Query 017523
Match_columns 370
No_of_seqs 174 out of 2031
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 09:20:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 2.4E-41 5.1E-46 319.7 29.2 304 2-314 17-333 (358)
2 PRK11272 putative DMT superfam 100.0 1.2E-33 2.6E-38 262.5 27.3 275 2-312 12-288 (292)
3 PRK11453 O-acetylserine/cystei 100.0 4.4E-33 9.6E-38 259.6 27.3 276 2-312 8-290 (299)
4 PRK11689 aromatic amino acid e 100.0 1.2E-32 2.6E-37 256.2 24.1 279 2-312 8-290 (295)
5 TIGR00950 2A78 Carboxylate/Ami 100.0 3.4E-31 7.4E-36 242.1 24.9 257 10-304 1-259 (260)
6 PRK10532 threonine and homoser 100.0 6.4E-31 1.4E-35 244.3 26.1 269 2-313 16-285 (293)
7 PRK15430 putative chlorampheni 100.0 1.3E-30 2.8E-35 242.7 24.5 272 2-309 12-285 (296)
8 TIGR00817 tpt Tpt phosphate/ph 100.0 7.4E-30 1.6E-34 238.4 23.2 275 8-313 12-297 (302)
9 PF06027 DUF914: Eukaryotic pr 100.0 1.8E-28 3.9E-33 227.4 27.0 290 6-316 21-312 (334)
10 TIGR03340 phn_DUF6 phosphonate 100.0 6.9E-28 1.5E-32 222.8 23.4 270 2-306 5-280 (281)
11 PTZ00343 triose or hexose phos 100.0 5.5E-27 1.2E-31 222.6 25.9 274 8-310 59-349 (350)
12 TIGR00688 rarD rarD protein. T 99.9 3.6E-26 7.9E-31 208.5 23.1 246 2-284 6-255 (256)
13 COG0697 RhaT Permeases of the 99.9 1.7E-23 3.8E-28 193.6 27.5 274 3-310 12-288 (292)
14 KOG4510 Permease of the drug/m 99.9 3.3E-26 7.2E-31 198.2 2.0 279 8-311 47-327 (346)
15 COG5006 rhtA Threonine/homoser 99.9 1.6E-22 3.4E-27 174.4 21.6 269 4-314 18-287 (292)
16 TIGR00776 RhaT RhaT L-rhamnose 99.9 1.2E-21 2.5E-26 181.5 21.1 271 2-309 5-288 (290)
17 COG2962 RarD Predicted permeas 99.9 1.3E-19 2.7E-24 160.7 24.3 277 2-314 11-288 (293)
18 PF08449 UAA: UAA transporter 99.8 1.3E-18 2.8E-23 162.5 26.0 282 11-314 13-302 (303)
19 KOG2765 Predicted membrane pro 99.8 3.5E-20 7.6E-25 168.4 13.9 230 63-311 157-392 (416)
20 KOG2766 Predicted membrane pro 99.8 1.4E-18 3E-23 150.0 8.5 266 14-310 34-300 (336)
21 KOG1441 Glucose-6-phosphate/ph 99.7 6.2E-17 1.3E-21 148.7 14.8 274 13-316 32-314 (316)
22 KOG1580 UDP-galactose transpor 99.6 7.3E-15 1.6E-19 125.7 14.4 226 64-309 85-313 (337)
23 COG2510 Predicted membrane pro 99.6 3.6E-14 7.8E-19 110.3 13.6 135 173-309 5-139 (140)
24 KOG1443 Predicted integral mem 99.6 1.2E-13 2.5E-18 122.9 15.9 273 8-307 22-313 (349)
25 PF00892 EamA: EamA-like trans 99.5 2.1E-14 4.6E-19 115.7 7.8 125 8-142 1-125 (126)
26 KOG1581 UDP-galactose transpor 99.5 2.7E-13 5.8E-18 120.8 15.2 265 26-313 50-317 (327)
27 PF04142 Nuc_sug_transp: Nucle 99.5 8.5E-13 1.8E-17 118.7 16.5 227 60-300 13-244 (244)
28 KOG2234 Predicted UDP-galactos 99.5 1.3E-11 2.9E-16 112.9 24.0 293 2-314 19-327 (345)
29 COG2510 Predicted membrane pro 99.5 6.1E-14 1.3E-18 109.0 7.3 131 3-142 8-138 (140)
30 PF00892 EamA: EamA-like trans 99.4 4E-13 8.6E-18 108.2 9.0 124 181-308 1-125 (126)
31 KOG1444 Nucleotide-sugar trans 99.4 9.4E-11 2E-15 105.9 21.1 273 13-315 27-306 (314)
32 KOG1442 GDP-fucose transporter 99.3 6.3E-12 1.4E-16 110.2 8.6 279 15-317 45-335 (347)
33 PF13536 EmrE: Multidrug resis 99.2 2E-11 4.3E-16 96.9 7.6 106 32-144 2-107 (113)
34 KOG3912 Predicted integral mem 99.2 1.9E-10 4.1E-15 101.3 13.3 280 11-308 16-333 (372)
35 PF03151 TPT: Triose-phosphate 99.2 2.5E-10 5.4E-15 95.6 13.1 138 172-309 1-153 (153)
36 PF06800 Sugar_transport: Suga 99.2 4.1E-09 8.9E-14 94.7 19.8 244 36-306 20-268 (269)
37 TIGR00950 2A78 Carboxylate/Ami 99.2 3.4E-10 7.4E-15 103.3 12.1 127 2-139 132-260 (260)
38 TIGR03340 phn_DUF6 phosphonate 99.1 1.2E-09 2.7E-14 100.9 14.4 134 173-310 3-136 (281)
39 KOG4314 Predicted carbohydrate 99.1 6.9E-10 1.5E-14 93.0 8.9 210 76-310 64-277 (290)
40 PRK15430 putative chlorampheni 99.0 3.7E-09 8.1E-14 98.5 14.0 138 168-309 5-145 (296)
41 TIGR00688 rarD rarD protein. T 99.0 5.6E-09 1.2E-13 95.2 13.4 137 171-309 2-142 (256)
42 PRK10532 threonine and homoser 99.0 8.7E-09 1.9E-13 95.8 13.6 131 2-144 152-282 (293)
43 COG5070 VRG4 Nucleotide-sugar 98.9 5.2E-09 1.1E-13 89.4 9.8 260 28-314 38-301 (309)
44 KOG1582 UDP-galactose transpor 98.9 3.2E-08 6.9E-13 87.1 14.8 227 64-313 106-336 (367)
45 PRK11272 putative DMT superfam 98.9 1.4E-08 3.1E-13 94.4 11.9 132 2-143 154-285 (292)
46 PLN00411 nodulin MtN21 family 98.9 2.9E-08 6.3E-13 94.5 13.0 135 2-145 193-330 (358)
47 PRK13499 rhamnose-proton sympo 98.9 7.1E-07 1.5E-11 83.6 21.4 294 2-310 11-342 (345)
48 PRK02971 4-amino-4-deoxy-L-ara 98.8 4.6E-08 1E-12 78.9 11.5 121 171-312 2-125 (129)
49 PRK11689 aromatic amino acid e 98.8 3.9E-08 8.5E-13 91.5 11.4 128 2-143 160-287 (295)
50 PF05653 Mg_trans_NIPA: Magnes 98.7 1.1E-07 2.4E-12 88.2 11.5 230 66-312 51-295 (300)
51 PF13536 EmrE: Multidrug resis 98.7 5.9E-08 1.3E-12 76.9 8.4 106 206-312 3-109 (113)
52 TIGR00803 nst UDP-galactose tr 98.7 4.4E-08 9.5E-13 87.3 8.2 204 93-307 6-222 (222)
53 PRK11453 O-acetylserine/cystei 98.7 2.9E-07 6.4E-12 85.9 12.8 135 2-142 147-286 (299)
54 KOG1583 UDP-N-acetylglucosamin 98.7 3.6E-07 7.8E-12 80.9 12.3 218 76-308 75-313 (330)
55 TIGR00817 tpt Tpt phosphate/ph 98.6 1.8E-07 3.8E-12 87.5 9.5 137 2-144 149-294 (302)
56 PF03151 TPT: Triose-phosphate 98.6 9.8E-07 2.1E-11 73.6 11.7 132 2-140 4-150 (153)
57 PTZ00343 triose or hexose phos 98.5 3E-06 6.6E-11 80.8 15.5 139 170-309 48-186 (350)
58 PRK15051 4-amino-4-deoxy-L-ara 98.5 1.1E-06 2.4E-11 69.2 8.7 70 67-142 39-108 (111)
59 PRK15051 4-amino-4-deoxy-L-ara 98.4 2E-06 4.3E-11 67.7 9.0 63 246-308 46-108 (111)
60 COG2962 RarD Predicted permeas 98.4 4.2E-06 9.1E-11 75.2 11.5 142 168-311 4-146 (293)
61 COG0697 RhaT Permeases of the 98.3 6.9E-06 1.5E-10 75.7 12.1 128 2-142 158-286 (292)
62 KOG2922 Uncharacterized conser 98.3 3.8E-06 8.2E-11 76.3 9.2 228 66-311 65-308 (335)
63 TIGR00776 RhaT RhaT L-rhamnose 98.2 1.3E-05 2.7E-10 74.5 12.0 123 3-142 157-287 (290)
64 COG4975 GlcU Putative glucose 98.2 4.7E-07 1E-11 78.9 0.3 274 3-309 7-285 (288)
65 PF06027 DUF914: Eukaryotic pr 98.0 3E-05 6.4E-10 72.8 9.8 135 2-144 172-306 (334)
66 PRK02971 4-amino-4-deoxy-L-ara 98.0 5.7E-05 1.2E-09 61.0 10.1 70 67-142 50-121 (129)
67 COG5006 rhtA Threonine/homoser 97.9 7E-05 1.5E-09 65.9 9.2 128 3-141 153-280 (292)
68 PF08449 UAA: UAA transporter 97.9 0.0002 4.3E-09 66.9 12.5 128 182-314 11-141 (303)
69 PRK10452 multidrug efflux syst 97.9 0.00015 3.2E-09 57.6 9.5 66 246-311 39-105 (120)
70 PF04657 DUF606: Protein of un 97.7 0.00061 1.3E-08 55.8 11.7 132 172-306 2-138 (138)
71 PRK09541 emrE multidrug efflux 97.7 0.00048 1E-08 53.9 9.4 66 246-311 39-105 (110)
72 KOG4510 Permease of the drug/m 97.6 2.6E-05 5.6E-10 69.0 1.2 136 168-310 35-170 (346)
73 PF06800 Sugar_transport: Suga 97.6 0.00071 1.5E-08 61.2 10.3 81 235-315 43-128 (269)
74 PRK10650 multidrug efflux syst 97.5 0.0017 3.6E-08 50.7 10.2 63 246-308 44-107 (109)
75 PF05653 Mg_trans_NIPA: Magnes 97.5 0.00046 1E-08 64.2 8.1 120 167-309 3-122 (300)
76 COG2076 EmrE Membrane transpor 97.4 0.0011 2.4E-08 50.9 8.3 65 246-310 39-104 (106)
77 PRK10650 multidrug efflux syst 97.4 0.0016 3.4E-08 50.8 9.3 71 64-141 35-106 (109)
78 PRK13499 rhamnose-proton sympo 97.4 0.0014 3E-08 61.7 10.5 136 168-309 4-153 (345)
79 PRK11431 multidrug efflux syst 97.3 0.0022 4.7E-08 49.7 9.3 64 246-309 38-102 (105)
80 PF00893 Multi_Drug_Res: Small 97.3 0.0017 3.7E-08 49.3 8.1 55 246-300 38-93 (93)
81 COG4975 GlcU Putative glucose 97.3 0.0002 4.4E-09 62.8 3.0 132 172-312 3-139 (288)
82 COG3238 Uncharacterized protei 97.2 0.006 1.3E-07 50.1 10.8 140 169-311 3-148 (150)
83 PRK10452 multidrug efflux syst 97.1 0.00093 2E-08 53.0 5.4 69 70-144 35-104 (120)
84 PRK09541 emrE multidrug efflux 97.1 0.0014 3E-08 51.3 5.8 66 71-142 36-102 (110)
85 PF10639 UPF0546: Uncharacteri 97.0 0.0012 2.7E-08 51.5 5.2 111 3-141 1-112 (113)
86 PF04657 DUF606: Protein of un 97.0 0.0072 1.6E-07 49.5 9.8 124 6-140 9-138 (138)
87 COG2076 EmrE Membrane transpor 96.9 0.0045 9.8E-08 47.6 7.3 62 75-142 40-102 (106)
88 PRK11431 multidrug efflux syst 96.9 0.0073 1.6E-07 46.8 8.2 65 72-142 36-101 (105)
89 PF07857 DUF1632: CEO family ( 96.8 0.002 4.4E-08 57.9 5.1 133 172-315 1-140 (254)
90 PF04142 Nuc_sug_transp: Nucle 96.8 0.0038 8.3E-08 56.3 6.8 68 246-313 26-93 (244)
91 PF10639 UPF0546: Uncharacteri 96.4 0.025 5.4E-07 44.3 8.4 109 178-307 3-112 (113)
92 PF00893 Multi_Drug_Res: Small 96.2 0.022 4.7E-07 43.2 7.0 56 72-133 36-92 (93)
93 KOG2765 Predicted membrane pro 96.2 0.008 1.7E-07 56.1 5.4 138 2-145 251-392 (416)
94 KOG1441 Glucose-6-phosphate/ph 96.1 0.0072 1.6E-07 56.2 4.7 133 3-143 168-307 (316)
95 PF06379 RhaT: L-rhamnose-prot 96.1 0.84 1.8E-05 42.7 17.8 238 62-309 71-340 (344)
96 KOG2234 Predicted UDP-galactos 95.9 0.29 6.2E-06 45.8 14.0 140 171-311 15-166 (345)
97 TIGR00803 nst UDP-galactose tr 94.6 0.095 2.1E-06 46.4 6.6 65 68-139 156-220 (222)
98 COG3238 Uncharacterized protei 94.4 0.58 1.3E-05 38.5 9.9 107 26-141 33-144 (150)
99 KOG2922 Uncharacterized conser 94.1 0.025 5.4E-07 51.9 1.6 125 166-313 16-140 (335)
100 PF07168 Ureide_permease: Urei 94.0 0.041 8.9E-07 50.1 2.6 130 177-308 2-145 (336)
101 PF07857 DUF1632: CEO family ( 93.7 0.86 1.9E-05 41.2 10.6 180 2-194 4-206 (254)
102 KOG4314 Predicted carbohydrate 93.6 0.07 1.5E-06 45.5 3.2 66 249-314 65-130 (290)
103 KOG1580 UDP-galactose transpor 92.9 0.1 2.2E-06 45.8 3.3 73 62-141 239-311 (337)
104 KOG1581 UDP-galactose transpor 92.6 1.3 2.9E-05 40.6 10.0 113 23-143 198-313 (327)
105 KOG1444 Nucleotide-sugar trans 92.1 2.3 5.1E-05 39.3 11.1 124 178-308 15-148 (314)
106 PF06379 RhaT: L-rhamnose-prot 91.5 1.6 3.5E-05 40.9 9.5 140 168-309 4-153 (344)
107 KOG1443 Predicted integral mem 89.4 2.5 5.4E-05 38.9 8.6 125 189-313 34-160 (349)
108 COG5070 VRG4 Nucleotide-sugar 89.3 3 6.5E-05 36.6 8.7 111 25-142 183-295 (309)
109 KOG4831 Unnamed protein [Funct 89.3 3.7 7.9E-05 31.4 8.0 110 2-141 7-123 (125)
110 PRK02237 hypothetical protein; 87.1 3.1 6.7E-05 32.0 6.5 46 267-312 63-108 (109)
111 KOG3912 Predicted integral mem 83.7 1.4 3E-05 40.1 3.7 64 246-309 95-158 (372)
112 PF02694 UPF0060: Uncharacteri 80.7 2.5 5.4E-05 32.5 3.7 44 269-312 63-106 (107)
113 PRK06638 NADH:ubiquinone oxido 80.2 39 0.00085 29.3 12.2 32 278-309 133-166 (198)
114 KOG4831 Unnamed protein [Funct 79.1 4.6 0.0001 30.9 4.6 59 250-308 65-124 (125)
115 TIGR02865 spore_II_E stage II 78.8 22 0.00049 37.7 11.4 26 92-117 11-36 (764)
116 PF10101 DUF2339: Predicted me 78.1 97 0.0021 32.7 28.3 99 10-117 15-116 (745)
117 PRK12650 putative monovalent c 78.0 1.1E+02 0.0025 33.4 22.1 48 64-113 622-669 (962)
118 KOG1442 GDP-fucose transporter 73.6 8.4 0.00018 35.1 5.5 135 4-146 191-330 (347)
119 PF04342 DUF486: Protein of un 72.5 4.3 9.4E-05 31.1 3.0 30 278-307 77-106 (108)
120 PRK02237 hypothetical protein; 72.2 43 0.00094 25.9 8.5 51 86-142 52-104 (109)
121 PF02694 UPF0060: Uncharacteri 71.8 13 0.00027 28.7 5.4 52 85-142 50-102 (107)
122 PF03605 DcuA_DcuB: Anaerobic 71.0 14 0.0003 35.1 6.7 31 105-144 3-34 (364)
123 KOG1582 UDP-galactose transpor 69.0 9.1 0.0002 34.8 4.7 113 24-144 217-333 (367)
124 PF05297 Herpes_LMP1: Herpesvi 68.4 1.6 3.6E-05 39.4 0.0 32 86-117 44-76 (381)
125 PF01102 Glycophorin_A: Glycop 66.5 5.1 0.00011 31.8 2.4 20 294-313 74-93 (122)
126 COG3169 Uncharacterized protei 64.4 16 0.00034 27.7 4.4 31 278-308 84-114 (116)
127 PF03348 Serinc: Serine incorp 59.9 1.8E+02 0.0039 28.6 18.0 55 246-313 253-307 (429)
128 COG1742 Uncharacterized conser 59.0 34 0.00073 26.2 5.5 46 267-312 62-107 (109)
129 KOG2766 Predicted membrane pro 57.0 2.1 4.6E-05 38.4 -1.4 137 168-311 15-152 (336)
130 TIGR00939 2a57 Equilibrative N 54.2 1.5E+02 0.0033 29.2 10.9 12 296-307 181-192 (437)
131 PF05297 Herpes_LMP1: Herpesvi 53.5 4.5 9.8E-05 36.7 0.1 26 246-271 117-142 (381)
132 TIGR00910 2A0307_GadC glutamat 52.0 1E+02 0.0022 31.0 9.5 16 199-214 330-345 (507)
133 PF08507 COPI_assoc: COPI asso 47.6 22 0.00048 28.7 3.3 16 293-308 89-104 (136)
134 PRK13108 prolipoprotein diacyl 46.8 3.1E+02 0.0067 27.3 20.3 23 289-311 254-276 (460)
135 PF03595 SLAC1: Voltage-depend 45.8 1.2E+02 0.0025 28.4 8.4 170 115-307 1-184 (330)
136 COG4858 Uncharacterized membra 45.6 73 0.0016 27.3 6.0 42 64-109 161-202 (226)
137 PF10225 DUF2215: Uncharacteri 45.2 2.3E+02 0.0051 25.5 11.3 57 239-298 100-156 (249)
138 COG1742 Uncharacterized conser 44.6 95 0.0021 23.9 5.9 37 100-142 67-103 (109)
139 PF11044 TMEMspv1-c74-12: Plec 44.1 26 0.00057 22.2 2.4 18 289-306 2-19 (49)
140 PF06679 DUF1180: Protein of u 43.4 22 0.00047 29.9 2.6 7 330-336 138-144 (163)
141 PF03547 Mem_trans: Membrane t 42.6 2E+02 0.0043 27.4 9.6 10 273-282 111-120 (385)
142 PF02487 CLN3: CLN3 protein; 42.2 1.6E+02 0.0034 28.7 8.7 40 97-142 66-107 (402)
143 COG4665 FcbT2 TRAP-type mannit 42.1 2.1E+02 0.0046 24.1 10.6 47 3-50 25-71 (182)
144 PF06570 DUF1129: Protein of u 41.8 2.3E+02 0.0049 24.6 9.0 30 64-94 146-175 (206)
145 PRK09804 putative cryptic C4-d 40.5 1.7E+02 0.0037 29.0 8.5 44 169-213 72-126 (455)
146 KOG1583 UDP-N-acetylglucosamin 40.4 43 0.00093 30.7 4.1 68 250-317 77-145 (330)
147 PF05977 MFS_3: Transmembrane 40.4 4.1E+02 0.0088 26.9 13.4 13 271-283 354-366 (524)
148 COG3086 RseC Positive regulato 38.6 26 0.00056 28.6 2.2 27 258-284 69-95 (150)
149 TIGR00892 2A0113 monocarboxyla 38.3 2.4E+02 0.0052 27.6 9.7 7 296-302 407-413 (455)
150 PF15102 TMEM154: TMEM154 prot 38.1 32 0.00068 28.2 2.7 21 294-314 66-86 (146)
151 KOG1330 Sugar transporter/spin 37.2 2.7E+02 0.0058 27.8 9.3 57 164-220 281-339 (493)
152 PF11139 DUF2910: Protein of u 36.7 2.2E+02 0.0047 24.8 8.1 44 99-142 160-210 (214)
153 PF06946 Phage_holin_5: Phage 36.6 1.6E+02 0.0034 22.2 5.9 53 255-307 22-78 (93)
154 KOG0569 Permease of the major 36.6 4.5E+02 0.0098 26.4 12.8 34 267-300 154-192 (485)
155 PF10669 Phage_Gp23: Protein g 36.5 6 0.00013 29.6 -1.5 35 280-314 9-43 (121)
156 PRK10263 DNA translocase FtsK; 36.3 3.1E+02 0.0068 31.1 10.5 17 99-115 84-100 (1355)
157 COG2271 UhpC Sugar phosphate p 35.8 3E+02 0.0066 27.1 9.3 46 269-315 165-211 (448)
158 PF06570 DUF1129: Protein of u 35.5 2.4E+02 0.0052 24.5 8.1 24 170-193 178-201 (206)
159 COG4657 RnfA Predicted NADH:ub 35.5 2.7E+02 0.0058 23.4 9.5 82 109-216 89-182 (193)
160 PF15330 SIT: SHP2-interacting 34.5 56 0.0012 25.3 3.5 21 293-313 5-26 (107)
161 PF08693 SKG6: Transmembrane a 34.5 34 0.00073 21.4 1.8 19 295-313 21-39 (40)
162 PF11694 DUF3290: Protein of u 34.4 1.9E+02 0.0041 23.9 6.8 29 60-88 45-73 (149)
163 TIGR00893 2A0114 d-galactonate 33.7 3.8E+02 0.0082 24.6 10.3 9 273-281 130-138 (399)
164 PRK10489 enterobactin exporter 33.7 4.3E+02 0.0093 25.2 12.4 19 293-311 382-400 (417)
165 PF04478 Mid2: Mid2 like cell 33.0 51 0.0011 27.2 3.1 13 295-307 58-70 (154)
166 PF15345 TMEM51: Transmembrane 32.9 30 0.00064 30.6 1.9 22 295-316 67-88 (233)
167 PF07698 7TM-7TMR_HD: 7TM rece 32.3 3.1E+02 0.0068 23.2 17.2 25 93-117 59-84 (194)
168 TIGR00881 2A0104 phosphoglycer 32.0 4E+02 0.0087 24.4 10.2 17 181-197 41-57 (379)
169 PRK11902 ampG muropeptide tran 30.4 4.8E+02 0.01 24.8 12.2 15 293-307 372-386 (402)
170 PF04342 DUF486: Protein of un 30.4 2.2E+02 0.0048 22.0 5.9 59 76-140 41-105 (108)
171 MTH00057 ND6 NADH dehydrogenas 29.8 3.6E+02 0.0077 23.1 10.9 32 278-309 132-165 (186)
172 COG4858 Uncharacterized membra 29.7 3.7E+02 0.0079 23.2 7.8 25 238-262 128-153 (226)
173 PF02535 Zip: ZIP Zinc transpo 28.5 4.6E+02 0.01 24.0 12.4 49 171-220 6-55 (317)
174 PRK10435 cadB lysine/cadaverin 28.5 5.6E+02 0.012 24.9 10.9 42 271-314 387-428 (435)
175 PF01350 Flavi_NS4A: Flaviviru 28.4 2.9E+02 0.0064 22.6 6.8 56 252-311 63-118 (144)
176 PF07168 Ureide_permease: Urei 28.2 38 0.00083 31.4 1.9 95 3-99 1-106 (336)
177 PTZ00359 hypothetical protein; 27.6 5.8E+02 0.013 24.8 10.3 48 172-220 228-276 (443)
178 PF02537 CRCB: CrcB-like prote 27.5 2.9E+02 0.0063 21.3 10.6 48 175-222 4-51 (117)
179 TIGR02840 spore_YtaF putative 27.3 99 0.0021 27.0 4.3 45 264-308 34-80 (206)
180 CHL00196 psbY photosystem II p 27.1 1.2E+02 0.0026 18.4 3.2 23 170-192 5-27 (36)
181 COG5202 Predicted membrane pro 26.9 5.7E+02 0.012 24.5 11.3 165 15-218 8-185 (512)
182 PRK09776 putative diguanylate 26.9 8.8E+02 0.019 26.7 15.8 12 101-112 28-39 (1092)
183 COG3086 RseC Positive regulato 26.8 68 0.0015 26.2 2.8 49 85-142 68-121 (150)
184 PRK11195 lysophospholipid tran 26.7 5.6E+02 0.012 24.3 11.7 28 288-315 358-385 (393)
185 PRK10649 hypothetical protein; 26.5 6.7E+02 0.015 25.7 10.7 19 30-48 43-63 (577)
186 PLN00028 nitrate transmembrane 26.2 6E+02 0.013 25.0 10.3 15 294-308 417-431 (476)
187 PRK15049 L-asparagine permease 25.9 4.8E+02 0.01 26.1 9.5 9 270-278 422-430 (499)
188 COG2704 DcuB Anaerobic C4-dica 25.7 3.5E+02 0.0076 26.1 7.6 13 105-117 7-19 (436)
189 TIGR01167 LPXTG_anchor LPXTG-m 24.7 91 0.002 18.1 2.5 18 290-307 11-28 (34)
190 KOG1289 Amino acid transporter 24.4 3.4E+02 0.0073 27.6 7.7 49 261-309 446-509 (550)
191 COG1480 Predicted membrane-ass 23.3 8.8E+02 0.019 25.4 15.4 22 96-117 333-355 (700)
192 PF11295 DUF3096: Protein of u 22.8 1.1E+02 0.0023 19.0 2.5 34 274-307 1-34 (39)
193 PF06298 PsbY: Photosystem II 21.7 1.9E+02 0.0041 17.6 3.4 23 170-192 5-27 (36)
194 PRK15432 autoinducer 2 ABC tra 21.5 4.2E+02 0.0091 25.2 7.7 19 291-309 288-306 (344)
195 PF12794 MscS_TM: Mechanosensi 21.4 7E+02 0.015 23.6 13.8 17 169-185 82-98 (340)
196 PF04246 RseC_MucC: Positive r 20.9 49 0.0011 26.6 1.0 19 265-283 69-87 (135)
197 TIGR00905 2A0302 transporter, 20.9 8.1E+02 0.018 24.1 10.2 114 191-317 323-442 (473)
198 KOG3762 Predicted transporter 20.8 2.5E+02 0.0053 28.8 6.0 9 177-185 410-418 (618)
199 PF01889 DUF63: Membrane prote 20.7 6.6E+02 0.014 23.0 10.5 28 22-49 17-44 (273)
200 PF00689 Cation_ATPase_C: Cati 20.4 4.2E+02 0.0091 22.0 6.9 61 25-87 4-74 (182)
201 KOG0847 Transcription factor, 20.1 1E+02 0.0023 26.9 2.9 24 287-310 196-219 (288)
202 PRK09412 anaerobic C4-dicarbox 20.1 8.4E+02 0.018 24.0 10.4 34 105-146 7-40 (433)
203 COG3476 Tryptophan-rich sensor 20.0 5.3E+02 0.011 21.6 8.3 60 248-307 62-122 (161)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=319.69 Aligned_cols=304 Identities=29% Similarity=0.519 Sum_probs=246.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccc-cccccchHHHHHHHHHHHHHHhHHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSS-YRLSLGLRTFGWLFVASLIGVTANQN 80 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (370)
+|++.+++++++.++.|.+++.|++|..+.++|+.+++++++|++++++|+++ ++ .++|++.++.+.|+++ ++++.
T Consensus 17 ~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~--~~~~~~~~l~l~g~~g-~~~~~ 93 (358)
T PLN00411 17 AMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPP--LSVSILSKIGLLGFLG-SMYVI 93 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCc--chHHHHHHHHHHHHHH-HHHHH
Confidence 68999999999999999999999999999999999999999999877654322 32 2345688999999998 78888
Q ss_pred HHHhhccccchhHHHHhhhhHHHHHHHHHHHh------cccccccccccccceeeehhhhhhhhHHHhhhcCCccccccC
Q 017523 81 AYFEGLYLSSSTVASAMTNLMPAVTFVMAFIA------GWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEF 154 (370)
Q Consensus 81 ~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~------~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~ 154 (370)
+++.|++|++++.++++.++.|++++++++++ ++||++++ |++|++++++|++++...+++.....++
T Consensus 94 ~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~~~~~~~ 167 (358)
T PLN00411 94 TGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPRVFVASS 167 (358)
T ss_pred HHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCcccccccc
Confidence 99999999999999999999999999999999 47777777 9999999999999987655532110000
Q ss_pred CC-----CCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcC-Cccc
Q 017523 155 IP-----PKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEK-NLEA 228 (370)
Q Consensus 155 ~~-----~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~ 228 (370)
.. .+......+..++..|++++++++++||+|++++|+..+++|+....+++++.++++.+.+.....++ +...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~ 247 (358)
T PLN00411 168 PPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSV 247 (358)
T ss_pred cccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 00 00000011223457799999999999999999999999999766677888888888888777776543 2333
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhe
Q 017523 229 WTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVL 308 (370)
Q Consensus 229 ~~~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~ 308 (370)
|.......+..++|.++++.++|.+|++++++.||++++++.+++|+++++++++++||++++.+++|+++|+.|+++..
T Consensus 248 ~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~ 327 (358)
T PLN00411 248 WIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM 327 (358)
T ss_pred ceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 43333334556788888556899999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchh
Q 017523 309 WGKAED 314 (370)
Q Consensus 309 ~~~~~~ 314 (370)
+.|++|
T Consensus 328 ~~~~~~ 333 (358)
T PLN00411 328 WGKANE 333 (358)
T ss_pred hhhhhh
Confidence 876655
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=262.55 Aligned_cols=275 Identities=14% Similarity=0.144 Sum_probs=229.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA 81 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (370)
++++..++||.+++++|.+.++ +||..++++|+.+++++++++...++++ .+ ++|++......|.+....++.+
T Consensus 12 ~~~~~~~iWg~~~~~~K~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~~~~~-~~----~~~~~~~~~~~g~~~~~~~~~~ 85 (292)
T PRK11272 12 ALFALYIIWGSTYLVIRIGVES-WPPLMMAGVRFLIAGILLLAFLLLRGHP-LP----TLRQWLNAALIGLLLLAVGNGM 85 (292)
T ss_pred HHHHHHHHHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----cHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999875 9999999999999999998886553322 11 2356778888898876788889
Q ss_pred HHhhc-cccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcc
Q 017523 82 YFEGL-YLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSL 160 (370)
Q Consensus 82 ~~~al-~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~ 160 (370)
++.+. ++++++.++++.++.|+++.+++++ +|||++++ +++|.+++++|+.++... .
T Consensus 86 ~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~--~------------- 143 (292)
T PRK11272 86 VTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG--G------------- 143 (292)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC--c-------------
Confidence 99999 9999999999999999999999986 69999999 999999999999887421 1
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHH
Q 017523 161 IFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACC 240 (370)
Q Consensus 161 ~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (370)
..+....|++++++++++||.|.+..|+..++ ++...+.+++.++++.+.++....+.+. ...++...|..+
T Consensus 144 ----~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i 215 (292)
T PRK11272 144 ----NLSGNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERL--TALPTLSGFLAL 215 (292)
T ss_pred ----ccccchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCcc--cccCCHHHHHHH
Confidence 11234579999999999999999999997654 3455667888888887777665433221 111234568888
Q ss_pred HHHHH-HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccc
Q 017523 241 LYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKA 312 (370)
Q Consensus 241 l~~gi-~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~ 312 (370)
++.++ ++.++|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|+++|+.|+++..++++
T Consensus 216 ~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 216 GYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999877544
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=100.00 E-value=4.4e-33 Score=259.62 Aligned_cols=276 Identities=16% Similarity=0.206 Sum_probs=217.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA 81 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (370)
.++++.++||.+++++|.+.++ +||.+++++|+.++++.++++. .+++.+ +......|++....++.+
T Consensus 8 ~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~---~~~~~~--------~~~~~~~g~~~~~~~~~~ 75 (299)
T PRK11453 8 LALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFV---ARPKVP--------LNLLLGYGLTISFGQFAF 75 (299)
T ss_pred HHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh---cCCCCc--------hHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999977 9999999999999887665543 111111 223445566554566678
Q ss_pred HHhhccc-cchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcc
Q 017523 82 YFEGLYL-SSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSL 160 (370)
Q Consensus 82 ~~~al~~-~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~ 160 (370)
++.+++| .+++.++++.++.|+++.+++++++|||++++ +++|++++++|++++... ..
