Query 017524
Match_columns 370
No_of_seqs 343 out of 1383
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 15:49:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f6o_A Metacaspase-1; rossmann 100.0 7.6E-68 2.6E-72 518.4 25.4 264 73-370 45-350 (350)
2 4af8_A Metacaspase MCA2; hydro 100.0 3.1E-62 1.1E-66 481.0 27.6 263 74-370 85-356 (367)
3 3bij_A Uncharacterized protein 100.0 1.7E-45 5.7E-50 353.3 21.3 216 80-316 2-251 (285)
4 3uoa_B Mucosa-associated lymph 100.0 2.1E-27 7.3E-32 235.2 23.0 195 79-318 3-201 (390)
5 2j32_A Caspase-3; Pro-caspase3 99.7 5.8E-17 2E-21 152.3 19.7 226 79-366 14-248 (250)
6 3e4c_A Caspase-1; zymogen, inf 99.7 2.3E-16 7.8E-21 152.0 22.0 228 80-367 59-300 (302)
7 1m72_A Caspase-1; caspase, cys 99.7 1.7E-16 5.9E-21 150.8 20.8 227 79-365 30-265 (272)
8 1f1j_A Caspase-7 protease; cas 99.7 2.2E-16 7.5E-21 152.3 20.7 229 78-365 66-303 (305)
9 4ehd_A Caspase-3; caspase, apo 99.7 4.2E-16 1.4E-20 148.5 21.2 226 79-366 42-276 (277)
10 2nn3_C Caspase-1; cysteine pro 99.7 3.4E-16 1.2E-20 151.2 19.6 196 79-318 58-262 (310)
11 1nw9_B Caspase 9, apoptosis-re 99.7 1.8E-15 6.3E-20 144.1 23.7 232 79-365 19-274 (277)
12 3sir_A Caspase; hydrolase; 2.6 99.7 1.9E-16 6.6E-21 149.5 15.4 231 79-366 18-256 (259)
13 3od5_A Caspase-6; caspase doma 99.7 4.5E-15 1.5E-19 141.5 22.0 233 79-366 19-266 (278)
14 3h11_B Caspase-8; cell death, 99.7 8.3E-15 2.8E-19 139.1 22.0 229 79-365 15-260 (271)
15 2fp3_A Caspase NC; apoptosis, 99.7 8.4E-15 2.9E-19 142.0 21.1 208 80-320 60-287 (316)
16 2h54_A Caspase-1; allosteric s 99.4 1.1E-12 3.8E-17 117.0 14.3 121 80-226 42-170 (178)
17 3h11_A CAsp8 and FADD-like apo 99.1 7.6E-10 2.6E-14 104.9 13.2 184 103-319 54-245 (272)
18 1pyo_A Caspase-2; apoptosis, c 98.8 8.7E-08 3E-12 84.4 14.1 117 79-224 31-156 (167)
19 2dko_A Caspase-3; low barrier 98.7 3.3E-07 1.1E-11 79.0 13.0 117 79-224 14-137 (146)
20 1qtn_A Caspase-8; apoptosis, d 98.6 9.2E-07 3.1E-11 77.6 13.5 117 79-224 21-152 (164)
21 2ql9_A Caspase-7; cysteine pro 98.4 3.1E-06 1E-10 74.9 13.1 116 80-224 43-165 (173)
22 3p45_A Caspase-6; protease, hu 98.4 7E-06 2.4E-10 72.9 13.9 116 79-224 42-165 (179)
23 1sc3_B Interleukin-1 beta conv 93.1 0.39 1.3E-05 37.1 7.9 75 259-365 8-84 (88)
24 2ql9_B Caspase-7; cysteine pro 92.6 0.43 1.5E-05 37.5 7.6 84 259-364 10-94 (97)
25 2dko_B Caspase-3; low barrier 92.5 0.43 1.5E-05 38.0 7.6 85 259-365 16-101 (103)
26 2xzd_B Caspase-3; hydrolase-pr 92.0 0.53 1.8E-05 38.5 7.7 56 259-319 15-71 (118)
27 1gh9_A 8.3 kDa protein (gene M 91.7 0.059 2E-06 40.3 1.5 34 1-36 1-34 (71)
28 1pyo_B Caspase-2; apoptosis, c 91.5 0.92 3.2E-05 36.1 8.5 84 259-365 14-98 (105)
29 1qtn_B Caspase-8; apoptosis, d 90.3 0.89 3.1E-05 35.5 7.2 78 259-364 12-91 (95)
30 3rjm_B Caspase-2; caspase-2, c 85.7 3.6 0.00012 33.4 8.3 57 259-320 15-72 (117)
31 1qxf_A GR2, 30S ribosomal prot 71.4 2 7E-05 31.3 2.1 30 3-32 6-36 (66)
32 2yrc_A Protein transport prote 68.9 2.9 9.8E-05 29.9 2.4 35 2-36 7-47 (59)
33 3j20_W 30S ribosomal protein S 67.8 2.7 9.2E-05 30.4 2.1 30 3-32 14-44 (63)
34 2xzm_6 RPS27E; ribosome, trans 64.7 3.2 0.00011 31.5 2.1 30 3-32 31-61 (81)
35 7aat_A Aspartate aminotransfer 64.0 18 0.00061 34.0 7.8 60 100-167 72-137 (401)
36 2jr6_A UPF0434 protein NMA0874 54.2 8.5 0.00029 28.2 2.7 35 2-36 6-40 (68)
37 3u5c_b RP61, YS20, 40S ribosom 53.8 4.7 0.00016 30.7 1.3 29 3-31 33-62 (82)
38 2apo_B Ribosome biogenesis pro 53.5 8.9 0.0003 27.4 2.7 28 3-36 5-32 (60)
39 2js4_A UPF0434 protein BB2007; 53.4 9 0.00031 28.2 2.8 35 2-36 6-40 (70)
40 2pk7_A Uncharacterized protein 53.1 8.4 0.00029 28.3 2.6 35 2-36 6-40 (69)
41 1pft_A TFIIB, PFTFIIBN; N-term 53.0 7.1 0.00024 26.3 2.1 29 4-32 5-34 (50)
42 3iz6_X 40S ribosomal protein S 52.4 5.5 0.00019 30.5 1.5 29 3-31 35-64 (86)
43 3efo_B SEC24 related gene fami 52.3 5.8 0.0002 42.3 2.2 34 3-36 97-134 (770)
44 2ct7_A Ring finger protein 31; 51.3 10 0.00035 28.7 2.9 32 4-35 25-56 (86)
45 3j20_Y 30S ribosomal protein S 51.0 7.2 0.00025 26.8 1.8 27 5-31 20-46 (50)
46 2hf1_A Tetraacyldisaccharide-1 51.0 7.9 0.00027 28.3 2.1 35 2-36 6-40 (68)
47 3eh2_A Protein transport prote 50.6 6.5 0.00022 41.9 2.3 35 3-37 93-131 (766)
48 4ayb_P DNA-directed RNA polyme 48.5 8.1 0.00028 26.2 1.7 32 4-35 3-38 (48)
49 3eh1_A Protein transport prote 48.3 9.2 0.00032 40.7 3.0 32 4-36 85-120 (751)
50 3ca8_A Protein YDCF; two domai 48.3 35 0.0012 31.4 6.6 45 101-151 95-139 (266)
51 3h0g_L DNA-directed RNA polyme 47.6 9 0.00031 27.7 1.9 28 4-32 21-48 (63)
52 1pcx_A Protein transport prote 46.1 9.7 0.00033 40.8 2.8 33 4-36 112-148 (810)
53 1m2v_B SEC24, protein transpor 45.8 9.7 0.00033 41.5 2.7 33 4-36 228-264 (926)
54 1twf_I B12.6, DNA-directed RNA 44.0 14 0.00047 30.0 2.8 35 1-35 1-39 (122)
55 1cvr_A Gingipain R, RGPB; casp 42.8 73 0.0025 31.4 8.4 74 80-170 141-215 (435)
56 2jny_A Uncharacterized BCR; st 41.3 16 0.00054 26.6 2.5 35 2-36 8-42 (67)
57 1vq8_Z 50S ribosomal protein L 38.6 9 0.00031 29.2 0.8 28 4-31 27-54 (83)
58 3cai_A Possible aminotransfera 36.7 1.3E+02 0.0044 27.8 8.9 58 102-168 68-125 (406)
59 1dl6_A Transcription factor II 36.2 23 0.00079 24.8 2.6 31 2-32 9-40 (58)
60 4hvk_A Probable cysteine desul 36.1 48 0.0016 30.2 5.6 52 102-162 42-94 (382)
61 2avu_E Flagellar transcription 36.1 9.8 0.00034 33.6 0.7 29 1-29 131-161 (192)
62 2i0x_A Hypothetical protein PF 33.5 1.1E+02 0.0039 22.8 6.4 52 105-165 14-66 (85)
63 1o4s_A Aspartate aminotransfer 32.4 1.7E+02 0.0057 27.1 8.9 55 102-168 81-137 (389)
64 2dr1_A PH1308 protein, 386AA l 32.3 2.1E+02 0.0072 25.9 9.5 55 102-168 52-107 (386)
65 3ly1_A Putative histidinol-pho 31.7 2.2E+02 0.0075 25.5 9.5 55 102-168 50-104 (354)
66 1k81_A EIF-2-beta, probable tr 31.7 22 0.00076 22.5 1.7 31 5-35 1-34 (36)
67 3euc_A Histidinol-phosphate am 31.3 2.4E+02 0.0082 25.5 9.7 52 105-168 69-121 (367)
68 2hd9_A UPF0310 protein PH1033; 30.5 29 0.001 28.9 2.8 17 150-166 32-48 (145)
69 3op7_A Aminotransferase class 30.4 1.6E+02 0.0054 26.9 8.3 51 106-168 66-117 (375)
70 2zc0_A Alanine glyoxylate tran 29.8 1.7E+02 0.0057 27.1 8.4 56 100-167 76-133 (407)
71 1twf_L ABC10-alpha, DNA-direct 29.4 18 0.00061 26.6 1.1 25 5-30 29-53 (70)
72 1svv_A Threonine aldolase; str 29.0 1.7E+02 0.0058 26.2 8.1 57 102-170 48-104 (359)
73 4dq6_A Putative pyridoxal phos 28.8 1E+02 0.0034 28.3 6.6 55 101-167 69-125 (391)
74 1vjo_A Alanine--glyoxylate ami 28.7 2.2E+02 0.0077 26.0 9.1 54 103-168 67-121 (393)
75 1u08_A Hypothetical aminotrans 28.7 3.3E+02 0.011 24.8 10.3 57 100-168 68-127 (386)
76 3n0l_A Serine hydroxymethyltra 28.6 1.3E+02 0.0045 27.8 7.4 48 108-168 76-123 (417)
77 3aow_A Putative uncharacterize 27.9 1.9E+02 0.0066 27.6 8.7 51 105-167 124-175 (448)
78 1zpw_X Hypothetical protein TT 27.5 90 0.0031 23.6 4.9 55 103-166 16-71 (90)
79 2aus_D NOP10, ribosome biogene 27.0 39 0.0013 24.1 2.5 27 4-36 5-31 (60)
80 4eb5_A Probable cysteine desul 26.7 93 0.0032 28.4 5.9 52 102-162 42-94 (382)
81 3rq1_A Aminotransferase class 26.5 1.3E+02 0.0043 28.2 6.9 56 100-167 81-137 (418)
82 3ijw_A Aminoglycoside N3-acety 26.3 53 0.0018 30.3 3.9 26 137-164 15-40 (268)
83 2zyj_A Alpha-aminodipate amino 26.3 1.2E+02 0.0042 28.0 6.8 49 107-167 78-126 (397)
84 3f9t_A TDC, L-tyrosine decarbo 25.8 1.8E+02 0.0063 26.3 7.8 59 102-169 68-136 (397)
85 3ele_A Amino transferase; RER0 25.7 2.5E+02 0.0087 25.7 8.9 57 100-168 77-136 (398)
86 1vp4_A Aminotransferase, putat 25.7 1.6E+02 0.0056 27.6 7.6 58 100-169 86-146 (425)
87 3kax_A Aminotransferase, class 25.7 98 0.0034 28.3 5.9 52 104-167 64-117 (383)
88 3ffh_A Histidinol-phosphate am 25.2 2.8E+02 0.0095 25.0 8.9 52 105-168 69-120 (363)
89 2nut_A Protein transport prote 25.1 38 0.0013 36.0 3.1 34 3-36 61-100 (769)
90 3sma_A FRBF; N-acetyl transfer 24.9 58 0.002 30.4 3.9 28 135-164 20-47 (286)
91 2gbs_A Hypothetical protein RP 24.9 42 0.0015 28.1 2.7 17 149-165 39-55 (145)
92 1j32_A Aspartate aminotransfer 24.8 2.1E+02 0.0072 26.1 8.1 56 100-167 68-125 (388)
93 3lvm_A Cysteine desulfurase; s 24.7 89 0.003 29.2 5.4 57 102-167 67-124 (423)
94 3h14_A Aminotransferase, class 24.7 2.2E+02 0.0077 26.0 8.3 57 100-168 69-127 (391)
95 2k4x_A 30S ribosomal protein S 24.7 33 0.0011 23.8 1.7 29 4-32 18-46 (55)
96 3h0g_I DNA-directed RNA polyme 24.5 53 0.0018 26.1 3.2 36 1-36 1-40 (113)
97 1zce_A Hypothetical protein AT 24.3 44 0.0015 28.3 2.8 18 148-165 39-56 (155)
98 1yiz_A Kynurenine aminotransfe 24.3 3.5E+02 0.012 25.1 9.7 56 100-167 78-136 (429)
99 2nyg_A YOKD protein; PFAM02522 24.1 61 0.0021 29.9 3.9 26 137-164 13-38 (273)
100 2ar1_A Hypothetical protein; s 24.1 47 0.0016 28.7 2.9 18 149-166 55-72 (172)
101 2jrp_A Putative cytoplasmic pr 24.0 40 0.0014 25.5 2.2 27 4-32 2-28 (81)
102 2r2n_A Kynurenine/alpha-aminoa 23.7 2.4E+02 0.0083 26.4 8.4 106 105-228 84-206 (425)
103 1o58_A O-acetylserine sulfhydr 23.6 1.4E+02 0.0049 27.2 6.5 35 137-171 266-300 (303)
104 1m2o_A SEC23, protein transpor 23.5 37 0.0013 36.0 2.6 34 3-36 52-91 (768)
105 2eve_A Hypothetical protein ps 23.4 51 0.0017 28.1 2.9 17 149-165 37-53 (157)
106 3isl_A Purine catabolism prote 23.4 1.6E+02 0.0055 27.1 6.9 54 103-167 44-97 (416)
107 4es1_A BH0342 protein; ferredo 23.2 1.1E+02 0.0038 23.7 4.8 59 103-169 22-80 (100)
108 1ve1_A O-acetylserine sulfhydr 22.9 1.5E+02 0.0052 26.9 6.5 36 137-172 262-297 (304)
109 1elu_A L-cysteine/L-cystine C- 22.9 2.4E+02 0.0083 25.5 8.0 55 103-168 59-113 (390)
110 3piu_A 1-aminocyclopropane-1-c 22.9 3.4E+02 0.012 25.3 9.3 59 100-170 87-149 (435)
111 3nra_A Aspartate aminotransfer 22.8 2.9E+02 0.01 25.2 8.7 57 100-168 79-138 (407)
112 3cq5_A Histidinol-phosphate am 22.7 3E+02 0.01 24.9 8.7 52 105-168 75-128 (369)
113 1faq_A RAF-1; transferase, ser 22.7 39 0.0013 22.5 1.8 26 4-34 14-39 (52)
114 1p91_A Ribosomal RNA large sub 22.6 36 0.0012 30.1 2.1 27 4-32 2-28 (269)
115 2jne_A Hypothetical protein YF 22.5 41 0.0014 26.4 2.0 30 2-33 30-59 (101)
116 2k2d_A Ring finger and CHY zin 21.9 56 0.0019 24.4 2.7 29 4-32 37-65 (79)
117 3t18_A Aminotransferase class 21.6 1.7E+02 0.0058 27.2 6.7 51 100-162 80-131 (413)
118 1rv3_A Serine hydroxymethyltra 20.9 4.7E+02 0.016 25.2 10.1 89 107-206 94-190 (483)
119 3get_A Histidinol-phosphate am 20.6 1.5E+02 0.005 27.0 5.9 49 107-167 69-117 (365)
120 1t3i_A Probable cysteine desul 20.6 4.8E+02 0.017 23.7 10.2 57 103-168 72-130 (420)
121 1b5p_A Protein (aspartate amin 20.5 3.7E+02 0.013 24.6 8.8 56 100-167 69-126 (385)
122 3meb_A Aspartate aminotransfer 20.4 3.8E+02 0.013 25.4 9.1 74 152-229 141-218 (448)
123 1wg2_A Zinc finger (AN1-like) 20.3 52 0.0018 23.7 2.0 25 5-34 16-40 (64)
124 2p5d_A UPF0310 protein mjecl36 20.2 62 0.0021 26.9 2.9 14 151-165 36-49 (147)
No 1
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-68 Score=518.41 Aligned_cols=264 Identities=41% Similarity=0.757 Sum_probs=210.2
Q ss_pred CCCCCcCCceEEEEEEecCCCCCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHh
Q 017524 73 GQPPHAQGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG 152 (370)
Q Consensus 73 ~~~~~~~~~k~ALlIGInY~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~ 152 (370)
-+++.+++||+||||||||++...+|+||+|||++|+++|++++||+.++|++|+|++.++...||++||+++|+||+++
T Consensus 45 ~~~s~~~grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~~~~Gf~~~~I~lLtd~~~~~~~~pTr~nI~~aL~~L~~~ 124 (350)
T 4f6o_A 45 YQYSQCTGRRKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGYSSDDIVILTDDQNDLVRVPTRANMIRAMQWLVKD 124 (350)
T ss_dssp BCCCCCCSCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHHHHSCCCGGGEEEEETTSSCGGGSCCHHHHHHHHHHHHTT
T ss_pred cccCCCCCCEEEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCccceeeecccccccccCCCHHHHHHHHHHHHHh
Confidence 35788999999999999988888999999999999999999889999999999999887777789999999999999999
Q ss_pred CCCCCEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcCcCCCCCeEEEEEcCCCCCCCCCccc
Q 017524 153 CQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPF 232 (370)
Q Consensus 153 a~~gD~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~~l~~g~~l~~IlD~ChSG~~~~~p~ 232 (370)
+++||+|||||||||.+.++.+|||.||+||+|||+|++..|.|+|+||+++|+++++++++|++||||||||+++|+||
T Consensus 125 a~pgD~llfYFSGHG~q~~d~~gdE~dG~De~lvP~D~~~~g~I~ddeL~~~L~~~l~~g~~vt~IlD~ChSGt~ldlp~ 204 (350)
T 4f6o_A 125 AQPNDSLFLHYSGHGGQTEDLDGDEEDGMDDVIYPVDFETQGPIIDDEMHDIMVKPLQQGVRLTALFDSCHSGTVLDLPY 204 (350)
T ss_dssp CCTTCEEEEEEESCEEEC-----------CEEECCTTHHHHCCEEHHHHHHHHTTTCCTTCEEEEEECSSSCTTTTCCSE
T ss_pred CCCCCEEEEEEcCCceeccCCCCCcccCCceEEEeccCCcCCcccHHHHHHHHHhhcCCCCeEEEEEccCCCCccccccc
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred cccccccccc----ccccCCC--------------------CCCCc------------------cccCCCCEEEEEecCC
Q 017524 233 LCRMDRQGKY----IWEDHRP--------------------RSGMW------------------KGTSGGEAISFSGCDD 270 (370)
