Query 017523
Match_columns 370
No_of_seqs 174 out of 2031
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 15:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.0 1.8E-10 6.1E-15 92.8 5.5 69 243-311 35-105 (137)
2 3b5d_A Multidrug transporter E 98.7 2E-07 6.9E-12 72.2 11.0 68 243-310 35-104 (110)
3 2i68_A Protein EMRE; transmemb 98.4 4.9E-07 1.7E-11 72.6 6.6 70 69-144 34-104 (137)
4 3b5d_A Multidrug transporter E 98.3 2.2E-06 7.5E-11 66.3 9.1 69 69-143 34-103 (110)
5 3rko_J NADH-quinone oxidoreduc 74.5 24 0.00081 29.1 9.6 32 278-309 127-160 (184)
6 1pw4_A Glycerol-3-phosphate tr 42.0 2E+02 0.0067 26.0 23.2 36 3-39 95-131 (451)
7 3l1l_A Arginine/agmatine antip 29.6 1.7E+02 0.0059 26.8 8.4 42 270-312 387-429 (445)
8 4djk_A Probable glutamate/gamm 29.0 2E+02 0.0069 27.0 8.9 18 294-311 449-466 (511)
9 2zxe_G FXYD10, phospholemman-l 23.4 42 0.0014 22.9 1.9 22 293-314 24-45 (74)
10 2jo1_A Phospholemman; FXYD1, N 22.7 41 0.0014 22.7 1.7 21 293-313 21-41 (72)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.04 E-value=1.8e-10 Score=92.77 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=52.6
Q ss_pred HHH-HHHHHHHHHHHHHhccCceeeecc-hhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheecc
Q 017523 243 SGI-ALAISFFLQAWCISERGPLFCAMF-NPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGK 311 (370)
Q Consensus 243 ~gi-~~~~~~~~~~~~l~~~~~~~~s~~-~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~ 311 (370)
.++ +++++|++|.+++++.+++++..+ ..+.|++++++++++|||++++.+++|.++|++|+++....+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 444 788999999999999999999998 899999999999999999999999999999999999987543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.67 E-value=2e-07 Score=72.23 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=62.7
Q ss_pred HHH-HHHHHHHHHHHHHhccCceeeecc-hhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheec
Q 017523 243 SGI-ALAISFFLQAWCISERGPLFCAMF-NPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWG 310 (370)
Q Consensus 243 ~gi-~~~~~~~~~~~~l~~~~~~~~s~~-~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~ 310 (370)
.++ +.++++.++.+++|+.+.+.+..+ ..+.|+++.+++++++||+++..+++|.++|+.|+++....
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344 778899999999999999999888 89999999999999999999999999999999999998654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.39 E-value=4.9e-07 Score=72.58 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=53.8
Q ss_pred HHHHHHHhHHHHHHHhhccccchhHHHHh-hhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhh
Q 017523 69 VASLIGVTANQNAYFEGLYLSSSTVASAM-TNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALL 144 (370)
Q Consensus 69 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i-~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~ 144 (370)
+.+++...+.++++..++++.+++.+..+ ..+.|+++.++++++++|++++. +++|+.+.++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence 56666678999999999999999999999 89999999999999999999999 999999999999998654
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.35 E-value=2.2e-06 Score=66.31 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=63.2
Q ss_pred HHHHHHHhHHHHHHHhhccccchhHHHHh-hhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhh
Q 017523 69 VASLIGVTANQNAYFEGLYLSSSTVASAM-TNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMAL 143 (370)
Q Consensus 69 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i-~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 143 (370)
+.+++...+.++++..++++.|.+.+..+ ..+.|+++.++++++++|++++. |++|+.+.++|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 45666668899999999999999999999 78999999999999999999999 99999999999999854
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=74.54 E-value=24 Score=29.10 Aligned_cols=32 Identities=6% Similarity=0.031 Sum_probs=23.9
Q ss_pred HHHHHHHhcccchhhhHhHHHHHH--Hhhhhhee
Q 017523 278 TVLAGLFLDEEIFMGSLIGAFAVI--IGLYVVLW 309 (370)
Q Consensus 278 ~~~~~~~~~e~~~~~~~~G~~lI~--~g~~l~~~ 309 (370)
-.+|..++++.+-+-++.+..|.+ +|.....+
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLar 160 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR 160 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888999999999999988865 45444443
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=41.99 E-value=2e+02 Score=25.99 Aligned_cols=36 Identities=25% Similarity=0.031 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHh-CCCCchhHHHHHHHHHH
Q 017523 3 MVALQFLYAGVALFTRVALV-QGLSPRVFVVYRQGTAA 39 (370)
Q Consensus 3 ~~~~~~~~g~~~~~~k~~~~-~g~~p~~~~~~R~~~~~ 39 (370)
++.+.++++...++.-.... . -+...+...|.+.+.