T Consensus 76 ~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~~-~~------------- 135 (299)
T PRK11453 76 LFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIED-SL------------- 135 (299)
T ss_pred HHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhccc-cC-------------
Confidence 8889998 58899999999999999999999999999999 999999999999888521 11
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCc--hhHHHHHHHHHHHHHHHHHHHHhcCCc---ccccccchh
Q 017523 161 IFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPN--HSYSSAWMCFLASLESATVALLVEKNL---EAWTLNSFL 235 (370)
Q Consensus 161 ~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~ 235 (370)
+..+....|++++++++++||.|.+++|+..++.++ ......+.+..+.+.........+++. ..+...+..
T Consensus 136 ---~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (299)
T PRK11453 136 ---NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMT 212 (299)
T ss_pred ---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHH
Confidence 112234579999999999999999999998765532 234455666665554444444333321 112233446
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccc
Q 017523 236 ELACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKA 312 (370)
Q Consensus 236 ~~~~~l~~gi-~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~ 312 (370)
.|..++|.++ +++++|.+|.+++++.++.+++.+.+++|+++.+++++++||+++..+++|+++|++|+++..+.++
T Consensus 213 ~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 213 TILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 7889999999 9999999999999999999999999999999999999999999999999999999999999887654
No 4
>PRK11689 aromatic amino acid exporter; Provisional
Probab=100.00 E-value=1.2e-32 Score=256.15 Aligned_cols=279 Identities=14% Similarity=0.074 Sum_probs=211.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA 81 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (370)
.++++.++||.+++..|.+.++ +||..+.++|+.+++++++++. ++ ++.+ |+.++..+.+.++.+.+..+
T Consensus 8 ~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~---~~---~~~~---~~~~~~~~~~~l~~~~~~~~ 77 (295)
T PRK11689 8 IGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV---GF---PRLR---QFPKRYLLAGGLLFVSYEIC 77 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc---cc---cccc---cccHHHHHHHhHHHHHHHHH
Confidence 4678889999999999999877 9999999999999999888753 11 1111 11223344455555788888
Q ss_pred HHhhccc----cchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCC
Q 017523 82 YFEGLYL----SSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPP 157 (370)
Q Consensus 82 ~~~al~~----~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~ 157 (370)
++.+++| ++++.++++.++.|+++.+++++++|||++++ +++|++++++|++++...+ .....
T Consensus 78 ~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~~-~~~~~------ 144 (295)
T PRK11689 78 LALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGGD-NGLSL------ 144 (295)
T ss_pred HHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecCC-ccchh------
Confidence 8888765 57788899999999999999999999999999 9999999999998885321 10000
Q ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHH
Q 017523 158 KSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLEL 237 (370)
Q Consensus 158 ~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 237 (370)
.+...+......|++++++|+++||.|+++.||..++. ++..... ..+.+.+.+..... ++.. ...+...|
T Consensus 145 --~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~~---~~~~~~l~~~~~~~-~~~~--~~~~~~~~ 215 (295)
T PRK11689 145 --AELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLFF---ILTALALWIKYFLS-PQPA--MVFSLPAI 215 (295)
T ss_pred --hhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHHH---HHHHHHHHHHHHHh-cCcc--ccCCHHHH
Confidence 00000111235699999999999999999999988776 4655422 22333333333322 2211 12233567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccc
Q 017523 238 ACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKA 312 (370)
Q Consensus 238 ~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~ 312 (370)
..+++.+++++++|.+|++++|+.++++++.+.+++|+++++++++++||+++..+++|+++|+.|+++..+.++
T Consensus 216 ~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 216 IKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 777787788899999999999999999999999999999999999999999999999999999999999876543
No 5
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=100.00 E-value=3.4e-31 Score=242.13 Aligned_cols=257 Identities=18% Similarity=0.211 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhcccc
Q 017523 10 YAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLS 89 (370)
Q Consensus 10 ~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~ 89 (370)
||.+++..|.+++++.|+....+.|.+.+.+++.++...+ . +.+++.+....|.++..+++.+++.|++|+
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~----~-----~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR----P-----PLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc----c-----CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999998779999999999999988887764332 1 124577888888888899999999999999
Q ss_pred chhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCCch
Q 017523 90 SSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNW 169 (370)
Q Consensus 90 ~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (370)
+++.++++.++.|+++.+++.+++|||++++ +++|++++++|++++... + ..+.+
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~~-~------------------~~~~~ 126 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLSD-G------------------NLSIN 126 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhccC-C------------------ccccc
Confidence 9999999999999999999999999999999 999999999999887521 1 12345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHH-HH
Q 017523 170 LLGCFLLFGSSWFWSFWMILQVPISSSIP-NHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGI-AL 247 (370)
Q Consensus 170 ~~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi-~~ 247 (370)
..|+.++++++++|+.+.+..|+..++.+ ++.....+.+.++.+.+.+.....+++. ..+...|..+++.++ ++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 202 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP----QALSLQWGALLYLGLIGT 202 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC----CcchHHHHHHHHHHHHHH
Confidence 78999999999999999999999887763 2345555778888888777766543321 123456777888888 89
Q ss_pred HHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhh
Q 017523 248 AISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGL 304 (370)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~ 304 (370)
+++|.+|++++++.++.+++.+.+++|+++++++++++||+++..+++|.++++.|+
T Consensus 203 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 203 ALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999886
No 6
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=100.00 E-value=6.4e-31 Score=244.33 Aligned_cols=269 Identities=13% Similarity=0.091 Sum_probs=214.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA 81 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (370)
.++++.++|+.++.+.|.+.++ +||..++++|+++++++++++... +++ + .++|++...+..|++. ...+.+
T Consensus 16 ~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~-~~~---~--~~~~~~~~~~~~g~~~-~~~~~~ 87 (293)
T PRK10532 16 LLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP-WRL---R--FAKEQRLPLLFYGVSL-GGMNYL 87 (293)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH-Hhc---c--CCHHHHHHHHHHHHHH-HHHHHH
Confidence 4788999999999999999988 999999999999999988876422 111 1 1235677788888875 778889
Q ss_pred HHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCccc
Q 017523 82 YFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLI 161 (370)
Q Consensus 82 ~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~ 161 (370)
+++++++++++.++++.++.|+++.+++. |++. +..++.++++|+.++... +.
T Consensus 88 ~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--------~~~~~~i~~~Gv~li~~~-~~-------------- 140 (293)
T PRK10532 88 FYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--------DFVWVVLAVLGLWFLLPL-GQ-------------- 140 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--------HHHHHHHHHHHHheeeec-CC--------------
Confidence 99999999999999999999999988763 4432 455678889999887421 11
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHH
Q 017523 162 FSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCL 241 (370)
Q Consensus 162 ~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 241 (370)
+.......|++++++++++||.|.+..|+..+++ ++... .+...++++.+.++....++. . ..+...|..++
T Consensus 141 --~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~---~-~~~~~~~~~~l 212 (293)
T PRK10532 141 --DVSHVDLTGAALALGAGACWAIYILSGQRAGAEH-GPATV-AIGSLIAALIFVPIGALQAGE---A-LWHWSILPLGL 212 (293)
T ss_pred --CcccCChHHHHHHHHHHHHHHHHHHHHHHHhccC-CchHH-HHHHHHHHHHHHHHHHHccCc---c-cCCHHHHHHHH
Confidence 1122346799999999999999999999988777 46655 456677777666665543221 1 12223455668
Q ss_pred HHHH-HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccch
Q 017523 242 YSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAE 313 (370)
Q Consensus 242 ~~gi-~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~ 313 (370)
|.|+ ++.++|.+|++++++.++++++++.+++|+++.+++++++||+++..+++|+++|++|+....+.+++
T Consensus 213 ~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 213 AVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999 99999999999999999999999999999999999999999999999999999999999888765433
No 7
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.98 E-value=1.3e-30 Score=242.66 Aligned_cols=272 Identities=12% Similarity=0.127 Sum_probs=202.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccc-cchHHHHHHHHHHHHHHhHHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLS-LGLRTFGWLFVASLIGVTANQN 80 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~ 80 (370)
.++++.++||.+++++|.. .+ +||.++.++|++++.++++++...+++.+..+.. .+++++. ....+.++.+.++.
T Consensus 12 ~~l~a~~~wg~~~~~~k~~-~~-~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 88 (296)
T PRK15430 12 LALAAYFIWGIAPAYFKLI-YY-VPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAVSAVLIGGNWL 88 (296)
T ss_pred HHHHHHHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHHHHHHHHHHHH
Confidence 4678889999999999985 44 9999999999999998888776554321110000 1223233 33456666689999
Q ss_pred HHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcc
Q 017523 81 AYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSL 160 (370)
Q Consensus 81 ~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~ 160 (370)
++++|+++++++.++++.++.|+++.+++++++|||++++ +++|++++++|++++....
T Consensus 89 ~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~--------------- 147 (296)
T PRK15430 89 LFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTF--------------- 147 (296)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHc---------------
Confidence 9999999999999999999999999999999999999999 9999999999999885221
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccC-CchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHH
Q 017523 161 IFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSI-PNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELAC 239 (370)
Q Consensus 161 ~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (370)
++ . ..++++++++||.|.+..|+..++. .+....+.+...++.+...+. .......+...+...+..
T Consensus 148 ----~~-~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 215 (296)
T PRK15430 148 ----GS-L----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSHMGQNPMSLNLL 215 (296)
T ss_pred ----CC-c----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCcccccCCcHHHHHH
Confidence 11 1 1468889999999999999875432 122333344444443332111 111111122112222344
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhee
Q 017523 240 CLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLW 309 (370)
Q Consensus 240 ~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~ 309 (370)
+.+.|+.+.++|.+|++++++.++.+++.+.+++|+++.+++++++||++++.+++|+++|+.|+.+...
T Consensus 216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4445557889999999999999999999999999999999999999999999999999999888777643
No 8
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=7.4e-30 Score=238.43 Aligned_cols=275 Identities=13% Similarity=0.098 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhcc
Q 017523 8 FLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLY 87 (370)
Q Consensus 8 ~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~ 87 (370)
++-....+..|.++++-.+|..+++.|+.++.+.+.+... ...+++++ .+++++.+++..|++. +++..+.+.|++
T Consensus 12 ~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~l~ 87 (302)
T TIGR00817 12 FLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLK--ISSALLKLLLPVAIVH-TIGHVTSNVSLS 87 (302)
T ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCC--CCHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4444556788999976467999999999998777655421 11111222 3456799999999997 899999999999
Q ss_pred ccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCC
Q 017523 88 LSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGAD 167 (370)
Q Consensus 88 ~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (370)
|++++.++++.++.|+++.+++++++|||++++ ++.|++++++|+++.. . .+.+
T Consensus 88 ~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~--~------------------~~~~ 141 (302)
T TIGR00817 88 KVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS--D------------------TELS 141 (302)
T ss_pred hccHHHHHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc--C------------------Cccc
Confidence 999999999999999999999999999999999 9999999999997653 1 1122
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCchhHHHHHHHHHHHHHHHHHHHHhcCCcc---cccc----cc-hhHH
Q 017523 168 NWLLGCFLLFGSSWFWSFWMILQVPISS--SIPNHSYSSAWMCFLASLESATVALLVEKNLE---AWTL----NS-FLEL 237 (370)
Q Consensus 168 ~~~~G~~l~l~aa~~~a~~~v~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~----~~-~~~~ 237 (370)
....|++++++|+++||+|.++.||..+ ++ |+...+.+++..+.+.+.++....++... .+.. .. ...+
T Consensus 142 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (302)
T TIGR00817 142 FNWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIY 220 (302)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHH
Confidence 3467999999999999999999999887 66 68999999999999998888776543210 1100 01 0112
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccch
Q 017523 238 ACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAE 313 (370)
Q Consensus 238 ~~~l~~gi-~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~ 313 (370)
...++.+. +....+.++++++++.+|++++++.+++|+++++++++++||+++..+++|+++++.|++++.+.|++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~ 297 (302)
T TIGR00817 221 TVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ 297 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 21223333 33333346668999999999999999999999999999999999999999999999999999875543
No 9
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.97 E-value=1.8e-28 Score=227.40 Aligned_cols=290 Identities=14% Similarity=0.157 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHh
Q 017523 6 LQFLYAGVALFTRVALVQGLS-PRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFE 84 (370)
Q Consensus 6 ~~~~~g~~~~~~k~~~~~g~~-p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (370)
.+++-.+..+.+....+.|.+ |..-.++-++.-+++..++..++++++. .....+++++++++.+++- ...+++...
T Consensus 21 lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~-~~~~~~~~~w~y~lla~~D-v~aN~~~v~ 98 (334)
T PF06027_consen 21 LSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKK-WLKVLKRPWWKYFLLALLD-VEANYLVVL 98 (334)
T ss_pred HHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhcccccc-chhhcchhHHHHHHHHHHH-HHHHHHHHH
Confidence 346677788888887777766 6666777777766666666555443221 1122225588999999998 888999999
Q ss_pred hccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccC
Q 017523 85 GLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSS 164 (370)
Q Consensus 85 al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~ 164 (370)
|++||+.+.++++..++-+++++++++++|+|+++. |++|++++++|+.++...+.... ..+.
T Consensus 99 a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~-----------~~~~ 161 (334)
T PF06027_consen 99 AYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSG-----------SDSS 161 (334)
T ss_pred HhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeeccccc-----------ccCC
Confidence 999999999999999999999999999999999999 99999999999998865543211 0113
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhHHHHHHHH
Q 017523 165 GADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNL-EAWTLNSFLELACCLYS 243 (370)
Q Consensus 165 ~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ 243 (370)
.+++...|++++++|+++||+++++.|+..++. +......+..+++.++..+.....+.+. +..+. +...+..++.-
T Consensus 162 ~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~-~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w-~~~~~~~~v~~ 239 (334)
T PF06027_consen 162 SGSNPILGDLLALLGAILYAVSNVLEEKLVKKA-PRVEFLGMLGLFGFIISGIQLAILERSGIESIHW-TSQVIGLLVGY 239 (334)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHheehhhhhccCC-ChhhHHHHHHH
Confidence 456789999999999999999999999999998 5889999999999999988887666532 22222 22233333333
Q ss_pred HHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchhhH
Q 017523 244 GIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAEDLE 316 (370)
Q Consensus 244 gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~~~ 316 (370)
+++.+.-|.+....++..+|+.+++-..+..+++++++++++|+++++.+++|.++|++|++++...++++.+
T Consensus 240 ~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 240 ALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 3477888888999999999999999999999999999999999999999999999999999999887665443
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.96 E-value=6.9e-28 Score=222.76 Aligned_cols=270 Identities=13% Similarity=0.098 Sum_probs=200.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhh-cccccccccchHHHHHHHHHHHHHHhHHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYIST-RKSSYRLSLGLRTFGWLFVASLIGVTANQN 80 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (370)
+.++++++|+..++..|...++ .++. .+++...++++++|+...+. +..+++ ..++++...+.+.++...++.
T Consensus 5 ~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 5 LVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSR---LPATFWLLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCC---cchhhHHHHHHHHHHHHHHHH
Confidence 4578899999999999976655 4453 47777788888888776542 222221 113344444445555589999
Q ss_pred HHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcc
Q 017523 81 AYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSL 160 (370)
Q Consensus 81 ~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~ 160 (370)
+++.|+++.+++.++.+.++.|+++.+++++++|||++++ +++|+.+++.|++++...+
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~~~--------------- 137 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGLSR--------------- 137 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhccc---------------
Confidence 9999999999999999999999999999999999999999 9999999999999875221
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhH----HHHHHHHHHHHHHHHHHHHhcCCcccccccchhH
Q 017523 161 IFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSY----SSAWMCFLASLESATVALLVEKNLEAWTLNSFLE 236 (370)
Q Consensus 161 ~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 236 (370)
....+..|..++++++++|++|.++.|+..++.+ +.. .+.+.....++...+.....+.. .+. .....
T Consensus 138 ----~~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~ 209 (281)
T TIGR03340 138 ----FAQHRRKAYAWALAAALGTAIYSLSDKAAALGVP-AFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMF-PYARQ 209 (281)
T ss_pred ----ccccchhHHHHHHHHHHHHHHhhhhccccccchh-cccccHHHHHHHHHHHHHHHHHHHHHHhcc--chh-hhHHH
Confidence 1112346888999999999999999998655442 221 22222222212111211111111 111 12234
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhh
Q 017523 237 LACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYV 306 (370)
Q Consensus 237 ~~~~l~~gi-~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l 306 (370)
++.+++.+. ++.++|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|+++|++|+++
T Consensus 210 ~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 210 ILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 556677777 9999999999999999999999999999999999999999999999999999999999875
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.96 E-value=5.5e-27 Score=222.58 Aligned_cols=274 Identities=14% Similarity=0.089 Sum_probs=214.5
Q ss_pred HHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhc
Q 017523 8 FLYAGVALFTRVALVQGLS-PRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGL 86 (370)
Q Consensus 8 ~~~g~~~~~~k~~~~~g~~-p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al 86 (370)
.+-.......|.+++. +| |+.++.+|++++.+++..+.... .+++|+....++++..++..|+++... +...+.|+
T Consensus 59 ~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~llp~gl~~~~~-~~~~~~sl 135 (350)
T PTZ00343 59 ALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATG-FRKIPRIKSLKLFLKNFLPQGLCHLFV-HFGAVISM 135 (350)
T ss_pred HHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3445567788999987 99 99999999999988765543222 222233322234678889999998444 55577999
Q ss_pred cccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCC
Q 017523 87 YLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGA 166 (370)
Q Consensus 87 ~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (370)
++++++.++++..+.|+++++++++++|||++++ ++.+++++++|+++.+.. +.
T Consensus 136 ~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~~--------------------~~ 189 (350)
T PTZ00343 136 GLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASVK--------------------EL 189 (350)
T ss_pred hhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheecc--------------------cc
Confidence 9999999999999999999999999999999999 999999999999997521 12
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhccCC------chhHHHHHHHHHHHHHHHHHHHHhcCCc--cccc----ccch
Q 017523 167 DNWLLGCFLLFGSSWFWSFWMILQVPISSSIP------NHSYSSAWMCFLASLESATVALLVEKNL--EAWT----LNSF 234 (370)
Q Consensus 167 ~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~----~~~~ 234 (370)
+....|++++++|+++||+|+++.|+..++.+ ++.....++...+.+++.|+....+... ..+. ....
T Consensus 190 ~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~ 269 (350)
T PTZ00343 190 HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTN 269 (350)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccc
Confidence 23578999999999999999999999876531 3555666668889988888877554321 1110 0011
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheec
Q 017523 235 LELACCLYSGIALAISFFLQAW----CISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWG 310 (370)
Q Consensus 235 ~~~~~~l~~gi~~~~~~~~~~~----~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~ 310 (370)
..+..+++..+.++++|++|.. ++++++|.+.++..+++|+++++++++++||+++..+++|.++++.|++++.+.
T Consensus 270 ~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 270 YTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 1223345544478999999985 999999999999999999999999999999999999999999999999998764
No 12
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.95 E-value=3.6e-26 Score=208.50 Aligned_cols=246 Identities=12% Similarity=0.057 Sum_probs=180.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccc--cccc-c-chHHHHHHHHHHHHHHhH
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSS--YRLS-L-GLRTFGWLFVASLIGVTA 77 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~--~~~~-~-~~~~~~~~~~~g~~~~~~ 77 (370)
.++++.++||.+++++|. ..+ +||.+++++|++++++++.++...+++++. ++.+ . +.+++..+...|++. ++
T Consensus 6 ~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 82 (256)
T TIGR00688 6 VSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI-GF 82 (256)
T ss_pred HHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH-HH
Confidence 467889999999999998 445 999999999999999888776655433211 1111 1 112244566777774 89
Q ss_pred HHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCC
Q 017523 78 NQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPP 157 (370)
Q Consensus 78 ~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~ 157 (370)
++.+++.|++++++++++++.++.|+++.+++++++|||++++ +++|++++++|++++...+
T Consensus 83 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~------------ 144 (256)
T TIGR00688 83 NWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLK------------ 144 (256)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHc------------
Confidence 9999999999999999999999999999999999999999999 9999999999998875321
Q ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHH
Q 017523 158 KSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLEL 237 (370)
Q Consensus 158 ~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 237 (370)
++ .. .++++++++||.|.+..|+..++. ....... .........+..... ............+|
T Consensus 145 -------~~-~~----~~~l~aa~~~a~~~i~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 208 (256)
T TIGR00688 145 -------GS-LP----WEALVLAFSFTAYGLIRKALKNTD--LAGFCLE-TLSLMPVAIYYLLQT-DFATVQQTNPFPIW 208 (256)
T ss_pred -------CC-ch----HHHHHHHHHHHHHHHHHhhcCCCC--cchHHHH-HHHHHHHHHHHHHHh-ccCcccccCchhHH
Confidence 11 11 357889999999999999975432 2222111 111111211111111 11110111222367
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHH
Q 017523 238 ACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLF 284 (370)
Q Consensus 238 ~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~ 284 (370)
..+++.|+.+.++|.++++++|+.++++++.+.+++|+++.++++++
T Consensus 209 ~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 209 LLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 77777888888999999999999999999999999999999999864
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.93 E-value=1.7e-23 Score=193.64 Aligned_cols=274 Identities=20% Similarity=0.276 Sum_probs=209.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHH
Q 017523 3 MVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAY 82 (370)
Q Consensus 3 ~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (370)
++...+.|+.+....|...+...++....+.|...+.++..+.....+...++. .++.++..+.+.+....++.++
T Consensus 12 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 87 (292)
T COG0697 12 LLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPA----LRPWLLLLLLALLGLALPFLLL 87 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhccccccc----ccchHHHHHHHHHHHHHHHHHH
Confidence 456678999999999998865356666667799998887444332211101111 1114456666666679999999
Q ss_pred HhhccccchhHHHHhhhhHHHHHHHHHH-HhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCccc
Q 017523 83 FEGLYLSSSTVASAMTNLMPAVTFVMAF-IAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLI 161 (370)
Q Consensus 83 ~~al~~~~~~~a~~i~~~~P~~~~lla~-~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~ 161 (370)
+.++++++++.++.+.++.|+++.+++. ++++||++++ ++.|+++++.|++++...+..
T Consensus 88 ~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~-------------- 147 (292)
T COG0697 88 FLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGG-------------- 147 (292)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCc--------------
Confidence 9999999999999999999999999996 7779999999 999999999999998532211
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHH-HHHHHHHHHHHHHHHHhcCCcccccccchhHHHHH
Q 017523 162 FSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSA-WMCFLASLESATVALLVEKNLEAWTLNSFLELACC 240 (370)
Q Consensus 162 ~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (370)
.... ...|+.++++++++||++.+..|+.. +. ++..... +... .............. . .......+..+
T Consensus 148 --~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~-~--~~~~~~~~~~~ 217 (292)
T COG0697 148 --GGIL-SLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL--LALLLLLLFFLSGF-G--APILSRAWLLL 217 (292)
T ss_pred --chhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH--HHHHHHHHHHhccc-c--ccCCHHHHHHH
Confidence 0001 57999999999999999999999987 55 3555554 3333 11111212111111 1 22334567888
Q ss_pred HHHHH-HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheec
Q 017523 241 LYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWG 310 (370)
Q Consensus 241 l~~gi-~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~ 310 (370)
.+.|+ ++++++.++.+++++.++..++.+.+++|+++.+++++++||+++..+++|+++++.|+.+...+
T Consensus 218 ~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 218 LYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 88999 88899999999999999999999999999999999999999999999999999999999998876
No 14
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.92 E-value=3.3e-26 Score=198.16 Aligned_cols=279 Identities=16% Similarity=0.121 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccc-cccccchHHHHHHHHHHHHHHhHHHHHHHhhc
Q 017523 8 FLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSS-YRLSLGLRTFGWLFVASLIGVTANQNAYFEGL 86 (370)
Q Consensus 8 ~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al 86 (370)
..+....++.+..++ .+|+...-.|+++-.++-.|..++++...+ |+ .+..+++++|+.| +.+..+.|+|+
T Consensus 47 ~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~-----g~R~~LiLRg~mG-~tgvmlmyya~ 118 (346)
T KOG4510|consen 47 YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPE-----GKRKWLILRGFMG-FTGVMLMYYAL 118 (346)
T ss_pred HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCC-----CcEEEEEeehhhh-hhHHHHHHHHH
Confidence 344444444444443 689999999977777766665444332221 22 1134578899998 66777778899
Q ss_pred cccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCC
Q 017523 87 YLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGA 166 (370)
Q Consensus 87 ~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (370)
+|.+.++|++|.+++|.||.+++|.++|||.++. ..+|..+.+.|+++++ +++.++.... ++...+..
T Consensus 119 ~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv--RPpFlFG~~t----~g~~~s~~ 186 (346)
T KOG4510|consen 119 MYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV--RPPFLFGDTT----EGEDSSQV 186 (346)
T ss_pred hhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe--cCCcccCCCc----cccccccc
Confidence 9999999999999999999999999999999988 9999999999999986 5554433111 11112233
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-hhHHHHHHHHHH
Q 017523 167 DNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNS-FLELACCLYSGI 245 (370)
Q Consensus 167 ~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~gi 245 (370)
+....|...++.++++.|...++.|++.|+. +....+.+..+++.+..++.....+ .|.+++ ..+|+.++.+|+
T Consensus 187 ~~~~~gt~aai~s~lf~asvyIilR~iGk~~-h~~msvsyf~~i~lV~s~I~~~~ig----~~~lP~cgkdr~l~~~lGv 261 (346)
T KOG4510|consen 187 EYDIPGTVAAISSVLFGASVYIILRYIGKNA-HAIMSVSYFSLITLVVSLIGCASIG----AVQLPHCGKDRWLFVNLGV 261 (346)
T ss_pred cccCCchHHHHHhHhhhhhHHHHHHHhhccc-cEEEEehHHHHHHHHHHHHHHhhcc----ceecCccccceEEEEEehh
Confidence 5567788999999999999999999999988 4766777888888887766655332 245443 457888888999
Q ss_pred HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheecc
Q 017523 246 ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGK 311 (370)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~ 311 (370)
.+++.+.+.+.++++..+..++++.+.+.++|.++++++|||.+++++|.|+++|+.+.+.+...|
T Consensus 262 fgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 262 FGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred hhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998877765443
No 15
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.91 E-value=1.6e-22 Score=174.39 Aligned_cols=269 Identities=15% Similarity=0.096 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHH
Q 017523 4 VALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYF 83 (370)
Q Consensus 4 ~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (370)
+.+++.--....+.|..+.. +.+...+.+|..+++++++++. +.+++ + +.++++..+...|+.. ...+.+||
T Consensus 18 l~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~--RPwr~--r--~~~~~~~~~~~yGvsL-g~MNl~FY 89 (292)
T COG5006 18 LVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALF--RPWRR--R--LSKPQRLALLAYGVSL-GGMNLLFY 89 (292)
T ss_pred HHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHh--hHHHh--c--cChhhhHHHHHHHHHH-HHHHHHHH
Confidence 34444444555688888888 9999999999999999888763 32221 1 2236689999999997 88889999
Q ss_pred hhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCccccc
Q 017523 84 EGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFS 163 (370)
Q Consensus 84 ~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~ 163 (370)
.+++..|.+.+..+.++-|+.+.+++- |.. + ..+.+.+++.|..++.-. + .
T Consensus 90 ~si~riPlGiAVAiEF~GPL~vA~~~s---Rr~---~------d~vwvaLAvlGi~lL~p~-~----------------~ 140 (292)
T COG5006 90 LSIERIPLGIAVAIEFTGPLAVALLSS---RRL---R------DFVWVALAVLGIWLLLPL-G----------------Q 140 (292)
T ss_pred HHHHhccchhhhhhhhccHHHHHHHhc---cch---h------hHHHHHHHHHHHHhheec-c----------------C
Confidence 999999999999999999999887643 222 2 666778889999888522 1 2
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHH
Q 017523 164 SGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYS 243 (370)
Q Consensus 164 ~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (370)
+....+..|..+++.++.||+.|.+..+|..+.. +....+...+.++.++..|+.....++ ....+.....-+..
T Consensus 141 ~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~-~g~~g~a~gm~vAaviv~Pig~~~ag~----~l~~p~ll~laLgv 215 (292)
T COG5006 141 SVWSLDPVGVALALGAGACWALYIVLGQRAGRAE-HGTAGVAVGMLVAALIVLPIGAAQAGP----ALFSPSLLPLALGV 215 (292)
T ss_pred CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccC-CCchHHHHHHHHHHHHHhhhhhhhcch----hhcChHHHHHHHHH
Confidence 3456788999999999999999999999988655 467777888999999998988744322 22223345555778
Q ss_pred HH-HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchh
Q 017523 244 GI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAED 314 (370)
Q Consensus 244 gi-~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~ 314 (370)
++ ++.+.|.+-..++++.++...+.+..++|.++.+.+++++||++|..||+|.++|+.+..-..+..+|+
T Consensus 216 avlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~ 287 (292)
T COG5006 216 AVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP 287 (292)
T ss_pred HHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence 88 999999999999999999999999999999999999999999999999999999999988777755543
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.89 E-value=1.2e-21 Score=181.52 Aligned_cols=271 Identities=13% Similarity=0.095 Sum_probs=202.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA 81 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (370)
..++++++||..++..|... |.++.++. |..++.+++..+....++ |+.+. .+.+..-++.|.+ ...++.+
T Consensus 5 ~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~---~~~~~-~~~~~~g~l~G~~-w~ig~~~ 75 (290)
T TIGR00776 5 IALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVL---PEFWA-LSIFLVGLLSGAF-WALGQIN 75 (290)
T ss_pred HHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhC---Ccccc-cHHHHHHHHHHHH-HHhhhhh
Confidence 45778999999999999975 68888876 788888877666555432 11111 1223334444555 6899999
Q ss_pred HHhhccccchhHHHHhhh-hHHHHHHHHHHHhcccccccccccccce----eeehhhhhhhhHHHhhhcCCccccccCCC
Q 017523 82 YFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVHNRSLRSIAK----ILGTIFCVGGAITMALLKGPKLVNEEFIP 156 (370)
Q Consensus 82 ~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~~~~~~~~~~----~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~ 156 (370)
|+.+.++++++.+..+.+ +.|++..+++.+++|||.+++ + ++|+++.++|++++...++....
T Consensus 76 ~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~~~------ 143 (290)
T TIGR00776 76 QFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKSAG------ 143 (290)
T ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEeccccccc------
Confidence 999999999999999998 888999999999999999988 8 99999999999887543221100
Q ss_pred CCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHH---HHHHHHHHHHHHhcCCcccccccc
Q 017523 157 PKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCF---LASLESATVALLVEKNLEAWTLNS 233 (370)
Q Consensus 157 ~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~ 233 (370)
.+...+...|.+++++++++|+.|.+..|+. ++ ++.+.++.+.. .++++..+.. . +. ..+ .+
T Consensus 144 ------~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~--~-~~-~~~--~~ 208 (290)
T TIGR00776 144 ------IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNLGH--I-LA-KPL--KK 208 (290)
T ss_pred ------cccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHHHH--h-cc-cch--HH
Confidence 0000234779999999999999999999976 35 57777554444 3333222211 1 11 111 22
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh-ccCceeeecchhhHHHHHHHHHHHHhcccchhhhH----hHHHHHHHhhhhhe
Q 017523 234 FLELACCLYSGIALAISFFLQAWCIS-ERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSL----IGAFAVIIGLYVVL 308 (370)
Q Consensus 234 ~~~~~~~l~~gi~~~~~~~~~~~~l~-~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~----~G~~lI~~g~~l~~ 308 (370)
...+..++ .|+..++++.+|..+.+ +.++++.+++...+|+.+++++++++||+.+..++ +|.++|+.|+.+..
T Consensus 209 ~~~~~~~~-~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 209 YAILLNIL-PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 23343444 77767999999999999 99999999999999999999999999999999999 99999999988764
Q ss_pred e
Q 017523 309 W 309 (370)
Q Consensus 309 ~ 309 (370)
.
T Consensus 288 ~ 288 (290)
T TIGR00776 288 I 288 (290)
T ss_pred c
Confidence 4
No 17
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.86 E-value=1.3e-19 Score=160.72 Aligned_cols=277 Identities=12% Similarity=0.065 Sum_probs=222.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccc-cccccchHHHHHHHHHHHHHHhHHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSS-YRLSLGLRTFGWLFVASLIGVTANQN 80 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (370)
..+.+.++||..+...|... + .++.++...|.+-+..+++.+....++.+. ....++.|.+....+.+++- ..++.