Q Consensus 233 ~~~~~r~g~~----~~~d~~~--------------------~~~~~------------------~~~~~~~~i~~Sac~~ 270 (370)
.|+. .|.+ .|++... ..+++ .+++++++|+||||+|
T Consensus 205 ~~~~--~g~~~e~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SgCkD 282 (350)
T 4f6o_A 205 TYST--KGIIKEPNIWKDVGQDGLQAAISYATGNRAALIGSLGSIFKTVKGGMGNNVDRERVRQIKFSAADVVMLSGSKD 282 (350)
T ss_dssp EEET--TEEEECCCC---------------------------------------------------CCCSEEEEEEEEC-
T ss_pred cccc--ccccCcchhhhhccccccchhhhhccccchhhcccchhhhhhhccccccccchhhhhhccCCCCCEEEEEecCC
Confidence 8863 3321 2332110 00011 1466889999999999
Q ss_pred CCccccccccCCCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhhhhcCCCCCCCCC
Q 017524 271 NQTSADTSALSKITSTGAMTYSFIQAIERGHGATYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFR 350 (370)
Q Consensus 271 ~Q~A~d~~~~~~~~~~G~fT~ali~aL~~~~~~Ty~~Ll~~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (370)
+|+|+|+.+.+ ..+|+|||+||++|+.++.+||.+||+.||+.|+.+ |+
T Consensus 283 ~QtSaD~~~~g--~~~GAmTyafi~aL~~~p~~tY~~Ll~~~r~~L~~k-----------------------------ys 331 (350)
T 4f6o_A 283 NQTSADAVEDG--QNTGAMSHAFIKVMTLQPQQSYLSLLQNMRKELAGK-----------------------------YS 331 (350)
T ss_dssp --------------CCCHHHHHHHHHHHHCCCCBHHHHHHHHHHHHTTT-----------------------------CS
T ss_pred CCchhhhccCC--ceeehhHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc-----------------------------CC
Confidence 99999999876 479999999999999999999999999999999854 57
Q ss_pred CccccccCCccCCCCCCccC
Q 017524 351 QEPQLTANEPFDVYTKPFSL 370 (370)
Q Consensus 351 Q~Pqlsss~~~d~~~~~f~l 370 (370)
|+||||+|++||++ .+|++
T Consensus 332 Q~PQLs~s~~~d~~-~~f~~ 350 (350)
T 4f6o_A 332 QKPQLSSSHPIDVN-LQFIM 350 (350)
T ss_dssp CEEEEEESSCCCTT-SBCCC
T ss_pred CCceecccCCCCCC-ccccC
Confidence 99999999999995 68975
No 2
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=100.00 E-value=3.1e-62 Score=480.97 Aligned_cols=263 Identities=35% Similarity=0.610 Sum_probs=220.1
Q ss_pred CCCCcCCceEEEEEEecCCCCCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCC--CCCchHHHHHHHHHHHHH
Q 017524 74 QPPHAQGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDP--LKRPTKYNMRMALYWLIQ 151 (370)
Q Consensus 74 ~~~~~~~~k~ALlIGInY~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~--~~~pT~~nI~~al~~L~~ 151 (370)
.++..+++|||||||||||+...+|+||+|||++|+++|++ +||+.++|++|+|++..| ...||++||+++|+||++
T Consensus 85 ~~~~~~grr~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~~-~GF~~~~i~~L~D~~~~p~~~~~pTr~nI~~aL~~L~~ 163 (367)
T 4af8_A 85 ATPLPGQTVRALFIGINYYGTSAALSGCCNDVKQMLATLQK-RGLPINEAVILVDEDNFPGRTDQPTRDNIVRYMAWLVK 163 (367)
T ss_dssp CCCCTTCCEEEEEEECCCTTSTTCCSSHHHHHHHHHHHHHH-TTCCCSEEEEEECCTTCTTCCBCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCeEEEEEEeCCCCCccCCCCHHHHHHHHHHHHHH-cCCCchheEEecccccccccccCCCHHHHHHHHHHHHH
Confidence 34667899999999999888889999999999999999974 899999999999975433 347999999999999999
Q ss_pred hCCCCCEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcCcCCCCCeEEEEEcCCCCCCCCCcc
Q 017524 152 GCQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLP 231 (370)
Q Consensus 152 ~a~~gD~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~~l~~g~~l~~IlD~ChSG~~~~~p 231 (370)
++++||+|||||||||.+.++. +||.||+||+|||+|++.+|.|.|+||+++|++++++++++++||||||||+++++|
T Consensus 164 ~a~pgD~l~fyFSGHG~q~~d~-~de~dg~De~LvP~D~~~~g~I~ddeL~~lLv~~l~~g~~v~vIlD~ChSGt~~dlp 242 (367)
T 4af8_A 164 DAKPGDVLFFHYSGHGTQCKSR-GDSDEKYDQCIAPVDFQKSGCIVDDDIHKLLFSRLPEKVRLTAVFDCGHSGSIMDLP 242 (367)
T ss_dssp TCCTTCEEEEEEESCEEEECCC------CCEEEECCTTHHHHCCEEHHHHHHHHTTTCCTTCEEEEEEECTTCCCCTTCS
T ss_pred hCCCCCEEEEEEcCCcCccCCC-CCCCCCcceEEEeecCCcCCCccHHHHHHHHHHhccCCCEEEEEEeCCCCCcccccc
Confidence 9999999999999999999985 688999999999999988899999999999889999899999999999999999999
Q ss_pred ccccccc--ccccccccCCCCCCCccccCCCCEEEEEecCCCCccccccccC-----CCCCCChhHHHHHHHHhcCCCCC
Q 017524 232 FLCRMDR--QGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALS-----KITSTGAMTYSFIQAIERGHGAT 304 (370)
Q Consensus 232 ~~~~~~r--~g~~~~~d~~~~~~~~~~~~~~~~i~~Sac~~~Q~A~d~~~~~-----~~~~~G~fT~ali~aL~~~~~~T 304 (370)
|.++... .+...+...+.+. ..++++++|+||||+++|+|+|....+ +...+|+|||+|+++|++++.+|
T Consensus 243 ~~~~~r~~~~~~~~~~~~~~~~---~~~~~~~vi~~Sac~d~QtSad~~~~~~f~~g~~~~~GafTyali~~L~~~~~~T 319 (367)
T 4af8_A 243 FTYVCSGGEQASGTPHMKRIRE---GNDVLGDVMMISGCADEQTSADVKNTATFGTGSTGAGGAATQCITCMLMNNQSLS 319 (367)
T ss_dssp EEEECCTTCCTTSCCCCEECSS---CCCCCSEEEEEEEECCCSCCCCCC-------CCCBCBSHHHHHHHHHHHCCSCCB
T ss_pred cccccccccccccchhhhhhcc---CCCCCCCEEEEEecCCCCchhhhhccccccccccCcccHHHHHHHHHHHhCCCCC
Confidence 9764321 1211121111111 125678899999999999999987531 23579999999999999988899
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhhhhcCCCCCCCCCCccccccCCccCCCCCCccC
Q 017524 305 YGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQEPQLTANEPFDVYTKPFSL 370 (370)
Q Consensus 305 y~~Ll~~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~Pqlsss~~~d~~~~~f~l 370 (370)
|.+||++||+.|++++ ++|+|||++|++||+| ++|+|
T Consensus 320 y~~Ll~~vr~~l~~~g----------------------------~~Q~PqLsss~~~d~~-~~F~l 356 (367)
T 4af8_A 320 YGKLLIETRDMLKRKR----------------------------FKQVPQLSASKAIDLD-QTFSL 356 (367)
T ss_dssp HHHHHHHHHHHHHHTT----------------------------BSCEEEEEESSCBCTT-SBCCS
T ss_pred HHHHHHHHHHHHHHhC----------------------------CCCCceeccCCCCCCC-ceeEe
Confidence 9999999999999753 6899999999999996 68987
No 3
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=100.00 E-value=1.7e-45 Score=353.33 Aligned_cols=216 Identities=26% Similarity=0.381 Sum_probs=173.1
Q ss_pred CceEEEEEEec-C----C-CCCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhC
Q 017524 80 GRKRALIVGVS-Y----R-HTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGC 153 (370)
Q Consensus 80 ~~k~ALlIGIn-Y----~-~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a 153 (370)
++|+||||||| | | +...+|++|+|||+.|+++|+ ++||+ |++|+|++ ||++||+++|+||++++
T Consensus 2 ~~~~ALlIGi~~Y~~~~Y~~~~~~L~~~~nDa~~~~~~L~-~~Gf~---v~~l~~~~------~t~~~i~~al~~l~~~~ 71 (285)
T 3bij_A 2 PKGIALALGLNAVDPKHYGGWAGKLNACEADAEDMAAIAA-ERGFA---VTTLMTKA------ATRAKVIDAIGKAAKAL 71 (285)
T ss_dssp CCEEEEEEECSCCCTTTTTTCCCCCSSHHHHHHHHHHHHH-HTTCE---EEEEEGGG------CCHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEeCCccccccCCCcccCCCCHHHHHHHHHHHH-HcCCc---eEEecCCc------cCHHHHHHHHHHHHHhC
Confidence 68999999999 4 2 345799999999999999996 58997 77777766 99999999999999999
Q ss_pred CCCCEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcCcCCCCCeEEEEEcCCCCCCCCC-ccc
Q 017524 154 QPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLD-LPF 232 (370)
Q Consensus 154 ~~gD~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~~l~~g~~l~~IlD~ChSG~~~~-~p~ 232 (370)
++||+|||||||||.+.++.+|+|.||++++|||+|. .|.++||.++| +.+++++++++||||||||++.+ +||
T Consensus 72 ~~~D~~~~yfSGHG~~~~~~~g~e~dg~~~~l~p~D~----~i~~~~l~~~l-~~l~~~~~~~vilD~C~SG~~~~~~p~ 146 (285)
T 3bij_A 72 GKGDIFMLSYSGHGGQVPDTSNDEPDGVDETWCLFDG----ELIDDELYALL-GKFAAGVRVLVFSDSCHSGTVVKMAYY 146 (285)
T ss_dssp CTTCEEEEEEESCEEEEECTTSCCTTCEEEEEECSSS----EEEHHHHHHHH-TTSCSSCEEEEEEECCCCCCHHHHHHT
T ss_pred CCCCEEEEEEcCCcccccCCCCCccCCCcceEEecCC----CccHHHHHHHH-HhccCCCeEEEEEecCCCCcccccccc
Confidence 9999999999999999998889999999999999994 58999999988 56776789999999999999988 777
Q ss_pred ccccccc------ccc--cccc----------CCC--------CCCCccccCCCCEEEEEecCCCCccccccccCCCCCC
Q 017524 233 LCRMDRQ------GKY--IWED----------HRP--------RSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITST 286 (370)
Q Consensus 233 ~~~~~r~------g~~--~~~d----------~~~--------~~~~~~~~~~~~~i~~Sac~~~Q~A~d~~~~~~~~~~ 286 (370)
..+.... |.. .+.. ... .........++++++||||+++|+|+|.. .+
T Consensus 147 ~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~lsa~~~~q~A~e~~------~~ 220 (285)
T 3bij_A 147 NGTTAARSAGPDEGEIRYRAMPQSVAMRTYRANREFYDTIQQKTKKVDLADVKASILLISGCQDNQLSQDGA------FN 220 (285)
T ss_dssp TC-------------CEESBCCHHHHHHHHHHTHHHHHHHHHHCCCCCTTTCSSEEEEEESSCTTSCCEECS------SS
T ss_pred ccccccccccccccccceeecCchhhhhhhhcchhHHHHHhhhcccccccCCCCCEEEEEeCCCCccccccc------cC
Confidence 4321000 100 1100 000 00000123456799999999999999963 68
Q ss_pred ChhHHHHHHHHhcCC-CCCHHHHHHHHHHHH
Q 017524 287 GAMTYSFIQAIERGH-GATYGSMLNSMRSTI 316 (370)
Q Consensus 287 G~fT~ali~aL~~~~-~~Ty~~Ll~~vr~~l 316 (370)
|+||++|+++|+++. .+||.+|+++|++.+
T Consensus 221 G~FT~aLl~~L~~~~~~~s~~~l~~~v~~~~ 251 (285)
T 3bij_A 221 GAFTGQLLRVWKNGLYKGSYRSFHKAIVRRM 251 (285)
T ss_dssp CHHHHHHHHHHGGGTCCSCHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHhhCCCCcCHHHHHHHHHHhc
Confidence 999999999999754 599999999998765
No 4
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Probab=99.96 E-value=2.1e-27 Score=235.18 Aligned_cols=195 Identities=16% Similarity=0.174 Sum_probs=152.5
Q ss_pred CCceEEEEEEecCCCCCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCE
Q 017524 79 QGRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDS 158 (370)
Q Consensus 79 ~~~k~ALlIGInY~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~ 158 (370)
.++|+||||||+.|....+|+||+|||++|+++|+ ++||+ |.+++| +|+++|+++|++|.+.++++|.
T Consensus 3 A~~r~ALIIGn~~Y~~~~~L~ga~~DA~~L~~~L~-~lGF~---V~~l~D--------lT~~eI~~aL~~f~~~~~~~D~ 70 (390)
T 3uoa_B 3 AKDKVALLIGNMNYREHPKLKAPLVDVYELTNLLR-QLDFK---VVSLLD--------LTEYEMRNAVDEFLLLLDKGVY 70 (390)
T ss_dssp BSCEEEEEEECCCCSSSCCCSTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHHTCCTTCE
T ss_pred CCCCEEEEEEecCCCCcccCCChHHHHHHHHHHHH-HcCCe---EEEeec--------CCHHHHHHHHHHHHhhCCCCCE
Confidence 46899999999944445789999999999999998 58996 677776 7999999999999999999999
Q ss_pred EEEEEeccccccCCCCCCCCCCcceeEEcccCCC----CCcccHHHHHHhhcCcCCCCCeEEEEEcCCCCCCCCCccccc
Q 017524 159 LLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFET----QGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTVLDLPFLC 234 (370)
Q Consensus 159 l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~----~g~I~ddeL~~~Lv~~l~~g~~l~~IlD~ChSG~~~~~p~~~ 234 (370)
++|||||||.+..+ ..||+|+|... ...|.-++|.+.|.+ ++ +...++||||||++...+...
T Consensus 71 ~l~yfsGHG~~~~g---------~~yL~p~Da~~~~~~~~~isl~~Ll~~l~~-~~-~K~kL~ILDACrg~~~~~~~~-- 137 (390)
T 3uoa_B 71 GLLYYAGHGYENFG---------NSFMVPVDAPNPYRSENCLCVQNILKLMQE-KE-TGLNVFLLDMCRKRNDYDDTI-- 137 (390)
T ss_dssp EEEEEESCEEEETT---------EEEECCTTCCSSCCGGGSEEHHHHHHHHHH-TT-CSEEEEEEESCCCCCTTCCCC--
T ss_pred EEEEEecCccccCC---------cceEEecCCCccccccceeeHHHHHHHHHh-cC-CCceEEEEECCCCCCcccccc--
Confidence 99999999998632 35999999863 235777888887753 33 456789999999964433110
Q ss_pred ccccccccccccCCCCCCCccccCCCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHH
Q 017524 235 RMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERGHGATYGSMLNSMRS 314 (370)
Q Consensus 235 ~~~r~g~~~~~d~~~~~~~~~~~~~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL~~~~~~Ty~~Ll~~vr~ 314 (370)
.+. . +.....+.+++.||.+++.|++.... ...+|+||++|+++|++ ..+..+||..|++
T Consensus 138 ----~~~----~--------~ip~~ad~Li~yAT~pG~~A~r~~~d--~~~gS~FtqaL~e~L~~--~~dl~~LLt~Vn~ 197 (390)
T 3uoa_B 138 ----PIL----D--------ALKVTANIVFGYATCQGAEAFEIQHS--GLANGIFMKFLKDRLLE--DKKITVLLDEVAE 197 (390)
T ss_dssp ----CCC----C--------CCCCCSCEEEEESSCTTCCCEECSSC--TTCCCHHHHHHTTTTTC--SSCHHHHHHHHHH
T ss_pred ----ccc----c--------cCcccCCcEEEEEcCCCcEeeecCCC--CCCCCHHHHHHHHHHcc--CCCHHHHHHHHHH
Confidence 010 0 01124568888899999999996521 13689999999999998 5899999999999
Q ss_pred HHhc
Q 017524 315 TIRN 318 (370)
Q Consensus 315 ~l~~ 318 (370)
.|..
T Consensus 198 ~Va~ 201 (390)
T 3uoa_B 198 DMGK 201 (390)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 9973
No 5
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=99.75 E-value=5.8e-17 Score=152.33 Aligned_cols=226 Identities=12% Similarity=0.083 Sum_probs=157.8
Q ss_pred CCceEEEEEEec-CCC--CCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhC-C
Q 017524 79 QGRKRALIVGVS-YRH--TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGC-Q 154 (370)
Q Consensus 79 ~~~k~ALlIGIn-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a-~ 154 (370)
..++.|||||+. |.. ...++.|+.+|++.|+++|+ .+||. |.+..| .|+++|+++|+++.+.. +
T Consensus 14 ~~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~~~ 81 (250)
T 2j32_A 14 PEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND--------LTREEIVELMRDVSKEDHS 81 (250)
T ss_dssp SEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCT
T ss_pred CCccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHHHhhcc
Confidence 468899999997 654 24789999999999999997 58996 667766 79999999999998864 6
Q ss_pred CCCEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcCc----CCCCCeEEEEEcCCCCCCCCCc
Q 017524 155 PGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRP----LPRGARLHAIIDACHSGTVLDL 230 (370)
Q Consensus 155 ~gD~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~~----l~~g~~l~~IlD~ChSG~~~~~ 230 (370)
..|.++|||.|||.. | .+++.|. .+.-++|.+.+... |. +.-.++|||||+......
