Query 017521
Match_columns 370
No_of_seqs 364 out of 2528
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 09:19:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 100.0 2.1E-46 4.6E-51 362.5 16.3 219 3-225 80-299 (348)
2 cd02129 PA_hSPPL_like PA_hSPPL 99.7 6.3E-17 1.4E-21 136.5 6.4 72 1-72 43-114 (120)
3 COG5540 RING-finger-containing 99.7 2.2E-17 4.7E-22 155.5 2.5 52 154-205 322-373 (374)
4 cd02127 PA_hPAP21_like PA_hPAP 99.6 2.9E-16 6.4E-21 132.5 6.8 74 1-74 33-110 (118)
5 cd04813 PA_1 PA_1: Protease-as 99.6 3.6E-16 7.7E-21 131.8 7.0 72 1-72 38-111 (117)
6 cd02123 PA_C_RZF_like PA_C-RZF 99.6 1.2E-15 2.5E-20 134.6 7.6 74 1-75 66-142 (153)
7 cd02125 PA_VSR PA_VSR: Proteas 99.6 7.7E-16 1.7E-20 131.6 6.1 70 2-72 42-119 (127)
8 cd02126 PA_EDEM3_like PA_EDEM3 99.6 9.7E-16 2.1E-20 130.8 6.7 72 1-72 39-118 (126)
9 cd02122 PA_GRAIL_like PA _GRAI 99.6 2.2E-15 4.9E-20 130.5 6.4 71 1-72 59-130 (138)
10 cd04817 PA_VapT_like PA_VapT_l 99.6 4.4E-15 9.6E-20 128.5 6.6 72 1-72 55-133 (139)
11 cd02132 PA_GO-like PA_GO-like: 99.5 6.7E-15 1.4E-19 127.7 6.2 71 1-73 58-132 (139)
12 cd02130 PA_ScAPY_like PA_ScAPY 99.5 2.4E-14 5.3E-19 121.3 6.4 72 1-72 43-114 (122)
13 PF13639 zf-RING_2: Ring finge 99.5 7.7E-15 1.7E-19 102.3 2.6 44 156-200 1-44 (44)
14 PF02225 PA: PA domain; Inter 99.5 5.3E-14 1.1E-18 114.2 5.2 69 1-69 32-100 (101)
15 cd04816 PA_SaNapH_like PA_SaNa 99.5 1E-13 2.2E-18 117.5 6.4 73 1-73 42-115 (122)
16 COG5243 HRD1 HRD ubiquitin lig 99.4 9.4E-13 2E-17 127.3 10.2 74 133-210 268-352 (491)
17 cd04818 PA_subtilisin_1 PA_sub 99.4 8.2E-13 1.8E-17 111.1 6.7 77 1-77 39-116 (118)
18 cd02124 PA_PoS1_like PA_PoS1_l 99.3 2.8E-12 6.2E-17 109.9 5.9 68 1-72 54-121 (129)
19 PF12678 zf-rbx1: RING-H2 zinc 99.3 6.5E-12 1.4E-16 97.2 5.3 45 155-200 19-73 (73)
20 KOG2442 Uncharacterized conser 99.2 1.6E-11 3.5E-16 122.7 7.6 106 1-109 94-203 (541)
21 cd00538 PA PA: Protease-associ 99.2 1.4E-11 3E-16 103.6 6.1 72 1-72 45-118 (126)
22 cd02133 PA_C5a_like PA_C5a_lik 99.2 1.8E-11 3.8E-16 106.6 6.0 69 1-72 46-114 (143)
23 PHA02929 N1R/p28-like protein; 99.2 1.4E-11 3.1E-16 115.3 4.0 73 131-204 149-227 (238)
24 cd04819 PA_2 PA_2: Protease-as 99.0 2.7E-10 6E-15 97.3 6.0 73 1-73 43-120 (127)
25 PLN03208 E3 ubiquitin-protein 99.0 5.4E-10 1.2E-14 101.0 5.5 54 154-210 17-85 (193)
26 cd00162 RING RING-finger (Real 99.0 5E-10 1.1E-14 76.6 3.7 45 157-203 1-45 (45)
27 KOG0823 Predicted E3 ubiquitin 98.9 6.3E-10 1.4E-14 102.4 3.1 54 153-209 45-100 (230)
28 KOG0802 E3 ubiquitin ligase [P 98.9 6.2E-09 1.3E-13 109.2 9.4 53 154-207 290-344 (543)
29 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.8E-09 4E-14 73.2 3.3 39 158-199 1-39 (39)
30 KOG0317 Predicted E3 ubiquitin 98.9 1.6E-09 3.5E-14 102.4 4.0 49 155-207 239-287 (293)
31 PF13920 zf-C3HC4_3: Zinc fing 98.9 1.9E-09 4E-14 77.1 3.2 47 155-205 2-49 (50)
32 cd04815 PA_M28_2 PA_M28_2: Pro 98.8 3.2E-09 7E-14 91.6 4.4 73 1-73 38-127 (134)
33 KOG0320 Predicted E3 ubiquitin 98.8 2.2E-09 4.7E-14 95.0 2.7 52 154-207 130-181 (187)
34 cd02120 PA_subtilisin_like PA_ 98.8 5.6E-09 1.2E-13 88.3 5.0 69 1-73 50-119 (126)
35 PF12861 zf-Apc11: Anaphase-pr 98.8 3.7E-09 8.1E-14 83.3 3.1 50 155-204 21-82 (85)
36 KOG3920 Uncharacterized conser 98.8 3.7E-09 8E-14 91.7 3.3 70 2-71 87-162 (193)
37 PF14634 zf-RING_5: zinc-RING 98.7 9.9E-09 2.2E-13 71.5 3.2 44 157-201 1-44 (44)
38 smart00184 RING Ring finger. E 98.7 1.5E-08 3.3E-13 66.7 3.3 39 158-199 1-39 (39)
39 PF00097 zf-C3HC4: Zinc finger 98.7 1.1E-08 2.4E-13 69.8 2.5 40 158-199 1-41 (41)
40 PHA02926 zinc finger-like prot 98.7 1.6E-08 3.4E-13 92.7 3.5 52 154-205 169-231 (242)
41 PF15227 zf-C3HC4_4: zinc fing 98.6 2E-08 4.4E-13 69.3 3.0 39 158-199 1-42 (42)
42 cd02128 PA_TfR PA_TfR: Proteas 98.6 2.6E-08 5.6E-13 90.0 4.2 36 1-36 54-89 (183)
43 KOG0828 Predicted E3 ubiquitin 98.5 1.2E-07 2.5E-12 95.3 5.1 51 155-205 571-635 (636)
44 smart00504 Ubox Modified RING 98.5 1.3E-07 2.8E-12 70.3 4.1 46 156-205 2-47 (63)
45 KOG1493 Anaphase-promoting com 98.4 5.5E-08 1.2E-12 74.4 0.6 50 154-203 19-80 (84)
46 COG5194 APC11 Component of SCF 98.4 2E-07 4.3E-12 72.0 3.2 47 158-205 34-82 (88)
47 KOG1734 Predicted RING-contain 98.3 1.4E-07 3E-12 88.5 1.3 55 152-206 221-283 (328)
48 TIGR00599 rad18 DNA repair pro 98.3 2.9E-07 6.4E-12 92.3 3.7 49 154-206 25-73 (397)
49 PF13445 zf-RING_UBOX: RING-ty 98.3 3.2E-07 7E-12 63.6 2.6 39 158-197 1-43 (43)
50 smart00744 RINGv The RING-vari 98.3 5.1E-07 1.1E-11 64.4 3.3 43 157-200 1-49 (49)
51 COG5574 PEX10 RING-finger-cont 98.3 4.5E-07 9.8E-12 85.1 2.5 50 155-207 215-265 (271)
52 KOG0804 Cytoplasmic Zn-finger 98.2 6.9E-07 1.5E-11 89.1 2.1 48 154-204 174-222 (493)
53 cd04814 PA_M28_1 PA_M28_1: Pro 98.1 4.5E-06 9.8E-11 72.7 5.3 38 1-38 46-101 (142)
54 KOG2930 SCF ubiquitin ligase, 98.1 1.3E-06 2.7E-11 70.8 1.5 49 153-202 44-106 (114)
55 PF04564 U-box: U-box domain; 98.1 2E-06 4.3E-11 66.4 2.1 49 155-206 4-52 (73)
56 KOG2164 Predicted E3 ubiquitin 98.0 2.3E-06 5E-11 86.9 2.9 56 155-213 186-245 (513)
57 COG5219 Uncharacterized conser 98.0 1.1E-06 2.4E-11 93.9 0.4 53 152-204 1466-1523(1525)
58 TIGR00570 cdk7 CDK-activating 98.0 5.7E-06 1.2E-10 80.2 4.7 54 154-207 2-57 (309)
59 cd04822 PA_M28_1_3 PA_M28_1_3: 98.0 8.8E-06 1.9E-10 71.6 5.4 38 1-38 46-101 (151)
60 KOG4265 Predicted E3 ubiquitin 98.0 5E-06 1.1E-10 81.3 3.2 51 154-208 289-340 (349)
61 cd04820 PA_M28_1_1 PA_M28_1_1: 98.0 1.2E-05 2.6E-10 69.6 5.3 38 1-38 48-97 (137)
62 cd02131 PA_hNAALADL2_like PA_h 97.9 1.3E-05 2.8E-10 70.1 4.8 37 1-37 39-75 (153)
63 cd02121 PA_GCPII_like PA_GCPII 97.9 1.3E-05 2.8E-10 74.8 5.1 36 1-36 70-105 (220)
64 COG5432 RAD18 RING-finger-cont 97.9 6.5E-06 1.4E-10 78.1 2.0 47 155-205 25-71 (391)
65 PF11793 FANCL_C: FANCL C-term 97.9 3.6E-06 7.8E-11 64.6 0.2 50 156-205 3-67 (70)
66 KOG2177 Predicted E3 ubiquitin 97.8 7.2E-06 1.6E-10 77.1 1.6 43 154-200 12-54 (386)
67 KOG0287 Postreplication repair 97.7 1.2E-05 2.7E-10 77.8 1.8 49 155-207 23-71 (442)
68 KOG0827 Predicted E3 ubiquitin 97.7 1.6E-05 3.4E-10 78.3 2.0 48 156-204 5-56 (465)
69 KOG4445 Uncharacterized conser 97.7 1.7E-05 3.6E-10 75.7 1.9 55 154-208 114-190 (368)
70 KOG0824 Predicted E3 ubiquitin 97.7 2.1E-05 4.5E-10 75.3 2.1 54 155-211 7-60 (324)
71 KOG1645 RING-finger-containing 97.6 4.1E-05 9E-10 75.8 3.5 47 155-201 4-53 (463)
72 KOG1039 Predicted E3 ubiquitin 97.4 6.3E-05 1.4E-09 74.3 2.1 52 154-205 160-222 (344)
73 KOG0825 PHD Zn-finger protein 97.3 4.2E-05 9E-10 80.9 -0.4 47 155-202 123-169 (1134)
74 KOG0311 Predicted E3 ubiquitin 97.3 5.2E-05 1.1E-09 74.0 -0.3 55 154-211 42-97 (381)
75 KOG4172 Predicted E3 ubiquitin 97.2 6.6E-05 1.4E-09 54.0 -0.6 48 155-205 7-55 (62)
76 KOG1941 Acetylcholine receptor 97.1 0.00028 6E-09 69.7 2.3 47 155-201 365-413 (518)
77 PF14835 zf-RING_6: zf-RING of 97.0 0.00016 3.5E-09 54.0 0.3 47 156-207 8-54 (65)
78 KOG1785 Tyrosine kinase negati 97.0 0.0003 6.6E-09 69.6 1.5 50 156-208 370-420 (563)
79 KOG0978 E3 ubiquitin ligase in 96.9 0.00025 5.4E-09 75.4 0.5 47 155-204 643-689 (698)
80 KOG0801 Predicted E3 ubiquitin 96.9 0.00029 6.4E-09 61.8 0.5 41 141-182 164-204 (205)
81 PF11789 zf-Nse: Zinc-finger o 96.8 0.00058 1.3E-08 50.3 1.7 42 155-198 11-53 (57)
82 KOG1428 Inhibitor of type V ad 96.7 0.001 2.2E-08 74.3 2.9 56 152-207 3483-3547(3738)
83 PF05883 Baculo_RING: Baculovi 96.6 0.00084 1.8E-08 57.5 1.3 35 155-189 26-66 (134)
84 KOG1571 Predicted E3 ubiquitin 96.6 0.00031 6.6E-09 69.0 -1.8 44 154-204 304-347 (355)
85 KOG3970 Predicted E3 ubiquitin 96.4 0.0027 6E-08 58.6 3.6 53 155-208 50-109 (299)
86 PF12906 RINGv: RING-variant d 96.4 0.0024 5.3E-08 45.0 2.3 41 158-199 1-47 (47)
87 KOG0297 TNF receptor-associate 96.4 0.0018 3.8E-08 65.7 2.0 54 154-210 20-73 (391)
88 KOG4159 Predicted E3 ubiquitin 96.3 0.0021 4.5E-08 64.9 2.4 49 153-205 82-130 (398)
89 KOG1814 Predicted E3 ubiquitin 96.2 0.0032 6.9E-08 62.9 3.1 38 154-191 183-220 (445)
90 PF14570 zf-RING_4: RING/Ubox 96.0 0.0038 8.2E-08 44.2 1.5 45 158-203 1-47 (48)
91 PHA02862 5L protein; Provision 95.9 0.0053 1.1E-07 53.1 2.6 48 155-206 2-55 (156)
92 PHA02825 LAP/PHD finger-like p 95.7 0.0089 1.9E-07 52.6 3.2 50 154-207 7-62 (162)
93 PF10367 Vps39_2: Vacuolar sor 95.7 0.0046 1E-07 50.4 1.3 31 155-186 78-108 (109)
94 KOG1002 Nucleotide excision re 95.6 0.0049 1.1E-07 63.2 1.4 53 151-206 532-588 (791)
95 cd04821 PA_M28_1_2 PA_M28_1_2: 95.5 0.017 3.8E-07 51.2 4.3 37 1-37 48-103 (157)
96 KOG3039 Uncharacterized conser 95.4 0.02 4.2E-07 53.8 4.5 53 155-208 221-274 (303)
97 KOG0827 Predicted E3 ubiquitin 95.1 0.0014 3.1E-08 64.8 -4.0 52 155-207 196-248 (465)
98 COG5152 Uncharacterized conser 95.0 0.0092 2E-07 54.2 0.8 45 155-203 196-240 (259)
99 COG5222 Uncharacterized conser 95.0 0.014 3.1E-07 56.0 2.2 43 156-201 275-318 (427)
100 PHA03096 p28-like protein; Pro 94.9 0.013 2.7E-07 56.9 1.7 46 156-201 179-231 (284)
101 KOG4185 Predicted E3 ubiquitin 94.7 0.02 4.3E-07 55.5 2.6 48 156-203 4-54 (296)
102 KOG4739 Uncharacterized protei 94.6 0.019 4.1E-07 53.8 2.0 50 156-209 4-53 (233)
103 KOG1952 Transcription factor N 94.6 0.019 4.1E-07 62.1 2.1 47 154-200 190-243 (950)
104 KOG2879 Predicted E3 ubiquitin 94.5 0.039 8.4E-07 52.6 3.8 50 154-205 238-288 (298)
105 COG5236 Uncharacterized conser 93.7 0.053 1.2E-06 53.2 3.2 60 139-202 45-106 (493)
106 KOG4275 Predicted E3 ubiquitin 93.7 0.015 3.3E-07 55.7 -0.6 42 155-204 300-342 (350)
107 KOG2660 Locus-specific chromos 93.5 0.024 5.1E-07 55.4 0.3 51 154-207 14-64 (331)
108 KOG2114 Vacuolar assembly/sort 93.4 0.023 4.9E-07 61.5 0.1 41 156-202 841-881 (933)
109 KOG1813 Predicted E3 ubiquitin 93.2 0.032 7E-07 53.7 0.8 46 155-204 241-286 (313)
110 PF08746 zf-RING-like: RING-li 93.1 0.045 9.7E-07 37.9 1.1 42 158-199 1-43 (43)
111 PF14447 Prok-RING_4: Prokaryo 93.1 0.054 1.2E-06 39.4 1.6 45 156-206 8-52 (55)
112 KOG0826 Predicted E3 ubiquitin 92.0 0.22 4.7E-06 48.8 4.6 48 153-203 298-345 (357)
113 COG5175 MOT2 Transcriptional r 91.8 0.11 2.4E-06 51.0 2.4 51 156-206 15-66 (480)
114 PF04641 Rtf2: Rtf2 RING-finge 91.8 0.24 5.3E-06 47.4 4.8 52 153-206 111-163 (260)
115 PF10272 Tmpp129: Putative tra 91.7 0.16 3.5E-06 50.8 3.5 30 176-205 311-352 (358)
116 KOG1001 Helicase-like transcri 91.6 0.071 1.5E-06 57.6 0.9 50 156-209 455-505 (674)
117 KOG4692 Predicted E3 ubiquitin 91.5 0.12 2.5E-06 51.1 2.2 49 153-205 420-468 (489)
118 PF14446 Prok-RING_1: Prokaryo 91.4 0.21 4.6E-06 36.3 2.9 33 155-187 5-38 (54)
119 KOG3268 Predicted E3 ubiquitin 91.2 0.11 2.3E-06 46.6 1.5 52 155-206 165-230 (234)
120 KOG1100 Predicted E3 ubiquitin 89.8 0.13 2.9E-06 47.6 0.9 41 157-205 160-201 (207)
121 KOG1940 Zn-finger protein [Gen 89.6 0.16 3.5E-06 48.9 1.3 46 155-201 158-204 (276)
122 KOG2034 Vacuolar sorting prote 89.2 0.17 3.7E-06 55.2 1.4 34 155-189 817-850 (911)
123 KOG3053 Uncharacterized conser 88.3 0.22 4.8E-06 47.1 1.3 53 154-206 19-84 (293)
124 KOG3161 Predicted E3 ubiquitin 88.2 0.16 3.4E-06 53.6 0.3 43 156-202 12-55 (861)
125 KOG3002 Zn finger protein [Gen 87.5 0.34 7.3E-06 47.4 2.0 44 154-205 47-92 (299)
126 KOG2932 E3 ubiquitin ligase in 87.4 0.22 4.7E-06 48.4 0.6 41 156-201 91-131 (389)
127 PF07800 DUF1644: Protein of u 87.3 0.57 1.2E-05 41.4 3.2 57 155-211 2-98 (162)
128 KOG0298 DEAD box-containing he 85.4 0.28 6.1E-06 55.6 0.3 48 154-204 1152-1199(1394)
129 KOG3800 Predicted E3 ubiquitin 85.2 0.73 1.6E-05 44.5 2.9 45 157-201 2-48 (300)
130 KOG1829 Uncharacterized conser 83.7 0.41 8.9E-06 50.6 0.6 41 155-199 511-556 (580)
131 KOG1609 Protein involved in mR 83.5 0.54 1.2E-05 45.5 1.4 52 155-206 78-136 (323)
132 KOG0309 Conserved WD40 repeat- 82.8 0.74 1.6E-05 49.6 2.1 26 172-198 1044-1069(1081)
133 COG5220 TFB3 Cdk activating ki 82.6 0.72 1.6E-05 43.4 1.7 46 154-199 9-59 (314)
134 KOG0825 PHD Zn-finger protein 82.1 0.68 1.5E-05 50.1 1.5 53 154-206 95-156 (1134)
135 COG5183 SSM4 Protein involved 81.4 1.4 3.1E-05 47.9 3.5 54 154-208 11-70 (1175)
136 KOG2195 Transferrin receptor a 81.2 1.6 3.5E-05 47.5 4.0 36 1-36 183-218 (702)
137 smart00249 PHD PHD zinc finger 80.0 0.63 1.4E-05 31.2 0.3 31 157-187 1-31 (47)
138 KOG0802 E3 ubiquitin ligase [P 79.1 1 2.2E-05 47.7 1.6 47 154-208 478-524 (543)
139 KOG1812 Predicted E3 ubiquitin 78.8 0.88 1.9E-05 46.1 1.0 37 155-191 146-183 (384)
140 KOG2817 Predicted E3 ubiquitin 77.8 1.8 4E-05 43.5 2.9 46 155-200 334-381 (394)
141 PF13901 DUF4206: Domain of un 77.2 1.2 2.7E-05 40.9 1.4 41 155-201 152-197 (202)
142 KOG3899 Uncharacterized conser 75.7 1.5 3.2E-05 42.5 1.5 30 176-205 325-366 (381)
143 KOG4362 Transcriptional regula 73.6 0.92 2E-05 48.8 -0.5 47 156-205 22-70 (684)
144 KOG2807 RNA polymerase II tran 67.7 5 0.00011 39.5 3.1 69 132-201 306-375 (378)
145 PF02891 zf-MIZ: MIZ/SP-RING z 67.6 3.4 7.3E-05 29.4 1.5 44 156-202 3-50 (50)
146 PF15050 SCIMP: SCIMP protein 65.0 8.6 0.00019 32.5 3.6 11 87-97 8-18 (133)
147 PF05290 Baculo_IE-1: Baculovi 63.3 5.6 0.00012 34.3 2.2 48 154-204 79-132 (140)
148 TIGR00622 ssl1 transcription f 61.4 8.3 0.00018 32.3 2.9 45 155-200 55-110 (112)
149 PF00628 PHD: PHD-finger; Int 59.8 4 8.7E-05 28.4 0.7 45 157-201 1-50 (51)
150 KOG4718 Non-SMC (structural ma 58.5 5 0.00011 37.2 1.2 42 155-199 181-222 (235)
151 KOG3005 GIY-YIG type nuclease 58.4 5.4 0.00012 38.3 1.5 47 156-202 183-241 (276)
152 KOG0269 WD40 repeat-containing 57.8 7.8 0.00017 42.2 2.7 41 156-198 780-820 (839)
153 PF03854 zf-P11: P-11 zinc fin 57.4 6.1 0.00013 28.0 1.2 43 157-205 4-47 (50)
154 KOG4367 Predicted Zn-finger pr 57.1 6.3 0.00014 40.2 1.8 34 155-191 4-37 (699)
155 PF05393 Hum_adeno_E3A: Human 56.2 7 0.00015 31.2 1.5 6 107-112 49-54 (94)
156 KOG0260 RNA polymerase II, lar 55.1 3E+02 0.0065 32.3 14.1 14 155-168 1391-1404(1605)
157 KOG0260 RNA polymerase II, lar 55.1 3E+02 0.0066 32.2 14.2 11 13-23 1194-1204(1605)
158 KOG1815 Predicted E3 ubiquitin 54.9 7.4 0.00016 40.2 1.9 36 154-191 69-104 (444)
159 smart00132 LIM Zinc-binding do 54.7 13 0.00029 23.5 2.5 37 157-203 1-37 (39)
160 KOG2066 Vacuolar assembly/sort 54.0 5.8 0.00012 43.3 1.0 42 156-199 785-830 (846)
161 KOG3579 Predicted E3 ubiquitin 53.4 7.1 0.00015 37.8 1.4 36 155-191 268-305 (352)
162 cd03029 GRX_hybridPRX5 Glutare 52.1 20 0.00044 26.5 3.5 56 4-60 2-58 (72)
163 PF13717 zinc_ribbon_4: zinc-r 50.7 7.4 0.00016 25.7 0.7 25 157-181 4-36 (36)
164 PF07975 C1_4: TFIIH C1-like d 49.1 12 0.00027 26.8 1.7 41 158-200 2-50 (51)
165 TIGR02190 GlrX-dom Glutaredoxi 47.8 22 0.00047 27.1 3.1 58 2-60 7-65 (79)
166 PF14569 zf-UDP: Zinc-binding 47.0 21 0.00045 28.0 2.8 58 154-211 8-69 (80)
167 PLN02189 cellulose synthase 45.3 28 0.00061 39.5 4.6 58 154-211 33-94 (1040)
168 KOG3113 Uncharacterized conser 43.2 25 0.00054 33.6 3.3 50 155-207 111-161 (293)
169 PF06716 DUF1201: Protein of u 42.6 35 0.00075 24.0 3.1 30 92-121 12-41 (54)
170 PF06679 DUF1180: Protein of u 39.5 21 0.00046 31.9 2.1 25 94-118 97-121 (163)
171 PRK10824 glutaredoxin-4; Provi 39.1 34 0.00074 28.7 3.2 59 2-61 14-79 (115)
172 KOG2071 mRNA cleavage and poly 39.0 17 0.00036 38.7 1.6 34 154-188 512-556 (579)
173 KOG0824 Predicted E3 ubiquitin 38.5 41 0.0009 32.9 4.0 51 154-207 104-154 (324)
174 cd03027 GRX_DEP Glutaredoxin ( 38.4 48 0.001 24.5 3.7 54 3-60 1-59 (73)
175 PF15102 TMEM154: TMEM154 prot 38.2 19 0.00041 31.6 1.6 8 184-191 129-136 (146)
176 cd03028 GRX_PICOT_like Glutare 38.2 43 0.00094 26.2 3.6 58 2-60 7-71 (90)
177 PLN02436 cellulose synthase A 37.9 41 0.00089 38.5 4.4 57 155-211 36-96 (1094)
178 PF13719 zinc_ribbon_5: zinc-r 37.9 17 0.00038 24.0 1.0 26 156-181 3-36 (37)
179 KOG1812 Predicted E3 ubiquitin 35.9 17 0.00037 36.9 1.1 44 155-199 306-351 (384)
180 KOG1729 FYVE finger containing 35.0 8.5 0.00018 37.5 -1.2 36 156-191 215-250 (288)
181 PF07649 C1_3: C1-like domain; 34.7 28 0.0006 21.7 1.5 29 157-185 2-30 (30)
182 PF14914 LRRC37AB_C: LRRC37A/B 34.5 54 0.0012 28.8 3.7 35 81-115 113-147 (154)
183 PF04710 Pellino: Pellino; In 33.8 14 0.0003 37.5 0.0 46 154-202 276-337 (416)
184 PF00412 LIM: LIM domain; Int 33.7 38 0.00082 23.8 2.3 39 158-206 1-39 (58)
185 PF02009 Rifin_STEVOR: Rifin/s 33.4 31 0.00068 33.8 2.4 21 95-115 262-282 (299)
186 PF04423 Rad50_zn_hook: Rad50 32.3 11 0.00024 26.9 -0.7 11 195-205 22-32 (54)
187 KOG3842 Adaptor protein Pellin 32.0 45 0.00098 32.9 3.2 53 154-206 340-416 (429)
188 PF15050 SCIMP: SCIMP protein 31.8 33 0.00071 29.1 1.9 21 90-110 8-28 (133)
189 KOG3039 Uncharacterized conser 31.6 31 0.00067 32.9 1.9 35 154-191 42-76 (303)
190 PF10571 UPF0547: Uncharacteri 31.4 22 0.00049 21.8 0.7 22 157-180 2-24 (26)