T Consensus 11 ~~l~Ay~lwG~lp~y~kll~-~-~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li-~~nW~ 87 (293)
T COG2962 11 LALLAYLLWGLLPLYFKLLE-P-LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI-GLNWW 87 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHc-c-CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH-HHHHH
Confidence 45778999999999999974 3 899999999999999888777665544332 22223335577777777775 99999
Q ss_pred HHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcc
Q 017523 81 AYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSL 160 (370)
Q Consensus 81 ~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~ 160 (370)
.|.+|.+...+-+++.=.+..|++..+++.+++|||+++. |++++.++.+||...+...|+
T Consensus 88 lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g~------------- 148 (293)
T COG2962 88 LFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLGS------------- 148 (293)
T ss_pred HhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcCC-------------
Confidence 9999999999999999999999999999999999999988 999999999999998765432
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHH
Q 017523 161 IFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACC 240 (370)
Q Consensus 161 ~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (370)
-.+ .++.=+++|+.|-.+-|+.. . |+.+....-+..-.+......+..+.+.+.....+...+..+
T Consensus 149 -------lpw----val~la~sf~~Ygl~RK~~~--v-~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LL 214 (293)
T COG2962 149 -------LPW----VALALALSFGLYGLLRKKLK--V-DALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLL 214 (293)
T ss_pred -------CcH----HHHHHHHHHHHHHHHHHhcC--C-chHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHH
Confidence 233 45666789999998877643 3 466666666666666655555544443221222345667777
Q ss_pred HHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchh
Q 017523 241 LYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAED 314 (370)
Q Consensus 241 l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~ 314 (370)
+..|+.+.++..++..+-|+.+-++.+.++|.+|..-.+++++++||+++..+++..+.|-+|+.++.++.-++
T Consensus 215 v~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~ 288 (293)
T COG2962 215 VLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYT 288 (293)
T ss_pred HHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999998765443
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.84 E-value=1.3e-18 Score=162.49 Aligned_cols=282 Identities=13% Similarity=0.077 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHhC-CCC--chhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhcc
Q 017523 11 AGVALFTRVALVQ-GLS--PRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLY 87 (370)
Q Consensus 11 g~~~~~~k~~~~~-g~~--p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~ 87 (370)
..+.++-...... +.. |..+++..++...+...+.....+++..++ +.+..++..+++. .+...+.+.|++
T Consensus 13 ~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~al~ 86 (303)
T PF08449_consen 13 CSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRK-----IPLKKYAILSFLF-FLASVLSNAALK 86 (303)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCc-----ChHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3444555555543 234 888899988888877666554433121121 2366777888886 888999999999
Q ss_pred ccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCC
Q 017523 88 LSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGAD 167 (370)
Q Consensus 88 ~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (370)
|.+...-+++..+.|+++++++.+++|+|.+++ +++++++..+|+++....+...... ......
T Consensus 87 ~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~----------~~~~~~ 150 (303)
T PF08449_consen 87 YISYPTQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSS----------SNSSSF 150 (303)
T ss_pred hCChHHHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccc----------cccccc
Confidence 999999999999999999999999999999999 9999999999999987654332110 011122
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHH--hcCCccc--ccccchhHHHHHHH
Q 017523 168 NWLLGCFLLFGSSWFWSFWMILQVPISSSIP-NHSYSSAWMCFLASLESATVALL--VEKNLEA--WTLNSFLELACCLY 242 (370)
Q Consensus 168 ~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~--~~~~~~~~~~~~l~ 242 (370)
.+..|.++.+++.++.|...+.+++..++++ ++...+++.+.++.+...+.... .+..... +....+..+..++.
T Consensus 151 ~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~ 230 (303)
T PF08449_consen 151 SSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLL 230 (303)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHH
Confidence 3344999999999999999999999887653 46888999999999988777776 2221111 11223334555555
Q ss_pred HHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchh
Q 017523 243 SGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAED 314 (370)
Q Consensus 243 ~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~ 314 (370)
..+++.++.....+.+++.+|...++...++-+++++++++++|+++++.+|+|.++++.|..+..+.|+|+
T Consensus 231 ~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 231 FSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 666778888888899999999999999999999999999999999999999999999999999999877664
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.84 E-value=3.5e-20 Score=168.37 Aligned_cols=230 Identities=14% Similarity=0.141 Sum_probs=189.2
Q ss_pred HHHHHHH-HHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHH
Q 017523 63 TFGWLFV-ASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITM 141 (370)
Q Consensus 63 ~~~~~~~-~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 141 (370)
|..++.+ .+.+ .++.++.+..|+.|++++..+++.+++-+||..++.++..||+++. |++++.+++.|++++
T Consensus 157 ~~ak~sl~fc~l-WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiV 229 (416)
T KOG2765|consen 157 QTAKLSLFFCPL-WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIV 229 (416)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEE
Confidence 4444433 4444 5889999999999999999999999999999999999999999999 999999999999999
Q ss_pred hhhcCCccccccCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC---chhHHHHHHHHHHHHHHHHH
Q 017523 142 ALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIP---NHSYSSAWMCFLASLESATV 218 (370)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~ 218 (370)
+..+...- ++..++....|+++++++|+.||.|.++.||...++. |--.+..+..++..++++|.
T Consensus 230 t~~~s~~~------------~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~ 297 (416)
T KOG2765|consen 230 TMGDSKQN------------SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPP 297 (416)
T ss_pred Eecccccc------------ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHH
Confidence 86643211 1234567799999999999999999999998765552 22333445556666666655
Q ss_pred HHHhcC-CcccccccchhHHHHHHHHHH-HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhH
Q 017523 219 ALLVEK-NLEAWTLNSFLELACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIG 296 (370)
Q Consensus 219 ~~~~~~-~~~~~~~~~~~~~~~~l~~gi-~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G 296 (370)
...... ..+.++.++......++..+. +++++-++|.++.-..+|..++.-..++++.|.+.+.++-|.++++.+++|
T Consensus 298 l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiG 377 (416)
T KOG2765|consen 298 LIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIG 377 (416)
T ss_pred HHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHH
Confidence 443221 344567777777778888888 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhheecc
Q 017523 297 AFAVIIGLYVVLWGK 311 (370)
Q Consensus 297 ~~lI~~g~~l~~~~~ 311 (370)
.+.|.+|.+.++...
T Consensus 378 si~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 378 SIPIFVGFVIVNISS 392 (416)
T ss_pred HHHHHHHHhheeccc
Confidence 999999999998754
No 20
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.76 E-value=1.4e-18 Score=150.03 Aligned_cols=266 Identities=11% Similarity=0.123 Sum_probs=207.8
Q ss_pred HHHHHHHHhCCCC-chhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhccccchh
Q 017523 14 ALFTRVALVQGLS-PRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSST 92 (370)
Q Consensus 14 ~~~~k~~~~~g~~-p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~ 92 (370)
...+......|++ |..-+|..+..-+++..|+..++++ .+..+ |.++++.++.. .-.+++...|.||++.+
T Consensus 34 a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~----~~~~~---~~hYilla~~D-VEaNy~vV~AyQyTsmt 105 (336)
T KOG2766|consen 34 AFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK----YIKAK---WRHYILLAFVD-VEANYFVVKAYQYTSMT 105 (336)
T ss_pred hhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH----HHHHH---HHHhhheeEEe-ecccEEEeeehhhcchH
Confidence 3334444444444 7777888898888999998877552 11111 55688888887 66777888999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCCchHHH
Q 017523 93 VASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLG 172 (370)
Q Consensus 93 ~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 172 (370)
.++.+..-.-..+.+++|+++|.|.++- |+.|+.+|++|++.+++.+-.. + ..+++++...|
T Consensus 106 Si~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sDV~a-g-----------d~aggsnp~~G 167 (336)
T KOG2766|consen 106 SIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSDVHA-G-----------DRAGGSNPVKG 167 (336)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEeeecc-c-----------cccCCCCCccC
Confidence 9999998777777899999999999999 9999999999999987654321 1 13556788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHHHH
Q 017523 173 CFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFF 252 (370)
Q Consensus 173 ~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~~ 252 (370)
+.+.+++|-+||..++..+.+.|+. |...++....++|+++..+-.+.-.+... ...++......+...++.++-|.
T Consensus 168 D~lvi~GATlYaVSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ~i~~~~~~~--tl~w~~~i~~yl~f~L~MFllYs 244 (336)
T KOG2766|consen 168 DFLVIAGATLYAVSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQFIFERHHVS--TLHWDSAIFLYLRFALTMFLLYS 244 (336)
T ss_pred cEEEEecceeeeeccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhhhcccee--eEeehHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 69999999999999999888443222211 11111222222223338888888
Q ss_pred HHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheec
Q 017523 253 LQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWG 310 (370)
Q Consensus 253 ~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~ 310 (370)
+....+|..+++..++-..+.-.++.++ ..||=+.+|...+..+.+..|..++.-+
T Consensus 245 l~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 245 LAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred hhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 8889999999999999999999999998 6778789999999999999999888443
No 21
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.73 E-value=6.2e-17 Score=148.66 Aligned_cols=274 Identities=14% Similarity=0.072 Sum_probs=213.7
Q ss_pred HHHHHHHHHh--CCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhccccc
Q 017523 13 VALFTRVALV--QGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSS 90 (370)
Q Consensus 13 ~~~~~k~~~~--~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~ 90 (370)
..+..|..++ +.--|..++..+...+.+.++....++.++..+ .+ +...+..++..|+.. ++...+.+.+++|.+
T Consensus 32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~-~~-~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~ 108 (316)
T KOG1441|consen 32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSK-IS-SKLPLRTLLPLGLVF-CISHVLGNVSLSYVP 108 (316)
T ss_pred eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCc-cc-cccchHHHHHHHHHH-HHHHHhcchhhhccc
Confidence 3445688887 435588888887777776666554443332222 11 223377888899997 999999999999999
Q ss_pred hhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCCchH
Q 017523 91 STVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWL 170 (370)
Q Consensus 91 ~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (370)
++..+++..+.|+++.++++++.+|+.+.. .+..++..+.|+.+-+.. ..+.++
T Consensus 109 VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~~--------------------e~~fn~ 162 (316)
T KOG1441|consen 109 VSFYQTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASVT--------------------ELSFNL 162 (316)
T ss_pred hhHHHHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeeec--------------------cccccH
Confidence 999999999999999999999999999999 889999988999886532 234679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc--cCC-chhHHHHHHHHHHHHHHH-HHHHHhcCCcc---cccccchhHHHHHHHH
Q 017523 171 LGCFLLFGSSWFWSFWMILQVPISS--SIP-NHSYSSAWMCFLASLESA-TVALLVEKNLE---AWTLNSFLELACCLYS 243 (370)
Q Consensus 171 ~G~~l~l~aa~~~a~~~v~~~~~~~--~~~-~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~---~~~~~~~~~~~~~l~~ 243 (370)
.|.+.++++.+..+..+++.++..+ ++. |++.+..++.-++.+.+. |.....+++.. .....+.. ....++.
T Consensus 163 ~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 241 (316)
T KOG1441|consen 163 FGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILLLN 241 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHHHH
Confidence 9999999999999999999998873 221 789999999999999888 77776655433 11111112 2222333
Q ss_pred HHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchhhH
Q 017523 244 GIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAEDLE 316 (370)
Q Consensus 244 gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~~~ 316 (370)
.++...-....+..+.+++|.+.++.+...-++.++.++++|++++++.+.+|.++.++|++++.+.|.++++
T Consensus 242 sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 242 SVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred HHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3455555666778999999999999999999999999999999999999999999999999999988766543
No 22
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.63 E-value=7.3e-15 Score=125.70 Aligned_cols=226 Identities=14% Similarity=0.089 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhh
Q 017523 64 FGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMAL 143 (370)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 143 (370)
-+.+..++.- ..+.+...+.|+||.|=-...+=.++-|+-+++++.++.+.+.+|+ |..++++.++|+.+. +
T Consensus 85 ~~~YaAcs~s-YLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValF-m 156 (337)
T KOG1580|consen 85 TKMYAACSAS-YLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALF-M 156 (337)
T ss_pred chHHHHHHHH-HHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHh-h
Confidence 4455555555 4888999999999998877777788999999999999999999999 999999999999998 4
Q ss_pred hcCCccccccCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHHh
Q 017523 144 LKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIP-NHSYSSAWMCFLASLESATVALLV 222 (370)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~ 222 (370)
+++.... +..+.....|.++.+++-..-+.....|.++.+.+. ....++++.++.+++.+..-.++.
T Consensus 157 YK~~Kv~------------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfT 224 (337)
T KOG1580|consen 157 YKENKVG------------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFT 224 (337)
T ss_pred ccccccC------------CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheeh
Confidence 5543321 234456789999999999999999999998876652 357788999999998876666644
Q ss_pred cCCcc--cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHH
Q 017523 223 EKNLE--AWTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAV 300 (370)
Q Consensus 223 ~~~~~--~~~~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI 300 (370)
+.-++ -+....+..|+-+...++++++++++.+..+...+|.+.|+...+.-.++++.++++|+++++..||+|..++
T Consensus 225 GElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlV 304 (337)
T KOG1580|consen 225 GELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLV 304 (337)
T ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Confidence 33211 1223455678888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhee
Q 017523 301 IIGLYVVLW 309 (370)
Q Consensus 301 ~~g~~l~~~ 309 (370)
..|+..-..
T Consensus 305 F~aL~~D~~ 313 (337)
T KOG1580|consen 305 FSALTADVV 313 (337)
T ss_pred HHHhhhHhh
Confidence 999887643
No 23
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.59 E-value=3.6e-14 Score=110.27 Aligned_cols=135 Identities=17% Similarity=0.169 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHHHH
Q 017523 173 CFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFF 252 (370)
Q Consensus 173 ~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~~ 252 (370)
.++++++++++++..++.|--.++. ||..-+.....+..+.+..+.+..+ +...........|..++..|+.+++++.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g-~~~~~~~~~~k~~lflilSGla~glswl 82 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTG-NWQAGGEIGPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcC-ceecccccCcceehhhhHHHHHHHHHHH
Confidence 5789999999999999999888877 7999999999998888877777553 3222222255678888889999999999
Q ss_pred HHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhee
Q 017523 253 LQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLW 309 (370)
Q Consensus 253 ~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~ 309 (370)
+|+++++..+++.+..+.-++|+++++++++++||+++..+++|+.+|++|..++..
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 999999999999999999999999999999999999999999999999999887754
No 24
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.56 E-value=1.2e-13 Score=122.93 Aligned_cols=273 Identities=14% Similarity=0.092 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHHhC---CCC-chhHHHHHHHHHHHHHHHHHHHhhccc-ccccccchHHHH-HHHHHHHHHHhHHHHH
Q 017523 8 FLYAGVALFTRVALVQ---GLS-PRVFVVYRQGTAALIMAPIVYISTRKS-SYRLSLGLRTFG-WLFVASLIGVTANQNA 81 (370)
Q Consensus 8 ~~~g~~~~~~k~~~~~---g~~-p~~~~~~R~~~~~l~l~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~g~~~~~~~~~~ 81 (370)
++|=...+..+...+. .++ |..++.+.+++-+++........+++. +.+...++++.+ ++...|+.+ +++..+
T Consensus 22 l~yY~~Si~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat-a~DIGL 100 (349)
T KOG1443|consen 22 LLYYFLSIGLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT-ALDIGL 100 (349)
T ss_pred HHHHHHHHHHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh-hccccc
Confidence 4444444444444332 122 788888887777666554443333322 223344454444 555677776 999999
Q ss_pred HHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCccc
Q 017523 82 YFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLI 161 (370)
Q Consensus 82 ~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~ 161 (370)
.+++++|++.+.-++..+.+++|+.+++.+|.-||+++. -..-+++..+|+++++..
T Consensus 101 SN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~Glflft~K----------------- 157 (349)
T KOG1443|consen 101 SNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFTYK----------------- 157 (349)
T ss_pred ccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEEec-----------------
Confidence 999999999999999999999999999999999999988 455555556666666432
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccC----CchhHHHHHHHHHHHHHHHHHHHHhcCCccc-----cc-c
Q 017523 162 FSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSI----PNHSYSSAWMCFLASLESATVALLVEKNLEA-----WT-L 231 (370)
Q Consensus 162 ~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~-~ 231 (370)
..+.+..|..+.++++++-++--.+.+...++. ++|.+..+..+....+.+.++.+..|+.... |. .
T Consensus 158 ---sTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~ 234 (349)
T KOG1443|consen 158 ---STQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQ 234 (349)
T ss_pred ---ccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhc
Confidence 223567888888777776666555554444332 3688888888888888888888888774322 11 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH---HHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhh
Q 017523 232 NSFLELACCLYSGIALAISFFLQA---WCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVV 307 (370)
Q Consensus 232 ~~~~~~~~~l~~gi~~~~~~~~~~---~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~ 307 (370)
.+...+..+.+.+.++.+++.+.. .-+.+++..+.++.+-..-+.+.++|..+.+|.++...|+|..+...|+...
T Consensus 235 d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 235 DTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 223345555555556666665544 5578899999999999999999999999999999999999999999999988
No 25
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.53 E-value=2.1e-14 Score=115.69 Aligned_cols=125 Identities=24% Similarity=0.396 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhcc
Q 017523 8 FLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLY 87 (370)
Q Consensus 8 ~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~ 87 (370)
++||.+.++.|...++ +||...+++|+.++.+ ++++..+.+++..++ .+.+++......|+++..+++.+++.+++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKN--LSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccC--CChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 4799999999999988 9999999999999998 666666655543222 23355888888888867999999999999
Q ss_pred ccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523 88 LSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA 142 (370)
Q Consensus 88 ~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 142 (370)
+++++.++.+.++.|+++.++++++++|+++++ +++|+++.++|++++.
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999998873
No 26
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.53 E-value=2.7e-13 Score=120.78 Aligned_cols=265 Identities=15% Similarity=0.110 Sum_probs=207.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHH
Q 017523 26 SPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVT 105 (370)
Q Consensus 26 ~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~ 105 (370)
++..+++..-+.+.++-..+. ..++..++ ..+.++.+...++.. .+...+-|.|++|.+=-.-++-..+=-+-+
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l--~~~k~~~~---~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPV 123 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAML--KWWKKELS---GVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPV 123 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHH--hcccccCC---CCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHH
Confidence 577888888888777664433 33322211 114488888888887 888999999999997766667777777778
Q ss_pred HHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCCchHHHHHHHHHHHHHHHH
Q 017523 106 FVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSF 185 (370)
Q Consensus 106 ~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~ 185 (370)
+++..++.+.|.+.. +.+...+.-.|+-+..+.+..+. .+..+.++...|..++...-++-++
T Consensus 124 mlmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~s-----------~~~~g~~ns~~G~~Ll~~~L~fDgf 186 (327)
T KOG1581|consen 124 MLMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSDS-----------SSKSGRENSPIGILLLFGYLLFDGF 186 (327)
T ss_pred HHHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCCC-----------ccccCCCCchHhHHHHHHHHHHHhh
Confidence 899999999999999 88888888899987765533321 1124456788999999999999999
Q ss_pred HHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHHhcCCc--ccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 017523 186 WMILQVPISSSIP-NHSYSSAWMCFLASLESATVALLVEKNL--EAWTLNSFLELACCLYSGIALAISFFLQAWCISERG 262 (370)
Q Consensus 186 ~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~ 262 (370)
.+..|.++-+++. ....+++..++++++....-.+..+... -++...++..+.-++....++.+++.+.++-+++.|
T Consensus 187 Tn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FG 266 (327)
T KOG1581|consen 187 TNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFG 266 (327)
T ss_pred HHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcc
Confidence 9999999887653 5789999999999998876644322211 122334555677777777788999999999999999
Q ss_pred ceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccch
Q 017523 263 PLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAE 313 (370)
Q Consensus 263 ~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~ 313 (370)
+.+.++++.+.-++++.++.+++|++++..||+|..++..|+++-...|++
T Consensus 267 slt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 267 SLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998776655
No 27
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.50 E-value=8.5e-13 Score=118.71 Aligned_cols=227 Identities=15% Similarity=0.138 Sum_probs=166.1
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhH
Q 017523 60 GLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAI 139 (370)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ 139 (370)
++|+.+++.+.+++. ++.+.+.|.++++.+++.-+++.++-.++|++++++++|+|++++ ||+++.+..+|+.
T Consensus 13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~ 85 (244)
T PF04142_consen 13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVV 85 (244)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHh
Confidence 347799999999997 999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHhhhcCCccccccCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHH
Q 017523 140 TMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIP-NHSYSSAWMCFLASLESATV 218 (370)
Q Consensus 140 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~ 218 (370)
++.......... ++....+..........|.++.++++++-++..++.+|..|+.+ +....+......+.+...+.
T Consensus 86 lv~~~~~~~~~~---~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~ 162 (244)
T PF04142_consen 86 LVQLSSSQSSDN---SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLA 162 (244)
T ss_pred eeecCCcccccc---ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 875332221000 00000000112345689999999999999999999999988763 34555556666666666555
Q ss_pred HHHhcCCc-c---cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhH
Q 017523 219 ALLVEKNL-E---AWTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSL 294 (370)
Q Consensus 219 ~~~~~~~~-~---~~~~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~ 294 (370)
....+.+. . -+.-.+...|..+. ...++=.+....+|+.+...=+....+..+++.++++++||.+++....
T Consensus 163 ~~~~~~~~~~~~g~f~G~~~~~~~~i~----~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~ 238 (244)
T PF04142_consen 163 LLLSDGSAISESGFFHGYSWWVWIVIF----LQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFL 238 (244)
T ss_pred HhcccccccccCCchhhcchHHHHHHH----HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHh
Confidence 44332210 0 11111122233222 2333334456688999999999999999999999999999999999999
Q ss_pred hHHHHH
Q 017523 295 IGAFAV 300 (370)
Q Consensus 295 ~G~~lI 300 (370)
+|+.++
T Consensus 239 lg~~~V 244 (244)
T PF04142_consen 239 LGAALV 244 (244)
T ss_pred hheecC
Confidence 998763
No 28
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1.3e-11 Score=112.92 Aligned_cols=293 Identities=14% Similarity=0.115 Sum_probs=208.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHHHHHHHHHHhhcc--cc------cccccchHHHHHHHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQG---LSPRVFVVYRQGTAALIMAPIVYISTRK--SS------YRLSLGLRTFGWLFVA 70 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g---~~p~~~~~~R~~~~~l~l~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~ 70 (370)
.++...+-++......|..-..+ ..|...++.-..+-.++...+.+...|+ ++ +.....+++..++.+.
T Consensus 19 ~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vP 98 (345)
T KOG2234|consen 19 SLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVP 98 (345)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHH
Confidence 35666777888889999987665 6677778887777777766666555322 11 1112223567888888
Q ss_pred HHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccc
Q 017523 71 SLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLV 150 (370)
Q Consensus 71 g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~ 150 (370)
+++. ++.+.++|.++.+.+++..++..++--+.|+++..+++++|++++ ||.++++...|+.++-....+..
T Consensus 99 a~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~~~- 170 (345)
T KOG2234|consen 99 ALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLSPT- 170 (345)
T ss_pred HHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCCCC-
Confidence 8997 888889999999999999999999999999999999999999999 99999999999999852211110
Q ss_pred cccCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 017523 151 NEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIP-NHSYSSAWMCFLASLESATVALLVEKNLEAW 229 (370)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 229 (370)
++.+.....+...|....+.+++.-++..++.+|+.|+-. +.+..+.-..++|.+......+..+.+...|
T Consensus 171 --------~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~ 242 (345)
T KOG2234|consen 171 --------GAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINE 242 (345)
T ss_pred --------CccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 1111234567899999999999999999999999987643 2344445555556555554444333221111
Q ss_pred c----ccchhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhh
Q 017523 230 T----LNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLY 305 (370)
Q Consensus 230 ~----~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~ 305 (370)
. -.+...|..++..++++. +-...+|+.+-..=+....+..+++.+.++.+++.++|....+|..+++.++.
T Consensus 243 ~gff~G~s~~vw~vVl~~a~gGL----lvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~ 318 (345)
T KOG2234|consen 243 YGFFYGYSSIVWLVVLLNAVGGL----LVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIF 318 (345)
T ss_pred CCccccccHHHHHHHHHHhccch----hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Confidence 1 122334555555555222 22334555555555566668889999999999999999999999999999999
Q ss_pred hheeccchh
Q 017523 306 VVLWGKAED 314 (370)
Q Consensus 306 l~~~~~~~~ 314 (370)
++...++++
T Consensus 319 lY~~~P~~~ 327 (345)
T KOG2234|consen 319 LYSLYPARD 327 (345)
T ss_pred HhhcCCccc
Confidence 998555443
No 29
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.50 E-value=6.1e-14 Score=109.01 Aligned_cols=131 Identities=13% Similarity=0.227 Sum_probs=115.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHH
Q 017523 3 MVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAY 82 (370)
Q Consensus 3 ~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (370)
.++++++||...++.|...++ +||..-++.|..+..++++.+.+..++.+.+ -....|.+..+.+.|+.+ .+.+++|
T Consensus 8 ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~-~~~~~k~~lflilSGla~-glswl~Y 84 (140)
T COG2510 8 ALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIFLLIVLLVTGNWQAG-GEIGPKSWLFLILSGLAG-GLSWLLY 84 (140)
T ss_pred HHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHHHHHHHHhcCceecc-cccCcceehhhhHHHHHH-HHHHHHH
Confidence 467899999999999999976 9999999999999999888887776664443 112335588888889776 9999999
Q ss_pred HhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523 83 FEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA 142 (370)
Q Consensus 83 ~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 142 (370)
|.|++...++....+..++|+++.++++++++||++.+ +++|+.+..+|++++.
T Consensus 85 f~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs 138 (140)
T COG2510 85 FRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999999 9999999999998864
No 30
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.44 E-value=4e-13 Score=108.19 Aligned_cols=124 Identities=18% Similarity=0.357 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHH-HHHHHHHHHHHHHh
Q 017523 181 WFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGI-ALAISFFLQAWCIS 259 (370)
Q Consensus 181 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi-~~~~~~~~~~~~l~ 259 (370)
++||.+.+..|+..++. |+...+++++..+.+ ..++....+... ....+...+...++.++ ++++++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 47899999999999998 599999999999998 666666544332 33344456777788888 78999999999999
Q ss_pred ccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhe
Q 017523 260 ERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVL 308 (370)
Q Consensus 260 ~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~ 308 (370)
+.++..++++.+++|+++.+++++++||+++..+++|.++++.|+++..
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764
No 31
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=9.4e-11 Score=105.93 Aligned_cols=273 Identities=11% Similarity=0.026 Sum_probs=203.7
Q ss_pred HHHHHHHHHhCCCCchhHHH--HHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhccccc
Q 017523 13 VALFTRVALVQGLSPRVFVV--YRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSS 90 (370)
Q Consensus 13 ~~~~~k~~~~~g~~p~~~~~--~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~ 90 (370)
+.+..|.++...=-|+.+.. ++++.+.+.+...-..+- -+.++++++. .++.+...++. .++.+.-..+++|.+
T Consensus 27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~l-v~~~~l~~~~--~kk~~P~~~lf-~~~i~t~~~slk~ln 102 (314)
T KOG1444|consen 27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGL-VNFRPLDLRT--AKKWFPVSLLF-VGMLFTGSKSLKYLN 102 (314)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhce-eecCCcChHH--HHHHccHHHHH-HHHHHHccccccccC
Confidence 44566777766333555555 777777665544322211 1124455444 77778888886 888888899999999
Q ss_pred hhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCCchH
Q 017523 91 STVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWL 170 (370)
Q Consensus 91 ~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (370)
+...+++-+.+|+++++....+++.+++.+ .+..+...++|...-... ....+.
T Consensus 103 Vpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~--------------------d~sf~~ 156 (314)
T KOG1444|consen 103 VPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFT--------------------DLSFNL 156 (314)
T ss_pred chHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccc--------------------cceecc
Confidence 999999999999999999999999888877 788888877777665422 222345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHHhcCCc-cccc---ccchhHHHHHHHHHH
Q 017523 171 LGCFLLFGSSWFWSFWMILQVPISSSIP-NHSYSSAWMCFLASLESATVALLVEKNL-EAWT---LNSFLELACCLYSGI 245 (370)
Q Consensus 171 ~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~---~~~~~~~~~~l~~gi 245 (370)
.|..+++...++-+.+.+..|+..+... +.+.++++-++.+.+...+..++++.-. .... ......+..+...++
T Consensus 157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv 236 (314)
T KOG1444|consen 157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCV 236 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHH
Confidence 5899999999999999999998764321 4677888999999998888887664311 0111 122345666777777
Q ss_pred HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchhh
Q 017523 246 ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAEDL 315 (370)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~~ 315 (370)
+++.--++-.++.+..++++.++.+......+.+-..+++|++.++..++|..+-++|-.++.+.+.+++
T Consensus 237 ~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k 306 (314)
T KOG1444|consen 237 MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKK 306 (314)
T ss_pred HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhc
Confidence 6666667788999999999999999888888888888888899999999999999998888887665443
No 32
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=6.3e-12 Score=110.25 Aligned_cols=279 Identities=14% Similarity=0.030 Sum_probs=200.3
Q ss_pred HHHHHHHhCC----CCchhHHHHHHHHHHHHHHHHHHHhhcc----cccccccchHHHHHHHHHHHHHHhHHHHHHHhhc
Q 017523 15 LFTRVALVQG----LSPRVFVVYRQGTAALIMAPIVYISTRK----SSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGL 86 (370)
Q Consensus 15 ~~~k~~~~~g----~~p~~~~~~R~~~~~l~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al 86 (370)
.+.|+.+..- -.|..++.+..++...+...+.....+- ..|+++.+.+....+.-..+.. .+...+-.+.+
T Consensus 45 f~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL 123 (347)
T KOG1442|consen 45 FLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCL 123 (347)
T ss_pred hhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceeh
Confidence 3456555331 2478888888888877666655443332 2255555555455666666664 66666777889
Q ss_pred cccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCC
Q 017523 87 YLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGA 166 (370)
Q Consensus 87 ~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (370)
+|.+++.-.+=-.+.-+|+.+++++++|+|-+.. -..+..+.+.|-.+ |.+-. +..+
T Consensus 124 ~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~l-----GvdqE------------~~~~ 180 (347)
T KOG1442|consen 124 KYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFF------ALGCCLLIILGFGL-----GVDQE------------GSTG 180 (347)
T ss_pred hhcceEEEEeccchhhhHHHHhHHhhcccccccc------cceeehhheehhee-----ccccc------------cccC
Confidence 9999998888888999999999999999999888 45554444444332 21100 1234
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhccCCc-hhHHHHHHHHHHHHHHHHHHHHhcCCccccc---ccchhHHHHHHH
Q 017523 167 DNWLLGCFLLFGSSWFWSFWMILQVPISSSIPN-HSYSSAWMCFLASLESATVALLVEKNLEAWT---LNSFLELACCLY 242 (370)
Q Consensus 167 ~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~ 242 (370)
.-.+.|.+++..|.++-|+..+..|+......| -+.++++.++.+.+.+.|+..+.+.-...+. .+...-|..+..
T Consensus 181 ~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtL 260 (347)
T KOG1442|consen 181 TLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTL 260 (347)
T ss_pred ccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHH
Confidence 567899999999999999999999976544323 5778889999999999888885543212222 223344555566
Q ss_pred HHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchhhHH
Q 017523 243 SGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAEDLEE 317 (370)
Q Consensus 243 ~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~~~~ 317 (370)
.|++++..-+...+=+|.++|.+-++-....-..-.++++.+++|.-+..-|-|-++|++|...+.+.|..|.++
T Consensus 261 sglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~ 335 (347)
T KOG1442|consen 261 SGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK 335 (347)
T ss_pred HHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence 666444444444566899999999999999999999999999999999999999999999999999987666544
No 33
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.25 E-value=2e-11 Score=96.91 Aligned_cols=106 Identities=22% Similarity=0.339 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHH
Q 017523 32 VYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFI 111 (370)
Q Consensus 32 ~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~ 111 (370)
.+|+..+.+++..+...++|.+......+.|++.+....|+++...++.++++|+++.+ +.++++.++.|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 57999999998888777544322111122244677778888886699999999999999 58889999999999999999
Q ss_pred hcccccccccccccceeeehhhhhhhhHHHhhh
Q 017523 112 AGWEKVHNRSLRSIAKILGTIFCVGGAITMALL 144 (370)
Q Consensus 112 ~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~ 144 (370)
++|||++++ +++|++++++|++++...