T Consensus 82 ~~d~~v~~~lsHG~~----------g---~i~~~D~----~v~l~~i~~~f~~~~cp~L~-gKPKlf~iqACRg~~~~~- 142 (250)
T 2j32_A 82 KRSSFVCVLLSHGEE----------G---IIFGTNG----PVDLKKITNFFRGDRCRSLT-GKPKLFIIQACRGTELDC- 142 (250)
T ss_dssp TEEEEEEEEESCEET----------T---EEEETTE----EEEHHHHHHTTSTTTCGGGT-TSCEEEEEESCSEEECBC-
T ss_pred CCCEEEEEECCCCCC----------C---eEEecCC----cEEHHHHHHHhccccChhHc-CCCeEEEEecccCCcccC-
Confidence 679999999999984 1 5778873 56667787766421 22 333479999998433211
Q ss_pred ccccccccccccccccCCCCCCCccccCCCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHHhc-CCCCCHHHHH
Q 017524 231 PFLCRMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATYGSML 309 (370)
Q Consensus 231 p~~~~~~r~g~~~~~d~~~~~~~~~~~~~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL~~-~~~~Ty~~Ll 309 (370)
.. ..... ...+. ...+-....+.++..|+.++..|++.. ..++.|+.+|++.|++ .+.....+||
T Consensus 143 g~----~~~~~-~~~~~----~~~~ip~~aD~Li~ysT~pG~vs~r~~-----~~gS~fiq~L~~~l~~~~~~~dl~~il 208 (250)
T 2j32_A 143 GI----ATDSG-VDDDM----ACHKIPVEADFLYAYSTAPGYYSWRNS-----KDGSWFIQSLCAMLKQYADKLEFMHIL 208 (250)
T ss_dssp CC----CC---------------CCCCTTTTEEEEESSCTEECCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred Cc----cccCC-ccccc----cccccCCCCCEEEEEeCCCccEEecCC-----CCCcHHHHHHHHHHHHhCCCCCHHHHH
Confidence 10 00000 00000 001112346788888899999998876 3679999999999997 4568999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCcchhhhhhhhcCCCCCCCCCCccccccCCccCCCCC
Q 017524 310 NSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQEPQLTANEPFDVYTK 366 (370)
Q Consensus 310 ~~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~Pqlsss~~~d~~~~ 366 (370)
..|+..|.....+.. .. .. ..+..|.|+..++..=++|..
T Consensus 209 t~V~~~V~~~~~~~~----~~------------~~-~~~~kQ~P~~~ssL~k~lyf~ 248 (250)
T 2j32_A 209 TRVNRKVATEFESFS----FD------------AT-FHAKKQIPCIVSMLTKELYFY 248 (250)
T ss_dssp HHHHHHHHHHCCCCC----SS------------TT-TTTCBCCCEEEECCSSBCCSC
T ss_pred HHHHHHHHHHhcccc----CC------------cC-CCCceEccEeeeeccceEEeC
Confidence 999999987631000 00 00 013589999999887676643
No 6
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=99.74 E-value=2.3e-16 Score=152.01 Aligned_cols=228 Identities=16% Similarity=0.202 Sum_probs=158.1
Q ss_pred CceEEEEEEecCCCCCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHH--hCCCCC
Q 017524 80 GRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQ--GCQPGD 157 (370)
Q Consensus 80 ~~k~ALlIGInY~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~--~a~~gD 157 (370)
+++.|||||+..+....++.|+.+|+++|+++|+ .+||. |.+..| .|+++|.++|+.+.+ +.+..|
T Consensus 59 ~~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~~dh~~~d 126 (302)
T 3e4c_A 59 RTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQ-NLGYS---VDVKKN--------LTASDMTTELEAFAHRPEHKTSD 126 (302)
T ss_dssp CCCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTCGGGGGCS
T ss_pred CccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHHHhhhccCCCC
Confidence 4789999999833456899999999999999997 58997 667766 799999999999976 456789
Q ss_pred EEEEEEeccccccCCCCCCCCCCcceeEEcccCCC--CCcccHHHHHHhhcCc-CC--CCCeEEEEEcCCCCCCCCCccc
Q 017524 158 SLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFET--QGMIVDDEINTTLVRP-LP--RGARLHAIIDACHSGTVLDLPF 232 (370)
Q Consensus 158 ~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~--~g~I~ddeL~~~Lv~~-l~--~g~~l~~IlD~ChSG~~~~~p~ 232 (370)
.++|||.|||.+. +|++.|... ...+.-++|.+.+... .+ .+.-.++|||||+..... ..+
T Consensus 127 ~~vv~~lsHG~~~-------------~i~g~D~~~~~~~~v~l~~I~~~F~~~~CpsL~gKPKlffIQACRG~~~~-~~~ 192 (302)
T 3e4c_A 127 STFLVFMSHGIRE-------------GICGKKHSEQVPDILQLNAIFNMLNTKNCPSLKDKPKVIIIQAARGDSPG-VVW 192 (302)
T ss_dssp CEEEEEEEEEETT-------------EEECTTCCSSSCCEECHHHHHHHTSTTTCGGGTTSCEEEEEEEECSSSCC-CCC
T ss_pred EEEEEEeccCcCC-------------eEEeecccccCCcEEEHHHHHHHHhhhcchhhcCCccEEEEECCCCCCCC-cce
Confidence 9999999999972 577777531 1356677888877431 11 233357999999965442 111
Q ss_pred cccccccc---ccccccCCC--CCCCccccCCCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHHhc-CCCCCHH
Q 017524 233 LCRMDRQG---KYIWEDHRP--RSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATYG 306 (370)
Q Consensus 233 ~~~~~r~g---~~~~~d~~~--~~~~~~~~~~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL~~-~~~~Ty~ 306 (370)
.. +..+ .....+... ..+..+.....+.++..|+.++..|++.. ..++.|+.+|++.|++ .+.....
T Consensus 193 ~~--ds~~~~~~~~~~~~~~~~~d~~~~ip~~aDfLi~yST~pG~vS~R~~-----~~GSwFIqaL~~~l~~~~~~~dl~ 265 (302)
T 3e4c_A 193 FK--DSVGVSGNLSLPTTEEFEDDAIKKAHIEKDFIAFCSSTPDNVSWRHP-----TMGSVFIGRLIEHMQEYACSCDVE 265 (302)
T ss_dssp CC--CC--------CCCCCCCCCHHHHTSCSSCSEEEEEECCCCCCCSSST-----TCCCHHHHHHHHHHHHHTTTSCHH
T ss_pred ec--cCcccccccccccccccccccccccCCCCCEEEEEeCCCCceeecCC-----CCCcHHHHHHHHHHHHhCCCCCHH
Confidence 00 0000 000000000 00011112346788888999999999876 3678999999999997 4568899
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCcchhhhhhhhcCCCCCCCCCCccccc-cCCccCCCCCC
Q 017524 307 SMLNSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQEPQLT-ANEPFDVYTKP 367 (370)
Q Consensus 307 ~Ll~~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~Pqls-ss~~~d~~~~~ 367 (370)
+||..|+..+...+ +..|.|+.. ++..=++|..|
T Consensus 266 ~il~~V~~~v~~~~---------------------------~~kQ~P~~~~ssLtk~fyf~P 300 (302)
T 3e4c_A 266 EIFRKVRFSFEQPD---------------------------GRAQMPTTERVTLTRCFYLFP 300 (302)
T ss_dssp HHHHHHHHHTSSCC---------------------------SSCCCCEEECBCCCSBCCCCT
T ss_pred HHHHHHHHHHhCCC---------------------------CceeeeeeeccCCcceEEeCC
Confidence 99999999887642 247999985 77776766543
No 7
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=99.74 E-value=1.7e-16 Score=150.82 Aligned_cols=227 Identities=15% Similarity=0.118 Sum_probs=155.6
Q ss_pred CCceEEEEEEec-CCC-CCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHh-CCC
Q 017524 79 QGRKRALIVGVS-YRH-TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG-CQP 155 (370)
Q Consensus 79 ~~~k~ALlIGIn-Y~~-~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~-a~~ 155 (370)
..++.|||||+. |.. ...++.|+.+|+++|+++|+ .+||. |.+..| .|+++|.++|+.+.+. .+.
T Consensus 30 ~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~dh~~ 97 (272)
T 1m72_A 30 KHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLK-TLGFK---VTVFPN--------LKSEEINKFIQQTAEMDHSD 97 (272)
T ss_dssp SEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCTT
T ss_pred CCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------cCHHHHHHHHHHHHHhhcCC
Confidence 457899999998 654 35789999999999999997 58996 667666 7999999999999875 467
Q ss_pred CCEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEcCCCCCCCCCcc
Q 017524 156 GDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSGTVLDLP 231 (370)
Q Consensus 156 gD~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~----~l~~g~~l~~IlD~ChSG~~~~~p 231 (370)
.|.++|+|.|||.. .+|++.|. .+.-++|.+.+.. .|. |.-.++|||||+.... +..
T Consensus 98 ~d~~v~~~lsHG~~-------------~~i~~~D~----~v~l~~i~~~f~~~~cpsL~-gKPKlffiqACRg~~~-~~g 158 (272)
T 1m72_A 98 ADCLLVAVLTHGEL-------------GMLYAKDT----HYKPDNLWYYFTADKCPTLA-GKPKLFFIQACQGDRL-DGG 158 (272)
T ss_dssp EEEEEEEEESCEET-------------TEEECSSS----EECTTHHHHTTSTTTCGGGT-TSCEEEEEESCSSSBC-BCC
T ss_pred CCEEEEEEcCCCCC-------------CEEEecCC----cEEHHHHHHHhccccChhhc-CCceEEEEeCCCCCcc-cCC
Confidence 89999999999973 28999984 4555677766532 122 3334799999984332 211
Q ss_pred ccc-ccccccccccccCCCCCCCccccCCCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHHhc-CCCCCHHHHH
Q 017524 232 FLC-RMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATYGSML 309 (370)
Q Consensus 232 ~~~-~~~r~g~~~~~d~~~~~~~~~~~~~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL~~-~~~~Ty~~Ll 309 (370)
... +.+.++. .....+-....+.++..|+.++..|++.. ..++.|+.+|++.|++ ++.....+||
T Consensus 159 ~~~~~~~~d~~--------~~~~~~iP~~aD~Li~ysT~pG~vs~r~~-----~~GS~fiq~L~~~l~~~~~~~dl~~il 225 (272)
T 1m72_A 159 ITLSRTETDGS--------PSTSYRIPVHADFLIAFSTVPGYFSWRNT-----TRGSWFMQALCEELRYAGTERDILTLL 225 (272)
T ss_dssp EEEEC-----------------CEEECTTCSEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred ccccccccccc--------cccccccCCCCCEEEEEeCCCCcEeecCC-----CCCCHHHHHHHHHHHhhCCCCCHHHHH
Confidence 100 0001110 00001112346788888999999999865 3679999999999998 4568999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCcchhhhhhhhcCCCCCCCCCCccccccCCccCCCC
Q 017524 310 NSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQEPQLTANEPFDVYT 365 (370)
Q Consensus 310 ~~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~Pqlsss~~~d~~~ 365 (370)
..|+..|.....+. .+..- . . .+..|.|+..++..=++|.
T Consensus 226 t~V~~~V~~~~~s~----~~~~~-----~-~------~~~kQ~P~~~stLtk~lyf 265 (272)
T 1m72_A 226 TFVCQKVALDFESN----APDSA-----M-M------HQQKQVPCITSMLTRLLVF 265 (272)
T ss_dssp HHHHHHHHHHCCCC----CTTCG-----G-G------TTCBCCCEEEECCSSBCCC
T ss_pred HHHHHHHHHHhhcc----ccccc-----c-c------CCceEcceeeeeccceEEe
Confidence 99999997532000 00000 0 0 1357999998887666654
No 8
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=99.73 E-value=2.2e-16 Score=152.28 Aligned_cols=229 Identities=12% Similarity=0.095 Sum_probs=156.4
Q ss_pred cCCceEEEEEEec-CCCC--CCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhC-
Q 017524 78 AQGRKRALIVGVS-YRHT--NHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGC- 153 (370)
Q Consensus 78 ~~~~k~ALlIGIn-Y~~~--~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a- 153 (370)
...++.|||||+. |... ..++.|+.+|++.|+++|+ .+||. |.+..| .|+++|+++|+.+.+..
T Consensus 66 ~~~rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~~h 133 (305)
T 1f1j_A 66 FEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFR-SLGFD---VIVYND--------CSCAKMQDLLKKASEEDH 133 (305)
T ss_dssp SSEEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHH-HHTEE---EEEEES--------CCHHHHHHHHHHHHHSCG
T ss_pred CCCCCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHH-HCCCE---EEEecC--------cCHHHHHHHHHHHHHhhc
Confidence 3468899999998 6542 3567899999999999997 58996 667766 79999999999988753
Q ss_pred CCCCEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEcCCCCCCCCC
Q 017524 154 QPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSGTVLD 229 (370)
Q Consensus 154 ~~gD~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~----~l~~g~~l~~IlD~ChSG~~~~ 229 (370)
+..|.++|||.|||.+ .+|++.|. .+.-++|...+.. .|. +.-.++|||||+.....+
T Consensus 134 ~~~d~~vv~ilsHG~~-------------~~i~g~D~----~v~l~~I~~~f~~~~CpsL~-gKPKlffiQACRG~~~~~ 195 (305)
T 1f1j_A 134 TNAACFACILLSHGEE-------------NVIYGKDG----VTPIKDLTAHFRGDRSKTLL-EKPKLFFIQACRGTELDD 195 (305)
T ss_dssp GGEEEEEEEEESCEET-------------TEEECSSS----EEEHHHHHHTTSTTTCGGGT-TSCEEEEEESCCSSBCBC
T ss_pred CCCCEEEEEEecCCCC-------------CeEEecCC----eEEHHHHHHHhhhccChhhc-CCceEEEeccccCCcccC
Confidence 5679999999999985 18999984 5666777765531 122 333479999998544321
Q ss_pred cccccccccccccccccCCCCCCCccccCCCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHHhc-CCCCCHHHH
Q 017524 230 LPFLCRMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATYGSM 308 (370)
Q Consensus 230 ~p~~~~~~r~g~~~~~d~~~~~~~~~~~~~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL~~-~~~~Ty~~L 308 (370)
... .+ .+.....+..+ ..+-....+.++..|+.++..|++.. ..++.|+.+|++.|++ ++.....+|
T Consensus 196 -g~~--~~-~~~~~~~~~~~---~~~ip~~aD~LiayST~pG~vs~r~~-----~~GS~FiqaL~~~l~~~~~~~dl~~i 263 (305)
T 1f1j_A 196 -GIQ--AD-SGPINDTDANP---RYKIPVEADFLFAYSTVPGYYSWRSP-----GRGSWFVQALCSILEEHGKDLEIMQI 263 (305)
T ss_dssp -CBC---------------------CBCTTTTEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHH
T ss_pred -Ccc--cc-CCccccccccc---ccccCCCCCEEEEEECCCCeeccCCC-----CCCCHHHHHHHHHHHhhCCCCCHHHH
Confidence 110 00 01000000000 01112346788888899999999865 3678999999999997 345899999
Q ss_pred HHHHHHHHhccCCCCCCCCCCCcchhhhhhhhcCCCCCCCCCCccccccCCccCCCC
Q 017524 309 LNSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQEPQLTANEPFDVYT 365 (370)
Q Consensus 309 l~~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~Pqlsss~~~d~~~ 365 (370)
|..|+..|.....+.. ..+. ..+..|.|+..++..=++|.
T Consensus 264 lt~Vn~~V~~~~~~~~--~~~~---------------~~~~kQ~P~~~ssLtk~lyF 303 (305)
T 1f1j_A 264 LTRVNDRVARHFESQS--DDPH---------------FHEKKQIPCVVSMLTKELYF 303 (305)
T ss_dssp HHHHHHHHHHHCCCCC--SSGG---------------GSSCBCCCEEEECCSSBCCC
T ss_pred HHHHHHHHHHHhhccc--cccc---------------cCCceECceeeeeccceeec
Confidence 9999999987531000 0000 01358999999987766664
No 9
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=99.72 E-value=4.2e-16 Score=148.45 Aligned_cols=226 Identities=12% Similarity=0.090 Sum_probs=159.7
Q ss_pred CCceEEEEEEec-CCC--CCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHh-CC
Q 017524 79 QGRKRALIVGVS-YRH--TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG-CQ 154 (370)
Q Consensus 79 ~~~k~ALlIGIn-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~-a~ 154 (370)
.+++.||||++. |.. ...++.|+.+|+++|+++|+ .+||. |.+..| .|+++|.++|+.+.+. ..
T Consensus 42 ~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~dh~ 109 (277)
T 4ehd_A 42 PEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND--------LTREEIVELMRDVSKEDHS 109 (277)
T ss_dssp SEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCT
T ss_pred CCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHhhccc
Confidence 468999999998 653 35688999999999999997 58996 667766 7999999999999875 56
Q ss_pred CCCEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcCc----CCCCCeEEEEEcCCCCCCCCCc
Q 017524 155 PGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRP----LPRGARLHAIIDACHSGTVLDL 230 (370)
Q Consensus 155 ~gD~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~~----l~~g~~l~~IlD~ChSG~~~~~ 230 (370)
..|.++++|.+||.+ | +|++.|. .+.-++|...+... | .+.-.++|||||+.... +.
T Consensus 110 ~~d~~vv~ilSHG~~----------g---~i~g~D~----~v~l~~I~~~f~~~~CpsL-~gKPKlffiQACRG~~~-~~ 170 (277)
T 4ehd_A 110 KRSSFVCVLLSHGEE----------G---IIFGTNG----PVDLKKITNFFRGDRCRSL-TGKPKLFIIQACRGTEL-DC 170 (277)
T ss_dssp TEEEEEEEEESCEET----------T---EEEETTE----EEEHHHHHHTTSTTTCGGG-TTSCEEEEEESCCSSBC-BC
T ss_pred CCCEEEEEEEcCCCC----------C---EEEEeCC----cEeHHHHHHHhhhccCchh-cCCccEEEEecCCCCcc-cC
Confidence 789999999999987 1 7899984 47777887766421 2 23335799999985432 21
Q ss_pred ccccccccccccccccCCCCCCCccccCCCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHHhc-CCCCCHHHHH
Q 017524 231 PFLCRMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATYGSML 309 (370)
Q Consensus 231 p~~~~~~r~g~~~~~d~~~~~~~~~~~~~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL~~-~~~~Ty~~Ll 309 (370)
... ..... -++. ...+-....+.++..|+.++..|++.. ..++.|+.+|++.|++ .+.....+||
T Consensus 171 g~~----~~~~~-~~~~----~~~~ip~~aD~Li~yST~pG~vs~r~~-----~~GS~fIq~L~~~l~~~~~~~dl~~il 236 (277)
T 4ehd_A 171 GIE----TDSGV-DDDM----ACHKIPVEADFLYACSTAPGYYSWRNS-----KDGSWFIQSLCAMLKQYADKLEFMHIL 236 (277)
T ss_dssp CCC----C---------------CCCCTTTTEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred Ccc----ccCCc-cccc----cccccCCCCCEEEEEECCCCeEeecCC-----CCCcHHHHHHHHHHHHHCCCCCHHHHH
Confidence 110 00000 0000 011112346788888999999999875 3579999999999997 4568999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCcchhhhhhhhcCCCCCCCCCCccccccCCccCCCCC
Q 017524 310 NSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQEPQLTANEPFDVYTK 366 (370)
Q Consensus 310 ~~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~Pqlsss~~~d~~~~ 366 (370)
..|+..|.....+. ....- ..+..|.|+..++..=++|..
