 34665553 45677888 8888766554332220256678999998875 6899999777 3322222 2211234
Q ss_pred ccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec--------------------------
Q 017520 163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-------------------------- 216 (370)
Q Consensus 163 ~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-------------------------- 216 (370)
-+++...++|++.+......+.... .-.......|+.+| .+|++.....
T Consensus 192 HHD~~~l~nGn~L~l~~~~~~~~~~----~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~ 266 (477)
T PF05935_consen 192 HHDIDELPNGNLLILASETKYVDED----KDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGG 266 (477)
T ss_dssp -S-EEE-TTS-EEEEEEETTEE-TS-----EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SST
T ss_pred ccccEECCCCCEEEEEeecccccCC----CCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCC
Confidence 5688999999866654311110000 00011223566666 3444432210
Q ss_pred --CCCCccceEEccCCCEEEEEeCCc--EEEEEeCC
Q 017520 217 --GFYFANGVALSRDEDYVVVCESWK--CRKYWLKG 248 (370)
Q Consensus 217 --~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~ 248 (370)
+....|++.+++..+.++++.+.. |++++.++
T Consensus 267 ~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t 302 (477)
T PF05935_consen 267 GRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT 302 (477)
T ss_dssp TSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred CCCccccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence 012347889998666799988865 89988543
No 239
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=92.70 E-value=11 Score=37.74 Aligned_cols=164 Identities=17% Similarity=0.134 Sum_probs=89.3
Q ss_pred CCcEEEEecCCeEEEEe-CCe--EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC--eEEEEeecCCcccccc
Q 017520 89 NGVIYTATRDGWIKRLQ-DGT--WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFA 163 (370)
Q Consensus 89 ~G~l~v~~~~g~I~~~~-~g~--~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~~~~~~~g~~~~~~ 163 (370)
.|++.+|..|+.|.++. ++. ...+........ ++....++.|.-++++. -.++.+.| ... .+|.. ..+
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC-~ls~~~~~~~iSgSWD~-TakvW~~~~l~~~----l~gH~-asV 143 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVC-SLSIGEDGTLISGSWDS-TAKVWRIGELVYS----LQGHT-ASV 143 (745)
T ss_pred CcceEeecccceEEEEecCCCCchhhhhcccccee-eeecCCcCceEeccccc-ceEEecchhhhcc----cCCcc-hhe
Confidence 56799999898888888 332 222233444566 78877788865566553 34444333 222 23322 245
Q ss_pred cceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EE
Q 017520 164 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CR 242 (370)
Q Consensus 164 ~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~ 242 (370)
..++.=+++ .|+|-+. +..|..|.. ....+.+........|+++-+++. +.-+...+ |.
T Consensus 144 WAv~~l~e~-~~vTgsa-----------------DKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir 203 (745)
T KOG0301|consen 144 WAVASLPEN-TYVTGSA-----------------DKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIR 203 (745)
T ss_pred eeeeecCCC-cEEeccC-----------------cceeeeccC-CchhhhhccchhheeeeEEecCCC-eEeecCCceEE
Confidence 566666776 7777542 233444443 233444444455678899888876 45555555 88
Q ss_pred EEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520 243 KYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~ 283 (370)
+++++|...-+ .+ ....+.--+....++.+.+++...
T Consensus 204 ~w~~~ge~l~~--~~--ghtn~vYsis~~~~~~~Ivs~gED 240 (745)
T KOG0301|consen 204 LWDLDGEVLLE--MH--GHTNFVYSISMALSDGLIVSTGED 240 (745)
T ss_pred EEeccCceeee--ee--ccceEEEEEEecCCCCeEEEecCC
Confidence 88876652211 11 111122223333445567776554
No 240
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=92.56 E-value=7.1 Score=34.57 Aligned_cols=177 Identities=11% Similarity=0.073 Sum_probs=91.4
Q ss_pred CCcceEEcC-CCc-EEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCCceEEEc-CCCeEEEEe
Q 017520 80 HPEDASMDK-NGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDGVENFLS 153 (370)
Q Consensus 80 ~P~~i~~d~-~G~-l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g~~~~~~ 153 (370)
..+.++.++ .-. +.+++.+..|.+|+ .++-..-....+.-. -+...|+|+ +.+++....|..++ ++- +....
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~-~~~~~ 143 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTY-KIVNE 143 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccc-ceeeh
Confidence 456778885 233 44555777888888 554332222222223 467778776 44444445666666 322 11101
Q ss_pred ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEe-CCCCeEEEEecCCCCccceEEccCCCE
Q 017520 154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD-PSSNITTLVADGFYFANGVALSRDEDY 232 (370)
Q Consensus 154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d-~~t~~~~~~~~~~~~p~gi~~~~dg~~ 232 (370)
-....++|.+...-+++++|.+. +.|.|-.+. |.-+.+..+...-.+=..|.++|+|+.
T Consensus 144 ---~~~~~e~ne~~w~~~nd~Fflt~-----------------GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gry 203 (313)
T KOG1407|consen 144 ---EQFKFEVNEISWNNSNDLFFLTN-----------------GLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRY 203 (313)
T ss_pred ---hcccceeeeeeecCCCCEEEEec-----------------CCceEEEEeccccccccccccCCcceEEEEECCCCce
Confidence 01123677888887888888764 234443332 111222211111111124678999996
Q ss_pred EEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520 233 VVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 281 (370)
Q Consensus 233 l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~ 281 (370)
+-+....- +..+|++.- --.+.+. .+.-..+.+.++-||.+.....
T Consensus 204 fA~GsADAlvSLWD~~EL--iC~R~is-RldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 204 FATGSADALVSLWDVDEL--ICERCIS-RLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred EeeccccceeeccChhHh--hhheeec-cccCceEEEEeccCcceeeccC
Confidence 65555544 666776532 1122222 2222246677888887665543
No 241
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.47 E-value=0.66 Score=28.22 Aligned_cols=40 Identities=30% Similarity=0.282 Sum_probs=28.1
Q ss_pred CC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEc
Q 017520 171 DG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALS 227 (370)
Q Consensus 171 ~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~ 227 (370)
+| ++|+++. ..+.|..+|+.+++......-...|.+++++
T Consensus 2 d~~~lyv~~~-----------------~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNS-----------------GSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeC-----------------CCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 44 5999875 3578999999877665444445678887764
No 242
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=92.41 E-value=7.5 Score=34.53 Aligned_cols=109 Identities=12% Similarity=0.075 Sum_probs=65.7
Q ss_pred CceeceEEcCCCcEEEEeCCCceEEEc--CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceeccc
Q 017520 118 QTLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL 193 (370)
Q Consensus 118 ~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~ 193 (370)
||+.-+.+..+|.|+..........+. .+| +-. +.|.. ..+..+++|.+-+..++-+
T Consensus 11 RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGt----y~GHt-GavW~~Did~~s~~liTGS-------------- 71 (327)
T KOG0643|consen 11 RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGT----YDGHT-GAVWCCDIDWDSKHLITGS-------------- 71 (327)
T ss_pred cccceEEecCCCcEEEEecCCCCceEEEecCCceeee----ecCCC-ceEEEEEecCCcceeeecc--------------
Confidence 455467888889877765443332222 245 222 23321 3566677777666666643
Q ss_pred ccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc------EEEEEeCC
Q 017520 194 EGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK------CRKYWLKG 248 (370)
Q Consensus 194 ~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~------l~~~~~~~ 248 (370)
.+..+..||.++|+......--....++.++.+|+.+.++.... |..|++..
T Consensus 72 ---AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~ 129 (327)
T KOG0643|consen 72 ---ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRD 129 (327)
T ss_pred ---ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccC
Confidence 45667788988887765544434456788999998655554322 77888753
No 243
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.29 E-value=12 Score=38.07 Aligned_cols=179 Identities=13% Similarity=0.101 Sum_probs=93.6
Q ss_pred CCCcceEEcCCCcEEEEecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCC-ceEEEc-CCC--eEEE
Q 017520 79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDG--VENF 151 (370)
Q Consensus 79 ~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~-gi~~~~-~~g--~~~~ 151 (370)
..-+++++..+..+..+-.++.|..|+ +.+ +.++ .++..+ +-.|-|.++..+..... .+..++ ... ++.+
T Consensus 374 ~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi--~~~y~l-~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti 450 (888)
T KOG0306|consen 374 SDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTI--TCGYIL-ASKFVPGDRYIVLGTKNGELQVFDLASASLVETI 450 (888)
T ss_pred hheeEEEeecCceeeeecCCCcEEEEEccCcceeEEe--ccccEE-EEEecCCCceEEEeccCCceEEEEeehhhhhhhh
Confidence 346778887665444444677888888 333 3333 344555 66666544433333333 355555 333 2222
Q ss_pred EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeC-------CCC-eEEEEe--cCCC--
Q 017520 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP-------SSN-ITTLVA--DGFY-- 219 (370)
Q Consensus 152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~-------~t~-~~~~~~--~~~~-- 219 (370)
..-. ..+..++..|||.=+++-+. +..|--||. .+. ++-.+. ..+.
T Consensus 451 -~AHd----gaIWsi~~~pD~~g~vT~sa-----------------DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ 508 (888)
T KOG0306|consen 451 -RAHD----GAIWSISLSPDNKGFVTGSA-----------------DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELE 508 (888)
T ss_pred -hccc----cceeeeeecCCCCceEEecC-----------------CcEEEEEeEEEEeccCcccceeeeeccceEEecc
Confidence 1111 35667888888876666442 122222221 111 100000 0111
Q ss_pred -CccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCch
Q 017520 220 -FANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDA 285 (370)
Q Consensus 220 -~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~ 285 (370)
..-.+.++|||++|.++-.++ +.+|-+++-+. -...+...+| ..-+-+++|+++.++....++
T Consensus 509 ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF-flsLYGHkLP--V~smDIS~DSklivTgSADKn 573 (888)
T KOG0306|consen 509 DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF-FLSLYGHKLP--VLSMDISPDSKLIVTGSADKN 573 (888)
T ss_pred ccEEEEEEcCCCcEEEEEeccCeEEEEEecceee-eeeecccccc--eeEEeccCCcCeEEeccCCCc
Confidence 233577899999999998888 88888776432 1122222233 123445677888888766554
No 244
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=6.7 Score=33.63 Aligned_cols=136 Identities=12% Similarity=0.178 Sum_probs=69.9
Q ss_pred CCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCC-CceeeeccCCC-CCCCceeECCC
Q 017520 197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERK-GKLETFAENLP-GAPDNINLAPD 273 (370)
Q Consensus 197 ~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~-~~~~~~~~~~~-g~p~~i~~d~~ 273 (370)
..+.-++||.++-+. +-.--+.-.|..+..|++.|+.++-.. +..-|+++-.. ++..+-.+..| ...+.+.. -|
T Consensus 109 ~egvaf~~d~~t~~~--lg~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-Vd 185 (262)
T COG3823 109 KEGVAFKYDADTLEE--LGRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VD 185 (262)
T ss_pred ccceeEEEChHHhhh--hcccccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-ec
Confidence 346678888764322 111123346777888888777777555 65556544322 12221111111 01122221 24
Q ss_pred CCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEeC--------CCCCccccc
Q 017520 274 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVD--------PTGQLMSFV 344 (370)
Q Consensus 274 G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-g~~~~~~~~--------~~g~~~~~~ 344 (370)
|.+|.-.+.. ..|.+++|+ |+++.-+.- .++...+..
T Consensus 186 G~lyANVw~t----------------------------------~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvl 231 (262)
T COG3823 186 GELYANVWQT----------------------------------TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVL 231 (262)
T ss_pred cEEEEeeeee----------------------------------cceEEEcCCCCcEEEEEEccCCchhcCccccccccc
Confidence 6666665554 237889975 777665422 122222223
Q ss_pred eeEEEE--CCEEEEEeCCCCeEEEEeC
Q 017520 345 TSGLQV--DNHLYVISLTSNFIGKVQL 369 (370)
Q Consensus 345 t~~~~~--~g~L~~gs~~~~~i~~~~~ 369 (370)
..++.. .+++|+.+..=+-+--+++
T Consensus 232 NGIA~~~~~~r~~iTGK~wp~lfEVk~ 258 (262)
T COG3823 232 NGIAHDPQQDRFLITGKLWPLLFEVKL 258 (262)
T ss_pred cceeecCcCCeEEEecCcCceeEEEEe
Confidence 344433 3789999887776655443
No 245
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=92.07 E-value=8.9 Score=34.60 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=34.2
Q ss_pred CceEEEEeCCCCeEEEEecCCC-CccceEEccCCCEEEEEeCCc-EEEEEeCC
Q 017520 198 HGQLLKYDPSSNITTLVADGFY-FANGVALSRDEDYVVVCESWK-CRKYWLKG 248 (370)
Q Consensus 198 ~g~l~~~d~~t~~~~~~~~~~~-~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~ 248 (370)
++.|-.+|+..+.......+.. ...++.++++|..+.-..... +.++|+..
T Consensus 195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred cCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecc
Confidence 4567778886566555554443 457999999999655555555 88888754
No 246
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=91.97 E-value=12 Score=35.75 Aligned_cols=142 Identities=16% Similarity=0.074 Sum_probs=73.6
Q ss_pred cceEEcCCCcEEEEe-cCCeEEEEe--CCe-EEEEEecCCCceeceEEcC-CCcEEEEeCCCceEEEc--CCC-eEEEEe
Q 017520 82 EDASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTK-EGHLIICDNANGLHKVS--EDG-VENFLS 153 (370)
Q Consensus 82 ~~i~~d~~G~l~v~~-~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~-~G~L~v~~~~~gi~~~~--~~g-~~~~~~ 153 (370)
-++|+.+||...+.. .+..|..|+ +.+ ++.+....+... +++|-. ..+||.+..+.++-.++ .-. ++.+..
T Consensus 206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~-~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyG 284 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVS-SLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYG 284 (479)
T ss_pred EEEEEcCCCcEEEecCCCceEEEecCcccchhhccccccccee-eeeeecCccceeeeecCCceEEEehhHhHHHHHHhC
Confidence 357888888655433 556666777 443 455556667777 888852 23699998776665555 223 444322
Q ss_pred ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEE
Q 017520 154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 233 (370)
Q Consensus 154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l 233 (370)
... .+-+|..-..+++ ++... ...+-+||++ ++ ....++..+-.++..+++=.+.. +
T Consensus 285 Hqd-----~v~~IdaL~reR~-vtVGg--------------rDrT~rlwKi-~e-esqlifrg~~~sidcv~~In~~H-f 341 (479)
T KOG0299|consen 285 HQD-----GVLGIDALSRERC-VTVGG--------------RDRTVRLWKI-PE-ESQLIFRGGEGSIDCVAFINDEH-F 341 (479)
T ss_pred Ccc-----ceeeechhcccce-EEecc--------------ccceeEEEec-cc-cceeeeeCCCCCeeeEEEecccc-e
Confidence 211 2223333333442 22111 0123466666 33 22222333444677777766655 3
Q ss_pred EEEeCCc-EEEEEeC
Q 017520 234 VVCESWK-CRKYWLK 247 (370)
Q Consensus 234 ~v~~~~~-l~~~~~~ 247 (370)
+....++ |..+.+.
T Consensus 342 vsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 342 VSGSDNGSIALWSLL 356 (479)
T ss_pred eeccCCceEEEeeec
Confidence 3333344 6666543
No 247
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.90 E-value=12 Score=37.73 Aligned_cols=142 Identities=18% Similarity=0.269 Sum_probs=73.8
Q ss_pred CCcEEEEe-cC------CeEEEEe--CCeEEEEEecCC-C-ceeceEEcCCCcEEEEeCCC------ceEEEcCC-C-eE
Q 017520 89 NGVIYTAT-RD------GWIKRLQ--DGTWVNWKFIDS-Q-TLVGLTSTKEGHLIICDNAN------GLHKVSED-G-VE 149 (370)
Q Consensus 89 ~G~l~v~~-~~------g~I~~~~--~g~~~~~~~~~~-~-p~~gl~~d~~G~L~v~~~~~------gi~~~~~~-g-~~ 149 (370)
+|.||+.- .+ ..+.+|| .+++........ + -. |++.- +|.||+..... .+-++|+. . +.
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~ 409 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWT 409 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEEE-CCEEEEEeccccccccccEEEecCCCCccc
Confidence 56777643 33 2355666 445544332211 1 23 55554 78999975443 26666643 2 54
Q ss_pred EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC--CCccceEEc
Q 017520 150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--YFANGVALS 227 (370)
Q Consensus 150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~--~~p~gi~~~ 227 (370)
...+... . ..-.+++ .-+|.||+.-..... ...-..+.+|||.++.++....-. +.-.|++.-
T Consensus 410 ~va~m~~-~--r~~~gv~-~~~g~iYi~GG~~~~-----------~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~ 474 (571)
T KOG4441|consen 410 PVAPMLT-R--RSGHGVA-VLGGKLYIIGGGDGS-----------SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL 474 (571)
T ss_pred ccCCCCc-c--eeeeEEE-EECCEEEEEcCcCCC-----------ccccceEEEEcCCCCceeecCCcccccccceEEEE
Confidence 4432211 1 1112222 247999998542100 002357999999999887664322 222344332
Q ss_pred cCCCEEEEEeCCc-------EEEEEeCCC
Q 017520 228 RDEDYVVVCESWK-------CRKYWLKGE 249 (370)
Q Consensus 228 ~dg~~l~v~~~~~-------l~~~~~~~~ 249 (370)
++.||+..... +.+||+...
T Consensus 475 --~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 475 --NGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred --CCEEEEECCccCCCccceEEEEcCCCC
Confidence 33477765421 788986554
No 248
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=91.89 E-value=0.63 Score=42.47 Aligned_cols=91 Identities=12% Similarity=0.045 Sum_probs=51.5
Q ss_pred CCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC
Q 017520 197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 274 (370)
Q Consensus 197 ~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G 274 (370)
++..+-.++..|.++.....+ .-.|||--.-...++|+.+.. |..|++..++ .-...+....+.+-|.+|.+
T Consensus 338 gDRTikvW~~st~efvRtl~g--HkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~---cLRvLeGHEeLvRciRFd~k- 411 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCEFVRTLNG--HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA---CLRVLEGHEELVRCIRFDNK- 411 (499)
T ss_pred CCceEEEEeccceeeehhhhc--ccccceehhccCeEEEecCCCceEEEEeccccH---HHHHHhchHHhhhheeecCc-
Confidence 456777888887766443332 234555433233477777655 8888876432 11112233334556777653
Q ss_pred CEEEEEecCchhHHHhhhc
Q 017520 275 TFWIAIIKLDARRMKILNS 293 (370)
Q Consensus 275 ~lwv~~~~~~~~~~~~~~~ 293 (370)
++--|...|...++++.+.
T Consensus 412 rIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 412 RIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred eeeeccccceEEEEecccc
Confidence 5767777777767766543
No 249
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.60 E-value=3.8 Score=40.88 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=38.6
Q ss_pred ceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeC
Q 017520 119 TLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVS 179 (370)
Q Consensus 119 p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~ 179 (370)
.+ .+++.|||.=.+...+.+++.+| .+| .+.+. |.. ..++.++.+.||..+.+-+
T Consensus 15 i~-d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLK----gHK-DtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 15 IN-DIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLK----GHK-DTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred hh-eeEECCCCceEEEecCCEEEEEeCCCcccccccc----ccc-ceEEEEEEccCCceeccCC
Confidence 56 89999999644444467899999 456 44442 221 3578899999999887754
No 250
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=91.58 E-value=1.5 Score=41.00 Aligned_cols=151 Identities=12% Similarity=0.118 Sum_probs=79.1
Q ss_pred cccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-CCCCccceEEccCCCEEEEEeCC
Q 017520 162 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESW 239 (370)
Q Consensus 162 ~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~~~p~gi~~~~dg~~l~v~~~~ 239 (370)
.++.+...|+|+ |..+..+ |..-.++..+-.++.... .-.-..++.++++|++++-++.+
T Consensus 98 ~V~~v~WtPeGRRLltgs~S------------------GEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~g 159 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQS------------------GEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKG 159 (464)
T ss_pred ceeeEEEcCCCceeEeeccc------------------ccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCC
Confidence 567889999985 6555443 334444432111111111 12234678999999976666666
Q ss_pred cEEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec-CchhHHHhhhcchhHHHHHHh---CCccccccccCC
Q 017520 240 KCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK-LDARRMKILNSSKLIKHVLAA---YPKLFSQFITLG 315 (370)
Q Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 315 (370)
++.+||- +.......+......-.+.++++++...++++.. ++..++|+....+. +++.. .+..+.| ++
T Consensus 160 G~iKyWq--pnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee--~vL~GHgwdVksvdW---HP 232 (464)
T KOG0284|consen 160 GMIKYWQ--PNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE--RVLRGHGWDVKSVDW---HP 232 (464)
T ss_pred ceEEecc--cchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh--heeccCCCCcceecc---CC
Confidence 6777763 2223333332222223667888887777777754 44456665443221 11111 2222333 56
Q ss_pred CceEEEEECCCCcEEEEEeCCCC
Q 017520 316 GGAHLIHVAEDGTIIRNLVDPTG 338 (370)
Q Consensus 316 ~~g~v~~~~~~g~~~~~~~~~~g 338 (370)
..|.|.....|. .+..+...+|
T Consensus 233 ~kgLiasgskDn-lVKlWDprSg 254 (464)
T KOG0284|consen 233 TKGLIASGSKDN-LVKLWDPRSG 254 (464)
T ss_pred ccceeEEccCCc-eeEeecCCCc
Confidence 667666666555 4444433444
No 251
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=91.40 E-value=13 Score=36.61 Aligned_cols=112 Identities=19% Similarity=0.268 Sum_probs=67.0
Q ss_pred cceEEc-CCCcEEEEecCCeEEEEe--CCeEEE-EEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCC--eEEE--
Q 017520 82 EDASMD-KNGVIYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENF-- 151 (370)
Q Consensus 82 ~~i~~d-~~G~l~v~~~~g~I~~~~--~g~~~~-~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g--~~~~-- 151 (370)
.+++.+ +.-.||++.....|||++ .|.+-. +....+..+ .+-+.+-..|+.+....|.+.+. ++. +..+
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN-~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELN-VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccce-eeeecCccceEEecccCceEEEecchhhhhheeeec
Confidence 345555 355788877667799999 777543 333334445 66666666677766556666655 332 2222
Q ss_pred Eee---c-CCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE
Q 017520 152 LSY---V-NGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT 212 (370)
Q Consensus 152 ~~~---~-~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~ 212 (370)
... . .+.....+..+.+..+| ++=|+.+ +|.++.||..+.+--
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts------------------~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS------------------TGSVLIYDLRASKPL 263 (703)
T ss_pred ccccCCCccccccCcceEEEecCCceeEEeecc------------------CCcEEEEEcccCCce
Confidence 111 1 12233467788888777 5656543 488999998765443
No 252
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.10 E-value=11 Score=33.65 Aligned_cols=163 Identities=17% Similarity=0.126 Sum_probs=78.7
Q ss_pred CCeEEEEeCCeEEEEEecCC----CceeceEEcCCCcEEEE-e---CCCceEEEcCCC-eEEEEeecCCcccccccceEE
Q 017520 98 DGWIKRLQDGTWVNWKFIDS----QTLVGLTSTKEGHLIIC-D---NANGLHKVSEDG-VENFLSYVNGSKLRFANDVVE 168 (370)
Q Consensus 98 ~g~I~~~~~g~~~~~~~~~~----~p~~gl~~d~~G~L~v~-~---~~~gi~~~~~~g-~~~~~~~~~g~~~~~~~~l~~ 168 (370)
||++.+.+++..+......+ .+. ..++.++|..+.+ . ....++....++ ...+. .+..+.. -.+
T Consensus 1 dG~l~~~~~~~~~pv~g~~~~~~~~~~-s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~---~g~~l~~---PS~ 73 (253)
T PF10647_consen 1 DGQLVRVSGGGVTPVPGALGEGGYDVT-SPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL---TGGSLTR---PSW 73 (253)
T ss_pred CCcEEEecCCceeECCCCcCcCCcccc-ceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec---cCCcccc---ccc
Confidence 35566655443333322211 345 7888888875443 2 223455555444 33332 2222333 388
Q ss_pred cCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE---ecCCC-CccceEEccCCCEEEEEeC----Cc
Q 017520 169 ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV---ADGFY-FANGVALSRDEDYVVVCES----WK 240 (370)
Q Consensus 169 d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~---~~~~~-~p~gi~~~~dg~~l~v~~~----~~ 240 (370)
|++|.+|+.+... ...++++ +..++..... ..... ....+.+++||..+.+.-. ..
T Consensus 74 d~~g~~W~v~~~~---------------~~~~~~~-~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~ 137 (253)
T PF10647_consen 74 DPDGWVWTVDDGS---------------GGVRVVR-DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGR 137 (253)
T ss_pred cCCCCEEEEEcCC---------------CceEEEE-ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCe
Confidence 9999999997531 1122332 2222322221 12222 4567899999987666652 22
Q ss_pred EEEEEeCCCCCC------ceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520 241 CRKYWLKGERKG------KLETFAENLPGAPDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 241 l~~~~~~~~~~~------~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~ 283 (370)
|+.--+.....+ ...........-...+....++.|.|.....
T Consensus 138 v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 138 VYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred EEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence 555443221111 1111111111223456666777777776543
No 253
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=90.92 E-value=20 Score=36.50 Aligned_cols=137 Identities=15% Similarity=0.135 Sum_probs=72.9
Q ss_pred CCcEEEEecCCeEEEEe--CC-eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcC-------CC-eEEEEeecCC
Q 017520 89 NGVIYTATRDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSE-------DG-VENFLSYVNG 157 (370)
Q Consensus 89 ~G~l~v~~~~g~I~~~~--~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~-------~g-~~~~~~~~~g 157 (370)
+.++.+|..+|.+..++ .. -.+++....+... .|...+|+.=++.......+++.. .| .+.+......
T Consensus 424 d~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIW-si~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~ 502 (888)
T KOG0306|consen 424 DRYIVLGTKNGELQVFDLASASLVETIRAHDGAIW-SISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT 502 (888)
T ss_pred CceEEEeccCCceEEEEeehhhhhhhhhcccccee-eeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccc
Confidence 34555666777777776 22 2344445566777 888888887555443333333321 12 1111110011
Q ss_pred cccc---cccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-cceEEccCCCEE
Q 017520 158 SKLR---FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYV 233 (370)
Q Consensus 158 ~~~~---~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-~gi~~~~dg~~l 233 (370)
..+. .+-.+.++|||++....- -+..+-.|-.++-++..-.-+..-| -.+.+++|.+ +
T Consensus 503 rtLel~ddvL~v~~Spdgk~LaVsL-----------------LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSk-l 564 (888)
T KOG0306|consen 503 RTLELEDDVLCVSVSPDGKLLAVSL-----------------LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSK-L 564 (888)
T ss_pred eEEeccccEEEEEEcCCCcEEEEEe-----------------ccCeEEEEEecceeeeeeecccccceeEEeccCCcC-e
Confidence 1111 334567889998655422 2345555555555555444454555 4688999999 5
Q ss_pred EEEeCCc--EEEE
Q 017520 234 VVCESWK--CRKY 244 (370)
Q Consensus 234 ~v~~~~~--l~~~ 244 (370)
.++.+.. |..|
T Consensus 565 ivTgSADKnVKiW 577 (888)
T KOG0306|consen 565 IVTGSADKNVKIW 577 (888)
T ss_pred EEeccCCCceEEe
Confidence 6655544 4444
No 254
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.87 E-value=14 Score=34.55 Aligned_cols=83 Identities=16% Similarity=0.156 Sum_probs=55.9
Q ss_pred CCceEEEEeCCCCeEEEEec-CC--CCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECC
Q 017520 197 PHGQLLKYDPSSNITTLVAD-GF--YFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAP 272 (370)
Q Consensus 197 ~~g~l~~~d~~t~~~~~~~~-~~--~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~ 272 (370)
..+.|..||+..+ .++++. .+ .....+.+.++|+++|++++.+ +..||..+.+.. ..+.....|-+..|...+
T Consensus 224 ~~hqvR~YDt~~q-RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~--g~~~kg~tGsirsih~hp 300 (412)
T KOG3881|consen 224 RYHQVRLYDTRHQ-RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL--GCGLKGITGSIRSIHCHP 300 (412)
T ss_pred cceeEEEecCccc-CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee--ccccCCccCCcceEEEcC
Confidence 4578889999744 333332 11 1224567889999999999988 999998765432 222335566788898888
Q ss_pred CCCEEEEEec
Q 017520 273 DGTFWIAIIK 282 (370)
Q Consensus 273 ~G~lwv~~~~ 282 (370)
.+.+...+.-
T Consensus 301 ~~~~las~GL 310 (412)
T KOG3881|consen 301 THPVLASCGL 310 (412)
T ss_pred CCceEEeecc
Confidence 7776666543
No 255
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=90.83 E-value=12 Score=34.06 Aligned_cols=70 Identities=13% Similarity=0.015 Sum_probs=47.5
Q ss_pred ccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEccCCCEEEEEeCCc-
Q 017520 163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWK- 240 (370)
Q Consensus 163 ~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~dg~~l~v~~~~~- 240 (370)
.+.+.+.+-|.+...- -.+|+|..||..|-.+...... ..-...+++++||+.|+-+.+..
T Consensus 26 a~~~~Fs~~G~~lAvG-----------------c~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVG-----------------CANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS 88 (405)
T ss_pred cceEEeccCcceeeee-----------------ccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCce
Confidence 4566777777643321 2568999999887655433333 23346899999999777777776
Q ss_pred EEEEEeCCC
Q 017520 241 CRKYWLKGE 249 (370)
Q Consensus 241 l~~~~~~~~ 249 (370)
|..||+..+
T Consensus 89 i~lwDl~~g 97 (405)
T KOG1273|consen 89 IKLWDLLKG 97 (405)
T ss_pred eEEEeccCC
Confidence 888887544
No 256
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=90.69 E-value=4.7 Score=37.29 Aligned_cols=79 Identities=14% Similarity=0.149 Sum_probs=52.7
Q ss_pred cCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCc-eEEEc--CCC--eEEEEeecCCcccccccceEE
Q 017520 97 RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS--EDG--VENFLSYVNGSKLRFANDVVE 168 (370)
Q Consensus 97 ~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~--~~g--~~~~~~~~~g~~~~~~~~l~~ 168 (370)
..|.|+.|| +-+ +..+....+... +|+|+++|.+..+...+| |.|+- ++| +.++. .|..--.+..|++
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~~lA-alafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR---RG~~~~~IySL~F 226 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKGPLA-ALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR---RGTYPVSIYSLSF 226 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCCcee-EEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee---CCceeeEEEEEEE
Confidence 468888888 322 344444555556 899999999998776655 55544 777 44443 2333346778999
Q ss_pred cCCCcEEEEeC
Q 017520 169 ASDGSLYFTVS 179 (370)
Q Consensus 169 d~~G~l~v~d~ 179 (370)
++++.+..+.+
T Consensus 227 s~ds~~L~~sS 237 (391)
T KOG2110|consen 227 SPDSQFLAASS 237 (391)
T ss_pred CCCCCeEEEec
Confidence 99998665554
No 257
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=90.67 E-value=19 Score=35.78 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=38.0
Q ss_pred EEecCCCCccceEEccCCCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECC-CCCEEEEEecC
Q 017520 213 LVADGFYFANGVALSRDEDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKL 283 (370)
Q Consensus 213 ~~~~~~~~p~gi~~~~dg~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~ 283 (370)
.........+-+.++.+|+.+-+....+ |+.++++..+.. ..|- ...|.+-...+-+ .-.++|++...
T Consensus 516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ--~PF~-kskG~vq~v~FHPs~p~lfVaTq~~ 588 (733)
T KOG0650|consen 516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ--SPFR-KSKGLVQRVKFHPSKPYLFVATQRS 588 (733)
T ss_pred EEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc--Cchh-hcCCceeEEEecCCCceEEEEeccc
Confidence 4444555667889999999665544322 888887643221 2221 2234444455544 33677777543
No 258
>KOG4328 consensus WD40 protein [Function unknown]
Probab=90.59 E-value=16 Score=34.85 Aligned_cols=28 Identities=11% Similarity=-0.064 Sum_probs=20.7
Q ss_pred CCccceEEccCCCEEEEEeCCc-EEEEEe
Q 017520 219 YFANGVALSRDEDYVVVCESWK-CRKYWL 246 (370)
Q Consensus 219 ~~p~gi~~~~dg~~l~v~~~~~-l~~~~~ 246 (370)
...+...|+|++..|+.+.... |..||.
T Consensus 370 rsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 370 RSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred ceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 3457889999887666665555 999985
No 259
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.56 E-value=17 Score=34.89 Aligned_cols=149 Identities=14% Similarity=0.141 Sum_probs=70.2
Q ss_pred ceEEcCCCcEEE-E-eCCC----ceEEEc-CCCeEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceeccc
Q 017520 122 GLTSTKEGHLII-C-DNAN----GLHKVS-EDGVENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDIL 193 (370)
Q Consensus 122 gl~~d~~G~L~v-~-~~~~----gi~~~~-~~g~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~ 193 (370)
++.+++||+.++ + +.++ .++.++ ++| +.+....... ....+++.+||+ +|.+........ .
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~~---~~~~~~W~~d~~~~~y~~~~~~~~~-~------ 196 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIENP---KFSSVSWSDDGKGFFYTRFDEDQRT-S------ 196 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEEE---ESEEEEECTTSSEEEEEECSTTTSS--------
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCccccc---ccceEEEeCCCCEEEEEEeCccccc-c------
Confidence 467788997443 2 3322 266667 677 1111111111 112388889886 444432100000 0
Q ss_pred ccCCCceEEEEeCCCCeEE--EEecCCCCc---cceEEccCCCEEEEEeCCc-----EEEEEeCCC--CCCceeeeccCC
Q 017520 194 EGKPHGQLLKYDPSSNITT--LVADGFYFA---NGVALSRDEDYVVVCESWK-----CRKYWLKGE--RKGKLETFAENL 261 (370)
Q Consensus 194 ~~~~~g~l~~~d~~t~~~~--~~~~~~~~p---~gi~~~~dg~~l~v~~~~~-----l~~~~~~~~--~~~~~~~~~~~~ 261 (370)
.......|+++...+...+ .+......+ .++..++|++++++....+ ++.++.... .......+....