T Consensus 81 ~~~er~~~~------~~~a~~l~~~Gv~li~~~ 107 (113)
T PF13536_consen 81 FFKERLSPR------RWLAILLILIGVILIAWS 107 (113)
T ss_pred HhcCCCCHH------HHHHHHHHHHHHHHHhhh
Confidence 999999999 999999999999999644
No 34
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.23 E-value=1.9e-10 Score=101.33 Aligned_cols=280 Identities=13% Similarity=0.090 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHh---CCCC----chhHHHHHHHHHHHHHHHHHHHhhcccccc-----------cccchHHHHHHHHHHH
Q 017523 11 AGVALFTRVALV---QGLS----PRVFVVYRQGTAALIMAPIVYISTRKSSYR-----------LSLGLRTFGWLFVASL 72 (370)
Q Consensus 11 g~~~~~~k~~~~---~g~~----p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~ 72 (370)
..+.+.+|.+-+ +|.| |+.....-++.-+++++.+.+++.|...+. .+.+.+ ....+.-++
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~-p~lfl~Pal 94 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFN-PVLFLPPAL 94 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCC-cceecChHH
Confidence 345667777542 3333 555555555555788888777776533210 000111 122344677
Q ss_pred HHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccc
Q 017523 73 IGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNE 152 (370)
Q Consensus 73 ~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~ 152 (370)
+- ..+..++|.|+.+++++.-+++-...-+|+.+++.-+++.++..+ ||+|+....+|++.+...+-....+
T Consensus 95 ~D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d~~~~~~- 166 (372)
T KOG3912|consen 95 CD-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLDVHLVTD- 166 (372)
T ss_pred HH-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeeecccccC-
Confidence 77 667788889999999999999999999999999999999999999 9999999999998875331110000
Q ss_pred cCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHHhcCCc-c-cc
Q 017523 153 EFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIP-NHSYSSAWMCFLASLESATVALLVEKNL-E-AW 229 (370)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~-~~ 229 (370)
+-..-++...|+++.+++-+.-|+.+++-+|..+++. +|.....|..++|.+++..++.....-+ . .+
T Consensus 167 ---------p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sf 237 (372)
T KOG3912|consen 167 ---------PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSF 237 (372)
T ss_pred ---------CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcC
Confidence 0122346789999999999999999999988776542 5899999999999777666555221100 0 01
Q ss_pred cc---cchhHH------------HHHHHHHH-HHHHH-HHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhh
Q 017523 230 TL---NSFLEL------------ACCLYSGI-ALAIS-FFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMG 292 (370)
Q Consensus 230 ~~---~~~~~~------------~~~l~~gi-~~~~~-~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~ 292 (370)
.. ....+| ..+...|. .+..- -+.-....|..++++=.++-.+...+-=+++.....|.++..
T Consensus 238 S~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll 317 (372)
T KOG3912|consen 238 SCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL 317 (372)
T ss_pred cCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH
Confidence 10 000111 12222222 11111 111123456677777788888888888888888999999999
Q ss_pred hHhHHHHHHHhhhhhe
Q 017523 293 SLIGAFAVIIGLYVVL 308 (370)
Q Consensus 293 ~~~G~~lI~~g~~l~~ 308 (370)
|+.|..+.+.|+.++.
T Consensus 318 qilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 318 QILGFLILIMGIILYN 333 (372)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999984
No 35
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.21 E-value=2.5e-10 Score=95.56 Aligned_cols=138 Identities=17% Similarity=0.163 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc------CCchhHHHHHHHHHHHHHHHHHHHHhcCCccccc---cc------chhH
Q 017523 172 GCFLLFGSSWFWSFWMILQVPISSS------IPNHSYSSAWMCFLASLESATVALLVEKNLEAWT---LN------SFLE 236 (370)
Q Consensus 172 G~~l~l~aa~~~a~~~v~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~------~~~~ 236 (370)
|.+++++|.++.|++.++.|+..++ ..++..+..+....+.+.+.+..++.+....... .. ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6789999999999999999987655 3379999999999999999999887765431111 10 2244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhee
Q 017523 237 LACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLW 309 (370)
Q Consensus 237 ~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~ 309 (370)
+..++..|+..+......++.+++.+|.+.++.+.+..+..++++++++||+++..+++|.++.+.|.+++.|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 5555666667778888889999999999999999999999999999999999999999999999999988764
No 36
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.18 E-value=4.1e-09 Score=94.74 Aligned_cols=244 Identities=17% Similarity=0.145 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhh-hHHHHHHHHHHHhcc
Q 017523 36 GTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGW 114 (370)
Q Consensus 36 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~ 114 (370)
.++++++....+...+ |.++.+.+.++..++.|++ ..+.+...|.++++..++.+..+.. ++-+.+.+++.++++
T Consensus 20 t~Gali~alv~~~~~~---p~~~~~~~~~~~~~lsG~~-W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fg 95 (269)
T PF06800_consen 20 TIGALIFALVVFLFRQ---PAFSMSGTSFIVAFLSGAF-WAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFG 95 (269)
T ss_pred HHHHHHHHHHHHHHhC---CCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcC
Confidence 3444444444444333 3443323447777777887 4999999999999999999999986 666678899999999
Q ss_pred cccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017523 115 EKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPIS 194 (370)
Q Consensus 115 E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~ 194 (370)
|--+... -..-.+++++.++|+.+....++.+.. .+.+.+...|....+++.+.|..|.++.|..
T Consensus 96 EW~~~~~--~~~G~~Al~liiiGv~lts~~~~~~~~------------~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~- 160 (269)
T PF06800_consen 96 EWTTTTQ--KIIGFLALVLIIIGVILTSYQDKKSDK------------SSSKSNMKKGILALLISTIGYWIYSVIPKAF- 160 (269)
T ss_pred CCCCcch--HHHHHHHHHHHHHHHHHhccccccccc------------cccccchhhHHHHHHHHHHHHHHHHHHHHhc-
Confidence 9886551 000123566777787776544332110 1124466789999999999999999998863
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHH
Q 017523 195 SSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCT 274 (370)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~p 274 (370)
+. |+....+-+ .++.++...+.....++ ..+. ...|.. +..|+...++-.++..+.++.|....=.+.-+.+
T Consensus 161 -~~-~~~~~~lPq-aiGm~i~a~i~~~~~~~-~~~~---k~~~~n-il~G~~w~ignl~~~is~~~~G~a~af~lSQ~~v 232 (269)
T PF06800_consen 161 -HV-SGWSAFLPQ-AIGMLIGAFIFNLFSKK-PFFE---KKSWKN-ILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGV 232 (269)
T ss_pred -CC-ChhHhHHHH-HHHHHHHHHHHhhcccc-cccc---cchHHh-hHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHH
Confidence 34 566665544 33333333332222111 1111 112222 4466667788888999999999999999999999
Q ss_pred HHHHHHHHHHhcccchhh----hHhHHHHHHHhhhh
Q 017523 275 VIVTVLAGLFLDEEIFMG----SLIGAFAVIIGLYV 306 (370)
Q Consensus 275 v~a~~~~~~~~~e~~~~~----~~~G~~lI~~g~~l 306 (370)
+++.+.+.+++||+=+.. .++|.++|+.|..+
T Consensus 233 vIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 233 VISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 999999999999987765 35688888887654
No 37
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.16 E-value=3.4e-10 Score=103.26 Aligned_cols=127 Identities=16% Similarity=0.213 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLSP--RVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQ 79 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~p--~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (370)
..+.++++|+.+.+..|...++ .++ ..+..+|+.++.+++.++.+..++.. . .+.+++..++..|+++..+.+
T Consensus 132 ~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~ 206 (260)
T TIGR00950 132 LGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPNP--Q--ALSLQWGALLYLGLIGTALAY 206 (260)
T ss_pred HHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCCC--C--cchHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999998865 664 45555789999999888876644322 1 133557778888888878999
Q ss_pred HHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhH
Q 017523 80 NAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAI 139 (370)
Q Consensus 80 ~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ 139 (370)
.+++.++++.+++.++.+.++.|+++.++++++++|+++.. +++|..+.+.|++
T Consensus 207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~~ 260 (260)
T TIGR00950 207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999 9999999988863
No 38
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.13 E-value=1.2e-09 Score=100.94 Aligned_cols=134 Identities=16% Similarity=0.132 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHHHH
Q 017523 173 CFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFF 252 (370)
Q Consensus 173 ~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~~ 252 (370)
.++.++++++||.+++..|+..++.+ +. ..+.+..+++...++..... ....|.......+..++..+++....+.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYL-AQVGWSRLPATFWLLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhc-ccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 46789999999999999998777653 43 35555666666655554321 1123444343444444555557888899
Q ss_pred HHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheec
Q 017523 253 LQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWG 310 (370)
Q Consensus 253 ~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~ 310 (370)
++.+++++.++..++++.+++|+++.+++++++||+++..+++|.++++.|+++..+.
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999887653
No 39
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.07 E-value=6.9e-10 Score=93.01 Aligned_cols=210 Identities=18% Similarity=0.169 Sum_probs=152.0
Q ss_pred hHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCC
Q 017523 76 TANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFI 155 (370)
Q Consensus 76 ~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~ 155 (370)
.+.++.|..+++..+++.++.+..+...|+.+++++.+++|+... |+++.++++.|++++...+
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~D---------- 127 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYAD---------- 127 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEecc----------
Confidence 678899999999999999999999999999999999999999999 9999999999999986432
Q ss_pred CCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccC--CchhHHHHHHHHHHHHH-H-HHHHHHhcCCcccccc
Q 017523 156 PPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSI--PNHSYSSAWMCFLASLE-S-ATVALLVEKNLEAWTL 231 (370)
Q Consensus 156 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~i~-~-~~~~~~~~~~~~~~~~ 231 (370)
......+.|..++..++...|+|-++-|+..... .|....+.-..++...+ . .++.+... ..++|+.
T Consensus 128 --------N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T-~VE~~qs 198 (290)
T KOG4314|consen 128 --------NEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFT-GVEHLQS 198 (290)
T ss_pred --------chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHh-chHHHHH
Confidence 2233568999999999999999999999876543 22222222222222221 1 12222221 2233442
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheec
Q 017523 232 NSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWG 310 (370)
Q Consensus 232 ~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~ 310 (370)
-....|..+...+.-+..--++...++....|...|+-.....+--...+.++-+-..+.....|.++|+.|..+....
T Consensus 199 FA~~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP 277 (290)
T KOG4314|consen 199 FAAAPWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIP 277 (290)
T ss_pred HhhCCchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecc
Confidence 2222355554333322223344557888889999999999999999999998777778888999999999998887653
No 40
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.05 E-value=3.7e-09 Score=98.47 Aligned_cols=138 Identities=12% Similarity=0.161 Sum_probs=109.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCccccc--ccchhHHHHHHHHHH
Q 017523 168 NWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWT--LNSFLELACCLYSGI 245 (370)
Q Consensus 168 ~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~gi 245 (370)
+...|.+++++++++|+...+..|.. .+. ++....++++.++.+...++..... +..... ......+...+ .+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~-~~~~~~~~R~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYV-PADEILTHRVIWSFFFMVVLMSICR-QWSYLKTLIQTPQKIFMLA-VSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHcCHHHHHHHH-HHH
Confidence 56789999999999999999999875 567 5999999999999887766554332 111110 01122232223 444
Q ss_pred -HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhee
Q 017523 246 -ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLW 309 (370)
Q Consensus 246 -~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~ 309 (370)
+.+..+.++++++++.++..++++.++.|+++.+++++++||+++..+++|.++.++|+.+..+
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999999999999999999999999999999988753
No 41
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.01 E-value=5.6e-09 Score=95.20 Aligned_cols=137 Identities=12% Similarity=0.157 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCc---cccccc-chhHHHHHHHHHHH
Q 017523 171 LGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNL---EAWTLN-SFLELACCLYSGIA 246 (370)
Q Consensus 171 ~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~~~~~~~l~~gi~ 246 (370)
.|.++.++++++|+...+..|.. .+. ++....+++++++++.+.+......+.. ..+... ....+......|+.
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-ccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 47889999999999999999984 457 6999999999999887666554332210 111111 11223445556666
Q ss_pred HHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhee
Q 017523 247 LAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLW 309 (370)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~ 309 (370)
.++.+.++++++++.++..++.+.++.|+++.+++++++||+++..+++|.++.++|+.+...
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999999999999999999999999999887643
No 42
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.98 E-value=8.7e-09 Score=95.84 Aligned_cols=131 Identities=14% Similarity=0.061 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA 81 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (370)
+.+.++++|+.+.+..|...++ .++..... -.+++.+++.|+...... ... .+...+...+..|+++..+.+.+
T Consensus 152 l~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~~--~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 152 LALGAGACWAIYILSGQRAGAE-HGPATVAI-GSLIAALIFVPIGALQAG--EAL--WHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-CCchHHHH-HHHHHHHHHHHHHHHccC--ccc--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999998765 78877654 456667777777655332 111 12222545677888888899999
Q ss_pred HHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhh
Q 017523 82 YFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALL 144 (370)
Q Consensus 82 ~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~ 144 (370)
|++++++.+++.++.+.++.|+++.++++++++|+++.. +++|..+.++|+++....
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999 999999999999988654
No 43
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.95 E-value=5.2e-09 Score=89.44 Aligned_cols=260 Identities=11% Similarity=0.072 Sum_probs=174.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHH
Q 017523 28 RVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFV 107 (370)
Q Consensus 28 ~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~l 107 (370)
+.+.+.+.+...+-++.+-..+--+.| .++....+..+++- ....+.--.++||.++..-++..+++-+.++.
T Consensus 38 flll~vQSlvcvv~l~iLk~l~~~~fR------~t~aK~WfpiSfLL-v~MIyt~SKsLqyL~vpiYTiFKNltII~iAy 110 (309)
T COG5070 38 FLLLAVQSLVCVVGLLILKFLRLVEFR------LTKAKKWFPISFLL-VVMIYTSSKSLQYLAVPIYTIFKNLTIILIAY 110 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHhhee------hhhhhhhcCHHHHH-HHHHHhcccceeeeeeeHHHHhccceeehhHh
Confidence 445566666655544443322211111 12233334455554 56667778899999999999999999999999
Q ss_pred HHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHH
Q 017523 108 MAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWM 187 (370)
Q Consensus 108 la~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 187 (370)
.-..+++.|++-- ....-++.+..-++-...+.+.. .........|.+++...++.-+.|.
T Consensus 111 gEvl~Fgg~vtsl------~l~SFilMvlSS~va~w~D~q~~-------------~~~~~~lN~GY~Wm~~NclssaafV 171 (309)
T COG5070 111 GEVLFFGGRVTSL------ELLSFILMVLSSVVATWGDQQAS-------------AFKAQILNPGYLWMFTNCLSSAAFV 171 (309)
T ss_pred hHHHHhcCccchh------hHHHHHHHHHHHHHhccchhhHH-------------HHHhcccCCceEEEehhhHhHHHHH
Confidence 9999998888655 34333333332222211111100 0111234567788899999999999
Q ss_pred HHHHHhhc--cCCchhHHHHHHHHHHHHHHHHHHHHhcCCccc-cc-ccchhHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 017523 188 ILQVPISS--SIPNHSYSSAWMCFLASLESATVALLVEKNLEA-WT-LNSFLELACCLYSGIALAISFFLQAWCISERGP 263 (370)
Q Consensus 188 v~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~ 263 (370)
...|+..+ ++ .....++|.++.+..++..+.++++...+. .. ..+...+.++...|++++.--++-.|+++.++.
T Consensus 172 L~mrkri~ltNf-~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSS 250 (309)
T COG5070 172 LIMRKRIKLTNF-KDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSS 250 (309)
T ss_pred HHHHHhhccccc-chhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhh
Confidence 99887543 23 356778999999999999988877542111 11 112234566777888777677788999999999
Q ss_pred eeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchh
Q 017523 264 LFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAED 314 (370)
Q Consensus 264 ~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~ 314 (370)
++-++.+.+.-.-..+-|.++|+|+.+..++....+=..+-.++...|.++
T Consensus 251 TtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k 301 (309)
T COG5070 251 TTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKK 301 (309)
T ss_pred hHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988887666555565555443
No 44
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.95 E-value=3.2e-08 Score=87.13 Aligned_cols=227 Identities=11% Similarity=0.106 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhh
Q 017523 64 FGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMAL 143 (370)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 143 (370)
+..+..++.+. ...+.+...++.|.+=-.-.+...+--+-+.+.+.++-+.|..+. ...+..+...|.++.++
T Consensus 106 ~rtY~~la~~t-~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~------d~~aA~lm~lGli~FTL 178 (367)
T KOG1582|consen 106 WRTYVILAFLT-VGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVH------DYIAAMLMSLGLIWFTL 178 (367)
T ss_pred hhHhhhhHhhh-hhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHH------HHHHHHHHHHHHHhhhh
Confidence 44455556664 667778888888875444445555555556677888888888777 89999999999999987
Q ss_pred hcCCccccccCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHHh
Q 017523 144 LKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIP-NHSYSSAWMCFLASLESATVALLV 222 (370)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~ 222 (370)
.+.. -.+..+..|..+.-.|-++-|.---+|++..+.+| ....+.++...+|.+..+..+...
T Consensus 179 ADs~----------------~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlT 242 (367)
T KOG1582|consen 179 ADSQ----------------TSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLT 242 (367)
T ss_pred cccc----------------cCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhc
Confidence 7654 23446788998888888899998889998887765 245666777888888777766656
Q ss_pred cCCcccccc---cchhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHH
Q 017523 223 EKNLEAWTL---NSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFA 299 (370)
Q Consensus 223 ~~~~~~~~~---~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~l 299 (370)
+.-.+.|.. .+........+....+.++...-..-++..|+..+.+.....-.+++++++++|..++|....-|..+
T Consensus 243 ge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gll 322 (367)
T KOG1582|consen 243 GELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLL 322 (367)
T ss_pred ccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHH
Confidence 554455542 12223333344444566666666677889999999999999999999999999999999999999999
Q ss_pred HHHhhhhheeccch
Q 017523 300 VIIGLYVVLWGKAE 313 (370)
Q Consensus 300 I~~g~~l~~~~~~~ 313 (370)
|+.|+++-.+.|+.
T Consensus 323 v~lgI~Ln~ysk~n 336 (367)
T KOG1582|consen 323 VVLGIYLNMYSKRN 336 (367)
T ss_pred HHHHHHhhcccCCC
Confidence 99999999887743
No 45
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.90 E-value=1.4e-08 Score=94.37 Aligned_cols=132 Identities=14% Similarity=0.049 Sum_probs=108.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA 81 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (370)
..++++++|+.+.+..|...+. ++....+++..++.+.+.++........ ....+.+++..+...|+++..+.+.+
T Consensus 154 ~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~l~i~~s~~~~~l 229 (292)
T PRK11272 154 LILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERL--TALPTLSGFLALGYLAVFGSIIAISA 229 (292)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCcc--cccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999996432 4566778888888888888765433211 11122355778888899887899999
Q ss_pred HHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhh
Q 017523 82 YFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMAL 143 (370)
Q Consensus 82 ~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 143 (370)
|+.++++.+++.++.+.++.|+++.++++++++|++++. +++|.++.+.|++++..
T Consensus 230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 99999999999988854
No 46
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.87 E-value=2.9e-08 Score=94.45 Aligned_cols=135 Identities=7% Similarity=0.014 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHHHHHHHHHHhhccccc--ccccchHHHHHHHHHHHHHHhHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLSP-RVFVVYRQGTAALIMAPIVYISTRKSSY--RLSLGLRTFGWLFVASLIGVTAN 78 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~p-~~~~~~R~~~~~l~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~ 78 (370)
+++.++++|+.+.++.|..... .++ ...+++...++.+.+.+......+...+ ....... ...++..|+. ..+.
T Consensus 193 l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~-t~la 269 (358)
T PLN00411 193 LLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII-TSVY 269 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH-HHHH
Confidence 3567889999999999998776 555 4556676776666665555554432111 1111221 2234445554 3678
Q ss_pred HHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhc
Q 017523 79 QNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLK 145 (370)
Q Consensus 79 ~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~ 145 (370)
+.++++++++.+++.++...++.|+++.++++++++|++++. +++|.++.+.|+.+....+
T Consensus 270 y~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 270 YVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhh
Confidence 889999999999999999999999999999999999999999 9999999999999986543
No 47
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.85 E-value=7.1e-07 Score=83.55 Aligned_cols=294 Identities=13% Similarity=-0.009 Sum_probs=174.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHHHHHHH--HHHhhcccccccc-cchHHHHHHHHHHHHHHh
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLS--PRVFVVYRQGTAALIMAPI--VYISTRKSSYRLS-LGLRTFGWLFVASLIGVT 76 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~--p~~~~~~R~~~~~l~l~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~ 76 (370)
..+++.++||..++-.|.. ++ .+ .++.+ -.+++.++ .|+ ..+..+.....+. .+.+.+...++.|++= .
T Consensus 11 ~~~i~~~~~GS~~~p~K~~-k~-w~wE~~W~v--~gi~~wl~-~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~W-~ 84 (345)
T PRK13499 11 WHLIGGASSGSFYAPFKKV-KK-WSWETMWSV--GGIFSWLI-LPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGALW-G 84 (345)
T ss_pred HHHHHHHHhhccccccccc-CC-CchhHHHHH--HHHHHHHH-HHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHHH-H
Confidence 3567889999999999993 33 33 22221 11122111 121 1111111111111 1224466777777774 9
Q ss_pred HHHHHHHhhccccchhHHHHhhh-hHHHHHHHHHHHhcccccc-cccccccceeeehhhhhhhhHHHhhhcCCccccccC
Q 017523 77 ANQNAYFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVH-NRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEF 154 (370)
Q Consensus 77 ~~~~~~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~-~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~ 154 (370)
..+..++.++++..++.+..+.. ++-++..++..++++|=.+ ..+..+..-.+|+++.++|+++........-
T Consensus 85 iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~----- 159 (345)
T PRK13499 85 IGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE----- 159 (345)
T ss_pred hhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc-----
Confidence 99999999999999999998886 7888899999999886430 0111233467788888999988875211100
Q ss_pred CCCCcccccCCCCchHHHHHHHHHHHHHHHHHH-------HHHHHhh-ccCCchhHHHHHHHH---HHHHHHHHHHHH--
Q 017523 155 IPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWM-------ILQVPIS-SSIPNHSYSSAWMCF---LASLESATVALL-- 221 (370)
Q Consensus 155 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~-------v~~~~~~-~~~~~~~~~~~~~~~---~~~i~~~~~~~~-- 221 (370)
+.. .++...+.+...|.++++++.+.++.|+ ...+... .+. ++.....-+.. .+..+...+-..
T Consensus 160 -~~~-~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~-~~~~~~lp~~~~~~~G~~~~n~~~~~~~ 236 (345)
T PRK13499 160 -RKM-GIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGV-DPLYAALPSYVVIMGGGAITNLGFCFIR 236 (345)
T ss_pred -ccc-ccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000234577899999999999999999 4444321 122 33333333332 344333221111
Q ss_pred --hcCCccccccc--c----hhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeec---ch-hhHHHHHHHHHHHHhcccc
Q 017523 222 --VEKNLEAWTLN--S----FLELACCLYSGIALAISFFLQAWCISERGPLFCAM---FN-PLCTVIVTVLAGLFLDEEI 289 (370)
Q Consensus 222 --~~~~~~~~~~~--~----~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~---~~-~l~pv~a~~~~~~~~~e~~ 289 (370)
..++....... + ..........|+...++.++|..+-++.+...... +. .+..+++.+.+. ++||+=
T Consensus 237 ~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K 315 (345)
T PRK13499 237 LAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWK 315 (345)
T ss_pred HhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhcc
Confidence 11221111111 1 22333345566677888888888888886665544 44 777799999999 599976
Q ss_pred h------hhhHhHHHHHHHhhhhheec
Q 017523 290 F------MGSLIGAFAVIIGLYVVLWG 310 (370)
Q Consensus 290 ~------~~~~~G~~lI~~g~~l~~~~ 310 (370)
+ ...++|.+++++|..+...+
T Consensus 316 ~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 316 GASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 6 45688999999998887554
No 48
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.84 E-value=4.6e-08 Score=78.91 Aligned_cols=121 Identities=14% Similarity=0.105 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHH-HHHH
Q 017523 171 LGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGI-ALAI 249 (370)
Q Consensus 171 ~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi-~~~~ 249 (370)
.|.++.+.+.++-+..+++.|+-.++.+ ....... . . ...... .+ ....++.|+ +.++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~-~----~-~~~~~~---~~-----------p~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWD-F----I-AALLAF---GL-----------ALRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhH-H----H-HHHHHH---hc-----------cHHHHHHHHHHHHH
Confidence 3678889999999999999998877764 2221111 0 0 000000 00 112466788 9999
Q ss_pred HHHHHHHHHhccCceeeecchhhHHHHHHHHHHH--HhcccchhhhHhHHHHHHHhhhhheeccc
Q 017523 250 SFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGL--FLDEEIFMGSLIGAFAVIIGLYVVLWGKA 312 (370)
Q Consensus 250 ~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~--~~~e~~~~~~~~G~~lI~~g~~l~~~~~~ 312 (370)
++.+|.+++++.+.+.+..+..+.+++..+.++. +|||++++.+++|.++|++|++++.+.++
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999999999998888888885 89999999999999999999999876443
No 49
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.80 E-value=3.9e-08 Score=91.54 Aligned_cols=128 Identities=14% Similarity=0.111 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA 81 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (370)
+++.++++|+.+.++.|...++ .++....+ ..+.+.+.+...... . . ....+.+.+..++..|+. ..+.+.+
T Consensus 160 ~~l~aa~~~A~~~v~~k~~~~~-~~~~~~~~---~~~~~~l~~~~~~~~-~-~-~~~~~~~~~~~l~~~~~~-t~~~~~l 231 (295)
T PRK11689 160 LAFIGAFIWAAYCNVTRKYARG-KNGITLFF---ILTALALWIKYFLSP-Q-P-AMVFSLPAIIKLLLAAAA-MGFGYAA 231 (295)
T ss_pred HHHHHHHHHHHHHHHHhhccCC-CCchhHHH---HHHHHHHHHHHHHhc-C-c-cccCCHHHHHHHHHHHHH-HHHHHHH
Confidence 4678899999999999998654 77765532 233334433333322 1 1 122333447677777754 4889999
Q ss_pred HHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhh
Q 017523 82 YFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMAL 143 (370)
Q Consensus 82 ~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 143 (370)
|+.++++.+++.++.+.++.|++..++++++++|+++.. +++|.++.+.|+++...
T Consensus 232 ~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 232 WNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence 999999999999999999999999999999999999999 99999999999988753
No 50
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.73 E-value=1.1e-07 Score=88.23 Aligned_cols=230 Identities=13% Similarity=0.126 Sum_probs=131.6
Q ss_pred HHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhc
Q 017523 66 WLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLK 145 (370)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~ 145 (370)
+.++.|++.+.++..+.+.|+.+.|++..+.+....-++..+++..+++||++++ .+.|+.+++.|..++....
T Consensus 51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIFA 124 (300)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEeC
Confidence 4566677777888899999999999999999999999999999999999999999 9999999999998876543
Q ss_pred CCccccccCCCCCccc-ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHH-------HH
Q 017523 146 GPKLVNEEFIPPKSLI-FSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLES-------AT 217 (370)
Q Consensus 146 ~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~-------~~ 217 (370)
+.+.+.. +.+.. ..-.+..+..-..+. .. +...+.....+|..++ +.........++++... ..
T Consensus 125 ~~~~~~~----t~~~l~~~~~~~~fl~y~~~~-~~-~~~~L~~~~~~r~g~~--~i~vyi~i~sl~Gs~tvl~~K~i~~~ 196 (300)
T PF05653_consen 125 PKEEPIH----TLDELIALLSQPGFLVYFILV-LV-LILILIFFIKPRYGRR--NILVYISICSLIGSFTVLSAKAISIL 196 (300)
T ss_pred CCCCCcC----CHHHHHHHhcCcceehhHHHH-HH-HHHHHHHhhcchhccc--ceEEEEEEeccccchhhhHHHHHHHH
Confidence 2211000 00000 000011111111111 11 1122222222222222 11111111111111110 01
Q ss_pred HHHHhcCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHH-HHHHHHHHHhccc--chh---
Q 017523 218 VALLVEKNLEAWTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTV-IVTVLAGLFLDEE--IFM--- 291 (370)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv-~a~~~~~~~~~e~--~~~--- 291 (370)
+.....++ ....++..|..++...++...-....++++++.+++.+..+.+..=. .+++-+.++++|. ++.
T Consensus 197 i~~~~~g~---~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~ 273 (300)
T PF05653_consen 197 IKLTFSGD---NQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQI 273 (300)
T ss_pred HHHHhcCc---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHH
Confidence 11111111 12222333444443433556666667789999999999888876544 4555566677864 333
Q ss_pred -hhHhHHHHHHHhhhhheeccc
Q 017523 292 -GSLIGAFAVIIGLYVVLWGKA 312 (370)
Q Consensus 292 -~~~~G~~lI~~g~~l~~~~~~ 312 (370)
....|..+++.|+++....|.
T Consensus 274 ~~~~~G~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 274 IGFLCGFLIIIIGVFLLSSSKD 295 (300)
T ss_pred HHHHHHHHHHHHhhheeeccCc
Confidence 345688889999998876543
No 51
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.72 E-value=5.9e-08 Score=76.88 Aligned_cols=106 Identities=13% Similarity=0.293 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHH-HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHH
Q 017523 206 WMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLF 284 (370)
Q Consensus 206 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi-~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~ 284 (370)
+...++.+..........+..+.+.......+...+..|+ +...++.++.+++++.++ .++.+..+.|+++.++++++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544322111122222233444555566 556899999999999995 88899999999999999999
Q ss_pred hcccchhhhHhHHHHHHHhhhhheeccc
Q 017523 285 LDEEIFMGSLIGAFAVIIGLYVVLWGKA 312 (370)
Q Consensus 285 ~~e~~~~~~~~G~~lI~~g~~l~~~~~~ 312 (370)
++|+++...++|.+++.+|+.+..+.+.
T Consensus 82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 82 FKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999988553
No 52
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.71 E-value=4.4e-08 Score=87.33 Aligned_cols=204 Identities=12% Similarity=0.051 Sum_probs=126.7
Q ss_pred HHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccc---------cccCCCCCccccc
Q 017523 93 VASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLV---------NEEFIPPKSLIFS 163 (370)
Q Consensus 93 ~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~---------~~~~~~~~~~~~~ 163 (370)
......+..++++++..+.+.++|.... |++++.+...|++...+.+.+... ..+.++ +.+..
T Consensus 6 a~~~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~--~~~~~ 77 (222)
T TIGR00803 6 IHIIFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQ--SSAKT 77 (222)
T ss_pred chHHHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCC--CCccc
Confidence 3456677889999999999999999877 999999988888764333221100 000000 00000
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCch-hHHHHHHHHHHHHHHHHHHHHhcCCc-cccc--ccchhHHHH
Q 017523 164 SGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNH-SYSSAWMCFLASLESATVALLVEKNL-EAWT--LNSFLELAC 239 (370)
Q Consensus 164 ~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~--~~~~~~~~~ 239 (370)
......+.|....+.+.++-+...+.+++..++.... ........+++.+...........+. ..+. ...+...+.
T Consensus 78 ~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (222)
T TIGR00803 78 LMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWI 157 (222)
T ss_pred cccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHH
Confidence 1123557788888888888888888888876654211 11122222222222111111111110 1111 111111112
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhh
Q 017523 240 CLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVV 307 (370)
Q Consensus 240 ~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~ 307 (370)
..+...+...+..+.+|+.++...++...++++++.++++++|||+++..+++|+.+++.|++++
T Consensus 158 ---~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 158 ---VGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred ---HHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 22234556667889999999999999999999999999999999999999999999999997753
No 53
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.67 E-value=2.9e-07 Score=85.86 Aligned_cols=135 Identities=13% Similarity=0.138 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHHHHHHHHHHhhcccc---cccccchHHHHHHHHHHHHHHh
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLS--PRVFVVYRQGTAALIMAPIVYISTRKSS---YRLSLGLRTFGWLFVASLIGVT 76 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~--p~~~~~~R~~~~~l~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~ 76 (370)
..+.++++|+.+.++.|...++.-+ .....++-.+++.+.+.......+.... +....+.+++..++..|++...
T Consensus 147 l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~ 226 (299)
T PRK11453 147 LTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATI 226 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHH
Confidence 4678899999999999997654212 2233344444444333333333222110 0012233558888889999989
Q ss_pred HHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523 77 ANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA 142 (370)
Q Consensus 77 ~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 142 (370)
+.+.+++.++++.+++.++.+..+.|++..++++++++|+++.. +++|..+.++|+++..
T Consensus 227 ~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 227 VGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999 9999999999998764
No 54
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.67 E-value=3.6e-07 Score=80.86 Aligned_cols=218 Identities=12% Similarity=0.094 Sum_probs=147.0
Q ss_pred hHHHHHHHhhcccc-chhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccC
Q 017523 76 TANQNAYFEGLYLS-SSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEF 154 (370)
Q Consensus 76 ~~~~~~~~~al~~~-~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~ 154 (370)
...+.+-++++++- +.-.=.++-.-.++.++++++++++.|.+.+ |...+++.-+|+++.++.+.++... ..