T Consensus 237 t~V~~~V~~~~es~----~~~~~-------------~~~~kQ~P~~~stLtk~lyf~ 276 (277)
T 4ehd_A 237 TRVNRKVATEFESF----SFDAT-------------FHAKKQIPCIVSMLTKELYFY 276 (277)
T ss_dssp HHHHHHHHHHCCCC----CSSGG-------------GTTCBCCCEEEECCSSBCCSC
T ss_pred HHHHHHHHHHhhhc----cCCCC-------------cCCceEeeEEEEecceEEEeC
Confidence 99999998643100 00000 013589999999877777643
No 10
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=99.71 E-value=3.4e-16 Score=151.15 Aligned_cols=196 Identities=13% Similarity=0.108 Sum_probs=141.8
Q ss_pred CCceEEEEEEec-CCC-CCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHh-CCC
Q 017524 79 QGRKRALIVGVS-YRH-TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG-CQP 155 (370)
Q Consensus 79 ~~~k~ALlIGIn-Y~~-~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~-a~~ 155 (370)
..++.||||++. |.. ...++.|+.+|+++|+++|+ .+||. |.+..| .|+++|.++|+.+.+. .+.
T Consensus 58 ~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~dh~~ 125 (310)
T 2nn3_C 58 KHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLK-TLGFK---VTVFPN--------LKSEEINKFIQQTAEMDHSD 125 (310)
T ss_dssp SBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHSSCGGG
T ss_pred CCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHHhccCC
Confidence 458899999998 654 35789999999999999997 58996 667766 7999999999999875 467
Q ss_pred CCEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEcCCCCCCCCCcc
Q 017524 156 GDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSGTVLDLP 231 (370)
Q Consensus 156 gD~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~----~l~~g~~l~~IlD~ChSG~~~~~p 231 (370)
.|.++|||.|||.. .+|++.|. .+.-++|...+.. .|. +.-.++|||||+...... .
T Consensus 126 ~D~~vv~ilSHG~~-------------g~i~g~D~----~v~l~~I~~~f~~~~CpsL~-gKPKlffiQACRG~~~d~-g 186 (310)
T 2nn3_C 126 ADCLLVAVLTAGEL-------------GMLYAKDT----HYKPDNLWYYFTADKCPTLA-GKPKLFFIQACQGDRLDG-G 186 (310)
T ss_dssp BSCEEEEEEEEEET-------------TEEECSSC----EECTHHHHGGGSTTTCGGGT-TSCEEEEEEEECCCCCCC-C
T ss_pred CCEEEEEEeCCCCC-------------CEEEecCC----cEEHHHHHHHhccccChhhc-CCceEEEEecccCCcccc-C
Confidence 89999999999973 28999984 4666777776632 122 333579999998544321 1
Q ss_pred ccc-ccccccccccccCCCCCCCccccCCCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHHhcC-CCCCHHHHH
Q 017524 232 FLC-RMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERG-HGATYGSML 309 (370)
Q Consensus 232 ~~~-~~~r~g~~~~~d~~~~~~~~~~~~~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL~~~-~~~Ty~~Ll 309 (370)
... +...++. .....+-....++++..|+.++..|++.. ..++.|+.+|++.|++. +.....+||
T Consensus 187 ~~~~~~~~d~~--------~~~~~~iP~~aD~LiayST~pG~vS~R~~-----~~GSwFIqaL~~~l~~~~~~~dl~~il 253 (310)
T 2nn3_C 187 ITLSRTETDGS--------PSTSYRIPVHADFLIAFSTVPGYFSWRNT-----TRGSWFMQALCEELRYAGTERDILTLL 253 (310)
T ss_dssp C---------------------CCCCCCSTTEEEEECCCCCEEESSSS-----EEEEHHHHHHHHHHHTTTTTSCHHHHH
T ss_pred ccccccccccc--------cccccccCCCCCEEEEEeCCCCceeecCC-----CCCCHHHHHHHHHHHhhCCCCCHHHHH
Confidence 100 0001110 00001112245788888999999999865 35799999999999984 458999999
Q ss_pred HHHHHHHhc
Q 017524 310 NSMRSTIRN 318 (370)
Q Consensus 310 ~~vr~~l~~ 318 (370)
..|+..|..
T Consensus 254 t~Vn~~V~~ 262 (310)
T 2nn3_C 254 TFVCQKVAL 262 (310)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999974
No 11
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=99.71 E-value=1.8e-15 Score=144.07 Aligned_cols=232 Identities=14% Similarity=0.093 Sum_probs=155.5
Q ss_pred CCceEEEEEEec-CCC--CCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhC-C
Q 017524 79 QGRKRALIVGVS-YRH--TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGC-Q 154 (370)
Q Consensus 79 ~~~k~ALlIGIn-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a-~ 154 (370)
.++..||||++. |.. ...++.|+.+|+++|+++|+ .+||. |.+..| .|+++|+++|+++.+.. +
T Consensus 19 ~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~h~ 86 (277)
T 1nw9_B 19 EPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFS-SLHFM---VEVKGD--------LTAKKMVLALLELARQDHG 86 (277)
T ss_dssp SSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTEE---EEEEES--------CCHHHHHHHHHHHHHSCCT
T ss_pred CcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEcC--------CCHHHHHHHHHHHHHhhcc
Confidence 468999999998 653 24688999999999999997 58996 667666 79999999999998764 5
Q ss_pred CCCEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEcCCCCCCCCCc
Q 017524 155 PGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSGTVLDL 230 (370)
Q Consensus 155 ~gD~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~----~l~~g~~l~~IlD~ChSG~~~~~ 230 (370)
..|.++++|.+||.+... . +.+..+.+.|.. .+.-++|.+.+.. .|. |.=.++|||||+..... .
T Consensus 87 ~~D~~vv~ilSHG~~~~~---~---~~~g~iy~~D~~---~v~l~~i~~~f~~~~CpsL~-gKPKlffiQACRG~~~d-~ 155 (277)
T 1nw9_B 87 ALDCCVVVILSHGCQASH---L---QFPGAVYGTDGC---PVSVEKIVNIFNGTSCPSLG-GKPKLFFIQACGGEQKD-H 155 (277)
T ss_dssp TCSEEEEEEEEEEECCCC---S---SSCCEEECTTSC---EEEHHHHHHTTCTTTCGGGT-TSCEEEEEEEEC-------
T ss_pred cCCeEEEEEeCCCCcccc---c---cCCCcEEecCCc---eeeHHHHHHHhcccCChhHc-CCCcEEEEeccCCCccc-C
Confidence 679999999999988532 1 112367788732 4666777776632 122 33347999999854331 1
Q ss_pred cccccccc--c---cccccccCCC----------CCCCccccCCCCEEEEEecCCCCccccccccCCCCCCChhHHHHHH
Q 017524 231 PFLCRMDR--Q---GKYIWEDHRP----------RSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQ 295 (370)
Q Consensus 231 p~~~~~~r--~---g~~~~~d~~~----------~~~~~~~~~~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~ 295 (370)
........ . +.-...+..+ .....+-....+.++..|+.++.+|++.. ..++.|+.+|++
T Consensus 156 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~aD~Li~ysT~pG~vs~R~~-----~~GS~fiq~L~~ 230 (277)
T 1nw9_B 156 GFEVASTSPEDESPGSNPEPDATPFQEGLRTFDQLDAISSLPTPSDIFVSYSTFPGFVSWRDP-----KSGSWYVETLDD 230 (277)
T ss_dssp ---------------------CBCCC------------CCCCCSCSEEEEEECCCCBSSTTCT-----TSCBHHHHHHHH
T ss_pred CceeccCCcccccccccccccccccccccccccccccccccCCCCCEEEEEcCCCCeEEEcCC-----CCCcHHHHHHHH
Confidence 11000000 0 0000000000 00011122356788888999999999865 357899999999
Q ss_pred HHhc-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhhhhcCCCCCCCCCCccccccCCccCCCC
Q 017524 296 AIER-GHGATYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQEPQLTANEPFDVYT 365 (370)
Q Consensus 296 aL~~-~~~~Ty~~Ll~~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~Pqlsss~~~d~~~ 365 (370)
.|++ .+.....+||..|+..|.... ++.|.|+..++..=++|.
T Consensus 231 ~l~~~~~~~dl~~ilt~V~~~V~~~~---------------------------~~kQ~P~~~stL~k~lyf 274 (277)
T 1nw9_B 231 IFEQWAHSEDLQSLLLRVANAVSVKG---------------------------IYKQMPGCFNFLRKKLFF 274 (277)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHTTC---------------------------CSCCCCCCEECCSSBCCC
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhhcc---------------------------CccCcccceeeeceeEec
Confidence 9997 456899999999999998653 257899888887666654
No 12
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=99.70 E-value=1.9e-16 Score=149.50 Aligned_cols=231 Identities=13% Similarity=0.080 Sum_probs=145.7
Q ss_pred CCceEEEEEEec-CCC-CCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHh-CCC
Q 017524 79 QGRKRALIVGVS-YRH-TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG-CQP 155 (370)
Q Consensus 79 ~~~k~ALlIGIn-Y~~-~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~-a~~ 155 (370)
..++.||||++. |.. ...++.|+.+|+++|+++|+ .+||. |.+..| .|.++|.++|+.+.+. .+.
T Consensus 18 ~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~~h~~ 85 (259)
T 3sir_A 18 KNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLK-QLDFE---VTVYKD--------CRYKDILRTIEYSASQNHSD 85 (259)
T ss_dssp SEEEEEEEEEECCC-----------CCHHHHHHHHHH-HTTCE---EEEEEE--------CSHHHHHHHHHHHHTSCCTT
T ss_pred CCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHHHhhccC
Confidence 457899999998 654 34677899999999999997 58997 667766 7999999999999864 567
Q ss_pred CCEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEcCCCCCCCCCcc
Q 017524 156 GDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSGTVLDLP 231 (370)
Q Consensus 156 gD~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~----~l~~g~~l~~IlD~ChSG~~~~~p 231 (370)
.|.++|+|.|||.+ + +|++.|. .+.-++|.+.+.. .| .+.-.++|||||+...... .
T Consensus 86 ~d~~v~~~lsHG~~--g-----------~i~~~D~----~v~l~~i~~~f~~~~cpsL-~gKPKlf~iQACRG~~~~~-g 146 (259)
T 3sir_A 86 SDCILVAILSHGEM--G-----------YIYAKDT----QYKLDNIWSFFTANHCPSL-AGKPKLFFIQACQGDRLDG-G 146 (259)
T ss_dssp EEEEEEEEEECTTC--C-----------CCCCTTH----HHHHHHTTGGGSTTTCGGG-SSSCEEEEEEEETTSCEEC--
T ss_pred CCEEEEEEecCCCC--C-----------eEEeCCC----cEEHHHHHHHhhhccCccc-cCCCCEEEEecCCCCcccC-C
Confidence 89999999999987 1 6778773 3555666655531 11 1333479999999543211 1
Q ss_pred cccccccccccccccCCCCCCCccccCCCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHHhcC-CCCCHHHHHH
Q 017524 232 FLCRMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERG-HGATYGSMLN 310 (370)
Q Consensus 232 ~~~~~~r~g~~~~~d~~~~~~~~~~~~~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL~~~-~~~Ty~~Ll~ 310 (370)
.... ... ...+. ......+-....++++..|+.++..|++.. ..++.|+.+|++.|++. +.....+||.
T Consensus 147 ~~~~---~~~-~~~dg-~~~~~~~ip~~aD~Li~yST~pG~vs~r~~-----~~GS~fiq~L~~~l~~~~~~~dl~~ilt 216 (259)
T 3sir_A 147 VTMQ---RSQ-TETDG-DSSMSYKIPVHADFLIAYSTVPGFYSWRNT-----TRGSWFMQSLCAELAANGKRLDILTLLT 216 (259)
T ss_dssp ---------------------CEECCCCTTEEEEEEEECCSCCCSSC-----CCSCHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred cccc---cCc-ccccC-cccccccCCCCCCEEEEEECCCCeEeecCC-----CCCcHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 0000 000 00000 000011112346788888889999999876 36799999999999973 4589999999
Q ss_pred HHHHHHhccCCCCCCCCCCCcchhhhhhhhcCCCCCCCCCCccccccCCccCCCCC
Q 017524 311 SMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQEPQLTANEPFDVYTK 366 (370)
Q Consensus 311 ~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~Pqlsss~~~d~~~~ 366 (370)
.|+..|.....+. .+... . ..+..|.|+.+|+..=++|..
T Consensus 217 ~V~~~V~~~~~s~----~~~~~-----~-------~~~~kQ~P~~~stLtk~lyF~ 256 (259)
T 3sir_A 217 FVCQRVAVDFESC----TPDTP-----E-------MHQQKQIPCITTMLTRILRFS 256 (259)
T ss_dssp HHHHHHHTTC------------------------------CCCEEEECCSSBCCCC
T ss_pred HHHHHHHHHhccc----CCccc-----c-------cCCceEeeEeEEeeceEEEcC
Confidence 9999998532000 00000 0 013579999999887777643
No 13
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=99.68 E-value=4.5e-15 Score=141.49 Aligned_cols=233 Identities=12% Similarity=0.119 Sum_probs=158.6
Q ss_pred CCceEEEEEEec-CCC--CCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHh-CC
Q 017524 79 QGRKRALIVGVS-YRH--TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG-CQ 154 (370)
Q Consensus 79 ~~~k~ALlIGIn-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~-a~ 154 (370)
..++.||||++. |.. ...++.|+.+|+++|+++|+ .+||. |.+..| .|.++|.++|+.+.+. -.
T Consensus 19 ~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~~h~ 86 (278)
T 3od5_A 19 RRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFS-DLGFE---VKCFND--------LKAEELLLKIHEVSTVSHA 86 (278)
T ss_dssp SBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHHSCCT
T ss_pred CCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHhhccc
Confidence 467899999998 653 35789999999999999997 58996 666666 7999999999998663 46
Q ss_pred CCCEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEcCCCCCCCCCc
Q 017524 155 PGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSGTVLDL 230 (370)
Q Consensus 155 ~gD~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~----~l~~g~~l~~IlD~ChSG~~~~~ 230 (370)
..|.++++|.+||.+ | +|++.|. .+.-++|.+.+.. .|. |.-.++|||||+.... +.
T Consensus 87 ~~d~~vv~ilSHG~~----------g---~i~g~D~----~v~l~~I~~~f~~~~CpsL~-gKPKlffiQACRG~~~-~~ 147 (278)
T 3od5_A 87 DADCFVCVFLSHGEG----------N---HIYAYDA----KIEIQTLTGLFKGDKCHSLV-GKPKIFIIQACRGNQH-DV 147 (278)
T ss_dssp TBSCEEEEEESCEET----------T---EEECSSS----EEEHHHHHHTTSTTTCGGGT-TSCEEEEEESCCSSBC-BC
T ss_pred CCCEEEEEEECCCCC----------C---EEEEeCC----eEEHHHHHHHhccccChhhc-CCCcEEEEecCCCCcc-cC
Confidence 789999999999985 1 7889884 3777788877642 122 3334799999994432 21
Q ss_pred ccccccccccc-----ccc-ccCCCCCCCccccCCCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHHhcC-CCC
Q 017524 231 PFLCRMDRQGK-----YIW-EDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERG-HGA 303 (370)
Q Consensus 231 p~~~~~~r~g~-----~~~-~d~~~~~~~~~~~~~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL~~~-~~~ 303 (370)
.... ...+. +.. +.........+-....++++..|+.++..|+... ..++.|+.+|++.|++. +..
T Consensus 148 g~~~--~~~~~~~~~~l~~~~~~~~~~~~~~iP~~aD~Li~yST~pG~vs~R~~-----~~GS~fIq~L~~~l~~~~~~~ 220 (278)
T 3od5_A 148 PVIP--LDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRET-----VNGSWYIQDLCEMLGKYGSSL 220 (278)
T ss_dssp EECC--C---------------------CCCEETTTTEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTS
T ss_pred Ceec--ccccccccccccccccccccccccccCCCCCeEEEEeCCCCeEEecCC-----CCCcHHHHHHHHHHHhhCCCC
Confidence 1110 00000 000 0000000011112346788989999999999876 35789999999999973 468
Q ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhhhhcCCCCCCCCCCccccccCCccCCCCC
Q 017524 304 TYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQEPQLTANEPFDVYTK 366 (370)
Q Consensus 304 Ty~~Ll~~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~Pqlsss~~~d~~~~ 366 (370)
...+||..|+..|.....+. .++.- .....|.|+..++..=++|..