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 0001346888887655432 444443333 3778899999888765433 777777653 122334443222
Q ss_pred CCCCCceeECCCCCEEEEEec
Q 017520 262 PGAPDNINLAPDGTFWIAIIK 282 (370)
Q Consensus 262 ~g~p~~i~~d~~G~lwv~~~~ 282 (370)
.+.-. ......+.+|+-++.
T Consensus 277 ~~~~~-~v~~~~~~~yi~Tn~ 296 (414)
T PF02897_consen 277 DGVEY-YVDHHGDRLYILTND 296 (414)
T ss_dssp SS-EE-EEEEETTEEEEEE-T
T ss_pred CceEE-EEEccCCEEEEeeCC
Confidence 22111 111224568877764
No 260
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=90.56 E-value=2.5 Score=41.29 Aligned_cols=143 Identities=9% Similarity=0.075 Sum_probs=76.7
Q ss_pred eEEcC-CCcEEEEecCCeEEEEe--CC-eEEEEE---e---cC-----CCceeceEEcCCC-cEEEEeCCCceEEEc-CC
Q 017520 84 ASMDK-NGVIYTATRDGWIKRLQ--DG-TWVNWK---F---ID-----SQTLVGLTSTKEG-HLIICDNANGLHKVS-ED 146 (370)
Q Consensus 84 i~~d~-~G~l~v~~~~g~I~~~~--~g-~~~~~~---~---~~-----~~p~~gl~~d~~G-~L~v~~~~~gi~~~~-~~ 146 (370)
+-+.+ .|-|-+|+.+|.|-.|| +. ....+. . .. ..+. ++.|+.+| ++=|+...+.++.+| +.
T Consensus 181 v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT-al~F~d~gL~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 181 VSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT-ALKFRDDGLHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred eeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce-EEEecCCceeEEeeccCCcEEEEEccc
Confidence 33433 45555666777777777 21 111111 1 11 1256 78998777 577777666688888 44
Q ss_pred CeEEEE-eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceE
Q 017520 147 GVENFL-SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA 225 (370)
Q Consensus 147 g~~~~~-~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~ 225 (370)
....+. ......+......+.-|....++-.|. .-+-.||..+++.-.........|-+|
T Consensus 260 ~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk-------------------~~~kiWd~~~Gk~~asiEpt~~lND~C 320 (703)
T KOG2321|consen 260 SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDK-------------------RILKIWDECTGKPMASIEPTSDLNDFC 320 (703)
T ss_pred CCceeecccCCccceeeecccccCCCceEEecch-------------------HHhhhcccccCCceeeccccCCcCcee
Confidence 311111 111122222221111122223443332 223446777777666556666678899
Q ss_pred EccCCCEEEEEeCCc-EEEEEe
Q 017520 226 LSRDEDYVVVCESWK-CRKYWL 246 (370)
Q Consensus 226 ~~~dg~~l~v~~~~~-l~~~~~ 246 (370)
+-+++..+++++.+. +..|-+
T Consensus 321 ~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 321 FVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred eecCCceEEEecCCCcceeEEc
Confidence 999988777777766 666654
No 261
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.93 E-value=3.8 Score=38.09 Aligned_cols=85 Identities=12% Similarity=0.131 Sum_probs=50.6
Q ss_pred EEEEecCCeEEEEe--CCe--EEEEEecCCCceeceEEcCCCc-EEEEeCCCceEEEc-CCCeEEEEeecCCcccccccc
Q 017520 92 IYTATRDGWIKRLQ--DGT--WVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDGVENFLSYVNGSKLRFAND 165 (370)
Q Consensus 92 l~v~~~~g~I~~~~--~g~--~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g~~~~~~~~~g~~~~~~~~ 165 (370)
+-..+..+.|..|| .++ +..+... ..|.+.+..+++|+ +|+++....+..|| ..+ +.+.-...|. -+++.+
T Consensus 219 fat~T~~hqvR~YDt~~qRRPV~~fd~~-E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~-kl~g~~~kg~-tGsirs 295 (412)
T KOG3881|consen 219 FATITRYHQVRLYDTRHQRRPVAQFDFL-ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG-KLLGCGLKGI-TGSIRS 295 (412)
T ss_pred EEEEecceeEEEecCcccCcceeEeccc-cCcceeeeecCCCcEEEEecccchhheecccCc-eeeccccCCc-cCCcce
Confidence 33445667777777 232 2222222 23333788889996 78888777899999 555 1111111221 147888
Q ss_pred eEEcCCCcEEEEeC
Q 017520 166 VVEASDGSLYFTVS 179 (370)
Q Consensus 166 l~~d~~G~l~v~d~ 179 (370)
|..++.+.+..+.+
T Consensus 296 ih~hp~~~~las~G 309 (412)
T KOG3881|consen 296 IHCHPTHPVLASCG 309 (412)
T ss_pred EEEcCCCceEEeec
Confidence 99998888766654
No 262
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.91 E-value=18 Score=36.20 Aligned_cols=179 Identities=14% Similarity=0.093 Sum_probs=97.4
Q ss_pred CCcceEE-cCCCcEEEEe-cCCeEEEEe--CCeE---EEEE---------ecCCCceeceEEcCCCcEEEEeCCCceEEE
Q 017520 80 HPEDASM-DKNGVIYTAT-RDGWIKRLQ--DGTW---VNWK---------FIDSQTLVGLTSTKEGHLIICDNANGLHKV 143 (370)
Q Consensus 80 ~P~~i~~-d~~G~l~v~~-~~g~I~~~~--~g~~---~~~~---------~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~ 143 (370)
.-.++++ .++..+.++. -+++|..|+ .|.. ..+. .+....+ +++..+.|.++|+..-.+++++
T Consensus 119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY-SLA~N~t~t~ivsGgtek~lr~ 197 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY-SLAMNQTGTIIVSGGTEKDLRL 197 (735)
T ss_pred hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee-eeecCCcceEEEecCcccceEE
Confidence 3556666 4555555544 678899888 4421 1110 0112346 7888888888887655666665
Q ss_pred c--CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-ecCC
Q 017520 144 S--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGF 218 (370)
Q Consensus 144 ~--~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~ 218 (370)
. +++ +..+. |.. ..+..|.+++||+-.++.++ +|.|..+|...++...- .-.-
T Consensus 198 wDprt~~kimkLr----GHT-dNVr~ll~~dDGt~~ls~sS-----------------DgtIrlWdLgqQrCl~T~~vH~ 255 (735)
T KOG0308|consen 198 WDPRTCKKIMKLR----GHT-DNVRVLLVNDDGTRLLSASS-----------------DGTIRLWDLGQQRCLATYIVHK 255 (735)
T ss_pred eccccccceeeee----ccc-cceEEEEEcCCCCeEeecCC-----------------CceEEeeeccccceeeeEEecc
Confidence 5 455 33332 211 35778899999987777653 57777788754433211 1000
Q ss_pred CCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECC-CCCEEEEEecCc
Q 017520 219 YFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLD 284 (370)
Q Consensus 219 ~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~~ 284 (370)
...=.+..+++=..+|.++..+ |++-++..+.. ....+.+..| ...+.... +..+|+++..+.
T Consensus 256 e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~-~tlick~daP--v~~l~~~~~~~~~WvtTtds~ 320 (735)
T KOG0308|consen 256 EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK-STLICKEDAP--VLKLHLHEHDNSVWVTTTDSS 320 (735)
T ss_pred CceEEEeeCCCcceEEecCCCCcEEecccCCchh-heEeecCCCc--hhhhhhccccCCceeeecccc
Confidence 0111233345555688888887 88888766421 1222222222 12233332 224699987764
No 263
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=89.72 E-value=17 Score=33.85 Aligned_cols=151 Identities=13% Similarity=0.190 Sum_probs=96.4
Q ss_pred CCcCCCcceEEcCCCcEEEE-ecCCeEEEEe-CC----eEEEEE--------------------ecCC--CceeceEEcC
Q 017520 76 GSVNHPEDASMDKNGVIYTA-TRDGWIKRLQ-DG----TWVNWK--------------------FIDS--QTLVGLTSTK 127 (370)
Q Consensus 76 ~~~~~P~~i~~d~~G~l~v~-~~~g~I~~~~-~g----~~~~~~--------------------~~~~--~p~~gl~~d~ 127 (370)
|.-...++|.++++|..++. +.|..|-.|+ .. +.+... ...| .|...+.+.+
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 54456788999999977765 4777777776 11 111110 0001 1222677777
Q ss_pred CCcEEEEeCCCceEEEc-CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEE
Q 017520 128 EGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 204 (370)
Q Consensus 128 ~G~L~v~~~~~gi~~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~ 204 (370)
.+.+|-+.+++-|...| .+| ...+... ...+.+...+.-++.++.++ +.-+..|
T Consensus 271 ~~v~yS~SwDHTIk~WDletg~~~~~~~~~------ksl~~i~~~~~~~Ll~~gss-----------------dr~irl~ 327 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLETGGLKSTLTTN------KSLNCISYSPLSKLLASGSS-----------------DRHIRLW 327 (423)
T ss_pred CCceEeecccceEEEEEeecccceeeeecC------cceeEeecccccceeeecCC-----------------CCceeec
Confidence 78899999888899999 666 4433221 35677788887788877553 2346678
Q ss_pred eCCCCeEEEEe----cCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCC
Q 017520 205 DPSSNITTLVA----DGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGE 249 (370)
Q Consensus 205 d~~t~~~~~~~----~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~ 249 (370)
||.++.-.++. ..-....++.++|...+.+++.... +..+|+...
T Consensus 328 DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 328 DPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred CCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 88766443332 2233567888999888888887755 777776543
No 264
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=89.64 E-value=13 Score=32.97 Aligned_cols=81 Identities=25% Similarity=0.365 Sum_probs=46.2
Q ss_pred eEEEEeCCCCeEEEEe-------cCCCCccceEEccC---CC-EEEEEeCCc-EEEEEeCCC---CCC--ceeeeccCCC
Q 017520 200 QLLKYDPSSNITTLVA-------DGFYFANGVALSRD---ED-YVVVCESWK-CRKYWLKGE---RKG--KLETFAENLP 262 (370)
Q Consensus 200 ~l~~~d~~t~~~~~~~-------~~~~~p~gi~~~~d---g~-~l~v~~~~~-l~~~~~~~~---~~~--~~~~~~~~~~ 262 (370)
.+|.+|++.+..+.+. .++..+.|+++..+ |. .++|+...+ +..|.+-.. +.+ ..+.| ..+
T Consensus 127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~f--k~~ 204 (364)
T COG4247 127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQF--KIP 204 (364)
T ss_pred EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEee--ecC
Confidence 4677777766555443 34667889888654 33 344555555 888876432 111 12222 233
Q ss_pred CCCCceeE-CCCCCEEEEEec
Q 017520 263 GAPDNINL-APDGTFWIAIIK 282 (370)
Q Consensus 263 g~p~~i~~-d~~G~lwv~~~~ 282 (370)
....|+.. |+-|.+||+...
T Consensus 205 tQTEG~VaDdEtG~LYIaeEd 225 (364)
T COG4247 205 TQTEGMVADDETGFLYIAEED 225 (364)
T ss_pred CcccceeeccccceEEEeecc
Confidence 33456554 567899999654
No 265
>PHA02713 hypothetical protein; Provisional
Probab=89.10 E-value=24 Score=35.54 Aligned_cols=152 Identities=12% Similarity=0.116 Sum_probs=72.3
Q ss_pred CCcEEEEec-C------CeEEEEe--CCeEEEEEecC-CC-ceeceEEcCCCcEEEEeCCC------ceEEEcC-CC-eE
Q 017520 89 NGVIYTATR-D------GWIKRLQ--DGTWVNWKFID-SQ-TLVGLTSTKEGHLIICDNAN------GLHKVSE-DG-VE 149 (370)
Q Consensus 89 ~G~l~v~~~-~------g~I~~~~--~g~~~~~~~~~-~~-p~~gl~~d~~G~L~v~~~~~------gi~~~~~-~g-~~ 149 (370)
+|.||+... + ..+++++ ++++....+.. .+ -. +++. -+|.||+..... .+.++++ +. +.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 678887532 1 2477777 55555443211 11 12 3333 368999965432 2566773 44 55
Q ss_pred EEEeecCCcccccccceEEcCCCcEEEEeCCCCCC---Cccceecc--c-ccCCCceEEEEeCCCCeEEEEecC--CCCc
Q 017520 150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYL---PHEYCLDI--L-EGKPHGQLLKYDPSSNITTLVADG--FYFA 221 (370)
Q Consensus 150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~---~~~~~~~~--~-~~~~~g~l~~~d~~t~~~~~~~~~--~~~p 221 (370)
.+.+. +... ... .++ .-+|.||+.-...... .......+ . .......+.+|||.+++++.+..- ....
T Consensus 381 ~~~~m-p~~r-~~~-~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~ 456 (557)
T PHA02713 381 MLPDM-PIAL-SSY-GMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR 456 (557)
T ss_pred ECCCC-Cccc-ccc-cEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc
Confidence 43321 1111 111 222 2468999974321100 00000000 0 001135699999999988765431 1112
Q ss_pred cceEEccCCCEEEEEeCC-------c-EEEEEeCC
Q 017520 222 NGVALSRDEDYVVVCESW-------K-CRKYWLKG 248 (370)
Q Consensus 222 ~gi~~~~dg~~l~v~~~~-------~-l~~~~~~~ 248 (370)
.+++. -+++ ||+.... . +.+||+..
T Consensus 457 ~~~~~-~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 457 PGVVS-HKDD-IYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred CcEEE-ECCE-EEEEeCCCCCCccceeEEEecCCC
Confidence 23332 2344 7877521 2 67898764
No 266
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.01 E-value=28 Score=35.24 Aligned_cols=91 Identities=14% Similarity=0.086 Sum_probs=48.2
Q ss_pred CCcEEEEecCCeEEEEe-C-CeEEEEEec--CCCceeceEEcCCCcEEEEeCCCceEEEc--CCC--e-EEEEeecCCcc
Q 017520 89 NGVIYTATRDGWIKRLQ-D-GTWVNWKFI--DSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG--V-ENFLSYVNGSK 159 (370)
Q Consensus 89 ~G~l~v~~~~g~I~~~~-~-g~~~~~~~~--~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g--~-~~~~~~~~g~~ 159 (370)
+-.+-+|+..|.||-++ . |....+... .+... ...++++..+.++...+|.+.+- ..+ - ..+.....-..
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~-~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~ 123 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITC-VRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH 123 (726)
T ss_pred CceEEEecccceEEEEecCchhhhcccccCccceEE-EEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence 34667777777788777 3 333333221 12222 45556666666555555555443 112 1 11111111111
Q ss_pred cccccceEEcCCC-cEEEEeCC
Q 017520 160 LRFANDVVEASDG-SLYFTVSS 180 (370)
Q Consensus 160 ~~~~~~l~~d~~G-~l~v~d~~ 180 (370)
-..+..+.++++| ++|.+|+.
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~ 145 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQ 145 (726)
T ss_pred CceEEEEEecccccEEeecCCC
Confidence 2467789999999 79999874
No 267
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.89 E-value=18 Score=32.85 Aligned_cols=139 Identities=14% Similarity=0.110 Sum_probs=78.3
Q ss_pred CCCcEEEEecCCeEEEEe--C--C-eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecCCccc
Q 017520 88 KNGVIYTATRDGWIKRLQ--D--G-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKL 160 (370)
Q Consensus 88 ~~G~l~v~~~~g~I~~~~--~--g-~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~ 160 (370)
+..++|++++..++..+| + . +.+-+....+-.. |+.+. -..+||++...|++.++ .+- ..+++..... +.
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay-gv~vs-Gn~aYVadlddgfLivdvsdpssP~lagrya~-~~ 171 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY-GVYVS-GNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL-PG 171 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE-EEEec-CCEEEEeeccCcEEEEECCCCCCceeeeeecc-CC
Confidence 356899999777799988 2 1 2333333445556 66664 23599999888999999 443 3444333221 11
Q ss_pred ccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC---CCccceEEccCCCEEEEEe
Q 017520 161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF---YFANGVALSRDEDYVVVCE 237 (370)
Q Consensus 161 ~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~---~~p~gi~~~~dg~~l~v~~ 237 (370)
...++++++ ..+.|++.. +++|..+|.....--++.... ....++.+++ +..|+..
T Consensus 172 ~d~~~v~IS-Gn~AYvA~~------------------d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsd--nr~y~vv 230 (370)
T COG5276 172 GDTHDVAIS-GNYAYVAWR------------------DGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSD--NRAYLVV 230 (370)
T ss_pred CCceeEEEe-cCeEEEEEe------------------CCCeEEEEccCCCCCeEEEEEecCCceEEEEecC--CeeEEEE
Confidence 223566664 236788753 356777765422211221111 1233444443 3467766
Q ss_pred CCc-EEEEEeCCCC
Q 017520 238 SWK-CRKYWLKGER 250 (370)
Q Consensus 238 ~~~-l~~~~~~~~~ 250 (370)
.+. +...|.++++
T Consensus 231 y~egvlivd~s~~s 244 (370)
T COG5276 231 YDEGVLIVDVSGPS 244 (370)
T ss_pred cccceEEEecCCCC
Confidence 655 8888887764
No 268
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=88.85 E-value=14 Score=37.85 Aligned_cols=144 Identities=17% Similarity=0.223 Sum_probs=79.1
Q ss_pred cceEEcCCCcEE-EEecCCeEEEEe-CC---e-----EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCCeE
Q 017520 82 EDASMDKNGVIY-TATRDGWIKRLQ-DG---T-----WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDGVE 149 (370)
Q Consensus 82 ~~i~~d~~G~l~-v~~~~g~I~~~~-~g---~-----~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g~~ 149 (370)
.+.++.+.++.. .++.+|+|..|. -| . .-.| ...... ++++..+|.........+++... .++.+
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW--H~~~V~-~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k 285 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW--HHDEVN-SLSFSSDGAYLLSGGREGVLVLWQLETGKK 285 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe--cccccc-eeEEecCCceEeecccceEEEEEeecCCCc
Confidence 345666766544 455889999887 22 1 1122 223456 89999999644444445776666 34434
Q ss_pred EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe------------cC
Q 017520 150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA------------DG 217 (370)
Q Consensus 150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~------------~~ 217 (370)
++.+... .-+-++++.+|+++|-.... ++.+..+...+-...... ..
T Consensus 286 qfLPRLg----s~I~~i~vS~ds~~~sl~~~-----------------DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~ 344 (792)
T KOG1963|consen 286 QFLPRLG----SPILHIVVSPDSDLYSLVLE-----------------DNQIHLIKASDLEIKSTISGIKPPTPSTKTRP 344 (792)
T ss_pred ccccccC----CeeEEEEEcCCCCeEEEEec-----------------CceEEEEeccchhhhhhccCccCCCccccccc
Confidence 4433322 23567899999988776431 233333332111111100 11
Q ss_pred CCCccceEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520 218 FYFANGVALSRDEDYVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 218 ~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~ 249 (370)
...+.+++++|.-+.+......+ |.-||+-..
T Consensus 345 ~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 345 QSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred cccceeEEEcCCCCceeecCCCceEEEEecccc
Confidence 34567889999544444444444 888887543
No 269
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=88.62 E-value=9.7 Score=34.79 Aligned_cols=148 Identities=10% Similarity=0.084 Sum_probs=82.8
Q ss_pred cCCCcceEEcCCC-cEEEEecCCeEEEEe---CCeEE-EE---Ee----cCCCceeceEEcCCC--cEEEEeCCC--ceE
Q 017520 78 VNHPEDASMDKNG-VIYTATRDGWIKRLQ---DGTWV-NW---KF----IDSQTLVGLTSTKEG--HLIICDNAN--GLH 141 (370)
Q Consensus 78 ~~~P~~i~~d~~G-~l~v~~~~g~I~~~~---~g~~~-~~---~~----~~~~p~~gl~~d~~G--~L~v~~~~~--gi~ 141 (370)
+....++++.+|| .||.|.. .-|..|+ .|... .+ .. ..+-.. .+++.|.. .+-++.+.+ ||+
T Consensus 158 ~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~giis-c~a~sP~~~~~~a~gsY~q~~giy 235 (406)
T KOG2919|consen 158 YTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS-CFAFSPMDSKTLAVGSYGQRVGIY 235 (406)
T ss_pred hhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccceee-eeeccCCCCcceeeecccceeeeE
Confidence 4467889999999 5666664 4588888 45321 11 11 122234 67888755 344555544 455
Q ss_pred EEcCCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe---cC
Q 017520 142 KVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DG 217 (370)
Q Consensus 142 ~~~~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~---~~ 217 (370)
.-+..+ +..+.. ..+.+..|.+-++|+-+|+-+ +....|.++|.. .....+. ..
T Consensus 236 ~~~~~~pl~llgg-----h~gGvThL~~~edGn~lfsGa----------------Rk~dkIl~WDiR-~~~~pv~~L~rh 293 (406)
T KOG2919|consen 236 NDDGRRPLQLLGG-----HGGGVTHLQWCEDGNKLFSGA----------------RKDDKILCWDIR-YSRDPVYALERH 293 (406)
T ss_pred ecCCCCceeeecc-----cCCCeeeEEeccCcCeecccc----------------cCCCeEEEEeeh-hccchhhhhhhh
Confidence 444333 443321 124677889999996444432 145678888864 2222111 11
Q ss_pred CC-Cccce--EEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520 218 FY-FANGV--ALSRDEDYVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 218 ~~-~p~gi--~~~~dg~~l~v~~~~~-l~~~~~~~~ 249 (370)
.. ...-| .+++++++|.-.++.+ |.+||+++.
T Consensus 294 v~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 294 VGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred ccCccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence 11 12234 3467888655555777 999998763
No 270
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=88.54 E-value=1.3 Score=26.88 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=22.2
Q ss_pred CcCCCcceEEcC-CCcEEEEe-cCCeEEEEe-CC
Q 017520 77 SVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG 107 (370)
Q Consensus 77 ~~~~P~~i~~d~-~G~l~v~~-~~g~I~~~~-~g 107 (370)
.+..|.++++|. .+.||.++ ..+.|.+.+ +|
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 467888888886 46788887 456677766 54
No 271
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=88.48 E-value=20 Score=36.42 Aligned_cols=70 Identities=17% Similarity=0.003 Sum_probs=41.2
Q ss_pred cccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc----cceEEccCCCEEEEEe
Q 017520 162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA----NGVALSRDEDYVVVCE 237 (370)
Q Consensus 162 ~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p----~gi~~~~dg~~l~v~~ 237 (370)
-.++|++||.-.+.++.- .+..|..||.+.++....+.+-..- --+.+||.|.++..+-
T Consensus 598 TlYDm~Vdp~~k~v~t~c-----------------QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc 660 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVC-----------------QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC 660 (1080)
T ss_pred eEEEeeeCCCcceEEEEe-----------------cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee
Confidence 456778877655444421 2345777787777666555544333 3467788885433334
Q ss_pred CCc-EEEEEeCC
Q 017520 238 SWK-CRKYWLKG 248 (370)
Q Consensus 238 ~~~-l~~~~~~~ 248 (370)
++. |..||.-.
T Consensus 661 sdktl~~~Df~s 672 (1080)
T KOG1408|consen 661 SDKTLCFVDFVS 672 (1080)
T ss_pred cCCceEEEEecc
Confidence 444 88888643
No 272
>PHA02713 hypothetical protein; Provisional
Probab=88.37 E-value=30 Score=34.83 Aligned_cols=98 Identities=10% Similarity=0.093 Sum_probs=50.8
Q ss_pred eEEEEe--CCeEEEEEecCCC--ceeceEEcCCCcEEEEeCC-------CceEEEc-CCC-eEEEEeecCCcccccccce
Q 017520 100 WIKRLQ--DGTWVNWKFIDSQ--TLVGLTSTKEGHLIICDNA-------NGLHKVS-EDG-VENFLSYVNGSKLRFANDV 166 (370)
Q Consensus 100 ~I~~~~--~g~~~~~~~~~~~--p~~gl~~d~~G~L~v~~~~-------~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l 166 (370)
.+.+++ .+++......... .. +.++- ++.||+.... ..+.+++ .+. +..+.+. +..+ ... .
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~-~~a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m-~~~R-~~~-~- 346 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINY-ASAIV-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM-IKNR-CRF-S- 346 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccce-EEEEE-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC-cchh-hce-e-
Confidence 466777 5566554332211 13 34443 6789997542 1266777 344 4433221 1111 111 2
Q ss_pred EEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe
Q 017520 167 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 215 (370)
Q Consensus 167 ~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~ 215 (370)
+..-+|.||+.-... .......+.+||+.++++..+.
T Consensus 347 ~~~~~g~IYviGG~~------------~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 347 LAVIDDTIYAIGGQN------------GTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred EEEECCEEEEECCcC------------CCCCCceEEEEECCCCeEEECC
Confidence 233468999874420 0012346899999988887654
No 273
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.29 E-value=22 Score=33.08 Aligned_cols=146 Identities=17% Similarity=0.179 Sum_probs=79.4
Q ss_pred CCcceEEcCCCc-EEEEecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCC--eEEE
Q 017520 80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENF 151 (370)
Q Consensus 80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g--~~~~ 151 (370)
+-.++++-+.|+ |.-...+..|..++ +|. +.++.....-.. -+++..||.|+.+.....-+++. .++ ...+
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr-~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l 273 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR-MVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL 273 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEE-EEEecCCeeEEEecCCCceEEEEEeccchhhhhh
Confidence 344566666663 22233677788777 443 444443333344 57777888888865544333333 222 1111
Q ss_pred EeecCCcccccccceEEcCC--------------C-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-
Q 017520 152 LSYVNGSKLRFANDVVEASD--------------G-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA- 215 (370)
Q Consensus 152 ~~~~~g~~~~~~~~l~~d~~--------------G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~- 215 (370)
... + .-+.-+++.|+ | .+.++ ...++.+-.+|..++.+-.-.
T Consensus 274 R~h-E----h~vEci~wap~~~~~~i~~at~~~~~~~~l~s-----------------~SrDktIk~wdv~tg~cL~tL~ 331 (406)
T KOG0295|consen 274 REH-E----HPVECIAWAPESSYPSISEATGSTNGGQVLGS-----------------GSRDKTIKIWDVSTGMCLFTLV 331 (406)
T ss_pred hcc-c----cceEEEEecccccCcchhhccCCCCCccEEEe-----------------ecccceEEEEeccCCeEEEEEe
Confidence 000 0 00111122111 1 22222 124567777888888664333
Q ss_pred cCCCCccceEEccCCCEEEEEeCCc-EEEEEeCC
Q 017520 216 DGFYFANGVALSRDEDYVVVCESWK-CRKYWLKG 248 (370)
Q Consensus 216 ~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~ 248 (370)
.......+++++|.|++|+-+..++ |.+||++.
T Consensus 332 ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 332 GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN 365 (406)
T ss_pred cccceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence 3445678999999999877777666 99999764
No 274
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.90 E-value=13 Score=37.19 Aligned_cols=143 Identities=11% Similarity=0.134 Sum_probs=74.6
Q ss_pred CCcceEEcCCCcEEEEe-cCCeEEEEe--CC-eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC----eEEE
Q 017520 80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG----VENF 151 (370)
Q Consensus 80 ~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g----~~~~ 151 (370)
.-.++|..+.|.+.++. -++-|..|+ .+ ++..+...-.... .+.+++||+=.+.....|..++..-| +..+
T Consensus 173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr-~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR-VLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred ceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceE-EEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence 34556666778787765 344455556 33 4555554445566 78888999766655556666665322 3332
Q ss_pred EeecCCcccccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCC-eEEEEecCCCCccceEEccC
Q 017520 152 LSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITTLVADGFYFANGVALSRD 229 (370)
Q Consensus 152 ~~~~~g~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~-~~~~~~~~~~~p~gi~~~~d 229 (370)
.-.. ..+..+..+++ -.+|.++. .+.|++-|..+. +.+.+...-.-..-+.++.+
T Consensus 252 ~vH~-----e~VWaL~~~~sf~~vYsG~r------------------d~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~ 308 (735)
T KOG0308|consen 252 IVHK-----EGVWALQSSPSFTHVYSGGR------------------DGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEH 308 (735)
T ss_pred Eecc-----CceEEEeeCCCcceEEecCC------------------CCcEEecccCCchhheEeecCCCchhhhhhccc
Confidence 2111 12445555443 24555543 356666665432 11222221111223444444
Q ss_pred CCEEEEEeCCc-EEEEEe
Q 017520 230 EDYVVVCESWK-CRKYWL 246 (370)
Q Consensus 230 g~~l~v~~~~~-l~~~~~ 246 (370)
.+.+|++.+.. |.||..
T Consensus 309 ~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 309 DNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred cCCceeeeccccceecCC
Confidence 44467777776 777643
No 275
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=87.43 E-value=12 Score=36.00 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=57.5
Q ss_pred eEEEEe--CCeEEEEEecC---CCceeceEEc--CCC-cEEEEeCC-CceEEEc--CCC---eEEEEeec----CCc---
Q 017520 100 WIKRLQ--DGTWVNWKFID---SQTLVGLTST--KEG-HLIICDNA-NGLHKVS--EDG---VENFLSYV----NGS--- 158 (370)
Q Consensus 100 ~I~~~~--~g~~~~~~~~~---~~p~~gl~~d--~~G-~L~v~~~~-~gi~~~~--~~g---~~~~~~~~----~g~--- 158 (370)
.+..|+ ..+.......+ ..|+ -+++. |+- .=||+..- ..|+++. ++| .+.++... ++.
T Consensus 223 ~l~vWD~~~r~~~Q~idLg~~g~~pL-EvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp 301 (461)
T PF05694_consen 223 SLHVWDWSTRKLLQTIDLGEEGQMPL-EVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILP 301 (461)
T ss_dssp EEEEEETTTTEEEEEEES-TTEEEEE-EEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---
T ss_pred eEEEEECCCCcEeeEEecCCCCCceE-EEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccc
Confidence 566677 45544333322 2466 67765 322 34665444 4677776 345 33333221 111
Q ss_pred cc--------ccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCC-eE----EEEecCC------
Q 017520 159 KL--------RFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-IT----TLVADGF------ 218 (370)
Q Consensus 159 ~~--------~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~-~~----~~~~~~~------ 218 (370)
.+ ..+.+|.++.|. .|||++. .+|.+..||...- .- ++...+.
T Consensus 302 ~ml~~~~~~P~LitDI~iSlDDrfLYvs~W-----------------~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~ 364 (461)
T PF05694_consen 302 EMLKPFGAVPPLITDILISLDDRFLYVSNW-----------------LHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDH 364 (461)
T ss_dssp GGGGGG-EE------EEE-TTS-EEEEEET-----------------TTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--
T ss_pred ccccccccCCCceEeEEEccCCCEEEEEcc-----------------cCCcEEEEecCCCCCCcEEeEEEECcEeccCCC
Confidence 11 356788888777 5999976 4578888885421 11 1111211
Q ss_pred ---------CCccceEEccCCCEEEEEeC
Q 017520 219 ---------YFANGVALSRDEDYVVVCES 238 (370)
Q Consensus 219 ---------~~p~gi~~~~dg~~l~v~~~ 238 (370)
..|+-+.+|-||+.|||+++
T Consensus 365 ~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 365 PVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp TTS------S----EEE-TTSSEEEEE--
T ss_pred ccccccccCCCCCeEEEccCCeEEEEEee
Confidence 24678999999999999985
No 276
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.40 E-value=26 Score=33.00 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=33.0
Q ss_pred ceEEcCCCcEEEEeCCCceEEEc--CCCeEEEEeecCCcccccccceEEcCCCcEEEEeC
Q 017520 122 GLTSTKEGHLIICDNANGLHKVS--EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVS 179 (370)
Q Consensus 122 gl~~d~~G~L~v~~~~~gi~~~~--~~g~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~ 179 (370)
.+++..+|.+..+....|.+|+. |+-.+.+ . .......+++|++++||.+.++-+
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l-~--e~~~~~eV~DL~FS~dgk~lasig 205 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL-E--EIAHHAEVKDLDFSPDGKFLASIG 205 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhhh-h--hHhhcCccccceeCCCCcEEEEec
Confidence 57777777766554345655554 3221111 1 112235789999999999877755
No 277
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=87.31 E-value=18 Score=33.26 Aligned_cols=136 Identities=15% Similarity=0.135 Sum_probs=75.3
Q ss_pred CceEEEEeCCCCeEE-EEecCCCCccceEEcc--CCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECC-
Q 017520 198 HGQLLKYDPSSNITT-LVADGFYFANGVALSR--DEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAP- 272 (370)
Q Consensus 198 ~g~l~~~d~~t~~~~-~~~~~~~~p~gi~~~~--dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~- 272 (370)
+|.+..||+.+++.- .+...-...|++.|.. ....++.+.+.+ |..||+.......+..+. ..++.| -+++|.
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~-~~~~~~-f~~ld~n 126 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT-QQSGTP-FICLDLN 126 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc-CCCCCc-ceEeecc
Confidence 578888998876542 2222233457888865 456688888888 999998653222222222 233323 355665
Q ss_pred -CCCEEEEE-ecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-C-CcEEEEEeCCCCCccccceeEE
Q 017520 273 -DGTFWIAI-IKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-D-GTIIRNLVDPTGQLMSFVTSGL 348 (370)
Q Consensus 273 -~G~lwv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~-g~~~~~~~~~~g~~~~~~t~~~ 348 (370)
++++...- .. ......++.+|- . -+.++.|.+.. .+.+|.+.