191 TIGR00365 monothiol glutaredox 30.2 69 0.0015 25.6 3.6 59 2-61 11-76 (97)
192 PF01363 FYVE: FYVE zinc finge 30.0 26 0.00055 26.0 0.9 36 154-189 8-44 (69)
193 PRK11200 grxA glutaredoxin 1; 30.0 1.1E+02 0.0024 23.3 4.6 55 4-59 2-65 (85)
194 KOG4185 Predicted E3 ubiquitin 29.2 10 0.00023 36.5 -1.7 49 155-203 207-266 (296)
195 PF06844 DUF1244: Protein of u 29.0 33 0.00073 26.0 1.4 12 180-191 12-23 (68)
196 COG5109 Uncharacterized conser 28.9 36 0.00079 33.6 2.0 44 156-199 337-382 (396)
197 PRK10638 glutaredoxin 3; Provi 28.8 79 0.0017 24.1 3.6 56 4-59 3-59 (83)
198 PF14654 Epiglycanin_C: Mucin, 28.5 84 0.0018 25.7 3.6 32 84-115 14-45 (106)
199 COG0695 GrxC Glutaredoxin and 28.3 1.2E+02 0.0026 23.3 4.5 57 4-60 2-61 (80)
200 cd00860 ThrRS_anticodon ThrRS 26.9 1.5E+02 0.0032 22.4 4.9 32 5-36 30-61 (91)
201 COG4847 Uncharacterized protei 26.6 55 0.0012 26.6 2.3 34 156-190 7-40 (103)
202 PF06024 DUF912: Nucleopolyhed 26.4 50 0.0011 26.9 2.1 10 90-99 66-75 (101)
203 KOG3842 Adaptor protein Pellin 25.9 28 0.0006 34.4 0.6 44 154-202 289-350 (429)
204 cd02066 GRX_family Glutaredoxi 25.8 91 0.002 21.9 3.3 56 4-59 1-57 (72)
205 TIGR01477 RIFIN variant surfac 25.2 56 0.0012 32.8 2.6 23 93-115 314-336 (353)
206 PF05715 zf-piccolo: Piccolo Z 25.1 48 0.001 24.6 1.6 17 193-209 2-18 (61)
207 PF10083 DUF2321: Uncharacteri 24.9 38 0.00083 30.0 1.2 47 159-209 8-55 (158)
208 PF08029 HisG_C: HisG, C-termi 24.4 68 0.0015 24.8 2.4 23 13-35 50-72 (75)
209 PLN02638 cellulose synthase A 24.4 96 0.0021 35.6 4.5 55 155-209 17-75 (1079)
210 PTZ00046 rifin; Provisional 24.4 60 0.0013 32.7 2.6 23 93-115 319-341 (358)
211 PLN02915 cellulose synthase A 24.1 96 0.0021 35.5 4.4 57 154-210 14-74 (1044)
212 cd03418 GRX_GRXb_1_3_like Glut 23.9 1E+02 0.0022 22.5 3.3 57 4-60 1-59 (75)
213 PF05568 ASFV_J13L: African sw 23.9 88 0.0019 27.5 3.2 17 91-107 31-47 (189)
214 PF04710 Pellino: Pellino; In 22.7 28 0.00061 35.3 0.0 51 155-205 328-402 (416)
215 KOG2068 MOT2 transcription fac 22.6 1.1E+02 0.0024 30.4 4.0 47 156-204 250-298 (327)
216 PF00130 C1_1: Phorbol esters/ 22.2 49 0.0011 23.0 1.2 33 155-187 11-45 (53)
217 PF05605 zf-Di19: Drought indu 22.0 10 0.00022 27.1 -2.5 37 155-201 2-39 (54)
218 PF13832 zf-HC5HC2H_2: PHD-zin 21.7 89 0.0019 25.3 2.8 31 155-187 55-87 (110)
219 PRK03972 ribosomal biogenesis 21.6 1.6E+02 0.0034 27.5 4.6 33 6-38 29-61 (208)
220 PF04971 Lysis_S: Lysis protei 21.6 95 0.002 23.7 2.6 31 82-112 27-57 (68)
221 cd00861 ProRS_anticodon_short 21.1 1.1E+02 0.0025 23.3 3.2 25 10-35 39-63 (94)
222 KOG1512 PHD Zn-finger protein 20.8 40 0.00087 32.8 0.6 33 154-186 313-345 (381)
223 PF06906 DUF1272: Protein of u 20.6 1.5E+02 0.0032 21.8 3.3 46 156-204 6-52 (57)
224 PLN02400 cellulose synthase 20.1 99 0.0021 35.6 3.5 57 155-211 36-96 (1085)
225 TIGR02189 GlrX-like_plant Glut 20.1 1.5E+02 0.0032 23.7 3.7 60 2-61 7-70 (99)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-46 Score=362.50 Aligned_cols=219 Identities=57% Similarity=0.936 Sum_probs=197.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEecccccccccccccccccccccc-
Q 017521 3 SAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGSTDMEIWIIP- 81 (370)
Q Consensus 3 ~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~l~~~~vev~L~p- 81 (370)
..+|||+||+|+|++|++|||++|++|+|||||.+.+.++.|.++..++.|+++||+...|+.|.++.+...++++..+
T Consensus 80 ~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~l~~~~~~~~~~~~~~~~ 159 (348)
T KOG4628|consen 80 SFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGELLSSYAGRTEFECLLIPL 159 (348)
T ss_pred ceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHHHHHhhcccceeeeeccc
Confidence 5799999999999999999999999999999999888899999999999999999999999999999999888888888
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccHHHHhccceeeeeeeeeccCCCcccccc
Q 017521 82 SFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAIC 161 (370)
Q Consensus 82 ~~e~s~~sIm~I~fI~ll~i~~vL~~~~~~~r~r~rr~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~C~IC 161 (370)
.++...|.++.+.|+.++++..+++.+|++++++.....+.. ++.+++.++.++++|...|+...+++.. ..|+||
T Consensus 160 ~~~~~~ws~~~~~~i~~l~v~~il~~~f~i~~~~~~~~~r~~---~~~~r~~k~~l~~~p~~~f~~~~~~~~~-~~CaIC 235 (348)
T KOG4628|consen 160 GFDTSPWSILAISLISLLTVVAILVTCFFIYRIRRLIRARNR---LRRNRLIKRLLKKLPVRTFTKGDDEDAT-DTCAIC 235 (348)
T ss_pred cccCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH---hhhhhhHHHHHhhCCcEEeccccccCCC-ceEEEe
Confidence 889999999999899999999999888888776654433222 4667899999999999999987776654 799999
Q ss_pred cccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCCCCCCCCCCCCCCCCCCCC
Q 017521 162 LEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSSSPAS 225 (370)
Q Consensus 162 Le~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~~~~~~~~~~~~~~~~~ 225 (370)
||+|+.||++|+|||+|.||..|||+||.++++.||+||+++....+.++..|++|..+..++.
T Consensus 236 lEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e~tp~~~~~~~~ 299 (348)
T KOG4628|consen 236 LEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSEDTPLLSQGPSS 299 (348)
T ss_pred ecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCCCCccCCCccccCCCCc
Confidence 9999999999999999999999999999998888999999999999999999999988877755
No 2
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.67 E-value=6.3e-17 Score=136.47 Aligned_cols=72 Identities=24% Similarity=0.300 Sum_probs=60.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEeccccccccccccc
Q 017521 1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGS 72 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~l~~ 72 (370)
++|+||||+||+|+|.+|++|||++||+|||||||++........++...++||++||++.+|+.|++.++.
T Consensus 43 l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 43 LKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred cCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHHHHHhcc
Confidence 479999999999999999999999999999999987642222223334568999999999999999888874
No 3
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.2e-17 Score=155.46 Aligned_cols=52 Identities=40% Similarity=1.052 Sum_probs=47.2
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 205 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 205 (370)
.+.+|+|||++|..+|++++|||+|.||..|+++|+...+..||+||.++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 4579999999999999999999999999999999999766669999998864
No 4
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.64 E-value=2.9e-16 Score=132.51 Aligned_cols=74 Identities=34% Similarity=0.443 Sum_probs=62.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCC--cceeeccCC--CCCceeeEEEEeccccccccccccccc
Q 017521 1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDD--GVLVAMAGN--SAGIKIHAVFVSKASGEKLKQYAGSTD 74 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~--~~~~~m~g~--~~~i~IpvVfIs~~~Ge~L~k~l~~~~ 74 (370)
++|+||||+||+|+|.+|+++||++||+||||||+.++ .....|.++ ...++||+++|++.+|+.|++.+....
T Consensus 33 ~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG~~L~~~l~~g~ 110 (118)
T cd02127 33 INGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNGYMIRKTLERLG 110 (118)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999999999998654 234556655 346789999999999999998887654
No 5
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.64 E-value=3.6e-16 Score=131.79 Aligned_cols=72 Identities=36% Similarity=0.533 Sum_probs=62.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeecc--CCCCCceeeEEEEeccccccccccccc
Q 017521 1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMA--GNSAGIKIHAVFVSKASGEKLKQYAGS 72 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~--g~~~~i~IpvVfIs~~~Ge~L~k~l~~ 72 (370)
++||||||+||+|+|.+|++|||++||++|||||+.+...+..|. +....++||+++|++.+|+.|+.++++
T Consensus 38 l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~L~~l~~~ 111 (117)
T cd04813 38 IDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYHLLSSLLPK 111 (117)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHHHHHHhccc
Confidence 579999999999999999999999999999999987754455565 334567999999999999999988876
No 6
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.61 E-value=1.2e-15 Score=134.58 Aligned_cols=74 Identities=54% Similarity=0.847 Sum_probs=64.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCC---CceeeEEEEecccccccccccccccc
Q 017521 1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSA---GIKIHAVFVSKASGEKLKQYAGSTDM 75 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~---~i~IpvVfIs~~~Ge~L~k~l~~~~v 75 (370)
+.++||||+||+|+|.+|++|||++||+||||||++++ ....|.++.. .++||+++|++.+|+.|++.+.....
T Consensus 66 ~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~-~~~~m~~~~~~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 66 SGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESN-DLISMSGNDQEIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCC-cceeccCCCCCCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 36899999999999999999999999999999998775 4566766554 68999999999999999998877544
No 7
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.61 E-value=7.7e-16 Score=131.60 Aligned_cols=70 Identities=40% Similarity=0.534 Sum_probs=59.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccC--------CCCCceeeEEEEeccccccccccccc
Q 017521 2 SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAG--------NSAGIKIHAVFVSKASGEKLKQYAGS 72 (370)
Q Consensus 2 ~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g--------~~~~i~IpvVfIs~~~Ge~L~k~l~~ 72 (370)
.++||||+||+|+|.+|++|||++||+||||||++++ .+..|.. ...+++||++||++.+|+.|++.+..
T Consensus 42 ~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~-~~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~l~~ 119 (127)
T cd02125 42 RPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDE-PLLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKAISN 119 (127)
T ss_pred CceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCC-ccccccCcccccccccCCCceEeEEEECHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999998775 3344432 22457899999999999999988765
No 8
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.61 E-value=9.7e-16 Score=130.81 Aligned_cols=72 Identities=32% Similarity=0.517 Sum_probs=61.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCc-----ceeeccCCC---CCceeeEEEEeccccccccccccc
Q 017521 1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDG-----VLVAMAGNS---AGIKIHAVFVSKASGEKLKQYAGS 72 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~-----~~~~m~g~~---~~i~IpvVfIs~~~Ge~L~k~l~~ 72 (370)
++||||||+||+|+|.+|+++||++||+||||||+.++. .+..|.++. ..+.||+++|++.+|+.|+..+..
T Consensus 39 ~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~~~dG~~L~~~l~~ 118 (126)
T cd02126 39 VKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFSKEGSKLLAAIKE 118 (126)
T ss_pred cCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEEHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999876542 355666654 367999999999999999988765
No 9
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.58 E-value=2.2e-15 Score=130.48 Aligned_cols=71 Identities=23% Similarity=0.390 Sum_probs=60.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCC-CcceeeccCCCCCceeeEEEEeccccccccccccc
Q 017521 1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNED-DGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGS 72 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~-~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~l~~ 72 (370)
+.++||||+||+|+|.+|++|||++||++|||||+++ ......|..+. ...||+++|++.+|+.|++.+..
T Consensus 59 ~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~-~~~ip~v~Is~~~G~~l~~~l~~ 130 (138)
T cd02122 59 GEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPG-TGDIVAIMITNPKGMEILELLER 130 (138)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCC-CCcceEEEEcHHHHHHHHHHHHc
Confidence 3689999999999999999999999999999999987 33456665443 34789999999999999998865
No 10
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.56 E-value=4.4e-15 Score=128.49 Aligned_cols=72 Identities=36% Similarity=0.430 Sum_probs=61.1
Q ss_pred CCceEEEEEcCCCC-----hHHHHHHHHHcCCcEEEEeccCCC-cceeeccCCCC-CceeeEEEEeccccccccccccc
Q 017521 1 MSSAFVLTIRGGCS-----FEDKVRNAQKAGFEAAIVYDNEDD-GVLVAMAGNSA-GIKIHAVFVSKASGEKLKQYAGS 72 (370)
Q Consensus 1 l~~~ivLV~RG~Cs-----F~~Kv~nAq~aGA~avIVyn~~~~-~~~~~m~g~~~-~i~IpvVfIs~~~Ge~L~k~l~~ 72 (370)
++|||+||+||+|+ |.+|+++|+++||+|||||||++. +.+..+.++.. .+.||+++|++.+|+.|+..++.
T Consensus 55 ~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~~l~~ 133 (139)
T cd04817 55 MAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLAALGQ 133 (139)
T ss_pred cCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHHHhcC
Confidence 57999999999999 999999999999999999999843 23344555443 67999999999999999988765
No 11
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.54 E-value=6.7e-15 Score=127.72 Aligned_cols=71 Identities=25% Similarity=0.514 Sum_probs=59.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCC----CCCceeeEEEEecccccccccccccc
Q 017521 1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGN----SAGIKIHAVFVSKASGEKLKQYAGST 73 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~----~~~i~IpvVfIs~~~Ge~L~k~l~~~ 73 (370)
++|+||||+||+|+|.+|++|||++||++|||||+.+. +..|.+. ...+.||+++|++.+|+.|++.+...
T Consensus 58 ~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~--~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~~l~~g 132 (139)
T cd02132 58 LSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEE--LYKMVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQG 132 (139)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCc--ccccccCCCCCCCCCcEeEEEecHHHHHHHHHHHHcC
Confidence 57999999999999999999999999999999998764 3445432 12478999999999999999888763
No 12
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.50 E-value=2.4e-14 Score=121.26 Aligned_cols=72 Identities=32% Similarity=0.457 Sum_probs=60.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEeccccccccccccc
Q 017521 1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGS 72 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~l~~ 72 (370)
++||||||+||+|+|.+|++||+++||++|||||+...+....+.+......||+++|++.+|+.|++.+..
T Consensus 43 ~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~~l~~ 114 (122)
T cd02130 43 VAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVAALAN 114 (122)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHHHHhc
Confidence 579999999999999999999999999999999987433333344444467899999999999999988765
No 13
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.50 E-value=7.7e-15 Score=102.31 Aligned_cols=44 Identities=48% Similarity=1.140 Sum_probs=39.4
Q ss_pred cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccc
Q 017521 156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 200 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR 200 (370)
++|+||+++|..++.+..|+|+|+||.+||..|++.+. +||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~-~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNN-SCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSS-B-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCC-cCCccC
Confidence 36999999999999999999999999999999999955 699997
No 14
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.46 E-value=5.3e-14 Score=114.15 Aligned_cols=69 Identities=41% Similarity=0.633 Sum_probs=53.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEecccccccccc
Q 017521 1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQY 69 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~ 69 (370)
++||||||+||+|+|.+|+++||++||+||||||..+...............||+++|++.+|+.|+++
T Consensus 32 ~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~~~ 100 (101)
T PF02225_consen 32 VKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALLAY 100 (101)
T ss_dssp CTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHHHH
T ss_pred ccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhhcc
Confidence 589999999999999999999999999999999932222222222334467899999999999999765
No 15
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.45 E-value=1e-13 Score=117.46 Aligned_cols=73 Identities=34% Similarity=0.536 Sum_probs=60.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCC-CCceeeEEEEecccccccccccccc
Q 017521 1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNS-AGIKIHAVFVSKASGEKLKQYAGST 73 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~-~~i~IpvVfIs~~~Ge~L~k~l~~~ 73 (370)
++||||||+||+|+|.+|++||+++||+|+||||+++......+..+. ....||+++|++.+|+.|+++++..
