Query 017523
Match_columns 370
No_of_seqs 174 out of 2031
Neff 9.0
Searched_HMMs 13730
Date Mon Mar 25 15:48:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017523.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017523hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 47.5 74 0.0054 26.5 24.1 18 248-265 359-376 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 38.9 1E+02 0.0073 25.5 11.9 17 181-197 70-86 (447)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 38.0 19 0.0014 17.6 3.0 20 170-189 2-21 (27)
4 d1iwga8 f.35.1.1 (A:513-566,A: 17.5 2E+02 0.015 21.8 9.6 27 276-302 96-122 (222)
5 d1pv7a_ f.38.1.2 (A:) Lactose 10.3 3.6E+02 0.026 20.9 12.1 29 5-33 18-48 (417)
6 d1wpga4 f.33.1.1 (A:1-124,A:24 8.1 5.5E+02 0.04 21.5 13.0 18 24-41 264-281 (472)
7 d1u7ga_ f.44.1.1 (A:) Ammonium 6.3 6.5E+02 0.047 20.7 22.2 22 68-89 199-220 (383)
8 d1iwga7 f.35.1.1 (A:7-37,A:331 5.0 4.4E+02 0.032 19.2 5.1 28 276-303 78-105 (199)
9 d1gl4a1 d.22.1.2 (A:399-631) D 4.4 1.6E+02 0.011 23.1 1.8 37 83-120 42-78 (233)
10 d1fftb2 f.17.2.1 (B:27-117) Cy 2.9 1.5E+02 0.011 19.2 0.2 15 299-313 30-44 (91)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=47.52 E-value=74 Score=26.45 Aligned_cols=18 Identities=0% Similarity=-0.112 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhccCcee
Q 017523 248 AISFFLQAWCISERGPLF 265 (370)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~ 265 (370)
......+....+..+...
T Consensus 359 ~~~~~~~~~~~~~~p~~~ 376 (447)
T d1pw4a_ 359 GPVMLIGLHALELAPKKA 376 (447)
T ss_dssp HHHHHHHHHHHHTSCTTH
T ss_pred HHHHHHHHHHHHHcCHHH
Confidence 333344455555555443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=38.86 E-value=1e+02 Score=25.51 Aligned_cols=17 Identities=12% Similarity=0.127 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhhccC
Q 017523 181 WFWSFWMILQVPISSSI 197 (370)
Q Consensus 181 ~~~a~~~v~~~~~~~~~ 197 (370)
+.+++..+..-++..++
T Consensus 70 ~~~~~~~~~~G~l~Dr~ 86 (447)
T d1pw4a_ 70 IAYGFSKFIMGSVSDRS 86 (447)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 33444444444445455
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=38.00 E-value=19 Score=17.55 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 017523 170 LLGCFLLFGSSWFWSFWMIL 189 (370)
Q Consensus 170 ~~G~~l~l~aa~~~a~~~v~ 189 (370)
.+|.+..-+++++||.|.-.
T Consensus 2 vlgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred eeeehHHHHHHHHHHHHHHh
Confidence 46888888899999988643
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=17.52 E-value=2e+02 Score=21.84 Aligned_cols=27 Identities=22% Similarity=0.091 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcccchhhhHhHHHHHHH
Q 017523 276 IVTVLAGLFLDEEIFMGSLIGAFAVII 302 (370)
Q Consensus 276 ~a~~~~~~~~~e~~~~~~~~G~~lI~~ 302 (370)
.+.+++..+.+.+++....+|.++.+.
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhh
Confidence 345566678888999888887777553
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=10.27 E-value=3.6e+02 Score=20.90 Aligned_cols=29 Identities=10% Similarity=-0.015 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHH-HHh-CCCCchhHHHH
Q 017523 5 ALQFLYAGVALFTRV-ALV-QGLSPRVFVVY 33 (370)
Q Consensus 5 ~~~~~~g~~~~~~k~-~~~-~g~~p~~~~~~ 33 (370)
+..+.++....+... ..+ .|.++.++...