T Consensus 127 ck~~ii~~GtE~-------------------------------~~s~A~v~lwDvR~~qq~l~~~~eSH---~DDVT~lr 172 (376)
T KOG1188|consen 127 CKKNIIACGTEL-------------------------------TRSDASVVLWDVRSEQQLLRQLNESH---NDDVTQLR 172 (376)
T ss_pred CcCCeEEecccc-------------------------------ccCceEEEEEEeccccchhhhhhhhc---cCcceeEE
Confidence 55554442 21 112234666663 2 33366665432 44677777
Q ss_pred EE--CCEEEEEeCCCCeEEEEeC
Q 017520 349 QV--DNHLYVISLTSNFIGKVQL 369 (370)
Q Consensus 349 ~~--~g~L~~gs~~~~~i~~~~~ 369 (370)
+. +.+|.+.+-....+-++++
T Consensus 173 FHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 173 FHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred ecCCCCCeEEeecccceEEeeec
Confidence 75 3456665555556666553
No 278
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=87.08 E-value=24 Score=32.35 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=44.7
Q ss_pred CCcEEEEe--cCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCC-cEEEEeCC-CceEEEc-CCC--eEEEEeecCCc
Q 017520 89 NGVIYTAT--RDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEG-HLIICDNA-NGLHKVS-EDG--VENFLSYVNGS 158 (370)
Q Consensus 89 ~G~l~v~~--~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G-~L~v~~~~-~gi~~~~-~~g--~~~~~~~~~g~ 158 (370)
+|+.+.+- ..|-|+.+| .++. ..+...++..+ .|.+.|+. +|.++... +.|...+ .++ +-++ ....|.
T Consensus 103 ~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sIN-eik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf-GG~egH 180 (385)
T KOG1034|consen 103 TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSIN-EIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF-GGVEGH 180 (385)
T ss_pred CCCeeEEeecceeEEEEEecchhhhccceeccCccch-hhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe-cccccc
Confidence 35655433 456666677 4443 34455666677 88888766 56665444 4444444 555 4433 233443
Q ss_pred ccccccceEEcCCCc
Q 017520 159 KLRFANDVVEASDGS 173 (370)
Q Consensus 159 ~~~~~~~l~~d~~G~ 173 (370)
+ ..+-.+.++.+|.
T Consensus 181 r-deVLSvD~~~~gd 194 (385)
T KOG1034|consen 181 R-DEVLSVDFSLDGD 194 (385)
T ss_pred c-CcEEEEEEcCCCC
Confidence 3 2344566677776
No 279
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=87.06 E-value=27 Score=32.78 Aligned_cols=131 Identities=25% Similarity=0.222 Sum_probs=67.6
Q ss_pred eEEEEeCCCCeEEEEec------CCCCccceEEccCCCEEEEEeCCc------EEEEEeCCCCCCceeeeccCCCC---C
Q 017520 200 QLLKYDPSSNITTLVAD------GFYFANGVALSRDEDYVVVCESWK------CRKYWLKGERKGKLETFAENLPG---A 264 (370)
Q Consensus 200 ~l~~~d~~t~~~~~~~~------~~~~p~gi~~~~dg~~l~v~~~~~------l~~~~~~~~~~~~~~~~~~~~~g---~ 264 (370)
.|+.+|.++++...+.. .......+.+.+|++.+++...++ +..+|......... ..+..++ .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~--~~e~~~~Wv~~ 236 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVV--LEETSDGWVDV 236 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEE--EEEESSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEE--EEecCCcceee
Confidence 56777877766533221 112224577888888566665544 66677754322111 1111111 2
Q ss_pred CCceeEC-CCC--CEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcc
Q 017520 265 PDNINLA-PDG--TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLM 341 (370)
Q Consensus 265 p~~i~~d-~~G--~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~ 341 (370)
...+.+- ++| -+|+....+ +..|+.++.+|+....++. |. .
T Consensus 237 ~~~~~~~~~~~~~~l~~s~~~G---------------------------------~~hly~~~~~~~~~~~lT~--G~-~ 280 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWISERDG---------------------------------YRHLYLYDLDGGKPRQLTS--GD-W 280 (353)
T ss_dssp SSEEEE-TTTSSEEEEEEETTS---------------------------------SEEEEEEETTSSEEEESS---SS-S
T ss_pred ecccccccCCCCEEEEEEEcCC---------------------------------CcEEEEEcccccceecccc--Cc-e
Confidence 3344432 444 466665333 5678999998888775554 32 1
Q ss_pred ccceeEE---EECCEEEEEeCC----CCeEEEEeC
Q 017520 342 SFVTSGL---QVDNHLYVISLT----SNFIGKVQL 369 (370)
Q Consensus 342 ~~~t~~~---~~~g~L~~gs~~----~~~i~~~~~ 369 (370)
.++.+. +.++.||+.+.. ...|-++++
T Consensus 281 -~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 281 -EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp --EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred -eecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 232222 224778877665 335555554
No 280
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=86.37 E-value=11 Score=37.58 Aligned_cols=138 Identities=17% Similarity=0.131 Sum_probs=76.8
Q ss_pred eEEcC--CCcEEEEecCCeEEEEe---CCe------EEEEE-ecCCCceeceEEcC--CCcEEEEeCCCceEEEc-CCC-
Q 017520 84 ASMDK--NGVIYTATRDGWIKRLQ---DGT------WVNWK-FIDSQTLVGLTSTK--EGHLIICDNANGLHKVS-EDG- 147 (370)
Q Consensus 84 i~~d~--~G~l~v~~~~g~I~~~~---~g~------~~~~~-~~~~~p~~gl~~d~--~G~L~v~~~~~gi~~~~-~~g- 147 (370)
+..|+ +-+|-|++.+|+|..|. +|- .+... ....... .|.|.+ .+-|.++.++.-|-.+| .++
T Consensus 633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~-slRfHPLAadvLa~asyd~Ti~lWDl~~~~ 711 (1012)
T KOG1445|consen 633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT-SLRFHPLAADVLAVASYDSTIELWDLANAK 711 (1012)
T ss_pred cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE-EEEecchhhhHhhhhhccceeeeeehhhhh
Confidence 44443 44678888788766555 331 11111 1223344 677764 22345555545555555 454
Q ss_pred -eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-----
Q 017520 148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA----- 221 (370)
Q Consensus 148 -~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p----- 221 (370)
...+... . ..+.+++++++|+...+.- .+|+|.+|+|.++...+.-. ..|
T Consensus 712 ~~~~l~gH-t----dqIf~~AWSpdGr~~AtVc-----------------KDg~~rVy~Prs~e~pv~Eg--~gpvgtRg 767 (1012)
T KOG1445|consen 712 LYSRLVGH-T----DQIFGIAWSPDGRRIATVC-----------------KDGTLRVYEPRSREQPVYEG--KGPVGTRG 767 (1012)
T ss_pred hhheeccC-c----CceeEEEECCCCcceeeee-----------------cCceEEEeCCCCCCCccccC--CCCccCcc
Confidence 2222221 1 2567899999998776642 56899999998665443321 222
Q ss_pred cceEEccCCCEEEEEeCCc-----EEEEEe
Q 017520 222 NGVALSRDEDYVVVCESWK-----CRKYWL 246 (370)
Q Consensus 222 ~gi~~~~dg~~l~v~~~~~-----l~~~~~ 246 (370)
.-|.|.-||+.++++.... |..|+.
T Consensus 768 ARi~wacdgr~viv~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 768 ARILWACDGRIVIVVGFDKSSERQVQMYDA 797 (1012)
T ss_pred eeEEEEecCcEEEEecccccchhhhhhhhh
Confidence 2356667777766666543 556654
No 281
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=85.95 E-value=25 Score=31.33 Aligned_cols=151 Identities=14% Similarity=0.064 Sum_probs=78.1
Q ss_pred CCcceEEcCCCcEEEEe----cCCeEEEEe-CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc---CCC-eEE
Q 017520 80 HPEDASMDKNGVIYTAT----RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS---EDG-VEN 150 (370)
Q Consensus 80 ~P~~i~~d~~G~l~v~~----~~g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~---~~g-~~~ 150 (370)
.+++.++.++|..+..- ....|+... ++...... ...... ...+|++|.+|+.+......++. .+| ...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~-~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLT-RPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccc-cccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 57788998888654332 334566666 55444433 222333 66789999999997654333322 344 222
Q ss_pred EEeecCCcccccccceEEcCCCc--EEEEeCCCCCCCccceecccccCCCceEEEE--eCC-CC-------eEEEEecCC
Q 017520 151 FLSYVNGSKLRFANDVVEASDGS--LYFTVSSSKYLPHEYCLDILEGKPHGQLLKY--DPS-SN-------ITTLVADGF 218 (370)
Q Consensus 151 ~~~~~~g~~~~~~~~l~~d~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~--d~~-t~-------~~~~~~~~~ 218 (370)
..-...... ..+..|.+++||. .++.... ..++|+.- ..+ .+ ..+......
T Consensus 103 ~~v~~~~~~-~~I~~l~vSpDG~RvA~v~~~~----------------~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 103 VEVDWPGLR-GRITALRVSPDGTRVAVVVEDG----------------GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred EEecccccC-CceEEEEECCCCcEEEEEEecC----------------CCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 111111110 1577899999994 3344221 22344432 111 12 011111223
Q ss_pred CCccceEEccCCCEEEEEeCCc--EEE-EEeCCC
Q 017520 219 YFANGVALSRDEDYVVVCESWK--CRK-YWLKGE 249 (370)
Q Consensus 219 ~~p~gi~~~~dg~~l~v~~~~~--l~~-~~~~~~ 249 (370)
.....++|..++..++.+...+ +.. +.+++.
T Consensus 166 ~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~ 199 (253)
T PF10647_consen 166 SDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGG 199 (253)
T ss_pred CcceeeeecCCCEEEEEeCCCCCceeEEEEccCC
Confidence 4456789999988555555544 555 555553
No 282
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=85.88 E-value=31 Score=33.89 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=54.9
Q ss_pred cEEEEecCCeEEEEe-CCeEEEEE-ecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecCCcccccccce
Q 017520 91 VIYTATRDGWIKRLQ-DGTWVNWK-FIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDV 166 (370)
Q Consensus 91 ~l~v~~~~g~I~~~~-~g~~~~~~-~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l 166 (370)
.+.+.+.||++..++ .|+++... ..++... +-...+||.-+++....|+.++. ++| ++...-. .+ ..+..+
T Consensus 77 ~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~-~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q-~~---~~v~c~ 151 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSARVERSISAHAAAIS-SGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQ-NE---ESIRCA 151 (737)
T ss_pred eEEEEcCCceEEEecccchhhhhhhhhhhhhh-hcccCCCCceeeeecCCceEEEEeccchHHHHHhh-cC---ceeEEE
Confidence 455677899998888 77776543 3445555 66777899866666567888888 888 4432111 11 356677
Q ss_pred EEcCCC-cEEEEeC
Q 017520 167 VEASDG-SLYFTVS 179 (370)
Q Consensus 167 ~~d~~G-~l~v~d~ 179 (370)
+.+|+. ++.++..
T Consensus 152 ~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQG 165 (737)
T ss_pred EECCCCCceEEecC
Confidence 888865 5666643
No 283
>smart00284 OLF Olfactomedin-like domains.
Probab=85.59 E-value=26 Score=31.24 Aligned_cols=148 Identities=15% Similarity=0.169 Sum_probs=78.0
Q ss_pred cCCCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEE--EecC-----------C-CceeceEEcCCCcEEEE---eCC
Q 017520 78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNW--KFID-----------S-QTLVGLTSTKEGHLIIC---DNA 137 (370)
Q Consensus 78 ~~~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~--~~~~-----------~-~p~~gl~~d~~G~L~v~---~~~ 137 (370)
+.|...+.. +|.+|.-- ....|.|++ .+.+... .+.. + .-. .+++|.. .|||. ...
T Consensus 74 ~~GtG~VVY--ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdi-DlAvDE~-GLWvIYat~~~ 149 (255)
T smart00284 74 GQGTGVVVY--NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDI-DLAVDEN-GLWVIYATEQN 149 (255)
T ss_pred cccccEEEE--CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccE-EEEEcCC-ceEEEEeccCC
Confidence 456666666 48888754 345799999 4443321 1111 1 113 5788754 46654 223
Q ss_pred Cc-e--EEEcCCC--eEEEEeecCCcccccccc-eEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE
Q 017520 138 NG-L--HKVSEDG--VENFLSYVNGSKLRFAND-VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT 211 (370)
Q Consensus 138 ~g-i--~~~~~~g--~~~~~~~~~g~~~~~~~~-l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~ 211 (370)
.| | -++++.- ++......-..+ ..-+. |++ |.||++++... ....--+.||..+++-
T Consensus 150 ~g~ivvSkLnp~tL~ve~tW~T~~~k~-sa~naFmvC---GvLY~~~s~~~-------------~~~~I~yayDt~t~~~ 212 (255)
T smart00284 150 AGKIVISKLNPATLTIENTWITTYNKR-SASNAFMIC---GILYVTRSLGS-------------KGEKVFYAYDTNTGKE 212 (255)
T ss_pred CCCEEEEeeCcccceEEEEEEcCCCcc-cccccEEEe---eEEEEEccCCC-------------CCcEEEEEEECCCCcc
Confidence 34 3 3566433 333222211111 11122 333 89999975210 1222356788876654
Q ss_pred EEEecC----CCCccceEEccCCCEEEEEeCCcEEEEEe
Q 017520 212 TLVADG----FYFANGVALSRDEDYVVVCESWKCRKYWL 246 (370)
Q Consensus 212 ~~~~~~----~~~p~gi~~~~dg~~l~v~~~~~l~~~~~ 246 (370)
..+.-. ......+...|..+.||+-+.+.+..|++
T Consensus 213 ~~~~i~f~n~y~~~s~l~YNP~d~~LY~wdng~~l~Y~v 251 (255)
T smart00284 213 GHLDIPFENMYEYISMLDYNPNDRKLYAWNNGHLVHYDI 251 (255)
T ss_pred ceeeeeeccccccceeceeCCCCCeEEEEeCCeEEEEEE
Confidence 332111 22334578889888899999887777765
No 284
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.59 E-value=39 Score=33.28 Aligned_cols=105 Identities=11% Similarity=0.116 Sum_probs=65.6
Q ss_pred EEEEecCCeEEEEe--CCeEEEEEecCCCc---eeceE-EcCCCcEEEEeCCCceEEEc-CCC--eEEEEeecCCccccc
Q 017520 92 IYTATRDGWIKRLQ--DGTWVNWKFIDSQT---LVGLT-STKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRF 162 (370)
Q Consensus 92 l~v~~~~g~I~~~~--~g~~~~~~~~~~~p---~~gl~-~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~~~~g~~~~~ 162 (370)
+..|+..|.|+-++ .|+++.....+..+ . .+. -+.-|.+|-++.+..+..++ ..+ +... . .+ ...
T Consensus 73 lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~-~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~-~--~~--~~~ 146 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVN-EILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW-K--EQ--KPL 146 (541)
T ss_pred EEeecCCccEEEEEecCCeEEEEEecCCCCCcce-eeecccccCceEecCCceeEEEEecccceeeeee-c--cC--CCc
Confidence 44566777788777 66666555433322 2 222 12345677776666677777 444 2222 1 11 135
Q ss_pred ccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc
Q 017520 163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA 221 (370)
Q Consensus 163 ~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p 221 (370)
+..+++.+||.+..+-+ +.|-.||.+++++-..+++...|
T Consensus 147 ~~sl~is~D~~~l~~as-------------------~~ik~~~~~~kevv~~ftgh~s~ 186 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTAS-------------------RQIKVLDIETKEVVITFTGHGSP 186 (541)
T ss_pred cceEEEcCCCCEEEecc-------------------ceEEEEEccCceEEEEecCCCcc
Confidence 67899999998877733 57888998888887777776655
No 285
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.57 E-value=29 Score=31.72 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=53.3
Q ss_pred cEEEEecCCeEEEEeCCeEEE---EEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCCeEEEEeecCCcccccccc
Q 017520 91 VIYTATRDGWIKRLQDGTWVN---WKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDGVENFLSYVNGSKLRFAND 165 (370)
Q Consensus 91 ~l~v~~~~g~I~~~~~g~~~~---~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g~~~~~~~~~g~~~~~~~~ 165 (370)
.|..+..||.|..|+.|.++. +....++.. ++++.|.|.|-++-.+.+.++.. -.|...+.-... +.+..
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt-~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~----~~at~ 173 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVT-DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK----NKATL 173 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeecccccccc-eeEecCCCceEEEEcCCceeeeehhhcCccceeeccC----Cccee
Confidence 678888899999999665543 334556778 99999999998876666666655 344111111111 12334
Q ss_pred eEEcCCCc-EEEE
Q 017520 166 VVEASDGS-LYFT 177 (370)
Q Consensus 166 l~~d~~G~-l~v~ 177 (370)
+.++++|. +++.
T Consensus 174 v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 174 VSWSPQGDHFVVS 186 (362)
T ss_pred eEEcCCCCEEEEE
Confidence 78889996 6555
No 286
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.56 E-value=4.1 Score=24.51 Aligned_cols=37 Identities=5% Similarity=0.141 Sum_probs=25.6
Q ss_pred CCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEc
Q 017520 89 NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTST 126 (370)
Q Consensus 89 ~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d 126 (370)
.+.||+++ ..+.|..++ +++...-...+..|. +++++
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~-~i~~~ 42 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPF-GVAVS 42 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCc-eEEeC
Confidence 34699988 577899998 555544445566787 77764
No 287
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.34 E-value=43 Score=33.56 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=19.6
Q ss_pred CCcceEEcCCCcEEEEecCCeEEEEe
Q 017520 80 HPEDASMDKNGVIYTATRDGWIKRLQ 105 (370)
Q Consensus 80 ~P~~i~~d~~G~l~v~~~~g~I~~~~ 105 (370)
.|..++..|+|+..+...+|.-..+.
T Consensus 353 yPq~L~hsPNGrfV~VcgdGEyiIyT 378 (794)
T KOG0276|consen 353 YPQTLAHSPNGRFVVVCGDGEYIIYT 378 (794)
T ss_pred chHHhccCCCCcEEEEecCccEEEEE
Confidence 68889999999888877777544443
No 288
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=85.26 E-value=30 Score=33.60 Aligned_cols=133 Identities=15% Similarity=0.091 Sum_probs=69.4
Q ss_pred cCCeEEEEe--CC-eEEEEEecCCCceeceEEcCCC-cEEEEeCCCceEEEc-CCC-eEEEEeecCCccccc-ccceEEc
Q 017520 97 RDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEG-HLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRF-ANDVVEA 169 (370)
Q Consensus 97 ~~g~I~~~~--~g-~~~~~~~~~~~p~~gl~~d~~G-~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~-~~~l~~d 169 (370)
..|.|.... ++ +...+....+...--+.+.+.- .|+....+.|++.+. -+| ...+ .. ...... ..+|++.
T Consensus 141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~-~~--~~~HsAP~~gicfs 217 (673)
T KOG4378|consen 141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF-HA--SEAHSAPCRGICFS 217 (673)
T ss_pred cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc-ch--hhhccCCcCcceec
Confidence 445555554 22 2333433333221034555444 344444456665554 455 2221 10 011112 3578998
Q ss_pred CCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-cceEEccCCCEEEEEeCCc-EEEEEe
Q 017520 170 SDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVVVCESWK-CRKYWL 246 (370)
Q Consensus 170 ~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-~gi~~~~dg~~l~v~~~~~-l~~~~~ 246 (370)
|... |+++.. -+-+|+.||..++....-... ..| ..++|.++|..|......+ |+.||+
T Consensus 218 psne~l~vsVG-----------------~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 218 PSNEALLVSVG-----------------YDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred CCccceEEEec-----------------ccceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEec
Confidence 8764 555533 235789999764433211111 123 4689999998777666666 999999
Q ss_pred CCCC
Q 017520 247 KGER 250 (370)
Q Consensus 247 ~~~~ 250 (370)
.+.+
T Consensus 280 R~~k 283 (673)
T KOG4378|consen 280 RSTK 283 (673)
T ss_pred ccCC
Confidence 7653
No 289
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=84.01 E-value=33 Score=31.14 Aligned_cols=135 Identities=10% Similarity=0.049 Sum_probs=77.5
Q ss_pred ceEEcCC-CcEEEEeCCCceEEEc-C-CCe-EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCC
Q 017520 122 GLTSTKE-GHLIICDNANGLHKVS-E-DGV-ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 197 (370)
Q Consensus 122 gl~~d~~-G~L~v~~~~~gi~~~~-~-~g~-~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~ 197 (370)
.+.|++. +.|.++.|++-+..++ + +.. ..+.. +. -+-+.++.++-++|+++.
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~---~~---plL~c~F~d~~~~~~G~~------------------ 73 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH---GA---PLLDCAFADESTIVTGGL------------------ 73 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec---CC---ceeeeeccCCceEEEecc------------------
Confidence 6778754 4688888876666666 2 222 22211 11 233557767778888853
Q ss_pred CceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-
Q 017520 198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT- 275 (370)
Q Consensus 198 ~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~- 275 (370)
+|.|.++|..++....+...-.....|......+.++-+..++ |..+|+... ........+ -.-.+.|-.|+
T Consensus 74 dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~----~~~~~~d~~--kkVy~~~v~g~~ 147 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK----VVVGTFDQG--KKVYCMDVSGNR 147 (323)
T ss_pred CceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc----ccccccccC--ceEEEEeccCCE
Confidence 4889999999888777666555566777776555344444455 777775431 000000111 12244566664
Q ss_pred EEEEEecCchh
Q 017520 276 FWIAIIKLDAR 286 (370)
Q Consensus 276 lwv~~~~~~~~ 286 (370)
|.||+.+....
T Consensus 148 LvVg~~~r~v~ 158 (323)
T KOG1036|consen 148 LVVGTSDRKVL 158 (323)
T ss_pred EEEeecCceEE
Confidence 66667765433
No 290
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=83.12 E-value=2.5 Score=24.03 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=16.7
Q ss_pred CCCcEEEEecCCeEEEEe--CCeEE
Q 017520 88 KNGVIYTATRDGWIKRLQ--DGTWV 110 (370)
Q Consensus 88 ~~G~l~v~~~~g~I~~~~--~g~~~ 110 (370)
.+|.+|+++.+|.++.++ +|+..
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEE
Confidence 456788888888888888 56543
No 291
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=82.98 E-value=19 Score=27.54 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=48.8
Q ss_pred CCCcceEEcCCCcEEEEe--cCCeEEEEe-CCeEEEEEecCC-CceeceEEc-CCCc-EEEEeCCCceEEEcCCCeEEEE
Q 017520 79 NHPEDASMDKNGVIYTAT--RDGWIKRLQ-DGTWVNWKFIDS-QTLVGLTST-KEGH-LIICDNANGLHKVSEDGVENFL 152 (370)
Q Consensus 79 ~~P~~i~~d~~G~l~v~~--~~g~I~~~~-~g~~~~~~~~~~-~p~~gl~~d-~~G~-L~v~~~~~gi~~~~~~g~~~~~ 152 (370)
..|.-+..+++|+.+.++ ..+++..|- +..++++...++ +|.=-+..+ +.+. .-|-....|.+++. +.
T Consensus 4 isPSYvy~~sng~~~ass~g~~~g~nvFyYDsti~RI~TCc~vrP~Y~v~~~D~~~~sf~I~kn~dG~~~Ft------~~ 77 (123)
T PF11763_consen 4 ISPSYVYLNSNGYMIASSNGDPEGENVFYYDSTIKRIVTCCCVRPIYRVYHDDPNKSSFNIIKNNDGTYQFT------FV 77 (123)
T ss_pred cccceEEEcCCCcEEeeccCCcCceeeEEecCCcceEEEecccccEEEEeecCCCcceEEEEecCCCcEEEE------Ec
Confidence 368888999999999887 333466665 666666655543 443012222 1121 11111112222221 11
Q ss_pred eecCCcccccccceEEcCCCcEEEEeC
Q 017520 153 SYVNGSKLRFANDVVEASDGSLYFTVS 179 (370)
Q Consensus 153 ~~~~g~~~~~~~~l~~d~~G~l~v~d~ 179 (370)
. .....+-.+.+..+|++||+..
T Consensus 78 e----~~~~ep~~l~~l~dgri~~ts~ 100 (123)
T PF11763_consen 78 E----SSFSEPLDLHTLSDGRIWFTSN 100 (123)
T ss_pred c----cCCCCcEEEEEecCCcEEEEcc
Confidence 1 1123566788889999999964
No 292
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=82.86 E-value=69 Score=34.27 Aligned_cols=178 Identities=16% Similarity=0.171 Sum_probs=101.0
Q ss_pred CCcceEEc-CCCcEEEEe-cCCeEEEEe-CCeEEEE--EecCCCceeceEEcC-CCcEEEEeCCCceEEEc-CCC-e-EE
Q 017520 80 HPEDASMD-KNGVIYTAT-RDGWIKRLQ-DGTWVNW--KFIDSQTLVGLTSTK-EGHLIICDNANGLHKVS-EDG-V-EN 150 (370)
Q Consensus 80 ~P~~i~~d-~~G~l~v~~-~~g~I~~~~-~g~~~~~--~~~~~~p~~gl~~d~-~G~L~v~~~~~gi~~~~-~~g-~-~~ 150 (370)
.+..+.+| .++.+|..+ ....|.+.. ++..... ....-.+. ++++|. .+++|..|.......+. .+| . ..
T Consensus 438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~-~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~v 516 (877)
T KOG1215|consen 438 NAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPE-GLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKV 516 (877)
T ss_pred cceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccC-cEEEEeccCCceecccCCceeEEEEccCCceeE
Confidence 34344444 355777777 566677776 4443322 22233567 899985 45799988764333333 455 3 33
Q ss_pred EEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-ecCCCCccceEEcc
Q 017520 151 FLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSR 228 (370)
Q Consensus 151 ~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~p~gi~~~~ 228 (370)
++... +..+..+++++ .|.+|.++... ..++-|-..+......+ ..+...|+|++++-
T Consensus 517 l~~~~----l~~~r~~~v~p~~g~~~wtd~~~----------------~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~ 576 (877)
T KOG1215|consen 517 LVSKD----LDLPRSIAVDPEKGLMFWTDWGQ----------------PPRIERASLDGSERAVLVTNGILWPNGLTIDY 576 (877)
T ss_pred EEecC----CCCccceeeccccCeeEEecCCC----------------CchhhhhcCCCCCceEEEeCCccCCCcceEEe
Confidence 33221 13577889998 57888888641 11344444443333333 34478999999998
Q ss_pred CCCEEEEEeCCc---EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520 229 DEDYVVVCESWK---CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 282 (370)
Q Consensus 229 dg~~l~v~~~~~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 282 (370)
..+.+||.+... +.+.+.++.. .+.........|..+.+-.+ ++|-....
T Consensus 577 ~~~~~yw~d~~~~~~i~~~~~~g~~---r~~~~~~~~~~p~~~~~~~~-~iyw~d~~ 629 (877)
T KOG1215|consen 577 ETDRLYWADAKLDYTIESANMDGQN---RRVVDSEDLPHPFGLSVFED-YIYWTDWS 629 (877)
T ss_pred ecceeEEEcccCCcceeeeecCCCc---eEEeccccCCCceEEEEecc-eeEEeecc
Confidence 777799998765 6777766642 21122222234666666443 34444433
No 293
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=82.70 E-value=38 Score=30.81 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=35.2
Q ss_pred CCCccceEEccCCCEEEEEeCCcEEEEEeCCCCCCceeeec-cCCCCCCCceeECCCCCEEEEEe
Q 017520 218 FYFANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAII 281 (370)
Q Consensus 218 ~~~p~gi~~~~dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~~~~g~p~~i~~d~~G~lwv~~~ 281 (370)
.+..|.|+|.|....+.-+...+.+.||=+..+ .+... +..+.-..--.+..+|.+|+=..
T Consensus 251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 566789999998776666666666666632211 11111 12332233345788998876543
No 294
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=82.25 E-value=1.2 Score=26.79 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=15.8
Q ss_pred cccceEEcCCCcEEEEeC
Q 017520 162 FANDVVEASDGSLYFTVS 179 (370)
Q Consensus 162 ~~~~l~~d~~G~l~v~d~ 179 (370)
.+++|++|++|++|++-.
T Consensus 14 ~~~~IavD~~GNiYv~G~ 31 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGY 31 (38)
T ss_pred eEEEEEECCCCCEEEEEe
Confidence 578999999999999954
No 295
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=82.09 E-value=54 Score=32.19 Aligned_cols=176 Identities=10% Similarity=0.059 Sum_probs=94.1
Q ss_pred CCCcceEEcCCC-cEEEEecCCeEEEEe--C-CeEEEEEe-cCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC---e
Q 017520 79 NHPEDASMDKNG-VIYTATRDGWIKRLQ--D-GTWVNWKF-IDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG---V 148 (370)
Q Consensus 79 ~~P~~i~~d~~G-~l~v~~~~g~I~~~~--~-g~~~~~~~-~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g---~ 148 (370)
..+.++..+++| .|-+|+.+|.|..+| . .+.+.+.. ...+.- .++.. +.++.+... ..|...+ +.. .
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg-~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVG-SLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeE-EEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 467778888776 466888889888888 2 23333332 233333 44543 555554333 3455555 332 2
Q ss_pred EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE-EEecCCCCccceEEc
Q 017520 149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADGFYFANGVALS 227 (370)
Q Consensus 149 ~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~-~~~~~~~~p~gi~~~ 227 (370)
.. ..+. -..+.++.+.+||+...+-. .++.+..+|..+.... .+.........++|+
T Consensus 295 ~~----~~~H-~qeVCgLkws~d~~~lASGg-----------------nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awc 352 (484)
T KOG0305|consen 295 ST----LQGH-RQEVCGLKWSPDGNQLASGG-----------------NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWC 352 (484)
T ss_pred hh----hhcc-cceeeeeEECCCCCeeccCC-----------------CccceEeccCCCccccEEEeccceeeeEeeeC
Confidence 21 1111 13678899999988665532 3467778876433322 222223344578888
Q ss_pred cCCCEEEEEeCCc---EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520 228 RDEDYVVVCESWK---CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 282 (370)
Q Consensus 228 ~dg~~l~v~~~~~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 282 (370)
|-...|+.+..+. .++||-.- .+....-.+ ..+...++...+..+=.+++.+
T Consensus 353 P~q~~lLAsGGGs~D~~i~fwn~~--~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 353 PWQSGLLATGGGSADRCIKFWNTN--TGARIDSVD-TGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred CCccCceEEcCCCcccEEEEEEcC--CCcEecccc-cCCceeeEEEcCCCCEEEEecC
Confidence 8666577766554 56665221 122111111 2234566777776654455443
No 296
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=81.91 E-value=55 Score=32.15 Aligned_cols=146 Identities=8% Similarity=0.010 Sum_probs=79.7
Q ss_pred cCCCceeceEEcCCCcEEEEeCCC-ceEEEcCC--C-eEEEEeecCCcccccccceEEcCC-CcEEEEeCCCCCCCccce
Q 017520 115 IDSQTLVGLTSTKEGHLIICDNAN-GLHKVSED--G-VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYC 189 (370)
Q Consensus 115 ~~~~p~~gl~~d~~G~L~v~~~~~-gi~~~~~~--g-~~~~~~~~~g~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~ 189 (370)
...... |+.+.+|++........ .++.++.. . ...+... ...+..+++.|- ..|..+-.+
T Consensus 300 H~qeVC-gLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H-----~aAVKA~awcP~q~~lLAsGGG--------- 364 (484)
T KOG0305|consen 300 HRQEVC-GLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH-----TAAVKALAWCPWQSGLLATGGG--------- 364 (484)
T ss_pred ccceee-eeEECCCCCeeccCCCccceEeccCCCccccEEEecc-----ceeeeEeeeCCCccCceEEcCC---------
Confidence 344567 99999999888765443 45555532 2 2222221 135677888873 355554332
Q ss_pred ecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc---EEEEEeCCCCCCceeeeccCCCCCCC
Q 017520 190 LDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK---CRKYWLKGERKGKLETFAENLPGAPD 266 (370)
Q Consensus 190 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~---l~~~~~~~~~~~~~~~~~~~~~g~p~ 266 (370)
..+..|.-+|..++....-.......-.+.+++..+.+..+--.. |..|..... .....+. ......-
T Consensus 365 ------s~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~--~~~~~l~-gH~~RVl 435 (484)
T KOG0305|consen 365 ------SADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM--KLVAELL-GHTSRVL 435 (484)
T ss_pred ------CcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc--ceeeeec-CCcceeE
Confidence 245677778887776543334445566788999988777775433 444443221 1111111 1111122
Q ss_pred ceeECCCCC-EEEEEecCc
Q 017520 267 NINLAPDGT-FWIAIIKLD 284 (370)
Q Consensus 267 ~i~~d~~G~-lwv~~~~~~ 284 (370)
-++..+||. +-++.....
T Consensus 436 ~la~SPdg~~i~t~a~DET 454 (484)
T KOG0305|consen 436 YLALSPDGETIVTGAADET 454 (484)
T ss_pred EEEECCCCCEEEEecccCc
Confidence 256788885 555554443
No 297
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=81.75 E-value=35 Score=31.91 Aligned_cols=117 Identities=16% Similarity=0.163 Sum_probs=68.7
Q ss_pred CCceeceEEcC--CCcEEEEeCCCceEEEc-CCC-eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceec
Q 017520 117 SQTLVGLTSTK--EGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLD 191 (370)
Q Consensus 117 ~~p~~gl~~d~--~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~ 191 (370)
+..+ ||.+++ .|.|.-+|-..+|+... .+| +.+=...+.+ .-.++.+|..+|.- .++++.+
T Consensus 212 ~EGy-~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS------------ 277 (440)
T KOG0302|consen 212 GEGY-GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCS------------ 277 (440)
T ss_pred ccce-eeecccccccccccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeee------------
Confidence 4456 777765 67788777666777777 456 4432222223 23578899998854 5777754
Q ss_pred ccccCCCceEEEEeCCCCeE--EEEec-CCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCC
Q 017520 192 ILEGKPHGQLLKYDPSSNIT--TLVAD-GFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKG 252 (370)
Q Consensus 192 ~~~~~~~g~l~~~d~~t~~~--~~~~~-~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~ 252 (370)
.++.|..+|...+.. .+... .-.-.|-|.++.+..+|......+ +..+|+..-+.+
T Consensus 278 -----~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~ 337 (440)
T KOG0302|consen 278 -----CDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG 337 (440)
T ss_pred -----cCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC
Confidence 567777777654421 11111 122457788888777444444445 777777654433
No 298
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=81.72 E-value=13 Score=34.82 Aligned_cols=108 Identities=12% Similarity=0.191 Sum_probs=58.8
Q ss_pred CceeceEEcCCCc-EEEEeCCCce--EEEcCC--CeEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceec
Q 017520 118 QTLVGLTSTKEGH-LIICDNANGL--HKVSED--GVENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLD 191 (370)
Q Consensus 118 ~p~~gl~~d~~G~-L~v~~~~~gi--~~~~~~--g~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~ 191 (370)
.+. .....++|+ |++++...+. +.+..+ +.+ +....... ..++.+.+..+. .+-++|..