T Consensus 42 ~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l~~~l~~g 115 (122)
T cd04816 42 VKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAALRRRLGAG 115 (122)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHHHHHHcCC
Confidence 579999999999999999999999999999999987743332232222 4567999999999999999988764
No 16
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=9.4e-13 Score=127.29 Aligned_cols=74 Identities=27% Similarity=0.683 Sum_probs=53.8
Q ss_pred cHHHHhccceeeeeeeeeccCCCcccccccccc-cCC---------CeeEEeCCCCcccHhHHHHHHhcCCCCCcccccc
Q 017521 133 SRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDY-SVG---------EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 202 (370)
Q Consensus 133 ~~~~~~~lp~~~~~~~~~~~~~~~~C~ICLe~~-~~~---------~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~ 202 (370)
.+++.+.+++...++. ..++..|.||+|++ ..+ .+-+.|||||+||.+|++.|++++++ ||+||.+
T Consensus 268 ~kdl~~~~~t~t~eql---~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQT-CPICr~p 343 (491)
T COG5243 268 TKDLNAMYPTATEEQL---TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQT-CPICRRP 343 (491)
T ss_pred hhHHHhhcchhhhhhh---cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccC-CCcccCc
Confidence 3455555665543333 33568999999994 433 13478999999999999999999776 9999999
Q ss_pred -cccCCCCC
Q 017521 203 -ARTSTGEP 210 (370)
Q Consensus 203 -i~~~~~~~ 210 (370)
+.++..+.
T Consensus 344 ~ifd~~~~~ 352 (491)
T COG5243 344 VIFDQSSPT 352 (491)
T ss_pred cccccCCCC
Confidence 55555543
No 17
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.38 E-value=8.2e-13 Score=111.14 Aligned_cols=77 Identities=36% Similarity=0.538 Sum_probs=64.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEeccccccccccccc-ccccc
Q 017521 1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGS-TDMEI 77 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~l~~-~~vev 77 (370)
++||||||+||+|+|.+|+++|+++||+|+||||+.+......|.++.....||+++|++.+|+.|++++.. ..+.+
T Consensus 39 v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v 116 (118)
T cd04818 39 FAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALKAALAAGGTVTV 116 (118)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHHHHHhcCCcEEE
Confidence 579999999999999999999999999999999988754444555544456799999999999999999875 34443
No 18
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.30 E-value=2.8e-12 Score=109.90 Aligned_cols=68 Identities=28% Similarity=0.396 Sum_probs=53.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEeccccccccccccc
Q 017521 1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGS 72 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~l~~ 72 (370)
++|+||||+||+|+|.+|++||+++||++|||||+++.. +. +.+... ..++.+++ +.+|+.|++.+..
T Consensus 54 ~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~-~~-~~~~~~-~~~~~~~~-~~~G~~l~~~l~~ 121 (129)
T cd02124 54 LSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGP-TD-QVGSDA-DSIIAAVT-PEDGEAWIDALAA 121 (129)
T ss_pred ccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCc-cc-ccCCCC-cceeeEEe-HHHHHHHHHHHhc
Confidence 479999999999999999999999999999999987652 22 223222 23555555 9999999988765
No 19
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.26 E-value=6.5e-12 Score=97.20 Aligned_cols=45 Identities=36% Similarity=0.846 Sum_probs=35.4
Q ss_pred CcccccccccccC----------CCeeEEeCCCCcccHhHHHHHHhcCCCCCcccc
Q 017521 155 SRTCAICLEDYSV----------GEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 200 (370)
Q Consensus 155 ~~~C~ICLe~~~~----------~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR 200 (370)
++.|+||+++|.. +-.+...+|+|.||..||.+||+.++ +||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence 4569999999933 23456668999999999999999855 699998
No 20
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.23 E-value=1.6e-11 Score=122.67 Aligned_cols=106 Identities=27% Similarity=0.456 Sum_probs=73.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccC---CCCCceeeEEEEecccccccccccc-ccccc
Q 017521 1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAG---NSAGIKIHAVFVSKASGEKLKQYAG-STDME 76 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g---~~~~i~IpvVfIs~~~Ge~L~k~l~-~~~ve 76 (370)
+++++++|.||+|.|.+|+++||++||.|++|.||..+ .+.+..+ ...++.||++||.+++|+.+.+... ...++
T Consensus 94 l~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d-~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~ 172 (541)
T KOG2442|consen 94 LSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKD-LLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVE 172 (541)
T ss_pred ccceeEEEecccceeehhhhhhhhcCceEEEEEcCchh-hccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEE
Confidence 47899999999999999999999999999999998654 2222222 2357899999999999999886433 35667
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHhhhh
Q 017521 77 IWIIPSFENSAWSIMAISFISLLAMSAVLATCF 109 (370)
Q Consensus 77 v~L~p~~e~s~~sIm~I~fI~ll~i~~vL~~~~ 109 (370)
+.++.+.+.... +.+.||.++++..++..-+
T Consensus 173 ~~lYaPk~P~vD--~~~v~iwlmAVgTVa~ggy 203 (541)
T KOG2442|consen 173 LALYAPKRPAVD--YAMVFIWLMAVGTVACGGY 203 (541)
T ss_pred EEEECCCCCCcc--HHHHHHHHHHHhHhhccch
Confidence 666544433322 2333444445555544433
No 21
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.23 E-value=1.4e-11 Score=103.64 Aligned_cols=72 Identities=43% Similarity=0.591 Sum_probs=58.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcc-eeeccCC-CCCceeeEEEEeccccccccccccc
Q 017521 1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGV-LVAMAGN-SAGIKIHAVFVSKASGEKLKQYAGS 72 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~-~~~m~g~-~~~i~IpvVfIs~~~Ge~L~k~l~~ 72 (370)
++||||||+||+|+|.+|+++|+++||+|+||+|+.+... ...+.++ .....||+++|+..+|+.|++++..
T Consensus 45 ~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g~~l~~~~~~ 118 (126)
T cd00538 45 VKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGEALLSLLEA 118 (126)
T ss_pred ccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999876421 2122221 2346799999999999999988865
No 22
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.21 E-value=1.8e-11 Score=106.57 Aligned_cols=69 Identities=33% Similarity=0.460 Sum_probs=57.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEeccccccccccccc
Q 017521 1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGS 72 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~l~~ 72 (370)
++||||||+||+|.|.+|+++|+++||+||||||+++.. ..+.... ...||+++|++.+|+.|++++..
T Consensus 46 v~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~--~~~~~~~-~~~iP~v~Is~~dG~~L~~~l~~ 114 (143)
T cd02133 46 VKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGL--IPGTLGE-AVFIPVVFISKEDGEALKAALES 114 (143)
T ss_pred ccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCc--ccccCCC-CCeEeEEEecHHHHHHHHHHHhC
Confidence 579999999999999999999999999999999987652 2222111 34699999999999999988865
No 23
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.18 E-value=1.4e-11 Score=115.34 Aligned_cols=73 Identities=27% Similarity=0.570 Sum_probs=52.1
Q ss_pred cccHHHHhccceeeeeeeee-ccCCCcccccccccccCCC----eeEE-eCCCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521 131 GMSRRLVKAMPSLIFTAVVE-DNCTSRTCAICLEDYSVGE----KLRI-LPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 204 (370)
Q Consensus 131 ~~~~~~~~~lp~~~~~~~~~-~~~~~~~C~ICLe~~~~~~----~v~~-lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~ 204 (370)
+..+.+++.+|.+...-... +...+.+|+||+|.+..++ .+.+ ++|+|.||..||.+|+..+ .+||+||..+.
T Consensus 149 ~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~-~tCPlCR~~~~ 227 (238)
T PHA02929 149 KNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK-NTCPVCRTPFI 227 (238)
T ss_pred chhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC-CCCCCCCCEee
Confidence 34667788888765332211 2234689999999987543 1234 4699999999999999974 45999998765
No 24
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.05 E-value=2.7e-10 Score=97.27 Aligned_cols=73 Identities=21% Similarity=0.183 Sum_probs=58.6
Q ss_pred CCceEEEEEcCCC--ChHHHHHHHHHcCCcEEEEeccCCCccee-eccCC--CCCceeeEEEEecccccccccccccc
Q 017521 1 MSSAFVLTIRGGC--SFEDKVRNAQKAGFEAAIVYDNEDDGVLV-AMAGN--SAGIKIHAVFVSKASGEKLKQYAGST 73 (370)
Q Consensus 1 l~~~ivLV~RG~C--sF~~Kv~nAq~aGA~avIVyn~~~~~~~~-~m~g~--~~~i~IpvVfIs~~~Ge~L~k~l~~~ 73 (370)
++||||||+||.| +|.+|+++|+++||+||||||+.+..... ...+. .....||++.|++.+|+.|.+.+...
T Consensus 43 v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g 120 (127)
T cd04819 43 LEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARVAERN 120 (127)
T ss_pred CCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHHHhcC
Confidence 5899999999999 99999999999999999999876553221 11122 22457999999999999999888763
No 25
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.98 E-value=5.4e-10 Score=100.96 Aligned_cols=54 Identities=31% Similarity=0.618 Sum_probs=43.1
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc---------------CCCCCcccccccccCCCCC
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---------------WRTFCPVCKRDARTSTGEP 210 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~---------------~~~~CP~CR~~i~~~~~~~ 210 (370)
+..+|+||++.+++. .+++|||.||..||..|+.. .+..||+||.++......+
T Consensus 17 ~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvP 85 (193)
T PLN03208 17 GDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP 85 (193)
T ss_pred CccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEE
Confidence 457999999998654 56889999999999999853 2346999999997755443
No 26
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.97 E-value=5e-10 Score=76.62 Aligned_cols=45 Identities=42% Similarity=1.082 Sum_probs=37.1
Q ss_pred ccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccc
Q 017521 157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 203 (370)
Q Consensus 157 ~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i 203 (370)
+|+||++.+ .+.+..++|+|.||..|++.|+...+..||+||..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 345566679999999999999997455699998754
No 27
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=6.3e-10 Score=102.37 Aligned_cols=54 Identities=30% Similarity=0.514 Sum_probs=43.5
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc--CCCCCcccccccccCCCC
Q 017521 153 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVCKRDARTSTGE 209 (370)
Q Consensus 153 ~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~--~~~~CP~CR~~i~~~~~~ 209 (370)
....+|.||||.-++. +++.|||+||..||.+||.. +...|||||..|...+-.
T Consensus 45 ~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv 100 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV 100 (230)
T ss_pred CCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE
Confidence 4568999999985544 56679999999999999987 335599999998876543
No 28
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=6.2e-09 Score=109.18 Aligned_cols=53 Identities=36% Similarity=0.854 Sum_probs=44.9
Q ss_pred CCcccccccccccCCCe--eEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521 154 TSRTCAICLEDYSVGEK--LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 207 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~--v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~ 207 (370)
.+..|+||+|++..+++ .+.|||+|+||..|+..|+++.++ ||+||..+....
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qt-CP~CR~~~~~~~ 344 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQT-CPTCRTVLYDYV 344 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCc-CCcchhhhhccc
Confidence 46899999999988755 689999999999999999999555 999999554443
No 29
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.86 E-value=1.8e-09 Score=73.18 Aligned_cols=39 Identities=36% Similarity=0.997 Sum_probs=33.1
Q ss_pred cccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccc
Q 017521 158 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 199 (370)
Q Consensus 158 C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~C 199 (370)
|+||++.+.+ .+..++|||.|+..||.+|++. +..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 8999999775 5688999999999999999999 5679998
No 30
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.6e-09 Score=102.42 Aligned_cols=49 Identities=33% Similarity=0.771 Sum_probs=42.2
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 207 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~ 207 (370)
...|.+|||..... -.+||||+||..||-.|...+. .||+||....+.+
T Consensus 239 ~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~-eCPlCR~~~~psk 287 (293)
T KOG0317|consen 239 TRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKA-ECPLCREKFQPSK 287 (293)
T ss_pred CCceEEEecCCCCC---CcCcCcchHHHHHHHHHHcccc-CCCcccccCCCcc
Confidence 47899999998665 6889999999999999999855 4999999877654
No 31
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.85 E-value=1.9e-09 Score=77.12 Aligned_cols=47 Identities=30% Similarity=0.817 Sum_probs=38.1
Q ss_pred CcccccccccccCCCeeEEeCCCCc-ccHhHHHHHHhcCCCCCccccccccc
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART 205 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 205 (370)
+..|.||++.... +..+||||. |+..|+..|+.. +..||+||++|..
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-SE
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhcC
Confidence 3689999998653 688899999 999999999996 4459999998853
No 32
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=98.82 E-value=3.2e-09 Score=91.55 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=58.3
Q ss_pred CCceEEEEEcCCC------ChHHH-------HHHHHHcCCcEEEEeccCCCc---ceeeccCC-CCCceeeEEEEecccc
Q 017521 1 MSSAFVLTIRGGC------SFEDK-------VRNAQKAGFEAAIVYDNEDDG---VLVAMAGN-SAGIKIHAVFVSKASG 63 (370)
Q Consensus 1 l~~~ivLV~RG~C------sF~~K-------v~nAq~aGA~avIVyn~~~~~---~~~~m~g~-~~~i~IpvVfIs~~~G 63 (370)
++||||||.||.| .|.+| +.+|+++||.|+|++|+.+.. ...++.+. .....||++.|+..+|
T Consensus 38 v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~ed~ 117 (134)
T cd04815 38 VKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISVEDA 117 (134)
T ss_pred cCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEechhcH
Confidence 5899999999999 99999 799999999999999965331 21233333 3345799999999999
Q ss_pred cccccccccc
Q 017521 64 EKLKQYAGST 73 (370)
Q Consensus 64 e~L~k~l~~~ 73 (370)
+.|.+.+...
T Consensus 118 ~~L~r~l~~g 127 (134)
T cd04815 118 DMLERLAARG 127 (134)
T ss_pred HHHHHHHhCC
Confidence 9998887753
No 33
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.2e-09 Score=95.01 Aligned_cols=52 Identities=25% Similarity=0.586 Sum_probs=42.1
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 207 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~ 207 (370)
....|+|||+.+.+... .-+.|||+||..||+.-++..++ ||+||..|....
T Consensus 130 ~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~-CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNK-CPTCRKKITHKQ 181 (187)
T ss_pred cccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCC-CCCcccccchhh
Confidence 45789999999876422 33679999999999999998665 999999887653
No 34
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.80 E-value=5.6e-09 Score=88.29 Aligned_cols=69 Identities=28% Similarity=0.354 Sum_probs=57.3
Q ss_pred CCceEEEEEcCCC-ChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEecccccccccccccc
Q 017521 1 MSSAFVLTIRGGC-SFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGST 73 (370)
Q Consensus 1 l~~~ivLV~RG~C-sF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~l~~~ 73 (370)
++|||||++||.| .|.+|+++|+++||.|+|++|+..+.. .+... ...||+++|.+.+|+.|++++...
T Consensus 50 v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~--~~~~~--~~~iP~v~I~~~~g~~l~~y~~~~ 119 (126)
T cd02120 50 VKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGL--DVVAD--AHVLPAVHVDYEDGTAILSYINST 119 (126)
T ss_pred ccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCc--eeccc--ccccceEEECHHHHHHHHHHHHcC
Confidence 5799999999999 999999999999999999998776521 22211 346999999999999999988753
No 35
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.78 E-value=3.7e-09 Score=83.28 Aligned_cols=50 Identities=30% Similarity=0.822 Sum_probs=38.5
Q ss_pred CcccccccccccC--------CCe--eEEeCCCCcccHhHHHHHHhcC--CCCCcccccccc
Q 017521 155 SRTCAICLEDYSV--------GEK--LRILPCRHKFHAFCVDSWLTSW--RTFCPVCKRDAR 204 (370)
Q Consensus 155 ~~~C~ICLe~~~~--------~~~--v~~lpC~H~FH~~Ci~~Wl~~~--~~~CP~CR~~i~ 204 (370)
++.|.||+..|+. ||. +..-.|+|.||..||.+||.+. +..||+||+...
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 5789999998873 333 3333499999999999999963 456999998653
No 36
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=98.78 E-value=3.7e-09 Score=91.71 Aligned_cols=70 Identities=30% Similarity=0.384 Sum_probs=57.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCc----ceeeccCCC--CCceeeEEEEecccccccccccc
Q 017521 2 SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDG----VLVAMAGNS--AGIKIHAVFVSKASGEKLKQYAG 71 (370)
Q Consensus 2 ~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~----~~~~m~g~~--~~i~IpvVfIs~~~Ge~L~k~l~ 71 (370)
.|.|+||+||+|+|..|.++++++||.++||-|+..+. ..+.|..|. ...+||++|+...+|-.++..+.
T Consensus 87 ~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~~Gy~ir~sL~ 162 (193)
T KOG3920|consen 87 PDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGVTGYYIRVSLK 162 (193)
T ss_pred CCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEeccceEEEehhHH
Confidence 57899999999999999999999999999998875432 256777654 35789999999999977665443
No 37
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.71 E-value=9.9e-09 Score=71.47 Aligned_cols=44 Identities=32% Similarity=0.831 Sum_probs=37.6
Q ss_pred ccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccc
Q 017521 157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 201 (370)
Q Consensus 157 ~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~ 201 (370)
.|.||+++|...+..++|+|||+|+..|++.+... ...||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~-~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGK-SVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCC-CCCCcCCCC
Confidence 49999999966677899999999999999998833 456999985
No 38
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.68 E-value=1.5e-08 Score=66.75 Aligned_cols=39 Identities=44% Similarity=1.125 Sum_probs=32.9
Q ss_pred cccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccc
Q 017521 158 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 199 (370)
Q Consensus 158 C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~C 199 (370)
|+||++.. +....++|+|.||..|++.|+...+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999983 4568889999999999999998545569987
No 39
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.68 E-value=1.1e-08 Score=69.80 Aligned_cols=40 Identities=43% Similarity=1.035 Sum_probs=34.3
Q ss_pred cccccccccCCCeeEEeCCCCcccHhHHHHHHh-cCCCCCccc
Q 017521 158 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT-SWRTFCPVC 199 (370)
Q Consensus 158 C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~-~~~~~CP~C 199 (370)
|+||++.+... ++.++|+|.|+..||.+|++ .....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998754 46889999999999999999 445669998
No 40
>PHA02926 zinc finger-like protein; Provisional
Probab=98.65 E-value=1.6e-08 Score=92.69 Aligned_cols=52 Identities=29% Similarity=0.773 Sum_probs=38.5
Q ss_pred CCcccccccccccCC----C-eeEEe-CCCCcccHhHHHHHHhcCC-----CCCccccccccc
Q 017521 154 TSRTCAICLEDYSVG----E-KLRIL-PCRHKFHAFCVDSWLTSWR-----TFCPVCKRDART 205 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~----~-~v~~l-pC~H~FH~~Ci~~Wl~~~~-----~~CP~CR~~i~~ 205 (370)
.+.+|.||||..-.+ + ...+| +|+|.||..||+.|...++ ..||+||....-
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 457999999986322 1 23455 5999999999999998632 349999987654
No 41
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.64 E-value=2e-08 Score=69.34 Aligned_cols=39 Identities=33% Similarity=0.774 Sum_probs=30.2
Q ss_pred cccccccccCCCeeEEeCCCCcccHhHHHHHHhcCC---CCCccc
Q 017521 158 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWR---TFCPVC 199 (370)
Q Consensus 158 C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~---~~CP~C 199 (370)
|+||++-|++. ..|+|||.|+..||..|.+..+ ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999876 7799999999999999998743 259987
No 42
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.63 E-value=2.6e-08 Score=90.02 Aligned_cols=36 Identities=33% Similarity=0.541 Sum_probs=34.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccC
Q 017521 1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNE 36 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~ 36 (370)
++||||||+||+|.|.+|+++|+++||+|||||++.
T Consensus 54 v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp 89 (183)
T cd02128 54 VNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDP 89 (183)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCH
Confidence 579999999999999999999999999999999874
No 43
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.2e-07 Score=95.26 Aligned_cols=51 Identities=27% Similarity=0.860 Sum_probs=40.1
Q ss_pred CcccccccccccCC---Ce-----------eEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521 155 SRTCAICLEDYSVG---EK-----------LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 205 (370)
Q Consensus 155 ~~~C~ICLe~~~~~---~~-----------v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 205 (370)
..+|+||+.++..- .. -..+||.|+||..|+.+|+...+-.||+||.++++
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 47899999986531 11 23569999999999999999766569999998764
No 44
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.49 E-value=1.3e-07 Score=70.30 Aligned_cols=46 Identities=26% Similarity=0.402 Sum_probs=39.4
Q ss_pred cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521 156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 205 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 205 (370)
..|+||++.+++. .+++|||+|+..||..|+.. +..||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCCh
Confidence 4699999998875 56799999999999999988 4469999987744
No 45
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=5.5e-08 Score=74.39 Aligned_cols=50 Identities=32% Similarity=0.838 Sum_probs=38.1
Q ss_pred CCcccccccccccC--------CCeeEEe--CCCCcccHhHHHHHHhc--CCCCCccccccc
Q 017521 154 TSRTCAICLEDYSV--------GEKLRIL--PCRHKFHAFCVDSWLTS--WRTFCPVCKRDA 203 (370)
Q Consensus 154 ~~~~C~ICLe~~~~--------~~~v~~l--pC~H~FH~~Ci~~Wl~~--~~~~CP~CR~~i 203 (370)
.++.|-||+..|.. +|.+-.+ .|.|.||..||.+|+.. .+..||+||+..