T Consensus 75 F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~~~-~~ 147 (330)
T KOG1583|consen 75 FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDGRS-KL 147 (330)
T ss_pred eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhhhhheeEEeecCcchhh-hh
Confidence 33445556677663 3344445556789999999999999999999 9999999999999988765553322 00
Q ss_pred CCCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHHhcCC-cccccc-
Q 017523 155 IPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIP-NHSYSSAWMCFLASLESATVALLVEKN-LEAWTL- 231 (370)
Q Consensus 155 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~- 231 (370)
..-++++.......|..|..+...+-+.-|...+.++..-+++. ++-..+++.=..+...+.. ..++ .++|..
T Consensus 148 ~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf----~~~div~~~~~~ 223 (330)
T KOG1583|consen 148 SGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLF----MGDDIVSHWRLA 223 (330)
T ss_pred cccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHH----hcchHHHHHHHH
Confidence 01112222334456788998888888888888888876655442 4556666666555543332 2221 111211
Q ss_pred -------------cchhHHHHHHHHHHHHHHHHHHHHHH----HhccCceeeecchhhHHHHHHHHHHHHhcccchhhhH
Q 017523 232 -------------NSFLELACCLYSGIALAISFFLQAWC----ISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSL 294 (370)
Q Consensus 232 -------------~~~~~~~~~l~~gi~~~~~~~~~~~~----l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~ 294 (370)
.-+..|+.++... +.++.-.++ -.+.++.++++...+.-.+..+++.+.|.+++++..|
T Consensus 224 ~~se~~~~p~~g~~vP~~~~yLl~n~----L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~ 299 (330)
T KOG1583|consen 224 FKSESYLIPLLGFKVPSMWVYLLFNV----LTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHW 299 (330)
T ss_pred hcCcceeccccCccccHHHHHHHHHH----HHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHH
Confidence 1123455544333 333333333 4567888999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhhe
Q 017523 295 IGAFAVIIGLYVVL 308 (370)
Q Consensus 295 ~G~~lI~~g~~l~~ 308 (370)
+|++++..|..++.
T Consensus 300 lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 300 LGAALVFFGTLLFA 313 (330)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988874
No 55
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.61 E-value=1.8e-07 Score=87.48 Aligned_cols=137 Identities=14% Similarity=0.156 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHHHHHHHHHHhhcccc-c-cc-c----cchHHHHH-HHHHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQ-GLSPRVFVVYRQGTAALIMAPIVYISTRKSS-Y-RL-S----LGLRTFGW-LFVASL 72 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~-g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~-~-~~-~----~~~~~~~~-~~~~g~ 72 (370)
..++++++|+...+..|...++ +.||..+.++.+..+++.++|+....+.... + .. . ......+. .+..+.
T Consensus 149 ~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (302)
T TIGR00817 149 SAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAM 228 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHH
Confidence 4677899999999999998762 3899999999999999999998776442111 1 00 0 00000122 223333
Q ss_pred HHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhh
Q 017523 73 IGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALL 144 (370)
Q Consensus 73 ~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~ 144 (370)
......+.+++.++++++++.+++...+.|++++++++++++|+++.. +++|..+.+.|+.+....
T Consensus 229 ~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~~ 294 (302)
T TIGR00817 229 GFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSRV 294 (302)
T ss_pred HHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHHH
Confidence 232344467788999999999999999999999999999999999999 999999999999987644
No 56
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.56 E-value=9.8e-07 Score=73.65 Aligned_cols=132 Identities=15% Similarity=0.192 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhC------CCCchhHHHHHHHHHHHHHHHHHHHhhccccc----cccc-----chHHHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQ------GLSPRVFVVYRQGTAALIMAPIVYISTRKSSY----RLSL-----GLRTFGW 66 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~------g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~----~~~~-----~~~~~~~ 66 (370)
..+.+.++.+...++.|..+++ ..++..+..+-...+++++.|.++..++.... .... ..+.+..
T Consensus 4 ~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (153)
T PF03151_consen 4 LALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFL 83 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHH
Confidence 4677889999999999998876 69999999999999999999998887664411 0000 1133556
Q ss_pred HHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHH
Q 017523 67 LFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAIT 140 (370)
Q Consensus 67 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l 140 (370)
++..|++. ...+...+..++++++-..+++...-.+++.++++++++|+++.. +++|+.++++|+++
T Consensus 84 ~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 84 LILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence 66677776 888899999999999999999999999999999999999999999 99999999999864
No 57
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.53 E-value=3e-06 Score=80.75 Aligned_cols=139 Identities=12% Similarity=0.046 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHH
Q 017523 170 LLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAI 249 (370)
Q Consensus 170 ~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~ 249 (370)
+.-..+++.-=.+-..+++..|...+..|-|++++.++++++.+.+.++.....++.+... .....+..++-.|++...
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~~ 126 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHLF 126 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHHH
Confidence 3333444444444455677889888888559999999999998876544322111111111 122356667777775555
Q ss_pred HHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhee
Q 017523 250 SFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLW 309 (370)
Q Consensus 250 ~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~ 309 (370)
.+.....+++..+++.++++..++|++++++++++++|+++..+++|.+++++|+.+...
T Consensus 127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 677778999999999999999999999999999999999999999999999999998764
No 58
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.46 E-value=1.1e-06 Score=69.16 Aligned_cols=70 Identities=19% Similarity=0.133 Sum_probs=63.5
Q ss_pred HHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523 67 LFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA 142 (370)
Q Consensus 67 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 142 (370)
....+++++.+..+++..+++..|.+.+..+.++.++++.++++++++||++++ |++|+.+.++|++++.
T Consensus 39 ~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 39 WLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 334454666889999999999999999999999999999999999999999999 9999999999999884
No 59
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.40 E-value=2e-06 Score=67.70 Aligned_cols=63 Identities=17% Similarity=0.099 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhe
Q 017523 246 ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVL 308 (370)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~ 308 (370)
+.++++.++..++++.+...+-.+..+.++++.++++++|||+++..+++|.++|++|+.+.-
T Consensus 46 ~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 46 CLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 677899999999999999999999999999999999999999999999999999999988764
No 60
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.38 E-value=4.2e-06 Score=75.15 Aligned_cols=142 Identities=13% Similarity=0.159 Sum_probs=115.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCccccc-ccchhHHHHHHHHHHH
Q 017523 168 NWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWT-LNSFLELACCLYSGIA 246 (370)
Q Consensus 168 ~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~gi~ 246 (370)
....|.++++.|-+.|+..-.+.|.+. .. ++..+..+..+.+.+....+.....+...-+. ...+..+......++-
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~kll~-~~-~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l 81 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYFKLLE-PL-PATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL 81 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHc-cC-CHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH
Confidence 345799999999999999999988754 45 48889999999998888777665543322222 2334456666666666
Q ss_pred HHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheecc
Q 017523 247 LAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGK 311 (370)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~ 311 (370)
...-+.+|.|+..+.....+|+-.++.|.+.+++|.++++|+++..|++..++..+|+....|..
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 77789999999999999999999999999999999999999999999999999999988876643
No 61
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.32 E-value=6.9e-06 Score=75.66 Aligned_cols=128 Identities=14% Similarity=0.183 Sum_probs=99.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCchhHHH-HHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLSPRVFVV-YRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQN 80 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~-~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (370)
..+.+.++|+.+.+..|... + .++..... +.......+..+.. ..... .....+++......|+++....+.
T Consensus 158 ~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~g~~~~~i~~~ 230 (292)
T COG0697 158 LALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLLLLLFF--LSGFG---APILSRAWLLLLYLGVFSTGLAYL 230 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHHH--hcccc---ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999876 4 67777776 44332222222222 11111 222335588888899998667999
Q ss_pred HHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523 81 AYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA 142 (370)
Q Consensus 81 ~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 142 (370)
+++.++++.+++.++.+..+.|++..++++++++|+++.+ +++|..+.+.|+.+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~ 286 (292)
T COG0697 231 LWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999 9999999999998874
No 62
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=3.8e-06 Score=76.30 Aligned_cols=228 Identities=14% Similarity=0.182 Sum_probs=135.6
Q ss_pred HHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhc
Q 017523 66 WLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLK 145 (370)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~ 145 (370)
+.+..|.+.+.++...-|.|..+-|++-.+.+..++-+..++++..+++||+++. ..+|..++++|-.+++...
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~ha 138 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVIHA 138 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEEec
Confidence 5567788888999999999999999999999999999999999999999999999 9999999999998887543
Q ss_pred CCccccccCCCCC-ccccc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH-------HH
Q 017523 146 GPKLVNEEFIPPK-SLIFS-SGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLE-------SA 216 (370)
Q Consensus 146 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~-------~~ 216 (370)
+.+- +..+ ..... -.+...+.-..+.++. ++ +-....|..-... +.+.......+.|+.. ..
T Consensus 139 P~e~-----~i~t~~el~~~~~~~~Fliy~~~iil~-~~--il~~~~~p~~g~t-nilvyi~i~s~iGS~tV~svKalg~ 209 (335)
T KOG2922|consen 139 PKEQ-----EIESVEEVWELATEPGFLVYVIIIILI-VL--ILIFFYAPRYGQT-NILVYIGICSLIGSLTVMSVKALGI 209 (335)
T ss_pred Cccc-----ccccHHHHHHHhcCccHHHHHHHHHHH-HH--HHheeeccccccc-ceeehhhHhhhhcceeeeeHHHHHH
Confidence 3211 0000 00000 0111222222111111 11 1111122110111 2333333333333221 11
Q ss_pred HHHHHhcCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhh-HHHHHHHHHHHHhcccch-----
Q 017523 217 TVALLVEKNLEAWTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPL-CTVIVTVLAGLFLDEEIF----- 290 (370)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l-~pv~a~~~~~~~~~e~~~----- 290 (370)
.+-....++ .+...+..|..++....|...-..-..+|++..++..++.+.+. -..++++-+.++|+|.-.
T Consensus 210 aiklt~~g~---~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~ 286 (335)
T KOG2922|consen 210 AIKLTFSGN---NQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALD 286 (335)
T ss_pred HHHHHhcCC---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 111122222 12222234555444444555555556799999999999888774 445566668888888542
Q ss_pred -hhhHhHHHHHHHhhhhheecc
Q 017523 291 -MGSLIGAFAVIIGLYVVLWGK 311 (370)
Q Consensus 291 -~~~~~G~~lI~~g~~l~~~~~ 311 (370)
...+.|...|+.|+.+....|
T Consensus 287 i~~~~~Gf~ti~~G~flL~~~k 308 (335)
T KOG2922|consen 287 IAGELCGFVTIFLGIFLLHRTK 308 (335)
T ss_pred HHHHHHhHHHhhheeeEeeeec
Confidence 235678999999998885433
No 63
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.24 E-value=1.3e-05 Score=74.48 Aligned_cols=123 Identities=9% Similarity=0.020 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHH---HHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHH
Q 017523 3 MVALQFLYAGVALFTRVALVQGLSPRVFVVYRQ---GTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQ 79 (370)
Q Consensus 3 ~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~---~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (370)
.+++.++++.+.+..|.. + .||...++... .++..++.+.. + + .+|. ..+..+..++.|++ ..+.+
T Consensus 157 ~l~sg~~y~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~--~-~-~~~~---~~~~~~~~~~~Gi~-~~ia~ 225 (290)
T TIGR00776 157 LLMSTIGYLVYVVVAKAF--G-VDGLSVLLPQAIGMVIGGIIFNLGH--I-L-AKPL---KKYAILLNILPGLM-WGIGN 225 (290)
T ss_pred HHHHHHHHHHHHHHHHHc--C-CCcceehhHHHHHHHHHHHHHHHHH--h-c-ccch---HHHHHHHHHHHHHH-HHHHH
Confidence 467789999999999975 3 78888854443 34444333322 1 1 1221 12335566668888 49999
Q ss_pred HHHHhhcc-ccchhHHHHhhhhHHHHHHHHHHHhccccccccccccccee----eehhhhhhhhHHHh
Q 017523 80 NAYFEGLY-LSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKI----LGTIFCVGGAITMA 142 (370)
Q Consensus 80 ~~~~~al~-~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~----~g~~l~~~Gv~ll~ 142 (370)
.+|+.+.+ +.+++.++.+.+..|+...++++++++|+.+++ ++ +|.++.+.|+.++.
T Consensus 226 ~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 226 FFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence 99999999 999999999999999999999999999999999 99 99999999998875
No 64
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.15 E-value=4.7e-07 Score=78.88 Aligned_cols=274 Identities=15% Similarity=0.102 Sum_probs=174.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHH
Q 017523 3 MVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAY 82 (370)
Q Consensus 3 ~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (370)
.++-++.||....++... |-+|.+-+.- ..++++++....++..+ |..+... +..-++.|.+ ..++|...
T Consensus 7 aL~P~l~WGsip~v~~k~---GG~p~qQ~lG-tT~GALifaiiv~~~~~---p~~T~~~--~iv~~isG~~-Ws~GQ~~Q 76 (288)
T COG4975 7 ALLPALGWGSIPLVANKF---GGKPYQQTLG-TTLGALIFAIIVFLFVS---PELTLTI--FIVGFISGAF-WSFGQANQ 76 (288)
T ss_pred HHHHHHHhcccceeeeec---CCChhHhhhh-ccHHHHHHHHHHheeec---Cccchhh--HHHHHHhhhH-hhhhhhhh
Confidence 456788999888776553 3456555543 34455555444444322 3333322 5555566666 59999999
Q ss_pred HhhccccchhHHHHhhh-hHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCccc
Q 017523 83 FEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLI 161 (370)
Q Consensus 83 ~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~ 161 (370)
+.|+++..++.+..+.. ++-+-+.+++.+.++|-.+.. -.++++..++++... -... +. .++++.
T Consensus 77 fka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~---------~~IlG~iAliliviG--~~lT--s~-~~~~nk 142 (288)
T COG4975 77 FKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPT---------QIILGFIALILIVIG--IYLT--SK-QDRNNK 142 (288)
T ss_pred hhheeeeeeeccccccchhhHhhceeeeEEEEeccCcch---------hHHHHHHHHHHHHHh--heEe--ee-eccccc
Confidence 99999999999999987 666778899999999977544 334444433333211 0000 00 000111
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHH
Q 017523 162 FSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCL 241 (370)
Q Consensus 162 ~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 241 (370)
..++.++...|....+.|.+.|-.|.++.+...- |.++... ...++.++..+..-.... +.......+.-.
T Consensus 143 ~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v---~g~saiL-PqAiGMv~~ali~~~~~~-----~~~~~K~t~~ni 213 (288)
T COG4975 143 EEENPSNLKKGIVILLISTLGYVGYVVLFQLFDV---DGLSAIL-PQAIGMVIGALILGFFKM-----EKRFNKYTWLNI 213 (288)
T ss_pred cccChHhhhhheeeeeeeccceeeeEeeeccccc---cchhhhh-HHHHHHHHHHHHHhhccc-----ccchHHHHHHHH
Confidence 1345556789999999999999999999987642 2333322 223333333333322221 112222233334
Q ss_pred HHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhh----HhHHHHHHHhhhhhee
Q 017523 242 YSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGS----LIGAFAVIIGLYVVLW 309 (370)
Q Consensus 242 ~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~----~~G~~lI~~g~~l~~~ 309 (370)
.-|+..+++-..+..+-++.|..+.=.++-+..+++.+-+.++++|+=|..+ ++|.+++++|..+.-.
T Consensus 214 i~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 214 IPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred hhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 5666677788888888889998888888889999999999999999888775 4688888888666543
No 65
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.03 E-value=3e-05 Score=72.76 Aligned_cols=135 Identities=14% Similarity=-0.011 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA 81 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (370)
+++.+++++|.++++-+...++ .|+..+..+--+++.++..+.....+++......++.+....++..+++ .+..+.+
T Consensus 172 l~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~-lf~~y~l 249 (334)
T PF06027_consen 172 LALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC-LFLFYSL 249 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH-HHHHHHH
Confidence 5788999999999999998877 8888888888888888888887777776665555555545444444444 3666667
Q ss_pred HHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhh
Q 017523 82 YFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALL 144 (370)
Q Consensus 82 ~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~ 144 (370)
.-..+++++++...+=..++.++..++..+++++++++. .++|.++.++|.++....
T Consensus 250 ~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~~ 306 (334)
T PF06027_consen 250 VPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNLA 306 (334)
T ss_pred HHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEcc
Confidence 778899999988887778899999999999999999999 899999999999887543
No 66
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.03 E-value=5.7e-05 Score=61.01 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=63.6
Q ss_pred HHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHH--hcccccccccccccceeeehhhhhhhhHHHh
Q 017523 67 LFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFI--AGWEKVHNRSLRSIAKILGTIFCVGGAITMA 142 (370)
Q Consensus 67 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~--~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 142 (370)
.+..|+....+.+.++..+++..+++.+..+....+.++.+.++. +++|+++++ |++|+.+.++|++++.
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 466777777899999999999999999999999999888888874 899999999 9999999999999985
No 67
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.91 E-value=7e-05 Score=65.86 Aligned_cols=128 Identities=14% Similarity=0.026 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHH
Q 017523 3 MVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAY 82 (370)
Q Consensus 3 ~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (370)
.+.+..||+.+-+..|.+.+. .|.-.-+.+-+++++++.+|+..-..... -++++. +..-+..|+++..+.+.+-
T Consensus 153 Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~ag~~--l~~p~l--l~laLgvavlSSalPYsLE 227 (292)
T COG5006 153 ALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQAGPA--LFSPSL--LPLALGVAVLSSALPYSLE 227 (292)
T ss_pred HHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhhcchh--hcChHH--HHHHHHHHHHhcccchHHH
Confidence 456789999999999998765 67777788889999999999976433211 222333 5666778999999999999
Q ss_pred HhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHH
Q 017523 83 FEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITM 141 (370)
Q Consensus 83 ~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 141 (370)
..+++..|...-.++.++.|.+.++.++++++|+++.. ||+++...+.+..-.
T Consensus 228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsaG~ 280 (292)
T COG5006 228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASAGS 280 (292)
T ss_pred HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999 999998877766543
No 68
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.88 E-value=0.0002 Score=66.95 Aligned_cols=128 Identities=13% Similarity=0.040 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhhccC-Cc--hhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 017523 182 FWSFWMILQVPISSSI-PN--HSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFFLQAWCI 258 (370)
Q Consensus 182 ~~a~~~v~~~~~~~~~-~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~~~~~~~l 258 (370)
++..+.++++++.++. .. +..+++.++.+..+...+.......+. ... ..+.-....++...++..+...++
T Consensus 11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~al 85 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPK--SRK---IPLKKYAILSFLFFLASVLSNAAL 85 (303)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccC--CCc---ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667888876543 23 778888888888887776666443111 111 112333444556677888899999
Q ss_pred hccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchh
Q 017523 259 SERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAED 314 (370)
Q Consensus 259 ~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~ 314 (370)
++.+..+-.++....|+.+.++++++++++.+..++++.+++.+|+.+....+.++
T Consensus 86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~ 141 (303)
T PF08449_consen 86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSS 141 (303)
T ss_pred HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccc
Confidence 99999999999999999999999999999999999999999999999998766543
No 69
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.86 E-value=0.00015 Score=57.56 Aligned_cols=66 Identities=12% Similarity=0.331 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhccCceeeecc-hhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheecc
Q 017523 246 ALAISFFLQAWCISERGPLFCAMF-NPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGK 311 (370)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~s~~-~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~ 311 (370)
+.+++++++..++|+.+...+=.+ ..+..+.++++++++|||++++.+++|.++|++|+.......
T Consensus 39 ~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 39 MISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 567889999999999988877555 468889999999999999999999999999999998886544
No 70
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.74 E-value=0.00061 Score=55.75 Aligned_cols=132 Identities=8% Similarity=0.032 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHHH
Q 017523 172 GCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISF 251 (370)
Q Consensus 172 G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~ 251 (370)
..++++++..+-++...++.++.++..++...+++.+..+.+...++.++.++. ++.......|+..+ .|+.+....
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~lG~~~V 78 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGLLGVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHHHHHHHH
Confidence 357888999999999999999888875699999999999999888877766543 22222222233322 444566666
Q ss_pred HHHHHHHhccCceeeecchh-hHHHHHHHHHHH----HhcccchhhhHhHHHHHHHhhhh
Q 017523 252 FLQAWCISERGPLFCAMFNP-LCTVIVTVLAGL----FLDEEIFMGSLIGAFAVIIGLYV 306 (370)
Q Consensus 252 ~~~~~~l~~~~~~~~s~~~~-l~pv~a~~~~~~----~~~e~~~~~~~~G~~lI~~g~~l 306 (370)
.+..+.+++.|+.....+.. -|.+.+.++|.+ .-++++++.+++|.+++++|+++
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 77788899999988777665 466667777886 33468999999999999999864
No 71
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.65 E-value=0.00048 Score=53.91 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhccCceeeecc-hhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheecc
Q 017523 246 ALAISFFLQAWCISERGPLFCAMF-NPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGK 311 (370)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~s~~-~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~ 311 (370)
+.+++++++..++++.+...+=.. ..+..+.++++++++|||++++.+++|.++|++|++.....+
T Consensus 39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 556778888888888877766444 457788889999999999999999999999999999986543
No 72
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.56 E-value=2.6e-05 Score=69.01 Aligned_cols=136 Identities=13% Similarity=0.130 Sum_probs=95.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHH
Q 017523 168 NWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIAL 247 (370)
Q Consensus 168 ~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~ 247 (370)
....|..+..++ ..+...+++.++.... ||.......+++-.++..+..++.... -|-......|+.+ -|+-+
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~--~p~e~a~~r~l~~mlit~pcliy~~~~--v~gp~g~R~~LiL--Rg~mG 107 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEN--DPMELASFRLLVRMLITYPCLIYYMQP--VIGPEGKRKWLIL--RGFMG 107 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhcc--ChhHhhhhhhhhehhhhheEEEEEeee--eecCCCcEEEEEe--ehhhh
Confidence 556788888888 8888888888887765 456555555544444333333322111 1112222223222 23333
Q ss_pred HHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheec
Q 017523 248 AISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWG 310 (370)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~ 310 (370)
..+.++.++++++.+-+-++.+.+.+|+++++++|.+++|+.+....+|..+-+.|+++..+.
T Consensus 108 ~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP 170 (346)
T KOG4510|consen 108 FTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP 170 (346)
T ss_pred hhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence 456667788999999999999999999999999999999999999999999999999988753
No 73
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.55 E-value=0.00071 Score=61.21 Aligned_cols=81 Identities=17% Similarity=0.127 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecch-hhHHHHHHHHHHHHhcccchhhhH----hHHHHHHHhhhhhee
Q 017523 235 LELACCLYSGIALAISFFLQAWCISERGPLFCAMFN-PLCTVIVTVLAGLFLDEEIFMGSL----IGAFAVIIGLYVVLW 309 (370)
Q Consensus 235 ~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~-~l~pv~a~~~~~~~~~e~~~~~~~----~G~~lI~~g~~l~~~ 309 (370)
..++.-...|+...+++..++++.++.|.+++-.+. .++.+.+.++++++|||+-+..++ ++.++|++|+++..+
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 445555667779999999999999999999999888 578888999999999998876654 477788899999888
Q ss_pred ccchhh
Q 017523 310 GKAEDL 315 (370)
Q Consensus 310 ~~~~~~ 315 (370)
++++++
T Consensus 123 ~~~~~~ 128 (269)
T PF06800_consen 123 QDKKSD 128 (269)
T ss_pred cccccc
Confidence 665543
No 74
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.48 E-value=0.0017 Score=50.67 Aligned_cols=63 Identities=10% Similarity=0.155 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhccCceee-ecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhe
Q 017523 246 ALAISFFLQAWCISERGPLFC-AMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVL 308 (370)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~ 308 (370)
+.++++++...++|+.+...+ ++...+..+.+++.++++|||++++.+++|.++|+.|+....
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 567788999999999887765 445557788889999999999999999999999999998763
No 75
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.46 E-value=0.00046 Score=64.15 Aligned_cols=120 Identities=21% Similarity=0.217 Sum_probs=86.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHH
Q 017523 167 DNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIA 246 (370)
Q Consensus 167 ~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~ 246 (370)
..+..|..++++|+++.+....++|+-..|.+ .-..-.-.. ...+ ...+.+|..++..
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~-~~~~~~~~~--------~~~~----------l~~~~W~~G~~~~--- 60 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLP-RGSLRAGSG--------GRSY----------LRRPLWWIGLLLM--- 60 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccccch--------hhHH----------HhhHHHHHHHHHH---
Confidence 35789999999999999999999998655542 100000000 0000 1112233333322
Q ss_pred HHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhee
Q 017523 247 LAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLW 309 (370)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~ 309 (370)
.++..+.+.++...+++.++.++.+..++..+++..++||+++...++|.++++.|..+...
T Consensus 61 -~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 61 -VLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred -hcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 33445566788888999999999999999999999999999999999999999999887654
No 76
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.42 E-value=0.0011 Score=50.93 Aligned_cols=65 Identities=17% Similarity=0.289 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhccCceee-ecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheec
Q 017523 246 ALAISFFLQAWCISERGPLFC-AMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWG 310 (370)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~ 310 (370)
+..++|++...++|+.+...+ ++......+.+++.++++|||+++..+++|.+++++|+......
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 456788888899999887655 55666788889999999999999999999999999999987654
No 77
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.41 E-value=0.0016 Score=50.80 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhh-hHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHH
Q 017523 64 FGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITM 141 (370)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 141 (370)
+++....- .++...+++...+++..|.+.+-.+-. .--+.+.+++.++++|++++. |++|+.+.+.|++.+
T Consensus 35 ~~~~~~~~-~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 35 KIYGILSL-AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 44433333 334778889999999999999988876 677788899999999999999 999999999999886
No 78
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.40 E-value=0.0014 Score=61.68 Aligned_cols=136 Identities=12% Similarity=0.011 Sum_probs=93.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH-----HHhcCCc-ccccccchhHHHHHH
Q 017523 168 NWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVA-----LLVEKNL-EAWTLNSFLELACCL 241 (370)
Q Consensus 168 ~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~l 241 (370)
+...|.++++++++||+.+.+-+|+ .++. +.... |- ..+. +..++. .+..++. ......+...+....
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w--~wE~~-W~-v~gi-~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~ 77 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKW--SWETM-WS-VGGI-FSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVF 77 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCC--chhHH-HH-HHHH-HHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHH
Confidence 4678999999999999999999998 5554 22222 33 2222 221111 1222221 112223344455556
Q ss_pred HHHHHHHHHHHHHHHHHhccCceeeecch-hhHHHHHHHHHHHHhcccc---h----hhhHhHHHHHHHhhhhhee
Q 017523 242 YSGIALAISFFLQAWCISERGPLFCAMFN-PLCTVIVTVLAGLFLDEEI---F----MGSLIGAFAVIIGLYVVLW 309 (370)
Q Consensus 242 ~~gi~~~~~~~~~~~~l~~~~~~~~s~~~-~l~pv~a~~~~~~~~~e~~---~----~~~~~G~~lI~~g~~l~~~ 309 (370)
..|+...++...+..++|+.|.+..-.+. -++-+.+.+++.+++||.. + ...++|.+++++|+.+..+
T Consensus 78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 66778899999999999999998876665 4889999999999999765 2 2356899999999999876
No 79
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.34 E-value=0.0022 Score=49.73 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhccCceee-ecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhee
Q 017523 246 ALAISFFLQAWCISERGPLFC-AMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLW 309 (370)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~ 309 (370)
+.++++++...++|+.+...+ ++...+..+.+++.++++|||++++.+++|.++|++|+.....
T Consensus 38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 567788888999998887665 4555588889999999999999999999999999999988753
No 80
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.28 E-value=0.0017 Score=49.28 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhccCceee-ecchhhHHHHHHHHHHHHhcccchhhhHhHHHHH
Q 017523 246 ALAISFFLQAWCISERGPLFC-AMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAV 300 (370)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI 300 (370)
+.++++.++.+++|+.+...+ .+...+..+...+.++++|||+++..+++|.++|
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 667889999999999999988 5566799999999999999999999999999886
No 81
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.0002 Score=62.76 Aligned_cols=132 Identities=12% Similarity=0.068 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHHH
Q 017523 172 GCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISF 251 (370)
Q Consensus 172 G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~ 251 (370)
+.+++++=++.|+..-....|... +|...+.-+. +++++..+..++...+ ..+...+..-...|....+++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~lGtT-~GALifaiiv~~~~~p-----~~T~~~~iv~~isG~~Ws~GQ 73 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG---KPYQQTLGTT-LGALIFAIIVFLFVSP-----ELTLTIFIVGFISGAFWSFGQ 73 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC---ChhHhhhhcc-HHHHHHHHHHheeecC-----ccchhhHHHHHHhhhHhhhhh
Confidence 457889999999988887766543 2454444433 3444443333322221 112223333344555788899
Q ss_pred HHHHHHHhccCceeeecchh-hHHHHHHHHHHHHhcccchhhhH----hHHHHHHHhhhhheeccc
Q 017523 252 FLQAWCISERGPLFCAMFNP-LCTVIVTVLAGLFLDEEIFMGSL----IGAFAVIIGLYVVLWGKA 312 (370)
Q Consensus 252 ~~~~~~l~~~~~~~~s~~~~-l~pv~a~~~~~~~~~e~~~~~~~----~G~~lI~~g~~l~~~~~~ 312 (370)
..++++++..+.+++..++. .|-+-+.+++++.|||+.+..++ +..++++.|+++-.+.++
T Consensus 74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 99999999999999988865 78888999999999999988865 356678899998888665
No 82
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.006 Score=50.09 Aligned_cols=140 Identities=9% Similarity=0.002 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccch-hHHHHHHHHHHHH
Q 017523 169 WLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSF-LELACCLYSGIAL 247 (370)
Q Consensus 169 ~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~gi~~ 247 (370)
..+..++++++..+-.+..-+..++.+...+|..-.+..+.++++.+..+.+..++. ..+..... .+|..+ .|+.+
T Consensus 3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~-~~~a~~~~~pwW~~~--GG~lG 79 (150)
T COG3238 3 MYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGH-PGLAAVASAPWWAWI--GGLLG 79 (150)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCC-CchhhccCCchHHHH--ccchh
Confidence 345677888888998888888888877775688888899999999888887764332 22332122 233332 22322
Q ss_pred HHHHHHHHHHHhccCceee-ecchhhHHHHHHHHHHHHhc----ccchhhhHhHHHHHHHhhhhheecc
Q 017523 248 AISFFLQAWCISERGPLFC-AMFNPLCTVIVTVLAGLFLD----EEIFMGSLIGAFAVIIGLYVVLWGK 311 (370)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~a~~~~~~~~~----e~~~~~~~~G~~lI~~g~~l~~~~~ 311 (370)
.+--+.-.....+.|++.. .....-|.+.+.++|.+=++ .+++...++|.+++++|+++..+++
T Consensus 80 a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~ 148 (150)
T COG3238 80 AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG 148 (150)
T ss_pred hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 2233334456666666544 44556678888888888665 6789999999999999966665543
No 83
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.14 E-value=0.00093 Score=53.03 Aligned_cols=69 Identities=14% Similarity=-0.020 Sum_probs=59.9
Q ss_pred HHHHHHhHHHHHHHhhccccchhHHHHhh-hhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhh
Q 017523 70 ASLIGVTANQNAYFEGLYLSSSTVASAMT-NLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALL 144 (370)
Q Consensus 70 ~g~~~~~~~~~~~~~al~~~~~~~a~~i~-~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~ 144 (370)
..+..+...++++..++++.|.+.+-.+- ...-+.+.+++.++++|++++. |++|+.+.++|++.+-..
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhcC
Confidence 34444578889999999999999999986 4788889999999999999999 999999999999888533
No 84
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.07 E-value=0.0014 Score=51.28 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=58.2
Q ss_pred HHHHHhHHHHHHHhhccccchhHHHHhhh-hHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523 71 SLIGVTANQNAYFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA 142 (370)
Q Consensus 71 g~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 142 (370)
.+.++.+.++++..+++..|.+.+-.+-. ..-+.+.++++++++|++++. |++|+.+.++|++.+-
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 34445778888999999999999998854 778888999999999999999 9999999999999984
No 85
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.05 E-value=0.0012 Score=51.52 Aligned_cols=111 Identities=13% Similarity=0.134 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHH
Q 017523 3 MVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAY 82 (370)
Q Consensus 3 ~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (370)
+++..++||...++.|..... .++..-.. |..-.... +++ + + ++.+ .++-.-.+...|
T Consensus 1 ~l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~-----Ll~----------n---~-~y~i-pf~lNq~GSv~f 58 (113)
T PF10639_consen 1 LLLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKF-----LLL----------N---P-KYII-PFLLNQSGSVLF 58 (113)
T ss_pred CeeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHH-----HHH----------h---H-HHHH-HHHHHHHHHHHH
Confidence 356789999999999998865 44443331 32111111 010 0 1 1112 222235566788
Q ss_pred HhhccccchhHHHHhh-hhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHH
Q 017523 83 FEGLYLSSSTVASAMT-NLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITM 141 (370)
Q Consensus 83 ~~al~~~~~~~a~~i~-~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 141 (370)
++.+...+.+.+..+. .++=++|++.++++.+|..+++ +++|+.+.++|+.+.