T Consensus 64 a~~-~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~k-l~~~~~v~--~~~~ai~~~~~~~sv~v~dka----------- 128 (390)
T KOG3914|consen 64 APA-LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAK-LLDVSCVP--KRPTAISFIREDTSVLVADKA----------- 128 (390)
T ss_pred ccc-ccccCCCceEEEEEeCCCceEEEEEecCCCcce-eeeEeecc--cCcceeeeeeccceEEEEeec-----------
Confidence 344 455556676 4555555554 333321 222 11111111 245556555443 46666542
Q ss_pred ccccCCCceEEEEeC---CCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeC
Q 017520 192 ILEGKPHGQLLKYDP---SSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLK 247 (370)
Q Consensus 192 ~~~~~~~g~l~~~d~---~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~ 247 (370)
|-++.+|. +.+..+.....+..-..+++++|.++++.++... |++.+..
T Consensus 129 -------gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp 181 (390)
T KOG3914|consen 129 -------GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP 181 (390)
T ss_pred -------CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecC
Confidence 44555543 2244455555566667899999999999999988 6655543
No 299
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=81.27 E-value=1.3 Score=26.72 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=14.5
Q ss_pred CCcceEEcCCCcEEEEe
Q 017520 80 HPEDASMDKNGVIYTAT 96 (370)
Q Consensus 80 ~P~~i~~d~~G~l~v~~ 96 (370)
.+.+|++|++|++|++-
T Consensus 14 ~~~~IavD~~GNiYv~G 30 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTG 30 (38)
T ss_pred eEEEEEECCCCCEEEEE
Confidence 58889999999999764
No 300
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=80.60 E-value=75 Score=32.92 Aligned_cols=145 Identities=10% Similarity=-0.007 Sum_probs=76.0
Q ss_pred CcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEe------cCCCceeceEEcCCCcEEEEe-CCCceEEEcCCCe--E
Q 017520 81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKF------IDSQTLVGLTSTKEGHLIICD-NANGLHKVSEDGV--E 149 (370)
Q Consensus 81 P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~------~~~~p~~gl~~d~~G~L~v~~-~~~gi~~~~~~g~--~ 149 (370)
|+.|.....|....-..+-.++.+. .+. +.... ..-... ..++++.++..++. ..++|+.+..-|. .
T Consensus 163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t-~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~ 240 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNIT-CVALSPNERYLAAGDSDGRILVWRDFGSSDD 240 (792)
T ss_pred CccEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccce-eEEeccccceEEEeccCCcEEEEeccccccc
Confidence 7778877777655444455577776 322 11100 000123 56777777755543 3334444432110 0
Q ss_pred EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-cceEEcc
Q 017520 150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSR 228 (370)
Q Consensus 150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-~gi~~~~ 228 (370)
......---....++.+++..+|.-..+-. ..+.+.++..+|++ +.+...+..| -++.+++
T Consensus 241 ~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG-----------------~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ 302 (792)
T KOG1963|consen 241 SETCTLLHWHHDEVNSLSFSSDGAYLLSGG-----------------REGVLVLWQLETGK-KQFLPRLGSPILHIVVSP 302 (792)
T ss_pred cccceEEEecccccceeEEecCCceEeecc-----------------cceEEEEEeecCCC-cccccccCCeeEEEEEcC
Confidence 000000000113578899999985333321 34667778778777 5556666555 6899999
Q ss_pred CCCEEEEEeCCc-EEEEE
Q 017520 229 DEDYVVVCESWK-CRKYW 245 (370)
Q Consensus 229 dg~~l~v~~~~~-l~~~~ 245 (370)
|++..-+.-.++ |..+.
T Consensus 303 ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 303 DSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred CCCeEEEEecCceEEEEe
Confidence 998544444444 44443
No 301
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=80.43 E-value=60 Score=34.73 Aligned_cols=150 Identities=15% Similarity=0.179 Sum_probs=91.1
Q ss_pred EecCCCcCCCcceEEcC-CCcEEEEe-cCCeEEEEe-CCeEE-EEEec-CCCceeceEEcC-CCcEEEEeCCC--ceEEE
Q 017520 72 KVGEGSVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGTWV-NWKFI-DSQTLVGLTSTK-EGHLIICDNAN--GLHKV 143 (370)
Q Consensus 72 ~~~~~~~~~P~~i~~d~-~G~l~v~~-~~g~I~~~~-~g~~~-~~~~~-~~~p~~gl~~d~-~G~L~v~~~~~--gi~~~ 143 (370)
....| .-.|+++++|- .+++|..+ ....+...+ +|... ++... ...|. .+++++ .|.+|+.+++. .+.+-
T Consensus 474 ~~~~g-~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r-~~~v~p~~g~~~wtd~~~~~~i~ra 551 (877)
T KOG1215|consen 474 LCGDG-LCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPR-SIAVDPEKGLMFWTDWGQPPRIERA 551 (877)
T ss_pred EeccC-ccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEecCCCCcc-ceeeccccCeeEEecCCCCchhhhh
Confidence 34444 57899999995 67899988 444455555 55432 22222 25677 889987 55688888764 23333
Q ss_pred cCCC--eEEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE-EEecCCC
Q 017520 144 SEDG--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADGFY 219 (370)
Q Consensus 144 ~~~g--~~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~-~~~~~~~ 219 (370)
..+| ...+... + ...+++++.|- +..+|..|.- ....+...+.+++..+ .......
T Consensus 552 ~~dg~~~~~l~~~--~--~~~p~glt~d~~~~~~yw~d~~----------------~~~~i~~~~~~g~~r~~~~~~~~~ 611 (877)
T KOG1215|consen 552 SLDGSERAVLVTN--G--ILWPNGLTIDYETDRLYWADAK----------------LDYTIESANMDGQNRRVVDSEDLP 611 (877)
T ss_pred cCCCCCceEEEeC--C--ccCCCcceEEeecceeEEEccc----------------CCcceeeeecCCCceEEeccccCC
Confidence 3456 4444332 1 45789999985 5689988863 1123555555544433 3344566
Q ss_pred CccceEEccCCCEEEEEeCCc--EEEEE
Q 017520 220 FANGVALSRDEDYVVVCESWK--CRKYW 245 (370)
Q Consensus 220 ~p~gi~~~~dg~~l~v~~~~~--l~~~~ 245 (370)
.|.++++..+ .+|+++... +.+..
T Consensus 612 ~p~~~~~~~~--~iyw~d~~~~~~~~~~ 637 (877)
T KOG1215|consen 612 HPFGLSVFED--YIYWTDWSNRAISRAE 637 (877)
T ss_pred CceEEEEecc--eeEEeeccccceEeee
Confidence 7777776644 488888766 44444
No 302
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=80.32 E-value=4 Score=42.38 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=49.1
Q ss_pred CcceEEcCCCcEEEEecCCeEEEEe-CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc
Q 017520 81 PEDASMDKNGVIYTATRDGWIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS 144 (370)
Q Consensus 81 P~~i~~d~~G~l~v~~~~g~I~~~~-~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~ 144 (370)
=.|++-+.+|+|-||+..|.|.-|+ .|+ .++..+..|.|..+|.++.||+-.+|....-|+.++
T Consensus 580 Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 580 FSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred ceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 3567888999999999999999999 443 444455567777699999999988877665566665
No 303
>PHA02790 Kelch-like protein; Provisional
Probab=80.10 E-value=64 Score=31.78 Aligned_cols=62 Identities=6% Similarity=0.003 Sum_probs=35.4
Q ss_pred CCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCcc-c-eEEccCCCEEEEEeCC----c-EE
Q 017520 170 SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN-G-VALSRDEDYVVVCESW----K-CR 242 (370)
Q Consensus 170 ~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~-g-i~~~~dg~~l~v~~~~----~-l~ 242 (370)
-+|.||+.-... ....+.+||+.++++..+. .+..+. + .+..-+|+ +|+..-. . +.
T Consensus 317 ~~~~iYviGG~~---------------~~~sve~ydp~~n~W~~~~-~l~~~r~~~~~~~~~g~-IYviGG~~~~~~~ve 379 (480)
T PHA02790 317 ANNKLYVVGGLP---------------NPTSVERWFHGDAAWVNMP-SLLKPRCNPAVASINNV-IYVIGGHSETDTTTE 379 (480)
T ss_pred ECCEEEEECCcC---------------CCCceEEEECCCCeEEECC-CCCCCCcccEEEEECCE-EEEecCcCCCCccEE
Confidence 578999884320 1245889999888776543 232221 2 12223454 8886431 2 77
Q ss_pred EEEeCC
Q 017520 243 KYWLKG 248 (370)
Q Consensus 243 ~~~~~~ 248 (370)
+||+..
T Consensus 380 ~ydp~~ 385 (480)
T PHA02790 380 YLLPNH 385 (480)
T ss_pred EEeCCC
Confidence 888654
No 304
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=79.54 E-value=43 Score=29.52 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=44.7
Q ss_pred CCcceEEcC-CCcEEEEecCCeEEEEe--CCeEEEE-EecCCCceeceEE-cCCCcEEEEeCCCceEEE-c-CCC
Q 017520 80 HPEDASMDK-NGVIYTATRDGWIKRLQ--DGTWVNW-KFIDSQTLVGLTS-TKEGHLIICDNANGLHKV-S-EDG 147 (370)
Q Consensus 80 ~P~~i~~d~-~G~l~v~~~~g~I~~~~--~g~~~~~-~~~~~~p~~gl~~-d~~G~L~v~~~~~gi~~~-~-~~g 147 (370)
.-..+.+|+ ++.++++..|+.+|.++ +|+++.. .......+ .++- ...+.++-+..+ |-.|+ + +++
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH-~vv~R~~~~qilsG~ED-GtvRvWd~kt~ 188 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH-SVVGRNANGQILSGAED-GTVRVWDTKTQ 188 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee-eeeecccCcceeecCCC-ccEEEEecccc
Confidence 345677884 78888888999999999 8987654 33344455 5555 467788877654 54444 4 566
No 305
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=78.81 E-value=76 Score=31.91 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=30.8
Q ss_pred CCcEEEEecCCeEEEEe-CC-e-------EEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc
Q 017520 89 NGVIYTATRDGWIKRLQ-DG-T-------WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS 144 (370)
Q Consensus 89 ~G~l~v~~~~g~I~~~~-~g-~-------~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~ 144 (370)
...||+++.+|.|..++ .. . +..+....+... .+..-+...++|...+ +.+..++
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAif-Dl~wapge~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIF-DLKWAPGESLLVSASGDSTIRPWD 128 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeE-eeccCCCceeEEEccCCceeeeee
Confidence 44688999899898888 21 1 222333334445 5555563345665444 3455555
No 306
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=77.65 E-value=50 Score=29.17 Aligned_cols=106 Identities=19% Similarity=0.331 Sum_probs=63.1
Q ss_pred CceeceEEcC-CCcEEEEeCCCceEEEc-CCC-eEEEEeecCCcccccccceEE-cCCCcEEEEeCCCCCCCccceeccc
Q 017520 118 QTLVGLTSTK-EGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVE-ASDGSLYFTVSSSKYLPHEYCLDIL 193 (370)
Q Consensus 118 ~p~~gl~~d~-~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~-d~~G~l~v~d~~~~~~~~~~~~~~~ 193 (370)
..+ +|-+|| .+.++.+..+.-++.++ ++| ++... .|.. ..++.++- ...+.|+-+
T Consensus 116 eIN-am~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~---rGHt-DYvH~vv~R~~~~qilsG---------------- 174 (325)
T KOG0649|consen 116 EIN-AMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY---RGHT-DYVHSVVGRNANGQILSG---------------- 174 (325)
T ss_pred ccc-eeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE---cCCc-ceeeeeeecccCcceeec----------------
Confidence 356 888996 45677776556689999 899 55432 2211 24555554 345555433
Q ss_pred ccCCCceEEEEeCCCCeEEEEecCCCCcc------c---eEEccCCCEEEEEeCCc-EEEEEeC
Q 017520 194 EGKPHGQLLKYDPSSNITTLVADGFYFAN------G---VALSRDEDYVVVCESWK-CRKYWLK 247 (370)
Q Consensus 194 ~~~~~g~l~~~d~~t~~~~~~~~~~~~p~------g---i~~~~dg~~l~v~~~~~-l~~~~~~ 247 (370)
..+|.+..+|.+|++..........++ | .+++-+.+ +.++..+- +..|.+.
T Consensus 175 --~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGgGp~lslwhLr 235 (325)
T KOG0649|consen 175 --AEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGGGPKLSLWHLR 235 (325)
T ss_pred --CCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-eEEecCCCceeEEecc
Confidence 356888899998877655554433332 2 35666666 55665554 5555543
No 307
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.00 E-value=64 Score=30.10 Aligned_cols=137 Identities=12% Similarity=0.102 Sum_probs=69.7
Q ss_pred ceEEcCCCcEEEEeCC-CceEEEc-CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCC
Q 017520 122 GLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 197 (370)
Q Consensus 122 gl~~d~~G~L~v~~~~-~gi~~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~ 197 (370)
.+++-|.|+-...... +-|...+ .+| +.++.. .+ ..+.-+.+..||+|..+.+.
T Consensus 198 ~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~----h~-ewvr~v~v~~DGti~As~s~----------------- 255 (406)
T KOG0295|consen 198 SVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPG----HS-EWVRMVRVNQDGTIIASCSN----------------- 255 (406)
T ss_pred eEEEEecCCeeeecccccceeEEecccceeEEeccC----ch-HhEEEEEecCCeeEEEecCC-----------------
Confidence 5666677754443333 4455555 667 555422 21 26677889999999888653
Q ss_pred CceEEEEeCCCCeEEEEecCC-------------CCccceEEcc---CCCEEEEEeCCc-EEEEEeCCCCCCceeeeccC
Q 017520 198 HGQLLKYDPSSNITTLVADGF-------------YFANGVALSR---DEDYVVVCESWK-CRKYWLKGERKGKLETFAEN 260 (370)
Q Consensus 198 ~g~l~~~d~~t~~~~~~~~~~-------------~~p~gi~~~~---dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~ 260 (370)
+.+|..+-..+++........ ..|+--.-.+ .+..+.....++ |..+|+..++- .-.+. .
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c--L~tL~-g 332 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC--LFTLV-G 332 (406)
T ss_pred CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE--EEEEe-c
Confidence 233433333333222111111 1111111111 223445555555 66677655411 11111 2
Q ss_pred CCCCCCceeECCCCCEEEEEecC
Q 017520 261 LPGAPDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 261 ~~g~p~~i~~d~~G~lwv~~~~~ 283 (370)
...-..++++.+.|.+.+++...
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaDD 355 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCADD 355 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEecC
Confidence 33346778999999888887665
No 308
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=76.95 E-value=69 Score=30.42 Aligned_cols=174 Identities=14% Similarity=0.041 Sum_probs=89.2
Q ss_pred CCcCCCcceEEcCCCcEEEEe-cCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEE-Ec-CCC--
Q 017520 76 GSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHK-VS-EDG-- 147 (370)
Q Consensus 76 ~~~~~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~-~~-~~g-- 147 (370)
|.+.+-.++.+|++|+-.++. .++.+..|+ +.. ..++........ .+.+.....-.|........+ .+ ..+
T Consensus 217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt-~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C 295 (459)
T KOG0288|consen 217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVT-AAKFKLSHSRVVSGSADRTIKLWDLQKAYC 295 (459)
T ss_pred ccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhccccccee-eehhhccccceeeccccchhhhhhhhhhhe
Confidence 333446778888887666554 666666666 222 122222223333 444432211123222222222 22 122
Q ss_pred eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEc
Q 017520 148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALS 227 (370)
Q Consensus 148 ~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~ 227 (370)
.+.+ .+....|+|+.. +..++++. .+..|.-||..+...............+.++
T Consensus 296 ~kt~------l~~S~cnDI~~~--~~~~~SgH-----------------~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls 350 (459)
T KOG0288|consen 296 SKTV------LPGSQCNDIVCS--ISDVISGH-----------------FDKKVRFWDIRSADKTRSVPLGGRVTSLDLS 350 (459)
T ss_pred eccc------cccccccceEec--ceeeeecc-----------------cccceEEEeccCCceeeEeecCcceeeEeec
Confidence 2211 122467788775 44555543 3456777886555544333333456778899
Q ss_pred cCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCC-----CCceeECCCCCEEEE
Q 017520 228 RDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGA-----PDNINLAPDGTFWIA 279 (370)
Q Consensus 228 ~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~-----p~~i~~d~~G~lwv~ 279 (370)
.+|..+..+.... +-.+|+.+.. ....|. -+++ -.-..++++|.+..+
T Consensus 351 ~~g~~lLsssRDdtl~viDlRt~e--I~~~~s--A~g~k~asDwtrvvfSpd~~YvaA 404 (459)
T KOG0288|consen 351 MDGLELLSSSRDDTLKVIDLRTKE--IRQTFS--AEGFKCASDWTRVVFSPDGSYVAA 404 (459)
T ss_pred cCCeEEeeecCCCceeeeeccccc--EEEEee--ccccccccccceeEECCCCceeee
Confidence 9999999987777 8888876532 222221 1111 233667887765444
No 309
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=76.76 E-value=1.1e+02 Score=32.87 Aligned_cols=223 Identities=13% Similarity=0.070 Sum_probs=109.3
Q ss_pred cEEEEecCCeEEEEe---C--CeEEEE---Ee-----cCCCceeceEEc---CCCcEEEEeCCCceEEEc-CCCeEEEEe
Q 017520 91 VIYTATRDGWIKRLQ---D--GTWVNW---KF-----IDSQTLVGLTST---KEGHLIICDNANGLHKVS-EDGVENFLS 153 (370)
Q Consensus 91 ~l~v~~~~g~I~~~~---~--g~~~~~---~~-----~~~~p~~gl~~d---~~G~L~v~~~~~gi~~~~-~~g~~~~~~ 153 (370)
-+.+++.||.|..|+ + ++.+.. .. ...+-. |+.+| ..|.|+++. +-.+.++. .+.-....+
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~-~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGT-GLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCC-CeeeehhhhCCeEEecC-CeeEEEEEecccceeEee
Confidence 466777888777776 3 333322 11 112334 66666 467788754 24555555 322111222
Q ss_pred ecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe----EEEEecC--CCCccceEE
Q 017520 154 YVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI----TTLVADG--FYFANGVAL 226 (370)
Q Consensus 154 ~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~----~~~~~~~--~~~p~gi~~ 226 (370)
...+ ....+..|.-|. .|++.++-- .+|.|..||...-. +.+.... .....++.+
T Consensus 1203 iP~~-s~t~vTaLS~~~~~gn~i~AGf-----------------aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl 1264 (1387)
T KOG1517|consen 1203 IPYG-SSTLVTALSADLVHGNIIAAGF-----------------ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL 1264 (1387)
T ss_pred cccC-CCccceeecccccCCceEEEee-----------------cCCceEEeecccCCccccceeecccCCcccceeEEe
Confidence 2111 123455555553 367776632 45777777743211 1111111 111345566
Q ss_pred ccCCCE-EEEEeCCc-EEEEEeCCCCCCceeeeccCC-CC-CCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHH
Q 017520 227 SRDEDY-VVVCESWK-CRKYWLKGERKGKLETFAENL-PG-APDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLA 302 (370)
Q Consensus 227 ~~dg~~-l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~-~g-~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~ 302 (370)
-+.|-. ++-+.+.+ |..+|+..+...++-...... -| --..+.+-++-.+..+...
T Consensus 1265 q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-------------------- 1324 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-------------------- 1324 (1387)
T ss_pred ecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc--------------------
Confidence 665543 55555666 999998764221211111111 01 1223444444444433221
Q ss_pred hCCccccccccCCCceEEEEECCCCcEEEEEeCC---CCCccccceeEEEECCE-EEEEeCCCCeEEEEe
Q 017520 303 AYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDP---TGQLMSFVTSGLQVDNH-LYVISLTSNFIGKVQ 368 (370)
Q Consensus 303 ~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~---~g~~~~~~t~~~~~~g~-L~~gs~~~~~i~~~~ 368 (370)
..+-.|+..|+.+..+... -|+....++++.++..+ +...+...++|.++.
T Consensus 1325 ---------------q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1325 ---------------QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred ---------------ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 2356667777666554332 34445566777777754 444457777887765
No 310
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=76.70 E-value=7.3 Score=23.20 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=17.1
Q ss_pred CcEEEEecCCeEEEEe--CCeEEEEE
Q 017520 90 GVIYTATRDGWIKRLQ--DGTWVNWK 113 (370)
Q Consensus 90 G~l~v~~~~g~I~~~~--~g~~~~~~ 113 (370)
|.+|+++.+|.|+.+| +|+...-.
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEee
Confidence 4678888888888888 67655433
No 311
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=76.63 E-value=12 Score=22.95 Aligned_cols=37 Identities=22% Similarity=0.181 Sum_probs=25.0
Q ss_pred CcEEEEe-cCC-eEEEEe-CCe--EEEEEecCCCceeceEEcC
Q 017520 90 GVIYTAT-RDG-WIKRLQ-DGT--WVNWKFIDSQTLVGLTSTK 127 (370)
Q Consensus 90 G~l~v~~-~~g-~I~~~~-~g~--~~~~~~~~~~p~~gl~~d~ 127 (370)
|+||.++ ... .|.+.+ +|. ...+......|. ||++|+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~-giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPE-GIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEE-EEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcC-EEEECC
Confidence 5788888 455 677777 664 233344567899 999874
No 312
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=76.51 E-value=57 Score=29.24 Aligned_cols=148 Identities=14% Similarity=0.159 Sum_probs=86.4
Q ss_pred CCCcceEEcCC-CcEEE-EecCCeEEEEe-C-C-eEE--EEEec--CCCceeceEEcCCCcEEEEeCCCceEEEc--CCC
Q 017520 79 NHPEDASMDKN-GVIYT-ATRDGWIKRLQ-D-G-TWV--NWKFI--DSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG 147 (370)
Q Consensus 79 ~~P~~i~~d~~-G~l~v-~~~~g~I~~~~-~-g-~~~--~~~~~--~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g 147 (370)
..-.+++..+. |.++. +..+..|..++ . + .+. ..... ..... .++..|.|+++.+........+. .++
T Consensus 15 ~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVR-svAwsp~g~~La~aSFD~t~~Iw~k~~~ 93 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVR-SVAWSPHGRYLASASFDATVVIWKKEDG 93 (312)
T ss_pred CcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheee-eeeecCCCcEEEEeeccceEEEeecCCC
Confidence 34566777775 76544 44666677777 3 2 121 11111 12345 89999999977766566655555 345
Q ss_pred -eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCC-CCeEEE---EecCCCCcc
Q 017520 148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNITTL---VADGFYFAN 222 (370)
Q Consensus 148 -~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-t~~~~~---~~~~~~~p~ 222 (370)
++.+. ..+|.. +.+..+++.++|++..+.+. ...|+.+..+ ..+.+. +.....-..
T Consensus 94 efecv~-~lEGHE-nEVK~Vaws~sG~~LATCSR-----------------DKSVWiWe~deddEfec~aVL~~HtqDVK 154 (312)
T KOG0645|consen 94 EFECVA-TLEGHE-NEVKCVAWSASGNYLATCSR-----------------DKSVWIWEIDEDDEFECIAVLQEHTQDVK 154 (312)
T ss_pred ceeEEe-eeeccc-cceeEEEEcCCCCEEEEeeC-----------------CCeEEEEEecCCCcEEEEeeecccccccc
Confidence 66543 234532 57889999999998888653 2345555433 233332 223344456
Q ss_pred ceEEccCCCEEEEEeCCc-EEEEEe
Q 017520 223 GVALSRDEDYVVVCESWK-CRKYWL 246 (370)
Q Consensus 223 gi~~~~dg~~l~v~~~~~-l~~~~~ 246 (370)
.+.++|....|+-+...+ |..|+-
T Consensus 155 ~V~WHPt~dlL~S~SYDnTIk~~~~ 179 (312)
T KOG0645|consen 155 HVIWHPTEDLLFSCSYDNTIKVYRD 179 (312)
T ss_pred EEEEcCCcceeEEeccCCeEEEEee
Confidence 788999887455445555 655543
No 313
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.32 E-value=83 Score=31.06 Aligned_cols=140 Identities=14% Similarity=0.153 Sum_probs=73.1
Q ss_pred CCCcEEEEe--cCCeEEEEe--CCe-EEEEEecCCCcee-------ceEEcCCCcEEEEeCCCceEEEcC--CCeEEE--
Q 017520 88 KNGVIYTAT--RDGWIKRLQ--DGT-WVNWKFIDSQTLV-------GLTSTKEGHLIICDNANGLHKVSE--DGVENF-- 151 (370)
Q Consensus 88 ~~G~l~v~~--~~g~I~~~~--~g~-~~~~~~~~~~p~~-------gl~~d~~G~L~v~~~~~gi~~~~~--~g~~~~-- 151 (370)
.+-+|..-+ ...+|++++ .|+ ++.|.....-+.. +-..++. .-+|+-...+|+++|+ .|...+
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e-~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSE-QTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhccccc-ccEEeecCCceEEecccccCcceeee
Confidence 344455444 334688888 666 4455432221110 1122233 3355555679999993 342111
Q ss_pred EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-cceEEccCC
Q 017520 152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDE 230 (370)
Q Consensus 152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-~gi~~~~dg 230 (370)
...-.=..-+..+.++...+|.|.++.- .|-|..||--.......+.++..| .+|.++.||
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS~------------------~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadG 483 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESGYIVVGSL------------------KGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADG 483 (644)
T ss_pred eeccccccccccceeeecCCceEEEeec------------------CCcEEeehhhhhhhhhcccccCCceeeEEeeccC
Confidence 1110001113445677788898888843 366777775333334445555544 678999999
Q ss_pred CEEEEEeCCcEEEEEe
Q 017520 231 DYVVVCESWKCRKYWL 246 (370)
Q Consensus 231 ~~l~v~~~~~l~~~~~ 246 (370)
++++.+..+-|...+.
T Consensus 484 Kwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 484 KWILATCKTYLLLIDT 499 (644)
T ss_pred cEEEEecccEEEEEEE
Confidence 9555444333555544
No 314
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=76.31 E-value=16 Score=33.79 Aligned_cols=162 Identities=14% Similarity=0.113 Sum_probs=76.0
Q ss_pred cceEEcCCCcEEEEecCCeEEEEe-CCe--EEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC--eEEEEee
Q 017520 82 EDASMDKNGVIYTATRDGWIKRLQ-DGT--WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSY 154 (370)
Q Consensus 82 ~~i~~d~~G~l~v~~~~g~I~~~~-~g~--~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g--~~~~~~~ 154 (370)
.++-.| |+.+..|..+..|..|| +.. ........|..+ ++.+| .++.|.... .-+...| .+| ++++...
T Consensus 201 YClQYD-D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVL-CLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihH 276 (499)
T KOG0281|consen 201 YCLQYD-DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVL-CLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHH 276 (499)
T ss_pred EEEEec-chhhhcccccCceEEeccccHHHHHhhhcCCCcEE-eeecc--ceEEEecCCCceEEEEeccCCchhhHHhhh
Confidence 334443 34455555666666666 221 122233445555 66664 567776544 3455555 666 5544332
Q ss_pred cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE----EEEecCCCCccceEEccCC
Q 017520 155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT----TLVADGFYFANGVALSRDE 230 (370)
Q Consensus 155 ~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~----~~~~~~~~~p~gi~~~~dg 230 (370)
.+ .+-.+.+. + .+.++.+ .+..+.++|..+..- +++.......|.+.++ .
T Consensus 277 ce-----aVLhlrf~-n-g~mvtcS-----------------kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~ 330 (499)
T KOG0281|consen 277 CE-----AVLHLRFS-N-GYMVTCS-----------------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--D 330 (499)
T ss_pred cc-----eeEEEEEe-C-CEEEEec-----------------CCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--c
Confidence 11 23344442 2 3344543 223455555442221 1111222334555554 4
Q ss_pred CEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECC-CCCEEEEE
Q 017520 231 DYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAI 280 (370)
Q Consensus 231 ~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~ 280 (370)
+ ++|+.++. |..++.++. .|...+.|.-+||+.-. .|++-|+-
T Consensus 331 k-yIVsASgDRTikvW~~st~------efvRtl~gHkRGIAClQYr~rlvVSG 376 (499)
T KOG0281|consen 331 K-YIVSASGDRTIKVWSTSTC------EFVRTLNGHKRGIACLQYRDRLVVSG 376 (499)
T ss_pred c-eEEEecCCceEEEEeccce------eeehhhhcccccceehhccCeEEEec
Confidence 5 45555444 777765432 23445566677776533 44555543
No 315
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=76.27 E-value=4.4 Score=39.38 Aligned_cols=69 Identities=23% Similarity=0.166 Sum_probs=43.3
Q ss_pred cccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEccCCCEEEEEeCCc
Q 017520 162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWK 240 (370)
Q Consensus 162 ~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~dg~~l~v~~~~~ 240 (370)
.+|.+++.+||....+.+ .+|.|..+|-++.++.-+... +..--.++|+|||+++.....+.
T Consensus 292 ~in~f~FS~DG~~LA~VS-----------------qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD 354 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVS-----------------QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD 354 (636)
T ss_pred cccceeEcCCCceEEEEe-----------------cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc
Confidence 678899999998666654 346666666665544322211 12223578999999777766666
Q ss_pred -EEEEEeC
Q 017520 241 -CRKYWLK 247 (370)
Q Consensus 241 -l~~~~~~ 247 (370)
|.+|.+.
T Consensus 355 LVtVwSf~ 362 (636)
T KOG2394|consen 355 LVTVWSFE 362 (636)
T ss_pred eEEEEEec
Confidence 5555543
No 316
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=76.03 E-value=70 Score=30.04 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=59.1
Q ss_pred CCcCCCcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCce-EEEc-CCC-eEE
Q 017520 76 GSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGL-HKVS-EDG-VEN 150 (370)
Q Consensus 76 ~~~~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi-~~~~-~~g-~~~ 150 (370)
|...-..+|..++.+.+|.+++|+.|.+|| .|....-.. .+.++.++...+.-+|.++.....+ ..+| +++ -..
T Consensus 258 GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 258 GHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred ccccceeeEEEcCCCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 444445677888888999999999999999 444322222 2223327777787788887655454 4455 343 111
Q ss_pred EEeecCCcccccccceEEcCCCc-EEEE
Q 017520 151 FLSYVNGSKLRFANDVVEASDGS-LYFT 177 (370)
Q Consensus 151 ~~~~~~g~~~~~~~~l~~d~~G~-l~v~ 177 (370)
....+-|.. +.+..+-..|... .+++
T Consensus 337 v~~s~~gH~-nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 337 VSQSLIGHK-NWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred eEEeeecch-hhhhheecCCCCceEEEE
Confidence 112222322 3667777777664 4444
No 317
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=75.75 E-value=53 Score=28.52 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=35.0
Q ss_pred CCCcceEEcCCCcEEEEecCCeEEEEe------C---Ce-EE-----E----EEecCCCceeceEEcCCCcEEEEeCC
Q 017520 79 NHPEDASMDKNGVIYTATRDGWIKRLQ------D---GT-WV-----N----WKFIDSQTLVGLTSTKEGHLIICDNA 137 (370)
Q Consensus 79 ~~P~~i~~d~~G~l~v~~~~g~I~~~~------~---g~-~~-----~----~~~~~~~p~~gl~~d~~G~L~v~~~~ 137 (370)
+.-+++++-+.|.||....+.+-+|+- + +. .. + -....+..+ +.+.++.|.|......
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiy-c~~ws~~geliatgsn 109 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIY-CTAWSPCGELIATGSN 109 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEE-EEEecCccCeEEecCC
Confidence 456788999999999655555555553 1 10 00 0 011234566 7788888888776544
No 318
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=74.70 E-value=3.8 Score=24.70 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=16.7
Q ss_pred ceEEcCCCcEEEEecCCeEEEEe
Q 017520 83 DASMDKNGVIYTATRDGWIKRLQ 105 (370)
Q Consensus 83 ~i~~d~~G~l~v~~~~g~I~~~~ 105 (370)
+++++ +|.||+++.+|.|+.++
T Consensus 16 ~~~v~-~g~vyv~~~dg~l~ald 37 (40)
T PF13570_consen 16 SPAVA-GGRVYVGTGDGNLYALD 37 (40)
T ss_dssp --EEC-TSEEEEE-TTSEEEEEE
T ss_pred CCEEE-CCEEEEEcCCCEEEEEe
Confidence 34665 68999999999999987
No 319
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=74.48 E-value=72 Score=31.50 Aligned_cols=104 Identities=12% Similarity=0.130 Sum_probs=56.5
Q ss_pred CCceEEEEeCCCCeEEEEecCCCCccceE--Ecc-CCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECC
Q 017520 197 PHGQLLKYDPSSNITTLVADGFYFANGVA--LSR-DEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAP 272 (370)
Q Consensus 197 ~~g~l~~~d~~t~~~~~~~~~~~~p~gi~--~~~-dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~ 272 (370)
+.|.++.|+...++++........++++. .+. +-..+|-+.... +..++.+... ..+.+- ..+..+..+++.+
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~--~~~~~~-~~~~~~~sl~is~ 154 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV--IIRIWK-EQKPLVSSLCISP 154 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce--eeeeec-cCCCccceEEEcC
Confidence 45677777777777766554333333332 222 222344333333 4444433221 122221 2223477899999
Q ss_pred CCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCC
Q 017520 273 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQ 339 (370)
Q Consensus 273 ~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~ 339 (370)
||.+.+.... .|..+| .+++++..|....+.