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 45689999999864 3433322 29999999999999986 345699999864
No 46
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.40 E-value=2e-07 Score=71.97 Aligned_cols=47 Identities=26% Similarity=0.737 Sum_probs=33.2
Q ss_pred cccccccccCCCeeEEe--CCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521 158 CAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWLTSWRTFCPVCKRDART 205 (370)
Q Consensus 158 C~ICLe~~~~~~~v~~l--pC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 205 (370)
|+-|...+..++++.+. .|+|.||..||.+||.. +..||+||+.-.-
T Consensus 34 C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~~ 82 (88)
T COG5194 34 CPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWVL 82 (88)
T ss_pred CcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeEE
Confidence 33333334455655443 39999999999999999 4559999986543
No 47
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.4e-07 Score=88.47 Aligned_cols=55 Identities=29% Similarity=0.733 Sum_probs=43.3
Q ss_pred cCCCcccccccccccCCC-------eeEEeCCCCcccHhHHHHHHhc-CCCCCcccccccccC
Q 017521 152 NCTSRTCAICLEDYSVGE-------KLRILPCRHKFHAFCVDSWLTS-WRTFCPVCKRDARTS 206 (370)
Q Consensus 152 ~~~~~~C~ICLe~~~~~~-------~v~~lpC~H~FH~~Ci~~Wl~~-~~~~CP~CR~~i~~~ 206 (370)
..++..|+||-..+...+ +...|.|+|+||..||+.|-.. ++.+||.|+..+.-+
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 345789999998886543 6788999999999999999543 344599999877543
No 48
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.34 E-value=2.9e-07 Score=92.30 Aligned_cols=49 Identities=31% Similarity=0.763 Sum_probs=41.2
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 206 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 206 (370)
....|+||++.|... .+++|+|.||..||..|+... ..||+||..+...
T Consensus 25 ~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~-~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 25 TSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQ-PKCPLCRAEDQES 73 (397)
T ss_pred cccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCC-CCCCCCCCccccc
Confidence 357999999998754 468999999999999999874 4699999987654
No 49
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.33 E-value=3.2e-07 Score=63.61 Aligned_cols=39 Identities=38% Similarity=0.780 Sum_probs=22.7
Q ss_pred cccccccccCCC-eeEEeCCCCcccHhHHHHHHhcC---CCCCc
Q 017521 158 CAICLEDYSVGE-KLRILPCRHKFHAFCVDSWLTSW---RTFCP 197 (370)
Q Consensus 158 C~ICLe~~~~~~-~v~~lpC~H~FH~~Ci~~Wl~~~---~~~CP 197 (370)
|+||+| |...+ .-++|+|||+|+.+||++|+... ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 85543 44789999999999999999863 33476
No 50
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.31 E-value=5.1e-07 Score=64.43 Aligned_cols=43 Identities=28% Similarity=0.770 Sum_probs=33.4
Q ss_pred ccccccccccCCCeeEEeCCC-----CcccHhHHHHHHhcC-CCCCcccc
Q 017521 157 TCAICLEDYSVGEKLRILPCR-----HKFHAFCVDSWLTSW-RTFCPVCK 200 (370)
Q Consensus 157 ~C~ICLe~~~~~~~v~~lpC~-----H~FH~~Ci~~Wl~~~-~~~CP~CR 200 (370)
.|.||++.. .++...++||. |.+|..|+++|+... +..||+|+
T Consensus 1 ~CrIC~~~~-~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEG-DEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCC-CCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 499999943 34455688984 889999999999764 45699995
No 51
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=4.5e-07 Score=85.07 Aligned_cols=50 Identities=30% Similarity=0.723 Sum_probs=41.5
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHhHHHH-HHhcCCCCCcccccccccCC
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDS-WLTSWRTFCPVCKRDARTST 207 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~-Wl~~~~~~CP~CR~~i~~~~ 207 (370)
+..|+||+|..... ..++|||+||..||-. |-.++-.+||+||+.+.+++
T Consensus 215 d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 215 DYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 57899999997654 6789999999999999 97775556999999876653
No 52
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.18 E-value=6.9e-07 Score=89.09 Aligned_cols=48 Identities=31% Similarity=0.794 Sum_probs=38.4
Q ss_pred CCcccccccccccCC-CeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521 154 TSRTCAICLEDYSVG-EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 204 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~-~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~ 204 (370)
+..+|+||||.+... ..++...|.|.||..|+..|- ..+||+||.-..
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~---~~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW---DSSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcc---cCcChhhhhhcC
Confidence 357999999999765 345666699999999999994 446999998544
No 53
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.09 E-value=4.5e-06 Score=72.65 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=35.0
Q ss_pred CCceEEEEEcCCC------------------ChHHHHHHHHHcCCcEEEEeccCCC
Q 017521 1 MSSAFVLTIRGGC------------------SFEDKVRNAQKAGFEAAIVYDNEDD 38 (370)
Q Consensus 1 l~~~ivLV~RG~C------------------sF~~Kv~nAq~aGA~avIVyn~~~~ 38 (370)
++||||||.||+| +|..|+++|+++||+|||++++.+.
T Consensus 46 VkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~~ 101 (142)
T cd04814 46 VKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELAP 101 (142)
T ss_pred CCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCCc
Confidence 5899999999999 6899999999999999999998653
No 54
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.3e-06 Score=70.78 Aligned_cols=49 Identities=29% Similarity=0.771 Sum_probs=35.4
Q ss_pred CCCccccccccccc------------CCCeeEEe--CCCCcccHhHHHHHHhcCCCCCcccccc
Q 017521 153 CTSRTCAICLEDYS------------VGEKLRIL--PCRHKFHAFCVDSWLTSWRTFCPVCKRD 202 (370)
Q Consensus 153 ~~~~~C~ICLe~~~------------~~~~v~~l--pC~H~FH~~Ci~~Wl~~~~~~CP~CR~~ 202 (370)
...+.|+||+..+- ..+++.+. -|+|.||..||.+||++++. ||+|.++
T Consensus 44 i~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~v-CPLdn~e 106 (114)
T KOG2930|consen 44 IVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNV-CPLDNKE 106 (114)
T ss_pred eeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCc-CCCcCcc
Confidence 34568999876532 12334333 39999999999999999665 9999764
No 55
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.06 E-value=2e-06 Score=66.44 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=38.1
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 206 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 206 (370)
...|+||.+-|.+. .++||||.|...||..||.++...||+|+..+...
T Consensus 4 ~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 4 EFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred ccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 46899999999876 67899999999999999999666799999887764
No 56
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.3e-06 Score=86.90 Aligned_cols=56 Identities=27% Similarity=0.465 Sum_probs=41.6
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC----CCCCcccccccccCCCCCCCC
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW----RTFCPVCKRDARTSTGEPPAS 213 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~----~~~CP~CR~~i~~~~~~~~~~ 213 (370)
+..|+|||+..... ..+.|||+||..||-+.+... -..||+||..|......+...
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 57899999997654 334499999999998876542 234999999888855544433
No 57
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.03 E-value=1.1e-06 Score=93.85 Aligned_cols=53 Identities=30% Similarity=0.767 Sum_probs=39.2
Q ss_pred cCCCcccccccccccCCCe----eEEeCCCCcccHhHHHHHHhc-CCCCCcccccccc
Q 017521 152 NCTSRTCAICLEDYSVGEK----LRILPCRHKFHAFCVDSWLTS-WRTFCPVCKRDAR 204 (370)
Q Consensus 152 ~~~~~~C~ICLe~~~~~~~----v~~lpC~H~FH~~Ci~~Wl~~-~~~~CP~CR~~i~ 204 (370)
-.+.++|+||..-...-|. -|+-.|.|.||..|+.+|+.. .+.+||+||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3456899999887652220 123338999999999999997 4567999998765
No 58
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.01 E-value=5.7e-06 Score=80.19 Aligned_cols=54 Identities=24% Similarity=0.469 Sum_probs=39.9
Q ss_pred CCcccccccccc-cCCC-eeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521 154 TSRTCAICLEDY-SVGE-KLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 207 (370)
Q Consensus 154 ~~~~C~ICLe~~-~~~~-~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~ 207 (370)
++..|+||+.+- -..+ ++.+.+|||.||..||+..+......||.|+..+....
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 346899999973 2322 23333799999999999977665566999998877654
No 59
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.00 E-value=8.8e-06 Score=71.61 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=34.5
Q ss_pred CCceEEEEEcCC------------------CChHHHHHHHHHcCCcEEEEeccCCC
Q 017521 1 MSSAFVLTIRGG------------------CSFEDKVRNAQKAGFEAAIVYDNEDD 38 (370)
Q Consensus 1 l~~~ivLV~RG~------------------CsF~~Kv~nAq~aGA~avIVyn~~~~ 38 (370)
++||||||.||+ |+|.+|+++|+++||+|||||++...
T Consensus 46 VkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~ 101 (151)
T cd04822 46 VKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNS 101 (151)
T ss_pred CCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 589999999985 99999999999999999999987544
No 60
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=5e-06 Score=81.25 Aligned_cols=51 Identities=27% Similarity=0.638 Sum_probs=41.0
Q ss_pred CCcccccccccccCCCeeEEeCCCCc-ccHhHHHHHHhcCCCCCcccccccccCCC
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDARTSTG 208 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~ 208 (370)
...+|.|||.+-++ +.+|||.|. .|..|.+...-+++ .||+||+++.+...
T Consensus 289 ~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q~n-~CPICRqpi~~ll~ 340 (349)
T KOG4265|consen 289 SGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQTN-NCPICRQPIEELLE 340 (349)
T ss_pred CCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHhhc-CCCccccchHhhhe
Confidence 46899999998654 589999999 89999998655544 49999999876543
No 61
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=97.96 E-value=1.2e-05 Score=69.57 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=34.4
Q ss_pred CCceEEEEEcCCCC------------hHHHHHHHHHcCCcEEEEeccCCC
Q 017521 1 MSSAFVLTIRGGCS------------FEDKVRNAQKAGFEAAIVYDNEDD 38 (370)
Q Consensus 1 l~~~ivLV~RG~Cs------------F~~Kv~nAq~aGA~avIVyn~~~~ 38 (370)
++||||||++|.|. +.+|+++|+++||+|||+|++...
T Consensus 48 VkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 48 VKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred CCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 58999999999995 889999999999999999987544
No 62
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.92 E-value=1.3e-05 Score=70.11 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=34.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCC
Q 017521 1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNED 37 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~ 37 (370)
++|||||++.|+....+|++|||++||.|||||.|-.
T Consensus 39 v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 39 VTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred ccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 6899999999999999999999999999999998743
No 63
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=97.92 E-value=1.3e-05 Score=74.78 Aligned_cols=36 Identities=33% Similarity=0.420 Sum_probs=34.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccC
Q 017521 1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNE 36 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~ 36 (370)
++||||||++|+|.+.+|+++|+++||+|||||++.
T Consensus 70 v~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp 105 (220)
T cd02121 70 VKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDP 105 (220)
T ss_pred CCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCc
Confidence 589999999999999999999999999999999874
No 64
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.86 E-value=6.5e-06 Score=78.15 Aligned_cols=47 Identities=32% Similarity=0.735 Sum_probs=39.8
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 205 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 205 (370)
...|-||-+.|... .+++|||.||.-||...|.. +.+||+||.+-.+
T Consensus 25 ~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~e 71 (391)
T COG5432 25 MLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCE 71 (391)
T ss_pred HHHhhhhhheeecc---eecccccchhHHHHHHHhcC-CCCCccccccHHh
Confidence 46899999998876 67789999999999999998 5569999986444
No 65
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.85 E-value=3.6e-06 Score=64.57 Aligned_cols=50 Identities=26% Similarity=0.633 Sum_probs=23.8
Q ss_pred cccccccccccCCCeeEEe-----CCCCcccHhHHHHHHhc----CC------CCCccccccccc
Q 017521 156 RTCAICLEDYSVGEKLRIL-----PCRHKFHAFCVDSWLTS----WR------TFCPVCKRDART 205 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v~~l-----pC~H~FH~~Ci~~Wl~~----~~------~~CP~CR~~i~~ 205 (370)
.+|.||.+.+..++++..+ .|+..||..||.+||.. ++ ..||.|+.+|.-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 5799999987633322111 38999999999999975 11 139999988753
No 66
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=7.2e-06 Score=77.07 Aligned_cols=43 Identities=37% Similarity=0.799 Sum_probs=38.1
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccc
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 200 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR 200 (370)
+...|+||++.|... +++||+|.|+..|+..|.. ....||.||
T Consensus 12 ~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREP---VLLPCGHNFCRACLTRSWE-GPLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhcC---ccccccchHhHHHHHHhcC-CCcCCcccC
Confidence 457899999999887 8899999999999999987 455699999
No 67
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.73 E-value=1.2e-05 Score=77.76 Aligned_cols=49 Identities=31% Similarity=0.800 Sum_probs=42.3
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 207 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~ 207 (370)
...|-||.|-|... .++||+|.||.-||...|.. +..||.|+..+.+..
T Consensus 23 lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 23 LLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESD 71 (442)
T ss_pred HHHHhHHHHHhcCc---eeccccchHHHHHHHHHhcc-CCCCCceecccchhh
Confidence 46899999999876 67899999999999999987 566999998877654
No 68
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=1.6e-05 Score=78.26 Aligned_cols=48 Identities=29% Similarity=0.713 Sum_probs=35.1
Q ss_pred cccccccccccC-CCeeEEeC-CCCcccHhHHHHHHhcCC--CCCcccccccc
Q 017521 156 RTCAICLEDYSV-GEKLRILP-CRHKFHAFCVDSWLTSWR--TFCPVCKRDAR 204 (370)
Q Consensus 156 ~~C~ICLe~~~~-~~~v~~lp-C~H~FH~~Ci~~Wl~~~~--~~CP~CR~~i~ 204 (370)
..|.|| +++.+ .+.+.-.. |||+||..|+.+|+.... ..||+||-.+.
T Consensus 5 A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 5 AECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred ceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 579999 55544 44555444 999999999999999732 25999984433
No 69
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.69 E-value=1.7e-05 Score=75.73 Aligned_cols=55 Identities=24% Similarity=0.685 Sum_probs=44.3
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHhHHHHHH------------------hc----CCCCCcccccccccCCC
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWL------------------TS----WRTFCPVCKRDARTSTG 208 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl------------------~~----~~~~CP~CR~~i~~~~~ 208 (370)
...+|+|||.-|..++.+.+++|.|.||..|+...| +. .+..||+||..|-....
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~ 190 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN 190 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence 357899999999999999999999999999987544 32 12349999998766543
No 70
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=2.1e-05 Score=75.26 Aligned_cols=54 Identities=24% Similarity=0.504 Sum_probs=43.6
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCCCCCC
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPP 211 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~~~ 211 (370)
..+|+||+....-. ..|+|+|.|+.-||+.-....+.+|++||.+|.+.....+
T Consensus 7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~p 60 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEP 60 (324)
T ss_pred CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcch
Confidence 36899999987654 6788999999999997666656669999999988765444
No 71
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=4.1e-05 Score=75.84 Aligned_cols=47 Identities=36% Similarity=0.993 Sum_probs=36.6
Q ss_pred CcccccccccccC-CC-eeEEeCCCCcccHhHHHHHHhc-CCCCCccccc
Q 017521 155 SRTCAICLEDYSV-GE-KLRILPCRHKFHAFCVDSWLTS-WRTFCPVCKR 201 (370)
Q Consensus 155 ~~~C~ICLe~~~~-~~-~v~~lpC~H~FH~~Ci~~Wl~~-~~~~CP~CR~ 201 (370)
..+|+|||+.+.. ++ .+..|.|+|.|..+||+.||.+ ....||.|..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ 53 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSG 53 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCC
Confidence 5799999999854 34 4455559999999999999964 2345999954
No 72
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=6.3e-05 Score=74.31 Aligned_cols=52 Identities=29% Similarity=0.809 Sum_probs=38.7
Q ss_pred CCcccccccccccCCC----eeEEeC-CCCcccHhHHHHHHhcCC------CCCccccccccc
Q 017521 154 TSRTCAICLEDYSVGE----KLRILP-CRHKFHAFCVDSWLTSWR------TFCPVCKRDART 205 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~----~v~~lp-C~H~FH~~Ci~~Wl~~~~------~~CP~CR~~i~~ 205 (370)
.+..|.||+|...+.. ...+|| |.|.|+..||+.|-...+ ..||.||....-
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 3578999999975432 134556 999999999999984433 459999986443
No 73
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.34 E-value=4.2e-05 Score=80.87 Aligned_cols=47 Identities=28% Similarity=0.502 Sum_probs=40.4
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccc
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 202 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~ 202 (370)
...|++||..+.++...-.-+|+|.||..||+.|-...++ ||+||..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqT-CPiDR~E 169 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQT-CPVDRGE 169 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhccc-Cchhhhh
Confidence 4689999999988766666679999999999999888666 9999874
No 74
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=5.2e-05 Score=73.99 Aligned_cols=55 Identities=24% Similarity=0.414 Sum_probs=43.1
Q ss_pred CCcccccccccccCCCeeEEeC-CCCcccHhHHHHHHhcCCCCCcccccccccCCCCCC
Q 017521 154 TSRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPP 211 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lp-C~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~~~ 211 (370)
.+..|.|||+-++.. +.++ |.|-||.+||..-+......||.||+.+-.......
T Consensus 42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~ 97 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRI 97 (381)
T ss_pred hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCC
Confidence 357999999988754 3444 999999999999998866679999997766554433
No 75
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=6.6e-05 Score=54.05 Aligned_cols=48 Identities=23% Similarity=0.528 Sum_probs=32.5
Q ss_pred CcccccccccccCCCeeEEeCCCCc-ccHhHHHHHHhcCCCCCccccccccc
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART 205 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 205 (370)
+.+|.||+|.-.+. ..-.|||+ .+.+|-.+-++..+..||+||++|.+
T Consensus 7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 37899999985432 22349999 66667544333345669999998754
No 76
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.08 E-value=0.00028 Score=69.73 Aligned_cols=47 Identities=34% Similarity=0.814 Sum_probs=38.8
Q ss_pred CcccccccccccC-CCeeEEeCCCCcccHhHHHHHHhcC-CCCCccccc
Q 017521 155 SRTCAICLEDYSV-GEKLRILPCRHKFHAFCVDSWLTSW-RTFCPVCKR 201 (370)
Q Consensus 155 ~~~C~ICLe~~~~-~~~v~~lpC~H~FH~~Ci~~Wl~~~-~~~CP~CR~ 201 (370)
+.-|..|-|.+.. ++.+.-|||.|+||..|+.+.|.++ ..+||.||.
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3579999999854 4678999999999999999999873 235999984
No 77
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.05 E-value=0.00016 Score=54.02 Aligned_cols=47 Identities=28% Similarity=0.619 Sum_probs=24.0
Q ss_pred cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521 156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 207 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~ 207 (370)
..|.+|.+-+++. |-...|.|+|+..||..-+.. .||+|+.+...++
T Consensus 8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD 54 (65)
T PF14835_consen 8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQD 54 (65)
T ss_dssp TS-SSS-S--SS---B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS
T ss_pred cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHH
Confidence 5799999987754 555669999999999885543 4999998776554
No 78
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.98 E-value=0.0003 Score=69.60 Aligned_cols=50 Identities=28% Similarity=0.755 Sum_probs=40.0
Q ss_pred cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC-CCCCcccccccccCCC
Q 017521 156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-RTFCPVCKRDARTSTG 208 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~-~~~CP~CR~~i~~~~~ 208 (370)
..|-||-|. +..|++-||||..|..|+..|-... ...||.||.+|-....
T Consensus 370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 579999886 3458899999999999999998552 2349999998765543
No 79
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.00025 Score=75.43 Aligned_cols=47 Identities=23% Similarity=0.547 Sum_probs=38.3
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 204 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~ 204 (370)
-..|++|-+.+++. .++.|+|+||..||..-+..++..||.|-....
T Consensus 643 ~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred ceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 36899999887653 556699999999999999887777999976543
No 80
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00029 Score=61.77 Aligned_cols=41 Identities=34% Similarity=0.699 Sum_probs=32.0
Q ss_pred ceeeeeeeeeccCCCcccccccccccCCCeeEEeCCCCcccH
Q 017521 141 PSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHA 182 (370)
Q Consensus 141 p~~~~~~~~~~~~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~ 182 (370)
|++.|+++.-. .+..+|.||||+++.+|.+..|||-.+||+
T Consensus 164 PrlsYNdDVL~-ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 164 PRLSYNDDVLK-DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cccccccchhc-ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 45555543222 235799999999999999999999999996
No 81
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.84 E-value=0.00058 Score=50.25 Aligned_cols=42 Identities=24% Similarity=0.505 Sum_probs=29.5
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc-CCCCCcc
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS-WRTFCPV 198 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~-~~~~CP~ 198 (370)
...|+|.+..|++ .|+-..|+|+|-+..|.+||.. ....||+
T Consensus 11 ~~~CPiT~~~~~~--PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFED--PVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SS--EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhC--CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 4789999999874 5888889999999999999944 3455998
No 82
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.68 E-value=0.001 Score=74.33 Aligned_cols=56 Identities=25% Similarity=0.510 Sum_probs=43.3
Q ss_pred cCCCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC---------CCCCcccccccccCC
Q 017521 152 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW---------RTFCPVCKRDARTST 207 (370)
Q Consensus 152 ~~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~---------~~~CP~CR~~i~~~~ 207 (370)
...++.|.||..+--.....+.|.|+|+||..|...-|+.+ -..||+|+.+|+...
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHH
Confidence 34568999999886666678999999999999998655541 124999999887643
No 83
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.60 E-value=0.00084 Score=57.51 Aligned_cols=35 Identities=20% Similarity=0.484 Sum_probs=30.3
Q ss_pred CcccccccccccCCCeeEEeCCC------CcccHhHHHHHH
Q 017521 155 SRTCAICLEDYSVGEKLRILPCR------HKFHAFCVDSWL 189 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~------H~FH~~Ci~~Wl 189 (370)
..+|.||++.+..++.|+.++|+ |+||.+|+++|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 46899999999886678888884 899999999993
No 84
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.00031 Score=68.98 Aligned_cols=44 Identities=27% Similarity=0.677 Sum_probs=33.6
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 204 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~ 204 (370)
....|.||+++.++ ...+||||+-+ |...-.. ...||+||+.|.
T Consensus 304 ~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccc---eeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence 45789999999765 57889999955 7766433 345999998765
No 85
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0027 Score=58.59 Aligned_cols=53 Identities=25% Similarity=0.605 Sum_probs=42.5
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC-------CCCCcccccccccCCC
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-------RTFCPVCKRDARTSTG 208 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~-------~~~CP~CR~~i~~~~~ 208 (370)
...|..|-..+..+|.+| |-|-|+||.+|+++|-..- --.||.|-.+|.+...