T Consensus 59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC 112 (113)
T ss_pred HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence 8899999999999997 5777888888888888888888 899999999998764
No 86
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.02 E-value=0.0072 Score=49.45 Aligned_cols=124 Identities=20% Similarity=0.192 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHh
Q 017523 6 LQFLYAGVALFTRVALVQGL-SPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFE 84 (370)
Q Consensus 6 ~~~~~g~~~~~~k~~~~~g~-~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (370)
+.++-+....+.-...+. . +|..-+++-+..+++++..+.+..+++..+..+ +..++..+.|+++ .....+...
T Consensus 9 aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~---~~p~w~~lGG~lG-~~~V~~~~~ 83 (138)
T PF04657_consen 9 AGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSLASLS---SVPWWAYLGGLLG-VFFVLSNII 83 (138)
T ss_pred HHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhcccccchhc---cCChHHhccHHHH-HHHHHHHHH
Confidence 334444444444444433 4 599999999999999988877776654222211 2245666688888 888888999
Q ss_pred hccccchhHHHHhhhh-HHHHHHHHHHH----hcccccccccccccceeeehhhhhhhhHH
Q 017523 85 GLYLSSSTVASAMTNL-MPAVTFVMAFI----AGWEKVHNRSLRSIAKILGTIFCVGGAIT 140 (370)
Q Consensus 85 al~~~~~~~a~~i~~~-~P~~~~lla~~----~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l 140 (370)
......++.++.+.-+ +-+...++..+ .-+++++++ |++|+++.++|+++
T Consensus 84 ~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 84 LVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL 138 (138)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence 9999999988888765 55556666664 357788888 99999999999864
No 87
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.93 E-value=0.0045 Score=47.58 Aligned_cols=62 Identities=18% Similarity=0.049 Sum_probs=55.4
Q ss_pred HhHHHHHHHhhccccchhHHHHhhh-hHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523 75 VTANQNAYFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA 142 (370)
Q Consensus 75 ~~~~~~~~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 142 (370)
+...+.+.-.++++.|.+.+-++-. .--+.+.+.++++++|++++. |++|+.+.++|++.+-
T Consensus 40 ~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 40 YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence 4677888899999999999988876 677778899999999999999 9999999999999873
No 88
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.88 E-value=0.0073 Score=46.81 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=57.3
Q ss_pred HHHHhHHHHHHHhhccccchhHHHHhhh-hHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523 72 LIGVTANQNAYFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA 142 (370)
Q Consensus 72 ~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 142 (370)
+.++...+++...+++..|.+.+-.+-. .--+.+.+++.++++|++++. |++|+.+.++|++.+-
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence 3344778889999999999999988876 777888999999999999999 9999999999999873
No 89
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.78 E-value=0.002 Score=57.94 Aligned_cols=133 Identities=13% Similarity=0.050 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHHH
Q 017523 172 GCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISF 251 (370)
Q Consensus 172 G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~ 251 (370)
|.+.+++|+++|+...+=.|+.-.. |++....+++....+...++.+..+.+ .+. .++++... ....+-
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~p--~f~------p~amlgG~-lW~~gN 69 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILGFP--PFY------PWAMLGGA-LWATGN 69 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcCCC--cce------eHHHhhhh-hhhcCc
Confidence 4567889999999999988876544 677766666666555555555543322 111 11111111 111112
Q ss_pred HHHHHHHhccCceeeecc-hhhHHHHHHHHHHH-Hhcccc-----hhhhHhHHHHHHHhhhhheeccchhh
Q 017523 252 FLQAWCISERGPLFCAMF-NPLCTVIVTVLAGL-FLDEEI-----FMGSLIGAFAVIIGLYVVLWGKAEDL 315 (370)
Q Consensus 252 ~~~~~~l~~~~~~~~s~~-~~l~pv~a~~~~~~-~~~e~~-----~~~~~~G~~lI~~g~~l~~~~~~~~~ 315 (370)
.+-.-.+|..|-...-.+ +..+.+.+-..+.+ +||++. .+..++|++++++|..++..-|++++
T Consensus 70 ~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~ 140 (254)
T PF07857_consen 70 ILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEK 140 (254)
T ss_pred eeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCC
Confidence 222223333332222222 22344555555544 455432 45678999999999999887766553
No 90
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.76 E-value=0.0038 Score=56.30 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccch
Q 017523 246 ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAE 313 (370)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~ 313 (370)
.-.+...+.+.++++.+|++..++..+.+++++++.+++++.+++..+|++..+..+|+.++......
T Consensus 26 lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 26 LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 44556677889999999999999999999999999999999999999999999999999998775544
No 91
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.43 E-value=0.025 Score=44.26 Aligned_cols=109 Identities=14% Similarity=0.068 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 017523 178 GSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFFLQAWC 257 (370)
Q Consensus 178 ~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~~~~~~~ 257 (370)
+-+++|+..+-+.||-.+... +..-.. + ...-... ++. + |-..+-.. ....+...|++.
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~-~~~~~~-~-~~~~~~~----Ll~----------n---~~y~ipf~-lNq~GSv~f~~~ 61 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLE-KVKASL-Q-LLQEIKF----LLL----------N---PKYIIPFL-LNQSGSVLFFLL 61 (113)
T ss_pred eehHHhcCchHHHHHHHhhcC-CccchH-H-HHHHHHH----HHH----------h---HHHHHHHH-HHHHHHHHHHHH
Confidence 457899999999999776553 222211 2 1111111 111 0 11111111 234456778899
Q ss_pred HhccCceeeecch-hhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhh
Q 017523 258 ISERGPLFCAMFN-PLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVV 307 (370)
Q Consensus 258 l~~~~~~~~s~~~-~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~ 307 (370)
+.+.+-+.+..+. .+.-+++++.++++.+|..+...++|.++|+.|+.++
T Consensus 62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 9999999999984 8999999999998888888989999999999998764
No 92
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.24 E-value=0.022 Score=43.22 Aligned_cols=56 Identities=18% Similarity=-0.015 Sum_probs=34.0
Q ss_pred HHHHhHHHHHHHhhccccchhHHHHhhh-hHHHHHHHHHHHhcccccccccccccceeeehhh
Q 017523 72 LIGVTANQNAYFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIF 133 (370)
Q Consensus 72 ~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l 133 (370)
+.++....+++..++++.|.+.+-.+-. +..+.+.+.+.++++|+++++ |++|+.+
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l 92 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence 3345788899999999999999988765 888999999999999999999 8888765
No 93
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.24 E-value=0.008 Score=56.13 Aligned_cols=138 Identities=15% Similarity=0.186 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccc-hHHHHHHHHHHHHHHhH
Q 017523 2 AMVALQFLYAGVALFTRVALVQ---GLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG-LRTFGWLFVASLIGVTA 77 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~---g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~ 77 (370)
..++.++++|.+.++.|.-.++ .+|--.+-.+-.++..++++|..++...-.++++..+ ..|...++..++++.++
T Consensus 251 laL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvv 330 (416)
T KOG2765|consen 251 LALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVV 330 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHH
Confidence 4577889999999999986543 2665555566677888888877665544333333322 24577788889999999
Q ss_pred HHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhc
Q 017523 78 NQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLK 145 (370)
Q Consensus 78 ~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~ 145 (370)
..++|..|.-.+++-.+++=..++--+.++...++.+.++++. .++|.+..++|-+++...+
T Consensus 331 SDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 331 SDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred HHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheeccc
Confidence 9999999999999999988887666667777888889999988 9999999999988885443
No 94
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.14 E-value=0.0072 Score=56.23 Aligned_cols=133 Identities=12% Similarity=0.104 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHHHHH-HHHHHhhcccc---cccccchHHHHHHHHHHHHHH
Q 017523 3 MVALQFLYAGVALFTRVALV---QGLSPRVFVVYRQGTAALIMA-PIVYISTRKSS---YRLSLGLRTFGWLFVASLIGV 75 (370)
Q Consensus 3 ~~~~~~~~g~~~~~~k~~~~---~g~~p~~~~~~R~~~~~l~l~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~ 75 (370)
.+.+.+..+.-.++.|..+. +.+|++.+..+-.-++.+.++ |+....+.... ....++...+..+ +..++.
T Consensus 168 a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sv~~- 245 (316)
T KOG1441|consen 168 AMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILL-LNSVLA- 245 (316)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHH-HHHHHH-
Confidence 34556777888889999884 349999999998888888888 88776554332 1112333324443 344676
Q ss_pred hHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhh
Q 017523 76 TANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMAL 143 (370)
Q Consensus 76 ~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 143 (370)
.+.+..-|..+..++|-.-++...+==+++...+++++++++++. +..|..++++|+.+=..
T Consensus 246 f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 246 FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHHH
Confidence 666777888999998888888887777778888999999999999 99999999999988643
No 95
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=96.09 E-value=0.84 Score=42.68 Aligned_cols=238 Identities=13% Similarity=0.095 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhh-hHHHHHHHHHHHhccccc-ccccccccceeeehhhhhhhhH
Q 017523 62 RTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKV-HNRSLRSIAKILGTIFCVGGAI 139 (370)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~-~~~~~~~~~~~~g~~l~~~Gv~ 139 (370)
..+++..+.|++= .+....|=.+++|+..+..+.+.- +.-++-.++-.++.++-- -..+..++..++|++++++|+.
T Consensus 71 ~~l~~~~l~G~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIa 149 (344)
T PF06379_consen 71 STLFWTFLFGVLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIA 149 (344)
T ss_pred hHHHHHHHHHHHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHH
Confidence 3477778888884 788889999999998877766654 666666666666544311 1223346678999999999999
Q ss_pred HHhhhcCCccccccCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHh-------hccCCchhH----HHHHHH
Q 017523 140 TMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPI-------SSSIPNHSY----SSAWMC 208 (370)
Q Consensus 140 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~-------~~~~~~~~~----~~~~~~ 208 (370)
++......+ +.+.+ .+..+.+...|.+++++|.+.-|.+++-...- .+...+++. ......
T Consensus 150 i~g~AG~~K------e~~~~--~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~ 221 (344)
T PF06379_consen 150 ICGKAGSMK------EKELG--EEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVL 221 (344)
T ss_pred HHhHHHHhh------hhhhc--cchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhh
Confidence 986432211 11111 11334567899999999999999988865421 110001211 111111
Q ss_pred HHHHHHHHHHHHHh---cCCcc---ccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHhccCce----eeecchhhHHH
Q 017523 209 FLASLESATVALLV---EKNLE---AWT---LNSFLELACCLYSGIALAISFFLQAWCISERGPL----FCAMFNPLCTV 275 (370)
Q Consensus 209 ~~~~i~~~~~~~~~---~~~~~---~~~---~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~----~~s~~~~l~pv 275 (370)
.-+.+.-+.-.+.. .++.. ++. .+...++...+..|+.....++.|-++-.+.++. --.+.+.+..+
T Consensus 222 ~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl 301 (344)
T PF06379_consen 222 WGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVL 301 (344)
T ss_pred hhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence 22222222222221 12221 111 1122455565667777788888888888877754 23345566677
Q ss_pred HHHHHHHHHhccc------chhhhHhHHHHHHHhhhhhee
Q 017523 276 IVTVLAGLFLDEE------IFMGSLIGAFAVIIGLYVVLW 309 (370)
Q Consensus 276 ~a~~~~~~~~~e~------~~~~~~~G~~lI~~g~~l~~~ 309 (370)
++-+++. +++|. .-..-++|.++++.++.++-+
T Consensus 302 ~snvwGl-~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 302 FSNVWGL-ILKEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred HHHHHHH-HHHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 7777776 46763 223357888888888777644
No 96
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.91 E-value=0.29 Score=45.79 Aligned_cols=140 Identities=11% Similarity=0.011 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc----CCchhHHHHHHHHHHHHHHHHHHHHhcCC-----ccc---ccccchhHHH
Q 017523 171 LGCFLLFGSSWFWSFWMILQVPISSS----IPNHSYSSAWMCFLASLESATVALLVEKN-----LEA---WTLNSFLELA 238 (370)
Q Consensus 171 ~G~~l~l~aa~~~a~~~v~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~---~~~~~~~~~~ 238 (370)
.=.+..++..+.++......|...++ + .+.+..+..-+.-.+++..+.+...+. ... +....+.+..
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f-~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~l 93 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMF-LPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETL 93 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCc-chhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHH
Confidence 44566677777888888887765433 3 477888888888888887777755311 111 1111111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheecc
Q 017523 239 CCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGK 311 (370)
Q Consensus 239 ~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~ 311 (370)
.+..=++...+--.+++.++++.+|++..+...+.+..+.++.+++++++++..||...++...|+.++.+..
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~ 166 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPS 166 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC
Confidence 2111111122233477889999999999999999999999999999999999999999999999999998433
No 97
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.65 E-value=0.095 Score=46.45 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=56.1
Q ss_pred HHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhH
Q 017523 68 FVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAI 139 (370)
Q Consensus 68 ~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ 139 (370)
+...+.. +..+.+...-++|.++..-+....+.++++.+++.++++|+++.. +++|+.+.+.|+.
T Consensus 156 ~~~~~~~-a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~ 220 (222)
T TIGR00803 156 WIVGLLN-VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF 220 (222)
T ss_pred HHHHHHH-HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence 3344444 667778888999999999999999999999999999999999999 9999999888764
No 98
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.39 E-value=0.58 Score=38.54 Aligned_cols=107 Identities=11% Similarity=0.120 Sum_probs=70.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhh-hHHHH
Q 017523 26 SPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTN-LMPAV 104 (370)
Q Consensus 26 ~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~P~~ 104 (370)
+|..-.+.-+..+.+++..+.+...++. ......+..+|.+..|+++ +.+-...........++...++.- -+-+.
T Consensus 33 spl~As~isf~vGt~~L~~l~l~~~~~~--~~a~~~~~pwW~~~GG~lG-a~~vt~s~~l~p~lGa~~t~~l~i~gQli~ 109 (150)
T COG3238 33 SPLLASLISFLVGTVLLLILLLIKQGHP--GLAAVASAPWWAWIGGLLG-AIFVTSSILLAPRLGAATTIALVIAGQLIM 109 (150)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCC--chhhccCCchHHHHccchh-hhhhhhhHHhccchhHHHHHHHHHHHHHHH
Confidence 5888889999999888888777744332 2233334577888888887 666666666666666665555544 34444
Q ss_pred HHHHHHH-hc---ccccccccccccceeeehhhhhhhhHHH
Q 017523 105 TFVMAFI-AG---WEKVHNRSLRSIAKILGTIFCVGGAITM 141 (370)
Q Consensus 105 ~~lla~~-~~---~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 141 (370)
..++..+ ++ +.+++.. |++|+++.++|++++
T Consensus 110 glliD~fG~~g~~~~~~~~~------r~lgi~L~l~gil~~ 144 (150)
T COG3238 110 GLLIDHFGWFGVPKRPLNLP------RILGILLVLAGILLA 144 (150)
T ss_pred HHHHHhhcccCCCcCCCCHH------HHHHHHHHHHHHHHh
Confidence 4444432 12 3556666 999999999995554
No 99
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=0.025 Score=51.94 Aligned_cols=125 Identities=17% Similarity=0.157 Sum_probs=87.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHH
Q 017523 166 ADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGI 245 (370)
Q Consensus 166 ~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi 245 (370)
...+..|.++++.+.+..+...++.|+..+|.. . ...+ ..+++ ..+. ..+.+|..++-.++
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~---~~~r-------------a~~gg-~~yl-~~~~Ww~G~ltm~v 76 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A---SGLR-------------AGEGG-YGYL-KEPLWWAGMLTMIV 76 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h---hccc-------------ccCCC-cchh-hhHHHHHHHHHHHH
Confidence 456789999999999999999999998766542 1 0000 01111 1111 22334554444444
Q ss_pred HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccch
Q 017523 246 ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAE 313 (370)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~ 313 (370)
+-.+.+.+....+++.++.++.++.++.++++..+++|++++...+|+++.++|.++.....++
T Consensus 77 ----Gei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~ 140 (335)
T KOG2922|consen 77 ----GEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPK 140 (335)
T ss_pred ----HhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCc
Confidence 3344444555568999999999999999999999999999999999999999997776544333
No 100
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=93.96 E-value=0.041 Score=50.13 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcc-----------cccccchhHHHHHHHHHH
Q 017523 177 FGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLE-----------AWTLNSFLELACCLYSGI 245 (370)
Q Consensus 177 l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~gi 245 (370)
+++.+||+.|-..+|...++.. ....++|=..++.++..++..+.-+... +....+...+......|+
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR-~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv 80 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGR-LPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV 80 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCC-ccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence 5678899999999988766432 1123445555555444444332222111 111122223333344444
Q ss_pred HHHHHHHHHHHHHhccCceeeecchh-hHHHHHHHHHHHHhcccchh--hhHhHHHHHHHhhhhhe
Q 017523 246 ALAISFFLQAWCISERGPLFCAMFNP-LCTVIVTVLAGLFLDEEIFM--GSLIGAFAVIIGLYVVL 308 (370)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~s~~~~-l~pv~a~~~~~~~~~e~~~~--~~~~G~~lI~~g~~l~~ 308 (370)
.--++-.+..+++...|-+.+-.+.. +..++++.+.| +++.+... .-+.|.+++++++.+-.
T Consensus 81 vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NY-fld~~~n~a~iLF~GV~cf~iAI~lga 145 (336)
T PF07168_consen 81 VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNY-FLDPKINRAEILFPGVACFLIAIILGA 145 (336)
T ss_pred hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeee-eccCCCCCceEEEccHHHHHHHHHHHH
Confidence 44556666777776666655544432 23344555555 34566553 34568888888877753
No 101
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=93.68 E-value=0.86 Score=41.21 Aligned_cols=180 Identities=8% Similarity=-0.034 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA 81 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (370)
+.+.+.+++|.+++=.|..- . -|++.+-++-.....+.-+.+.++.. .|+ . ..+.++.|.+ .+.++.+
T Consensus 4 a~~va~~~fGs~~vPvK~~~-~-gDg~~fQw~~~~~i~~~g~~v~~~~~---~p~----f--~p~amlgG~l-W~~gN~~ 71 (254)
T PF07857_consen 4 ACIVAVLFFGSNFVPVKKFD-T-GDGFFFQWVMCSGIFLVGLVVNLILG---FPP----F--YPWAMLGGAL-WATGNIL 71 (254)
T ss_pred hHHHHHHHhcccceeeEecc-C-CCcHHHHHHHHHHHHHHHHHHHHhcC---CCc----c--eeHHHhhhhh-hhcCcee
Confidence 56788999999999999864 4 48887777765554444444433322 222 1 3344455555 5888888
Q ss_pred HHhhccccchhHHHHhhhhHHHHHHHHHH-H-hcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccC-C---
Q 017523 82 YFEGLYLSSSTVASAMTNLMPAVTFVMAF-I-AGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEF-I--- 155 (370)
Q Consensus 82 ~~~al~~~~~~~a~~i~~~~P~~~~lla~-~-~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~-~--- 155 (370)
-.-.++....+.+..+-++.-+++--..- + +++++.... +......+|+.++++|..+..+.+.+.....+. +
T Consensus 72 ~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~ 150 (254)
T PF07857_consen 72 VVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETP 150 (254)
T ss_pred ehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeecCCCCCccccccccc
Confidence 88899999999998887765555443332 2 344333222 234557788888888888776655443111100 0
Q ss_pred --CCC------c---ccccC------CCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017523 156 --PPK------S---LIFSS------GADNWLLGCFLLFGSSWFWSFWMILQVPIS 194 (370)
Q Consensus 156 --~~~------~---~~~~~------~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~ 194 (370)
.++ + ....+ ...+...|..+++++++.|+...+=...+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~ 206 (254)
T PF07857_consen 151 LSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQ 206 (254)
T ss_pred cccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHH
Confidence 000 0 00001 112467899999999999998766544443
No 102
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=93.59 E-value=0.07 Score=45.55 Aligned_cols=66 Identities=14% Similarity=0.162 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchh
Q 017523 249 ISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAED 314 (370)
Q Consensus 249 ~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~ 314 (370)
.+-++|..++++.+|+.++.+....-.+..+++++++||++..-.++.+++.+.|+++..+....+
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~ 130 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH 130 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence 356789999999999999999999999999999999999999999999999999999988755433
No 103
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.87 E-value=0.1 Score=45.82 Aligned_cols=73 Identities=15% Similarity=0.098 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHH
Q 017523 62 RTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITM 141 (370)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 141 (370)
..++-+.+.++.+ ++++.+.|.-..+-+|-..+++..+--+||++.+.++++.+++.+ ||+|..+.+.|..+=
T Consensus 239 ~~~~~l~l~ai~s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 239 YVFWDLTLLAIAS-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhH
Confidence 3377788889998 999999999999999988999999999999999999999999999 999999998887663
No 104
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.57 E-value=1.3 Score=40.56 Aligned_cols=113 Identities=13% Similarity=0.047 Sum_probs=85.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhhccccccc---ccchHHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhh
Q 017523 23 QGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRL---SLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTN 99 (370)
Q Consensus 23 ~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~ 99 (370)
.++++.++++.-++..++.-.... +.....++.+ +...+-++-+++.+.++ +++|.+.|+-++.-.+-.-++|.-
T Consensus 198 ~k~s~~~mM~~vNLf~~i~~~~~l-i~qg~~~~av~F~~~hp~~~~Di~l~s~~g-avGQ~FI~~TI~~FGslt~t~I~t 275 (327)
T KOG1581|consen 198 YKVSSLHMMFGVNLFSAILNGTYL-ILQGHLLPAVSFIKEHPDVAFDILLYSTCG-AVGQLFIFYTIERFGSLTFTTIMT 275 (327)
T ss_pred CCccHhHHHHHHHHHHHHHHHHhh-hcCCCCchHHHHHHcChhHHHHHHHHHHhh-hhhhheehhhHhhcccHHHHHHHH
Confidence 358999999999998887665542 2222222211 11123367778889998 888888888888777766777888
Q ss_pred hHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhh
Q 017523 100 LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMAL 143 (370)
Q Consensus 100 ~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 143 (370)
+==++..+++.+.++.++++. +|+|+.+.+.|..+=.+
T Consensus 276 tRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~~ 313 (327)
T KOG1581|consen 276 TRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEIL 313 (327)
T ss_pred HHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHHH
Confidence 888999999999999999999 99999999999877543
No 105
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.09 E-value=2.3 Score=39.29 Aligned_cols=124 Identities=15% Similarity=0.089 Sum_probs=82.6
Q ss_pred HHHHHHHHH----HHHHHHhhccCCch--hHHHHHHHHHHHHHHHHHHHHh--cCCcccccccchhHHHH--HHHHHHHH
Q 017523 178 GSSWFWSFW----MILQVPISSSIPNH--SYSSAWMCFLASLESATVALLV--EKNLEAWTLNSFLELAC--CLYSGIAL 247 (370)
Q Consensus 178 ~aa~~~a~~----~v~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~--~l~~gi~~ 247 (370)
.++++|++. .+..|.....++-| +....+|++.+.+.....-... +.+..+|.. ...|.. +++.+
T Consensus 15 ~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~--~kk~~P~~~lf~~--- 89 (314)
T KOG1444|consen 15 LSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRT--AKKWFPVSLLFVG--- 89 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHH--HHHHccHHHHHHH---
Confidence 344444443 44456655555434 4444589888887766655522 222222332 223332 23332
Q ss_pred HHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhe
Q 017523 248 AISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVL 308 (370)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~ 308 (370)
..+.-.+++++.+.....++...+|+.+.+...+++|-+++...+.....+++|.....
T Consensus 90 --~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~ 148 (314)
T KOG1444|consen 90 --MLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA 148 (314)
T ss_pred --HHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence 23334578999999999999999999999999999999999999999999998877653
No 106
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=91.45 E-value=1.6 Score=40.87 Aligned_cols=140 Identities=12% Similarity=0.063 Sum_probs=86.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH-HhcCCccc-ccccchhHHHHHHHHHH
Q 017523 168 NWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVAL-LVEKNLEA-WTLNSFLELACCLYSGI 245 (370)
Q Consensus 168 ~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~-~~~~~~~~~~~~l~~gi 245 (370)
.-..|.++-.+++++-+.+.+=.||. |+.+ --+.=..+.+++-++.-.+.. ..-++..+ ....+...+......|+
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws-WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS-WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc-CCcc-HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 46789999999999999999998884 4442 222222333443333322222 22232211 12223345555566777
Q ss_pred HHHHHHHHHHHHHhccCceee-ecchhhHHHHHHHHHHHHhcc-------cchhhhHhHHHHHHHhhhhhee
Q 017523 246 ALAISFFLQAWCISERGPLFC-AMFNPLCTVIVTVLAGLFLDE-------EIFMGSLIGAFAVIIGLYVVLW 309 (370)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~a~~~~~~~~~e-------~~~~~~~~G~~lI~~g~~l~~~ 309 (370)
-.+++-..|-.++|+.|.+.. ++..-+.-+++.++--++.|+ +-....++|.++.++|+.+.-+
T Consensus 82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~ 153 (344)
T PF06379_consen 82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGK 153 (344)
T ss_pred HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhH
Confidence 778888888999999987654 344445666666665554332 2233567899999999998865
No 107
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=89.35 E-value=2.5 Score=38.91 Aligned_cols=125 Identities=11% Similarity=0.089 Sum_probs=85.1
Q ss_pred HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHhccCceee
Q 017523 189 LQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWT--LNSFLELACCLYSGIALAISFFLQAWCISERGPLFC 266 (370)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~ 266 (370)
++++..++++=|+-.+.++..+-.......-...+...+.-. ..+...+.-++-.++++++=-.+-.|+++.++.+.-
T Consensus 34 ~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlY 113 (349)
T KOG1443|consen 34 YFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLY 113 (349)
T ss_pred HhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeee
Confidence 445555556557777776666544444333333332211111 111112222334555666667778899999999999
Q ss_pred ecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccch
Q 017523 267 AMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAE 313 (370)
Q Consensus 267 s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~ 313 (370)
++.-...++|-.+++.++-=|++++.-.+-..+|-+|+++..+.+.+
T Consensus 114 TM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq 160 (349)
T KOG1443|consen 114 TMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ 160 (349)
T ss_pred eeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc
Confidence 99999999999999999999999999999999999999998886543
No 108
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=89.32 E-value=3 Score=36.62 Aligned_cols=111 Identities=13% Similarity=0.029 Sum_probs=88.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhccccc--ccccchHHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHH
Q 017523 25 LSPRVFVVYRQGTAALIMAPIVYISTRKSSY--RLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMP 102 (370)
Q Consensus 25 ~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P 102 (370)
...+..++|..+++..+++.+.+..+.+... .-..+...+.++++.|++. +.-.++.-+.++.++.+.-+++..+.-
T Consensus 183 f~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s-vgiSy~saWcvrVtSSTtySMvGALNK 261 (309)
T COG5070 183 FKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS-VGISYCSAWCVRVTSSTTYSMVGALNK 261 (309)
T ss_pred cchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH-hhhhhccceeEeehhhhHHHHHHHhhh
Confidence 6678889999999999998888777654432 1122333366888889997 777788888999999999999999988
Q ss_pred HHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523 103 AVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA 142 (370)
Q Consensus 103 ~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 142 (370)
.-..+-+.++++|+.+.. ++..+++++...++-.
T Consensus 262 lp~alaGlvffdap~nf~------si~sillGflsg~iYa 295 (309)
T COG5070 262 LPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYA 295 (309)
T ss_pred ChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHH
Confidence 888888999999999988 8999888887665543
No 109
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=89.28 E-value=3.7 Score=31.44 Aligned_cols=110 Identities=18% Similarity=0.254 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCC------chhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHH
Q 017523 2 AMVALQFLYAGVALFTRVALVQGLS------PRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGV 75 (370)
Q Consensus 2 ~~~~~~~~~g~~~~~~k~~~~~g~~------p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 75 (370)
.+++..++||....+.|..... .+ .-...+.|......+ +++ +.+.-++.
T Consensus 7 ~lvaVgllWG~Tnplirrgs~g-~~~v~~~~~k~~~~lqe~~tl~l------------------~w~----Y~iPFllN- 62 (125)
T KOG4831|consen 7 KLVAVGLLWGATNPLIRRGSLG-WDKVKSSSRKIMIALQEMKTLFL------------------NWE----YLIPFLLN- 62 (125)
T ss_pred HHHHHHHHHccccHHHHHHHhh-HhhccCchHHHHHHHHHHHHHHH------------------hHH----HHHHHHHH-
Confidence 3678889999999999997642 22 233334443332110 111 11112222
Q ss_pred hHHHHHHHhhccccchhHHHHhhh-hHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHH
Q 017523 76 TANQNAYFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITM 141 (370)
Q Consensus 76 ~~~~~~~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll 141 (370)
--+..+||.-++..+.+.+..+.+ ++-.|+.+.+..+..|....+ .++|..+.++|..++
T Consensus 63 qcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~------a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 63 QCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGL------ALLGTSLIVFGIWLC 123 (125)
T ss_pred HhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccce------eehhhhHHhhhhhhe
Confidence 223457777888888888888877 466667777776655555555 889999999998765
No 110
>PRK02237 hypothetical protein; Provisional
Probab=87.05 E-value=3.1 Score=32.04 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=39.6
Q ss_pred ecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccc
Q 017523 267 AMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKA 312 (370)
Q Consensus 267 s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~ 312 (370)
+.+.-.-.+.+.++++.+-|++++...++|+++.++|..+..+.++
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 4456677788899999999999999999999999999988877553
No 111
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=83.68 E-value=1.4 Score=40.07 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhee
Q 017523 246 ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLW 309 (370)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~ 309 (370)
|-..+..+.+.++..+.++...++...-.+|+.+++.-+++.+++..+|+|...+.+|++.+-.
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 3444555666777788888888888889999999999999999999999999999999988743
No 112
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=80.67 E-value=2.5 Score=32.45 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=37.6
Q ss_pred chhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccc
Q 017523 269 FNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKA 312 (370)
Q Consensus 269 ~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~ 312 (370)
+.-.-.+.+.++++.+-|++|+...++|+++.++|..+..+.+|
T Consensus 63 YGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 63 YGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred hhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 34455677889999999999999999999999999999887654
No 113
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=80.16 E-value=39 Score=29.35 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=22.7
Q ss_pred HHHHHHHhcccchhhhHhHHHHHH--Hhhhhhee
Q 017523 278 TVLAGLFLDEEIFMGSLIGAFAVI--IGLYVVLW 309 (370)
Q Consensus 278 ~~~~~~~~~e~~~~~~~~G~~lI~--~g~~l~~~ 309 (370)
-.+|..++.+..-+-++.|..|.+ +|......
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~ 166 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLAR 166 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 446888888888888888888865 45444443
No 114
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=79.11 E-value=4.6 Score=30.92 Aligned_cols=59 Identities=10% Similarity=0.131 Sum_probs=44.8
Q ss_pred HHHHHHHHHhccCceeeecchh-hHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhe
Q 017523 250 SFFLQAWCISERGPLFCAMFNP-LCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVL 308 (370)
Q Consensus 250 ~~~~~~~~l~~~~~~~~s~~~~-l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~ 308 (370)
+..+|++-+++.+-+.+..+.+ +...++.+++...-.|......++|..++++|+++..
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 3456777788888777766654 6778888888875555566668899999999998864
No 115
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=78.83 E-value=22 Score=37.71 Aligned_cols=26 Identities=15% Similarity=-0.012 Sum_probs=21.1
Q ss_pred hHHHHhhhhHHHHHHHHHHHhccccc
Q 017523 92 TVASAMTNLMPAVTFVMAFIAGWEKV 117 (370)
Q Consensus 92 ~~a~~i~~~~P~~~~lla~~~~~E~~ 117 (370)
+.+.++..++|+-.+.++.....+|.