T Consensus 155 D~~~l~~as~------------------------------------~ik~~~~~~kevv~~ftgh~s~ 186 (541)
T KOG4547|consen 155 DGKILLTASR------------------------------------QIKVLDIETKEVVITFTGHGSP 186 (541)
T ss_pred CCCEEEeccc------------------------------------eEEEEEccCceEEEEecCCCcc
Confidence 9987766443 267778 568888888776654
No 320
>PHA02790 Kelch-like protein; Provisional
Probab=74.43 E-value=92 Score=30.66 Aligned_cols=138 Identities=12% Similarity=0.128 Sum_probs=69.8
Q ss_pred CCcEEEEe-cC-----CeEEEEe--CCeEEEEEecC-CCceeceEEcCCCcEEEEeCC---CceEEEcC-CC-eEEEEee
Q 017520 89 NGVIYTAT-RD-----GWIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNA---NGLHKVSE-DG-VENFLSY 154 (370)
Q Consensus 89 ~G~l~v~~-~~-----g~I~~~~--~g~~~~~~~~~-~~p~~gl~~d~~G~L~v~~~~---~gi~~~~~-~g-~~~~~~~ 154 (370)
++.||+.. .+ ..+.+++ .+++....... .+...+.+. -+|.||+.... ..+.++++ ++ +..+.+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-ECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 46777643 11 2477777 55555443221 111103333 37899997543 23666763 34 4433221
Q ss_pred cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc--cceEEccCCCE
Q 017520 155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA--NGVALSRDEDY 232 (370)
Q Consensus 155 ~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p--~gi~~~~dg~~ 232 (370)
+- .....-++.-+|+||+.-... .....+.+|||++++++.... ...| ...+..-++ .
T Consensus 350 -~~---~r~~~~~~~~~g~IYviGG~~--------------~~~~~ve~ydp~~~~W~~~~~-m~~~r~~~~~~~~~~-~ 409 (480)
T PHA02790 350 -LK---PRCNPAVASINNVIYVIGGHS--------------ETDTTTEYLLPNHDQWQFGPS-TYYPHYKSCALVFGR-R 409 (480)
T ss_pred -CC---CCcccEEEEECCEEEEecCcC--------------CCCccEEEEeCCCCEEEeCCC-CCCccccceEEEECC-E
Confidence 11 111122333578999984420 012457889999888876432 2222 112223344 4
Q ss_pred EEEEeCCcEEEEEeCC
Q 017520 233 VVVCESWKCRKYWLKG 248 (370)
Q Consensus 233 l~v~~~~~l~~~~~~~ 248 (370)
||+... .+.+||++.
T Consensus 410 IYv~GG-~~e~ydp~~ 424 (480)
T PHA02790 410 LFLVGR-NAEFYCESS 424 (480)
T ss_pred EEEECC-ceEEecCCC
Confidence 888762 277788654
No 321
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=74.22 E-value=34 Score=30.06 Aligned_cols=74 Identities=19% Similarity=0.178 Sum_probs=41.3
Q ss_pred ceEEcC-CCcEEEEeCCCceEEEc-CCC-eEEEE-eecCCcccccccceEEcCC-CcEEEEeCCCCCCCccceecccccC
Q 017520 122 GLTSTK-EGHLIICDNANGLHKVS-EDG-VENFL-SYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGK 196 (370)
Q Consensus 122 gl~~d~-~G~L~v~~~~~gi~~~~-~~g-~~~~~-~~~~g~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~ 196 (370)
||.+-| +|.||-....++||.++ .+| .+.+. ......-......+.|.|- .+|-|-..
T Consensus 31 GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~----------------- 93 (236)
T PF14339_consen 31 GIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSN----------------- 93 (236)
T ss_pred EEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEcc-----------------
Confidence 666654 67888876667888888 567 44441 1111111112334555552 45555532
Q ss_pred CCceEEEEeCCCCeEEE
Q 017520 197 PHGQLLKYDPSSNITTL 213 (370)
Q Consensus 197 ~~g~l~~~d~~t~~~~~ 213 (370)
.|.-+|++++++.+..
T Consensus 94 -~GqNlR~npdtGav~~ 109 (236)
T PF14339_consen 94 -TGQNLRLNPDTGAVTI 109 (236)
T ss_pred -CCcEEEECCCCCCcee
Confidence 3567788888877543
No 322
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=73.31 E-value=74 Score=29.04 Aligned_cols=104 Identities=18% Similarity=0.236 Sum_probs=59.6
Q ss_pred ceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCC
Q 017520 122 GLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPH 198 (370)
Q Consensus 122 gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~ 198 (370)
.+.+. ....|++++..|+..+| .+- ...+....+-. +....+.+ .| ..|++|. +
T Consensus 91 Dv~vs-e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~--gyaygv~v--sGn~aYVadl------------------d 147 (370)
T COG5276 91 DVRVS-EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD--GYAYGVYV--SGNYAYVADL------------------D 147 (370)
T ss_pred eeEec-ccEEEEEcCCCceEEEeccCCCCcceeccccCC--ceEEEEEe--cCCEEEEeec------------------c
Confidence 44453 45799999999999998 322 11111111100 22334444 34 5888874 2
Q ss_pred ceEEEEeCCCCeEEEEecCCCCccc----eEEccCCCEEEEEeCCc-EEEEEeCCCC
Q 017520 199 GQLLKYDPSSNITTLVADGFYFANG----VALSRDEDYVVVCESWK-CRKYWLKGER 250 (370)
Q Consensus 199 g~l~~~d~~t~~~~~~~~~~~~p~g----i~~~~dg~~l~v~~~~~-l~~~~~~~~~ 250 (370)
.+++.+|..+.+.-.+......+.+ +++ .|+.-|++..++ +...|++.+.
T Consensus 148 dgfLivdvsdpssP~lagrya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~ 202 (370)
T COG5276 148 DGFLIVDVSDPSSPQLAGRYALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPH 202 (370)
T ss_pred CcEEEEECCCCCCceeeeeeccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCC
Confidence 4567777654433334444444444 444 467789998777 9889987653
No 323
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=73.26 E-value=54 Score=31.01 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=36.7
Q ss_pred CCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEE
Q 017520 219 YFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI 278 (370)
Q Consensus 219 ~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv 278 (370)
..+.-+++++|++++..+...+ ++.||+..+ ......+....++.+++.|+-..+..
T Consensus 124 ~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G---~l~~~~~dh~~yvqgvawDpl~qyv~ 181 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG---QLLAILDDHEHYVQGVAWDPLNQYVA 181 (434)
T ss_pred cchhhhhccCCCceeeeeeccceEEEEEeccc---eeEeeccccccccceeecchhhhhhh
Confidence 4567899999999777776666 888887543 33333334445667777666544333
No 324
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=73.25 E-value=72 Score=28.85 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=28.9
Q ss_pred ceEEEEeCCCCeEEEEe---cCCCCccceEEccCCCEEEEEeCCcEEEEE
Q 017520 199 GQLLKYDPSSNITTLVA---DGFYFANGVALSRDEDYVVVCESWKCRKYW 245 (370)
Q Consensus 199 g~l~~~d~~t~~~~~~~---~~~~~p~gi~~~~dg~~l~v~~~~~l~~~~ 245 (370)
|.|++-+...+.++.+. .++..+|.++.+.|+..+.|+..+..++-+
T Consensus 148 Gail~T~DgGk~Wk~l~e~~v~~~~~n~ia~s~dng~vaVg~rGs~f~T~ 197 (339)
T COG4447 148 GAILKTTDGGKNWKALVEKAVGLAVPNEIARSADNGYVAVGARGSFFSTW 197 (339)
T ss_pred ceEEEecCCcccHhHhcccccchhhhhhhhhhccCCeEEEecCcceEecC
Confidence 44555443333333322 235578999999999988888876555443
No 325
>PHA03098 kelch-like protein; Provisional
Probab=73.19 E-value=1e+02 Score=30.65 Aligned_cols=142 Identities=12% Similarity=0.099 Sum_probs=69.5
Q ss_pred CCcEEEEe-c------CCeEEEEe--CCeEEEEEecC-CC-ceeceEEcCCCcEEEEeCCC------ceEEEc-CCC-eE
Q 017520 89 NGVIYTAT-R------DGWIKRLQ--DGTWVNWKFID-SQ-TLVGLTSTKEGHLIICDNAN------GLHKVS-EDG-VE 149 (370)
Q Consensus 89 ~G~l~v~~-~------~g~I~~~~--~g~~~~~~~~~-~~-p~~gl~~d~~G~L~v~~~~~------gi~~~~-~~g-~~ 149 (370)
++.||+.. . ...+++++ ++++....... .+ -. +++. -+|.||+..... .+.+++ .++ ++
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTV-FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEE-ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 56777643 1 12477787 56665443211 11 12 3333 368899865422 256677 344 54
Q ss_pred EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc--cceEEc
Q 017520 150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA--NGVALS 227 (370)
Q Consensus 150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p--~gi~~~ 227 (370)
...+. +... .-..+ ..-+|+||+.-..... ......+.+||+.+++++.... ...+ ...+..
T Consensus 372 ~~~~l-p~~r--~~~~~-~~~~~~iYv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~~~-~p~~r~~~~~~~ 435 (534)
T PHA03098 372 EEPPL-IFPR--YNPCV-VNVNNLIYVIGGISKN-----------DELLKTVECFSLNTNKWSKGSP-LPISHYGGCAIY 435 (534)
T ss_pred eCCCc-CcCC--ccceE-EEECCEEEEECCcCCC-----------CcccceEEEEeCCCCeeeecCC-CCccccCceEEE
Confidence 43221 1111 11122 2346899997442110 0123568999999888776532 2211 111222
Q ss_pred cCCCEEEEEeC---------Cc-EEEEEeCCC
Q 017520 228 RDEDYVVVCES---------WK-CRKYWLKGE 249 (370)
Q Consensus 228 ~dg~~l~v~~~---------~~-l~~~~~~~~ 249 (370)
-++ .+|+..- .. +++||+...
T Consensus 436 ~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 436 HDG-KIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred ECC-EEEEECCccCCCCCcccceEEEecCCCC
Confidence 344 4776542 12 788887543
No 326
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=72.76 E-value=1.1e+02 Score=30.89 Aligned_cols=132 Identities=16% Similarity=0.170 Sum_probs=68.6
Q ss_pred eEEEEe--CCeEEEEEec-CCC-ceeceEEcCCCcEEEEeCCC-c------eEEEcC-CC-eEEEEeecCCcccccccce
Q 017520 100 WIKRLQ--DGTWVNWKFI-DSQ-TLVGLTSTKEGHLIICDNAN-G------LHKVSE-DG-VENFLSYVNGSKLRFANDV 166 (370)
Q Consensus 100 ~I~~~~--~g~~~~~~~~-~~~-p~~gl~~d~~G~L~v~~~~~-g------i~~~~~-~g-~~~~~~~~~g~~~~~~~~l 166 (370)
.+..++ .+.+...... ..+ .. ++++- +|.||+..... | +.++|+ .+ +..+.+-... ..-.++
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~-~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~---R~~~~v 376 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRV-GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK---RSDFGV 376 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccc-cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc---ccccee
Confidence 344555 4444444322 122 23 66664 67999975444 2 566673 33 4443222111 111223
Q ss_pred EEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCC-------
Q 017520 167 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW------- 239 (370)
Q Consensus 167 ~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~------- 239 (370)
++ -+|.||+.-... .......+-+||+.+.+++.+..-...-.+.+...-+..+|+..-.
T Consensus 377 ~~-l~g~iYavGG~d------------g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l 443 (571)
T KOG4441|consen 377 AV-LDGKLYAVGGFD------------GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCL 443 (571)
T ss_pred EE-ECCEEEEEeccc------------cccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcccc
Confidence 32 468899885421 0112346889999999988776433322333333323348877541
Q ss_pred c-EEEEEeCCC
Q 017520 240 K-CRKYWLKGE 249 (370)
Q Consensus 240 ~-l~~~~~~~~ 249 (370)
. +.+||+...
T Consensus 444 ~sve~YDP~t~ 454 (571)
T KOG4441|consen 444 NSVECYDPETN 454 (571)
T ss_pred ceEEEEcCCCC
Confidence 1 788987654
No 327
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=72.63 E-value=32 Score=35.17 Aligned_cols=140 Identities=13% Similarity=0.121 Sum_probs=74.4
Q ss_pred cEEEEecCCeEEEEe-CC--e---EEEEEecCCCceeceEEcCCC-cEEEEeCCCceEE-Ec-C-CC-eEEEEeecCCcc
Q 017520 91 VIYTATRDGWIKRLQ-DG--T---WVNWKFIDSQTLVGLTSTKEG-HLIICDNANGLHK-VS-E-DG-VENFLSYVNGSK 159 (370)
Q Consensus 91 ~l~v~~~~g~I~~~~-~g--~---~~~~~~~~~~p~~gl~~d~~G-~L~v~~~~~gi~~-~~-~-~g-~~~~~~~~~g~~ 159 (370)
.|.+.+.+|.|..|| +. + ...|.+..-..+ .+.|.+-. ++.|.....|.++ +| + +. ...+.. .
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~-~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-----n 175 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSAN-KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-----N 175 (839)
T ss_pred hheeecCCCcEEEEecCccccchhhhHhhhhcccee-eeeeccCCccEEEecCCCceEEEEeeecccccccccc-----c
Confidence 344555788888888 32 1 122333333345 67776543 6777666666555 44 3 22 222222 1
Q ss_pred cccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE-EEEecCCCCc-cceEEccCCCEEEEE
Q 017520 160 LRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGFYFA-NGVALSRDEDYVVVC 236 (370)
Q Consensus 160 ~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~-~~~~~~~~~p-~gi~~~~dg~~l~v~ 236 (370)
..++.++.+.|. ++.|++.. .+|.|..+|...... .........| -.+-++|++.+|--+
T Consensus 176 SESiRDV~fsp~~~~~F~s~~-----------------dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATG 238 (839)
T KOG0269|consen 176 SESIRDVKFSPGYGNKFASIH-----------------DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATG 238 (839)
T ss_pred chhhhceeeccCCCceEEEec-----------------CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeec
Confidence 247889999874 56666643 457888899753211 1111111222 235578866544444
Q ss_pred eCCc-EEEEEeCCCCCCc
Q 017520 237 ESWK-CRKYWLKGERKGK 253 (370)
Q Consensus 237 ~~~~-l~~~~~~~~~~~~ 253 (370)
.+.+ |..+++.+++...
T Consensus 239 GRDK~vkiWd~t~~~~~~ 256 (839)
T KOG0269|consen 239 GRDKMVKIWDMTDSRAKP 256 (839)
T ss_pred CCCccEEEEeccCCCccc
Confidence 4444 7777777654443
No 328
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=71.97 E-value=91 Score=29.49 Aligned_cols=17 Identities=35% Similarity=0.519 Sum_probs=13.9
Q ss_pred ceEEEEeCCCCeEEEEe
Q 017520 199 GQLLKYDPSSNITTLVA 215 (370)
Q Consensus 199 g~l~~~d~~t~~~~~~~ 215 (370)
..|++||+.++++..+.
T Consensus 189 ~~v~~YD~~t~~W~~~~ 205 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAG 205 (376)
T ss_pred ceEEEEECCCCeeeECC
Confidence 57999999988887654
No 329
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=71.69 E-value=17 Score=21.08 Aligned_cols=29 Identities=21% Similarity=0.090 Sum_probs=21.6
Q ss_pred CCCCccceEEccCCCEEEEEeCCc-EEEEE
Q 017520 217 GFYFANGVALSRDEDYVVVCESWK-CRKYW 245 (370)
Q Consensus 217 ~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~ 245 (370)
.....+.++++++++.+..+..++ |..||
T Consensus 10 h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 10 HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 345667899999999787777777 66654
No 330
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=71.21 E-value=1.3e+02 Score=30.78 Aligned_cols=62 Identities=15% Similarity=0.141 Sum_probs=42.1
Q ss_pred CCCcceEEcCCCcEEEEecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceE
Q 017520 79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLH 141 (370)
Q Consensus 79 ~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~ 141 (370)
..-..+++.+||.=.+-..+.+++.+| +|. ..+........+ .++.+.||..+.+......+
T Consensus 13 hci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVy-cVAys~dGkrFASG~aDK~V 77 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVY-CVAYAKDGKRFASGSADKSV 77 (1081)
T ss_pred cchheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEE-EEEEccCCceeccCCCceeE
Confidence 356778999999655444567899999 565 444444455567 88998899888765433333
No 331
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=71.17 E-value=40 Score=32.52 Aligned_cols=138 Identities=14% Similarity=0.120 Sum_probs=71.6
Q ss_pred cceEEccCCCEEEEEeCCcEEEEEeCCCCCCceeeeccCCCC---------------CCCceeECCCCC--EEEEEecCc
Q 017520 222 NGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPG---------------APDNINLAPDGT--FWIAIIKLD 284 (370)
Q Consensus 222 ~gi~~~~dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~~~~~g---------------~p~~i~~d~~G~--lwv~~~~~~ 284 (370)
..+.++|||+.+|+-+...+.+|+++....... ...+..|| .-.=+..++||- =|.-...+
T Consensus 224 ~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~r-kl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~- 301 (733)
T COG4590 224 SQLLLTPDGKTLYVRTGSELVVALLDKRSLQIR-KLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRD- 301 (733)
T ss_pred HhhEECCCCCEEEEecCCeEEEEeecccccchh-hhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecC-
Confidence 567899999999998875577777765433322 22222222 112244566663 34433222
Q ss_pred hhHHHhhhcchhHHHHH-Hh-CCccccccccCCCceEEEEECCCCcEEEEEeCCCCC-----ccccceeEEEECCEEEEE
Q 017520 285 ARRMKILNSSKLIKHVL-AA-YPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ-----LMSFVTSGLQVDNHLYVI 357 (370)
Q Consensus 285 ~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~-----~~~~~t~~~~~~g~L~~g 357 (370)
..|.+.++. .+ .|..++.+.+..+.-+.+.++++|+.-..+...+.. ......-+......-|+.
T Consensus 302 --------~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll 373 (733)
T COG4590 302 --------GQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLL 373 (733)
T ss_pred --------CCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchhe
Confidence 123333331 12 234444444455555678889999876665543321 112222333333445555
Q ss_pred eCCCCeEEEEeC
Q 017520 358 SLTSNFIGKVQL 369 (370)
Q Consensus 358 s~~~~~i~~~~~ 369 (370)
+.++..|.++++
T Consensus 374 ~e~~gki~~~~l 385 (733)
T COG4590 374 SEDQGKIRLAQL 385 (733)
T ss_pred eecCCceEEEEe
Confidence 566666665554
No 332
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=70.64 E-value=87 Score=28.73 Aligned_cols=145 Identities=15% Similarity=0.147 Sum_probs=78.2
Q ss_pred CcceEEcCCCcEEEEecCCeEEEEe-CC--eEEEEEecCCCceeceEEc-C-CCc-EEEEeCC-Cc-eEEEc-C-CCe--
Q 017520 81 PEDASMDKNGVIYTATRDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTST-K-EGH-LIICDNA-NG-LHKVS-E-DGV-- 148 (370)
Q Consensus 81 P~~i~~d~~G~l~v~~~~g~I~~~~-~g--~~~~~~~~~~~p~~gl~~d-~-~G~-L~v~~~~-~g-i~~~~-~-~g~-- 148 (370)
-.+|.++++ +|.+... ++|+.|. .. +.....+....|. |++.- + .+. +.+.-.. .| |...+ . +..
T Consensus 97 I~~V~l~r~-riVvvl~-~~I~VytF~~n~k~l~~~et~~NPk-GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~ 173 (346)
T KOG2111|consen 97 IKAVKLRRD-RIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPK-GLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNA 173 (346)
T ss_pred eeeEEEcCC-eEEEEec-CeEEEEEcCCChhheeeeecccCCC-ceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCC
Confidence 355666554 5666654 5688888 32 3222233445566 76543 2 122 3332211 12 22222 1 111
Q ss_pred EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEE-EeCCCCeEE-EEecCCC--Cccce
Q 017520 149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLK-YDPSSNITT-LVADGFY--FANGV 224 (370)
Q Consensus 149 ~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~-~d~~t~~~~-~~~~~~~--~p~gi 224 (370)
..++.. ....+..++...+|++..|.+ ..|+|.| +|..+|+.. .+-.+.. ....+
T Consensus 174 p~~I~A----H~s~Iacv~Ln~~Gt~vATaS-----------------tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 174 PSIINA----HDSDIACVALNLQGTLVATAS-----------------TKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred ceEEEc----ccCceeEEEEcCCccEEEEec-----------------cCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 111111 112445678888999887765 4578777 466666443 2333322 34578
Q ss_pred EEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520 225 ALSRDEDYVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 225 ~~~~dg~~l~v~~~~~-l~~~~~~~~ 249 (370)
+++++..+|.++...+ |..|.+.+.
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999888888777 888877654
No 333
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.52 E-value=1.2e+02 Score=30.49 Aligned_cols=92 Identities=11% Similarity=0.107 Sum_probs=57.1
Q ss_pred EEcCCCcEEEEecCCeEEEEe--CC-eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCCeEEEEeecCCcc
Q 017520 85 SMDKNGVIYTATRDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDGVENFLSYVNGSK 159 (370)
Q Consensus 85 ~~d~~G~l~v~~~~g~I~~~~--~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g~~~~~~~~~g~~ 159 (370)
.+.+..=+.+|+.|.+|..++ ++ +++.|........ +|++.|.-=..++..+.-..++. ++++.. ...++|..
T Consensus 63 fiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR-~iavHPt~P~vLtsSDDm~iKlW~we~~wa~-~qtfeGH~ 140 (794)
T KOG0276|consen 63 FIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIR-SIAVHPTLPYVLTSSDDMTIKLWDWENEWAC-EQTFEGHE 140 (794)
T ss_pred eeeccceEEEecCCceEEEEecccceeeEEeecccccee-eeeecCCCCeEEecCCccEEEEeeccCceee-eeEEcCcc
Confidence 334455566777889999988 44 5677776777777 89998866555555454444444 444211 11234432
Q ss_pred cccccceEEcCCC-cEEEEeC
Q 017520 160 LRFANDVVEASDG-SLYFTVS 179 (370)
Q Consensus 160 ~~~~~~l~~d~~G-~l~v~d~ 179 (370)
+++.++++.|.. +-+.+.+
T Consensus 141 -HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 141 -HYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred -eEEEEEEecCCCccceeeee
Confidence 578899999855 5666643
No 334
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=69.49 E-value=87 Score=30.89 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=36.1
Q ss_pred CCccceEEccCCCEEEEEeCCc-EEEEEeCCCC-CCceeeeccCCCCCCCceeECCCCCEEEE
Q 017520 219 YFANGVALSRDEDYVVVCESWK-CRKYWLKGER-KGKLETFAENLPGAPDNINLAPDGTFWIA 279 (370)
Q Consensus 219 ~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~-~~~~~~~~~~~~g~p~~i~~d~~G~lwv~ 279 (370)
..+|..++++||++|-.....+ |.+|+.+..+ .+..+.+... ---++.++||.+-++
T Consensus 291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG----LLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG----LLCVCWSPDGKYIVT 349 (636)
T ss_pred ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccc----eEEEEEcCCccEEEe
Confidence 3789999999999888888777 8888765432 1222222211 112556888865554
No 335
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.81 E-value=70 Score=28.58 Aligned_cols=61 Identities=16% Similarity=0.312 Sum_probs=35.7
Q ss_pred ceEEcCCCcEEEEe----cCCeEEEEeCCeEEEEEecCCCce--------eceEEcCCCcEEEEeCC-CceEEEc
Q 017520 83 DASMDKNGVIYTAT----RDGWIKRLQDGTWVNWKFIDSQTL--------VGLTSTKEGHLIICDNA-NGLHKVS 144 (370)
Q Consensus 83 ~i~~d~~G~l~v~~----~~g~I~~~~~g~~~~~~~~~~~p~--------~gl~~d~~G~L~v~~~~-~gi~~~~ 144 (370)
-|++..+|+.+.|. .+|++.-+.+++++......++|. .|+++- ||..+|+-.. ++|..|.
T Consensus 88 fiav~DtG~wfeg~i~rDa~grl~Gl~dgr~~pm~d~~Gqpi~~K~e~DaEGLAvr-dG~~~VsfEr~hRI~iyp 161 (340)
T COG4246 88 FIAVTDTGHWFEGKIQRDANGRLAGLTDGRLTPMRDLDGQPIQEKWEVDAEGLAVR-DGDALVSFERDHRIWIYP 161 (340)
T ss_pred eEEEeecCceEEEEEEeccCCCcccccccceeecccCCCCCCcchhccccccceEe-cCceEEEeeccceeEEec
Confidence 35555566655553 445555555667666665555442 167775 8888887443 5665554
No 336
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=68.59 E-value=1.3e+02 Score=29.82 Aligned_cols=102 Identities=12% Similarity=0.151 Sum_probs=57.5
Q ss_pred ccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc
Q 017520 161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 240 (370)
Q Consensus 161 ~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~ 240 (370)
+-++++.+.++|+=+... ||+.. ..+-.||.+..-+..+..+ -=|.+-++|.|+.+.++.-++
T Consensus 271 GPVhdv~W~~s~~EF~Vv----yGfMP-----------Akvtifnlr~~~v~df~eg--pRN~~~fnp~g~ii~lAGFGN 333 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVV----YGFMP-----------AKVTIFNLRGKPVFDFPEG--PRNTAFFNPHGNIILLAGFGN 333 (566)
T ss_pred CCceEEEECCCCCEEEEE----Eeccc-----------ceEEEEcCCCCEeEeCCCC--CccceEECCCCCEEEEeecCC
Confidence 356788888888644332 33322 3566677764433222222 126788999999999998877
Q ss_pred ----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEE-EEecCc
Q 017520 241 ----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI-AIIKLD 284 (370)
Q Consensus 241 ----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv-~~~~~~ 284 (370)
+-.||+...+ .+.......-.-....+||.+++ ++...|
T Consensus 334 L~G~mEvwDv~n~K-----~i~~~~a~~tt~~eW~PdGe~flTATTaPR 377 (566)
T KOG2315|consen 334 LPGDMEVWDVPNRK-----LIAKFKAANTTVFEWSPDGEYFLTATTAPR 377 (566)
T ss_pred CCCceEEEeccchh-----hccccccCCceEEEEcCCCcEEEEEecccc
Confidence 8888875422 11111110112244578886444 444444
No 337
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=68.56 E-value=1.3e+02 Score=29.82 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=47.7
Q ss_pred ceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc---EEEEEeCCCCCCceeeeccCCCCCCCc-eeECCCC
Q 017520 199 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK---CRKYWLKGERKGKLETFAENLPGAPDN-INLAPDG 274 (370)
Q Consensus 199 g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~---l~~~~~~~~~~~~~~~~~~~~~g~p~~-i~~d~~G 274 (370)
..||.++.++..+.+-...-.-...+.|+++++..-|.--.. +..|++++. .+. ..+..|+| +.+.+.|
T Consensus 251 q~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------~v~-df~egpRN~~~fnp~g 323 (566)
T KOG2315|consen 251 QTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------PVF-DFPEGPRNTAFFNPHG 323 (566)
T ss_pred ceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC------EeE-eCCCCCccceEECCCC
Confidence 468888887555555444333446789999998666655433 888887653 122 23333666 7789999
Q ss_pred CEEEEE
Q 017520 275 TFWIAI 280 (370)
Q Consensus 275 ~lwv~~ 280 (370)
||.+-.
T Consensus 324 ~ii~lA 329 (566)
T KOG2315|consen 324 NIILLA 329 (566)
T ss_pred CEEEEe
Confidence 965544
No 338
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=68.15 E-value=88 Score=27.84 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=78.3
Q ss_pred cCCCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEe--cCC------------CceeceEEcCCCcEEEE---eCC
Q 017520 78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKF--IDS------------QTLVGLTSTKEGHLIIC---DNA 137 (370)
Q Consensus 78 ~~~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~--~~~------------~p~~gl~~d~~G~L~v~---~~~ 137 (370)
+.|+..+.. +|.+|.-- ....|.|++ ++.+..... ..+ .-. .+++|. ..|||. ...
T Consensus 69 ~~GtG~vVY--ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~i-D~AvDE-~GLWvIYat~~~ 144 (250)
T PF02191_consen 69 WQGTGHVVY--NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDI-DFAVDE-NGLWVIYATEDN 144 (250)
T ss_pred eccCCeEEE--CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceE-EEEEcC-CCEEEEEecCCC
Confidence 456666665 57787654 456799999 444431111 000 113 578874 456664 222
Q ss_pred Cc---eEEEcCCC--eEEEEe-ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE
Q 017520 138 NG---LHKVSEDG--VENFLS-YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT 211 (370)
Q Consensus 138 ~g---i~~~~~~g--~~~~~~-~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~ 211 (370)
.| |-++|+.- ++.... ..... ..-+.+ --=|.||++++.... ...--+.||..+++.
T Consensus 145 ~g~ivvskld~~tL~v~~tw~T~~~k~--~~~naF--mvCGvLY~~~s~~~~-------------~~~I~yafDt~t~~~ 207 (250)
T PF02191_consen 145 NGNIVVSKLDPETLSVEQTWNTSYPKR--SAGNAF--MVCGVLYATDSYDTR-------------DTEIFYAFDTYTGKE 207 (250)
T ss_pred CCcEEEEeeCcccCceEEEEEeccCch--hhccee--eEeeEEEEEEECCCC-------------CcEEEEEEECCCCce
Confidence 34 44555432 332222 11111 111221 123899999864210 122346788876655
Q ss_pred EEEe----cCCCCccceEEccCCCEEEEEeCCcEEEEEe
Q 017520 212 TLVA----DGFYFANGVALSRDEDYVVVCESWKCRKYWL 246 (370)
Q Consensus 212 ~~~~----~~~~~p~gi~~~~dg~~l~v~~~~~l~~~~~ 246 (370)
+.+. ........+..+|..+.||+-+.+.+..|++
T Consensus 208 ~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~G~~v~Y~v 246 (250)
T PF02191_consen 208 EDVSIPFPNPYGNISMLSYNPRDKKLYAWDNGYQVTYDV 246 (250)
T ss_pred eceeeeeccccCceEeeeECCCCCeEEEEECCeEEEEEE
Confidence 4322 1222345678889888899999877666765
No 339
>PRK10115 protease 2; Provisional
Probab=66.76 E-value=1.7e+02 Score=30.47 Aligned_cols=48 Identities=6% Similarity=-0.123 Sum_probs=30.8
Q ss_pred ceEEEEeCCCCeE--EEEecCCCCccceEEccCCCEEEEEeC--C--c---EEEEEeCCC
Q 017520 199 GQLLKYDPSSNIT--TLVADGFYFANGVALSRDEDYVVVCES--W--K---CRKYWLKGE 249 (370)
Q Consensus 199 g~l~~~d~~t~~~--~~~~~~~~~p~gi~~~~dg~~l~v~~~--~--~---l~~~~~~~~ 249 (370)
..|+.+|..++.. +.+ .+.. .++++.+|++.+|++.. . . |+++++.++
T Consensus 153 ~~l~v~d~~tg~~l~~~i-~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 153 YGIRFRNLETGNWYPELL-DNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred EEEEEEECCCCCCCCccc-cCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCC
Confidence 4688888887752 211 2222 45899999988877643 1 2 888887654
No 340
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=66.30 E-value=91 Score=28.92 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=33.9
Q ss_pred EccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCC-----CCCCCceeECCCCCEEEEEecC
Q 017520 226 LSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENL-----PGAPDNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 226 ~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~-----~g~p~~i~~d~~G~lwv~~~~~ 283 (370)
-+-||+++++..+.. ....+++.-+.+....+.-.+ .-++-|+..-.+|++|++...+
T Consensus 139 a~fDGe~VLvvsR~~~~pHLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLSG 203 (442)
T PF15416_consen 139 ASFDGEHVLVVSRGTTKPHLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLSG 203 (442)
T ss_pred cCCCCcEEEEEecCCCCceeeehhHhhcCCccceeeecccccCcccccchhhhcCCeEEEEeccC
Confidence 355788777776633 333333333444443322111 2267788878899999999776
No 341
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=62.92 E-value=1.2e+02 Score=27.69 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=26.6
Q ss_pred CCCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEE
Q 017520 79 NHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWK 113 (370)
Q Consensus 79 ~~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~ 113 (370)
....+|..+++|++.++. .-..|++++ +|++....
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~l 181 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRL 181 (299)
T ss_pred cEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEe
Confidence 345678888999988888 556799999 77766554
No 342
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.54 E-value=70 Score=34.22 Aligned_cols=138 Identities=13% Similarity=0.057 Sum_probs=67.8
Q ss_pred CcEEEEecCCeEEEEe-C-----CeEE---EEEecCCCceeceEEcCCCc-EEEEeCCC-ceEEEcCCC-eEEEEeecCC
Q 017520 90 GVIYTATRDGWIKRLQ-D-----GTWV---NWKFIDSQTLVGLTSTKEGH-LIICDNAN-GLHKVSEDG-VENFLSYVNG 157 (370)
Q Consensus 90 G~l~v~~~~g~I~~~~-~-----g~~~---~~~~~~~~p~~gl~~d~~G~-L~v~~~~~-gi~~~~~~g-~~~~~~~~~g 157 (370)
|-|--|..||.|.-|+ + ++.. ......|... |+-|.+... +.....+. .|+.+|-+. -+.+... .-
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~-gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~ 158 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVL-GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQ 158 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCcee-eeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CC
Confidence 4444455889898888 2 2222 2233456677 899988776 55544333 477776222 1111110 00
Q ss_pred cccccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE-EEEecC-C-CCccceEEccCCCE-
Q 017520 158 SKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADG-F-YFANGVALSRDEDY- 232 (370)
Q Consensus 158 ~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~-~~~~~~-~-~~p~gi~~~~dg~~- 232 (370)
.....+..|+.... .+|+.+. ..+|+...+|...++- ..+... . ..-.+++|+|++-.