T Consensus 50 ~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N 109 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN 109 (299)
T ss_pred CCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence 467999999999898766 5699999999999997651 1139999998887654
No 86
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.38 E-value=0.0024 Score=45.03 Aligned_cols=41 Identities=37% Similarity=0.869 Sum_probs=27.8
Q ss_pred cccccccccCCCeeEEeCCC-----CcccHhHHHHHHhc-CCCCCccc
Q 017521 158 CAICLEDYSVGEKLRILPCR-----HKFHAFCVDSWLTS-WRTFCPVC 199 (370)
Q Consensus 158 C~ICLe~~~~~~~v~~lpC~-----H~FH~~Ci~~Wl~~-~~~~CP~C 199 (370)
|-||+++-...+ ..+.||+ -..|..|++.|+.. .+..|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 789999977665 4457863 36899999999986 34559987
No 87
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.35 E-value=0.0018 Score=65.65 Aligned_cols=54 Identities=26% Similarity=0.606 Sum_probs=43.0
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCCCCC
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEP 210 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~~ 210 (370)
.+..|++|...+.+. +..+.|||.|+..|+..|+..++ .||.|+..+......+
T Consensus 20 ~~l~C~~C~~vl~~p--~~~~~cgh~fC~~C~~~~~~~~~-~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDP--VQTTTCGHRFCAGCLLESLSNHQ-KCPVCRQELTQAEELP 73 (391)
T ss_pred ccccCccccccccCC--CCCCCCCCcccccccchhhccCc-CCcccccccchhhccC
Confidence 457899999998765 33357999999999999999944 5999988777655444
No 88
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0021 Score=64.92 Aligned_cols=49 Identities=27% Similarity=0.626 Sum_probs=40.8
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521 153 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 205 (370)
Q Consensus 153 ~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 205 (370)
..+..|.||+.-+... ..+||||.|+..||++-+.+ .+.||.||..+.+
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhcc-CCCCccccccccc
Confidence 3468999998887665 67799999999999997775 5569999998876
No 89
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0032 Score=62.89 Aligned_cols=38 Identities=29% Similarity=0.690 Sum_probs=33.6
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS 191 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~ 191 (370)
....|.||+++....+-+..|||+|+|++.|+...+..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~ 220 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTI 220 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHH
Confidence 45799999999877788899999999999999998764
No 90
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.95 E-value=0.0038 Score=44.20 Aligned_cols=45 Identities=24% Similarity=0.630 Sum_probs=21.6
Q ss_pred cccccccccCCCeeEEeC--CCCcccHhHHHHHHhcCCCCCccccccc
Q 017521 158 CAICLEDYSVGEKLRILP--CRHKFHAFCVDSWLTSWRTFCPVCKRDA 203 (370)
Q Consensus 158 C~ICLe~~~~~~~v~~lp--C~H~FH~~Ci~~Wl~~~~~~CP~CR~~i 203 (370)
|++|.+++...+ ...+| |++..+..|...-++.....||-||++.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999994432 34556 7888888888776654456699999864
No 91
>PHA02862 5L protein; Provisional
Probab=95.93 E-value=0.0053 Score=53.11 Aligned_cols=48 Identities=25% Similarity=0.539 Sum_probs=35.6
Q ss_pred CcccccccccccCCCeeEEeCCC-----CcccHhHHHHHHhc-CCCCCcccccccccC
Q 017521 155 SRTCAICLEDYSVGEKLRILPCR-----HKFHAFCVDSWLTS-WRTFCPVCKRDARTS 206 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~-----H~FH~~Ci~~Wl~~-~~~~CP~CR~~i~~~ 206 (370)
+..|-||+++-+ +. .-||. ..-|..|+.+|++. ++..|++|+.+..-.
T Consensus 2 ~diCWIC~~~~~--e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCD--ER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCC--CC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 368999999843 33 35763 46899999999986 446699998866543
No 92
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.74 E-value=0.0089 Score=52.63 Aligned_cols=50 Identities=20% Similarity=0.609 Sum_probs=36.2
Q ss_pred CCcccccccccccCCCeeEEeCCC--C---cccHhHHHHHHhcC-CCCCcccccccccCC
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCR--H---KFHAFCVDSWLTSW-RTFCPVCKRDARTST 207 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~--H---~FH~~Ci~~Wl~~~-~~~CP~CR~~i~~~~ 207 (370)
.+..|-||.++.. +. .-||. . .-|..|++.|+... ...|++|+.+..-..
T Consensus 7 ~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~ 62 (162)
T PHA02825 7 MDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK 62 (162)
T ss_pred CCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence 3578999998843 22 35764 3 56999999999873 456999988765543
No 93
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.69 E-value=0.0046 Score=50.36 Aligned_cols=31 Identities=26% Similarity=0.708 Sum_probs=27.1
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHhHHH
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVD 186 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~ 186 (370)
...|++|-..+.. ..+.+.||||+||..|++
T Consensus 78 ~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 4689999999977 578889999999999975
No 94
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.62 E-value=0.0049 Score=63.23 Aligned_cols=53 Identities=25% Similarity=0.582 Sum_probs=40.2
Q ss_pred ccCCCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc----CCCCCcccccccccC
Q 017521 151 DNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS----WRTFCPVCKRDARTS 206 (370)
Q Consensus 151 ~~~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~----~~~~CP~CR~~i~~~ 206 (370)
++.+...|-+|-+.-++ -.+..|.|.||+.||..++.. .+.+||+|...+.-.
T Consensus 532 enk~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cccCceeecccCChhhh---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 44566899999887443 356779999999999887654 456799997766554
No 95
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.49 E-value=0.017 Score=51.17 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=30.7
Q ss_pred CCceEEEEEcCCCChH-------------------HHHHHHHHcCCcEEEEeccCC
Q 017521 1 MSSAFVLTIRGGCSFE-------------------DKVRNAQKAGFEAAIVYDNED 37 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~-------------------~Kv~nAq~aGA~avIVyn~~~ 37 (370)
++||||+|.+|+=.|. .|...|+++||+|||+.++..
T Consensus 48 VkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 48 VKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 6899999998865443 499999999999999997643
No 96
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=0.02 Score=53.78 Aligned_cols=53 Identities=13% Similarity=0.205 Sum_probs=44.5
Q ss_pred CcccccccccccCCCeeEEeC-CCCcccHhHHHHHHhcCCCCCcccccccccCCC
Q 017521 155 SRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG 208 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lp-C~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~ 208 (370)
...|+||.+.+.+...+.+|. |||+|..+|+++.+.... .||+|-.++.+...
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~-v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM-VDPVTDKPLKDRDI 274 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc-cccCCCCcCcccce
Confidence 478999999999988888885 999999999999877744 59999887766543
No 97
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.0014 Score=64.76 Aligned_cols=52 Identities=23% Similarity=0.547 Sum_probs=44.7
Q ss_pred CcccccccccccCC-CeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521 155 SRTCAICLEDYSVG-EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 207 (370)
Q Consensus 155 ~~~C~ICLe~~~~~-~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~ 207 (370)
...|+||.+.++.. +++..+-|||++|..||.+||... ..||.||+.+....
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~-~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATK-RKLPSCRRELPKNG 248 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH-HHhHHHHhhhhhhh
Confidence 36899999999877 788888899999999999999984 45999999876544
No 98
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.96 E-value=0.0092 Score=54.22 Aligned_cols=45 Identities=27% Similarity=0.593 Sum_probs=36.7
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccc
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 203 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i 203 (370)
...|.||-++|+.. +++.|||.||..|...-++... .|-+|-...
T Consensus 196 PF~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~-~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGD-ECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccch---hhhhcchhHHHHHHHHHhccCC-cceecchhh
Confidence 36899999999876 5677999999999988777644 599996643
No 99
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.96 E-value=0.014 Score=56.05 Aligned_cols=43 Identities=28% Similarity=0.627 Sum_probs=33.9
Q ss_pred cccccccccccCCCeeEEeC-CCCcccHhHHHHHHhcCCCCCccccc
Q 017521 156 RTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKR 201 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v~~lp-C~H~FH~~Ci~~Wl~~~~~~CP~CR~ 201 (370)
..|+.|-.-.... ++ +| |+|.|+..||..-|......||.|.+
T Consensus 275 LkCplc~~Llrnp--~k-T~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP--MK-TPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc--cc-CccccchHHHHHHhhhhhhccccCCCccc
Confidence 5799987776554 33 35 89999999999988876777999954
No 100
>PHA03096 p28-like protein; Provisional
Probab=94.92 E-value=0.013 Score=56.87 Aligned_cols=46 Identities=33% Similarity=0.767 Sum_probs=33.3
Q ss_pred cccccccccccCC----CeeEEeC-CCCcccHhHHHHHHhcC--CCCCccccc
Q 017521 156 RTCAICLEDYSVG----EKLRILP-CRHKFHAFCVDSWLTSW--RTFCPVCKR 201 (370)
Q Consensus 156 ~~C~ICLe~~~~~----~~v~~lp-C~H~FH~~Ci~~Wl~~~--~~~CP~CR~ 201 (370)
..|.||+|..... ..-..|+ |.|.|+..|+..|.... ...||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 6899999987543 2345677 99999999999998752 223555543
No 101
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.02 Score=55.53 Aligned_cols=48 Identities=35% Similarity=0.802 Sum_probs=40.4
Q ss_pred cccccccccccCCCe---eEEeCCCCcccHhHHHHHHhcCCCCCccccccc
Q 017521 156 RTCAICLEDYSVGEK---LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 203 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~---v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i 203 (370)
..|-||-++|..++. -++|.|||.|+..|+..-+......||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 579999999987642 377889999999999998887666799999875
No 102
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.59 E-value=0.019 Score=53.80 Aligned_cols=50 Identities=26% Similarity=0.566 Sum_probs=37.5
Q ss_pred cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCCCC
Q 017521 156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 209 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~ 209 (370)
..|..|...-. ++...++.|.|+||..|...-. ...||+||..|......
T Consensus 4 VhCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~ 53 (233)
T KOG4739|consen 4 VHCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLN 53 (233)
T ss_pred EEeccccccCC-CCceeeeechhhhhhhhcccCC---ccccccccceeeeeecc
Confidence 35777765544 8889999999999999977632 22699999987665544
No 103
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.57 E-value=0.019 Score=62.05 Aligned_cols=47 Identities=30% Similarity=0.683 Sum_probs=35.7
Q ss_pred CCcccccccccccCCCee-EEeCCCCcccHhHHHHHHhcCC------CCCcccc
Q 017521 154 TSRTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLTSWR------TFCPVCK 200 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v-~~lpC~H~FH~~Ci~~Wl~~~~------~~CP~CR 200 (370)
+..+|.||+|.+...+.+ -.-.|-|+||..||..|-.+.. -.||.|.
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq 243 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ 243 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence 357999999999776544 3334899999999999976521 1399997
No 104
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.039 Score=52.64 Aligned_cols=50 Identities=20% Similarity=0.488 Sum_probs=37.4
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC-CCCCccccccccc
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-RTFCPVCKRDART 205 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~-~~~CP~CR~~i~~ 205 (370)
.+.+|++|-+.-..+ -...+|+|+||..||..=+.-. ..+||.|-.++..
T Consensus 238 ~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred CCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 468999999886554 4566799999999999865531 2459999766553
No 105
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.72 E-value=0.053 Score=53.22 Aligned_cols=60 Identities=23% Similarity=0.522 Sum_probs=40.9
Q ss_pred ccceeeeeeeeeccCCCcccccccccccCCCeeEEeCCCCcccHhHHHHH--HhcCCCCCcccccc
Q 017521 139 AMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSW--LTSWRTFCPVCKRD 202 (370)
Q Consensus 139 ~lp~~~~~~~~~~~~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~W--l~~~~~~CP~CR~~ 202 (370)
.-|.+.....++.+.+...|.||-+... .+.++||+|..|--|--.. |-. +..||+||..
T Consensus 45 aEPnlttsSaddtDEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~-~K~C~~CrTE 106 (493)
T COG5236 45 AEPNLTTSSADDTDEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYM-QKGCPLCRTE 106 (493)
T ss_pred cCCccccccccccccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHh-ccCCCccccc
Confidence 3455444444444556789999998864 4588999999888886543 222 3459999874
No 106
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.015 Score=55.74 Aligned_cols=42 Identities=29% Similarity=0.640 Sum_probs=30.5
Q ss_pred CcccccccccccCCCeeEEeCCCCc-ccHhHHHHHHhcCCCCCcccccccc
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDAR 204 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~ 204 (370)
...|+||++... .+..|+|||. -|..|-.. -..||+||+.|.
T Consensus 300 ~~LC~ICmDaP~---DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLECGHMVTCTKCGKR-----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc---ceEEeecCcEEeehhhccc-----cccCchHHHHHH
Confidence 468999998743 4789999998 45555333 235999998654
No 107
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=93.49 E-value=0.024 Score=55.36 Aligned_cols=51 Identities=24% Similarity=0.554 Sum_probs=40.0
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 207 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~ 207 (370)
...+|.+|-.-|.+.. .+.-|-|.||+.||...|.. ..+||+|...|....
T Consensus 14 ~~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTH 64 (331)
T ss_pred cceehhhccceeecch--hHHHHHHHHHHHHHHHHHHH-hccCCccceeccCcc
Confidence 3578999988776653 33459999999999999998 445999988776654
No 108
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.43 E-value=0.023 Score=61.45 Aligned_cols=41 Identities=22% Similarity=0.682 Sum_probs=31.3
Q ss_pred cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccc
Q 017521 156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 202 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~ 202 (370)
..|..|--.++.+ .+-.-|+|.||.+|++ .+...||-|+.+
T Consensus 841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e----~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE----DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCccccc--eeeeecccHHHHHhhc----cCcccCCccchh
Confidence 6899998877654 4445599999999998 234459999873
No 109
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.032 Score=53.65 Aligned_cols=46 Identities=22% Similarity=0.436 Sum_probs=37.5
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 204 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~ 204 (370)
...|-||.+.|... +++.|+|.||..|-..=+++.. .|.+|-+.+.
T Consensus 241 Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~-~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGE-KCYVCSQQTH 286 (313)
T ss_pred Cccccccccccccc---hhhcCCceeehhhhccccccCC-cceecccccc
Confidence 36799999999876 6778999999999888777644 4999976544
No 110
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.09 E-value=0.045 Score=37.86 Aligned_cols=42 Identities=24% Similarity=0.634 Sum_probs=23.9
Q ss_pred cccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCC-CCccc
Q 017521 158 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRT-FCPVC 199 (370)
Q Consensus 158 C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~-~CP~C 199 (370)
|.+|.+-...|.....-.|+=.+|..|++.++..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 6788887777754443358889999999999887442 49987
No 111
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.08 E-value=0.054 Score=39.39 Aligned_cols=45 Identities=24% Similarity=0.483 Sum_probs=31.7
Q ss_pred cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521 156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 206 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 206 (370)
..|..|...=. +-.++||+|+.+..|.+.|- .+ -||.|-.++...
T Consensus 8 ~~~~~~~~~~~---~~~~~pCgH~I~~~~f~~~r--Yn-gCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFVGT---KGTVLPCGHLICDNCFPGER--YN-GCPFCGTPFEFD 52 (55)
T ss_pred eeEEEcccccc---ccccccccceeeccccChhh--cc-CCCCCCCcccCC
Confidence 45666665433 34789999999999988752 23 499998877553
No 112
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.97 E-value=0.22 Score=48.77 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=35.6
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccc
Q 017521 153 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 203 (370)
Q Consensus 153 ~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i 203 (370)
.+...|+||+..-.++. .+..-|-+||..||...+..++. ||+=-.++
T Consensus 298 ~~~~~CpvClk~r~Npt--vl~vSGyVfCY~Ci~~Yv~~~~~-CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPT--VLEVSGYVFCYPCIFSYVVNYGH-CPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCc--eEEecceEEeHHHHHHHHHhcCC-CCccCCcc
Confidence 34679999999976652 22225999999999999997655 99864443
No 113
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.82 E-value=0.11 Score=50.97 Aligned_cols=51 Identities=24% Similarity=0.611 Sum_probs=36.6
Q ss_pred cccccccccccCCCee-EEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521 156 RTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 206 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v-~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 206 (370)
+.|+.|+|++...|+- .--|||-..|.-|...--+.-+..||-||+...+.
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de 66 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE 66 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence 4599999999876643 33458888888887664444456799999966554
No 114
>PF04641 Rtf2: Rtf2 RING-finger
Probab=91.82 E-value=0.24 Score=47.36 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=39.2
Q ss_pred CCCcccccccccccCCCeeE-EeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521 153 CTSRTCAICLEDYSVGEKLR-ILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 206 (370)
Q Consensus 153 ~~~~~C~ICLe~~~~~~~v~-~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 206 (370)
.....|+|...+|.....+. +.||||+|-..+|+.- . ....||+|-.++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCccccC
Confidence 45689999999996655544 4479999999999995 3 233599997776544
No 115
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.70 E-value=0.16 Score=50.77 Aligned_cols=30 Identities=27% Similarity=0.743 Sum_probs=22.9
Q ss_pred CCCcccHhHHHHHHhcCC------------CCCccccccccc
Q 017521 176 CRHKFHAFCVDSWLTSWR------------TFCPVCKRDART 205 (370)
Q Consensus 176 C~H~FH~~Ci~~Wl~~~~------------~~CP~CR~~i~~ 205 (370)
|.-++|.+|+.+|+..++ ..||+||+..+-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 566789999999986533 349999997654
No 116
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.59 E-value=0.071 Score=57.63 Aligned_cols=50 Identities=22% Similarity=0.513 Sum_probs=39.3
Q ss_pred cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCC-CCCcccccccccCCCC
Q 017521 156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWR-TFCPVCKRDARTSTGE 209 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~-~~CP~CR~~i~~~~~~ 209 (370)
..|.||++ .+.+.+.+|+|.|+..|+..-+.... ..||+||..+.+....
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~ 505 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLL 505 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHh
Confidence 79999999 45677888999999999988776522 3499999977765543
No 117
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.46 E-value=0.12 Score=51.06 Aligned_cols=49 Identities=22% Similarity=0.493 Sum_probs=38.9
Q ss_pred CCCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521 153 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 205 (370)
Q Consensus 153 ~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 205 (370)
.++..|+||...--. ....||+|.=|..||.+-|...+. |=.|+..+.+
T Consensus 420 sEd~lCpICyA~pi~---Avf~PC~H~SC~~CI~qHlmN~k~-CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPIN---AVFAPCSHRSCYGCITQHLMNCKR-CFFCKTTVID 468 (489)
T ss_pred cccccCcceecccch---hhccCCCCchHHHHHHHHHhcCCe-eeEecceeee
Confidence 456899999866332 256799999999999999988554 9999987764
No 118
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=91.37 E-value=0.21 Score=36.25 Aligned_cols=33 Identities=21% Similarity=0.716 Sum_probs=27.6
Q ss_pred CcccccccccccCCCeeEEeC-CCCcccHhHHHH
Q 017521 155 SRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDS 187 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lp-C~H~FH~~Ci~~ 187 (370)
...|.+|-+.|+++|.+.+=| |+-.+|..|.+.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 468999999998776666666 999999999765
No 119
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.18 E-value=0.11 Score=46.64 Aligned_cols=52 Identities=25% Similarity=0.653 Sum_probs=34.2
Q ss_pred CcccccccccccCC----CeeEEeCCCCcccHhHHHHHHhc----CCC------CCcccccccccC
Q 017521 155 SRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTS----WRT------FCPVCKRDARTS 206 (370)
Q Consensus 155 ~~~C~ICLe~~~~~----~~v~~lpC~H~FH~~Ci~~Wl~~----~~~------~CP~CR~~i~~~ 206 (370)
...|-||..---.| ..+--..||.-||.-|+..||.. ++. .||.|-.+|.-.
T Consensus 165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 35688886432222 22334459999999999999964 222 399998776543
No 120
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.76 E-value=0.13 Score=47.60 Aligned_cols=41 Identities=37% Similarity=0.941 Sum_probs=29.9
Q ss_pred ccccccccccCCCeeEEeCCCCc-ccHhHHHHHHhcCCCCCccccccccc
Q 017521 157 TCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART 205 (370)
Q Consensus 157 ~C~ICLe~~~~~~~v~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 205 (370)
.|-.|.+. +-.|..|||.|+ +|..|-+. + + .||+|+.....
T Consensus 160 ~Cr~C~~~---~~~VlllPCrHl~lC~~C~~~-~---~-~CPiC~~~~~s 201 (207)
T KOG1100|consen 160 SCRKCGER---EATVLLLPCRHLCLCGICDES-L---R-ICPICRSPKTS 201 (207)
T ss_pred cceecCcC---CceEEeecccceEeccccccc-C---c-cCCCCcChhhc
Confidence 38888776 345889999887 88888664 2 2 39999876544
No 121
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=89.60 E-value=0.16 Score=48.94 Aligned_cols=46 Identities=28% Similarity=0.693 Sum_probs=37.7
Q ss_pred CcccccccccccCC-CeeEEeCCCCcccHhHHHHHHhcCCCCCccccc
Q 017521 155 SRTCAICLEDYSVG-EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 201 (370)
Q Consensus 155 ~~~C~ICLe~~~~~-~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~ 201 (370)
...|+||.|.+... +.+..++|+|.-|..|+..-...+ -+||+|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 34599999987655 456788999999999999887776 66999977
No 122
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.24 E-value=0.17 Score=55.22 Aligned_cols=34 Identities=24% Similarity=0.601 Sum_probs=27.8
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHhHHHHHH
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWL 189 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl 189 (370)
++.|.+|...+... ...+.||||.||.+||.+-.