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~ 36 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKG 36 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcc
Confidence 56778888999999999888766664
No 116
>PF10101 DUF2339: Predicted membrane protein (DUF2339); InterPro: IPR019286 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=78.09 E-value=97 Score=32.72 Aligned_cols=99 Identities=21% Similarity=0.202 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhCC-CCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH--HHhhc
Q 017523 10 YAGVALFTRVALVQG-LSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA--YFEGL 86 (370)
Q Consensus 10 ~g~~~~~~k~~~~~g-~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~al 86 (370)
-=+...+.|.+.++| .+|..=+..-..++..++.. ..+.+||+. +.....+..|.++ .++... -+.=+
T Consensus 15 ~lG~~fl~kya~~~g~l~p~~Rv~~g~~~g~~l~~~-g~~l~~k~~-------~~~~~~L~g~G~a-~ly~t~~aa~~~y 85 (745)
T PF10101_consen 15 LLGVVFLLKYAIDAGWLGPAVRVALGAALGLALLAA-GERLRRKGY-------RAFAQALAGGGIA-VLYLTVFAAYHLY 85 (745)
T ss_pred HHHHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHH-HHHHHHccc-------chHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 334455789998887 77765444444444333322 222233211 2133344433333 333222 22223
Q ss_pred cccchhHHHHhhhhHHHHHHHHHHHhccccc
Q 017523 87 YLSSSTVASAMTNLMPAVTFVMAFIAGWEKV 117 (370)
Q Consensus 87 ~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~ 117 (370)
+..|+..+-++....-..+..++....+|.+
T Consensus 86 ~l~~~~~af~~~~~v~~~~~~la~r~~~~~l 116 (745)
T PF10101_consen 86 GLIPPPVAFALLALVTAAAVALALRYDSPAL 116 (745)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4467777777777777777777776555555
No 117
>PRK12650 putative monovalent cation/H+ antiporter subunit A; Reviewed
Probab=78.00 E-value=1.1e+02 Score=33.44 Aligned_cols=48 Identities=8% Similarity=0.180 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhc
Q 017523 64 FGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAG 113 (370)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~ 113 (370)
+.-++..|+.+..... .|.-+.=-.++.+++..-+.-....++....+
T Consensus 622 l~av~~~g~~G~~~al--~f~~~~APDvAlTq~~Vetlt~vl~~l~l~~l 669 (962)
T PRK12650 622 LAAVVLVGVVGVGVTL--QMLTLGAPDVALTQLLVEALTVVVMMLVLRRQ 669 (962)
T ss_pred HHHHHHHHHHHHHHHH--HHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566777777643333 33334434566666665553334444444333
No 118
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.62 E-value=8.4 Score=35.06 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHHHHHHHHHHhhccc----ccccccchHHHHHHHHHHHHHHhHH
Q 017523 4 VALQFLYAGVALFTRVALVQ-GLSPRVFVVYRQGTAALIMAPIVYISTRKS----SYRLSLGLRTFGWLFVASLIGVTAN 78 (370)
Q Consensus 4 ~~~~~~~g~~~~~~k~~~~~-g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~ 78 (370)
+++.+.-+.+.+-.|..+.. |---+.+.++..+.+.++++|...+.+.-+ .|++ +..+.|..+.+.|++++. .
T Consensus 191 VlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l-~a~~Fw~~mtLsglfgF~-m 268 (347)
T KOG1442|consen 191 VLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHL-PAIKFWILMTLSGLFGFA-M 268 (347)
T ss_pred HHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccc-hHHHHHHHHHHHHHHHHH-h
Confidence 34556666677777754432 233578899999999999999987754311 1222 223436667777888733 3
Q ss_pred HHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcC
Q 017523 79 QNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKG 146 (370)
Q Consensus 79 ~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~ 146 (370)
.+.-..-++.++|-.-.+=...-...=.++|..++.|..+.. .|.+.++.++|-..-+..++
T Consensus 269 gyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~l------wwtsn~~vLvgs~~YT~vk~ 330 (347)
T KOG1442|consen 269 GYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGL------WWTSNIVVLVGSLAYTLVKE 330 (347)
T ss_pred hheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhh------eeeeeEEEEehhHHHHHHHH
Confidence 344445566665522111112223334577888899999888 89999999999888766544
No 119
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=72.54 E-value=4.3 Score=31.07 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=26.4
Q ss_pred HHHHHHHhcccchhhhHhHHHHHHHhhhhh
Q 017523 278 TVLAGLFLDEEIFMGSLIGAFAVIIGLYVV 307 (370)
Q Consensus 278 ~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~ 307 (370)
+.+++++++|++++..+.|.++++.+++.+
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 567889999999999999999999887654
No 120
>PRK02237 hypothetical protein; Provisional
Probab=72.24 E-value=43 Score=25.89 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=37.0
Q ss_pred ccc-cchhHHHHhhh-hHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523 86 LYL-SSSTVASAMTN-LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA 142 (370)
Q Consensus 86 l~~-~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 142 (370)
++- ...+.+-+-.- ..-+...+..+..-++|++.. .++|..++++|+.++.
T Consensus 52 l~p~~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~------D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 52 LQPDAAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRW------DWIGAAICLVGMAVIM 104 (109)
T ss_pred cCCchhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChh------HHHhHHHHHHhHHHhe
Confidence 443 33444444433 455556677788889999999 9999999999998874
No 121
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=71.78 E-value=13 Score=28.70 Aligned_cols=52 Identities=10% Similarity=0.166 Sum_probs=38.6
Q ss_pred hccccchhHHHHhhh-hHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523 85 GLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA 142 (370)
Q Consensus 85 al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 142 (370)
.++-.+.+.+-+-.- ..-+...+..+.+-++|++.. .++|..++++|+.++.
T Consensus 50 Tl~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~------D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 50 TLQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRW------DWIGAAICLVGVAIIL 102 (107)
T ss_pred hcCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChH------HHHhHHHHHHhHHheE
Confidence 344444555444433 455666777888889999999 9999999999999885
No 122
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=71.01 E-value=14 Score=35.08 Aligned_cols=31 Identities=13% Similarity=0.011 Sum_probs=16.2
Q ss_pred HHHHHHHhcccccccccccccceeeeh-hhhhhhhHHHhhh
Q 017523 105 TFVMAFIAGWEKVHNRSLRSIAKILGT-IFCVGGAITMALL 144 (370)
Q Consensus 105 ~~lla~~~~~E~~~~~~~~~~~~~~g~-~l~~~Gv~ll~~~ 144 (370)
..++..++++-|. .-+|+ ..+-+|++++++.
T Consensus 3 ~vvl~~I~~GaR~---------GGiglG~~gg~G~~il~~~ 34 (364)
T PF03605_consen 3 IVVLGAIFLGARL---------GGIGLGLAGGLGVAILVFG 34 (364)
T ss_pred hHHHHHHHHhhcc---------cchHHHHHHHHHHHHHHHh
Confidence 3456666777666 23332 3344456666554
No 123
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=68.99 E-value=9.1 Score=34.77 Aligned_cols=113 Identities=18% Similarity=0.198 Sum_probs=76.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhccccccc----ccchHHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhh
Q 017523 24 GLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRL----SLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTN 99 (370)
Q Consensus 24 g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~ 99 (370)
+-+...++++...++...+...+.....- .+.+ ..+.|.....++.+..+ .+++.+-..=++.-.+..+..+..
T Consensus 217 ~~ss~EmvfySy~iG~vflf~~mvlTge~-f~a~~fcaehp~~tyGy~~~~s~~g-ylG~~~VLalI~~fGA~~aatvTT 294 (367)
T KOG1582|consen 217 PASSSEMVFYSYGIGFVFLFAPMVLTGEL-FSAWTFCAEHPVRTYGYAFLFSLAG-YLGIVFVLALIKLFGALIAATVTT 294 (367)
T ss_pred CCCcceEEEeeecccHHHHHHHHHhcccc-hhhhHHHHhCcHhHHHHHHHHHHHh-HhhHHHHHHHHHHhchhHHHHHHH
Confidence 35677788888888888777665554321 1111 11123355556656555 444444444445557777777877
Q ss_pred hHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhh
Q 017523 100 LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALL 144 (370)
Q Consensus 100 ~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~ 144 (370)
.--.+|.+++++++..+++.. ...+.++.+.|+.+=...
T Consensus 295 aRKavTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~ys 333 (367)
T KOG1582|consen 295 ARKAVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNMYS 333 (367)
T ss_pred hHhHHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhccc
Confidence 888899999999999999988 888999999999885443
No 124
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=68.40 E-value=1.6 Score=39.42 Aligned_cols=32 Identities=0% Similarity=0.032 Sum_probs=0.0
Q ss_pred ccccchhHHHHhhhhHHHHHH-HHHHHhccccc
Q 017523 86 LYLSSSTVASAMTNLMPAVTF-VMAFIAGWEKV 117 (370)
Q Consensus 86 l~~~~~~~a~~i~~~~P~~~~-lla~~~~~E~~ 117 (370)
++-.+-+..+++.+.+-+.++ ++-.+++|+|+
T Consensus 44 msd~t~~a~~vl~sfAvvliiIIiIImlF~RrL 76 (381)
T PF05297_consen 44 MSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRL 76 (381)
T ss_dssp ---------------------------------
T ss_pred HhccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444555544444433 33344455554
No 125
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=66.52 E-value=5.1 Score=31.83 Aligned_cols=20 Identities=10% Similarity=0.238 Sum_probs=9.7
Q ss_pred HhHHHHHHHhhhhheeccch
Q 017523 294 LIGAFAVIIGLYVVLWGKAE 313 (370)
Q Consensus 294 ~~G~~lI~~g~~l~~~~~~~ 313 (370)
++|.+++++.++.+.++.+|
T Consensus 74 ~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45555555555555544433
No 126
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.36 E-value=16 Score=27.66 Aligned_cols=31 Identities=13% Similarity=0.299 Sum_probs=27.8
Q ss_pred HHHHHHHhcccchhhhHhHHHHHHHhhhhhe
Q 017523 278 TVLAGLFLDEEIFMGSLIGAFAVIIGLYVVL 308 (370)
Q Consensus 278 ~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~ 308 (370)
+.++++.++|++.+-++.|..+++.|++...
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 5579999999999999999999999988764
No 127
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=59.92 E-value=1.8e+02 Score=28.61 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccch
Q 017523 246 ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAE 313 (370)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~ 313 (370)
+.-..|.+| .|++..+...-+.. -.--+..-+...++|.++.++.+.....+...
T Consensus 253 ~~Y~~yL~~-SAlss~P~~~CNp~------------~~~~~~~~~~~~iig~i~~~~~v~yss~ra~~ 307 (429)
T PF03348_consen 253 SLYTTYLTW-SALSSEPDKECNPS------------GSRSGSWNTWQSIIGLIFTFVSVLYSSFRASS 307 (429)
T ss_pred HHHHHHHHH-HHHHcCCCcccCCc------------ccccCCcchHHHHHHHHHHHHHHHHhcccccc
Confidence 334445555 56666665555555 00123345667789999998888777665443
No 128
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=58.98 E-value=34 Score=26.23 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=38.5
Q ss_pred ecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccc
Q 017523 267 AMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKA 312 (370)
Q Consensus 267 s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~ 312 (370)
+.+.-.-++.+.++.+.+=|.+++...++|+++-++|..+..+.++
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 3456677788899999999999999999999999999877777643
No 129
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=57.00 E-value=2.1 Score=38.36 Aligned_cols=137 Identities=13% Similarity=0.073 Sum_probs=85.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHH
Q 017523 168 NWLLGCFLLFGSSWFWSFWMILQVPISSS-IPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIA 246 (370)
Q Consensus 168 ~~~~G~~l~l~aa~~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~ 246 (370)
+.+.|..++-+=.+|-.........+.++ ...|...++.....-+++..++.++..+. ....|.--..+++.
T Consensus 15 k~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~-------~~~~~~hYilla~~ 87 (336)
T KOG2766|consen 15 KTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKY-------IKAKWRHYILLAFV 87 (336)
T ss_pred hhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHH-------HHHHHHHhhheeEE
Confidence 33444444433333433444444444433 32466666666655555555555533211 11122222223333
Q ss_pred HHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheecc
Q 017523 247 LAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGK 311 (370)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~ 311 (370)
..=+-++-..|.++++-+.+..+.....+...+++|++++-+-.+.++.|.++-++|+.++....
T Consensus 88 DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sD 152 (336)
T KOG2766|consen 88 DVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSD 152 (336)
T ss_pred eecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEee
Confidence 33344445677788888888888888899999999999999999999999999999999987654
No 130
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=54.18 E-value=1.5e+02 Score=29.21 Aligned_cols=12 Identities=8% Similarity=0.086 Sum_probs=5.3
Q ss_pred HHHHHHHhhhhh
Q 017523 296 GAFAVIIGLYVV 307 (370)
Q Consensus 296 G~~lI~~g~~l~ 307 (370)
+++++++.+.++
T Consensus 181 a~~v~l~~i~~~ 192 (437)
T TIGR00939 181 PCVVQLICIVCY 192 (437)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 131
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=53.53 E-value=4.5 Score=36.70 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhccCceeeecchh
Q 017523 246 ALAISFFLQAWCISERGPLFCAMFNP 271 (370)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~s~~~~ 271 (370)
.-+++.++|.|.+++.+++.-+++.+
T Consensus 117 lLaL~vW~Ym~lLr~~GAs~WtiLaF 142 (381)
T PF05297_consen 117 LLALGVWFYMWLLRELGASFWTILAF 142 (381)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34456677788899999988877654
No 132
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=52.04 E-value=1e+02 Score=30.98 Aligned_cols=16 Identities=6% Similarity=-0.137 Sum_probs=8.9
Q ss_pred chhHHHHHHHHHHHHH
Q 017523 199 NHSYSSAWMCFLASLE 214 (370)
Q Consensus 199 ~~~~~~~~~~~~~~i~ 214 (370)
.|......+..+..++
T Consensus 330 ~P~~a~~~~~~i~~l~ 345 (507)
T TIGR00910 330 VPVPLVIIQGIITSIA 345 (507)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4666655665555543
No 133
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=47.58 E-value=22 Score=28.75 Aligned_cols=16 Identities=19% Similarity=0.619 Sum_probs=10.0
Q ss_pred hHhHHHHHHHhhhhhe
Q 017523 293 SLIGAFAVIIGLYVVL 308 (370)
Q Consensus 293 ~~~G~~lI~~g~~l~~ 308 (370)
.++|..+++.|+....
T Consensus 89 ~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 89 IIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777777765553
No 134
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=46.78 E-value=3.1e+02 Score=27.32 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=19.1
Q ss_pred chhhhHhHHHHHHHhhhhheecc
Q 017523 289 IFMGSLIGAFAVIIGLYVVLWGK 311 (370)
Q Consensus 289 ~~~~~~~G~~lI~~g~~l~~~~~ 311 (370)
++..|++...++++|++++.+.+
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 78889999999999988876543
No 135
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=45.85 E-value=1.2e+02 Score=28.42 Aligned_cols=170 Identities=14% Similarity=0.091 Sum_probs=0.0
Q ss_pred cccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCCchHHHHHHHHHHHHHHHH--------H
Q 017523 115 EKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSF--------W 186 (370)
Q Consensus 115 E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~--------~ 186 (370)
+++++. +.|..++..|+..+...-.. ........|.++..++.+.|.. +
T Consensus 1 k~~~~~-------~f~~~mGtg~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~ 57 (330)
T PF03595_consen 1 KHFPPA-------WFGMVMGTGGLSNLLYLLPY----------------HFGGLAILSEVLFILALILFLVLLVLYLLRW 57 (330)
T ss_dssp --S-GG-------GGHHHHHHHHHHHHHHTTTT----------------TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHH-------HHHHHHHHHHHHHHHHHHHH----------------hccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHH-HHHHHHHHHHHHHhccCcee
Q 017523 187 MILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGI-ALAISFFLQAWCISERGPLF 265 (370)
Q Consensus 187 ~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi-~~~~~~~~~~~~l~~~~~~~ 265 (370)
...-|+..++..||....++.....+..........-.............|.......+ .-.+.+..+..--.+.+...
T Consensus 58 ~~~~~~~~~el~~p~~~~f~~t~~m~~~~l~~~~~~~~~~~~~~~~~~lw~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 137 (330)
T PF03595_consen 58 IRYPKAFKAELRHPVRSSFFPTFPMALMLLAAFISPYGGPWSPSLALVLWWIGVILHLVLSVIFVFRWFRKQPFKLEHIN 137 (330)
T ss_dssp HH-HHHHHHHHHSTTGGGGGGHHHHHHHHHHHHHTTT-----HHHHHHHHHHHHHHHHHHHHHHTGGGGG-SSS-GGG--
T ss_pred HhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhheehhccCcccccccc
Q ss_pred eecchhhHHHHHHHHHHHHhcccchh-----hhHhHHHHHHHhhhhh
Q 017523 266 CAMFNPLCTVIVTVLAGLFLDEEIFM-----GSLIGAFAVIIGLYVV 307 (370)
Q Consensus 266 ~s~~~~l~pv~a~~~~~~~~~e~~~~-----~~~~G~~lI~~g~~l~ 307 (370)
-+-+...-+........-.+++.... ...++.++...|..+.
T Consensus 138 p~w~lp~Vg~~v~~~~g~~l~~~~~~~~~~~~~~~~~~~~g~G~~l~ 184 (330)
T PF03595_consen 138 PSWFLPPVGIMVSAVAGANLGPALPGAQALWIIVISYFLFGIGFFLY 184 (330)
T ss_dssp GGGHHHHTHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHH
T ss_pred eeeeecchhHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHH
No 136
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=45.56 E-value=73 Score=27.28 Aligned_cols=42 Identities=7% Similarity=0.037 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHH
Q 017523 64 FGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMA 109 (370)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla 109 (370)
+++.++..... .+-+.+.+.+-.+.|++..-. +.|+.-.+++
T Consensus 161 ~~K~~lv~~~s-m~lWi~v~i~t~~lPtslN~~---L~pi~l~IiG 202 (226)
T COG4858 161 TWKYLLVAVLS-MLLWIAVMIATVFLPTSLNPQ---LPPIALTIIG 202 (226)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHhhCCCcCCcC---CchHHHHHHH
Confidence 55555555554 334444445555566554432 3444444433
No 137
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=45.20 E-value=2.3e+02 Score=25.52 Aligned_cols=57 Identities=14% Similarity=-0.111 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHH
Q 017523 239 CCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAF 298 (370)
Q Consensus 239 ~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~ 298 (370)
.+.|..+.+++. ...+.++.++.....-..++=..=.+-..+++.-.-+...-.+++
T Consensus 100 v~~yv~~~G~vs---f~vcy~~gp~~~~rs~~~v~W~Lqligl~lI~~ss~~~~~a~~~i 156 (249)
T PF10225_consen 100 VLGYVLVVGLVS---FAVCYRYGPPVDPRSRNFVKWALQLIGLVLIYFSSQDPEFAFAAI 156 (249)
T ss_pred HHHHHHHHHHHH---HHhhcccCCCccHhHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 334454433333 334455677777776666666655555555555444444333333
No 138
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=44.58 E-value=95 Score=23.86 Aligned_cols=37 Identities=11% Similarity=0.304 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523 100 LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA 142 (370)
Q Consensus 100 ~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 142 (370)
..-+...+..++.=+.++++. .++|..+|++|+.++.
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~------D~~Ga~icl~G~~vil 103 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRY------DWIGAAICLAGVAVIL 103 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHH------HhhhHHHHHhceeeeE
Confidence 445555666677788899999 9999999999988875
No 139
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=44.13 E-value=26 Score=22.16 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=9.2
Q ss_pred chhhhHhHHHHHHHhhhh
Q 017523 289 IFMGSLIGAFAVIIGLYV 306 (370)
Q Consensus 289 ~~~~~~~G~~lI~~g~~l 306 (370)
++|..++=.++|+.|++.
T Consensus 2 p~wlt~iFsvvIil~If~ 19 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIFA 19 (49)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 345555555555555543
No 140
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=43.43 E-value=22 Score=29.86 Aligned_cols=7 Identities=0% Similarity=0.107 Sum_probs=3.4
Q ss_pred ccccccc
Q 017523 330 QTRTVQV 336 (370)
Q Consensus 330 ~~~~~~~ 336 (370)
+.|-.|+
T Consensus 138 ~~Em~pL 144 (163)
T PF06679_consen 138 NVEMAPL 144 (163)
T ss_pred cceeccc
Confidence 3444455
No 141
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=42.60 E-value=2e+02 Score=27.43 Aligned_cols=10 Identities=0% Similarity=0.238 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 017523 273 CTVIVTVLAG 282 (370)
Q Consensus 273 ~pv~a~~~~~ 282 (370)
-|+...+++-
T Consensus 111 lpi~~~l~g~ 120 (385)
T PF03547_consen 111 LPILQALFGE 120 (385)
T ss_pred HHHHHHHhcc
Confidence 4444444443
No 142
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=42.21 E-value=1.6e+02 Score=28.74 Aligned_cols=40 Identities=10% Similarity=0.161 Sum_probs=23.8
Q ss_pred hhhhHHHHHHHHHHHhc--ccccccccccccceeeehhhhhhhhHHHh
Q 017523 97 MTNLMPAVTFVMAFIAG--WEKVHNRSLRSIAKILGTIFCVGGAITMA 142 (370)
Q Consensus 97 i~~~~P~~~~lla~~~~--~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 142 (370)
+....|-+..=+.+.++ +-+...| -++.+++..+|.+++.
T Consensus 66 ladi~P~l~~Kl~aP~fi~~v~y~~R------i~~~~~l~~~g~l~va 107 (402)
T PF02487_consen 66 LADILPSLLVKLIAPFFIHRVPYWIR------ILICVALSAAGMLLVA 107 (402)
T ss_pred HHHHHHHHHHHHHhHhhhhhccchHH------HHHHHHHHHHHHhhee
Confidence 33466777653333333 3333455 6777788888888875
No 143
>COG4665 FcbT2 TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.08 E-value=2.1e+02 Score=24.12 Aligned_cols=47 Identities=15% Similarity=0.076 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 017523 3 MVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYIST 50 (370)
Q Consensus 3 ~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~ 50 (370)
+++.+++-+..+++.|.+.+. -+...+=.=-+++++++++..++-.+
T Consensus 25 Lvl~~vl~~~~nvv~Ry~~N~-sSna~lEaqWyLF~~vFllaaaYtL~ 71 (182)
T COG4665 25 LVLVAVLVSAGNVVMRYAFNM-SSNAWLEAQWYLFGAVFLLAAAYTLK 71 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466778888999999999875 45555555567888888877666543
No 144
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=41.80 E-value=2.3e+02 Score=24.64 Aligned_cols=30 Identities=7% Similarity=-0.033 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhccccchhHH
Q 017523 64 FGWLFVASLIGVTANQNAYFEGLYLSSSTVA 94 (370)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a 94 (370)
+++.++.+++. .+.....+...+..++...
T Consensus 146 ~~k~~~~~~~~-~~~w~~~~~~~~~lp~~in 175 (206)
T PF06570_consen 146 WWKYILISVLA-MVLWIVIFVLTSFLPPVIN 175 (206)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHccccCC
Confidence 55555555554 3444444444444555533
No 145
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional
Probab=40.52 E-value=1.7e+02 Score=28.99 Aligned_cols=44 Identities=11% Similarity=0.014 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-----------HHHhhccCCchhHHHHHHHHHHHH
Q 017523 169 WLLGCFLLFGSSWFWSFWMIL-----------QVPISSSIPNHSYSSAWMCFLASL 213 (370)
Q Consensus 169 ~~~G~~l~l~aa~~~a~~~v~-----------~~~~~~~~~~~~~~~~~~~~~~~i 213 (370)
+.-|..+.+.+..+||.|+-- .|-+. +..+|+.+....++++.+
T Consensus 72 ~~~glGl~Im~~~GFa~YM~hIGA~~~lV~~~~kPL~-~ik~pYlll~~~~llg~l 126 (455)
T PRK09804 72 RIAGLGLSIMAVGGYARYMERIGASRAMVSLLSRPLK-LIRSPYIILSATYVIGQI 126 (455)
T ss_pred ccccHHHHHHHHHhHHHHHHhhCccHHHHHHHHHHHH-hcCCchhHHHHHHHHHHH
Confidence 345667777788888887643 33332 333466555555555544
No 146
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=40.40 E-value=43 Score=30.69 Aligned_cols=68 Identities=9% Similarity=0.099 Sum_probs=56.6
Q ss_pred HHHHHHHHHhc-cCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchhhHH
Q 017523 250 SFFLQAWCISE-RGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAEDLEE 317 (370)
Q Consensus 250 ~~~~~~~~l~~-~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~~~~ 317 (370)
.-++..++++. ++-..--++..-.++...+++|++.|.+-+..|+....++-+|+.+....+.++.+.
T Consensus 77 vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 77 VNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred eeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 34455666664 566677788889999999999999999999999999999999999999887766544
No 147
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=40.37 E-value=4.1e+02 Score=26.90 Aligned_cols=13 Identities=8% Similarity=-0.289 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHH
Q 017523 271 PLCTVIVTVLAGL 283 (370)
Q Consensus 271 ~l~pv~a~~~~~~ 283 (370)
...|+-+.++|.+
T Consensus 354 g~~~lGsll~G~l 366 (524)
T PF05977_consen 354 GGMPLGSLLWGFL 366 (524)
T ss_pred HHHHHHHHHHHHH
Confidence 3445545555554
No 148
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=38.55 E-value=26 Score=28.62 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=17.8
Q ss_pred HhccCceeeecchhhHHHHHHHHHHHH
Q 017523 258 ISERGPLFCAMFNPLCTVIVTVLAGLF 284 (370)
Q Consensus 258 l~~~~~~~~s~~~~l~pv~a~~~~~~~ 284 (370)
+...+....+.+.|+.|.++.+++.+.
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566777788888877766654
No 149
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=38.30 E-value=2.4e+02 Score=27.63 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 017523 296 GAFAVII 302 (370)
Q Consensus 296 G~~lI~~ 302 (370)
+.+.++.
T Consensus 407 ~~~~li~ 413 (455)
T TIGR00892 407 GSIVVSA 413 (455)
T ss_pred hHHHHHH
Confidence 3333333
No 150
>PF15102 TMEM154: TMEM154 protein family
Probab=38.09 E-value=32 Score=28.19 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=11.8
Q ss_pred HhHHHHHHHhhhhheeccchh
Q 017523 294 LIGAFAVIIGLYVVLWGKAED 314 (370)
Q Consensus 294 ~~G~~lI~~g~~l~~~~~~~~ 314 (370)
++++.|++..++++.+.|||+
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKR 86 (146)
T ss_pred HHHHHHHHHHHHheeEEeecc
Confidence 445555666666666555444
No 151
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=37.18 E-value=2.7e+02 Score=27.82 Aligned_cols=57 Identities=18% Similarity=0.087 Sum_probs=39.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHH--HHHHHHHHHHHHHHHH
Q 017523 164 SGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSS--AWMCFLASLESATVAL 220 (370)
Q Consensus 164 ~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~ 220 (370)
+++...++|-+.+..+.++-....++.+++.+.+|+..+.. -..+..+.....++.+
T Consensus 281 ~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~ 339 (493)
T KOG1330|consen 281 DHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLF 339 (493)
T ss_pred ccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHH
Confidence 55667889999999999999999999999887776533332 2344444444444444
No 152
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=36.73 E-value=2.2e+02 Score=24.82 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHhccccc-------ccccccccceeeehhhhhhhhHHHh
Q 017523 99 NLMPAVTFVMAFIAGWEKV-------HNRSLRSIAKILGTIFCVGGAITMA 142 (370)
Q Consensus 99 ~~~P~~~~lla~~~~~E~~-------~~~~~~~~~~~~g~~l~~~Gv~ll~ 142 (370)
...|....++++.+.+||. +.+-+++..+..+.++.++|+.++.
T Consensus 160 ~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~~l~~ 210 (214)
T PF11139_consen 160 ASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGALLLG 210 (214)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 4678888888888887655 2222345557788888999998874
No 153
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=36.64 E-value=1.6e+02 Score=22.18 Aligned_cols=53 Identities=11% Similarity=0.091 Sum_probs=27.7
Q ss_pred HHHHhccCceeeecchhhHHHHHHHHHHH---Hhccc-chhhhHhHHHHHHHhhhhh
Q 017523 255 AWCISERGPLFCAMFNPLCTVIVTVLAGL---FLDEE-IFMGSLIGAFAVIIGLYVV 307 (370)
Q Consensus 255 ~~~l~~~~~~~~s~~~~l~pv~a~~~~~~---~~~e~-~~~~~~~G~~lI~~g~~l~ 307 (370)
..++++++...--.+-.++.+++++++.+ +.++. +-...|.|+..=+.+.-+.
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~ 78 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLF 78 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHH
Confidence 45566655545555555566666666544 33322 3333566765555544443
No 154
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=36.59 E-value=4.5e+02 Score=26.35 Aligned_cols=34 Identities=18% Similarity=0.164 Sum_probs=17.7
Q ss_pred ecchhhHHHHHHHHHHH-----HhcccchhhhHhHHHHH
Q 017523 267 AMFNPLCTVIVTVLAGL-----FLDEEIFMGSLIGAFAV 300 (370)
Q Consensus 267 s~~~~l~pv~a~~~~~~-----~~~e~~~~~~~~G~~lI 300 (370)
+.+..+....+.+++-. ++|..-.|..+++.-++
T Consensus 154 g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i 192 (485)
T KOG0569|consen 154 GTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLI 192 (485)
T ss_pred HHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHH
Confidence 34444444444555422 45666666666665555
No 155
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=36.47 E-value=6 Score=29.57 Aligned_cols=35 Identities=11% Similarity=0.220 Sum_probs=14.5
Q ss_pred HHHHHhcccchhhhHhHHHHHHHhhhhheeccchh
Q 017523 280 LAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAED 314 (370)
Q Consensus 280 ~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~ 314 (370)
+++.+-+|.+-....+...+|+.=+---.|.+++.
T Consensus 9 fdyal~K~~~FA~L~i~~FiILLIi~~~IW~~~r~ 43 (121)
T PF10669_consen 9 FDYALTKIMFFAFLFIVVFIILLIITKSIWHDSRQ 43 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33333333333333333344443333346766643
No 156
>PRK10263 DNA translocase FtsK; Provisional
Probab=36.32 E-value=3.1e+02 Score=31.07 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHHhccc
Q 017523 99 NLMPAVTFVMAFIAGWE 115 (370)
Q Consensus 99 ~~~P~~~~lla~~~~~E 115 (370)
++.|++.++.++++++.
T Consensus 84 YLLP~LL~~~a~~l~R~ 100 (1355)
T PRK10263 84 YTIPVIIVGGCWFAWRH 100 (1355)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34455555556655443
No 157
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=35.77 E-value=3e+02 Score=27.10 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=28.6
Q ss_pred chhhHHHHHHHHHHHHhccc-chhhhHhHHHHHHHhhhhheeccchhh
Q 017523 269 FNPLCTVIVTVLAGLFLDEE-IFMGSLIGAFAVIIGLYVVLWGKAEDL 315 (370)
Q Consensus 269 ~~~l~pv~a~~~~~~~~~e~-~~~~~~~G~~lI~~g~~l~~~~~~~~~ 315 (370)
-..+.|+++.+ +++.++-. -......|++.+++|+++....|.+++
T Consensus 165 GGal~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 165 GGALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred ccchHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 34456666655 66666533 333455688888899888876555443
No 158
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=35.51 E-value=2.4e+02 Score=24.48 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 017523 170 LLGCFLLFGSSWFWSFWMILQVPI 193 (370)
Q Consensus 170 ~~G~~l~l~aa~~~a~~~v~~~~~ 193 (370)
+-+....++|+++++++..+.||.
T Consensus 178 l~~~~~iiig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 178 LPPWVYIIIGVIAFALRFYLKKKY 201 (206)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677788899999988887764
No 159
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=35.50 E-value=2.7e+02 Score=23.38 Aligned_cols=82 Identities=21% Similarity=0.259 Sum_probs=51.2
Q ss_pred HHHhcccccccccccccceeeehhh-------hhhhhHHHhhhcCCccccccCCCCCcccccCCCCchHHHHHHHHHHHH
Q 017523 109 AFIAGWEKVHNRSLRSIAKILGTIF-------CVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSW 181 (370)
Q Consensus 109 a~~~~~E~~~~~~~~~~~~~~g~~l-------~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~ 181 (370)
-....|..++.. +.+|+.+ ++.|+.++... .+.+...-...++.+++
T Consensus 89 Em~v~KtsP~LY------r~LGIfLPLITTNCaVLgvaLln~~--------------------~~~~f~qsv~~gf~a~l 142 (193)
T COG4657 89 EMVVRKTSPTLY------RLLGIFLPLITTNCAVLGVALLNIN--------------------EGHNFLQSVVYGFGAAL 142 (193)
T ss_pred HHHHHccCHHHH------HHHHHhhhhHhhchHHHHHHHHHhh--------------------hhhhHHHHHHHHhhhHh
Confidence 344556666666 6666654 45688777533 23356677788999999
Q ss_pred HHHHHHHHHHHhhc-----cCCchhHHHHHHHHHHHHHHH
Q 017523 182 FWSFWMILQVPISS-----SIPNHSYSSAWMCFLASLESA 216 (370)
Q Consensus 182 ~~a~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~ 216 (370)
+|++..++-..+.+ +.|.|..-..+....+++...