T Consensus 221 dl~~ilt~Vn~~V~~~~~~~----~~~~~-------------~~~~kQ~P~~~stLtk~lyf~ 266 (278)
T 3od5_A 221 EFTELLTLVNRKVSQRRVDF----CKDPS-------------AIGKKQVPCFASMLTKKLHFF 266 (278)
T ss_dssp CHHHHHHHHHHHHHHCCCCC----CSSGG-------------GTTCBCCCEEEECCCSBCCCC
T ss_pred CHHHHHHHHHHHHHHHhhhc----CCCcc-------------ccCceEcceeEEecceEEEeC
Confidence 99999999999998654110 00000 013579999888877666643
No 14
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=99.66 E-value=8.3e-15 Score=139.14 Aligned_cols=229 Identities=14% Similarity=0.089 Sum_probs=154.8
Q ss_pred CCceEEEEEEec-CCCC---------CCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHH
Q 017524 79 QGRKRALIVGVS-YRHT---------NHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYW 148 (370)
Q Consensus 79 ~~~k~ALlIGIn-Y~~~---------~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~ 148 (370)
.++..||||++. |... ..+..|+.+|+++|+++|+ .+||. |.+..| .|.++|.++|++
T Consensus 15 ~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~ 82 (271)
T 3h11_B 15 KPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFE-ELHFE---IKPHDD--------CTVEQIYEILKI 82 (271)
T ss_dssp SSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHH
T ss_pred CCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHH
Confidence 467999999997 6541 4577899999999999997 58996 667666 799999999999
Q ss_pred HHHh-CCCCCEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEcCCC
Q 017524 149 LIQG-CQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACH 223 (370)
Q Consensus 149 L~~~-a~~gD~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~----~l~~g~~l~~IlD~Ch 223 (370)
+.+. -+..|.++++|.+||.+ .+|++.|.. .+.-++|.+.+.. .|. |.-.++|||||+
T Consensus 83 ~~~~~h~~~d~~v~~ilSHG~~-------------g~i~g~D~~---~v~l~~I~~~f~~~~CpsL~-gKPKlffiQACR 145 (271)
T 3h11_B 83 YQLMDHSNMDCFICCILSHGDK-------------GIIYGTDGQ---EAPIYELTSQFTGLKCPSLA-GKPKVFFIQACQ 145 (271)
T ss_dssp HHHSCCTTCSCEEEEEESCEET-------------TEEECTTSC---EEEHHHHHGGGSTTTCGGGT-TSCEEEEEESCC
T ss_pred HHHhcCCCCCEEEEEEEcCCcC-------------CEEEecCCC---eecHHHHHHHhhhccChhhc-CCccEEEEeccC
Confidence 9874 35689999999999985 178999853 3566777776632 122 333479999998
Q ss_pred CCCCCCcccccccccccccccccCCCCCCCccccCCCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHHhcC-C-
Q 017524 224 SGTVLDLPFLCRMDRQGKYIWEDHRPRSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERG-H- 301 (370)
Q Consensus 224 SG~~~~~p~~~~~~r~g~~~~~d~~~~~~~~~~~~~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL~~~-~- 301 (370)
...... ......+..+....+..........-....++++..|+.++..|+... ..++.|+.+|++.|++. +
T Consensus 146 G~~~~~-gv~~~~~~~~~~~~e~d~~~~~~~~iP~~aD~Li~yST~pG~vs~R~~-----~~GS~fIq~L~~~l~~~~~~ 219 (271)
T 3h11_B 146 GDNYQK-GIPVETASEEQPYLEMALSSPQTRYIPDEADFLLGMATVNNCVSYRNP-----AEGTWYIQSLCQSLRERCPR 219 (271)
T ss_dssp SSBCC-----------------------CCCCSCSSSSEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHGGG
T ss_pred CCcccC-CceeccCCccccccccccccccccccCCCCceEEEEECCCCceeecCC-----CCCcHHHHHHHHHHHHhCCC
Confidence 654321 110000000000000000000000112346788888999999999876 35789999999999873 4
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhhhhcCCCCCCCCCCccccccCCccCCCC
Q 017524 302 GATYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVTMLLTGGSLSGGFRQEPQLTANEPFDVYT 365 (370)
Q Consensus 302 ~~Ty~~Ll~~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~Pqlsss~~~d~~~ 365 (370)
.....+||..|+..|.... .. .....|.|+..++..=++|.
T Consensus 220 ~~dl~~ilt~Vn~~V~~~~--~~---------------------~~~~kQ~P~~~stLtk~lyf 260 (271)
T 3h11_B 220 GDDILTILTEVNYEVSNKD--DK---------------------KNMGKQMPQPTFTLRKKLVF 260 (271)
T ss_dssp TCCHHHHHHHHHHHHHTC-----------------------------CCCCCEEEECCCSBCCC
T ss_pred CCCHHHHHHHHHHHHhhcc--cC---------------------CCCCEEeeEEEEEeeeEEEe
Confidence 5899999999999998753 10 01257999999887766654
No 15
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=99.65 E-value=8.4e-15 Score=141.95 Aligned_cols=208 Identities=13% Similarity=0.129 Sum_probs=142.5
Q ss_pred CceEEEEEEec-CCCCCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhC-C-CC
Q 017524 80 GRKRALIVGVS-YRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGC-Q-PG 156 (370)
Q Consensus 80 ~~k~ALlIGIn-Y~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a-~-~g 156 (370)
.++.||||++. |.....++.|+.+|+++|+++|+ .+||. |.+..| .|+++|+++|+++.+.. . ..
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~-~LGF~---V~~~~d--------lt~~em~~~l~~f~~~~h~~~~ 127 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQ-ELNFT---IFPYGN--------VNQDQFFKLLTMVTSSSYVQNT 127 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHH-HTTEE---EEEECS--------CCHHHHHHHHHHHHTSHHHHTC
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEccC--------CCHHHHHHHHHHHHHHhhcCCC
Confidence 78999999997 66322789999999999999997 58996 666666 79999999999998765 3 78
Q ss_pred CEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEcCCCCCCCCCccc
Q 017524 157 DSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHSGTVLDLPF 232 (370)
Q Consensus 157 D~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~----~l~~g~~l~~IlD~ChSG~~~~~p~ 232 (370)
|.++++|.+||.+... +.+|++.|.. .+.-++|.+.+.. .|. |.=.++|||||+.... +..+
T Consensus 128 D~~vv~ilSHG~~~~g---------~g~i~g~D~~---~v~l~~I~~~f~~~~CpsL~-gKPKlffiQACRG~~~-d~g~ 193 (316)
T 2fp3_A 128 ECFVMVLMTHGNSVEG---------KEKVEFRDGS---VVDMQKIKDHFQTAKCPYLV-NKPKVLMFPFARGDEY-DLGH 193 (316)
T ss_dssp SCEEEEEESCEECCTT---------CCEEECTTSC---EEEHHHHHHTTSTTTCGGGT-TSCEEEEESCC----------
T ss_pred CEEEEEEccCCCccCC---------CCEEEeecCc---EEeHHHHHHHhccccChhhc-CCceEEEEecCCCCcc-cCCc
Confidence 9999999999998642 2489999853 3666778776642 122 3335799999986443 2111
Q ss_pred ccccccccc----cccc-------cCCC-CCCCccccCCCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHHhc-
Q 017524 233 LCRMDRQGK----YIWE-------DHRP-RSGMWKGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER- 299 (370)
Q Consensus 233 ~~~~~r~g~----~~~~-------d~~~-~~~~~~~~~~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL~~- 299 (370)
.. +.... .... .... .....+-....++++..|+.++..|++.. ..++.|+.+|++.|++
T Consensus 194 ~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~iP~~aD~Li~yST~pG~vS~R~~-----~~GSwFIq~L~~~l~~~ 266 (316)
T 2fp3_A 194 PK--NQGNLMEPVYTAQEEKWPDTQTEGIPSPSTNVPSLADTLVCYANTPGYVTHRDL-----DTGSWYIQKFCQVMADH 266 (316)
T ss_dssp --------------------------------CCCCCCCCSEEEEECCCSCCCBTTTB-----CHHHHHHHHHHHHHHHH
T ss_pred ee--ccCcccccccccccccccccccccccccccccCCCCCEEEEEeCCCCceeccCC-----CCCCHHHHHHHHHHHHH
Confidence 00 00000 0000 0000 00011112356788888999999999865 3568999999999997
Q ss_pred CCCCCHHHHHHHHHHHHhccC
Q 017524 300 GHGATYGSMLNSMRSTIRNTD 320 (370)
Q Consensus 300 ~~~~Ty~~Ll~~vr~~l~~~~ 320 (370)
.+.....+||..|+..|....
T Consensus 267 ~~~~dl~~ilt~Vn~~V~~~~ 287 (316)
T 2fp3_A 267 AHDTDLEDILKKTSEAVGNKR 287 (316)
T ss_dssp TTTSCHHHHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 456899999999999998753
No 16
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=99.45 E-value=1.1e-12 Score=117.00 Aligned_cols=121 Identities=19% Similarity=0.249 Sum_probs=92.4
Q ss_pred CceEEEEEEecCCCCCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHH--hCCCCC
Q 017524 80 GRKRALIVGVSYRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQ--GCQPGD 157 (370)
Q Consensus 80 ~~k~ALlIGInY~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~--~a~~gD 157 (370)
++++|||||+..+....++.|+.+||+.|+++|+ .+||. |.+..| .|+++|+++|+.+.+ +.+..|
T Consensus 42 ~~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~f~~~~d~~~~d 109 (178)
T 2h54_A 42 RTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQ-NLGYS---VDVKKN--------LTASDMTTELEAFAHRPEHKTSD 109 (178)
T ss_dssp CCCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTCGGGGGCS
T ss_pred cCCEEEEEehhhcCCCccCCCCHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHHHHhhhhcCCCC
Confidence 5789999999833456789999999999999997 58997 667766 799999999999986 346789
Q ss_pred EEEEEEeccccccCCCCCCCCCCcceeEEcccCC--CCCcccHHHHHHhhcCc----CCCCCeEEEEEcCCCCCC
Q 017524 158 SLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFE--TQGMIVDDEINTTLVRP----LPRGARLHAIIDACHSGT 226 (370)
Q Consensus 158 ~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~--~~g~I~ddeL~~~Lv~~----l~~g~~l~~IlD~ChSG~ 226 (370)
.++|||.|||.+. .|+..|.. ....+.-++|...+... |. +.-.++|||||+.+.
T Consensus 110 ~~v~~~lsHG~~g-------------~i~g~D~~~~~~~~v~l~~I~~~f~~~~CpsL~-gKPKlffiqACRg~~ 170 (178)
T 2h54_A 110 STFLVFMSHGIRE-------------GICGKKHSEQVPDILQLNAIFNMLNTKNCPSLK-DKPKVIIIQACRGDS 170 (178)
T ss_dssp CEEEEEESCBCSS-------------CEECTTCCSSSCCEECHHHHHHHHSTTTCGGGT-TSCEEEEEESCSSSB
T ss_pred EEEEEEecCCCCC-------------eEEeecCCcccCcEEEHHHHHHHHhhcCChhhc-CCceEEEEECCCCCC
Confidence 9999999999871 46677652 11246667787776431 22 334579999998644
No 17
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=99.09 E-value=7.6e-10 Score=104.94 Aligned_cols=184 Identities=11% Similarity=0.092 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHH--hCCCCCEEEEEEeccccccCCCCCCCCCC
Q 017524 103 NDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQ--GCQPGDSLLFHFSGHGSQQRNYNGEEVDG 180 (370)
Q Consensus 103 nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~--~a~~gD~l~fyfSGHG~~~~d~~gde~dG 180 (370)
+|+++|+++|+ .+||. |.+..| .|.++|.+.|+.+.+ +.+..|.++++|.+||..
T Consensus 54 ~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~dh~~~d~~v~~ilSHG~~----------- 110 (272)
T 3h11_A 54 NETELLRDTFT-SLGYE---VQKFLH--------LSMHGISQILGQFACMPEHRDYDSFVCVLVSRGGS----------- 110 (272)
T ss_dssp CCCSHHHHHHH-HHTEE---EEEEES--------CBHHHHHHHHHHHHTCGGGGGCSEEEEEEEEEEET-----------
T ss_pred HHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHHHhccccCCCCEEEEEEEcCCCC-----------
Confidence 69999999997 58996 666666 799999999999986 477899999999999984
Q ss_pred cceeEEcccCCCCCcccHHHHHHhhcCc-CC--CCCeEEEEEcCCCCCC-CCCcccccccccccccc--cccCCCCCCCc
Q 017524 181 YDETLCPVDFETQGMIVDDEINTTLVRP-LP--RGARLHAIIDACHSGT-VLDLPFLCRMDRQGKYI--WEDHRPRSGMW 254 (370)
Q Consensus 181 ~de~L~p~D~~~~g~I~ddeL~~~Lv~~-l~--~g~~l~~IlD~ChSG~-~~~~p~~~~~~r~g~~~--~~d~~~~~~~~ 254 (370)
.+|++.|.... .+.-++|.+.+... .+ .|.-.++||+||.... -.+.... ...++... .+......+..
T Consensus 111 --g~i~g~D~~~~-~v~l~~i~~~f~~~~CpsL~gKPKlffiQACRG~~~~~~~g~~--~~~D~~~~~~~~~~~~~~~~~ 185 (272)
T 3h11_A 111 --QSVYGVDQTHS-GLPLHHIRRMFMGDSCPYLAGKPKMFFIQNYVVSEGQLENSSL--LEVDGPAMKNVEFKAQKRGLC 185 (272)
T ss_dssp --TEECBTSCCSS-CEEHHHHHHHHSTTTCGGGTTSCEEEEEEEEEC---------------------------------
T ss_pred --CeEEEEcCCcc-eEeHHHHHHHhccccChhhcCCCcEEEEECCCCCCcccCCCcc--eeccCcccccccccccccccc
Confidence 17888885322 36667888777531 11 2333579999998532 1111000 01111100 00000000111
Q ss_pred cccCCCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Q 017524 255 KGTSGGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERGHGATYGSMLNSMRSTIRNT 319 (370)
Q Consensus 255 ~~~~~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL~~~~~~Ty~~Ll~~vr~~l~~~ 319 (370)
+-....++++..|+.++..|+... ..++.|..+|++.|++.......+||..|+..|.+.
T Consensus 186 ~iP~~aDfL~~yST~pg~~s~R~~-----~~GSwfIq~Lc~~l~~~~~~dl~~ilt~Vn~~V~~~ 245 (272)
T 3h11_A 186 TVHREADFFWSLCTADMSLLEQSH-----SSPSLYLQCLSQKLRQERKRPLLDLHIELNGYMYDW 245 (272)
T ss_dssp -CCTTCSEEEEEEEEEGGGTSSTT-----CCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEEeccCCeEEEEeC-----CCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 122356788888888888888665 357899999999999855678999999999999765
No 18
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=98.79 E-value=8.7e-08 Score=84.41 Aligned_cols=117 Identities=18% Similarity=0.213 Sum_probs=90.1
Q ss_pred CCceEEEEEEec-CCCC--CCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHH--hC
Q 017524 79 QGRKRALIVGVS-YRHT--NHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQ--GC 153 (370)
Q Consensus 79 ~~~k~ALlIGIn-Y~~~--~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~--~a 153 (370)
..+..||||.+. |... ..+..|+..|+++|+++|+ .+||. |.+..| .|.++|...|+.+.+ +-
T Consensus 31 ~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~~dh 98 (167)
T 1pyo_A 31 RPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFK-LLGYD---VHVLCD--------QTAQEMQEKLQNFAQLPAH 98 (167)
T ss_dssp SSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHH-HTTEE---EEEEES--------CCHHHHHHHHHHHHTCGGG
T ss_pred CCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHhhhhhhc
Confidence 458999999887 5432 3577899999999999997 58996 666665 799999999999987 44
Q ss_pred CCCCEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEcCCCC
Q 017524 154 QPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHS 224 (370)
Q Consensus 154 ~~gD~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~----~l~~g~~l~~IlD~ChS 224 (370)
+..|.++++|.+||.. .+|++.|.. .+.-++|...+.. .|. |.=.++||+||..
T Consensus 99 ~~~dc~vv~ilSHG~~-------------g~i~g~D~~---~v~l~~i~~~F~~~~CpsL~-gKPKlffiQACRG 156 (167)
T 1pyo_A 99 RVTDSCIVALLSHGVE-------------GAIYGVDGK---LLQLQEVFQLFDNANCPSLQ-NKPKMFFIQACRG 156 (167)
T ss_dssp GTSSEEEEEEESCEET-------------TEEECTTSC---EEEHHHHHHHTSTTTCGGGT-TSCEEEEEESCSS
T ss_pred cCCCEEEEEeCCCCCC-------------CeEEEeCCC---EEcHHHHHHHhcccCChhHc-CCCeEEEEECCCC
Confidence 6789999999999986 168888842 3666788777642 122 3335799999974
No 19
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=98.66 E-value=3.3e-07 Score=79.00 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=87.6
Q ss_pred CCceEEEEEEec-CCC--CCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhC-C
Q 017524 79 QGRKRALIVGVS-YRH--TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGC-Q 154 (370)
Q Consensus 79 ~~~k~ALlIGIn-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a-~ 154 (370)
..+..||||.+. |.. ...+..|+..|+++|+++|+ .+||. |.+..| .|.++|.+.|+.+.+.- +
T Consensus 14 ~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~~~~~dh~ 81 (146)
T 2dko_A 14 PEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFR-NLKYE---VRNKND--------LTREEIVELMRDVSKEDHS 81 (146)
T ss_dssp SEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHHSCCT
T ss_pred CCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHH-HCCCE---EEEeeC--------CCHHHHHHHHHHHHHhhcC
Confidence 356788888776 543 23567899999999999997 58997 666666 79999999999998753 5
Q ss_pred CCCEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcCc-CC--CCCeEEEEEcCCCC
Q 017524 155 PGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVRP-LP--RGARLHAIIDACHS 224 (370)
Q Consensus 155 ~gD~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~~-l~--~g~~l~~IlD~ChS 224 (370)
..|.+++++.+||.. | .|++.|. .+.-++|...+... -| .|.=.++||+||..
T Consensus 82 ~~dc~vv~ilSHG~~----------g---~i~g~D~----~~~l~~i~~~F~~~~CpsL~gKPKlffiQACRG 137 (146)
T 2dko_A 82 KRSSFVCVLLSHGEE----------G---IIFGTNG----PVDLKKITNFFRGDRCRSLTGKPKLFIIQACRG 137 (146)
T ss_dssp TEEEEEEEEESCEET----------T---EEEETTE----EEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCS
T ss_pred CCCeEEEEeccCCCC----------C---EEEEeCC----cEeHHHHHHHhccccChhhcCCCeEEEEECCCC
Confidence 669999999999984 1 7888884 46667777766311 11 23335799999974
No 20
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=98.56 E-value=9.2e-07 Score=77.62 Aligned_cols=117 Identities=18% Similarity=0.201 Sum_probs=88.4
Q ss_pred CCceEEEEEEec-CCC---------CCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHH
Q 017524 79 QGRKRALIVGVS-YRH---------TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYW 148 (370)
Q Consensus 79 ~~~k~ALlIGIn-Y~~---------~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~ 148 (370)
..+.+||||.+. |.. ...+..|+.+|+++|+++|. .+||. |.+..| .|.++|.+.|+.
T Consensus 21 ~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~-~LgF~---V~~~~d--------lt~~em~~~l~~ 88 (164)
T 1qtn_A 21 KPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFE-ELHFE---IKPHDD--------CTVEQIYEILKI 88 (164)
T ss_dssp SSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHH
T ss_pred CCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHH-HCCCE---EEEecC--------CCHHHHHHHHHH
Confidence 357899999876 442 24578899999999999997 58997 666655 799999999999
Q ss_pred HHHh-CCCCCEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEcCCC
Q 017524 149 LIQG-CQPGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACH 223 (370)
Q Consensus 149 L~~~-a~~gD~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~----~l~~g~~l~~IlD~Ch 223 (370)
+.+. -+..|.+++++.+||.. | .|+..|.. .+.-++|...+.. .| .|.=.++||.||.
T Consensus 89 ~~~~dh~~~dc~vv~ilSHG~~----------g---~i~g~D~~---~v~i~~i~~~F~~~~CpsL-~gKPKlFfiQACR 151 (164)
T 1qtn_A 89 YQLMDHSNMDCFICCILSHGDK----------G---IIYGTDGQ---EAPIYELTSQFTGLKCPSL-AGKPKVFFIQACQ 151 (164)
T ss_dssp HHHSCCTTCSCEEEEEESCEET----------T---EEECTTSC---EEEHHHHHGGGSTTTCGGG-TTSCEEEEEESCS
T ss_pred HHHhhccCCCEEEEEeCCCCCC----------C---EEEeeCCC---EeeHHHHHHHhccccChhh-cCCCeEEEEECCC
Confidence 9765 36789999999999985 1 68888842 3555777776632 12 2333579999997
Q ss_pred C
Q 017524 224 S 224 (370)
Q Consensus 224 S 224 (370)
.