T Consensus 817 ~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 57899998887654 66788999999999997643
No 123
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.33 E-value=0.22 Score=47.12 Aligned_cols=53 Identities=23% Similarity=0.580 Sum_probs=37.3
Q ss_pred CCcccccccccccCCCee-EEeCC-----CCcccHhHHHHHHhcCC-------CCCcccccccccC
Q 017521 154 TSRTCAICLEDYSVGEKL-RILPC-----RHKFHAFCVDSWLTSWR-------TFCPVCKRDARTS 206 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v-~~lpC-----~H~FH~~Ci~~Wl~~~~-------~~CP~CR~~i~~~ 206 (370)
.+..|=||+..=+++..- -+-|| .|..|..|+..|+.+++ ..||.|+.+....
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 357899999875543211 34576 48899999999997532 3499998875544
No 124
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.19 E-value=0.16 Score=53.63 Aligned_cols=43 Identities=35% Similarity=0.665 Sum_probs=31.5
Q ss_pred cccccccccccCCCee-EEeCCCCcccHhHHHHHHhcCCCCCcccccc
Q 017521 156 RTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 202 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v-~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~ 202 (370)
..|.||+..|.....+ +-|-|||..|..|+..-..+ +|| |+++
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp-~~~D 55 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP-TKRD 55 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC-CCcc
Confidence 5799999988765433 34459999999999885443 488 7654
No 125
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=87.49 E-value=0.34 Score=47.43 Aligned_cols=44 Identities=23% Similarity=0.551 Sum_probs=33.8
Q ss_pred CCcccccccccccCCCeeEEeCC--CCcccHhHHHHHHhcCCCCCccccccccc
Q 017521 154 TSRTCAICLEDYSVGEKLRILPC--RHKFHAFCVDSWLTSWRTFCPVCKRDART 205 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC--~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 205 (370)
+-.+|+||.+.+... +..| ||+-+..|-.+ . ...||.||.++..
T Consensus 47 ~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~~---~-~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPP----IFQCDNGHLACSSCRTK---V-SNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCccc----ceecCCCcEehhhhhhh---h-cccCCcccccccc
Confidence 357899999998875 5568 79999888654 2 3349999998774
No 126
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=87.39 E-value=0.22 Score=48.40 Aligned_cols=41 Identities=32% Similarity=0.755 Sum_probs=27.0
Q ss_pred cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccc
Q 017521 156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 201 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~ 201 (370)
..|--|--.+.. .=|..||+|+||.+|-.. .. .+.||.|-.
T Consensus 91 HfCd~Cd~PI~I--YGRmIPCkHvFCl~CAr~--~~-dK~Cp~C~d 131 (389)
T KOG2932|consen 91 HFCDRCDFPIAI--YGRMIPCKHVFCLECARS--DS-DKICPLCDD 131 (389)
T ss_pred EeecccCCccee--eecccccchhhhhhhhhc--Cc-cccCcCccc
Confidence 456666444332 237889999999999765 22 235999854
No 127
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=87.35 E-value=0.57 Score=41.39 Aligned_cols=57 Identities=26% Similarity=0.582 Sum_probs=34.8
Q ss_pred CcccccccccccCC---------CeeEEeCCCC-cccHhHHHHHHhcC------------------------------CC
Q 017521 155 SRTCAICLEDYSVG---------EKLRILPCRH-KFHAFCVDSWLTSW------------------------------RT 194 (370)
Q Consensus 155 ~~~C~ICLe~~~~~---------~~v~~lpC~H-~FH~~Ci~~Wl~~~------------------------------~~ 194 (370)
+..|+||||---+. ..+|-.-|+- .-|..|+|+.-+.. +.
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 46899999974332 1112112442 25889999875421 12
Q ss_pred CCcccccccccCCCCCC
Q 017521 195 FCPVCKRDARTSTGEPP 211 (370)
Q Consensus 195 ~CP~CR~~i~~~~~~~~ 211 (370)
.||+||-.|..+.-..+
T Consensus 82 ~CPLCRG~V~GWtvve~ 98 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVVEP 98 (162)
T ss_pred cCccccCceeceEEchH
Confidence 39999998887765443
No 128
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=85.39 E-value=0.28 Score=55.60 Aligned_cols=48 Identities=29% Similarity=0.587 Sum_probs=37.5
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 204 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~ 204 (370)
+...|.||++.+.... .+..|+|.+++.|+..|+..+ ..||+|+....
T Consensus 1152 ~~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~-s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYAS-SRCPICKSIKG 1199 (1394)
T ss_pred cccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHh-ccCcchhhhhh
Confidence 4568999999987432 344599999999999999984 45999985433
No 129
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.18 E-value=0.73 Score=44.48 Aligned_cols=45 Identities=31% Similarity=0.592 Sum_probs=34.1
Q ss_pred ccccccccc-cCCC-eeEEeCCCCcccHhHHHHHHhcCCCCCccccc
Q 017521 157 TCAICLEDY-SVGE-KLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 201 (370)
Q Consensus 157 ~C~ICLe~~-~~~~-~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~ 201 (370)
.|++|-.+- -..+ ++.+=+|+|-.|..|++.-+......||.|-.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~ 48 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMV 48 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccc
Confidence 588998763 3332 33333799999999999999888888999944
No 130
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=83.69 E-value=0.41 Score=50.64 Aligned_cols=41 Identities=24% Similarity=0.660 Sum_probs=28.7
Q ss_pred Cccccccccc-----ccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccc
Q 017521 155 SRTCAICLED-----YSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 199 (370)
Q Consensus 155 ~~~C~ICLe~-----~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~C 199 (370)
...|.+|-.. |+.....+...|+++||+.|+.. ....||.|
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r----~s~~CPrC 556 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR----KSPCCPRC 556 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc----cCCCCCch
Confidence 4678888432 43334456777999999999665 34449999
No 131
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=83.51 E-value=0.54 Score=45.47 Aligned_cols=52 Identities=27% Similarity=0.591 Sum_probs=37.3
Q ss_pred CcccccccccccCCCe-eEEeCCC-----CcccHhHHHHHHhc-CCCCCcccccccccC
Q 017521 155 SRTCAICLEDYSVGEK-LRILPCR-----HKFHAFCVDSWLTS-WRTFCPVCKRDARTS 206 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~-v~~lpC~-----H~FH~~Ci~~Wl~~-~~~~CP~CR~~i~~~ 206 (370)
+..|-||.++...... ..+.||. +..|..|++.|+.. .+..|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4689999998654321 4567762 55799999999985 345699998755444
No 132
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.81 E-value=0.74 Score=49.65 Aligned_cols=26 Identities=27% Similarity=0.595 Sum_probs=21.4
Q ss_pred EEeCCCCcccHhHHHHHHhcCCCCCcc
Q 017521 172 RILPCRHKFHAFCVDSWLTSWRTFCPV 198 (370)
Q Consensus 172 ~~lpC~H~FH~~Ci~~Wl~~~~~~CP~ 198 (370)
....|+|+-|.+|...|+..... ||.
T Consensus 1044 ~Cg~C~Hv~H~sc~~eWf~~gd~-Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDV-CPS 1069 (1081)
T ss_pred hhccccccccHHHHHHHHhcCCc-CCC
Confidence 44569999999999999998554 874
No 133
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=82.57 E-value=0.72 Score=43.38 Aligned_cols=46 Identities=33% Similarity=0.717 Sum_probs=35.8
Q ss_pred CCccccccccccc-CCC-eeEEeC-CCCcccHhHHHHHHhcCCCCCc--cc
Q 017521 154 TSRTCAICLEDYS-VGE-KLRILP-CRHKFHAFCVDSWLTSWRTFCP--VC 199 (370)
Q Consensus 154 ~~~~C~ICLe~~~-~~~-~v~~lp-C~H~FH~~Ci~~Wl~~~~~~CP--~C 199 (370)
.+..|+||..+-- ..+ ++.+-| |-|..|..|++.-+......|| -|
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC 59 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGC 59 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccH
Confidence 3468999998743 333 344446 9999999999999998888899 78
No 134
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=82.10 E-value=0.68 Score=50.11 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=38.4
Q ss_pred CCcccccccccccCC-CeeEEeC---CCCcccHhHHHHHHhc-----CCCCCcccccccccC
Q 017521 154 TSRTCAICLEDYSVG-EKLRILP---CRHKFHAFCVDSWLTS-----WRTFCPVCKRDARTS 206 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~-~~v~~lp---C~H~FH~~Ci~~Wl~~-----~~~~CP~CR~~i~~~ 206 (370)
....|.||..++... |-.-.+| |.|-||..||..|+.+ .+..|+.|...|..+
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW 156 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSW 156 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhh
Confidence 457788888888662 3344555 9999999999999875 344589997755443
No 135
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=81.39 E-value=1.4 Score=47.94 Aligned_cols=54 Identities=22% Similarity=0.578 Sum_probs=39.7
Q ss_pred CCcccccccccccCCCeeEEeCCCC-----cccHhHHHHHHhc-CCCCCcccccccccCCC
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCRH-----KFHAFCVDSWLTS-WRTFCPVCKRDARTSTG 208 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~H-----~FH~~Ci~~Wl~~-~~~~CP~CR~~i~~~~~ 208 (370)
+...|-||..+=..++++ .-||+. -.|.+|+-+|+.- ..+.|-+|+.++.-.+-
T Consensus 11 d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDI 70 (1175)
T ss_pred cchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeee
Confidence 347899999887666554 346642 3899999999986 34569999987765543
No 136
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=81.22 E-value=1.6 Score=47.52 Aligned_cols=36 Identities=33% Similarity=0.482 Sum_probs=33.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccC
Q 017521 1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNE 36 (370)
Q Consensus 1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~ 36 (370)
++|+|+|++-|.-.+.+|++||+++||.|||+|.+-
T Consensus 183 ~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~ 218 (702)
T KOG2195|consen 183 LSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDP 218 (702)
T ss_pred ccCceEEEEccccchhhhHhhHHHhhcCcEEEeecc
Confidence 479999999999999999999999999999999764
No 137
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.08 E-value=1 Score=47.70 Aligned_cols=47 Identities=34% Similarity=0.870 Sum_probs=38.0
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCCC
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG 208 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~ 208 (370)
....|.||++++ ..++.+|. |..|+.+|+..+ ..||.|+..+..+..
T Consensus 478 ~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~-~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITPCS---HALCLRKWLYVQ-EVCPLCHTYMKEDDF 524 (543)
T ss_pred ccCcchHHHHHH----Hhcccccc---chhHHHhhhhhc-cccCCCchhhhcccc
Confidence 357899999998 45778888 899999999984 459999887766543
No 139
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.76 E-value=0.88 Score=46.11 Aligned_cols=37 Identities=30% Similarity=0.727 Sum_probs=28.8
Q ss_pred Cccccccc-ccccCCCeeEEeCCCCcccHhHHHHHHhc
Q 017521 155 SRTCAICL-EDYSVGEKLRILPCRHKFHAFCVDSWLTS 191 (370)
Q Consensus 155 ~~~C~ICL-e~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~ 191 (370)
..+|.||. +.....+...++.|+|.|+.+|+.+-++.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 57899999 55444455556779999999999988774
No 140
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.80 E-value=1.8 Score=43.47 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=37.7
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCC--CCCcccc
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWR--TFCPVCK 200 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~--~~CP~CR 200 (370)
...|+|=.+.=.+...-..|.|||+..++-+.+--+... ..||.|=
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 368999888877777778899999999999999766544 5699993
No 141
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=77.18 E-value=1.2 Score=40.94 Aligned_cols=41 Identities=32% Similarity=0.838 Sum_probs=29.6
Q ss_pred Cccccccccc-----ccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccc
Q 017521 155 SRTCAICLED-----YSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 201 (370)
Q Consensus 155 ~~~C~ICLe~-----~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~ 201 (370)
+..|-+|-++ |+.+..++.-.|+-+||..|... + .||.|.+
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~-~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----K-SCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----C-CCCCcHh
Confidence 5789999753 44444556666999999999763 3 4999943
No 142
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.70 E-value=1.5 Score=42.48 Aligned_cols=30 Identities=20% Similarity=0.605 Sum_probs=22.9
Q ss_pred CCCcccHhHHHHHHhcC------------CCCCccccccccc
Q 017521 176 CRHKFHAFCVDSWLTSW------------RTFCPVCKRDART 205 (370)
Q Consensus 176 C~H~FH~~Ci~~Wl~~~------------~~~CP~CR~~i~~ 205 (370)
|.-++|..|+.+|+..+ +-+||+||+..+-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 56788999999998542 3359999997654
No 143
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=73.55 E-value=0.92 Score=48.75 Aligned_cols=47 Identities=34% Similarity=0.751 Sum_probs=36.3
Q ss_pred cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC--CCCCccccccccc
Q 017521 156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW--RTFCPVCKRDART 205 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~--~~~CP~CR~~i~~ 205 (370)
.+|.||++.+... ..+.|.|.|+..|+..-|... ...||+|+..+..
T Consensus 22 lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 22 LECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred ccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 5899999998766 566799999999998755542 3459999865543
No 144
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=67.72 E-value=5 Score=39.53 Aligned_cols=69 Identities=23% Similarity=0.408 Sum_probs=46.2
Q ss_pred ccHHHHhccceeeeeeeeecc-CCCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccc
Q 017521 132 MSRRLVKAMPSLIFTAVVEDN-CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 201 (370)
Q Consensus 132 ~~~~~~~~lp~~~~~~~~~~~-~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~ 201 (370)
+.+....-+|...|.+..... .....|-.|.++.......+.-.|++.||.+|=.--=+.-+ .||-|..
T Consensus 306 LARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh-~CpgCeh 375 (378)
T KOG2807|consen 306 LARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLH-NCPGCEH 375 (378)
T ss_pred HHHHHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhh-cCCCcCC
Confidence 334555556777776665432 34567999988877777777777999999999433222323 4999964
No 145
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=67.61 E-value=3.4 Score=29.39 Aligned_cols=44 Identities=23% Similarity=0.512 Sum_probs=21.0
Q ss_pred cccccccccccCCCeeEEeCCCCcccHhHHHHHHhc----CCCCCcccccc
Q 017521 156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS----WRTFCPVCKRD 202 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~----~~~~CP~CR~~ 202 (370)
..|+|....++. .+|-..|.|+-+.+ ++.||.. ..-.||+|.++
T Consensus 3 L~CPls~~~i~~--P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 368888888765 47888899973222 4456654 22349999763
No 146
>PF15050 SCIMP: SCIMP protein
Probab=65.02 E-value=8.6 Score=32.49 Aligned_cols=11 Identities=36% Similarity=0.800 Sum_probs=5.9
Q ss_pred chhHHHHHHHH
Q 017521 87 AWSIMAISFIS 97 (370)
Q Consensus 87 ~~sIm~I~fI~ 97 (370)
.|.|+++++|+
T Consensus 8 FWiiLAVaII~ 18 (133)
T PF15050_consen 8 FWIILAVAIIL 18 (133)
T ss_pred hHHHHHHHHHH
Confidence 46666655433
No 147
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=63.27 E-value=5.6 Score=34.27 Aligned_cols=48 Identities=31% Similarity=0.692 Sum_probs=32.1
Q ss_pred CCcccccccccccCCCeeEEe-C---CCCcccHhHH-HHHHhc-CCCCCcccccccc
Q 017521 154 TSRTCAICLEDYSVGEKLRIL-P---CRHKFHAFCV-DSWLTS-WRTFCPVCKRDAR 204 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~l-p---C~H~FH~~Ci-~~Wl~~-~~~~CP~CR~~i~ 204 (370)
.-.+|.||.|.-.+. +-| | ||-..+..|- ..|-.- ....||+|+...-
T Consensus 79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 358999999986554 223 3 8887777775 556432 3455999987554
No 148
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.44 E-value=8.3 Score=32.31 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=32.1
Q ss_pred CcccccccccccCCC-----------eeEEeCCCCcccHhHHHHHHhcCCCCCcccc
Q 017521 155 SRTCAICLEDYSVGE-----------KLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 200 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~-----------~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR 200 (370)
...|--|+..|.... .-+.-.|++.|+.+|=.-|-+.-+. ||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~-CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHC-CPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccC-CcCCC
Confidence 357999999886431 1224459999999997776666454 99995
No 149
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=59.75 E-value=4 Score=28.45 Aligned_cols=45 Identities=22% Similarity=0.569 Sum_probs=31.2
Q ss_pred ccccccccccCCCeeEEeCCCCcccHhHHHHHHhc-----CCCCCccccc
Q 017521 157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS-----WRTFCPVCKR 201 (370)
Q Consensus 157 ~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~-----~~~~CP~CR~ 201 (370)
.|.||...-..++.|.--.|+-.||..|+..=... ..-.||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 38899996666666666669999999998653321 1335888863
No 150
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=58.45 E-value=5 Score=37.19 Aligned_cols=42 Identities=29% Similarity=0.777 Sum_probs=33.7
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccc
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 199 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~C 199 (370)
-..|.+|.+-.-.+ +|.=.|+-.+|..|+.+.+++ ...||.|
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~-~~~cphc 222 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQR-RDICPHC 222 (235)
T ss_pred HHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcc-cCcCCch
Confidence 36899998875544 455568888999999999998 5569999
No 151
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=58.39 E-value=5.4 Score=38.27 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=33.2
Q ss_pred cccccccccccCCCeeEEeC----CCCcccHhHHHHHH-hcC-------CCCCcccccc
Q 017521 156 RTCAICLEDYSVGEKLRILP----CRHKFHAFCVDSWL-TSW-------RTFCPVCKRD 202 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v~~lp----C~H~FH~~Ci~~Wl-~~~-------~~~CP~CR~~ 202 (370)
..|-+|.+++.+.+..+..- |+-++|..|+..-+ ..+ ...||.|++.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~ 241 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKF 241 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhce
Confidence 68999999995555444331 88899999998843 222 2349999874
No 152
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=57.77 E-value=7.8 Score=42.17 Aligned_cols=41 Identities=22% Similarity=0.434 Sum_probs=29.2
Q ss_pred cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcc
Q 017521 156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPV 198 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~ 198 (370)
..|.+|-..+. |..+-.--|+|.=|.+|+..|+..... ||.
T Consensus 780 ~~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~-ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASP-CAK 820 (839)
T ss_pred cCceeecceee-eeEeecccccccccHHHHHHHHhcCCC-Ccc
Confidence 47888865543 222333339999999999999998544 876
No 153
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=57.37 E-value=6.1 Score=27.99 Aligned_cols=43 Identities=23% Similarity=0.565 Sum_probs=22.6
Q ss_pred ccccccccccCCCeeEEeCC-CCcccHhHHHHHHhcCCCCCccccccccc
Q 017521 157 TCAICLEDYSVGEKLRILPC-RHKFHAFCVDSWLTSWRTFCPVCKRDART 205 (370)
Q Consensus 157 ~C~ICLe~~~~~~~v~~lpC-~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~ 205 (370)
.|--|+-. ... ...| .|-.+..|+..-|... ..||+|..+++.
T Consensus 4 nCKsCWf~--~k~---Li~C~dHYLCl~CLt~ml~~s-~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFA--NKG---LIKCSDHYLCLNCLTLMLSRS-DRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S----SS---EEE-SS-EEEHHHHHHT-SSS-SEETTTTEE---
T ss_pred cChhhhhc--CCC---eeeecchhHHHHHHHHHhccc-cCCCcccCcCcc
Confidence 35556544 222 2348 5999999999977774 459999988765
No 154
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=57.08 E-value=6.3 Score=40.23 Aligned_cols=34 Identities=29% Similarity=0.628 Sum_probs=27.2
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS 191 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~ 191 (370)
...|+||..-|++. ++|||+|-.|..|...-+.+
T Consensus 4 elkc~vc~~f~~ep---iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 4 ELKCPVCGSFYREP---IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccCceehhhccCc---eEeecccHHHHHHHHhhccc
Confidence 35799999988766 89999999888887755443
No 155
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=56.24 E-value=7 Score=31.20 Aligned_cols=6 Identities=33% Similarity=0.539 Sum_probs=2.3
Q ss_pred hhhhcc
Q 017521 107 TCFFVR 112 (370)
Q Consensus 107 ~~~~~~ 112 (370)
++||.+
T Consensus 49 ilwfvC 54 (94)
T PF05393_consen 49 ILWFVC 54 (94)
T ss_pred HHHHHH
Confidence 333333
No 156
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=55.13 E-value=3e+02 Score=32.27 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=9.4
Q ss_pred CcccccccccccCC
Q 017521 155 SRTCAICLEDYSVG 168 (370)
Q Consensus 155 ~~~C~ICLe~~~~~ 168 (370)
.+.|.-|-|.+..|
T Consensus 1391 kd~~rgvsEnImlg 1404 (1605)
T KOG0260|consen 1391 KDPCRGVSENIMLG 1404 (1605)
T ss_pred cCCCccceeeeeec
Confidence 45677777776655
No 157
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=55.06 E-value=3e+02 Score=32.23 Aligned_cols=11 Identities=9% Similarity=0.160 Sum_probs=5.2
Q ss_pred CChHHHHHHHH
Q 017521 13 CSFEDKVRNAQ 23 (370)
Q Consensus 13 CsF~~Kv~nAq 23 (370)
-+..+|+...+
T Consensus 1194 ltm~~ia~~i~ 1204 (1605)
T KOG0260|consen 1194 LTMEQIAEKIN 1204 (1605)
T ss_pred ccHHHHHHHHH
Confidence 34555555443
No 158
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.93 E-value=7.4 Score=40.17 Aligned_cols=36 Identities=31% Similarity=0.659 Sum_probs=30.7
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS 191 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~ 191 (370)
...+|-||.+.+.. .+..+.|+|.|+..|+...+++
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 45789999999876 5677889999999999998876
No 159
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=54.66 E-value=13 Score=23.55 Aligned_cols=37 Identities=24% Similarity=0.459 Sum_probs=24.0
Q ss_pred ccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccc
Q 017521 157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 203 (370)
Q Consensus 157 ~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i 203 (370)
.|..|-+.+...+... ..=+..||..|+ .|..|+..+
T Consensus 1 ~C~~C~~~i~~~~~~~-~~~~~~~H~~Cf---------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVL-RALGKVWHPECF---------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEE-EeCCccccccCC---------CCcccCCcC
Confidence 3788888877653332 224778998883 377776655
No 160
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.95 E-value=5.8 Score=43.32 Aligned_cols=42 Identities=21% Similarity=0.514 Sum_probs=31.6
Q ss_pred cccccccccccC-C---CeeEEeCCCCcccHhHHHHHHhcCCCCCccc
Q 017521 156 RTCAICLEDYSV-G---EKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 199 (370)
Q Consensus 156 ~~C~ICLe~~~~-~---~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~C 199 (370)
..|.-|.+..-. + +-+.++-|+|+||+.|+-.-..+++ |-.|
T Consensus 785 ~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~--~~~~ 830 (846)
T KOG2066|consen 785 ERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA--CNIE 830 (846)
T ss_pred hhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc--cChh
Confidence 579999987642 2 5678899999999999977666533 6555
No 161
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.44 E-value=7.1 Score=37.77 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=28.3
Q ss_pred CcccccccccccCCCeeEEeC--CCCcccHhHHHHHHhc
Q 017521 155 SRTCAICLEDYSVGEKLRILP--CRHKFHAFCVDSWLTS 191 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lp--C~H~FH~~Ci~~Wl~~ 191 (370)
...|.+|.|.+++..-|. -| =.|.||..|-.+-+++
T Consensus 268 pLcCTLC~ERLEDTHFVQ-CPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQ-CPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ceeehhhhhhhccCceee-cCCCcccceecccCHHHHHh
Confidence 368999999998765444 22 2799999999998876
No 162
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=52.05 E-value=20 Score=26.47 Aligned_cols=56 Identities=16% Similarity=0.271 Sum_probs=33.0
Q ss_pred eEEEEEcCCCChHHHHHHHHH-cCCcEEEEeccCCCcceeeccCCCCCceeeEEEEec
Q 017521 4 AFVLTIRGGCSFEDKVRNAQK-AGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSK 60 (370)
Q Consensus 4 ~ivLV~RG~CsF~~Kv~nAq~-aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~ 60 (370)
+|+|..+-+|.+=.|++.+.+ .|..... .|-+.+.....+........+|+++|..