T Consensus 159 ~~~~eI~~lsWNrkvqhILAS~-----------------s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 159 APPSEIKCLSWNRKVSHILASG-----------------SPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred CCcccceEeccchhhhHHhhcc-----------------CCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 01123333444332 2343332 2457788888764421 111111 1 12358999998643
Q ss_pred EEEEeCC-c---EEEEEe
Q 017520 233 VVVCESW-K---CRKYWL 246 (370)
Q Consensus 233 l~v~~~~-~---l~~~~~ 246 (370)
++++... + |..+|+
T Consensus 222 l~~As~dd~~PviqlWDl 239 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDL 239 (1049)
T ss_pred eeeecCCCCCceeEeecc
Confidence 5554433 3 555664
No 343
>PHA03098 kelch-like protein; Provisional
Probab=62.50 E-value=1.7e+02 Score=29.10 Aligned_cols=104 Identities=9% Similarity=0.052 Sum_probs=52.2
Q ss_pred CCcEEEEeCC-------CceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCC
Q 017520 128 EGHLIICDNA-------NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 198 (370)
Q Consensus 128 ~G~L~v~~~~-------~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 198 (370)
++.||+.... ..++.++ .+. +..+... +. + ..-..++ .-+|+||+.-... .....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-~~-~-R~~~~~~-~~~~~lyv~GG~~------------~~~~~ 357 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL-IY-P-RKNPGVT-VFNNRIYVIGGIY------------NSISL 357 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC-Cc-c-cccceEE-EECCEEEEEeCCC------------CCEec
Confidence 5688886432 1467777 444 5433221 11 1 1111222 2368899874421 01123
Q ss_pred ceEEEEeCCCCeEEEEecCCCCcc-c-eEEccCCCEEEEEeC----C---c-EEEEEeCCC
Q 017520 199 GQLLKYDPSSNITTLVADGFYFAN-G-VALSRDEDYVVVCES----W---K-CRKYWLKGE 249 (370)
Q Consensus 199 g~l~~~d~~t~~~~~~~~~~~~p~-g-i~~~~dg~~l~v~~~----~---~-l~~~~~~~~ 249 (370)
..+.+||+.+++++... .+..|. + .+..-+++ +|+..- . + +.+||+...
T Consensus 358 ~~v~~yd~~~~~W~~~~-~lp~~r~~~~~~~~~~~-iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 358 NTVESWKPGESKWREEP-PLIFPRYNPCVVNVNNL-IYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred ceEEEEcCCCCceeeCC-CcCcCCccceEEEECCE-EEEECCcCCCCcccceEEEEeCCCC
Confidence 56899999988876543 222221 1 11223444 777542 1 2 889997653
No 344
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=62.33 E-value=73 Score=32.11 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=59.6
Q ss_pred ecCCCceeceEEcCCCcEEEEeCCC-ceEEEc-CCCeEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceec
Q 017520 114 FIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD 191 (370)
Q Consensus 114 ~~~~~p~~gl~~d~~G~L~v~~~~~-gi~~~~-~~g~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~ 191 (370)
...+... +++.+++|+....--.. .|..+. +.+-+.+... .|.....--.+.+.-||++.+...-.+
T Consensus 718 gHtdqIf-~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg-~gpvgtRgARi~wacdgr~viv~Gfdk--------- 786 (1012)
T KOG1445|consen 718 GHTDQIF-GIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEG-KGPVGTRGARILWACDGRIVIVVGFDK--------- 786 (1012)
T ss_pred cCcCcee-EEEECCCCcceeeeecCceEEEeCCCCCCCccccC-CCCccCcceeEEEEecCcEEEEecccc---------
Confidence 3445678 99999999876643333 455555 3331211111 110001112355666777666543110
Q ss_pred ccccCCCceEEEEeCCCCeEEEE----ecCCCCccceEEccCCCEEEEEeCCc--EEEEEeC
Q 017520 192 ILEGKPHGQLLKYDPSSNITTLV----ADGFYFANGVALSRDEDYVVVCESWK--CRKYWLK 247 (370)
Q Consensus 192 ~~~~~~~g~l~~~d~~t~~~~~~----~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~ 247 (370)
.....|..||.++-....+ .+....+---.+|.|.+.++++.-+. |+.|.+-
T Consensus 787 ----~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 787 ----SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred ----cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence 1223455565443221111 11112222234678888888888776 8888764
No 345
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=62.32 E-value=1.8e+02 Score=29.25 Aligned_cols=147 Identities=12% Similarity=0.067 Sum_probs=83.0
Q ss_pred CCCcCCCcceEEcC-CCcEEEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCcEEEE-eCCCceEEEc-CCC-
Q 017520 75 EGSVNHPEDASMDK-NGVIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG- 147 (370)
Q Consensus 75 ~~~~~~P~~i~~d~-~G~l~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~-~~~~gi~~~~-~~g- 147 (370)
.|...+-.++++.. ++.++.|+.|..+..|+ +|.- ..+...... +..++..+.+.++ ..+.-|..++ ++|
T Consensus 246 ~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st---v~~~~~~~~~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 246 VGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS---VRCLTIDPFLLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred cCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCce---EEEEEccCceEeeccCCceEEEEeccCcc
Confidence 35555677788875 45666777788888888 5653 333212221 3344434444444 2334455555 667
Q ss_pred -eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC-CCccceE
Q 017520 148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVA 225 (370)
Q Consensus 148 -~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-~~p~gi~ 225 (370)
+..+.. ....++.+..+ +.+.|+.+ .++.|-.||+.+++.-....+. .....+.
T Consensus 323 ~l~l~~~-----h~~~V~~v~~~--~~~lvsgs-----------------~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~ 378 (537)
T KOG0274|consen 323 CLNLLRG-----HTGPVNCVQLD--EPLLVSGS-----------------YDGTVKVWDPRTGKCLKSLSGHTGRVYSLI 378 (537)
T ss_pred eEEEecc-----ccccEEEEEec--CCEEEEEe-----------------cCceEEEEEhhhceeeeeecCCcceEEEEE
Confidence 443321 12356777776 55444433 2467888888877665444331 1233455
Q ss_pred EccCCCEEEEEeCCc-EEEEEeCCC
Q 017520 226 LSRDEDYVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 226 ~~~dg~~l~v~~~~~-l~~~~~~~~ 249 (370)
++.. +.++-+...+ |..+|+.+.
T Consensus 379 ~~~~-~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 379 VDSE-NRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred ecCc-ceEEeeeeccceEeecCCch
Confidence 5544 5577777667 888887664
No 346
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=61.43 E-value=1.2e+02 Score=27.07 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=23.0
Q ss_pred CccceEEccCCCEEEEEeCCc-EEEEEeCC
Q 017520 220 FANGVALSRDEDYVVVCESWK-CRKYWLKG 248 (370)
Q Consensus 220 ~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~ 248 (370)
...|+..+.....||+++..- ||+|..+.
T Consensus 206 QTEG~VaDdEtG~LYIaeEdvaiWK~~Aep 235 (364)
T COG4247 206 QTEGMVADDETGFLYIAEEDVAIWKYEAEP 235 (364)
T ss_pred cccceeeccccceEEEeeccceeeecccCC
Confidence 456888887766799999887 99997653
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=60.17 E-value=1.7e+02 Score=28.48 Aligned_cols=136 Identities=15% Similarity=0.103 Sum_probs=61.8
Q ss_pred CCCcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCC-eEEEEe
Q 017520 79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG-VENFLS 153 (370)
Q Consensus 79 ~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g-~~~~~~ 153 (370)
..|..+...++|+..+...+|.-..+. ..+-+.+ +... ..++.+.++.-+-+....|..+. ++. .+.+..
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~----G~g~-~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF----GSGL-SFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE----EE-S-EEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc----Ccee-EEEEecCccEEEEECCCeEEEEEcCccccceEEcC
Confidence 369999999999877666667555555 2222222 1122 45555555555555433333322 111 111110
Q ss_pred ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEE
Q 017520 154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 233 (370)
Q Consensus 154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l 233 (370)
. ..+..|.- |.+....+ ++.|..||-++++...-.+ ......+.|+++|+.+
T Consensus 108 ~------~~~~~If~---G~LL~~~~------------------~~~i~~yDw~~~~~i~~i~-v~~vk~V~Ws~~g~~v 159 (443)
T PF04053_consen 108 P------FSVEKIFG---GNLLGVKS------------------SDFICFYDWETGKLIRRID-VSAVKYVIWSDDGELV 159 (443)
T ss_dssp S------S-EEEEE----SSSEEEEE------------------TTEEEEE-TTT--EEEEES-S-E-EEEEE-TTSSEE
T ss_pred C------cccceEEc---CcEEEEEC------------------CCCEEEEEhhHcceeeEEe-cCCCcEEEEECCCCEE
Confidence 0 12233332 66555432 2468899988765533222 1223789999999977
Q ss_pred EEEeCCc--EEEEEeC
Q 017520 234 VVCESWK--CRKYWLK 247 (370)
Q Consensus 234 ~v~~~~~--l~~~~~~ 247 (370)
.+..... |.+|+.+
T Consensus 160 al~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 160 ALVTKDSIYILKYNLE 175 (443)
T ss_dssp EEE-S-SEEEEEE-HH
T ss_pred EEEeCCeEEEEEecch
Confidence 7776555 6677654
No 348
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=59.74 E-value=1.6e+02 Score=28.00 Aligned_cols=73 Identities=12% Similarity=0.019 Sum_probs=37.4
Q ss_pred ccceEEcCCCcE-EEEeCCCCCCCccceecccccCCC-ceEEEEeCCCC-----eEEEEecCCCCccceEEccCCCEEEE
Q 017520 163 ANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKPH-GQLLKYDPSSN-----ITTLVADGFYFANGVALSRDEDYVVV 235 (370)
Q Consensus 163 ~~~l~~d~~G~l-~v~d~~~~~~~~~~~~~~~~~~~~-g~l~~~d~~t~-----~~~~~~~~~~~p~gi~~~~dg~~l~v 235 (370)
.-++..++||+. ++...+ ... ..++.++...+ ..+.+...........-.. ++.+|+
T Consensus 229 ~~~~~~s~d~~~l~i~~~~---------------~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi 292 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSS---------------GTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYI 292 (414)
T ss_dssp EEEEEE-TTSSEEEEEEES---------------SSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEE
T ss_pred EEEEEecCcccEEEEEEEc---------------cccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEE
Confidence 346777888864 443322 122 57888888754 4555544333222222223 444555
Q ss_pred -EeCCc----EEEEEeCCCCC
Q 017520 236 -CESWK----CRKYWLKGERK 251 (370)
Q Consensus 236 -~~~~~----l~~~~~~~~~~ 251 (370)
++.+. |.+++++....
T Consensus 293 ~Tn~~a~~~~l~~~~l~~~~~ 313 (414)
T PF02897_consen 293 LTNDDAPNGRLVAVDLADPSP 313 (414)
T ss_dssp EE-TT-TT-EEEEEETTSTSG
T ss_pred eeCCCCCCcEEEEeccccccc
Confidence 44332 88888876543
No 349
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=59.03 E-value=73 Score=35.92 Aligned_cols=29 Identities=31% Similarity=0.156 Sum_probs=20.6
Q ss_pred CCCCccceEEccCCCEEEEEeCCc-EEEEEeC
Q 017520 217 GFYFANGVALSRDEDYVVVCESWK-CRKYWLK 247 (370)
Q Consensus 217 ~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~ 247 (370)
+......|.++.| .|||+++.+ ||.-++.
T Consensus 487 G~a~A~~VgLs~d--rLFvADseGkLYsa~l~ 516 (1774)
T PF11725_consen 487 GKAQAQSVGLSND--RLFVADSEGKLYSADLP 516 (1774)
T ss_pred CchhhhheeecCC--eEEEEeCCCCEEecccc
Confidence 3445566777766 399999988 8877654
No 350
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=57.92 E-value=51 Score=31.77 Aligned_cols=60 Identities=12% Similarity=0.066 Sum_probs=34.5
Q ss_pred ccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCC-ccceEEccCCCEEEEEeCC
Q 017520 161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF-ANGVALSRDEDYVVVCESW 239 (370)
Q Consensus 161 ~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~-p~gi~~~~dg~~l~v~~~~ 239 (370)
..+++|+++++|+..+|... +..+-.||... ..+.......+ .+.+++|..| ++....+
T Consensus 294 g~V~siAv~~~G~YMaTtG~-----------------Dr~~kIWDlR~-~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G 353 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATTGL-----------------DRKVKIWDLRN-FYQLHTYRTPHPASNLSLSQKG--LLALSYG 353 (545)
T ss_pred CCcceEEECCCCcEEeeccc-----------------ccceeEeeecc-ccccceeecCCCcccccccccc--ceeeecC
Confidence 35789999999998888652 34566677642 11111111122 2446666554 5666666
Q ss_pred c
Q 017520 240 K 240 (370)
Q Consensus 240 ~ 240 (370)
.
T Consensus 354 ~ 354 (545)
T KOG1272|consen 354 D 354 (545)
T ss_pred C
Confidence 5
No 351
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=57.81 E-value=56 Score=32.39 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=48.3
Q ss_pred cccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc
Q 017520 162 FANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 240 (370)
Q Consensus 162 ~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~ 240 (370)
.+...+.+++. .+.++. .+|.|..||...+.. ........|+-++++|+|..+.|++..+
T Consensus 261 ~v~~ca~sp~E~kLvlGC------------------~DgSiiLyD~~~~~t-~~~ka~~~P~~iaWHp~gai~~V~s~qG 321 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGC------------------EDGSIILYDTTRGVT-LLAKAEFIPTLIAWHPDGAIFVVGSEQG 321 (545)
T ss_pred cceEEecCcccceEEEEe------------------cCCeEEEEEcCCCee-eeeeecccceEEEEcCCCcEEEEEcCCc
Confidence 44456666665 455554 357899999875543 3444446799999999999888888877
Q ss_pred -EEEEEeC
Q 017520 241 -CRKYWLK 247 (370)
Q Consensus 241 -l~~~~~~ 247 (370)
+..||+.
T Consensus 322 elQ~FD~A 329 (545)
T PF11768_consen 322 ELQCFDMA 329 (545)
T ss_pred eEEEEEee
Confidence 9999974
No 352
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=57.70 E-value=1.7e+02 Score=27.67 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=40.5
Q ss_pred cceEEcC-CCcEEEEecCCeEEEEe-CCe--EEEEEec--CCCceeceEEcCCCcEEEEeCCCceEEEc
Q 017520 82 EDASMDK-NGVIYTATRDGWIKRLQ-DGT--WVNWKFI--DSQTLVGLTSTKEGHLIICDNANGLHKVS 144 (370)
Q Consensus 82 ~~i~~d~-~G~l~v~~~~g~I~~~~-~g~--~~~~~~~--~~~p~~gl~~d~~G~L~v~~~~~gi~~~~ 144 (370)
-++++|. +..+|.|...|.|.+-+ ..+ +-++... .+..+ +|...|-.++++.....+++.+.
T Consensus 109 F~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY-~m~~~P~DN~~~~~t~~~~V~~~ 176 (609)
T KOG4227|consen 109 FSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVY-HMDQHPTDNTLIVVTRAKLVSFI 176 (609)
T ss_pred EEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCccccee-ecccCCCCceEEEEecCceEEEE
Confidence 3788885 45788888888888887 322 3333332 34678 88888877777766665544443
No 353
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=57.45 E-value=1.8e+02 Score=27.70 Aligned_cols=82 Identities=9% Similarity=0.069 Sum_probs=46.2
Q ss_pred CCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeec-cCCCCCCCceeECCCC
Q 017520 197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDG 274 (370)
Q Consensus 197 ~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~-~~~~g~p~~i~~d~~G 274 (370)
.+..|..+|..|++...-.+.-.....+.++.||..+.-+.... |.++|+... +...-. ......|-...+-.+|
T Consensus 152 ~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~---~~v~e~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG---TVVSEGVAHEGAKPARAIFLASG 228 (472)
T ss_pred CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCC---cEeeecccccCCCcceeEEeccC
Confidence 45678889988887654444222345678999998544444445 999986543 221111 1112234445555667
Q ss_pred CEEEEEe
Q 017520 275 TFWIAII 281 (370)
Q Consensus 275 ~lwv~~~ 281 (370)
.+..+-.
T Consensus 229 ~i~tTGf 235 (472)
T KOG0303|consen 229 KIFTTGF 235 (472)
T ss_pred ceeeecc
Confidence 7555543
No 354
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=56.48 E-value=1.6e+02 Score=26.97 Aligned_cols=67 Identities=19% Similarity=0.181 Sum_probs=37.2
Q ss_pred CCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC--CCccceEEccCCCEEEEEeCC-----c-E
Q 017520 170 SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVVCESW-----K-C 241 (370)
Q Consensus 170 ~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~--~~p~gi~~~~dg~~l~v~~~~-----~-l 241 (370)
-+++||+.-... .......+++||+.+++++.+..-. ......+..-+++ ||+..-. . +
T Consensus 122 ~~~~iYv~GG~~------------~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~-iYv~GG~~~~~~~~~ 188 (323)
T TIGR03548 122 KDGTLYVGGGNR------------NGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNE-LYVFGGGSNIAYTDG 188 (323)
T ss_pred ECCEEEEEeCcC------------CCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCE-EEEEcCCCCccccce
Confidence 468999874320 0112357999999988887654211 1112223333444 7776421 1 6
Q ss_pred EEEEeCCC
Q 017520 242 RKYWLKGE 249 (370)
Q Consensus 242 ~~~~~~~~ 249 (370)
++||++..
T Consensus 189 ~~yd~~~~ 196 (323)
T TIGR03548 189 YKYSPKKN 196 (323)
T ss_pred EEEecCCC
Confidence 78987654
No 355
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=55.67 E-value=2.3e+02 Score=28.38 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=60.7
Q ss_pred EEEEEeCCCCCCceeeeccCCCC-CCCceeECC-CCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCce
Q 017520 241 CRKYWLKGERKGKLETFAENLPG-APDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGA 318 (370)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~~~g-~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (370)
|++|++++.+..-. .. ...+| ..+..+.|. +|++-|++..+... +........
T Consensus 250 I~kf~~~~~~~~y~-~s-g~V~G~llnqFsmdE~~G~LRvaTT~~~~~-----------------------~~~~~~s~N 304 (521)
T PF09826_consen 250 IYKFALDGGKIEYV-GS-GSVPGYLLNQFSMDEYDGYLRVATTSGNWW-----------------------WDSEDTSSN 304 (521)
T ss_pred EEEEEccCCcEEEE-EE-EEECcEEcccccEeccCCEEEEEEecCccc-----------------------ccCCCCceE
Confidence 77777766432111 10 12233 234467776 66788887554110 000134456
Q ss_pred EEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCC-CeEEEEeC
Q 017520 319 HLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS-NFIGKVQL 369 (370)
Q Consensus 319 ~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~-~~i~~~~~ 369 (370)
.|+.+|++-+++-.+.+-. ....+-++.+.+++.|+-++.. .-+-.++|
T Consensus 305 ~lyVLD~~L~~vG~l~~la--~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDL 354 (521)
T PF09826_consen 305 NLYVLDEDLKIVGSLEGLA--PGERIYSVRFMGDRAYLVTFRQVDPLFVIDL 354 (521)
T ss_pred EEEEECCCCcEeEEccccC--CCceEEEEEEeCCeEEEEEEeecCceEEEEC
Confidence 7888898888888776532 2346788999999999999886 34445554
No 356
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.88 E-value=33 Score=33.68 Aligned_cols=65 Identities=14% Similarity=0.048 Sum_probs=47.5
Q ss_pred CCcceEEcCCCcEEEEecCCeEEEEe-CC-eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc
Q 017520 80 HPEDASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS 144 (370)
Q Consensus 80 ~P~~i~~d~~G~l~v~~~~g~I~~~~-~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~ 144 (370)
+=.|++...+|+|-+|+.+|.|.-++ .| ..++..+..|.+...+-+..+|...+|.-..-++.++
T Consensus 432 nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~ 498 (644)
T KOG2395|consen 432 NFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLID 498 (644)
T ss_pred ccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEE
Confidence 34567778899999999999898888 44 3445455566665578888999988887665566655
No 357
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=51.64 E-value=1.6e+02 Score=25.60 Aligned_cols=56 Identities=14% Similarity=0.338 Sum_probs=33.9
Q ss_pred ccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520 221 ANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 280 (370)
Q Consensus 221 p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~ 280 (370)
...++++|.|+ |+++.... ...||+.|.+. .+.|.. ...-.+-+.+++.-++.+++
T Consensus 234 vaav~vdpsgr-ll~sg~~dssc~lydirg~r~--iq~f~p-hsadir~vrfsp~a~yllt~ 291 (350)
T KOG0641|consen 234 VAAVAVDPSGR-LLASGHADSSCMLYDIRGGRM--IQRFHP-HSADIRCVRFSPGAHYLLTC 291 (350)
T ss_pred eEEEEECCCcc-eeeeccCCCceEEEEeeCCce--eeeeCC-CccceeEEEeCCCceEEEEe
Confidence 45689999998 66665544 89999988643 233432 22224456677655554444
No 358
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=50.85 E-value=2e+02 Score=26.44 Aligned_cols=59 Identities=22% Similarity=0.318 Sum_probs=37.5
Q ss_pred CCCceeceEEcCCCcEEEEeCCCc-eEE-Ec-CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeC
Q 017520 116 DSQTLVGLTSTKEGHLIICDNANG-LHK-VS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVS 179 (370)
Q Consensus 116 ~~~p~~gl~~d~~G~L~v~~~~~g-i~~-~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~ 179 (370)
..... .++..-+|.+..+...+| +.| ++ .+| +.++. .|.....+..|+++++... ++.+
T Consensus 181 ~s~Ia-cv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R---RG~d~A~iy~iaFSp~~s~-Lavs 244 (346)
T KOG2111|consen 181 DSDIA-CVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR---RGVDRADIYCIAFSPNSSW-LAVS 244 (346)
T ss_pred cCcee-EEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee---cCCchheEEEEEeCCCccE-EEEE
Confidence 34445 788889999888766555 444 45 567 45443 3333346788999998763 4433
No 359
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=49.85 E-value=2.3e+02 Score=26.85 Aligned_cols=114 Identities=10% Similarity=-0.011 Sum_probs=61.8
Q ss_pred CCceeceEEcCCCcEEEEeCCC-ceEEEcCCC--eEEEEe--ecCCccc-ccccceEEcCCCcEEEEeCCCCCCCcccee
Q 017520 117 SQTLVGLTSTKEGHLIICDNAN-GLHKVSEDG--VENFLS--YVNGSKL-RFANDVVEASDGSLYFTVSSSKYLPHEYCL 190 (370)
Q Consensus 117 ~~p~~gl~~d~~G~L~v~~~~~-gi~~~~~~g--~~~~~~--~~~g~~~-~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~ 190 (370)
|-.+ +|.|+.+|..++..... .+..++-+. ...... ...+.+. ..+..|+++...+..++-.
T Consensus 57 GCiN-AlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~----------- 124 (609)
T KOG4227|consen 57 GCIN-ALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE----------- 124 (609)
T ss_pred cccc-eeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC-----------
Confidence 4456 78888777766654332 233332111 111100 0122222 3566789988776555532
Q ss_pred cccccCCCceEEEEeCCCCeEEEEecCC---CCccceEEccCCCEEEEEeCCc-EEEEEeCC
Q 017520 191 DILEGKPHGQLLKYDPSSNITTLVADGF---YFANGVALSRDEDYVVVCESWK-CRKYWLKG 248 (370)
Q Consensus 191 ~~~~~~~~g~l~~~d~~t~~~~~~~~~~---~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~ 248 (370)
..+.|++-|.++++...++..- ....++..+|-.+.+.+....+ |..+|...
T Consensus 125 ------~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd 180 (609)
T KOG4227|consen 125 ------RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRD 180 (609)
T ss_pred ------CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccC
Confidence 3467888888777665444321 2345777788666555555555 66676543
No 360
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=49.46 E-value=2.5e+02 Score=26.97 Aligned_cols=138 Identities=10% Similarity=-0.018 Sum_probs=73.5
Q ss_pred CCcEEEEecCCeEEEEe-C--Ce------EE-EEEecCCCceeceEEcCC-CcEEEEeCCCc-eEEEc-CCC---eEEEE
Q 017520 89 NGVIYTATRDGWIKRLQ-D--GT------WV-NWKFIDSQTLVGLTSTKE-GHLIICDNANG-LHKVS-EDG---VENFL 152 (370)
Q Consensus 89 ~G~l~v~~~~g~I~~~~-~--g~------~~-~~~~~~~~p~~gl~~d~~-G~L~v~~~~~g-i~~~~-~~g---~~~~~ 152 (370)
.|.|..++.++.|..++ + +. .+ .+........ .+++.+. ..||.+-...+ +...| +.+ .....
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~Ve-DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~ 268 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVE-DVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV 268 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCccee-hhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc
Confidence 67788888888999988 2 11 11 1222222233 4444432 34555433333 44444 322 11111
Q ss_pred eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCC--eEEEEecCCCCccceEEccCC
Q 017520 153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--ITTLVADGFYFANGVALSRDE 230 (370)
Q Consensus 153 ~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~--~~~~~~~~~~~p~gi~~~~dg 230 (370)
. .--.-+|.+++.|-+...++..+ .+++|..+|...- ....+...-.....+.++|+.
T Consensus 269 ~----ah~~~vn~~~fnp~~~~ilAT~S----------------~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~ 328 (422)
T KOG0264|consen 269 K----AHSAEVNCVAFNPFNEFILATGS----------------ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN 328 (422)
T ss_pred c----ccCCceeEEEeCCCCCceEEecc----------------CCCcEEEeechhcccCceeccCCCcceEEEEeCCCC
Confidence 1 11135788899886654444443 4678999987521 111122222344678899988
Q ss_pred CEEEEEeCC-c-EEEEEeC
Q 017520 231 DYVVVCESW-K-CRKYWLK 247 (370)
Q Consensus 231 ~~l~v~~~~-~-l~~~~~~ 247 (370)
..++.+... + +.++|+.
T Consensus 329 etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 329 ETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred CceeEecccCCcEEEEecc
Confidence 766666543 3 8888875
No 361
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=49.31 E-value=1.2e+02 Score=28.58 Aligned_cols=109 Identities=18% Similarity=0.199 Sum_probs=58.0
Q ss_pred CCCcceEEcC-CCcEEEEecCCeEEEEe--C---CeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCC--e
Q 017520 79 NHPEDASMDK-NGVIYTATRDGWIKRLQ--D---GTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG--V 148 (370)
Q Consensus 79 ~~P~~i~~d~-~G~l~v~~~~g~I~~~~--~---g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g--~ 148 (370)
..|+.+.+.. +-.+-+++..|.++.++ . +..+.......... .+++.+|+...+.....+-.++. +.- +
T Consensus 108 ~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~-dVavS~D~~~IitaDRDEkIRvs~ypa~f~I 186 (390)
T KOG3914|consen 108 KRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLL-DVAVSPDDQFIITADRDEKIRVSRYPATFVI 186 (390)
T ss_pred cCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhh-eeeecCCCCEEEEecCCceEEEEecCcccch
Confidence 3577777764 44677777777788777 2 33333333333445 78888888755543233333332 211 2
Q ss_pred EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe
Q 017520 149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI 210 (370)
Q Consensus 149 ~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~ 210 (370)
+.+. -|. -.++..+++.++-.||=+ + +++.|+.||-.+++
T Consensus 187 esfc---lGH-~eFVS~isl~~~~~LlS~-s-----------------GD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 187 ESFC---LGH-KEFVSTISLTDNYLLLSG-S-----------------GDKTLRLWDITSGK 226 (390)
T ss_pred hhhc---ccc-HhheeeeeeccCceeeec-C-----------------CCCcEEEEecccCC
Confidence 2221 111 146777777654443322 2 45677777765553
No 362
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=49.11 E-value=53 Score=19.22 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.4
Q ss_pred CCCceEEEEECCCCcE
Q 017520 314 LGGGAHLIHVAEDGTI 329 (370)
Q Consensus 314 ~~~~g~v~~~~~~g~~ 329 (370)
....|-|++++++|..
T Consensus 13 ~~~~GTvf~~~~~g~~ 28 (34)
T TIGR03803 13 ASGFGTLYRLSTAGGT 28 (34)
T ss_pred CCCceeEEEEcCCCCe
Confidence 5567889999999887
No 363
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=47.81 E-value=3.4e+02 Score=28.20 Aligned_cols=103 Identities=16% Similarity=0.234 Sum_probs=55.2
Q ss_pred CCceEEEEeCCC----CeEEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeE
Q 017520 197 PHGQLLKYDPSS----NITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINL 270 (370)
Q Consensus 197 ~~g~l~~~d~~t----~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~ 270 (370)
.+|.|..||..- +....+-..-+..+-+.|++-.-.++++.... |..||+...+. ...+..+... .+.+.+
T Consensus 108 ~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S--~~t~~~nSES-iRDV~f 184 (839)
T KOG0269|consen 108 TNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS--KSTFRSNSES-IRDVKF 184 (839)
T ss_pred CCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc--cccccccchh-hhceee
Confidence 568888888753 11122233445678888988766677776654 88899865421 1122212222 344554
Q ss_pred CC-CCCEEEEEecCc-hhHHHhhhcchhHHHHHH
Q 017520 271 AP-DGTFWIAIIKLD-ARRMKILNSSKLIKHVLA 302 (370)
Q Consensus 271 d~-~G~lwv~~~~~~-~~~~~~~~~~~~~~~~~~ 302 (370)
.+ .++.+++...+. .+.||+=.+....+++.+
T Consensus 185 sp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A 218 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA 218 (839)
T ss_pred ccCCCceEEEecCCceEEEeeccCchhHHHHhhc
Confidence 43 467777765543 244443333333444443
No 364
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.40 E-value=1.4e+02 Score=30.66 Aligned_cols=94 Identities=12% Similarity=0.152 Sum_probs=51.7
Q ss_pred CCCcceEEcCCCcEE-EEecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeC-CCceEEEc--CCC-eEE
Q 017520 79 NHPEDASMDKNGVIY-TATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDN-ANGLHKVS--EDG-VEN 150 (370)
Q Consensus 79 ~~P~~i~~d~~G~l~-v~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~-~~gi~~~~--~~g-~~~ 150 (370)
..-++|.++.+-.|. .|..+|.|..|| .++ +.++......+. .+.|.|-|....... ...+-.+| +.| ...
T Consensus 71 spIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~-sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 71 SPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNIT-SVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred CcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcc-eeeeccceEEeccccccccceehhhhccCceee
Confidence 356888888654444 555788888888 443 333322223344 667777665552211 12344444 355 443
Q ss_pred EEeecCCcccccccceEEcCCCcEEEEeC
Q 017520 151 FLSYVNGSKLRFANDVVEASDGSLYFTVS 179 (370)
Q Consensus 151 ~~~~~~g~~~~~~~~l~~d~~G~l~v~d~ 179 (370)
+ .+ ....++-+.+.|+|+ |+.+.
T Consensus 150 ~----~s-~~~vv~~l~lsP~Gr-~v~~g 172 (825)
T KOG0267|consen 150 Y----KS-HTRVVDVLRLSPDGR-WVASG 172 (825)
T ss_pred e----cC-CcceeEEEeecCCCc-eeecc
Confidence 3 22 123566788899998 55554
No 365
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=47.39 E-value=3.3e+02 Score=27.90 Aligned_cols=75 Identities=12% Similarity=-0.020 Sum_probs=44.0
Q ss_pred ccccccceEEcCCCcEEE--EeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCC-ccceEEccCCCEEEE
Q 017520 159 KLRFANDVVEASDGSLYF--TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF-ANGVALSRDEDYVVV 235 (370)
Q Consensus 159 ~~~~~~~l~~d~~G~l~v--~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~-p~gi~~~~dg~~l~v 235 (370)
.+..+-++.+++|+++.+ -|.. +...-.|...|..+++.. ...+.. ..++++..|++.+|.
T Consensus 127 ~f~~Lg~~~~s~D~~~la~s~D~~--------------G~e~y~lr~kdL~tg~~~--~d~i~~~~~~~~Wa~d~~~lfY 190 (682)
T COG1770 127 DFFSLGAASISPDHNLLAYSVDVL--------------GDEQYTLRFKDLATGEEL--PDEITNTSGSFAWAADGKTLFY 190 (682)
T ss_pred cceeeeeeeeCCCCceEEEEEecc--------------cccEEEEEEEeccccccc--chhhcccccceEEecCCCeEEE
Confidence 344556678888887433 3321 112234666677766542 233333 567899999998888
Q ss_pred EeCCc------EEEEEeCCC
Q 017520 236 CESWK------CRKYWLKGE 249 (370)
Q Consensus 236 ~~~~~------l~~~~~~~~ 249 (370)
+.... |++..+.++
T Consensus 191 t~~d~~~rp~kv~~h~~gt~ 210 (682)
T COG1770 191 TRLDENHRPDKVWRHRLGTP 210 (682)
T ss_pred EEEcCCCCcceEEEEecCCC
Confidence 76432 666666553
No 366
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=46.05 E-value=2.2e+02 Score=29.45 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=62.2
Q ss_pred ceEEcCCCcEEE-EeCCCceEEEc-CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCC
Q 017520 122 GLTSTKEGHLII-CDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 197 (370)
Q Consensus 122 gl~~d~~G~L~v-~~~~~gi~~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~ 197 (370)
.|++|+.-.+.+ +.-+..|..++ .+| .+.+... .+. .+.+-.+..||.|. |++.+- .
T Consensus 601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs-~~~-eG~lIKv~lDPSgi-Y~atSc----------------s 661 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS-RDH-EGDLIKVILDPSGI-YLATSC----------------S 661 (1080)
T ss_pred EeeeCCCcceEEEEecccceEEEeccccceeeeeccc-ccC-CCceEEEEECCCcc-EEEEee----------------c
Confidence 566666554333 23335677777 666 4433222 111 13455677788775 555431 3
Q ss_pred CceEEEEeCCCCeEEEEecCC-CCccceEEccCCCEEEEEeCCc-EEEEEeC
Q 017520 198 HGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDYVVVCESWK-CRKYWLK 247 (370)
Q Consensus 198 ~g~l~~~d~~t~~~~~~~~~~-~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~ 247 (370)
+..|..||-.+++.-....+. -...|+-|.+|=++|+-....+ |++|.+.