T Consensus 152 G 152 (164)
T 1qtn_A 152 G 152 (164)
T ss_dssp S
T ss_pred C
Confidence 4
No 21
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=98.42 E-value=3.1e-06 Score=74.85 Aligned_cols=116 Identities=11% Similarity=0.123 Sum_probs=84.9
Q ss_pred CceEEEEEEec-CCC--CCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHh-CCC
Q 017524 80 GRKRALIVGVS-YRH--TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG-CQP 155 (370)
Q Consensus 80 ~~k~ALlIGIn-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~-a~~ 155 (370)
.+..||||.+. |.. ...+-.|+..|+++|+++|. .+||. |.+..| .|.++|...|+.+.+. -+.
T Consensus 43 ~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~-~LgF~---V~v~~d--------lt~~em~~~l~~~s~~dh~~ 110 (173)
T 2ql9_A 43 KLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFR-SLGFD---VIVYND--------CSCAKMQDLLKKASEEDHTN 110 (173)
T ss_dssp EEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHH-HHTEE---EEEEES--------CCHHHHHHHHHHHHTSCCTT
T ss_pred CceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHHHhhccC
Confidence 45677887765 432 13456799999999999997 58996 566655 7999999999998765 356
Q ss_pred CCEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcC-cCC--CCCeEEEEEcCCCC
Q 017524 156 GDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR-PLP--RGARLHAIIDACHS 224 (370)
Q Consensus 156 gD~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~-~l~--~g~~l~~IlD~ChS 224 (370)
.|.+++.+.+||.. | .|+..|. .+.-++|...+.. .-+ .|.=-++||.||..
T Consensus 111 ~dc~vvvilSHG~~----------g---~I~g~D~----~~~i~~I~~~F~~~~CpsL~gKPKlFfIQACRG 165 (173)
T 2ql9_A 111 AACFACILLSHGEE----------N---VIYGKDG----VTPIKDLTAHFRGDRCKTLLEKPKLFFIQACRG 165 (173)
T ss_dssp EEEEEEEEESCEET----------T---EEEETTE----EEEHHHHHGGGSTTTCGGGTTSCEEEEEESCCS
T ss_pred CCeEEEeecCCCCC----------C---EEEEcCC----cEEHHHHHHHcCcccChhHcCCCeEEEEECCCC
Confidence 79999999999975 1 6888873 4666777776531 111 23335799999974
No 22
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=98.36 E-value=7e-06 Score=72.88 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=86.3
Q ss_pred CCceEEEEEEec-CCC--CCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHh-CC
Q 017524 79 QGRKRALIVGVS-YRH--TNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG-CQ 154 (370)
Q Consensus 79 ~~~k~ALlIGIn-Y~~--~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~-a~ 154 (370)
..+.+||||.+. |.. ...+..|+..|+++|+++|+ .+||. |.+..| .|.++|...|+.+.+. -+
T Consensus 42 ~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~-~LGF~---V~~~~d--------lt~~em~~~l~~~~~~dh~ 109 (179)
T 3p45_A 42 RRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFS-DLGFE---VKCFND--------LKAEELLLKIHEVSTVSHA 109 (179)
T ss_dssp SBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHH-HTTCE---EEEEES--------CCHHHHHHHHHHHHTSCCT
T ss_pred CccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHH-HCCCE---EEEEeC--------CCHHHHHHHHHHHhhhhcC
Confidence 456789999886 442 35678899999999999997 58997 666665 7999999999998653 34
Q ss_pred CCCEEEEEEeccccccCCCCCCCCCCcceeEEcccCCCCCcccHHHHHHhhcC----cCCCCCeEEEEEcCCCC
Q 017524 155 PGDSLLFHFSGHGSQQRNYNGEEVDGYDETLCPVDFETQGMIVDDEINTTLVR----PLPRGARLHAIIDACHS 224 (370)
Q Consensus 155 ~gD~l~fyfSGHG~~~~d~~gde~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~----~l~~g~~l~~IlD~ChS 224 (370)
..|.+++.+..||.. | .|+..|. .+.-++|...+.. .| .|.=.++||.||..
T Consensus 110 ~~dc~vvvilSHG~~----------g---~I~g~D~----~v~l~~I~~~F~~~~CpsL-~gKPKlFfIQACRG 165 (179)
T 3p45_A 110 DADCFVCVFLSHGEG----------N---HIYAYDA----KIEIQTLTGLFKGDKCHSL-VGKPKIFIIQACRG 165 (179)
T ss_dssp TBSCEEEEEESCEET----------T---EEECSSS----EEEHHHHHGGGSGGGCGGG-TTSCEEEEEECC--
T ss_pred CCCEEEEEEeccCCC----------C---EEEEECC----EEEHHHHHHhcccccChhh-CCCCcEEEEECCCC
Confidence 669999999999984 1 6888873 3666788776642 12 23335799999984
No 23
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=93.06 E-value=0.39 Score=37.13 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=57.4
Q ss_pred CCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhh
Q 017524 259 GGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVT 337 (370)
Q Consensus 259 ~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL~~-~~~~Ty~~Ll~~vr~~l~~~~~~~~~~~~~~~~~~~~~ 337 (370)
..+.++.-|+.++-.|+-.. ..++.|-.+|++.|++ .+.....+|+..|+..+.+.+
T Consensus 8 ~aDfL~~yST~pG~~S~R~~-----~~GSwfIq~Lc~~l~~~~~~~dl~~il~~V~~~v~~~~----------------- 65 (88)
T 1sc3_B 8 EKDFIAFCSSTPDNVSWRHP-----TMGSVFIGRLIEHMQEYACSCDVEEIFRKVRFSFEQPD----------------- 65 (88)
T ss_dssp SCSEEEEESSCTTBCCCEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHTCSCC-----------------
T ss_pred CCCEEEEEeCCCCCEeeEcC-----CCCCHHHHHHHHHHHHhCCcCcHHHHHHHHHHHHhccC-----------------
Confidence 46788888899998888765 3578999999999987 445789999999988887532
Q ss_pred hhhcCCCCCCCCCCccccc-cCCccCCCC
Q 017524 338 MLLTGGSLSGGFRQEPQLT-ANEPFDVYT 365 (370)
Q Consensus 338 ~~~~~~~~~~~~~Q~Pqls-ss~~~d~~~ 365 (370)
+.+|.|... ++..=.+|.
T Consensus 66 ----------~~kQ~P~~~~stLtk~lyf 84 (88)
T 1sc3_B 66 ----------GRAQMPTTERVTLTRCFYL 84 (88)
T ss_dssp ----------SSCCCCEEESCCCCSBCCC
T ss_pred ----------CceEcCEeEcccceeEEEc
Confidence 247888875 666555553
No 24
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=92.60 E-value=0.43 Score=37.47 Aligned_cols=84 Identities=8% Similarity=0.030 Sum_probs=59.8
Q ss_pred CCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhh
Q 017524 259 GGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVT 337 (370)
Q Consensus 259 ~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL~~-~~~~Ty~~Ll~~vr~~l~~~~~~~~~~~~~~~~~~~~~ 337 (370)
..++++.-|+.++-.|+-.. ..++.|-.+|++.|++ ++.....+|+..|++.|.....+. ..+.
T Consensus 10 ~aDfL~~yST~pG~~S~R~~-----~~GSwfIq~Lc~~l~~~~~~~dl~~ilt~Vn~~V~~~~~~~----~~~~------ 74 (97)
T 2ql9_B 10 EADFLFAYSTVPGYYSWRSP-----GRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQ----SDDP------ 74 (97)
T ss_dssp TTTEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCC----CSSG------
T ss_pred CCCEEEEEeCCCCcEeeecC-----CCCCeeHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhccc----cCCc------
Confidence 46788888899999887654 3578999999999987 455889999999999998763100 0000
Q ss_pred hhhcCCCCCCCCCCccccccCCccCCC
Q 017524 338 MLLTGGSLSGGFRQEPQLTANEPFDVY 364 (370)
Q Consensus 338 ~~~~~~~~~~~~~Q~Pqlsss~~~d~~ 364 (370)
. ..+..|.|...++..=.+|
T Consensus 75 ------~-~~~~kQ~P~~~stLtk~ly 94 (97)
T 2ql9_B 75 ------H-FHEKKQIPCVVSMLTKELY 94 (97)
T ss_dssp ------G-GTTCBCCCEEEECCSSBCC
T ss_pred ------c-cCCceEeeeeEEEEceeEE
Confidence 0 0135899998877655554
No 25
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=92.54 E-value=0.43 Score=37.99 Aligned_cols=85 Identities=8% Similarity=0.006 Sum_probs=60.9
Q ss_pred CCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhh
Q 017524 259 GGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVT 337 (370)
Q Consensus 259 ~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL~~-~~~~Ty~~Ll~~vr~~l~~~~~~~~~~~~~~~~~~~~~ 337 (370)
..++++.-|+.++-.|+-.. ..++.|-.+|++.|++ ++.....+|+..|++.|.....+. +...
T Consensus 16 ~aDfL~~yST~pG~vS~R~~-----~~GSwfIq~Lc~~l~~~~~~~dl~~ilT~Vn~~V~~~~~~~-----~~~~----- 80 (103)
T 2dko_B 16 EADFLYAYSTAPGYYSWRNS-----KDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATEFESF-----SFDA----- 80 (103)
T ss_dssp TTTEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCCC-----CSSG-----
T ss_pred CCCEEEEEeCCCCcEeEEcC-----CCCCeeHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhccc-----CCCC-----
Confidence 46788888999999998655 3578999999999987 455889999999999998763100 0000
Q ss_pred hhhcCCCCCCCCCCccccccCCccCCCC
Q 017524 338 MLLTGGSLSGGFRQEPQLTANEPFDVYT 365 (370)
Q Consensus 338 ~~~~~~~~~~~~~Q~Pqlsss~~~d~~~ 365 (370)
. ..+.+|.|...++..=.+|.
T Consensus 81 ------~-~~~~kQ~P~~~stLtK~lyf 101 (103)
T 2dko_B 81 ------T-FHAKKQIPCIVSMLTKELYF 101 (103)
T ss_dssp ------G-GTTCBCCCEEEECCSSBCCS
T ss_pred ------c-cCCceEeeeeEEEEceeEEe
Confidence 0 01358999988876555543
No 26
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=91.98 E-value=0.53 Score=38.52 Aligned_cols=56 Identities=7% Similarity=0.051 Sum_probs=47.0
Q ss_pred CCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcc
Q 017524 259 GGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATYGSMLNSMRSTIRNT 319 (370)
Q Consensus 259 ~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL~~-~~~~Ty~~Ll~~vr~~l~~~ 319 (370)
..++++.-|+.++-.|+-.. ..++.|-.+|++.|++ .......+|+..|++.|...
T Consensus 15 ~aDfLi~yST~pG~vS~R~~-----~~GSwFIQ~Lc~vl~~~~~~~dl~~ilT~Vn~~Va~~ 71 (118)
T 2xzd_B 15 EADFLYAYSTAPGYYSWRNS-----KDGSWFIQSLCAMLKQYADKLEFMHILTRVNRKVATE 71 (118)
T ss_dssp TTTEEEEESSCTTBCCCEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCEeeEeC-----CCCCccHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence 46788888899999888655 3578999999999987 45588999999999999876
No 27
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=91.75 E-value=0.059 Score=40.31 Aligned_cols=34 Identities=26% Similarity=0.715 Sum_probs=31.6
Q ss_pred CCCcccCCCCCCccccCCCCceeeccccCceeeccC
Q 017524 1 MLMLVDCSKCRTTLQLPPGAQSIRCAICQAITHIAD 36 (370)
Q Consensus 1 ~~~~~~C~~C~~~l~~p~~a~~~~C~~C~~vt~v~~ 36 (370)
||..++|+ |++.+-+..++.+.+|. |.++-++..
T Consensus 1 mY~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k 34 (71)
T 1gh9_A 1 MYIIFRCD-CGRALYSREGAKTRKCV-CGRTVNVKD 34 (71)
T ss_dssp CEEEEEET-TSCCEEEETTCSEEEET-TTEEEECCS
T ss_pred CeEEEECC-CCCEEEEcCCCcEEECC-CCCeeeece
Confidence 88999999 99999999999999998 999998875
No 28
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=91.54 E-value=0.92 Score=36.13 Aligned_cols=84 Identities=11% Similarity=0.138 Sum_probs=60.1
Q ss_pred CCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhh
Q 017524 259 GGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGATYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLVT 337 (370)
Q Consensus 259 ~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL~~-~~~~Ty~~Ll~~vr~~l~~~~~~~~~~~~~~~~~~~~~ 337 (370)
..++++.-|+.++-.|+-.. ..++.|-.+|++.|++ .......+|+..|++.|.... .. ..+.
T Consensus 14 ~aDfL~~yST~pG~~S~R~~-----~~GSwFIq~Lc~~l~~~~~~~dl~~ilt~Vn~~V~~~~--~~---~~~~------ 77 (105)
T 1pyo_B 14 RSDMICGYACLKGTAAMRNT-----KRGSWYIEALAQVFSERACDMHVADMLVKVNALIKDRE--GY---APGT------ 77 (105)
T ss_dssp SCSEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHTCC--CC---CTTS------
T ss_pred CCCEEEEEeCCCCcEEEecC-----CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhh--cc---CCCc------
Confidence 56788888888998887554 2578999999999997 456889999999999998754 11 0000
Q ss_pred hhhcCCCCCCCCCCccccccCCccCCCC
Q 017524 338 MLLTGGSLSGGFRQEPQLTANEPFDVYT 365 (370)
Q Consensus 338 ~~~~~~~~~~~~~Q~Pqlsss~~~d~~~ 365 (370)
.+ .+..|.|+..++..=.+|.
T Consensus 78 ------~~-~~~kQ~P~~~stLtK~lyf 98 (105)
T 1pyo_B 78 ------EF-HRCKEMSEYCSTLCRHLYL 98 (105)
T ss_dssp ------TT-TTCBCCCEEEECCCSBCCC
T ss_pred ------cc-cCceECCEeEEeeceeEEe
Confidence 00 1247999888776555543
No 29
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=90.34 E-value=0.89 Score=35.54 Aligned_cols=78 Identities=14% Similarity=0.044 Sum_probs=58.4
Q ss_pred CCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHHhc-CCCC-CHHHHHHHHHHHHhccCCCCCCCCCCCcchhhh
Q 017524 259 GGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIER-GHGA-TYGSMLNSMRSTIRNTDSGSELSGAGGLVTSLV 336 (370)
Q Consensus 259 ~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL~~-~~~~-Ty~~Ll~~vr~~l~~~~~~~~~~~~~~~~~~~~ 336 (370)
..++++.-|+.++-.|+-.. ..++.|-.+|++.|++ ++.. ...+|+..|++.|..... .
T Consensus 12 ~aDfL~~ysT~pG~~S~R~~-----~~GSwfIq~Lc~~l~~~~~~~~dl~~ilt~Vn~~V~~~~~--~------------ 72 (95)
T 1qtn_B 12 EADFLLGMATVNNCVSYRNP-----AEGTWYIQSLCQSLRERCPRGDDILTILTEVNYEVSNKDD--K------------ 72 (95)
T ss_dssp TCSEEEEESSCTTBCCEEET-----TTEEHHHHHHHHHHHHHGGGTCCHHHHHHHHHHHHHHCCB--T------------
T ss_pred CCCEEEEEeCCCCcEEEecC-----CCCcHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHhhc--c------------
Confidence 46788888888998887544 2578999999999987 3345 899999999999987641 0
Q ss_pred hhhhcCCCCCCCCCCccccccCCccCCC
Q 017524 337 TMLLTGGSLSGGFRQEPQLTANEPFDVY 364 (370)
Q Consensus 337 ~~~~~~~~~~~~~~Q~Pqlsss~~~d~~ 364 (370)
..+.+|.|...++..=.+|
T Consensus 73 ---------~~~~kQ~P~~~stLtK~ly 91 (95)
T 1qtn_B 73 ---------KNMGKQMPQPTFTLRKKLV 91 (95)
T ss_dssp ---------TTTBBCCCEEEECCCSBCC
T ss_pred ---------CCCceEeeeeEEEEcceEe
Confidence 0235799998877654444
No 30
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=85.68 E-value=3.6 Score=33.40 Aligned_cols=57 Identities=11% Similarity=0.147 Sum_probs=47.4
Q ss_pred CCCEEEEEecCCCCccccccccCCCCCCChhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhccC
Q 017524 259 GGEAISFSGCDDNQTSADTSALSKITSTGAMTYSFIQAIERG-HGATYGSMLNSMRSTIRNTD 320 (370)
Q Consensus 259 ~~~~i~~Sac~~~Q~A~d~~~~~~~~~~G~fT~ali~aL~~~-~~~Ty~~Ll~~vr~~l~~~~ 320 (370)
..++++.-|+.++-.|+-.. ..++.|-.+|++.|++. ......+|+..|.+.|.+..
T Consensus 15 eADfL~~yST~pGyvS~R~~-----~~GSwFIQ~Lc~vl~~~~~~~dLl~ilT~Vn~~Va~~~ 72 (117)
T 3rjm_B 15 RSDMICGYACLKGTAAMRNT-----KRGSWYIEALAQVFSERACDMHVADMLVKVNALIKDRE 72 (117)
T ss_dssp SCSEEEEESSCTTCCCEEET-----TTEEHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCC
T ss_pred ccCEEEEEcCCCCeECeeec-----CCCChHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence 46788888999999998655 35689999999999873 45789999999999999653
No 31
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=71.43 E-value=2 Score=31.33 Aligned_cols=30 Identities=20% Similarity=0.612 Sum_probs=25.2
Q ss_pred CcccCCCCCC-ccccCCCCceeeccccCcee
Q 017524 3 MLVDCSKCRT-TLQLPPGAQSIRCAICQAIT 32 (370)
Q Consensus 3 ~~~~C~~C~~-~l~~p~~a~~~~C~~C~~vt 32 (370)
+-|.|++|.. ...+..-.+.|.|..|..+-
T Consensus 6 m~VKCp~C~niq~VFShA~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDHPSTIVKCIICGRTV 36 (66)
T ss_dssp EEEECTTTCCEEEEESSCSSCEECSSSCCEE
T ss_pred EEEECCCCCCceEEEecCceEEEcccCCCEE
Confidence 6789999998 46888888899999998654
No 32
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=68.86 E-value=2.9 Score=29.86 Aligned_cols=35 Identities=29% Similarity=0.465 Sum_probs=28.1
Q ss_pred CCcccCCC--CCCcc----ccCCCCceeeccccCceeeccC
Q 017524 2 LMLVDCSK--CRTTL----QLPPGAQSIRCAICQAITHIAD 36 (370)
Q Consensus 2 ~~~~~C~~--C~~~l----~~p~~a~~~~C~~C~~vt~v~~ 36 (370)
+..++|.+ |++.| .+-.+.+..+|.+|...+.+..