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~ 131 (451)
T 1pw4_A 95 LPAGLILAAAVMLFMGFVPWAT-SSIAVMFVLLFLCGW 131 (451)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHH-SSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhcc-ccHHHHHHHHHHHHH
Confidence 34445555555554433100 1 355566677776664
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=29.58 E-value=1.7e+02 Score=26.78 Aligned_cols=42 Identities=5% Similarity=-0.097 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHH-hcccchhhhHhHHHHHHHhhhhheeccc
Q 017523 270 NPLCTVIVTVLAGLF-LDEEIFMGSLIGAFAVIIGLYVVLWGKA 312 (370)
Q Consensus 270 ~~l~pv~a~~~~~~~-~~e~~~~~~~~G~~lI~~g~~l~~~~~~ 312 (370)
...-++++.++..+. +.... ...+.|.++++.|+.++.+.++
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~y~~~~~ 429 (445)
T 3l1l_A 387 YLAVTTIAFLYCIWAVVGSGA-KEVMWSFVTLMVITAMYALNYN 429 (445)
T ss_dssp THHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 334445554443333 32222 2345677888888877765443
No 8
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=28.99 E-value=2e+02 Score=26.97 Aligned_cols=18 Identities=28% Similarity=0.584 Sum_probs=8.9
Q ss_pred HhHHHHHHHhhhhheecc
Q 017523 294 LIGAFAVIIGLYVVLWGK 311 (370)
Q Consensus 294 ~~G~~lI~~g~~l~~~~~ 311 (370)
..+..+++.+++.+.+.+
T Consensus 449 ~~~~~~~~~~i~~~~~~~ 466 (511)
T 4djk_A 449 LVVSFLVVLALPFILYAV 466 (511)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555433
No 9
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=23.43 E-value=42 Score=22.91 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=14.9
Q ss_pred hHhHHHHHHHhhhhheeccchh
Q 017523 293 SLIGAFAVIIGLYVVLWGKAED 314 (370)
Q Consensus 293 ~~~G~~lI~~g~~l~~~~~~~~ 314 (370)
.++++++.++|+.++..+|-|-
T Consensus 24 LifA~vLfi~GI~iilS~kcrC 45 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGKCRC 45 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC---
T ss_pred chhHHHHHHHHHHHHHcCcccc
Confidence 4667788888988888776543
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=22.69 E-value=41 Score=22.73 Aligned_cols=21 Identities=24% Similarity=0.486 Sum_probs=15.3
Q ss_pred hHhHHHHHHHhhhhheeccch
Q 017523 293 SLIGAFAVIIGLYVVLWGKAE 313 (370)
Q Consensus 293 ~~~G~~lI~~g~~l~~~~~~~ 313 (370)
.++++++.++|+.++...|-+
T Consensus 21 LifA~vLfi~GI~iilS~Kck 41 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSRRCR 41 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCccc
Confidence 456777888888888776654
Done!