T Consensus 662 dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 662 DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred CCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 456888887777664333332 2457889999988777777666 7766653
No 367
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=45.58 E-value=2.5e+02 Score=27.22 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=19.3
Q ss_pred CCCcEEEEeCCCCCCCccceecccccCC-CceEEEEeCCCCeEE
Q 017520 170 SDGSLYFTVSSSKYLPHEYCLDILEGKP-HGQLLKYDPSSNITT 212 (370)
Q Consensus 170 ~~G~l~v~d~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~t~~~~ 212 (370)
.+|.+|++.... .. ...||++|+.+.+.+
T Consensus 400 e~G~aYi~Vtt~--------------~g~~~~IY~iDp~TatAt 429 (435)
T PF14298_consen 400 ENGKAYIPVTTE--------------DGSDPYIYKIDPATATAT 429 (435)
T ss_pred eCCEEEEEEeec--------------CCCceeEEEEcCcccccc
Confidence 578899885421 12 247999999877543
No 368
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=44.45 E-value=1.5e+02 Score=29.59 Aligned_cols=64 Identities=8% Similarity=0.001 Sum_probs=45.3
Q ss_pred CCcceEEcC-CCcEEEEecCCeEEEEe-CCeEEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc
Q 017520 80 HPEDASMDK-NGVIYTATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS 144 (370)
Q Consensus 80 ~P~~i~~d~-~G~l~v~~~~g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~ 144 (370)
.+.+.+..+ +..+.+|..||.|..|+ +-.........-.|. -++..++|.+++.... +.+..+|
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~-~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPT-LIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccce-EEEEcCCCcEEEEEcCCceEEEEE
Confidence 566667775 44677888999999999 544555554455678 8999999987665545 4466676
No 369
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=43.79 E-value=3.5e+02 Score=27.09 Aligned_cols=112 Identities=10% Similarity=0.005 Sum_probs=58.6
Q ss_pred CCCceeceEEcCCCcEEEEeCC-CceEEEcCCC---eEEEEeecCCcccccccceEEcC--CCcEEEEeCCCCCCCccce
Q 017520 116 DSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG---VENFLSYVNGSKLRFANDVVEAS--DGSLYFTVSSSKYLPHEYC 189 (370)
Q Consensus 116 ~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~~~g---~~~~~~~~~g~~~~~~~~l~~d~--~G~l~v~d~~~~~~~~~~~ 189 (370)
.|-.+ .+....||.+++...+ .++..+++-. +..+.. |. ...+..+-+-| ..++.++..
T Consensus 50 ~GCVN-~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T---gH-taNIFsvKFvP~tnnriv~sgA---------- 114 (758)
T KOG1310|consen 50 TGCVN-CLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST---GH-TANIFSVKFVPYTNNRIVLSGA---------- 114 (758)
T ss_pred cceec-ceeecCCCCEEeecCCcceEEeecchhcceeeeeec---cc-ccceeEEeeeccCCCeEEEecc----------
Confidence 45567 8899999998887555 4666666322 222211 11 01122222222 234555533
Q ss_pred ecccccCCCceEEEEeCCCCeEEEEe-----------cCCCCccceEEccCC-CEEEEEeCCc-EEEEEeCCC
Q 017520 190 LDILEGKPHGQLLKYDPSSNITTLVA-----------DGFYFANGVALSRDE-DYVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 190 ~~~~~~~~~g~l~~~d~~t~~~~~~~-----------~~~~~p~gi~~~~dg-~~l~v~~~~~-l~~~~~~~~ 249 (370)
++..|..+|.+..+-.-.. .......-|+..+++ +.+|.+...+ +..||+..+
T Consensus 115 -------gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 115 -------GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred -------CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 3445666665421111000 111223456777777 6677777777 999998764
No 370
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=41.70 E-value=5e+02 Score=28.30 Aligned_cols=106 Identities=12% Similarity=0.081 Sum_probs=58.9
Q ss_pred EEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHh
Q 017520 225 ALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA 303 (370)
Q Consensus 225 ~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (370)
|+.+-++.+ .+..++ ++.|++...+.-....+ ...|.....+..- ..+++||+.+..
T Consensus 940 Ai~~f~~~~-LagvG~~l~~YdlG~K~lLRk~e~-k~~p~~Is~iqt~-~~RI~VgD~qeS------------------- 997 (1205)
T KOG1898|consen 940 AICPFQGRV-LAGVGRFLRLYDLGKKKLLRKCEL-KFIPNRISSIQTY-GARIVVGDIQES------------------- 997 (1205)
T ss_pred EEeccCCEE-EEecccEEEEeeCChHHHHhhhhh-ccCceEEEEEeec-ceEEEEeeccce-------------------
Confidence 455555534 444555 99998743322111111 1122223333332 237999987641
Q ss_pred CCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEE-CCEEEEEeCCCC-eEEEEe
Q 017520 304 YPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSN-FIGKVQ 368 (370)
Q Consensus 304 ~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~~~~-~i~~~~ 368 (370)
...+++.++++.+..|-+.. - -.+++....- .+++-.+...|| .+.|++
T Consensus 998 --------------V~~~~y~~~~n~l~~fadD~-~-pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 998 --------------VHFVRYRREDNQLIVFADDP-V-PRHVTALELLDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred --------------EEEEEEecCCCeEEEEeCCC-c-cceeeEEEEecCCceeeccccCcEEEEECC
Confidence 34677888888888776633 1 2355555444 478888888777 555554
No 371
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=40.99 E-value=1.1e+02 Score=28.40 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=30.2
Q ss_pred ccCCCceEEEEeCCCCeE---EEEec--CCCCccceEEccCCCEEEEEeCCc-EEEEEe
Q 017520 194 EGKPHGQLLKYDPSSNIT---TLVAD--GFYFANGVALSRDEDYVVVCESWK-CRKYWL 246 (370)
Q Consensus 194 ~~~~~g~l~~~d~~t~~~---~~~~~--~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~ 246 (370)
-+...|.|+.+|.+...- ..+.. ......-.+++.||..|+.....+ |+|+|.
T Consensus 324 ~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 344567888888753322 11211 122334578889998544444444 999973
No 372
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=40.44 E-value=97 Score=31.50 Aligned_cols=81 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred ccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE-EecCCCCccceEEccCCCEEEEEeCCc-
Q 017520 163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWK- 240 (370)
Q Consensus 163 ~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~-~~~~~~~p~gi~~~~dg~~l~v~~~~~- 240 (370)
+..++++++|++..+. .-........|+.|+..+..... +...-....-++|++||++|.-....+
T Consensus 528 v~~l~~s~~gnliASa------------CKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 528 VYALAISPTGNLIASA------------CKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred EEEEEecCCCCEEeeh------------hhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce
Q ss_pred EEEEEeCCCCCCcee
Q 017520 241 CRKYWLKGERKGKLE 255 (370)
Q Consensus 241 l~~~~~~~~~~~~~~ 255 (370)
+..|.........++
T Consensus 596 ~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 596 VSLYEVQEDIKDEFR 610 (764)
T ss_pred EEeeeeecccchhhh
No 373
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=40.00 E-value=1.8e+02 Score=25.70 Aligned_cols=70 Identities=20% Similarity=0.147 Sum_probs=45.8
Q ss_pred cccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cC----C-CCccceEEccCCCEEE
Q 017520 162 FANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DG----F-YFANGVALSRDEDYVV 234 (370)
Q Consensus 162 ~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~----~-~~p~gi~~~~dg~~l~ 234 (370)
.+-+|.+-| +|.||--.. .++||.+|+.++..+.+- .. + ....|+.|.|--+.|-
T Consensus 28 ~l~GID~Rpa~G~LYgl~~------------------~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlR 89 (236)
T PF14339_consen 28 SLVGIDFRPANGQLYGLGS------------------TGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLR 89 (236)
T ss_pred eEEEEEeecCCCCEEEEeC------------------CCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEE
Confidence 344555544 688887743 489999999999877662 11 1 1246778887655566
Q ss_pred EEeCCc-EEEEEeCCC
Q 017520 235 VCESWK-CRKYWLKGE 249 (370)
Q Consensus 235 v~~~~~-l~~~~~~~~ 249 (370)
+....+ -+|++++..
T Consensus 90 vvs~~GqNlR~npdtG 105 (236)
T PF14339_consen 90 VVSNTGQNLRLNPDTG 105 (236)
T ss_pred EEccCCcEEEECCCCC
Confidence 665555 788887654
No 374
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=39.88 E-value=83 Score=29.91 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=23.4
Q ss_pred cceEEccCCCEEEEEeCCc--EEEEEeCCC
Q 017520 222 NGVALSRDEDYVVVCESWK--CRKYWLKGE 249 (370)
Q Consensus 222 ~gi~~~~dg~~l~v~~~~~--l~~~~~~~~ 249 (370)
..+.+|-|.++||++..-. |++||++++
T Consensus 315 TDilISmDDRFLYvs~WLHGDirQYdIsDP 344 (476)
T KOG0918|consen 315 TDILISLDDRFLYVSNWLHGDIRQYDISDP 344 (476)
T ss_pred heeEEeecCcEEEEEeeeecceeeeccCCC
Confidence 3467888999999999865 999999876
No 375
>PF13964 Kelch_6: Kelch motif
Probab=39.38 E-value=60 Score=20.26 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=23.3
Q ss_pred CCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE
Q 017520 170 SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV 214 (370)
Q Consensus 170 ~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~ 214 (370)
-+++||+.-..... ......+++||+++++++.+
T Consensus 10 ~~~~iyv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~ 43 (50)
T PF13964_consen 10 VGGKIYVFGGYDNS-----------GKYSNDVERYDPETNTWEQL 43 (50)
T ss_pred ECCEEEEECCCCCC-----------CCccccEEEEcCCCCcEEEC
Confidence 46789988543210 12456899999999888765
No 376
>PLN02193 nitrile-specifier protein
Probab=39.21 E-value=3.8e+02 Score=26.24 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=27.6
Q ss_pred ceEEEEeCCCCeEEEEecCC--CCc---cceEEccCCCEEEEEeCC------c-EEEEEeCCC
Q 017520 199 GQLLKYDPSSNITTLVADGF--YFA---NGVALSRDEDYVVVCESW------K-CRKYWLKGE 249 (370)
Q Consensus 199 g~l~~~d~~t~~~~~~~~~~--~~p---~gi~~~~dg~~l~v~~~~------~-l~~~~~~~~ 249 (370)
..+++||+.+.+++.+.... ..| ..++. -++ .+|+..-. . +.+||+...
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~-~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEE-NVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECC-EEEEECCCCCCCCcceEEEEECCCC
Confidence 56999999988887654321 111 12222 233 46765421 1 788887543
No 377
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=39.11 E-value=85 Score=20.65 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=29.7
Q ss_pred CceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeC
Q 017520 266 DNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD 335 (370)
Q Consensus 266 ~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~ 335 (370)
..+++.+||+|.++-..... .......+.+++++|.+=.+|..
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~---------------------------~~~~~~~l~Rln~DGsLDttFg~ 46 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNS---------------------------SGNNDFVLARLNADGSLDTTFGT 46 (55)
T ss_pred EEEEECCCCcEEEEEEeecC---------------------------CCcccEEEEEECCCCCccCCcCC
Confidence 35778889998888643210 02334569999999999888844
No 378
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.01 E-value=3.1e+02 Score=25.18 Aligned_cols=208 Identities=11% Similarity=0.042 Sum_probs=0.0
Q ss_pred eEEcCCCcEEEEecCCeEEEEe-CCeEEEEEecCCCceeceEEcCCCcEEEEeC----------------------CCce
Q 017520 84 ASMDKNGVIYTATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDN----------------------ANGL 140 (370)
Q Consensus 84 i~~d~~G~l~v~~~~g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~----------------------~~gi 140 (370)
+|++......=.+....||++. =|..-+ .+|..+ .-..-.|+.||++.+ .+.|
T Consensus 5 lAfeaeahfi~~~d~~~iY~felvG~~P~---SGGDTY-NAV~~vDd~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHV 80 (339)
T PF09910_consen 5 LAFEAEAHFIDRDDSEKIYRFELVGPPPT---SGGDTY-NAVEWVDDFIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHV 80 (339)
T ss_pred EEeeeeeEEEecCCceEEEEeeeccCCCC---CCCccc-eeeeeecceEEEeeeecCCceeeeccCCceEEEEeeccceE
Q ss_pred EEEc-CCC-eEEEEeecCCcccc---cccceEEcC-CCcEEEE--eCCCCCCCccceecccccCCCceEEEEeCCCCeEE
Q 017520 141 HKVS-EDG-VENFLSYVNGSKLR---FANDVVEAS-DGSLYFT--VSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT 212 (370)
Q Consensus 141 ~~~~-~~g-~~~~~~~~~g~~~~---~~~~l~~d~-~G~l~v~--d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~ 212 (370)
..+| +++ ++.+....-..+.. .+.+|.-|| +.+|+++ |.- .+-+||.+|.++++.+
T Consensus 81 H~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh----------------~nLGvy~ldr~~g~~~ 144 (339)
T PF09910_consen 81 HEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGH----------------ANLGVYSLDRRTGKAE 144 (339)
T ss_pred EEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCCc----------------ceeeeEEEcccCCcee
Q ss_pred EEecCCCCccceEEccCCCEEEEEeCCc-------EEEEEeCCCCCCceeeeccCCCCCCCc---------eeECCCCCE
Q 017520 213 LVADGFYFANGVALSRDEDYVVVCESWK-------CRKYWLKGERKGKLETFAENLPGAPDN---------INLAPDGTF 276 (370)
Q Consensus 213 ~~~~~~~~p~gi~~~~dg~~l~v~~~~~-------l~~~~~~~~~~~~~~~~~~~~~g~p~~---------i~~d~~G~l 276 (370)
.+... ..+.|..+. +..+++- .. |.++|+...+. ..+.| ..+..+|+ -.....+++
T Consensus 145 ~L~~~-ps~KG~~~~---D~a~F~i-~~~~~g~~~i~~~Dli~~~~-~~e~f--~~~~s~Dg~~~~~~~~G~~~s~ynR~ 216 (339)
T PF09910_consen 145 KLSSN-PSLKGTLVH---DYACFGI-NNFHKGVSGIHCLDLISGKW-VIESF--DVSLSVDGGPVIRPELGAMASAYNRL 216 (339)
T ss_pred eccCC-CCcCceEee---eeEEEec-cccccCCceEEEEEccCCeE-EEEec--ccccCCCCCceEeeccccEEEEeeeE
Q ss_pred EEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEeCCCCCccccceeEEEECCEEE
Q 017520 277 WIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLY 355 (370)
Q Consensus 277 wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~~g~L~ 355 (370)
|.-..++ ++..||- ++..+-+.--+ +.....+-.+-+.|.
T Consensus 217 faF~rGG------------------------------------i~vgnP~~~e~~~f~RlfD---f~~~~yap~R~nal~ 257 (339)
T PF09910_consen 217 FAFVRGG------------------------------------IFVGNPYNGEEFRFYRLFD---FPYTFYAPFRVNALP 257 (339)
T ss_pred EEEEecc------------------------------------EEEeCCCCCCceeEEEeee---ccCCccCcceecceE
Q ss_pred EEe
Q 017520 356 VIS 358 (370)
Q Consensus 356 ~gs 358 (370)
+|+
T Consensus 258 ~gG 260 (339)
T PF09910_consen 258 IGG 260 (339)
T ss_pred eCC
No 379
>PRK13614 lipoprotein LpqB; Provisional
Probab=38.56 E-value=4.4e+02 Score=26.75 Aligned_cols=94 Identities=17% Similarity=0.246 Sum_probs=49.2
Q ss_pred EEcCCCcEEEEecC--CeEEEEe-CCe--EE-----EEE--ecCCC-ceeceEEcCCC-cE-EEEeCCCc--eEE--Ec-
Q 017520 85 SMDKNGVIYTATRD--GWIKRLQ-DGT--WV-----NWK--FIDSQ-TLVGLTSTKEG-HL-IICDNANG--LHK--VS- 144 (370)
Q Consensus 85 ~~d~~G~l~v~~~~--g~I~~~~-~g~--~~-----~~~--~~~~~-p~~gl~~d~~G-~L-~v~~~~~g--i~~--~~- 144 (370)
.+|.+|.+|+...+ +.|.++. +|. .. ... -..++ .. .+.+++|| ++ .|...+++ |+. +.
T Consensus 389 S~d~~g~vWtv~~g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~-~lrvSrDG~R~Avi~~~~g~~~V~va~V~R 467 (573)
T PRK13614 389 SFSPQDWVWTAGPGGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVK-ELRVSREGVRALVISEQNGKSRVQVAGIVR 467 (573)
T ss_pred cccCCCCEEEeeCCCCceEEEEecCCCcccccccceeecccccCCCeeE-EEEECCCccEEEEEEEeCCccEEEEEEEEe
Confidence 67888899988743 4788877 442 11 111 11233 55 88899999 33 33322222 322 22
Q ss_pred -CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeC
Q 017520 145 -EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVS 179 (370)
Q Consensus 145 -~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~ 179 (370)
.+| -+.+.....-.....+.++++-.++.|.+...
T Consensus 468 ~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~~ 504 (573)
T PRK13614 468 NEDGTPRELTAPITLAADSDADTGAWVGDSTVVVTKA 504 (573)
T ss_pred CCCCCeEEccCceecccCCCcceeEEcCCCEEEEEec
Confidence 344 23332221111124566777777778777753
No 380
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=37.27 E-value=3.9e+02 Score=25.79 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=18.8
Q ss_pred EEEEEeCCCCCCceeeeccCCCCCCCc--eeECCCCCEEEE
Q 017520 241 CRKYWLKGERKGKLETFAENLPGAPDN--INLAPDGTFWIA 279 (370)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~~~g~p~~--i~~d~~G~lwv~ 279 (370)
|++|++++-+-...+. ....|.--.| +.+.++|.|+|=
T Consensus 209 vy~FdLdtykW~Klep-sga~PtpRSGcq~~vtpqg~i~vy 248 (521)
T KOG1230|consen 209 VYAFDLDTYKWSKLEP-SGAGPTPRSGCQFSVTPQGGIVVY 248 (521)
T ss_pred eEEEeccceeeeeccC-CCCCCCCCCcceEEecCCCcEEEE
Confidence 8889887653322222 1111111122 556777776654
No 381
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=36.74 E-value=3.6e+02 Score=25.19 Aligned_cols=178 Identities=8% Similarity=0.019 Sum_probs=88.7
Q ss_pred CcEEEEecCCeEEEEe--CC-eEEEEEecCCCceeceEEcC--CC-cEEEEeCCCceEEEc-CC-C-e-EEEEeecCCcc
Q 017520 90 GVIYTATRDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTK--EG-HLIICDNANGLHKVS-ED-G-V-ENFLSYVNGSK 159 (370)
Q Consensus 90 G~l~v~~~~g~I~~~~--~g-~~~~~~~~~~~p~~gl~~d~--~G-~L~v~~~~~gi~~~~-~~-g-~-~~~~~~~~g~~ 159 (370)
..+-++-.+|.|..++ +| ..+.+.......+ +++|-. .. .++.+...+-|..+| +. + . +......++.+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N-~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTN-GVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCccc-ceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 3567777899999998 33 4556655555566 888754 23 466666554566666 32 2 1 11111112211
Q ss_pred cccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE--EEEec-CCCCccceEEccCCCEEEEE
Q 017520 160 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT--TLVAD-GFYFANGVALSRDEDYVVVC 236 (370)
Q Consensus 160 ~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~--~~~~~-~~~~p~gi~~~~dg~~l~v~ 236 (370)
.+.++..-.+++.-+..- .......|+.||....+. ..+.. .-.-..-+.|.|..-.++++
T Consensus 120 ---f~~ld~nck~~ii~~GtE-------------~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlS 183 (376)
T KOG1188|consen 120 ---FICLDLNCKKNIIACGTE-------------LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLS 183 (376)
T ss_pred ---ceEeeccCcCCeEEeccc-------------cccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEe
Confidence 122333335566554321 112345677888643221 11111 11224567788865445555
Q ss_pred eC-Cc-EEEEEeCCCCCCc-eeeeccCCCCCCCceeECCCC--CEEEEEecCch
Q 017520 237 ES-WK-CRKYWLKGERKGK-LETFAENLPGAPDNINLAPDG--TFWIAIIKLDA 285 (370)
Q Consensus 237 ~~-~~-l~~~~~~~~~~~~-~~~~~~~~~g~p~~i~~d~~G--~lwv~~~~~~~ 285 (370)
.+ .+ +..||.+.+.... ..... +...-..-+..-+++ +||.-+.....
T Consensus 184 GSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf 236 (376)
T KOG1188|consen 184 GSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETF 236 (376)
T ss_pred ecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCce
Confidence 54 55 8899987652111 00111 111112334455666 67777766543
No 382
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=36.23 E-value=3.5e+02 Score=24.88 Aligned_cols=107 Identities=19% Similarity=0.178 Sum_probs=55.4
Q ss_pred CCceeceEEcC-CCcEEEEeCCCc-eEEEc--CCC-eEEEE-eecCCcccccccceEEcCCCcEEEEeCCCCCCCcccee
Q 017520 117 SQTLVGLTSTK-EGHLIICDNANG-LHKVS--EDG-VENFL-SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCL 190 (370)
Q Consensus 117 ~~p~~gl~~d~-~G~L~v~~~~~g-i~~~~--~~g-~~~~~-~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~ 190 (370)
.... .|+|+| ...+.++....+ |..++ .+| ...-+ .... .-+-++++..||+..|+..
T Consensus 28 DsIS-~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~----~PvL~v~WsddgskVf~g~----------- 91 (347)
T KOG0647|consen 28 DSIS-ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD----GPVLDVCWSDDGSKVFSGG----------- 91 (347)
T ss_pred cchh-eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccC----CCeEEEEEccCCceEEeec-----------
Confidence 3345 789998 556665543333 33333 345 21110 0111 1345788888996444422
Q ss_pred cccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccC-CCEEEEEeCCc-EEEEE
Q 017520 191 DILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD-EDYVVVCESWK-CRKYW 245 (370)
Q Consensus 191 ~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~d-g~~l~v~~~~~-l~~~~ 245 (370)
.++.+-.+|..++++..+...-.-...+.+-+. +..++++.+.. -.+||
T Consensus 92 ------~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfW 142 (347)
T KOG0647|consen 92 ------CDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFW 142 (347)
T ss_pred ------cCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeec
Confidence 356788889988888766533222223333222 22356666555 44554
No 383
>KOG4328 consensus WD40 protein [Function unknown]
Probab=36.20 E-value=4.1e+02 Score=25.79 Aligned_cols=139 Identities=14% Similarity=0.149 Sum_probs=69.0
Q ss_pred CceeceEEcCCCcEEEEeCC-CceEEE-c-CC--CeE-EEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCcccee
Q 017520 118 QTLVGLTSTKEGHLIICDNA-NGLHKV-S-ED--GVE-NFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCL 190 (370)
Q Consensus 118 ~p~~gl~~d~~G~L~v~~~~-~gi~~~-~-~~--g~~-~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~ 190 (370)
... ++++.|-..-+++... .+-.++ | +. +.. .+....+- -..++...++|.| + .+++.
T Consensus 324 KI~-sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~H--rrsV~sAyFSPs~gt-l~TT~----------- 388 (498)
T KOG4328|consen 324 KIT-SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPH--RRSVNSAYFSPSGGT-LLTTC----------- 388 (498)
T ss_pred ccc-eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccc--cceeeeeEEcCCCCc-eEeec-----------
Confidence 456 7888876654444333 455544 3 21 211 12222221 1467888999865 6 44432
Q ss_pred cccccCCCceEEEEeCC---CC--eEEEEec-----CCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeecc
Q 017520 191 DILEGKPHGQLLKYDPS---SN--ITTLVAD-----GFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAE 259 (370)
Q Consensus 191 ~~~~~~~~g~l~~~d~~---t~--~~~~~~~-----~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~ 259 (370)
.+..|..||.. .+ ....+.. ....|.-.+|+||.+.+++...-+ |-.|+..+.+. ...+.+
T Consensus 389 ------~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~--v~el~~ 460 (498)
T KOG4328|consen 389 ------QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQM--VCELHD 460 (498)
T ss_pred ------cCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEE--eeeccC
Confidence 12345555542 00 0000000 112344568899998788877766 88888655321 222222
Q ss_pred -CCCCCCCceeECCCCCEEEE
Q 017520 260 -NLPGAPDNINLAPDGTFWIA 279 (370)
Q Consensus 260 -~~~g~p~~i~~d~~G~lwv~ 279 (370)
.....|.-+...+-+..|++
T Consensus 461 P~~~tI~~vn~~HP~~~~~~a 481 (498)
T KOG4328|consen 461 PESSTIPSVNEFHPMRDTLAA 481 (498)
T ss_pred ccccccccceeecccccceec
Confidence 22234555556665555555
No 384
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=35.88 E-value=3.3e+02 Score=24.61 Aligned_cols=137 Identities=12% Similarity=0.121 Sum_probs=68.4
Q ss_pred eEEcCCCcEEEEeCCCceEEEc--CCCeEEEEe--ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCC
Q 017520 123 LTSTKEGHLIICDNANGLHKVS--EDGVENFLS--YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 198 (370)
Q Consensus 123 l~~d~~G~L~v~~~~~gi~~~~--~~g~~~~~~--~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 198 (370)
++...+|++...-.+ ..+.+- +|.+..... ..+..+......+++++|+.+..-.. .+
T Consensus 3 ~~~~~~Gk~lAi~qd-~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~-----------------S~ 64 (282)
T PF15492_consen 3 LALSSDGKLLAILQD-QCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAE-----------------ST 64 (282)
T ss_pred eeecCCCcEEEEEec-cEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEc-----------------CC
Confidence 456678887765533 344444 444222211 12333445667899999998766544 24
Q ss_pred ceEEEEeCCCCeEEEEecCCC-------CccceEEccC------CCEEEEEeCCc-EEEEEeCCC---CCCceeeeccCC
Q 017520 199 GQLLKYDPSSNITTLVADGFY-------FANGVALSRD------EDYVVVCESWK-CRKYWLKGE---RKGKLETFAENL 261 (370)
Q Consensus 199 g~l~~~d~~t~~~~~~~~~~~-------~p~gi~~~~d------g~~l~v~~~~~-l~~~~~~~~---~~~~~~~~~~~~ 261 (370)
|.|..||..+.....+..... ...|+.+-.- ...|+|.+..+ +..|-+... +..+-..|. -.
T Consensus 65 G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs-f~ 143 (282)
T PF15492_consen 65 GTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS-FS 143 (282)
T ss_pred CeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE-ec
Confidence 677777776444433322111 1234433211 12466666555 666665321 111112221 12
Q ss_pred CCCCCc---eeECCCCCEEE
Q 017520 262 PGAPDN---INLAPDGTFWI 278 (370)
Q Consensus 262 ~g~p~~---i~~d~~G~lwv 278 (370)
..+|.| ++.+++.++.+
T Consensus 144 ~~yp~Gi~~~vy~p~h~LLl 163 (282)
T PF15492_consen 144 SHYPHGINSAVYHPKHRLLL 163 (282)
T ss_pred ccCCCceeEEEEcCCCCEEE
Confidence 234555 55788877554
No 385
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=35.69 E-value=6e+02 Score=27.49 Aligned_cols=148 Identities=14% Similarity=0.043 Sum_probs=0.0
Q ss_pred cCCCcEEEEe----------cCCeEEEEe--C-CeEEEEEe--cCCCceeceEEcCCCcEEEEeCCC-ceEEEcCCC-eE
Q 017520 87 DKNGVIYTAT----------RDGWIKRLQ--D-GTWVNWKF--IDSQTLVGLTSTKEGHLIICDNAN-GLHKVSEDG-VE 149 (370)
Q Consensus 87 d~~G~l~v~~----------~~g~I~~~~--~-g~~~~~~~--~~~~p~~gl~~d~~G~L~v~~~~~-gi~~~~~~g-~~ 149 (370)
|++-++.||+ ..|+|..+. + ++.+.... ..|.|+ .+..- +|++.++-... .++.+.... ++
T Consensus 785 d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~-aL~~f-ngkllA~In~~vrLye~t~~~eLr 862 (1096)
T KOG1897|consen 785 DPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVY-ALVEF-NGKLLAGINQSVRLYEWTTERELR 862 (1096)
T ss_pred CCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecccee-ehhhh-CCeEEEecCcEEEEEEccccceeh
Q ss_pred EEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEcc
Q 017520 150 NFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 228 (370)
Q Consensus 150 ~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~ 228 (370)
. ..........+.+.-.| .|+++|.- ..-.+..|+.+.+.+..++.+...-.-.+..-
T Consensus 863 ~-----e~~~~~~~~aL~l~v~gdeI~VgDlm----------------~Sitll~y~~~eg~f~evArD~~p~Wmtavei 921 (1096)
T KOG1897|consen 863 I-----ECNISNPIIALDLQVKGDEIAVGDLM----------------RSITLLQYKGDEGNFEEVARDYNPNWMTAVEI 921 (1096)
T ss_pred h-----hhcccCCeEEEEEEecCcEEEEeecc----------------ceEEEEEEeccCCceEEeehhhCccceeeEEE
Q ss_pred -CCCEEEEEeCCc---EEEEEeCCCCCCceeee
Q 017520 229 -DEDYVVVCESWK---CRKYWLKGERKGKLETF 257 (370)
Q Consensus 229 -dg~~l~v~~~~~---l~~~~~~~~~~~~~~~~ 257 (370)
|.+..+.++..+ +.++|-+......+...
T Consensus 922 l~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l 954 (1096)
T KOG1897|consen 922 LDDDTYLGAENSGNLFTVRKDSDATTDEERQIL 954 (1096)
T ss_pred ecCceEEeecccccEEEEEecCCCCchhhhhcc
No 386
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=35.46 E-value=3.5e+02 Score=24.70 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=37.9
Q ss_pred ceEEEEeCCCC-----eEEEEe-cCCCC-ccceEEccCCCEEEEEeCCcEEEEEeCCCC-CCceeeeccCCCCCCCceeE
Q 017520 199 GQLLKYDPSSN-----ITTLVA-DGFYF-ANGVALSRDEDYVVVCESWKCRKYWLKGER-KGKLETFAENLPGAPDNINL 270 (370)
Q Consensus 199 g~l~~~d~~t~-----~~~~~~-~~~~~-p~gi~~~~dg~~l~v~~~~~l~~~~~~~~~-~~~~~~~~~~~~g~p~~i~~ 270 (370)
|+|+.|+.... +++.+. ..... +..++ +-++.++++....|+.|+++..+ ... ..+. ..+.....+..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~--~~~~~lv~~~g~~l~v~~l~~~~~l~~-~~~~-~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAIC--SFNGRLVVAVGNKLYVYDLDNSKTLLK-KAFY-DSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEE--EETTEEEEEETTEEEEEEEETTSSEEE-EEEE--BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhh--hhCCEEEEeecCEEEEEEccCcccchh-hhee-cceEEEEEEec
Confidence 88888877652 344332 12222 23333 32444666665558888877654 211 1122 12212333333
Q ss_pred CCCCCEEEEEecC
Q 017520 271 APDGTFWIAIIKL 283 (370)
Q Consensus 271 d~~G~lwv~~~~~ 283 (370)
-. ..+++++...
T Consensus 138 ~~-~~I~vgD~~~ 149 (321)
T PF03178_consen 138 FK-NYILVGDAMK 149 (321)
T ss_dssp ET-TEEEEEESSS
T ss_pred cc-cEEEEEEccc
Confidence 22 3688887543
No 387
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.01 E-value=6.4e+02 Score=27.66 Aligned_cols=63 Identities=14% Similarity=0.251 Sum_probs=36.1
Q ss_pred CcceEEcC-CCcEEEEecCCeEEEEe--CCeE-EEEEec---CCCceeceEE--cCCCcEEEEeCCCceEEEc
Q 017520 81 PEDASMDK-NGVIYTATRDGWIKRLQ--DGTW-VNWKFI---DSQTLVGLTS--TKEGHLIICDNANGLHKVS 144 (370)
Q Consensus 81 P~~i~~d~-~G~l~v~~~~g~I~~~~--~g~~-~~~~~~---~~~p~~gl~~--d~~G~L~v~~~~~gi~~~~ 144 (370)
|..+.+.+ .-.+++++.+-.|..++ .++. ..|... ..+.. .|.+ +.|..|.++....|+.++.
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs-~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVS-DLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccc-eeeeecccchhheeeeccCceEEEe
Confidence 66676665 55788888777888888 4543 333221 11222 3333 2244555555567888876
No 388
>PLN02153 epithiospecifier protein
Probab=34.73 E-value=3.7e+02 Score=24.80 Aligned_cols=119 Identities=11% Similarity=0.080 Sum_probs=55.6
Q ss_pred CCcEEEEe-c-------CCeEEEEe--CCeEEEEEecCCCcee---c--eEEcCCCcEEEEeCC------CceEEEc-CC
Q 017520 89 NGVIYTAT-R-------DGWIKRLQ--DGTWVNWKFIDSQTLV---G--LTSTKEGHLIICDNA------NGLHKVS-ED 146 (370)
Q Consensus 89 ~G~l~v~~-~-------~g~I~~~~--~g~~~~~~~~~~~p~~---g--l~~d~~G~L~v~~~~------~gi~~~~-~~ 146 (370)
++.||+-- . ...++++| ..++.........|.. + ++. -++.||+.... ..++++| .+
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA-VGTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE-ECCEEEEECCCCCCCccCcEEEEECCC
Confidence 45788632 1 13578888 4555544322211110 2 222 25788886432 2467788 44
Q ss_pred C-eEEEEeec-CCccc-ccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe
Q 017520 147 G-VENFLSYV-NGSKL-RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 215 (370)
Q Consensus 147 g-~~~~~~~~-~g~~~-~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~ 215 (370)
. ++.+.... ...+. ..-+.++ .-+++||+--.....+... .......|.+||+++.+++.+.