T Consensus 7 ~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~ 47 (59)
T 2yrc_A 7 GEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPP 47 (59)
T ss_dssp CCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCS
T ss_pred CCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCH
Confidence 45789998 99975 4445678899999999888864
No 33
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=67.78 E-value=2.7 Score=30.43 Aligned_cols=30 Identities=30% Similarity=0.692 Sum_probs=24.1
Q ss_pred CcccCCCCCC-ccccCCCCceeeccccCcee
Q 017524 3 MLVDCSKCRT-TLQLPPGAQSIRCAICQAIT 32 (370)
Q Consensus 3 ~~~~C~~C~~-~l~~p~~a~~~~C~~C~~vt 32 (370)
|.|.|++|.. ...+..-.+.|.|..|..+-
T Consensus 14 m~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L 44 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHPATKVRCLICGATL 44 (63)
T ss_dssp EEEECSSSCCEEEEESSCSSCEECSSSCCEE
T ss_pred EEEECCCCCCeeEEEecCCeEEEccCcCCEE
Confidence 5688999988 46788888889999998553
No 34
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=64.68 E-value=3.2 Score=31.49 Aligned_cols=30 Identities=30% Similarity=0.711 Sum_probs=24.3
Q ss_pred CcccCCCCCC-ccccCCCCceeeccccCcee
Q 017524 3 MLVDCSKCRT-TLQLPPGAQSIRCAICQAIT 32 (370)
Q Consensus 3 ~~~~C~~C~~-~l~~p~~a~~~~C~~C~~vt 32 (370)
|-|.|++|.. ...+..-.+.|.|..|..+-
T Consensus 31 m~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L 61 (81)
T 2xzm_6 31 MDVKCAQCQNIQMIFSNAQSTIICEKCSAIL 61 (81)
T ss_dssp EEEECSSSCCEEEEETTCSSCEECSSSCCEE
T ss_pred EEeECCCCCCeeEEEecCccEEEccCCCCEE
Confidence 5688999988 46778888889999998663
No 35
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=64.01 E-value=18 Score=34.00 Aligned_cols=60 Identities=12% Similarity=0.134 Sum_probs=34.8
Q ss_pred chHHHHHHHHHHHHhccC--CCCCceEEe-ccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEE---EEeccc
Q 017524 100 GCINDARCMKYMLTNRFK--FPESSIVML-TEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLF---HFSGHG 167 (370)
Q Consensus 100 g~~nDa~~m~~~L~~~~G--f~~~~I~~L-td~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~f---yfSGHG 167 (370)
|...=-+.+++++..++| +++++|.++ |.. ..+.+..++.-|..-.++||.+++ .|.+|-
T Consensus 72 g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G--------~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~ 137 (401)
T 7aat_A 72 GLADFTRASAELALGENSEAFKSGRYVTVQGIS--------GTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHT 137 (401)
T ss_dssp CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH--------HHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHH
T ss_pred CCHHHHHHHHHHhcCCCccccccCceEEEecCc--------chHHHHHHHHHHHHhccCCCEEEEcCCCchhHH
Confidence 433444557777765556 346777653 442 344555555555544579999998 455443
No 36
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=54.17 E-value=8.5 Score=28.17 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=30.6
Q ss_pred CCcccCCCCCCccccCCCCceeeccccCceeeccC
Q 017524 2 LMLVDCSKCRTTLQLPPGAQSIRCAICQAITHIAD 36 (370)
Q Consensus 2 ~~~~~C~~C~~~l~~p~~a~~~~C~~C~~vt~v~~ 36 (370)
...+.|+.|+..|.+-.......|..|+..-.|+.
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (68)
T 2jr6_A 6 LDILVCPVTKGRLEYHQDKQELWSRQAKLAYPIKD 40 (68)
T ss_dssp SCCCBCSSSCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred hhheECCCCCCcCeEeCCCCEEEcCCCCcEecCCC
Confidence 46788999999999988888899999998888874
No 37
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=53.80 E-value=4.7 Score=30.67 Aligned_cols=29 Identities=21% Similarity=0.592 Sum_probs=20.2
Q ss_pred CcccCCCCCCc-cccCCCCceeeccccCce
Q 017524 3 MLVDCSKCRTT-LQLPPGAQSIRCAICQAI 31 (370)
Q Consensus 3 ~~~~C~~C~~~-l~~p~~a~~~~C~~C~~v 31 (370)
|.|.|.+|... ..+..-.+.|.|..|..+
T Consensus 33 m~VkCp~C~~~q~VFSha~t~V~C~~Cg~~ 62 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSHAQTAVTCESCSTI 62 (82)
T ss_dssp EEEECTTSCSCEEEESBCSSCCCCSSSCCC
T ss_pred EEEECCCCCCeeEEEecCCeEEEccccCCE
Confidence 45678888773 566677777888888644
No 38
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=53.46 E-value=8.9 Score=27.44 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=21.5
Q ss_pred CcccCCCCCCccccCCCCceeeccccCceeeccC
Q 017524 3 MLVDCSKCRTTLQLPPGAQSIRCAICQAITHIAD 36 (370)
Q Consensus 3 ~~~~C~~C~~~l~~p~~a~~~~C~~C~~vt~v~~ 36 (370)
....|..|+++=. .-.|..|...|.+.-
T Consensus 5 ~mr~C~~CgvYTL------k~~CP~CG~~T~~~h 32 (60)
T 2apo_B 5 RMKKCPKCGLYTL------KEICPKCGEKTVIPK 32 (60)
T ss_dssp CCEECTTTCCEES------SSBCSSSCSBCBCCC
T ss_pred hceeCCCCCCEec------cccCcCCCCcCCCCC
Confidence 3567999998633 556999999988874
No 39
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=53.36 E-value=9 Score=28.19 Aligned_cols=35 Identities=17% Similarity=0.421 Sum_probs=30.7
Q ss_pred CCcccCCCCCCccccCCCCceeeccccCceeeccC
Q 017524 2 LMLVDCSKCRTTLQLPPGAQSIRCAICQAITHIAD 36 (370)
Q Consensus 2 ~~~~~C~~C~~~l~~p~~a~~~~C~~C~~vt~v~~ 36 (370)
...+.|+.|+..|.+-.......|..|+..-.|..
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (70)
T 2js4_A 6 LDILVCPVCKGRLEFQRAQAELVCNADRLAFPVRD 40 (70)
T ss_dssp CCCCBCTTTCCBEEEETTTTEEEETTTTEEEEEET
T ss_pred hhheECCCCCCcCEEeCCCCEEEcCCCCceecCCC
Confidence 46788999999999988888899999998888874
No 40
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=53.07 E-value=8.4 Score=28.29 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=30.4
Q ss_pred CCcccCCCCCCccccCCCCceeeccccCceeeccC
Q 017524 2 LMLVDCSKCRTTLQLPPGAQSIRCAICQAITHIAD 36 (370)
Q Consensus 2 ~~~~~C~~C~~~l~~p~~a~~~~C~~C~~vt~v~~ 36 (370)
...+.|+.|+..|.+-.......|..|+..-.|..
T Consensus 6 LeiL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (69)
T 2pk7_A 6 LDILACPICKGPLKLSADKTELISKGAGLAYPIRD 40 (69)
T ss_dssp GGTCCCTTTCCCCEECTTSSEEEETTTTEEEEEET
T ss_pred HhheeCCCCCCcCeEeCCCCEEEcCCCCcEecCcC
Confidence 35678999999999988888899999998888874
No 41
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=53.02 E-value=7.1 Score=26.33 Aligned_cols=29 Identities=28% Similarity=0.575 Sum_probs=24.9
Q ss_pred cccCCCCCC-ccccCCCCceeeccccCcee
Q 017524 4 LVDCSKCRT-TLQLPPGAQSIRCAICQAIT 32 (370)
Q Consensus 4 ~~~C~~C~~-~l~~p~~a~~~~C~~C~~vt 32 (370)
.+.|+.|+. .|.+-+......|..|..|-
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 567999998 89998888899999998654
No 42
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=52.40 E-value=5.5 Score=30.53 Aligned_cols=29 Identities=28% Similarity=0.576 Sum_probs=20.4
Q ss_pred CcccCCCCCC-ccccCCCCceeeccccCce
Q 017524 3 MLVDCSKCRT-TLQLPPGAQSIRCAICQAI 31 (370)
Q Consensus 3 ~~~~C~~C~~-~l~~p~~a~~~~C~~C~~v 31 (370)
+.|.|++|.. ...+..-.+.|.|..|..+
T Consensus 35 m~VkCp~C~~~~~VFShA~t~V~C~~Cgtv 64 (86)
T 3iz6_X 35 MDVKCQGCFNITTVFSHSQTVVVCPGCQTV 64 (86)
T ss_dssp EEEECTTTCCEEEEETTCSSCCCCSSSCCC
T ss_pred eEEECCCCCCeeEEEecCCcEEEccCCCCE
Confidence 4577888877 3566777777888888643
No 43
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=52.31 E-value=5.8 Score=42.33 Aligned_cols=34 Identities=21% Similarity=0.699 Sum_probs=27.9
Q ss_pred CcccCCCCCCcc----ccCCCCceeeccccCceeeccC
Q 017524 3 MLVDCSKCRTTL----QLPPGAQSIRCAICQAITHIAD 36 (370)
Q Consensus 3 ~~~~C~~C~~~l----~~p~~a~~~~C~~C~~vt~v~~ 36 (370)
..++|.+||+++ .+-.+.+..+|..|...+.+..
T Consensus 97 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~ 134 (770)
T 3efo_B 97 GPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPP 134 (770)
T ss_dssp CSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCG
T ss_pred CCCccCCCCCCcCCceEEecCCCEEEeccccccCCCch
Confidence 358999999975 4445678999999999999875
No 44
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=51.27 E-value=10 Score=28.68 Aligned_cols=32 Identities=13% Similarity=0.385 Sum_probs=26.0
Q ss_pred cccCCCCCCccccCCCCceeeccccCceeecc
Q 017524 4 LVDCSKCRTTLQLPPGAQSIRCAICQAITHIA 35 (370)
Q Consensus 4 ~~~C~~C~~~l~~p~~a~~~~C~~C~~vt~v~ 35 (370)
.+.|++|...+...++...++|..|+...=+.
T Consensus 25 ~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~ 56 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVR 56 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEECSS
T ss_pred EeECcCCCchheecCCCCceEeCCCCCccccc
Confidence 34699999988888888889999999877553
No 45
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=51.03 E-value=7.2 Score=26.75 Aligned_cols=27 Identities=15% Similarity=0.427 Sum_probs=21.0
Q ss_pred ccCCCCCCccccCCCCceeeccccCce
Q 017524 5 VDCSKCRTTLQLPPGAQSIRCAICQAI 31 (370)
Q Consensus 5 ~~C~~C~~~l~~p~~a~~~~C~~C~~v 31 (370)
-.|+.|+..+.+.+......|..|..+
T Consensus 20 k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 20 KFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp EECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred ccCCCCCCceEEecCCCeEECCCCCCE
Confidence 359999997655556678999999865
No 46
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=50.95 E-value=7.9 Score=28.33 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=30.3
Q ss_pred CCcccCCCCCCccccCCCCceeeccccCceeeccC
Q 017524 2 LMLVDCSKCRTTLQLPPGAQSIRCAICQAITHIAD 36 (370)
Q Consensus 2 ~~~~~C~~C~~~l~~p~~a~~~~C~~C~~vt~v~~ 36 (370)
...+.|+.|+..|.+-.......|..|+..-.|+.
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (68)
T 2hf1_A 6 LEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKD 40 (68)
T ss_dssp EEECBCTTTCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred hhheECCCCCCcCeEeCCCCEEEcCCCCcEecCCC
Confidence 35678999999999988888899999998888874
No 47
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=50.57 E-value=6.5 Score=41.94 Aligned_cols=35 Identities=20% Similarity=0.682 Sum_probs=28.1
Q ss_pred CcccCCCCCCcc----ccCCCCceeeccccCceeeccCC
Q 017524 3 MLVDCSKCRTTL----QLPPGAQSIRCAICQAITHIADP 37 (370)
Q Consensus 3 ~~~~C~~C~~~l----~~p~~a~~~~C~~C~~vt~v~~~ 37 (370)
..++|.+||+++ .+-.+.+..+|..|...+.+...
T Consensus 93 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~ 131 (766)
T 3eh2_A 93 GPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQ 131 (766)
T ss_dssp CCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTT
T ss_pred CCCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHH
Confidence 358999999975 33456789999999999998753
No 48
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=48.45 E-value=8.1 Score=26.23 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=20.6
Q ss_pred cccCCCCCCccccCC--CCceeeccccCc--eeecc
Q 017524 4 LVDCSKCRTTLQLPP--GAQSIRCAICQA--ITHIA 35 (370)
Q Consensus 4 ~~~C~~C~~~l~~p~--~a~~~~C~~C~~--vt~v~ 35 (370)
.-.|..|++.+...- --+.|||.+|.. +++|+
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii~KvR 38 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVR 38 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECCC
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccCcEEEEEec
Confidence 346999998764432 236799999975 44555
No 49
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=48.27 E-value=9.2 Score=40.66 Aligned_cols=32 Identities=22% Similarity=0.732 Sum_probs=26.1
Q ss_pred cccCCCCCCcc----ccCCCCceeeccccCceeeccC
Q 017524 4 LVDCSKCRTTL----QLPPGAQSIRCAICQAITHIAD 36 (370)
Q Consensus 4 ~~~C~~C~~~l----~~p~~a~~~~C~~C~~vt~v~~ 36 (370)
.++|.+||+++ ++..+ +..+|..|...+.+..
T Consensus 85 p~RC~rCrayiNPf~~f~~~-~~w~Cn~C~~~N~~P~ 120 (751)
T 3eh1_A 85 IVRCRSCRTYINPFVSFIDQ-RRWKCNLCYRVNDVPE 120 (751)
T ss_dssp CCBCTTTCCBCCTTCEESSS-SEEECTTTCCEEECCG
T ss_pred CCcccCccCEeCCceEEecC-CEEEcccccCCCCCCH
Confidence 58999999975 44344 8999999999998874
No 50
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genom structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli}
Probab=48.27 E-value=35 Score=31.40 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHH
Q 017524 101 CINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQ 151 (370)
Q Consensus 101 ~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~ 151 (370)
....|+.|+++|.+.+|++.+.|.+-.... =|.+|+....++|-+
T Consensus 95 ~~sEA~~m~~~l~~~~GVp~~~IllE~~S~------nT~ENa~~s~~ll~~ 139 (266)
T 3ca8_A 95 GRAEATILADIAHQFWHIPHEKIWIEDQST------NCGENARFSIALLNQ 139 (266)
T ss_dssp TSCHHHHHHHHHHHTTCCCGGGEEEECCCC------SHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcCCCHHHEEeCCCCc------cHHHHHHHHHHHHHh
Confidence 357889999999876699998875433322 499999998776653
No 51
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=47.57 E-value=9 Score=27.68 Aligned_cols=28 Identities=21% Similarity=0.541 Sum_probs=21.5
Q ss_pred cccCCCCCCccccCCCCceeeccccCcee
Q 017524 4 LVDCSKCRTTLQLPPGAQSIRCAICQAIT 32 (370)
Q Consensus 4 ~~~C~~C~~~l~~p~~a~~~~C~~C~~vt 32 (370)
.-.|..|++...+..+ ..|||..|..-.
T Consensus 21 ~Y~C~~Cg~~~~l~~~-~~iRC~~CG~RI 48 (63)
T 3h0g_L 21 IYLCADCGARNTIQAK-EVIRCRECGHRV 48 (63)
T ss_dssp CCBCSSSCCBCCCCSS-SCCCCSSSCCCC
T ss_pred EEECCCCCCeeecCCC-CceECCCCCcEE
Confidence 4469999998887754 569999997543
No 52
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=46.10 E-value=9.7 Score=40.84 Aligned_cols=33 Identities=21% Similarity=0.663 Sum_probs=27.9
Q ss_pred cccCCCCCCcc----ccCCCCceeeccccCceeeccC
Q 017524 4 LVDCSKCRTTL----QLPPGAQSIRCAICQAITHIAD 36 (370)
Q Consensus 4 ~~~C~~C~~~l----~~p~~a~~~~C~~C~~vt~v~~ 36 (370)
.++|.+|++++ .+-.+.+..+|..|...+.+..
T Consensus 112 pvRC~~CrayiNPf~~~~~~g~~W~C~~C~~~N~~P~ 148 (810)
T 1pcx_A 112 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 148 (810)
T ss_dssp CCBCTTTCCBCCTTCEEETTTTEEECTTTCCEEECCG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCcCCCch
Confidence 58999999975 5567788999999999998864
No 53
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=45.79 E-value=9.7 Score=41.49 Aligned_cols=33 Identities=21% Similarity=0.663 Sum_probs=27.9
Q ss_pred cccCCCCCCcc----ccCCCCceeeccccCceeeccC
Q 017524 4 LVDCSKCRTTL----QLPPGAQSIRCAICQAITHIAD 36 (370)
Q Consensus 4 ~~~C~~C~~~l----~~p~~a~~~~C~~C~~vt~v~~ 36 (370)
.++|.+|++++ .+-.+.+..+|..|...+.+..
T Consensus 228 pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~N~~P~ 264 (926)
T 1m2v_B 228 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 264 (926)
T ss_dssp CCBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECCG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCCCCCch
Confidence 58999999975 5567788999999999998864
No 54
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=44.00 E-value=14 Score=30.05 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=27.5
Q ss_pred CCCcccCCCCCCccccC----CCCceeeccccCceeecc
Q 017524 1 MLMLVDCSKCRTTLQLP----PGAQSIRCAICQAITHIA 35 (370)
Q Consensus 1 ~~~~~~C~~C~~~l~~p----~~a~~~~C~~C~~vt~v~ 35 (370)
|++..-|+.|+..|.++ .+...+.|..|.+...+.
T Consensus 1 ~~~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 1 MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CCCCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred CCCCCcccccCccCcccccCcCCCCEEECCcCCCeeecC
Confidence 67788899999977666 335679999999877654
No 55
>1cvr_A Gingipain R, RGPB; caspases, cysteine proteinase, hydrolase-hydrolase inhibitor; HET: H37; 2.00A {Porphyromonas gingivalis} SCOP: b.1.18.12 c.17.1.2
Probab=42.82 E-value=73 Score=31.42 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=41.6
Q ss_pred CceEEEEEEec-CCCCCCCCcchHHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCE
Q 017524 80 GRKRALIVGVS-YRHTNHELKGCINDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDS 158 (370)
Q Consensus 80 ~~k~ALlIGIn-Y~~~~~~L~g~~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~ 158 (370)
=++++++|+=+ .......-.--..+.+.+++.+.. ++|- +|..+.+.+ +++++|.++|. ++ .