T Consensus 18 ~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i 48 (417)
T d1pv7a_ 18 FYFFIMGAYFPFFPIWLHDINHISKSDTGII 48 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHHHHHH
Confidence 334455555444433 333 36888776544
No 6
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=8.14 E-value=5.5e+02 Score=21.54 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHHHHHHH
Q 017523 24 GLSPRVFVVYRQGTAALI 41 (370)
Q Consensus 24 g~~p~~~~~~R~~~~~l~ 41 (370)
.++|.++.+.-.+.-.+.
T Consensus 264 pl~~~qILwinli~d~lp 281 (472)
T d1wpga4 264 ALIPVQLLWVNLVTDGLP 281 (472)
T ss_dssp SCCHHHHHHHHHTTTHHH
T ss_pred cccHHHHHHHHHHhHHHH
Confidence 377888888776655443
No 7
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=6.27 E-value=6.5e+02 Score=20.66 Aligned_cols=22 Identities=5% Similarity=-0.145 Sum_probs=13.5
Q ss_pred HHHHHHHHhHHHHHHHhhcccc
Q 017523 68 FVASLIGVTANQNAYFEGLYLS 89 (370)
Q Consensus 68 ~~~g~~~~~~~~~~~~~al~~~ 89 (370)
...|.+.....+..++.+-...
T Consensus 199 ~~lG~~iLw~gW~gFN~gs~~~ 220 (383)
T d1u7ga_ 199 VFTGTAILYIGWFGFNAGSAGT 220 (383)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSS
T ss_pred hhHHHHHHHHHHHHhccccccc
Confidence 4445554467777777776654
No 8
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.03 E-value=4.4e+02 Score=19.25 Aligned_cols=28 Identities=14% Similarity=-0.084 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcccchhhhHhHHHHHHHh
Q 017523 276 IVTVLAGLFLDEEIFMGSLIGAFAVIIG 303 (370)
Q Consensus 276 ~a~~~~~~~~~e~~~~~~~~G~~lI~~g 303 (370)
........++|.+++.....+..+++..
T Consensus 78 ~~~~~~m~~~g~~l~~~s~~~~~i~igi 105 (199)
T d1iwga7 78 LGTFAVLAAFGFSINTLTMFGMVLAIGL 105 (199)
T ss_dssp HHHHHHHHTTTCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 3333445567777777776666665543
No 9
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.40 E-value=1.6e+02 Score=23.07 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=25.1
Q ss_pred HhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccc
Q 017523 83 FEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120 (370)
Q Consensus 83 ~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~ 120 (370)
|.++..+|+..+..+..+.|+.. .++|+|-+|.....
T Consensus 42 ytaIs~IP~~~G~~L~~L~~ig~-~igWlFA~e~~~a~ 78 (233)
T d1gl4a1 42 YTAISTIPETVGYSLLPLAPIGG-IIGWMFAVEQDGFK 78 (233)
T ss_dssp EEEEESCCHHHHGGGTTCTHHHH-HHHHHTCEECTTCC
T ss_pred EEEccCCChhHhhhhhhhhhhcC-ceeeeEEeecCCcc
Confidence 34566677777777777777765 45777777766543
No 10
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=2.90 E-value=1.5e+02 Score=19.16 Aligned_cols=15 Identities=20% Similarity=-0.159 Sum_probs=6.9
Q ss_pred HHHHhhhhheeccch
Q 017523 299 AVIIGLYVVLWGKAE 313 (370)
Q Consensus 299 lI~~g~~l~~~~~~~ 313 (370)
+++.|.+++..-|.|
T Consensus 30 v~V~~~~~~~~~ryR 44 (91)
T d1fftb2 30 IPAILMAVGFAWKYR 44 (91)
T ss_dssp THHHHHHHTTTTTTT
T ss_pred HHHHHHHHhhheeee
Confidence 344555555444444
Done!