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~-~~v~~~~~~~~~~~~~g~~~vP~ifi~g 58 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEE-IPLGKDITGRSLRAVTGAMTVPQVFIDG 58 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEE-EECCCChhHHHHHHHhCCCCcCeEEECC
Confidence 688889999999999997766 4555433 3322221111111111234689999864
No 163
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=50.68 E-value=7.4 Score=25.70 Aligned_cols=25 Identities=36% Similarity=0.845 Sum_probs=16.7
Q ss_pred ccccccccccCCC--------eeEEeCCCCccc
Q 017521 157 TCAICLEDYSVGE--------KLRILPCRHKFH 181 (370)
Q Consensus 157 ~C~ICLe~~~~~~--------~v~~lpC~H~FH 181 (370)
+|+=|...|..+| .++.-.|+|+|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 5778888876654 355555788774
No 164
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=49.08 E-value=12 Score=26.84 Aligned_cols=41 Identities=27% Similarity=0.696 Sum_probs=19.8
Q ss_pred cccccccccCCC------ee-EEeCCCCcccHhHHHHHHhc-CCCCCcccc
Q 017521 158 CAICLEDYSVGE------KL-RILPCRHKFHAFCVDSWLTS-WRTFCPVCK 200 (370)
Q Consensus 158 C~ICLe~~~~~~------~v-~~lpC~H~FH~~Ci~~Wl~~-~~~~CP~CR 200 (370)
|--|+..|..+. .. +.-.|++.|+.+| |..+-. -+ +||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dC-D~fiHE~LH-~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDC-DVFIHETLH-NCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHH-HHTTTTTS--SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCc-Chhhhcccc-CCcCCC
Confidence 556777776542 22 2223999999999 443332 23 399883
No 165
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=47.81 E-value=22 Score=27.10 Aligned_cols=58 Identities=17% Similarity=0.347 Sum_probs=34.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHH-cCCcEEEEeccCCCcceeeccCCCCCceeeEEEEec
Q 017521 2 SSAFVLTIRGGCSFEDKVRNAQK-AGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSK 60 (370)
Q Consensus 2 ~~~ivLV~RG~CsF~~Kv~nAq~-aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~ 60 (370)
+++|+|..+-+|.+=.|++.+.+ .|.....+ |-+.+.....+........+|+++|..
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~i-di~~~~~~~~~~~~~g~~~vP~i~i~g 65 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEKGYDFEEI-PLGNDARGRSLRAVTGATTVPQVFIGG 65 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHcCCCcEEE-ECCCChHHHHHHHHHCCCCcCeEEECC
Confidence 46799999999999999987655 56655443 322111111111111224689999853
No 166
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=46.96 E-value=21 Score=27.97 Aligned_cols=58 Identities=21% Similarity=0.477 Sum_probs=22.8
Q ss_pred CCcccccccccccCC--CeeEE--eCCCCcccHhHHHHHHhcCCCCCcccccccccCCCCCC
Q 017521 154 TSRTCAICLEDYSVG--EKLRI--LPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPP 211 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~--~~v~~--lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~~~ 211 (370)
....|.||-++.... -++.+ .-|+--.++.|.+-=.+..+..||.|+.......+.+.
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~ 69 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPR 69 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCC
Confidence 457899999987432 12322 23777789999887666655669999987776655544
No 167
>PLN02189 cellulose synthase
Probab=45.33 E-value=28 Score=39.55 Aligned_cols=58 Identities=21% Similarity=0.440 Sum_probs=38.3
Q ss_pred CCccccccccccc---CCCeeEEe-CCCCcccHhHHHHHHhcCCCCCcccccccccCCCCCC
Q 017521 154 TSRTCAICLEDYS---VGEKLRIL-PCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPP 211 (370)
Q Consensus 154 ~~~~C~ICLe~~~---~~~~v~~l-pC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~~~ 211 (370)
....|.||-++.. +|+..+.- -|+--.|..|.+-=.+..+..||.|+....-.++.+.
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kgs~~ 94 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKGSPR 94 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCC
Confidence 3468999999974 33332222 2777789999865444455569999887765554443
No 168
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.19 E-value=25 Score=33.59 Aligned_cols=50 Identities=12% Similarity=0.252 Sum_probs=36.3
Q ss_pred CcccccccccccCCCee-EEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521 155 SRTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 207 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v-~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~ 207 (370)
...|+|=--+|...... ...+|||+|-..-+.+. + ...|++|-+.+.+.+
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei-k--as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI-K--ASVCHVCGAAYQEDD 161 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh-h--hccccccCCcccccC
Confidence 47899988888765444 44469999998887773 2 345999988766554
No 169
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=42.64 E-value=35 Score=24.03 Aligned_cols=30 Identities=23% Similarity=0.435 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhhhhccccccccccc
Q 017521 92 AISFISLLAMSAVLATCFFVRRHRIRREAP 121 (370)
Q Consensus 92 ~I~fI~ll~i~~vL~~~~~~~r~r~rr~~~ 121 (370)
.+.|++.+.+.++..+++|..++.+-|...
T Consensus 12 ~F~~lIC~Fl~~~~~F~~F~~Kqilfr~~~ 41 (54)
T PF06716_consen 12 AFGFLICLFLFCLVVFIWFVYKQILFRNNP 41 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 333333333333333444444544444433
No 170
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=39.47 E-value=21 Score=31.89 Aligned_cols=25 Identities=32% Similarity=0.595 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhhhhcccccccc
Q 017521 94 SFISLLAMSAVLATCFFVRRHRIRR 118 (370)
Q Consensus 94 ~fI~ll~i~~vL~~~~~~~r~r~rr 118 (370)
+|++++++.+++++||.++..|.|+
T Consensus 97 ~~~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 97 ALYVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444455555555566555555554
No 171
>PRK10824 glutaredoxin-4; Provisional
Probab=39.09 E-value=34 Score=28.67 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=34.1
Q ss_pred CceEEEEEcC-----CCChHHHHHHHH-HcCCcEEEEeccCCCcc-eeeccCCCCCceeeEEEEecc
Q 017521 2 SSAFVLTIRG-----GCSFEDKVRNAQ-KAGFEAAIVYDNEDDGV-LVAMAGNSAGIKIHAVFVSKA 61 (370)
Q Consensus 2 ~~~ivLV~RG-----~CsF~~Kv~nAq-~aGA~avIVyn~~~~~~-~~~m~g~~~~i~IpvVfIs~~ 61 (370)
+++||+...| .|.|-.+++..- ..|...-. +|-.++.. ...+..-....++|-|||...
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~-idi~~d~~~~~~l~~~sg~~TVPQIFI~G~ 79 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAY-VDILQNPDIRAELPKYANWPTFPQLWVDGE 79 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceE-EEecCCHHHHHHHHHHhCCCCCCeEEECCE
Confidence 4688999988 899999998765 45655332 23222111 111111112346899998754
No 172
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=39.01 E-value=17 Score=38.67 Aligned_cols=34 Identities=24% Similarity=0.575 Sum_probs=24.3
Q ss_pred CCcccccccccccC-----------CCeeEEeCCCCcccHhHHHHH
Q 017521 154 TSRTCAICLEDYSV-----------GEKLRILPCRHKFHAFCVDSW 188 (370)
Q Consensus 154 ~~~~C~ICLe~~~~-----------~~~v~~lpC~H~FH~~Ci~~W 188 (370)
....|+||.|.|+. .+.|.+. =|-+||..|+..-
T Consensus 512 ~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le-~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 512 RQASCPICQEKFEVVFDQEEDLWMYKDAVYLE-FGRIFHSKCLSEK 556 (579)
T ss_pred cccCCcccccccceeecchhhheeecceeeec-cCceeeccccchH
Confidence 45789999999865 1233332 5889999998764
No 173
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.46 E-value=41 Score=32.95 Aligned_cols=51 Identities=24% Similarity=0.543 Sum_probs=38.9
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 207 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~ 207 (370)
+...|-||...+...+.. --|.|.|...|...|....+. ||.||..+....
T Consensus 104 ~~~~~~~~~g~l~vpt~~--qg~w~qf~~~~p~~~~~~~~~-~~d~~~~~~pv~ 154 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRI--QGCWHQFCYVCPKSNFAMGND-CPDCRGKISPVL 154 (324)
T ss_pred CccceeeeeeeEEecccc--cCceeeeeecCCchhhhhhhc-cchhhcCcCcee
Confidence 457899999887655422 239999999999999998665 999988655443
No 174
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=38.38 E-value=48 Score=24.50 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=34.1
Q ss_pred ceEEEEEcCCCChHHHHHHHH-HcCCcEEEEeccCCCcc----eeeccCCCCCceeeEEEEec
Q 017521 3 SAFVLTIRGGCSFEDKVRNAQ-KAGFEAAIVYDNEDDGV----LVAMAGNSAGIKIHAVFVSK 60 (370)
Q Consensus 3 ~~ivLV~RG~CsF~~Kv~nAq-~aGA~avIVyn~~~~~~----~~~m~g~~~~i~IpvVfIs~ 60 (370)
|+|+|.-..+|.+-.|++.+. +.|.....+ |-..+.. +..+.+ ...+|++|+..
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~-di~~~~~~~~el~~~~g---~~~vP~v~i~~ 59 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEI-NIDIFPERKAELEERTG---SSVVPQIFFNE 59 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEEE-ECCCCHHHHHHHHHHhC---CCCcCEEEECC
Confidence 578899999999999999754 567664443 4332211 212222 24579998864
No 175
>PF15102 TMEM154: TMEM154 protein family
Probab=38.24 E-value=19 Score=31.56 Aligned_cols=8 Identities=38% Similarity=0.970 Sum_probs=5.8
Q ss_pred HHHHHHhc
Q 017521 184 CVDSWLTS 191 (370)
Q Consensus 184 Ci~~Wl~~ 191 (370)
=+|+|+..
T Consensus 129 eldkwm~s 136 (146)
T PF15102_consen 129 ELDKWMNS 136 (146)
T ss_pred HHHhHHHh
Confidence 47888876
No 176
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=38.20 E-value=43 Score=26.20 Aligned_cols=58 Identities=21% Similarity=0.351 Sum_probs=32.7
Q ss_pred CceEEEEEcC-----CCChHHHHHHHHH-cCCcEEEEeccCCCcce-eeccCCCCCceeeEEEEec
Q 017521 2 SSAFVLTIRG-----GCSFEDKVRNAQK-AGFEAAIVYDNEDDGVL-VAMAGNSAGIKIHAVFVSK 60 (370)
Q Consensus 2 ~~~ivLV~RG-----~CsF~~Kv~nAq~-aGA~avIVyn~~~~~~~-~~m~g~~~~i~IpvVfIs~ 60 (370)
+++||+...| .|.|-.|++..-+ .|...-. +|-..+... ..+.......++|.+||..
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~-idv~~~~~~~~~l~~~~g~~tvP~vfi~g 71 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGT-FDILEDEEVRQGLKEYSNWPTFPQLYVNG 71 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEE-EEcCCCHHHHHHHHHHhCCCCCCEEEECC
Confidence 3578888776 8999999886655 5655333 342222111 1111111123689999864
No 177
>PLN02436 cellulose synthase A
Probab=37.92 E-value=41 Score=38.45 Aligned_cols=57 Identities=25% Similarity=0.475 Sum_probs=37.5
Q ss_pred Cccccccccccc---CCCeeE-EeCCCCcccHhHHHHHHhcCCCCCcccccccccCCCCCC
Q 017521 155 SRTCAICLEDYS---VGEKLR-ILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPP 211 (370)
Q Consensus 155 ~~~C~ICLe~~~---~~~~v~-~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~~~ 211 (370)
...|.||-++.. +||..+ +--|+--.|..|.+-=.+..+..||.|+......++.+.
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kgs~~ 96 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPR 96 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCC
Confidence 468999999963 344322 222666689999965445555569999887765444433
No 178
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=37.86 E-value=17 Score=23.99 Aligned_cols=26 Identities=35% Similarity=0.719 Sum_probs=17.1
Q ss_pred cccccccccccCCC--------eeEEeCCCCccc
Q 017521 156 RTCAICLEDYSVGE--------KLRILPCRHKFH 181 (370)
Q Consensus 156 ~~C~ICLe~~~~~~--------~v~~lpC~H~FH 181 (370)
.+|+-|-..|+..+ +|+.-.|+|+|.
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 35888888776543 455555788775
No 179
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.94 E-value=17 Score=36.90 Aligned_cols=44 Identities=27% Similarity=0.583 Sum_probs=29.6
Q ss_pred CcccccccccccCCCeeEEeC--CCCcccHhHHHHHHhcCCCCCccc
Q 017521 155 SRTCAICLEDYSVGEKLRILP--CRHKFHAFCVDSWLTSWRTFCPVC 199 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lp--C~H~FH~~Ci~~Wl~~~~~~CP~C 199 (370)
-..|+.|.-.++..+.+-.+. |+|.|+..|...|...... |..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~-~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGE-CYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCcc-ccCc
Confidence 357888876665444332222 8999999999999887443 6444
No 180
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=34.96 E-value=8.5 Score=37.52 Aligned_cols=36 Identities=33% Similarity=0.695 Sum_probs=29.8
Q ss_pred cccccccccccCCCeeEEeCCCCcccHhHHHHHHhc
Q 017521 156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS 191 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~ 191 (370)
..|.+|+++|..+.....+-|.-+||..|+-.|+..
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTT 250 (288)
T ss_pred eecHHHHHHHhcccccchhhcccccccccccccccc
Confidence 489999999987666666667669999999999877
No 181
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=34.72 E-value=28 Score=21.67 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=10.9
Q ss_pred ccccccccccCCCeeEEeCCCCcccHhHH
Q 017521 157 TCAICLEDYSVGEKLRILPCRHKFHAFCV 185 (370)
Q Consensus 157 ~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci 185 (370)
.|.+|.+....+-.-+-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 58888888765334455669999999985
No 182
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=34.50 E-value=54 Score=28.82 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=19.4
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHhhhhhccccc
Q 017521 81 PSFENSAWSIMAISFISLLAMSAVLATCFFVRRHR 115 (370)
Q Consensus 81 p~~e~s~~sIm~I~fI~ll~i~~vL~~~~~~~r~r 115 (370)
|.+......++++.+.+++.+.+++++++.++.+|
T Consensus 113 p~~gY~nklilaisvtvv~~iliii~CLiei~shr 147 (154)
T PF14914_consen 113 PGYGYNNKLILAISVTVVVMILIIIFCLIEICSHR 147 (154)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444445666666666555555555555555554
No 183
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=33.75 E-value=14 Score=37.49 Aligned_cols=46 Identities=20% Similarity=0.480 Sum_probs=0.0
Q ss_pred CCcccccccccccCC-----------CeeEEeCCCCcccHhHHHHHHhc-----CCCCCcccccc
Q 017521 154 TSRTCAICLEDYSVG-----------EKLRILPCRHKFHAFCVDSWLTS-----WRTFCPVCKRD 202 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~-----------~~v~~lpC~H~FH~~Ci~~Wl~~-----~~~~CP~CR~~ 202 (370)
...+|+|=|..+... +...-|.|||++.. ..|-.. ....||+||..
T Consensus 276 ~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 276 GRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -----------------------------------------------------------------
T ss_pred cCCCCCcCCCccccccccccccccccCceeeccccceeee---cccccccccccccccCCCcccc
Confidence 356899887665332 23355679998663 467532 12359999874
No 184
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=33.69 E-value=38 Score=23.79 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=22.7
Q ss_pred cccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521 158 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 206 (370)
Q Consensus 158 C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~ 206 (370)
|..|-+.+..++.+ +..-+..||..|+ .|-.|+..|...
T Consensus 1 C~~C~~~I~~~~~~-~~~~~~~~H~~Cf---------~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIV-IKAMGKFWHPECF---------KCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEE-EEETTEEEETTTS---------BETTTTCBTTTS
T ss_pred CCCCCCCccCcEEE-EEeCCcEEEcccc---------ccCCCCCccCCC
Confidence 56676776654433 2235677777762 367776666543
No 185
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=33.45 E-value=31 Score=33.81 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhhhhhccccc
Q 017521 95 FISLLAMSAVLATCFFVRRHR 115 (370)
Q Consensus 95 fI~ll~i~~vL~~~~~~~r~r 115 (370)
++++++++++++++|++.|+|
T Consensus 262 iiaIliIVLIMvIIYLILRYR 282 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLILRYR 282 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 186
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=32.28 E-value=11 Score=26.88 Aligned_cols=11 Identities=36% Similarity=0.996 Sum_probs=5.4
Q ss_pred CCccccccccc
Q 017521 195 FCPVCKRDART 205 (370)
Q Consensus 195 ~CP~CR~~i~~ 205 (370)
.||+|.+++.+
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 59999887754
No 187
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=31.98 E-value=45 Score=32.92 Aligned_cols=53 Identities=23% Similarity=0.497 Sum_probs=34.7
Q ss_pred CCccccccccccc---------CCC-------eeEEeCCCCcccHhHHHHHHhc--------CCCCCcccccccccC
Q 017521 154 TSRTCAICLEDYS---------VGE-------KLRILPCRHKFHAFCVDSWLTS--------WRTFCPVCKRDARTS 206 (370)
Q Consensus 154 ~~~~C~ICLe~~~---------~~~-------~v~~lpC~H~FH~~Ci~~Wl~~--------~~~~CP~CR~~i~~~ 206 (370)
...+|++|+..=. .+- .-..-||||+--+.-..-|-+. -+..||.|-..+...
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 3579999997611 110 1134579999888888999765 123499997765443
No 188
>PF15050 SCIMP: SCIMP protein
Probab=31.84 E-value=33 Score=29.09 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 017521 90 IMAISFISLLAMSAVLATCFF 110 (370)
Q Consensus 90 Im~I~fI~ll~i~~vL~~~~~ 110 (370)
+.+|..+.++++.+++++++|
T Consensus 8 FWiiLAVaII~vS~~lglIly 28 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILY 28 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554443
No 189
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.62 E-value=31 Score=32.89 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=28.2
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS 191 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~ 191 (370)
+.+.|..||..+.+. .+.|=||+|...||-+.+..
T Consensus 42 ~FdcCsLtLqPc~dP---vit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDP---VITPDGYLFDREAILEYILA 76 (303)
T ss_pred CcceeeeecccccCC---ccCCCCeeeeHHHHHHHHHH
Confidence 357899999998765 56677999999999887643
No 190
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=31.35 E-value=22 Score=21.77 Aligned_cols=22 Identities=27% Similarity=0.661 Sum_probs=10.8
Q ss_pred ccccccccccCCCeeEEeC-CCCcc
Q 017521 157 TCAICLEDYSVGEKLRILP-CRHKF 180 (370)
Q Consensus 157 ~C~ICLe~~~~~~~v~~lp-C~H~F 180 (370)
.|+-|...+... .+.=| |||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 466666654332 22234 66655
No 191
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=30.18 E-value=69 Score=25.60 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=33.8
Q ss_pred CceEEEEEcC-----CCChHHHHHHHH-HcCCcEEEEeccCCCccee-eccCCCCCceeeEEEEecc
Q 017521 2 SSAFVLTIRG-----GCSFEDKVRNAQ-KAGFEAAIVYDNEDDGVLV-AMAGNSAGIKIHAVFVSKA 61 (370)
Q Consensus 2 ~~~ivLV~RG-----~CsF~~Kv~nAq-~aGA~avIVyn~~~~~~~~-~m~g~~~~i~IpvVfIs~~ 61 (370)
.++|++..+| .|.|-.|++..- +.|...- .+|-.++.... .+..-.....+|.+||...