T Consensus 111 ~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~------~~~~~~~v~~yd~~~~~W~~l~ 175 (341)
T PLN02153 111 NEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMK------TPERFRTIEAYNIADGKWVQLP 175 (341)
T ss_pred CEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccC------CCcccceEEEEECCCCeEeeCC
Confidence 4 55443210 01111 1112233 3467888874321100000 0001245889999988887654
No 389
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=34.72 E-value=1.9e+02 Score=26.61 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=41.4
Q ss_pred CCcEEEEeCC-CceEEEcCCCeEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEe
Q 017520 128 EGHLIICDNA-NGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD 205 (370)
Q Consensus 128 ~G~L~v~~~~-~gi~~~~~~g~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d 205 (370)
++.|++++-+ .|...+ ++|...+.....-..|+.|.+|..-|.|. -|+.|. ...+..+.++
T Consensus 180 ~~~Lh~aNLGDSGF~Vv-R~G~vv~~S~~Q~H~FN~PyQLs~~p~~~~~~~~d~----------------p~~ad~~~~~ 242 (330)
T KOG1379|consen 180 NGKLHTANLGDSGFLVV-REGKVVFRSPEQQHYFNTPYQLSSPPEGYSSYISDV----------------PDSADVTSFD 242 (330)
T ss_pred CCeEEEeeccCcceEEE-ECCEEEEcCchheeccCCceeeccCCccccccccCC----------------ccccceEEEe
Confidence 7889998766 455444 34422222223345678899999988874 444443 1335566777
Q ss_pred CCCCeEEEEe
Q 017520 206 PSSNITTLVA 215 (370)
Q Consensus 206 ~~t~~~~~~~ 215 (370)
.+.|.+..++
T Consensus 243 v~~GDvIilA 252 (330)
T KOG1379|consen 243 VQKGDVIILA 252 (330)
T ss_pred ccCCCEEEEe
Confidence 6655554444
No 390
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=34.37 E-value=2.3e+02 Score=28.28 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=46.8
Q ss_pred ccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC--CCCccceEEcc-CCCEEEEEe
Q 017520 161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSR-DEDYVVVCE 237 (370)
Q Consensus 161 ~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~p~gi~~~~-dg~~l~v~~ 237 (370)
+-+|.|++..+|.+.++-+ .+-++..||+-..+....... ..+...+-|-| .++.++++.
T Consensus 51 GCVN~LeWn~dG~lL~SGS-----------------DD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sg 113 (758)
T KOG1310|consen 51 GCVNCLEWNADGELLASGS-----------------DDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSG 113 (758)
T ss_pred ceecceeecCCCCEEeecC-----------------CcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEec
Confidence 4789999999999888754 345788898864443333222 22233344444 355688887
Q ss_pred CCc--EEEEEeCC
Q 017520 238 SWK--CRKYWLKG 248 (370)
Q Consensus 238 ~~~--l~~~~~~~ 248 (370)
.+. |..||++.
T Consensus 114 AgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 114 AGDKLIKLFDLDS 126 (758)
T ss_pred cCcceEEEEeccc
Confidence 776 89999874
No 391
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=32.75 E-value=3.4e+02 Score=24.66 Aligned_cols=93 Identities=18% Similarity=0.127 Sum_probs=52.6
Q ss_pred CceEEEcC-CC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe
Q 017520 138 NGLHKVSE-DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 215 (370)
Q Consensus 138 ~gi~~~~~-~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~ 215 (370)
.+|+.++. +. +..+..... ..+++|.+..+.+|+++-.-+ ........+..||.++..+..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~----G~V~~l~~~~~~~Llv~G~ft-----------~~~~~~~~la~yd~~~~~w~~~~ 80 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGIS----GTVTDLQWASNNQLLVGGNFT-----------LNGTNSSNLATYDFKNQTWSSLG 80 (281)
T ss_pred CEEEEEECCCCEeecCCCCce----EEEEEEEEecCCEEEEEEeeE-----------ECCCCceeEEEEecCCCeeeecC
Confidence 46888883 33 444433222 357788887777888874210 00112456889999877776655
Q ss_pred cC----CCCcc-ceE-EccCCCEEEEEeCCc-----EEEEE
Q 017520 216 DG----FYFAN-GVA-LSRDEDYVVVCESWK-----CRKYW 245 (370)
Q Consensus 216 ~~----~~~p~-gi~-~~~dg~~l~v~~~~~-----l~~~~ 245 (370)
.+ +..|. .+. .+.|+..+|++.... |.+||
T Consensus 81 ~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 81 GGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred CcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc
Confidence 42 23332 222 344666677665422 77775
No 392
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=32.61 E-value=28 Score=31.79 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=13.9
Q ss_pred ccchhhhHHHHHHHHHHHHHh
Q 017520 23 VPACYSFGFLLVCLIAFLLQI 43 (370)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ 43 (370)
|+||+.-.+||+|++|+|.|-
T Consensus 1 MaMmMTGRVLLVCALCVLWCg 21 (291)
T PTZ00459 1 MAMMMTGRVLLVCALCVLWCG 21 (291)
T ss_pred CccchhchHHHHHHHHHHhcC
Confidence 467665446677777777664
No 393
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=31.25 E-value=2.3e+02 Score=28.64 Aligned_cols=67 Identities=13% Similarity=0.157 Sum_probs=46.0
Q ss_pred ecCCCCccceEEccCCCEEEEEeCC-c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520 215 ADGFYFANGVALSRDEDYVVVCESW-K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 281 (370)
Q Consensus 215 ~~~~~~p~gi~~~~dg~~l~v~~~~-~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~ 281 (370)
..++--|.-||+++....+-|+... + |.+|.+......+...+.-.....|.||++-.|.-+.+-..
T Consensus 335 IPGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVG 403 (671)
T PF15390_consen 335 IPGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVG 403 (671)
T ss_pred cccccccceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEec
Confidence 4567788999999999877777544 4 88888765444444444223344799999988886555543
No 394
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=31.09 E-value=4.9e+02 Score=25.14 Aligned_cols=125 Identities=11% Similarity=0.057 Sum_probs=66.0
Q ss_pred cEEEEecCCeEEEEe--CCeEEEEEe-cCCCceeceEEcCCC-cEEEE-eCCCceEEEc-CC----CeEEEEeecCCccc
Q 017520 91 VIYTATRDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEG-HLIIC-DNANGLHKVS-ED----GVENFLSYVNGSKL 160 (370)
Q Consensus 91 ~l~v~~~~g~I~~~~--~g~~~~~~~-~~~~p~~gl~~d~~G-~L~v~-~~~~gi~~~~-~~----g~~~~~~~~~g~~~ 160 (370)
-|.-|+.+..|..|+ .|+...... ..+... .+.+.+.. ...+. .+.+.+..+| ++ +...-+ .
T Consensus 258 VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq-~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~---~---- 329 (463)
T KOG0270|consen 258 VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQ-TLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF---D---- 329 (463)
T ss_pred eEEecCCCceEEEEEcCCCCcceehhhcCCcee-EEEecCCCceEEEeccccceEEeeeccCccccCceEEe---c----
Confidence 344556888999999 676554433 455556 78887644 44443 3334455555 31 111111 1
Q ss_pred ccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCC--eEEEEecCCCCccceEEccCCCEEEEEe
Q 017520 161 RFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--ITTLVADGFYFANGVALSRDEDYVVVCE 237 (370)
Q Consensus 161 ~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~--~~~~~~~~~~~p~gi~~~~dg~~l~v~~ 237 (370)
..+..+++++... .++... .+|.|+.+|.... .+..+...-....|++++...-.+.++.
T Consensus 330 g~VEkv~w~~~se~~f~~~t-----------------ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~ 392 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVST-----------------DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTA 392 (463)
T ss_pred cceEEEEecCCCceeEEEec-----------------CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeec
Confidence 2345567766543 222211 4577888876432 1222211223567888888766677765
Q ss_pred CCc
Q 017520 238 SWK 240 (370)
Q Consensus 238 ~~~ 240 (370)
...
T Consensus 393 s~d 395 (463)
T KOG0270|consen 393 STD 395 (463)
T ss_pred ccc
Confidence 544
No 395
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=31.07 E-value=91 Score=29.12 Aligned_cols=52 Identities=17% Similarity=0.088 Sum_probs=27.8
Q ss_pred CceEEEEeCCC-CeEEEEec------CCCCccceEEccCC--CEEEEEeCCc-EEEEEeCCC
Q 017520 198 HGQLLKYDPSS-NITTLVAD------GFYFANGVALSRDE--DYVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 198 ~g~l~~~d~~t-~~~~~~~~------~~~~p~gi~~~~dg--~~l~v~~~~~-l~~~~~~~~ 249 (370)
...||.+|.++ +....... ++..|..+..+.|| +.+|..+..+ |||+|+.+.
T Consensus 180 ~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl~GnlwR~dl~~~ 241 (335)
T PF05567_consen 180 GAALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDLGGNLWRFDLSSA 241 (335)
T ss_dssp -EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEETTSEEEEEE--TT
T ss_pred CcEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcCCCcEEEEECCCC
Confidence 45788888887 65432221 12222222233444 4799999988 999999754
No 396
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=30.49 E-value=1e+02 Score=18.88 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=16.7
Q ss_pred ceEEcCCCcEEEEeCCCceEEEc
Q 017520 122 GLTSTKEGHLIICDNANGLHKVS 144 (370)
Q Consensus 122 gl~~d~~G~L~v~~~~~gi~~~~ 144 (370)
++++. .+.+||++...|+..+|
T Consensus 6 ~v~v~-g~yaYva~~~~Gl~IvD 27 (42)
T PF08309_consen 6 DVAVS-GNYAYVADGNNGLVIVD 27 (42)
T ss_pred EEEEE-CCEEEEEeCCCCEEEEE
Confidence 56664 45789998778888888
No 397
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=30.03 E-value=1.5e+02 Score=18.71 Aligned_cols=27 Identities=11% Similarity=0.036 Sum_probs=20.2
Q ss_pred cceEEccCCCEEEEEeCCc-EEEEEeCC
Q 017520 222 NGVALSRDEDYVVVCESWK-CRKYWLKG 248 (370)
Q Consensus 222 ~gi~~~~dg~~l~v~~~~~-l~~~~~~~ 248 (370)
.-++++|..+.+.++...+ |..|.+++
T Consensus 15 ~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 15 SCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred EEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 4678899999777777777 77777654
No 398
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=28.98 E-value=6e+02 Score=25.44 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=16.6
Q ss_pred ccceEEccCCCEEEEEeCCc--EEEEEe
Q 017520 221 ANGVALSRDEDYVVVCESWK--CRKYWL 246 (370)
Q Consensus 221 p~gi~~~~dg~~l~v~~~~~--l~~~~~ 246 (370)
...+++++||..+-++...+ ++.|-+
T Consensus 259 ifnlsWS~DGTQ~a~gt~~G~v~~A~~i 286 (737)
T KOG1524|consen 259 IFNLSWSADGTQATCGTSTGQLIVAYAI 286 (737)
T ss_pred eEEEEEcCCCceeeccccCceEEEeeee
Confidence 34578888888776666655 444433
No 399
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=28.91 E-value=4.5e+02 Score=26.35 Aligned_cols=61 Identities=23% Similarity=0.194 Sum_probs=38.5
Q ss_pred CCccceEEccCCCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520 219 YFANGVALSRDEDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 282 (370)
Q Consensus 219 ~~p~gi~~~~dg~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~ 282 (370)
.+.|.+.++|.|+++.++...+ +.-||.+-. ......-.......++.-|+.|++.+++..
T Consensus 493 ~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a---~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA---DLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred cccceEEEcCCCcEEEEEEecccccceEEEecchh---hhhhccCccccccccceECCCCCEEEEeee
Confidence 5678999999999988887542 788886521 111110000112456888999988877654
No 400
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=28.63 E-value=1.1e+02 Score=17.72 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=11.6
Q ss_pred cceEEccCCCEEEEEeC
Q 017520 222 NGVALSRDEDYVVVCES 238 (370)
Q Consensus 222 ~gi~~~~dg~~l~v~~~ 238 (370)
...++++||+.++++..
T Consensus 12 ~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp EEEEE-TTSSEEEEEEE
T ss_pred cCEEEecCCCEEEEEec
Confidence 45688999988777653
No 401
>PLN02153 epithiospecifier protein
Probab=28.63 E-value=4.7e+02 Score=24.11 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=13.4
Q ss_pred ceEEEEeCCCCeEEEEe
Q 017520 199 GQLLKYDPSSNITTLVA 215 (370)
Q Consensus 199 g~l~~~d~~t~~~~~~~ 215 (370)
..+++||+.+.+++.+.
T Consensus 101 ~~v~~yd~~t~~W~~~~ 117 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLT 117 (341)
T ss_pred CcEEEEECCCCEEEEec
Confidence 46899999988887653
No 402
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.75 E-value=5.5e+02 Score=28.63 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=21.3
Q ss_pred cceEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520 222 NGVALSRDEDYVVVCESWK-CRKYWLKGE 249 (370)
Q Consensus 222 ~gi~~~~dg~~l~v~~~~~-l~~~~~~~~ 249 (370)
.-+++|...+.+|+-...+ |..|++.+.
T Consensus 246 ~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 246 RQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eeeEeccccceeeeeccCceEEEEEccCC
Confidence 3477888778788887777 888988653
No 403
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=27.31 E-value=93 Score=17.81 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=17.6
Q ss_pred CCcceEEcCCCcEEEEecCCeEEEE
Q 017520 80 HPEDASMDKNGVIYTATRDGWIKRL 104 (370)
Q Consensus 80 ~P~~i~~d~~G~l~v~~~~g~I~~~ 104 (370)
....|.+.+++.+|.-+.+|.|++.
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 4556667666778877777878764
No 404
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=27.16 E-value=6.3e+02 Score=25.25 Aligned_cols=189 Identities=12% Similarity=0.035 Sum_probs=0.0
Q ss_pred ceEEcCCC-cEEEEecCCeEEEE-----------e--CCeEEEEEecCCCceeceEEcCCC-cEEEEeCCCceEEEcCCC
Q 017520 83 DASMDKNG-VIYTATRDGWIKRL-----------Q--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNANGLHKVSEDG 147 (370)
Q Consensus 83 ~i~~d~~G-~l~v~~~~g~I~~~-----------~--~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~~~~~gi~~~~~~g 147 (370)
++++-++| .+|.|..||.|..| . .--...+....+..+ +++.+..- +|..++.++-++-+.+.+
T Consensus 349 ~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw-~l~~s~~~~~Llscs~DgTvr~w~~~~ 427 (577)
T KOG0642|consen 349 CVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVW-LLALSSTKDRLLSCSSDGTVRLWEPTE 427 (577)
T ss_pred EEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceecccccee-eeeecccccceeeecCCceEEeeccCC
Q ss_pred -eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-----
Q 017520 148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA----- 221 (370)
Q Consensus 148 -~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p----- 221 (370)
................-++.-..--..+.+-.. +.--.++.++.+...++.....|
T Consensus 428 ~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~------------------~~~~~~~~ev~s~~~~~~s~~~~~~~~~ 489 (577)
T KOG0642|consen 428 ESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRF------------------GYTSIDDMEVVSDLLIFESSASPGPRRY 489 (577)
T ss_pred cCccccCCccccCCcceEeeccchhHhhhhhccc------------------ccccchhhhhhhheeeccccCCCccccc
Q ss_pred ---cceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC-CEEEEEecCchhHHHhhhc
Q 017520 222 ---NGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNS 293 (370)
Q Consensus 222 ---~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~~~~~~~~~~~ 293 (370)
|-+...+.+...|.+...+ |..|| .+.+..---......--+++++|++| .+-.+...++..++....+
T Consensus 490 ~~in~vVs~~~~~~~~~~hed~~Ir~~d---n~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 490 PQINKVVSHPTADITFTAHEDRSIRFFD---NKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred CccceEEecCCCCeeEecccCCceeccc---ccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
No 405
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=26.73 E-value=1.3e+02 Score=26.95 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=31.5
Q ss_pred CCcceEEcCCCcEEEEe-cCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEe
Q 017520 80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICD 135 (370)
Q Consensus 80 ~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~ 135 (370)
|-..+.+-+||.|..+. +||+|..|+ +.. ..+........+ .++|.++-+|..+.
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn-~vAfspd~~lmAaa 311 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVN-AVAFSPDCELMAAA 311 (323)
T ss_pred CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhccee-EEEeCCCCchhhhc
Confidence 34456666777777554 777777776 443 222222334456 77887775555543
No 406
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=25.85 E-value=5.3e+02 Score=23.76 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.0
Q ss_pred ceEEEEeCCCCeEEEEe
Q 017520 199 GQLLKYDPSSNITTLVA 215 (370)
Q Consensus 199 g~l~~~d~~t~~~~~~~ 215 (370)
..+.+||+.+++++.+.
T Consensus 168 ~~v~~YDp~t~~W~~~~ 184 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLG 184 (346)
T ss_pred ceEEEEECCCCceeECc
Confidence 57999999998887654
No 407
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=25.72 E-value=6.2e+02 Score=24.51 Aligned_cols=137 Identities=11% Similarity=0.054 Sum_probs=66.7
Q ss_pred CcEEEEe---cCCeEEEEe--CCeEEEEEecCCC----ceeceEEcCCCcEEEEeCC------------CceEEEc-CCC
Q 017520 90 GVIYTAT---RDGWIKRLQ--DGTWVNWKFIDSQ----TLVGLTSTKEGHLIICDNA------------NGLHKVS-EDG 147 (370)
Q Consensus 90 G~l~v~~---~~g~I~~~~--~g~~~~~~~~~~~----p~~gl~~d~~G~L~v~~~~------------~gi~~~~-~~g 147 (370)
|.+|-|. --+.+|+++ +.+++.+..+..- .+ .+++-+.|.||+-... .-++.++ .+.
T Consensus 86 GEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRssh-q~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~tr 164 (521)
T KOG1230|consen 86 GEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSH-QAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTR 164 (521)
T ss_pred ceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccc-eeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccc
Confidence 5555544 335688888 5677776544331 23 3445567888885321 1244444 333
Q ss_pred -eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc---cc
Q 017520 148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA---NG 223 (370)
Q Consensus 148 -~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p---~g 223 (370)
++.+... .+..-.+-+.|+.-..--|.|+-.. +-..+. .--+-||.+|.+|-++..+......| .|
T Consensus 165 kweql~~~-g~PS~RSGHRMvawK~~lilFGGFh------d~nr~y---~YyNDvy~FdLdtykW~Klepsga~PtpRSG 234 (521)
T KOG1230|consen 165 KWEQLEFG-GGPSPRSGHRMVAWKRQLILFGGFH------DSNRDY---IYYNDVYAFDLDTYKWSKLEPSGAGPTPRSG 234 (521)
T ss_pred hheeeccC-CCCCCCccceeEEeeeeEEEEccee------cCCCce---EEeeeeEEEeccceeeeeccCCCCCCCCCCc
Confidence 4444221 1111123344555444444454210 000000 01235889999887777665433233 23
Q ss_pred --eEEccCCCEEEEEe
Q 017520 224 --VALSRDEDYVVVCE 237 (370)
Q Consensus 224 --i~~~~dg~~l~v~~ 237 (370)
+.+.|+|..+++..
T Consensus 235 cq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 235 CQFSVTPQGGIVVYGG 250 (521)
T ss_pred ceEEecCCCcEEEEcc
Confidence 45567887544443
No 408
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=25.70 E-value=5.2e+02 Score=23.59 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=26.1
Q ss_pred ceEEEEeCCCCeEE---EEecCCCCc--cceEEccCCCEEEEEeCC------c-EEEEEeCCC
Q 017520 199 GQLLKYDPSSNITT---LVADGFYFA--NGVALSRDEDYVVVCESW------K-CRKYWLKGE 249 (370)
Q Consensus 199 g~l~~~d~~t~~~~---~~~~~~~~p--~gi~~~~dg~~l~v~~~~------~-l~~~~~~~~ 249 (370)
..+++||+++.+.+ .....+..+ +..+..-+++ +|+..-. . +++||+...
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~-iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENGSACYKDGT-LYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCE-EEEEeCcCCCccCceEEEEcCCCC
Confidence 46889998776642 112233322 1122223444 7776431 2 899997643
No 409
>PTZ00486 apyrase Superfamily; Provisional
Probab=24.84 E-value=3.9e+02 Score=25.06 Aligned_cols=43 Identities=21% Similarity=0.148 Sum_probs=24.5
Q ss_pred eEEEEECCCCc-E--EEEEeCCCCCccccc--eeEEEECCEEEEEeCC
Q 017520 318 AHLIHVAEDGT-I--IRNLVDPTGQLMSFV--TSGLQVDNHLYVISLT 360 (370)
Q Consensus 318 g~v~~~~~~g~-~--~~~~~~~~g~~~~~~--t~~~~~~g~L~~gs~~ 360 (370)
|.|++++.+++ . ...+.+-+|...... -=++..+++||+||..
T Consensus 135 GiVy~i~~~~~~~~PwvIL~dGdG~~~kGfK~EWaTVKd~~LyVGs~G 182 (352)
T PTZ00486 135 GIVYEIDIDKKKAYPRHILSDGNGNSDKGMKIEWATVYDDKLYVGSIG 182 (352)
T ss_pred eEEEEEEcCCCcEeeEEEEecCCCCCCCCcceeeEEEECCEEEEeccc
Confidence 67888864443 2 224556555322222 1233478899999987
No 410
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=24.73 E-value=6.2e+02 Score=27.18 Aligned_cols=57 Identities=19% Similarity=0.125 Sum_probs=32.1
Q ss_pred ceEEEEeCCCCeEEEE-ecCCCCccceEEccCCCEEEE-E--eC--Cc--EEEEEeCCCCCCcee
Q 017520 199 GQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVV-C--ES--WK--CRKYWLKGERKGKLE 255 (370)
Q Consensus 199 g~l~~~d~~t~~~~~~-~~~~~~p~gi~~~~dg~~l~v-~--~~--~~--l~~~~~~~~~~~~~~ 255 (370)
++|...|-++...+++ ...-.-...-.++|||+.+-. + +. ++ |++-++.....+..+
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vk 393 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVK 393 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceE
Confidence 4677777665555544 322222233578899988766 2 22 23 888888765444343
No 411
>PHA03164 hypothetical protein; Provisional
Probab=24.72 E-value=52 Score=23.01 Aligned_cols=8 Identities=13% Similarity=0.227 Sum_probs=3.1
Q ss_pred cCcccccc
Q 017520 14 KGRTSSKL 21 (370)
Q Consensus 14 ~~~~~~~~ 21 (370)
++||....
T Consensus 53 nrRktftF 60 (88)
T PHA03164 53 NRRKTFTF 60 (88)
T ss_pred hhhheeeh
Confidence 33333333
No 412
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=24.52 E-value=9.1e+02 Score=26.06 Aligned_cols=68 Identities=15% Similarity=0.250 Sum_probs=39.9
Q ss_pred eEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE-EecCCCCccceEEccCCCEEEEEeCCc-EEE
Q 017520 166 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWK-CRK 243 (370)
Q Consensus 166 l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~-~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~ 243 (370)
+..+....+|+...+ ..+.|+.+++....... +...-..+..+.++.||+.+......+ +..
T Consensus 138 ~~g~s~~~~~i~~gs----------------v~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRl 201 (967)
T KOG0974|consen 138 IIGDSAEELYIASGS----------------VFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRL 201 (967)
T ss_pred EEeccCcEEEEEecc----------------ccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceee
Confidence 444555578887654 34677777765222222 222223455667778998777666667 777
Q ss_pred EEeCCC
Q 017520 244 YWLKGE 249 (370)
Q Consensus 244 ~~~~~~ 249 (370)
+.+++.
T Consensus 202 W~i~s~ 207 (967)
T KOG0974|consen 202 WPIDSR 207 (967)
T ss_pred eecccc
Confidence 776654
No 413
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=24.18 E-value=5.1e+02 Score=23.02 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=12.9
Q ss_pred CCcEEEEeCC-CceEEEc-CCC
Q 017520 128 EGHLIICDNA-NGLHKVS-EDG 147 (370)
Q Consensus 128 ~G~L~v~~~~-~gi~~~~-~~g 147 (370)
+|.+|.--.+ ..|.+++ +++
T Consensus 77 nGs~yynk~~t~~ivky~l~~~ 98 (249)
T KOG3545|consen 77 NGSLYYNKAGTRNIIKYDLETR 98 (249)
T ss_pred cceEEeeccCCcceEEEEeecc
Confidence 5677765443 4688888 555
No 414
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=23.87 E-value=1.3e+02 Score=29.13 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=19.3
Q ss_pred cccccccceEEcCCCcEEEEeCC
Q 017520 158 SKLRFANDVVEASDGSLYFTVSS 180 (370)
Q Consensus 158 ~~~~~~~~l~~d~~G~l~v~d~~ 180 (370)
..|..+..|.+|.||..|++|..
T Consensus 464 ~~fylphgl~~dkdgf~~~tdva 486 (501)
T KOG3567|consen 464 NLFYLPHGLSIDKDGFYWVTDVA 486 (501)
T ss_pred CceecCCcceecCCCcEEeeccc
Confidence 34677889999999999999863
No 415
>PLN03160 uncharacterized protein; Provisional
Probab=23.51 E-value=48 Score=28.86 Aligned_cols=12 Identities=8% Similarity=-0.072 Sum_probs=5.1
Q ss_pred Ccccccccccch
Q 017520 15 GRTSSKLFVPAC 26 (370)
Q Consensus 15 ~~~~~~~~~~~~ 26 (370)
+||.+.+|...+
T Consensus 32 ~r~~~~~c~~~~ 43 (219)
T PLN03160 32 RRRNCIKCCGCI 43 (219)
T ss_pred ccccceEEHHHH
Confidence 344444443333
No 416
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.42 E-value=6.6e+02 Score=24.06 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=13.1
Q ss_pred ccceEEccCCCEEEEEe
Q 017520 221 ANGVALSRDEDYVVVCE 237 (370)
Q Consensus 221 p~gi~~~~dg~~l~v~~ 237 (370)
-.|+++++|+..+|..-
T Consensus 202 fEglait~d~~~L~~~l 218 (391)
T COG4222 202 FEGLAITPDGKKLYALL 218 (391)
T ss_pred eeeEEecCCCceEEEEE
Confidence 35788999998887754
No 417
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.34 E-value=9.2e+02 Score=25.68 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=31.8
Q ss_pred CCceEEEEeCC----CCeEEEEec-CCCCccceEEccCCCE-EEEEeCCcEEEEEeCCC
Q 017520 197 PHGQLLKYDPS----SNITTLVAD-GFYFANGVALSRDEDY-VVVCESWKCRKYWLKGE 249 (370)
Q Consensus 197 ~~g~l~~~d~~----t~~~~~~~~-~~~~p~gi~~~~dg~~-l~v~~~~~l~~~~~~~~ 249 (370)
.+|.|++|..+ -+....+.. +-....|+++-.|+.. ++++.+.+|..|.+++.
T Consensus 145 ~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 145 TNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR 203 (933)
T ss_pred cCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC
Confidence 45777777532 111112222 2334579999989887 56666666888887753
No 418
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=22.95 E-value=1.7e+02 Score=27.32 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=25.7
Q ss_pred ceEEEc-CC-C--eEEEEeecCCcccccccceEEcCCC---cEEEEeCCCCCCCccceecccccCCCceEEEEeCCC
Q 017520 139 GLHKVS-ED-G--VENFLSYVNGSKLRFANDVVEASDG---SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS 208 (370)
Q Consensus 139 gi~~~~-~~-g--~~~~~~~~~g~~~~~~~~l~~d~~G---~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t 208 (370)
.|+.++ ++ | +..+........+..+.-+..+.|| .+|++|. .|.|||+|..+
T Consensus 182 ~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl------------------~GnlwR~dl~~ 240 (335)
T PF05567_consen 182 ALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDL------------------GGNLWRFDLSS 240 (335)
T ss_dssp EEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEET------------------TSEEEEEE--T
T ss_pred EEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcC------------------CCcEEEEECCC
Confidence 477788 66 7 4433221111112233223335566 4888875 38999999753
No 419
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=21.89 E-value=1e+03 Score=25.79 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=39.5
Q ss_pred CCcEEEEecCCeEEEE----e--CCeEEEEEecCCCceeceEEcCCCcEEEE-eCCCceEEEcCC
Q 017520 89 NGVIYTATRDGWIKRL----Q--DGTWVNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVSED 146 (370)
Q Consensus 89 ~G~l~v~~~~g~I~~~----~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~-~~~~gi~~~~~~ 146 (370)
...++++..+|.|..+ + +..++.......... +++.+||+.+.+. +..+.++.++.+
T Consensus 87 ~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~-a~~WSPD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 87 SESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGIL-AASWSPDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred CCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEE-EEEECCCcCEEEEEeCCCEEEEEecc
Confidence 4568888899999999 4 345565555555567 8999999986554 434567777643
No 420
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=21.63 E-value=8.3e+02 Score=24.55 Aligned_cols=174 Identities=11% Similarity=0.115 Sum_probs=89.1
Q ss_pred CCcEEEEecCCeEEEEe--CCeEE-E-EEecCCCceeceEEcCCCcEEE-EeCCCceEEEc-CCC--eEEEEeecCCccc
Q 017520 89 NGVIYTATRDGWIKRLQ--DGTWV-N-WKFIDSQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG--VENFLSYVNGSKL 160 (370)
Q Consensus 89 ~G~l~v~~~~g~I~~~~--~g~~~-~-~~~~~~~p~~gl~~d~~G~L~v-~~~~~gi~~~~-~~g--~~~~~~~~~g~~~ 160 (370)
+|++..++.+..|..++ ++... . +....+... ++++..-+.+++ +..+..+...+ .+| ...+. |
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~-~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~----g--- 289 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVW-GLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ----G--- 289 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCce-eEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec----C---
Confidence 67788888888887888 55432 2 344556677 888875445555 45455566666 666 44442 1
Q ss_pred ccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC-CCccceEEccCCCEEEEEeCC
Q 017520 161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDYVVVCESW 239 (370)
Q Consensus 161 ~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-~~p~gi~~~~dg~~l~v~~~~ 239 (370)
..+.+.....+..++...+ .+..|..++..++....+..+. ...+.+.++ +..++.+...
T Consensus 290 -h~stv~~~~~~~~~~~sgs----------------~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d 350 (537)
T KOG0274|consen 290 -HTSSVRCLTIDPFLLVSGS----------------RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYD 350 (537)
T ss_pred -CCceEEEEEccCceEeecc----------------CCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecC
Confidence 1222222222222222222 3456778887767665555431 122344444 6645555555
Q ss_pred c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhh
Q 017520 240 K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILN 292 (370)
Q Consensus 240 ~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~ 292 (370)
+ |.+|++...+. ...+ ....+....+.++....++-|.......++|+-.
T Consensus 351 ~~v~VW~~~~~~c--l~sl-~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~ 401 (537)
T KOG0274|consen 351 GTVKVWDPRTGKC--LKSL-SGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRT 401 (537)
T ss_pred ceEEEEEhhhcee--eeee-cCCcceEEEEEecCcceEEeeeeccceEeecCCc
Confidence 5 77777642210 1111 1122222335556544566666665455555433
No 421
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown. It is found associated with prokaryotic bifunctional transcriptional repressors [] and eukaryotic enzymes involved in biotin utilization [, ]. In Escherichia coli the biotin operon repressor (BirA) is a bifunctional protein. BirA acts both as the acetyl-coA carboxylase biotin holoenzyme synthetase (6.3.4.15 from EC) and as the biotin operon repressor. DNA sequence analysis of mutations indicates that the helix-turn-helix DNA binding region is located at the N terminus while mutations affecting enzyme function, although mapping over a large region, are found mainly in the central part of the protein's primary sequence [].; GO: 0006464 protein modification process; PDB: 3RUX_A 2CGH_A 3L1A_B 3L2Z_A 1HXD_A 1BIB_A 2EWN_B 1BIA_A 2EJ9_A 3FJP_A ....
Probab=21.52 E-value=1.6e+02 Score=18.49 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=17.2
Q ss_pred EcCCCcEEEEecCCeEEEEeCCeE
Q 017520 86 MDKNGVIYTATRDGWIKRLQDGTW 109 (370)
Q Consensus 86 ~d~~G~l~v~~~~g~I~~~~~g~~ 109 (370)
+|++|.|.+-+.+|.+..+..|.+
T Consensus 22 Id~~G~L~v~~~~g~~~~i~sGdv 45 (48)
T PF02237_consen 22 IDDDGALLVRTEDGSIRTISSGDV 45 (48)
T ss_dssp EETTSEEEEEETTEEEEEESSSEE
T ss_pred ECCCCEEEEEECCCCEEEEEEEEE
Confidence 457888888887776777665543
No 422
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=20.69 E-value=3e+02 Score=28.29 Aligned_cols=26 Identities=19% Similarity=0.320 Sum_probs=20.9
Q ss_pred CCcceEEcCCC-cEEEEecCCeEEEEe
Q 017520 80 HPEDASMDKNG-VIYTATRDGWIKRLQ 105 (370)
Q Consensus 80 ~P~~i~~d~~G-~l~v~~~~g~I~~~~ 105 (370)
.-.+++.+++| .+|.|+..|+|....
T Consensus 126 rVTal~Ws~~~~k~ysGD~~Gkv~~~~ 152 (726)
T KOG3621|consen 126 RVTALEWSKNGMKLYSGDSQGKVVLTE 152 (726)
T ss_pred eEEEEEecccccEEeecCCCceEEEEE
Confidence 34567788888 799999999888776
No 423
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=20.61 E-value=6.4e+02 Score=22.86 Aligned_cols=51 Identities=16% Similarity=0.088 Sum_probs=23.5
Q ss_pred eEEEEECCCCcEEEEEeCCC-CCccccceeEEE---ECCEEEEEeC---CCCeEEEEe
Q 017520 318 AHLIHVAEDGTIIRNLVDPT-GQLMSFVTSGLQ---VDNHLYVISL---TSNFIGKVQ 368 (370)
Q Consensus 318 g~v~~~~~~g~~~~~~~~~~-g~~~~~~t~~~~---~~g~L~~gs~---~~~~i~~~~ 368 (370)
..+..||.+.+....+.... ......++.+.. +..++|+++. ...||.+++
T Consensus 64 ~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 64 SNLATYDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred eeEEEEecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc
Confidence 34566666666665554421 112223333332 2245665543 344555543
No 424
>PF14977 FAM194: FAM194 protein
Probab=20.54 E-value=5.6e+02 Score=22.12 Aligned_cols=18 Identities=17% Similarity=0.580 Sum_probs=13.0
Q ss_pred CceeECCCCCEEEEEecC
Q 017520 266 DNINLAPDGTFWIAIIKL 283 (370)
Q Consensus 266 ~~i~~d~~G~lwv~~~~~ 283 (370)
.+.+.+++|++|+.....
T Consensus 69 ~g~~y~~~g~~~l~l~~~ 86 (208)
T PF14977_consen 69 HGTCYHPNGNIWLVLNQE 86 (208)
T ss_pred CEEEEcCCCCEEEEEECC
Confidence 467778888888887653
Done!