T Consensus 143 GfslvmvlfA~iRER~~~advP~~frG~~ialitagLmSl 182 (193)
T COG4657 143 GFSLVMVLFAAIRERLALADVPAPFRGAAIALITAGLMSL 182 (193)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHH
Confidence 99999888655443 345555555555555555443
No 160
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=34.49 E-value=56 Score=25.31 Aligned_cols=21 Identities=5% Similarity=0.420 Sum_probs=10.9
Q ss_pred hHhHHHHHH-Hhhhhheeccch
Q 017523 293 SLIGAFAVI-IGLYVVLWGKAE 313 (370)
Q Consensus 293 ~~~G~~lI~-~g~~l~~~~~~~ 313 (370)
.++|.+|++ +++-+..|+.++
T Consensus 5 ~il~llLll~l~asl~~wr~~~ 26 (107)
T PF15330_consen 5 GILALLLLLSLAASLLAWRMKQ 26 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 455666544 455555564443
No 161
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=34.47 E-value=34 Score=21.37 Aligned_cols=19 Identities=16% Similarity=0.822 Sum_probs=11.1
Q ss_pred hHHHHHHHhhhhheeccch
Q 017523 295 IGAFAVIIGLYVVLWGKAE 313 (370)
Q Consensus 295 ~G~~lI~~g~~l~~~~~~~ 313 (370)
+|.++++.+++++.|.+++
T Consensus 21 V~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred hHHHHHHHHHHhheEEecc
Confidence 3555566666777665543
No 162
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=34.38 E-value=1.9e+02 Score=23.91 Aligned_cols=29 Identities=10% Similarity=0.028 Sum_probs=16.6
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHhhccc
Q 017523 60 GLRTFGWLFVASLIGVTANQNAYFEGLYL 88 (370)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~ 88 (370)
+.|++..++++.++...+.++--+...+-
T Consensus 45 KyRDL~II~~L~ll~l~giq~~~y~~~~~ 73 (149)
T PF11694_consen 45 KYRDLSIIALLLLLLLIGIQYSDYQQNQN 73 (149)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44777777666666545555555544443
No 163
>TIGR00893 2A0114 d-galactonate transporter.
Probab=33.70 E-value=3.8e+02 Score=24.60 Aligned_cols=9 Identities=22% Similarity=0.073 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 017523 273 CTVIVTVLA 281 (370)
Q Consensus 273 ~pv~a~~~~ 281 (370)
..+++..++
T Consensus 130 g~~~~~~~~ 138 (399)
T TIGR00893 130 GGIIGGPLV 138 (399)
T ss_pred HHHHHHHHH
Confidence 333333333
No 164
>PRK10489 enterobactin exporter EntS; Provisional
Probab=33.65 E-value=4.3e+02 Score=25.19 Aligned_cols=19 Identities=32% Similarity=0.261 Sum_probs=9.7
Q ss_pred hHhHHHHHHHhhhhheecc
Q 017523 293 SLIGAFAVIIGLYVVLWGK 311 (370)
Q Consensus 293 ~~~G~~lI~~g~~l~~~~~ 311 (370)
.+.|++..+++++.....+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~ 400 (417)
T PRK10489 382 SASGFGLLIIGVLLLLVLG 400 (417)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3455555555655554433
No 165
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=32.96 E-value=51 Score=27.23 Aligned_cols=13 Identities=23% Similarity=0.212 Sum_probs=5.9
Q ss_pred hHHHHHHHhhhhh
Q 017523 295 IGAFAVIIGLYVV 307 (370)
Q Consensus 295 ~G~~lI~~g~~l~ 307 (370)
+|..++++.++++
T Consensus 58 VGg~ill~il~lv 70 (154)
T PF04478_consen 58 VGGPILLGILALV 70 (154)
T ss_pred ccHHHHHHHHHhh
Confidence 3445554444443
No 166
>PF15345 TMEM51: Transmembrane protein 51
Probab=32.93 E-value=30 Score=30.62 Aligned_cols=22 Identities=9% Similarity=0.241 Sum_probs=15.2
Q ss_pred hHHHHHHHhhhhheeccchhhH
Q 017523 295 IGAFAVIIGLYVVLWGKAEDLE 316 (370)
Q Consensus 295 ~G~~lI~~g~~l~~~~~~~~~~ 316 (370)
.|++|.++.+++-++.|+|+.+
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq 88 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQ 88 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777888888877765543
No 167
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=32.31 E-value=3.1e+02 Score=23.21 Aligned_cols=25 Identities=16% Similarity=0.100 Sum_probs=13.5
Q ss_pred HHHHhhhhHHHHHH-HHHHHhccccc
Q 017523 93 VASAMTNLMPAVTF-VMAFIAGWEKV 117 (370)
Q Consensus 93 ~a~~i~~~~P~~~~-lla~~~~~E~~ 117 (370)
......+..|+... ++...+.++|.
T Consensus 59 ~~~~~~~~~P~a~~~~l~~~l~~~~~ 84 (194)
T PF07698_consen 59 DISYFPYLIPVAAAAMLLTILIDPRL 84 (194)
T ss_pred cchhhhhhhHHHHHHHHHHHHhcchH
Confidence 34455566666533 44455666666
No 168
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=32.02 E-value=4e+02 Score=24.38 Aligned_cols=17 Identities=6% Similarity=-0.009 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhhccC
Q 017523 181 WFWSFWMILQVPISSSI 197 (370)
Q Consensus 181 ~~~a~~~v~~~~~~~~~ 197 (370)
+.+.+..+...++.+|+
T Consensus 41 ~~~~~~~~~~g~l~dr~ 57 (379)
T TIGR00881 41 IAYGISKFVMGSVSDRS 57 (379)
T ss_pred HHHHhhhhhhhHHHHhh
Confidence 33334444444444443
No 169
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=30.43 E-value=4.8e+02 Score=24.75 Aligned_cols=15 Identities=20% Similarity=0.339 Sum_probs=8.3
Q ss_pred hHhHHHHHHHhhhhh
Q 017523 293 SLIGAFAVIIGLYVV 307 (370)
Q Consensus 293 ~~~G~~lI~~g~~l~ 307 (370)
..+++++.+.++++.
T Consensus 372 f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 372 YLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555665544
No 170
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=30.38 E-value=2.2e+02 Score=22.00 Aligned_cols=59 Identities=7% Similarity=-0.103 Sum_probs=34.6
Q ss_pred hHHHHHHHhhc-----cccchhHHHHhhh-hHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHH
Q 017523 76 TANQNAYFEGL-----YLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAIT 140 (370)
Q Consensus 76 ~~~~~~~~~al-----~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l 140 (370)
++.-+++..-. +.-+++.--+++- .+-.....++.++++|++++. .+.|-.+.+.++.+
T Consensus 41 AffEY~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n------~l~af~~i~~av~f 105 (108)
T PF04342_consen 41 AFFEYCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWN------YLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHH------HHHHHHHHHHhhhe
Confidence 44445544332 3334444444443 233334567888999999999 88877666555544
No 171
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=29.82 E-value=3.6e+02 Score=23.10 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=22.7
Q ss_pred HHHHHHHhcccchhhhHhHHHHHH--Hhhhhhee
Q 017523 278 TVLAGLFLDEEIFMGSLIGAFAVI--IGLYVVLW 309 (370)
Q Consensus 278 ~~~~~~~~~e~~~~~~~~G~~lI~--~g~~l~~~ 309 (370)
-.+|..++.|..-+-++.|..|.+ +|......
T Consensus 132 ~~iG~~Lyt~Y~l~fe~~s~lLLvAmIGAIvLa~ 165 (186)
T MTH00057 132 EVLGRVLYTDYYYLFILASFILLVAMIGAIVLTH 165 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446888888888888888888866 44444444
No 172
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=29.71 E-value=3.7e+02 Score=23.18 Aligned_cols=25 Identities=8% Similarity=0.133 Sum_probs=12.5
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHhccC
Q 017523 238 ACCLYSGI-ALAISFFLQAWCISERG 262 (370)
Q Consensus 238 ~~~l~~gi-~~~~~~~~~~~~l~~~~ 262 (370)
..++..|+ +++..|.+|.++.+..+
T Consensus 128 Itlll~a~vgGfamy~my~y~yr~~a 153 (226)
T COG4858 128 ITLLLTAVVGGFAMYIMYYYAYRMRA 153 (226)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 33344444 55555555555555544
No 173
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=28.53 E-value=4.6e+02 Score=23.98 Aligned_cols=49 Identities=20% Similarity=0.162 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-cCCchhHHHHHHHHHHHHHHHHHHH
Q 017523 171 LGCFLLFGSSWFWSFWMILQVPISS-SIPNHSYSSAWMCFLASLESATVAL 220 (370)
Q Consensus 171 ~G~~l~l~aa~~~a~~~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~ 220 (370)
.+.+..++.++....--.+.++..+ +. ++..+....++.+++++..-.+
T Consensus 6 ~~~~~i~~~s~lg~~~P~~~~~~~~~~~-~~~~l~~~~~fa~GvlL~~a~~ 55 (317)
T PF02535_consen 6 VAILAIFIVSLLGGLLPLLIRKFSKNRL-NKRILSLLNAFAAGVLLGTAFL 55 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc-chHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555655544 44 3555556666666655544333
No 174
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=28.46 E-value=5.6e+02 Score=24.92 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchh
Q 017523 271 PLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAED 314 (370)
Q Consensus 271 ~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~ 314 (370)
..-+.++.++..+.+.. .....++..+.+.++....|.+|++
T Consensus 387 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (435)
T PRK10435 387 LICSVLGCVFCFIALMG--ASSFELAGTFIVSLIILMFYARKMH 428 (435)
T ss_pred HHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555554444431 1233455555555555555544433
No 175
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=28.39 E-value=2.9e+02 Score=22.62 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=34.6
Q ss_pred HHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheecc
Q 017523 252 FLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGK 311 (370)
Q Consensus 252 ~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~ 311 (370)
....+-+++.+..+.++-..+ -..-+++.+--..++.++.|..++..=+..+...+
T Consensus 63 G~~~~lm~~kgi~rm~lG~~v----m~~~~~llw~ggv~~~~IAg~~lv~filmvVLiPE 118 (144)
T PF01350_consen 63 GVFWFLMRRKGIGRMSLGMLV----MAVAGYLLWMGGVPPGQIAGVLLVFFILMVVLIPE 118 (144)
T ss_pred HHHHhhhcCCCcchhhHHHHH----HHHHHHHHHhcCCcHHHhHHHHHHHHHHHHhcccC
Confidence 334455677777777655432 22334444455677788888888887766666543
No 176
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=28.19 E-value=38 Score=31.39 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhc------ccccc----cc-cchHHHHHHHHHH
Q 017523 3 MVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTR------KSSYR----LS-LGLRTFGWLFVAS 71 (370)
Q Consensus 3 ~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~------~~~~~----~~-~~~~~~~~~~~~g 71 (370)
|+++.+|||.-....|++.+.|- ..+...+-+.++.++...+..+... ...|. +. -++..+...++.|
T Consensus 1 M~itmlcwGSW~nt~kL~~r~gR-~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAERRGR-LPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG 79 (336)
T ss_pred CeeehhhhcChHHHHHHHHhcCC-ccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence 57789999999999999987742 2233444555554444333322211 01111 11 1123355556666
Q ss_pred HHHHhHHHHHHHhhccccchhHHHHhhh
Q 017523 72 LIGVTANQNAYFEGLYLSSSTVASAMTN 99 (370)
Q Consensus 72 ~~~~~~~~~~~~~al~~~~~~~a~~i~~ 99 (370)
++. .+.+++..+|+.+...+.+-.+..
T Consensus 80 vvf-nlgNillq~aia~aGmSVafpvg~ 106 (336)
T PF07168_consen 80 VVF-NLGNILLQAAIAFAGMSVAFPVGI 106 (336)
T ss_pred Hhh-hhHHHHHHHHHHHhcceeeeeeec
Confidence 665 777788888888877776665554
No 177
>PTZ00359 hypothetical protein; Provisional
Probab=27.57 E-value=5.8e+02 Score=24.84 Aligned_cols=48 Identities=8% Similarity=0.014 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-ccCCchhHHHHHHHHHHHHHHHHHHH
Q 017523 172 GCFLLFGSSWFWSFWMILQVPIS-SSIPNHSYSSAWMCFLASLESATVAL 220 (370)
Q Consensus 172 G~~l~l~aa~~~a~~~v~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~ 220 (370)
-.-..+.-+++.+.|++=.=-.. .+. |..-+.......|.++...++.
T Consensus 228 ~lNYvllIaL~iSAYQVNmCC~pft~~-D~vFL~L~G~~vGiLItV~ls~ 276 (443)
T PTZ00359 228 ALNYIFVIGLCISAYQVNLCCMSFTKC-DGVFIFLTGTVVGILITVCLSM 276 (443)
T ss_pred hHHHHHHHHHHHhhheeeEEEeeccch-hhhHHHHhhhHHHHHHHHHhhh
Confidence 33456667778888876322111 122 3443444444445555444444
No 178
>PF02537 CRCB: CrcB-like protein; InterPro: IPR003691 Three genes, crcA, cspE and crcB when present in high copy confer camphor resistance on a cell and suppress mutations in the chromosomal partition gene mukB in Escherichia coli. The cspE gene has been previously identified as a cold shock-like protein with homologues in all organisms tested []. Camphor and mukB mutations may interfere with chromosome condensation and high copy crcA, cspE and crcB have been implicated as promoting or protecting chromosome folding [].; GO: 0016020 membrane
Probab=27.46 E-value=2.9e+02 Score=21.31 Aligned_cols=48 Identities=10% Similarity=0.017 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHh
Q 017523 175 LLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLV 222 (370)
Q Consensus 175 l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 222 (370)
.++.+++.-..-..+.+...++.++....++..+..++.+...+....
T Consensus 4 v~lgg~~Ga~~R~~l~~~~~~~~~~~p~gt~~vN~~g~fllG~~~~~~ 51 (117)
T PF02537_consen 4 VALGGALGALLRYGLSKLLNRRWGWFPWGTLLVNVLGCFLLGLLAGLL 51 (117)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444332234456778888888776665543
No 179
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=27.31 E-value=99 Score=27.01 Aligned_cols=45 Identities=22% Similarity=0.414 Sum_probs=26.8
Q ss_pred eeeecchhhHHHHHHHHHHHHhcccch-hhhHhHHH-HHHHhhhhhe
Q 017523 264 LFCAMFNPLCTVIVTVLAGLFLDEEIF-MGSLIGAF-AVIIGLYVVL 308 (370)
Q Consensus 264 ~~~s~~~~l~pv~a~~~~~~~~~e~~~-~~~~~G~~-lI~~g~~l~~ 308 (370)
..++.+..+-|..+..++..+-+--.. ..+|+|++ ++..|+++..
T Consensus 34 l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 34 LIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 445555566677777777655443223 34566554 4668988875
No 180
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=27.08 E-value=1.2e+02 Score=18.41 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017523 170 LLGCFLLFGSSWFWSFWMILQVP 192 (370)
Q Consensus 170 ~~G~~l~l~aa~~~a~~~v~~~~ 192 (370)
.+=.++-++.+.+||+|++..-.
T Consensus 5 lliVl~Pil~A~~Wa~fNIg~~A 27 (36)
T CHL00196 5 LLVIAAPVLAAASWALFNIGRLA 27 (36)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 44456778999999999997643
No 181
>COG5202 Predicted membrane protein [Function unknown]
Probab=26.88 E-value=5.7e+02 Score=24.49 Aligned_cols=165 Identities=13% Similarity=0.108 Sum_probs=82.5
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhccccchhHH
Q 017523 15 LFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVA 94 (370)
Q Consensus 15 ~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a 94 (370)
++.+.....|+++.++ |++++.+.-.|+.-+.+|.+... +.|..+. .. -..+|..+...+- ..
T Consensus 8 ~~~~i~~~~gv~~~~l---r~l~clL~t~pf~~ilkR~p~~~---~~~nlfs---is------l~lfylfgv~hl~--~g 70 (512)
T COG5202 8 VLTMIKKLSGVNYLEL---RFLACLLLTLPFVSILKRNPTRI---RTHNLFS---IS------LILFYLFGVRHLV--SG 70 (512)
T ss_pred HHHHHHHHcCCCHHHH---HHHHHHHHhhhHHHHHhhCcccc---chhhHHH---HH------HHHHHHHhhHhhh--hh
Confidence 3445555567898875 77777777778877766543211 1111111 11 1123333443332 23
Q ss_pred HHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCCchHHHHH
Q 017523 95 SAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCF 174 (370)
Q Consensus 95 ~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 174 (370)
..+.....++|.+++.+.......+. ..+.+.|-..+... .+.+.. +...+-++.|.-
T Consensus 71 ~~iL~~~slfTyl~~~fyrS~~Mp~v----------~fivilgh~~i~h~-~q~~~e-----------~~~ts~DIt~sq 128 (512)
T COG5202 71 AYILASISLFTYLLRYFYRSAYMPTV----------LFIVILGHYKIFHA-AQLFEE-----------RISTSFDITGSQ 128 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHH----------HHHHHHHHHHHHHH-HHHhhh-----------hccCcccchHHH
Confidence 34455677888888887665555333 24444555443211 000000 011222344443
Q ss_pred ---HHHHHHHHHHHHHH---------HHH-HhhccCCchhHHHHHHHHHHHHHHHHH
Q 017523 175 ---LLFGSSWFWSFWMI---------LQV-PISSSIPNHSYSSAWMCFLASLESATV 218 (370)
Q Consensus 175 ---l~l~aa~~~a~~~v---------~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~ 218 (370)
.+=+.+++|+.|.- -|| +..++.|+......+.+++.+++..|-
T Consensus 129 Mvl~mKltsfaws~YdG~~~ssdlt~~qk~ra~r~~p~vl~fL~YifF~p~Ll~GPa 185 (512)
T COG5202 129 MVLTMKLTSFAWSYYDGKEYSSDLTEHQKSRARRGTPTVLDFLSYIFFIPGLLLGPA 185 (512)
T ss_pred HHHHHHHHHhHHHhhcCCCccchhhhhhhhhhhcCCCcHHHHHHHHHHhhhhhcCCC
Confidence 34456777777632 122 123445556777778888777766553
No 182
>PRK09776 putative diguanylate cyclase; Provisional
Probab=26.85 E-value=8.8e+02 Score=26.69 Aligned_cols=12 Identities=8% Similarity=-0.009 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHh
Q 017523 101 MPAVTFVMAFIA 112 (370)
Q Consensus 101 ~P~~~~lla~~~ 112 (370)
.|.-.+.++.++
T Consensus 28 W~~~g~~~~~ll 39 (1092)
T PRK09776 28 WFPTAIMMVAFY 39 (1092)
T ss_pred cccHHHHHHHHH
Confidence 444444444444
No 183
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=26.75 E-value=68 Score=26.25 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=31.1
Q ss_pred hccccchhHHHHhhhhHHHHHHHHHHHh-----cccccccccccccceeeehhhhhhhhHHHh
Q 017523 85 GLYLSSSTVASAMTNLMPAVTFVMAFIA-----GWEKVHNRSLRSIAKILGTIFCVGGAITMA 142 (370)
Q Consensus 85 al~~~~~~~a~~i~~~~P~~~~lla~~~-----~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 142 (370)
++.--+.-.++.+.|+.|+++++++.++ +.|.+ ..++.+++.++.+++.
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~---------~~~~~~lg~~l~fl~~ 121 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELI---------VIFGAFLGLALGFLLA 121 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---------HHHHHHHHHHHHHHHH
Confidence 3444455667888999999988877655 44544 4555555555555544
No 184
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=26.74 E-value=5.6e+02 Score=24.34 Aligned_cols=28 Identities=11% Similarity=0.130 Sum_probs=18.2
Q ss_pred cchhhhHhHHHHHHHhhhhheeccchhh
Q 017523 288 EIFMGSLIGAFAVIIGLYVVLWGKAEDL 315 (370)
Q Consensus 288 ~~~~~~~~G~~lI~~g~~l~~~~~~~~~ 315 (370)
......+.+.++++...+...|++++++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK11195 358 VPVVAVIVGFGLLVALAMALLWRWHRRN 385 (393)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344456677888777777788765544
No 185
>PRK10649 hypothetical protein; Provisional
Probab=26.55 E-value=6.7e+02 Score=25.74 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=10.7
Q ss_pred HHHHHHH--HHHHHHHHHHHH
Q 017523 30 FVVYRQG--TAALIMAPIVYI 48 (370)
Q Consensus 30 ~~~~R~~--~~~l~l~~~~~~ 48 (370)
+..+|.. ++++.+.|+.++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~l~ 63 (577)
T PRK10649 43 TNGFRDALLFSSLWLIPVFLF 63 (577)
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 3556644 455555666655
No 186
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=26.23 E-value=6e+02 Score=24.96 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=7.6
Q ss_pred HhHHHHHHHhhhhhe
Q 017523 294 LIGAFAVIIGLYVVL 308 (370)
Q Consensus 294 ~~G~~lI~~g~~l~~ 308 (370)
+.|+++++.++....
T Consensus 417 ~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 417 LMGVMIIACTLPVAF 431 (476)
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555555544443
No 187
>PRK15049 L-asparagine permease; Provisional
Probab=25.88 E-value=4.8e+02 Score=26.06 Aligned_cols=9 Identities=11% Similarity=0.342 Sum_probs=3.8
Q ss_pred hhhHHHHHH
Q 017523 270 NPLCTVIVT 278 (370)
Q Consensus 270 ~~l~pv~a~ 278 (370)
....+.++.
T Consensus 422 ~p~~~~~~l 430 (499)
T PRK15049 422 APFTSWLTL 430 (499)
T ss_pred ccHHHHHHH
Confidence 344444443
No 188
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only]
Probab=25.73 E-value=3.5e+02 Score=26.08 Aligned_cols=13 Identities=8% Similarity=-0.005 Sum_probs=8.2
Q ss_pred HHHHHHHhccccc
Q 017523 105 TFVMAFIAGWEKV 117 (370)
Q Consensus 105 ~~lla~~~~~E~~ 117 (370)
..++..+|.+-|.
T Consensus 7 ~ivLl~if~GaR~ 19 (436)
T COG2704 7 IIVLLALFLGARL 19 (436)
T ss_pred HHHHHHHHHhhcc
Confidence 4455666777766
No 189
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=24.72 E-value=91 Score=18.06 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=9.2
Q ss_pred hhhhHhHHHHHHHhhhhh
Q 017523 290 FMGSLIGAFAVIIGLYVV 307 (370)
Q Consensus 290 ~~~~~~G~~lI~~g~~l~ 307 (370)
....++|.+++..+.++.
T Consensus 11 ~~~~~~G~~l~~~~~~~~ 28 (34)
T TIGR01167 11 SLLLLLGLLLLGLGGLLL 28 (34)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445566774544443333
No 190
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=24.36 E-value=3.4e+02 Score=27.57 Aligned_cols=49 Identities=6% Similarity=0.027 Sum_probs=24.5
Q ss_pred cCceeeecchhhHHHHHHHHHHHHh--------------cccchhhhH-hHHHHHHHhhhhhee
Q 017523 261 RGPLFCAMFNPLCTVIVTVLAGLFL--------------DEEIFMGSL-IGAFAVIIGLYVVLW 309 (370)
Q Consensus 261 ~~~~~~s~~~~l~pv~a~~~~~~~~--------------~e~~~~~~~-~G~~lI~~g~~l~~~ 309 (370)
..+....+--...|+-.+.+.|..| ++.+.+.-+ .|+..+.+-++...+
T Consensus 446 f~~gp~~lGk~s~p~~~i~v~w~lf~~vil~fP~~~pvT~~~MNya~VV~gg~~lf~li~~~~~ 509 (550)
T KOG1289|consen 446 FRPGPFNLGKFSKPIGIIAVLWVLFMIVILCFPSVYPVTADNMNYACVVYGGVMLFCLIYYFVS 509 (550)
T ss_pred cCCCCccccccccchHHHHHHHHHHHHHHHhCCcccCCCcccCceEEEeehhhhhhhhheeeee
Confidence 4555555555555555544554443 345555544 444444444444444
No 191
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=23.28 E-value=8.8e+02 Score=25.44 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=10.6
Q ss_pred HhhhhHHHHHHH-HHHHhccccc
Q 017523 96 AMTNLMPAVTFV-MAFIAGWEKV 117 (370)
Q Consensus 96 ~i~~~~P~~~~l-la~~~~~E~~ 117 (370)
.+.++.|.+... +...+..+|+
T Consensus 333 ~~~~l~p~a~~~~l~~~lv~~r~ 355 (700)
T COG1480 333 ASGLLVPPALGPMLLILLVFLRI 355 (700)
T ss_pred hhhhccchHHHHHHHHHHHHhhH
Confidence 334444444433 3345556666
No 192
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=22.83 E-value=1.1e+02 Score=18.99 Aligned_cols=34 Identities=15% Similarity=0.345 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhh
Q 017523 274 TVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVV 307 (370)
Q Consensus 274 pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~ 307 (370)
|+.+.+.|.+++=-+=-...++|.-+|+.|+.-.
T Consensus 1 pi~aliaGiLiLi~PrllnyiVaiyLI~~G~lgL 34 (39)
T PF11295_consen 1 PILALIAGILILIMPRLLNYIVAIYLIVIGLLGL 34 (39)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666665554555778888888887643
No 193
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=21.72 E-value=1.9e+02 Score=17.61 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017523 170 LLGCFLLFGSSWFWSFWMILQVP 192 (370)
Q Consensus 170 ~~G~~l~l~aa~~~a~~~v~~~~ 192 (370)
.+=.++-++.+.+|++|++..-.
T Consensus 5 ~liVl~Pil~A~gWa~fNIg~~A 27 (36)
T PF06298_consen 5 LLIVLLPILPAAGWALFNIGRAA 27 (36)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHH
Confidence 34456778889999999997654
No 194
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=21.55 E-value=4.2e+02 Score=25.16 Aligned_cols=19 Identities=11% Similarity=0.001 Sum_probs=10.6
Q ss_pred hhhHhHHHHHHHhhhhhee
Q 017523 291 MGSLIGAFAVIIGLYVVLW 309 (370)
Q Consensus 291 ~~~~~G~~lI~~g~~l~~~ 309 (370)
+..++..+++++.+.....
T Consensus 288 ~~~ii~g~lll~vl~~~~~ 306 (344)
T PRK15432 288 WNDFIAGLVLLGVLVFDGR 306 (344)
T ss_pred HHHHHHHHHhhhhhhHHHH
Confidence 4456666666655555433
No 195
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=21.37 E-value=7e+02 Score=23.57 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 017523 169 WLLGCFLLFGSSWFWSF 185 (370)
Q Consensus 169 ~~~G~~l~l~aa~~~a~ 185 (370)
...|..+.-.+...|.+
T Consensus 82 ~~l~~~l~~~a~~~~~~ 98 (340)
T PF12794_consen 82 VALGAALLAMALFWLVF 98 (340)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566555555443333
No 196
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=20.93 E-value=49 Score=26.61 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=11.7
Q ss_pred eeecchhhHHHHHHHHHHH
Q 017523 265 FCAMFNPLCTVIVTVLAGL 283 (370)
Q Consensus 265 ~~s~~~~l~pv~a~~~~~~ 283 (370)
..+.+.|+-|+++.+++.+
T Consensus 69 ~aa~l~Y~lPll~li~g~~ 87 (135)
T PF04246_consen 69 KAAFLVYLLPLLALIAGAV 87 (135)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666667777666554
No 197
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=20.89 E-value=8.1e+02 Score=24.11 Aligned_cols=114 Identities=14% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHH-HHHHHHHHHHHH---HhccC--ce
Q 017523 191 VPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGI-ALAISFFLQAWC---ISERG--PL 264 (370)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi-~~~~~~~~~~~~---l~~~~--~~ 264 (370)
+|..++. .|..........+.+....... ....+..+.-.+. ...+.|.+-..+ +++.+ +.
T Consensus 323 ~~v~~~~-tP~~Ai~~~~~i~~~~~~~~~~------------~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~~~ 389 (473)
T TIGR00905 323 GRVNKNG-APSVALLLTNILIQLFLLLTLL------------TSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTYPK 389 (473)
T ss_pred HhhCccC-CCHHHHHHHHHHHHHHHHHHHc------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q ss_pred eeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchhhHH
Q 017523 265 FCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAEDLEE 317 (370)
Q Consensus 265 ~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~~~~ 317 (370)
.-......-++++.++..+..-..-......|.++++.|+.++.+.+++++++
T Consensus 390 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 442 (473)
T TIGR00905 390 IKNRKALIVGVIACVYSIWLLYAAGLKYLLLGFILYAPGIIFYGRARKERGKH 442 (473)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
No 198
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=20.81 E-value=2.5e+02 Score=28.76 Aligned_cols=9 Identities=11% Similarity=-0.230 Sum_probs=4.9
Q ss_pred HHHHHHHHH
Q 017523 177 FGSSWFWSF 185 (370)
Q Consensus 177 l~aa~~~a~ 185 (370)
..+++|++.
T Consensus 410 v~~a~~~~g 418 (618)
T KOG3762|consen 410 VVSALCHAG 418 (618)
T ss_pred ehhhhhccc
Confidence 555555554
No 199
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=20.75 E-value=6.6e+02 Score=23.05 Aligned_cols=28 Identities=11% Similarity=0.129 Sum_probs=19.1
Q ss_pred hCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 017523 22 VQGLSPRVFVVYRQGTAALIMAPIVYIS 49 (370)
Q Consensus 22 ~~g~~p~~~~~~R~~~~~l~l~~~~~~~ 49 (370)
++|.+|..-..|-..+...+.....+.+
T Consensus 17 ~~GYn~Vnt~~YaiiL~~~v~~v~~ll~ 44 (273)
T PF01889_consen 17 GPGYNPVNTLTYAIILGVAVIGVYKLLK 44 (273)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578898888887777666555554443
No 200
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=20.44 E-value=4.2e+02 Score=21.95 Aligned_cols=61 Identities=23% Similarity=0.209 Sum_probs=30.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhccc------ccc----cccchHHHHHHHHHHHHHHhHHHHHHHhhcc
Q 017523 25 LSPRVFVVYRQGTAALIMAPIVYISTRKS------SYR----LSLGLRTFGWLFVASLIGVTANQNAYFEGLY 87 (370)
Q Consensus 25 ~~p~~~~~~R~~~~~l~l~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~ 87 (370)
++|.|+.+.-.+.-.+..+.+ -.++.. .|+ --.+++.+..++..|+.........|+..+.
T Consensus 4 l~~~qiL~inli~d~~~a~al--~~e~~~~~im~r~Pr~~~~~l~~~~~~~~i~~~g~~~~~~~~~~f~~~~~ 74 (182)
T PF00689_consen 4 LTPIQILWINLITDLLPALAL--GFEPPDPDIMKRPPRDPNEPLINKRLLRRILIQGLIMAAACFFAFFLGLY 74 (182)
T ss_dssp S-HHHHHHHHHTTTHHHHHHG--GGSS-STTGGGS---TTTS-SSSHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH--hcCcchhhhhhccccccchhhccHHhHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 567777777665544433332 222211 111 0112344777777777776666666666665
No 201
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=20.14 E-value=1e+02 Score=26.95 Aligned_cols=24 Identities=0% Similarity=-0.015 Sum_probs=16.7
Q ss_pred ccchhhhHhHHHHHHHhhhhheec
Q 017523 287 EEIFMGSLIGAFAVIIGLYVVLWG 310 (370)
Q Consensus 287 e~~~~~~~~G~~lI~~g~~l~~~~ 310 (370)
|+--..+-+|++.--+++|..+++
T Consensus 196 ~ra~lA~~lgmteSqvkVWFQNRR 219 (288)
T KOG0847|consen 196 DRAQLAQELNMTESQVKVWFQNRR 219 (288)
T ss_pred hHHHhhccccccHHHHHHHHhcch
Confidence 334444567888888999988653
No 202
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=20.10 E-value=8.4e+02 Score=23.98 Aligned_cols=34 Identities=15% Similarity=0.020 Sum_probs=17.4
Q ss_pred HHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcC
Q 017523 105 TFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKG 146 (370)
Q Consensus 105 ~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~ 146 (370)
..++++++.+-|.. .+.--+.+-+|+.++++.-+
T Consensus 7 ~~~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~~ 40 (433)
T PRK09412 7 IIVLLAIFLGARLG--------GIGIGFAGGLGVLILTFIFG 40 (433)
T ss_pred HHHHHHHHHhHhhh--------HHHHHHHHHHHHHHHHHhcC
Confidence 44556666666552 12222445556666665533
No 203
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=20.04 E-value=5.3e+02 Score=21.62 Aligned_cols=60 Identities=8% Similarity=0.031 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcc-cchhhhHhHHHHHHHhhhhh
Q 017523 248 AISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDE-EIFMGSLIGAFAVIIGLYVV 307 (370)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e-~~~~~~~~G~~lI~~g~~l~ 307 (370)
.-+|..|...-....+.....+..++-+.......+++++ ++....+.+..+-++.+++.
T Consensus 62 iSa~lvW~~~~~~~~~~~~~~ly~~ql~ln~awspiff~l~~l~~a~i~~lll~~~vl~l~ 122 (161)
T COG3476 62 ISAYLVWEKGPGQGTSWLLMFLYLLQLILNFAWSPIFFGLRSLGAALIIILLLWIAVLVLT 122 (161)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Confidence 3455555555444443333444448999999999999997 68888777776655544443
Done!