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~-~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~ 76 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFA-YVNVLEDPEIRQGIKEYSNWPTIPQLYVKGE 76 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEE-EEECCCCHHHHHHHHHHhCCCCCCEEEECCE
Confidence 4678888875 599999998665 4677644 34432221111 1110011236899999744
No 192
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=29.99 E-value=26 Score=26.01 Aligned_cols=36 Identities=17% Similarity=0.421 Sum_probs=17.7
Q ss_pred CCcccccccccccCCC-eeEEeCCCCcccHhHHHHHH
Q 017521 154 TSRTCAICLEDYSVGE-KLRILPCRHKFHAFCVDSWL 189 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~-~v~~lpC~H~FH~~Ci~~Wl 189 (370)
+...|.+|...|..-. +--.--||++|+..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 4578999999996532 11122389999999987544
No 193
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=29.97 E-value=1.1e+02 Score=23.33 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=33.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHc-----CCcEEEEeccCCC----cceeeccCCCCCceeeEEEEe
Q 017521 4 AFVLTIRGGCSFEDKVRNAQKA-----GFEAAIVYDNEDD----GVLVAMAGNSAGIKIHAVFVS 59 (370)
Q Consensus 4 ~ivLV~RG~CsF~~Kv~nAq~a-----GA~avIVyn~~~~----~~~~~m~g~~~~i~IpvVfIs 59 (370)
+|++..+.+|.+=.|++...+. ........|-..+ ..+..+.+. ....+|.+||.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~-~~~~vP~ifi~ 65 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGK-PVETVPQIFVD 65 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCC-CCCcCCEEEEC
Confidence 5788889999999999988776 3333444443322 122222332 11468999985
No 194
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.20 E-value=10 Score=36.52 Aligned_cols=49 Identities=29% Similarity=0.531 Sum_probs=38.5
Q ss_pred CcccccccccccCC-C--eeEEeC--------CCCcccHhHHHHHHhcCCCCCccccccc
Q 017521 155 SRTCAICLEDYSVG-E--KLRILP--------CRHKFHAFCVDSWLTSWRTFCPVCKRDA 203 (370)
Q Consensus 155 ~~~C~ICLe~~~~~-~--~v~~lp--------C~H~FH~~Ci~~Wl~~~~~~CP~CR~~i 203 (370)
...|.||...|... + .-+++. |+|..+..|++.-+.+....||.||...
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~~ 266 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCccccee
Confidence 36799999999843 2 236667 9999999999998877556799998753
No 195
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=29.04 E-value=33 Score=25.95 Aligned_cols=12 Identities=25% Similarity=0.836 Sum_probs=8.9
Q ss_pred ccHhHHHHHHhc
Q 017521 180 FHAFCVDSWLTS 191 (370)
Q Consensus 180 FH~~Ci~~Wl~~ 191 (370)
||..|+..|...
T Consensus 12 FCRNCLskWy~~ 23 (68)
T PF06844_consen 12 FCRNCLSKWYRE 23 (68)
T ss_dssp --HHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 196
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=28.92 E-value=36 Score=33.56 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=32.9
Q ss_pred cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC--CCCCccc
Q 017521 156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW--RTFCPVC 199 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~--~~~CP~C 199 (370)
..|+|=-|.-.+...-..|.|||+.-+.-++..-+.. ...||.|
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 6899877766555566788899999999988854432 2349999
No 197
>PRK10638 glutaredoxin 3; Provisional
Probab=28.76 E-value=79 Score=24.07 Aligned_cols=56 Identities=13% Similarity=0.223 Sum_probs=33.2
Q ss_pred eEEEEEcCCCChHHHHHHHHH-cCCcEEEEeccCCCcceeeccCCCCCceeeEEEEe
Q 017521 4 AFVLTIRGGCSFEDKVRNAQK-AGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVS 59 (370)
Q Consensus 4 ~ivLV~RG~CsF~~Kv~nAq~-aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs 59 (370)
+|.|..+-+|.|-.|++.+-+ .|....++--+++......+........+|++++.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~ 59 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFID 59 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEEC
Confidence 688888999999999997655 67766554222222111111111112468999885
No 198
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=28.48 E-value=84 Score=25.70 Aligned_cols=32 Identities=25% Similarity=0.512 Sum_probs=20.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhhhccccc
Q 017521 84 ENSAWSIMAISFISLLAMSAVLATCFFVRRHR 115 (370)
Q Consensus 84 e~s~~sIm~I~fI~ll~i~~vL~~~~~~~r~r 115 (370)
....|.|++|.++..++.+-+++.++|+.|..
T Consensus 14 sL~PWeIfLItLasVvvavGl~aGLfFcvR~~ 45 (106)
T PF14654_consen 14 SLKPWEIFLITLASVVVAVGLFAGLFFCVRNS 45 (106)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33458888887777666666666555554443
No 199
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=28.30 E-value=1.2e+02 Score=23.29 Aligned_cols=57 Identities=11% Similarity=0.285 Sum_probs=35.4
Q ss_pred eEEEEEcCCCChHHHHHHHHH-cCCcEEEEeccCCCc-ceeeccCCC-CCceeeEEEEec
Q 017521 4 AFVLTIRGGCSFEDKVRNAQK-AGFEAAIVYDNEDDG-VLVAMAGNS-AGIKIHAVFVSK 60 (370)
Q Consensus 4 ~ivLV~RG~CsF~~Kv~nAq~-aGA~avIVyn~~~~~-~~~~m~g~~-~~i~IpvVfIs~ 60 (370)
.|++..+-+|.|=.|++++.+ .|.....+..+.+.. ....|.... ...++|++||..
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~ 61 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGG 61 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECC
Confidence 356666777999999987665 687777665444331 222222211 235689999975
No 200
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=26.93 E-value=1.5e+02 Score=22.38 Aligned_cols=32 Identities=19% Similarity=0.099 Sum_probs=23.1
Q ss_pred EEEEEcCCCChHHHHHHHHHcCCcEEEEeccC
Q 017521 5 FVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNE 36 (370)
Q Consensus 5 ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~ 36 (370)
-|.+.-.+-++..|.+.|.+.|+..+|+.+.+
T Consensus 30 ~v~~d~~~~~~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 30 RVEVDLRNEKLGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred EEEEECCCCCHHHHHHHHHHcCCCEEEEECcc
Confidence 34444334688888999999999988887643
No 201
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.58 E-value=55 Score=26.63 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=28.3
Q ss_pred cccccccccccCCCeeEEeCCCCcccHhHHHHHHh
Q 017521 156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT 190 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~ 190 (370)
..|.||-+....|++....+ .-..|.+|+..=..
T Consensus 7 wkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~ 40 (103)
T COG4847 7 WKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKR 40 (103)
T ss_pred eeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHh
Confidence 57999999999999888888 66689999877433
No 202
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=26.45 E-value=50 Score=26.93 Aligned_cols=10 Identities=40% Similarity=0.780 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 017521 90 IMAISFISLL 99 (370)
Q Consensus 90 Im~I~fI~ll 99 (370)
+.+++|++++
T Consensus 66 i~lls~v~Il 75 (101)
T PF06024_consen 66 ISLLSFVCIL 75 (101)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 203
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=25.93 E-value=28 Score=34.35 Aligned_cols=44 Identities=23% Similarity=0.597 Sum_probs=28.1
Q ss_pred CCcccccccccccCC-----------CeeEEeCCCCc--ccHhHHHHHHhc-----CCCCCcccccc
Q 017521 154 TSRTCAICLEDYSVG-----------EKLRILPCRHK--FHAFCVDSWLTS-----WRTFCPVCKRD 202 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~-----------~~v~~lpC~H~--FH~~Ci~~Wl~~-----~~~~CP~CR~~ 202 (370)
.-.+|++=|..+... +...-|.|||+ +| .|=.+ +...||+||..
T Consensus 289 ~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H-----~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 289 ARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYH-----NWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred cCCCCCcccceeecccccccccccccCCeEEEecccccccc-----ccccccccCcccCcCCeeeee
Confidence 346899988775432 33456789997 44 56443 12349999863
No 204
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=25.79 E-value=91 Score=21.85 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=31.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcce-eeccCCCCCceeeEEEEe
Q 017521 4 AFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVL-VAMAGNSAGIKIHAVFVS 59 (370)
Q Consensus 4 ~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~-~~m~g~~~~i~IpvVfIs 59 (370)
+|+|..+.+|.+-.|++.+.++-.......|-..+... ..+........+|++++.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~ 57 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFIN 57 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEEC
Confidence 47788888999999999766543344444443332211 111111112457888873
No 205
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=25.21 E-value=56 Score=32.77 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhhhccccc
Q 017521 93 ISFISLLAMSAVLATCFFVRRHR 115 (370)
Q Consensus 93 I~fI~ll~i~~vL~~~~~~~r~r 115 (370)
..++.+++++++++++|++.|+|
T Consensus 314 aSiIAIvvIVLIMvIIYLILRYR 336 (353)
T TIGR01477 314 ASIIAILIIVLIMVIIYLILRYR 336 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555555555544
No 206
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=25.08 E-value=48 Score=24.60 Aligned_cols=17 Identities=24% Similarity=0.866 Sum_probs=11.0
Q ss_pred CCCCcccccccccCCCC
Q 017521 193 RTFCPVCKRDARTSTGE 209 (370)
Q Consensus 193 ~~~CP~CR~~i~~~~~~ 209 (370)
+..||+|+..+......
T Consensus 2 k~~CPlCkt~~n~gsk~ 18 (61)
T PF05715_consen 2 KSLCPLCKTTLNVGSKD 18 (61)
T ss_pred CccCCcccchhhcCCCC
Confidence 34599998877554433
No 207
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.87 E-value=38 Score=29.99 Aligned_cols=47 Identities=30% Similarity=0.512 Sum_probs=32.0
Q ss_pred ccccccccCCCeeEEeC-CCCcccHhHHHHHHhcCCCCCcccccccccCCCC
Q 017521 159 AICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 209 (370)
Q Consensus 159 ~ICLe~~~~~~~v~~lp-C~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~ 209 (370)
.||+.--...+..-.-| =.+.||..|-.+-+.+ ||.|..+|...-..
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~~----Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTITS----CPNCSTPIRGDYHV 55 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHHH----CcCCCCCCCCceec
Confidence 46776655444444333 3577999999887665 99999888765443
No 208
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=24.42 E-value=68 Score=24.77 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHcCCcEEEEecc
Q 017521 13 CSFEDKVRNAQKAGFEAAIVYDN 35 (370)
Q Consensus 13 CsF~~Kv~nAq~aGA~avIVyn~ 35 (370)
-.+.+.+..++++||+++++++-
T Consensus 50 ~~~~~~~~~Lk~~GA~~Ilv~pi 72 (75)
T PF08029_consen 50 KQVWDLMDKLKAAGASDILVLPI 72 (75)
T ss_dssp CCHHHHHHHHHCTT-EEEEEEE-
T ss_pred HHHHHHHHHHHHcCCCEEEEEec
Confidence 36889999999999999999863
No 209
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=24.41 E-value=96 Score=35.62 Aligned_cols=55 Identities=22% Similarity=0.448 Sum_probs=35.3
Q ss_pred CcccccccccccC---CCe-eEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCCCC
Q 017521 155 SRTCAICLEDYSV---GEK-LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 209 (370)
Q Consensus 155 ~~~C~ICLe~~~~---~~~-v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~ 209 (370)
...|.||-++... ||. |.+--|+--.|..|.+-=.+..+..||.|+....-.++.
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgs 75 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGS 75 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCC
Confidence 4689999999743 332 222236666899998643344445699998876644433
No 210
>PTZ00046 rifin; Provisional
Probab=24.36 E-value=60 Score=32.67 Aligned_cols=23 Identities=13% Similarity=0.452 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhhhccccc
Q 017521 93 ISFISLLAMSAVLATCFFVRRHR 115 (370)
Q Consensus 93 I~fI~ll~i~~vL~~~~~~~r~r 115 (370)
..++.+++++++++++|++.|+|
T Consensus 319 aSiiAIvVIVLIMvIIYLILRYR 341 (358)
T PTZ00046 319 ASIVAIVVIVLIMVIIYLILRYR 341 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555555555544
No 211
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=24.10 E-value=96 Score=35.53 Aligned_cols=57 Identities=21% Similarity=0.508 Sum_probs=37.7
Q ss_pred CCcccccccccccC---CCe-eEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCCCCC
Q 017521 154 TSRTCAICLEDYSV---GEK-LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEP 210 (370)
Q Consensus 154 ~~~~C~ICLe~~~~---~~~-v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~~ 210 (370)
+...|.||-++... ||. |.+--|+--.|..|.+-=.+..+..||.|+......++.+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~ 74 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCP 74 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCC
Confidence 45789999999643 332 2222366669999996544555556999988776444333
No 212
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=23.90 E-value=1e+02 Score=22.47 Aligned_cols=57 Identities=9% Similarity=0.125 Sum_probs=32.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCc-ceeeccCC-CCCceeeEEEEec
Q 017521 4 AFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDG-VLVAMAGN-SAGIKIHAVFVSK 60 (370)
Q Consensus 4 ~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~-~~~~m~g~-~~~i~IpvVfIs~ 60 (370)
||+|..+-+|.+-.+++.+.+.-......+|-+.+. ....+... .....+|+++|..
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g 59 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGD 59 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECC
Confidence 577888889999999998665433344444433221 11111110 1122689999864
No 213
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=23.87 E-value=88 Score=27.48 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 017521 91 MAISFISLLAMSAVLAT 107 (370)
Q Consensus 91 m~I~fI~ll~i~~vL~~ 107 (370)
|.++++.+++.++++++
T Consensus 31 m~tILiaIvVliiiiiv 47 (189)
T PF05568_consen 31 MYTILIAIVVLIIIIIV 47 (189)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444443333
No 214
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=22.70 E-value=28 Score=35.30 Aligned_cols=51 Identities=25% Similarity=0.514 Sum_probs=0.0
Q ss_pred Cccccccccccc-------------CC---CeeEEeCCCCcccHhHHHHHHhc---C-----CCCCccccccccc
Q 017521 155 SRTCAICLEDYS-------------VG---EKLRILPCRHKFHAFCVDSWLTS---W-----RTFCPVCKRDART 205 (370)
Q Consensus 155 ~~~C~ICLe~~~-------------~~---~~v~~lpC~H~FH~~Ci~~Wl~~---~-----~~~CP~CR~~i~~ 205 (370)
..+|++|+..-. .+ -...--||||+--.....-|-+. + +..||.|-..+..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 579999996511 11 12245689999999999999764 1 2349999777654
No 215
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=22.60 E-value=1.1e+02 Score=30.38 Aligned_cols=47 Identities=28% Similarity=0.707 Sum_probs=29.6
Q ss_pred cccccccccccCCCeeEEeC--CCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521 156 RTCAICLEDYSVGEKLRILP--CRHKFHAFCVDSWLTSWRTFCPVCKRDAR 204 (370)
Q Consensus 156 ~~C~ICLe~~~~~~~v~~lp--C~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~ 204 (370)
..|+||-+.....+ --.+| |++.-|..|...-.. +...||.||.+..
T Consensus 250 ~s~p~~~~~~~~~d-~~~lP~~~~~~~~l~~~~t~~~-~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTD-SNFLPCPCGFRLCLFCHKTISD-GDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccc-cccccccccccchhhhhhcccc-cCCCCCccCCccc
Confidence 68999999874432 23556 566555555554333 4567999995443
No 216
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=22.25 E-value=49 Score=23.01 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=25.0
Q ss_pred Ccccccccccc--cCCCeeEEeCCCCcccHhHHHH
Q 017521 155 SRTCAICLEDY--SVGEKLRILPCRHKFHAFCVDS 187 (370)
Q Consensus 155 ~~~C~ICLe~~--~~~~~v~~lpC~H~FH~~Ci~~ 187 (370)
...|.+|.+.+ .....++-.-|+-..|+.|++.
T Consensus 11 ~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 11 PTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp TEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 46899999998 4456677778999999999765
No 217
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=21.95 E-value=10 Score=27.12 Aligned_cols=37 Identities=32% Similarity=0.620 Sum_probs=20.1
Q ss_pred CcccccccccccCCCeeEEeCCCCcccHhHHHHHHh-cCCCCCccccc
Q 017521 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT-SWRTFCPVCKR 201 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~-~~~~~CP~CR~ 201 (370)
...|+.|-++|...+ | +.|+ .+.=.. .....||+|..
T Consensus 2 ~f~CP~C~~~~~~~~----L-~~H~-----~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS----L-VEHC-----EDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccCHHH----H-HHHH-----HhHCcCCCCCccCCCchh
Confidence 468999988655431 1 3343 222111 12355999965
No 218
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=21.68 E-value=89 Score=25.28 Aligned_cols=31 Identities=26% Similarity=0.626 Sum_probs=22.8
Q ss_pred CcccccccccccCCCeeEEeC--CCCcccHhHHHH
Q 017521 155 SRTCAICLEDYSVGEKLRILP--CRHKFHAFCVDS 187 (370)
Q Consensus 155 ~~~C~ICLe~~~~~~~v~~lp--C~H~FH~~Ci~~ 187 (370)
...|.||... .|--++.-- |...||..|...
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 4689999988 443444444 788999999865
No 219
>PRK03972 ribosomal biogenesis protein; Validated
Probab=21.57 E-value=1.6e+02 Score=27.49 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=29.0
Q ss_pred EEEEcCCCChHHHHHHHHHcCCcEEEEeccCCC
Q 017521 6 VLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDD 38 (370)
Q Consensus 6 vLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~ 38 (370)
..+.||+-++.+-+..|.+.|+..+||.++..+
T Consensus 29 ~~i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg 61 (208)
T PRK03972 29 LYLTRGKKTIQDLLMEAYDRGYERLLIINVWKG 61 (208)
T ss_pred EEEecCCccHHHHHHHHHHCCCCeEEEEecCCC
Confidence 468899999999999999999999999986543
No 220
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=21.55 E-value=95 Score=23.69 Aligned_cols=31 Identities=16% Similarity=0.346 Sum_probs=16.8
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhhhhhcc
Q 017521 82 SFENSAWSIMAISFISLLAMSAVLATCFFVR 112 (370)
Q Consensus 82 ~~e~s~~sIm~I~fI~ll~i~~vL~~~~~~~ 112 (370)
.+.+..|..+.++..+++.++.++.-++|.+
T Consensus 27 ~~sp~qW~aIGvi~gi~~~~lt~ltN~YFK~ 57 (68)
T PF04971_consen 27 QFSPSQWAAIGVIGGIFFGLLTYLTNLYFKI 57 (68)
T ss_pred ccCcccchhHHHHHHHHHHHHHHHhHhhhhh
Confidence 4455567766665555555555555455543
No 221
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.12 E-value=1.1e+02 Score=23.32 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=16.2
Q ss_pred cCCCChHHHHHHHHHcCCcEEEEecc
Q 017521 10 RGGCSFEDKVRNAQKAGFEAAIVYDN 35 (370)
Q Consensus 10 RG~CsF~~Kv~nAq~aGA~avIVyn~ 35 (370)
++. ++..|.+.|.+.|+..+||...
T Consensus 39 ~~~-~l~k~i~~a~~~g~~~~iiiG~ 63 (94)
T cd00861 39 RNE-RPGVKFADADLIGIPYRIVVGK 63 (94)
T ss_pred CCC-CcccchhHHHhcCCCEEEEECC
Confidence 444 6677777777777776666553
No 222
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=20.77 E-value=40 Score=32.79 Aligned_cols=33 Identities=30% Similarity=0.544 Sum_probs=26.8
Q ss_pred CCcccccccccccCCCeeEEeCCCCcccHhHHH
Q 017521 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVD 186 (370)
Q Consensus 154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~ 186 (370)
+...|.||+..-.+.+.+..=-|.--||.-|+.
T Consensus 313 ~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG 345 (381)
T KOG1512|consen 313 SCELCRICLGPVIESEHLFCDVCDRGPHTLCVG 345 (381)
T ss_pred ccHhhhccCCcccchheeccccccCCCCccccc
Confidence 347899999998877777666688899999985
No 223
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=20.62 E-value=1.5e+02 Score=21.83 Aligned_cols=46 Identities=24% Similarity=0.515 Sum_probs=29.1
Q ss_pred cccccccccccCCC-eeEEeCCCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521 156 RTCAICLEDYSVGE-KLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 204 (370)
Q Consensus 156 ~~C~ICLe~~~~~~-~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~ 204 (370)
..|-.|-.++..+. +.++-.=...|+.+|.+.-|.. .||.|--.+.
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~---~CPNCgGelv 52 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLNG---VCPNCGGELV 52 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcC---cCcCCCCccc
Confidence 34777777776553 2332112356999999997643 4999965543
No 224
>PLN02400 cellulose synthase
Probab=20.13 E-value=99 Score=35.56 Aligned_cols=57 Identities=26% Similarity=0.529 Sum_probs=36.5
Q ss_pred CcccccccccccC---CCe-eEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCCCCCC
Q 017521 155 SRTCAICLEDYSV---GEK-LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPP 211 (370)
Q Consensus 155 ~~~C~ICLe~~~~---~~~-v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~~~ 211 (370)
...|.||-++... ||. |.+--|+--.|..|.+-=-+..+..||.||....-.++.|.
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~Kgspr 96 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKGSPR 96 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccCCCC
Confidence 4689999999743 332 23333666689999854223334459999887765554444
No 225
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=20.12 E-value=1.5e+02 Score=23.75 Aligned_cols=60 Identities=23% Similarity=0.318 Sum_probs=34.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHH-cCCcEEEE-eccCCCc-ceeeccCC-CCCceeeEEEEecc
Q 017521 2 SSAFVLTIRGGCSFEDKVRNAQK-AGFEAAIV-YDNEDDG-VLVAMAGN-SAGIKIHAVFVSKA 61 (370)
Q Consensus 2 ~~~ivLV~RG~CsF~~Kv~nAq~-aGA~avIV-yn~~~~~-~~~~m~g~-~~~i~IpvVfIs~~ 61 (370)
+++|++.-+..|.|=.+++.+.+ .|...-++ .+..++. ........ ....++|.+||...
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~ 70 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGK 70 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCE
Confidence 46789999999999999987765 45543332 2222111 11111111 11246899998753
Done!