T Consensus 141 Wr~~~l~ia~~~~~~~~d~G~~~~~~~~~~~~~~~~-~~~~--~v~k~ydp~------~~~~~I~~~ln---~G-----~ 203 (435)
T 1cvr_A 141 WLGQALCIASAEGGPSADNGESDIQHENVIANLLTQ-YGYT--KIIKCYDPG------VTPKNIIDAFN---GG-----I 203 (435)
T ss_dssp TTTEEEEEECSCBCTTSGGGCBHHHHHHHHHHHHHH-HTCS--EEEEEESSS------CCHHHHHHHHH---HC-----C
T ss_pred hhceEEEEecCCCCcccccchhhhhHHHHHHhhhhc-CCcc--eeEEecCCc------cCHHHHHHHHh---CC-----C
Confidence 47899999843 111111001224556667776653 4442 344444533 56677776654 33 3
Q ss_pred EEEEEecccccc
Q 017524 159 LLFHFSGHGSQQ 170 (370)
Q Consensus 159 l~fyfSGHG~~~ 170 (370)
+++.|.|||...
T Consensus 204 ~ivnY~GHG~~~ 215 (435)
T 1cvr_A 204 SLVNYTGHGSET 215 (435)
T ss_dssp SEEEEESCBCSS
T ss_pred eEEEEecCCCcc
Confidence 688888999764
No 56
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=41.32 E-value=16 Score=26.63 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=30.0
Q ss_pred CCcccCCCCCCccccCCCCceeeccccCceeeccC
Q 017524 2 LMLVDCSKCRTTLQLPPGAQSIRCAICQAITHIAD 36 (370)
Q Consensus 2 ~~~~~C~~C~~~l~~p~~a~~~~C~~C~~vt~v~~ 36 (370)
...+.|+.|+..|.+-.......|..|+..=.|+.
T Consensus 8 LeiL~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~d 42 (67)
T 2jny_A 8 LEVLACPKDKGPLRYLESEQLLVNERLNLAYRIDD 42 (67)
T ss_dssp TCCCBCTTTCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred HHHhCCCCCCCcCeEeCCCCEEEcCCCCccccCCC
Confidence 35678999999999988888899999998888874
No 57
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=38.65 E-value=9 Score=29.19 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=24.7
Q ss_pred cccCCCCCCccccCCCCceeeccccCce
Q 017524 4 LVDCSKCRTTLQLPPGAQSIRCAICQAI 31 (370)
Q Consensus 4 ~~~C~~C~~~l~~p~~a~~~~C~~C~~v 31 (370)
.-.|+.|+..++.-+++...+|..|..+
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCE
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCE
Confidence 4469999999999999999999999854
No 58
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=36.73 E-value=1.3e+02 Score=27.82 Aligned_cols=58 Identities=3% Similarity=-0.034 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 017524 102 INDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (370)
Q Consensus 102 ~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~ 168 (370)
..-...+++.|.+.+|.++++|.+ +.. +.++|..++..|....++||.|++---.|..
T Consensus 68 ~~~~~~l~~~la~~~g~~~~~v~~-~~g--------~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~ 125 (406)
T 3cai_A 68 AAVLDAAREAVADLVNADPGGVVL-GAD--------RAVLLSLLAEASSSRAGLGYEVIVSRLDDEA 125 (406)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEE-ESC--------HHHHHHHHHHHTGGGGBTTCEEEEETTSCGG
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEE-eCC--------hHHHHHHHHHHHhhccCCCCEEEEcCCccHH
Confidence 345677888888778887777755 432 3356665555554346789988875445543
No 59
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=36.20 E-value=23 Score=24.82 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=24.4
Q ss_pred CCcccCCCCCC-ccccCCCCceeeccccCcee
Q 017524 2 LMLVDCSKCRT-TLQLPPGAQSIRCAICQAIT 32 (370)
Q Consensus 2 ~~~~~C~~C~~-~l~~p~~a~~~~C~~C~~vt 32 (370)
...+.|+.|+. .|.+-.....+.|..|..|-
T Consensus 9 l~~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 9 LPRVTCPNHPDAILVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CSCCSBTTBSSSCCEECSSSCCEECTTTCCEE
T ss_pred cccccCcCCCCCceeEeCCCCeEEeCCCCCEE
Confidence 34567999987 67777777789999998775
No 60
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=36.14 E-value=48 Score=30.21 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHH-hCCCCCEEEEE
Q 017524 102 INDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQ-GCQPGDSLLFH 162 (370)
Q Consensus 102 ~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~-~a~~gD~l~fy 162 (370)
..-.+.+++.|.+.+|.++++|.+ +.. ..+.+..++..+.. ..++||.|++-
T Consensus 42 ~~~~~~~~~~la~~~~~~~~~i~~-~~g--------~~~a~~~~~~~~~~~~~~~gd~vi~~ 94 (382)
T 4hvk_A 42 REAVQEAREKVAKLVNGGGGTVVF-TSG--------ATEANNLAIIGYAMRNARKGKHILVS 94 (382)
T ss_dssp HHHHHHHHHHHHHHTTCTTEEEEE-ESS--------HHHHHHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcCeEEE-ECC--------chHHHHHHHHHhhhhhcCCCCEEEEC
Confidence 444557888888778887766644 442 34555555665542 22589998884
No 61
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=36.09 E-value=9.8 Score=33.59 Aligned_cols=29 Identities=28% Similarity=0.658 Sum_probs=22.9
Q ss_pred CCCcccCCCCCCccccCCCCc--eeeccccC
Q 017524 1 MLMLVDCSKCRTTLQLPPGAQ--SIRCAICQ 29 (370)
Q Consensus 1 ~~~~~~C~~C~~~l~~p~~a~--~~~C~~C~ 29 (370)
|..+..|..|+.......... ++.|..|+
T Consensus 131 ~L~l~~C~~Cgg~fv~~~~~~~~~f~Cp~C~ 161 (192)
T 2avu_E 131 LLQLSSCNCCGGNFITHAHQPVGSFACSLCQ 161 (192)
T ss_dssp SEEEEECTTTCCEEEEESSCCSSCCCCTTC-
T ss_pred ceeeCcCCCCCCCeeCccCCCCCCCcCCCCC
Confidence 446678999999887777664 89999998
No 62
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=33.46 E-value=1.1e+02 Score=22.75 Aligned_cols=52 Identities=15% Similarity=-0.085 Sum_probs=30.6
Q ss_pred HHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCC-CCEEEEEEec
Q 017524 105 ARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQP-GDSLLFHFSG 165 (370)
Q Consensus 105 a~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~-gD~l~fyfSG 165 (370)
...++++|+ .+|...++-+...+ -|.+++.+-...|.+-..+ .|+|.||.-+
T Consensus 14 ~~kv~k~l~-~yg~rvQ~SVFeg~--------lt~~~~~~L~~~l~~~id~~~Dsv~iy~l~ 66 (85)
T 2i0x_A 14 VNKVKKFLR-MHLNWVQNSVFEGE--------VTLAEFERIKEGLKKIIDENSDSVIIYKLR 66 (85)
T ss_dssp HHHHHHHHT-TTSEEEETTEEEEE--------CCHHHHHHHHHHHHHSSCTTTCEEEEEEES
T ss_pred HHHHHHHHH-HhCcccceeEEEEE--------CCHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 456788886 46754443222222 3455555444455554555 6999999999
No 63
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=32.40 E-value=1.7e+02 Score=27.07 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhccCC--CCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 017524 102 INDARCMKYMLTNRFKF--PESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (370)
Q Consensus 102 ~nDa~~m~~~L~~~~Gf--~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~ 168 (370)
..=-+.++++|.+.+|. ++++|.+... ..+.|..++..+ +++||.|++-=-+|..
T Consensus 81 ~~lr~~la~~~~~~~g~~~~~~~v~~~~g---------~t~al~~~~~~l---~~~gd~Vl~~~~~~~~ 137 (389)
T 1o4s_A 81 YELREGIAKRIGERYKKDISPDQVVVTNG---------AKQALFNAFMAL---LDPGDEVIVFSPVWVS 137 (389)
T ss_dssp HHHHHHHHHHHHHHHTCCCCGGGEEEESH---------HHHHHHHHHHHH---CCTTCEEEEEESCCTT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEecC---------HHHHHHHHHHHh---CCCCCEEEEcCCCchh
Confidence 33344577777665675 5667654332 345666666655 5689988877666644
No 64
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=32.33 E-value=2.1e+02 Score=25.92 Aligned_cols=55 Identities=9% Similarity=-0.020 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhccCCC-CCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 017524 102 INDARCMKYMLTNRFKFP-ESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (370)
Q Consensus 102 ~nDa~~m~~~L~~~~Gf~-~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~ 168 (370)
..-.+.+++.|.+.+|.+ .++| +++.. ..+.+..++..+ +++||.+++.=-+|..
T Consensus 52 ~~~~~~~~~~la~~~g~~~~~~v-~~~~g--------~t~a~~~~~~~l---~~~gd~vl~~~~~~~~ 107 (386)
T 2dr1_A 52 RKVHMDTVERLREFLEVEKGEVL-LVPSS--------GTGIMEASIRNG---VSKGGKVLVTIIGAFG 107 (386)
T ss_dssp HHHHHHHHHHHHHHHTCSSSEEE-EESSC--------HHHHHHHHHHHH---SCTTCEEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCcEE-EEeCC--------hHHHHHHHHHHh---hcCCCeEEEEcCCchh
Confidence 445667888888777886 4444 44443 445566666665 4689988887666643
No 65
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=31.73 E-value=2.2e+02 Score=25.54 Aligned_cols=55 Identities=15% Similarity=0.127 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 017524 102 INDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (370)
Q Consensus 102 ~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~ 168 (370)
......+++.|.+.+|.+.++|.+... +.+.|..++..| +++||.+++---+|..
T Consensus 50 ~~~~~~l~~~la~~~~~~~~~i~~~~g---------~~~a~~~~~~~l---~~~gd~vl~~~~~~~~ 104 (354)
T 3ly1_A 50 KNEILMLGNKLAAHHQVEAPSILLTAG---------SSEGIRAAIEAY---ASLEAQLVIPELTYGD 104 (354)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGEEEESH---------HHHHHHHHHHHH---CCTTCEEEEESSSCTH
T ss_pred CCchHHHHHHHHHHhCCChHHEEEeCC---------hHHHHHHHHHHH---hCCCCeEEECCCCchH
Confidence 345577888888888887778755432 445666666655 4689988876666654
No 66
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=31.69 E-value=22 Score=22.48 Aligned_cols=31 Identities=26% Similarity=0.562 Sum_probs=23.8
Q ss_pred ccCCCCCCc---cccCCCCceeeccccCceeecc
Q 017524 5 VDCSKCRTT---LQLPPGAQSIRCAICQAITHIA 35 (370)
Q Consensus 5 ~~C~~C~~~---l~~p~~a~~~~C~~C~~vt~v~ 35 (370)
|-|+.|+.+ |..-.+.-..+|..|.+.+.|.
T Consensus 1 VlC~~C~~peT~l~~~~~~~~l~C~aCG~~~~v~ 34 (36)
T 1k81_A 1 VICRECGKPDTKIIKEGRVHLLKCMACGAIRPIR 34 (36)
T ss_dssp CCCSSSCSCEEEEEEETTEEEEEEETTTEEEEEC
T ss_pred CCCcCCCCCCcEEEEeCCcEEEEhhcCCCccccc
Confidence 568999875 5555566679999999988775
No 67
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=31.32 E-value=2.4e+02 Score=25.49 Aligned_cols=52 Identities=10% Similarity=0.197 Sum_probs=31.7
Q ss_pred HHHHHHHHHhccCC-CCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 017524 105 ARCMKYMLTNRFKF-PESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (370)
Q Consensus 105 a~~m~~~L~~~~Gf-~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~ 168 (370)
...+++.|.+.+|. +.++|.+ +.. +.+.|..+++.+ +++||.+++---+|..
T Consensus 69 ~~~l~~~la~~~g~~~~~~i~~-~~g--------~t~a~~~~~~~~---~~~gd~Vl~~~~~~~~ 121 (367)
T 3euc_A 69 SEALRAKLKEVMQVPAGMEVLL-GNG--------SDEIISMLALAA---ARPGAKVMAPVPGFVM 121 (367)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEE-EEH--------HHHHHHHHHHHT---CCTTCEEEEEESCSCC
T ss_pred HHHHHHHHHHHhCCCCcceEEE-cCC--------HHHHHHHHHHHH---cCCCCEEEEcCCCHHH
Confidence 35677777776787 5556644 432 344555555544 5689988876555544
No 68
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=30.50 E-value=29 Score=28.88 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=14.0
Q ss_pred HHhCCCCCEEEEEEecc
Q 017524 150 IQGCQPGDSLLFHFSGH 166 (370)
Q Consensus 150 ~~~a~~gD~l~fyfSGH 166 (370)
++..++||.+|||-|+=
T Consensus 32 lr~mk~GD~~~fYhs~~ 48 (145)
T 2hd9_A 32 LSRVKPGDKLVIYVRQE 48 (145)
T ss_dssp HTTCCTTCEEEEEECCE
T ss_pred HHhCCCCCEEEEEEccc
Confidence 34678999999999964
No 69
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=30.44 E-value=1.6e+02 Score=26.86 Aligned_cols=51 Identities=16% Similarity=0.245 Sum_probs=33.2
Q ss_pred HHHHHHHHhcc-CCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 017524 106 RCMKYMLTNRF-KFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (370)
Q Consensus 106 ~~m~~~L~~~~-Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~ 168 (370)
..+++.|.+.+ +..+++|.+... ..+.+..++..| +++||.|++.--+|..
T Consensus 66 ~~l~~~la~~~~~~~~~~v~~~~g---------~~~a~~~~~~~l---~~~gd~Vl~~~~~~~~ 117 (375)
T 3op7_A 66 PAFKKSVSQLYTGVKPEQILQTNG---------ATGANLLVLYSL---IEPGDHVISLYPTYQQ 117 (375)
T ss_dssp HHHHHHHHTTSSSCCGGGEEEESH---------HHHHHHHHHHHH---CCTTCEEEEEESSCTH
T ss_pred HHHHHHHHHHhccCChhhEEEcCC---------hHHHHHHHHHHh---cCCCCEEEEeCCCchh
Confidence 35777776654 466777755432 345566666655 5699999988777764
No 70
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=29.83 E-value=1.7e+02 Score=27.09 Aligned_cols=56 Identities=16% Similarity=0.080 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHHHhccC--CCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 017524 100 GCINDARCMKYMLTNRFK--FPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHG 167 (370)
Q Consensus 100 g~~nDa~~m~~~L~~~~G--f~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG 167 (370)
+...=-+.+++++.+.+| .+.++|.+ +.. ..+.+..+++.+ +++||.|++---+|.
T Consensus 76 ~~~~l~~~la~~~~~~~g~~~~~~~v~~-t~g--------~t~a~~~~~~~~---~~~gd~vl~~~p~~~ 133 (407)
T 2zc0_A 76 GIPELREELAAFLKKYDHLEVSPENIVI-TIG--------GTGALDLLGRVL---IDPGDVVITENPSYI 133 (407)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCCGGGEEE-ESH--------HHHHHHHHHHHH---CCTTCEEEEEESCCH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcceEEE-ecC--------HHHHHHHHHHHh---cCCCCEEEEeCCChH
Confidence 333444567777766567 45666644 332 345566666665 458998877655554
No 71
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=29.39 E-value=18 Score=26.58 Aligned_cols=25 Identities=28% Similarity=0.736 Sum_probs=19.1
Q ss_pred ccCCCCCCccccCCCCceeeccccCc
Q 017524 5 VDCSKCRTTLQLPPGAQSIRCAICQA 30 (370)
Q Consensus 5 ~~C~~C~~~l~~p~~a~~~~C~~C~~ 30 (370)
-.|+.|+..+.+-.+ ..|+|..|..
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCSSSCC
T ss_pred EECCCCCCcceeCCC-CCccCCCCCc
Confidence 369999998766533 4579999986
No 72
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=29.04 E-value=1.7e+02 Score=26.20 Aligned_cols=57 Identities=11% Similarity=0.104 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEecccccc
Q 017524 102 INDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQ 170 (370)
Q Consensus 102 ~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~~~ 170 (370)
..-.+.+++.|.+.+|.+.++|.+ +.. ..+.+..+++.+ .++||.+++.=-+|....
T Consensus 48 ~~~~~~~~~~l~~~~g~~~~~v~~-~~g--------~t~a~~~~~~~~---~~~gd~vl~~~~~~~~~~ 104 (359)
T 1svv_A 48 DSHCAKAARLIGELLERPDADVHF-ISG--------GTQTNLIACSLA---LRPWEAVIATQLGHISTH 104 (359)
T ss_dssp SHHHHHHHHHHHHHHTCTTSEEEE-ESC--------HHHHHHHHHHHH---CCTTEEEEEETTSHHHHS
T ss_pred cHHHHHHHHHHHHHhCCCCccEEE-eCC--------chHHHHHHHHHH---hCCCCEEEEcccchHHHH
Confidence 444567888888777877766644 442 345566666665 358998887655555443
No 73
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=28.81 E-value=1e+02 Score=28.29 Aligned_cols=55 Identities=7% Similarity=0.040 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHhccC--CCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 017524 101 CINDARCMKYMLTNRFK--FPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHG 167 (370)
Q Consensus 101 ~~nDa~~m~~~L~~~~G--f~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG 167 (370)
...-.+.++++|.+.+| .+.++|.+ +.. +.+.|..++..+ +++||.+++---+|.
T Consensus 69 ~~~~~~~l~~~l~~~~g~~~~~~~v~~-~~g--------~~~a~~~~~~~~---~~~gd~vl~~~~~~~ 125 (391)
T 4dq6_A 69 PDSYNESIVNWLYRRHNWKIKSEWLIY-SPG--------VIPAISLLINEL---TKANDKIMIQEPVYS 125 (391)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEE-ESC--------HHHHHHHHHHHH---SCTTCEEEECSSCCT
T ss_pred CHHHHHHHHHHHHHHhCCCCcHHHeEE-cCC--------hHHHHHHHHHHh---CCCCCEEEEcCCCCH
Confidence 34555678888887778 66777754 432 456666666666 468998887544443
No 74
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=28.73 E-value=2.2e+02 Score=25.96 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhccCCCCC-ceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 017524 103 NDARCMKYMLTNRFKFPES-SIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (370)
Q Consensus 103 nDa~~m~~~L~~~~Gf~~~-~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~ 168 (370)
.-.+.+++.|.+.+|.+++ +|. ++.. ..+.+..++..+ +++||.+++.=-+|..
T Consensus 67 ~~~~~~~~~la~~~g~~~~~~v~-~t~g--------~t~al~~~~~~~---~~~gd~Vl~~~~~~~~ 121 (393)
T 1vjo_A 67 ALMDEIQSLLRYVWQTENPLTIA-VSGT--------GTAAMEATIANA---VEPGDVVLIGVAGYFG 121 (393)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEE-ESSC--------HHHHHHHHHHHH---CCTTCEEEEEESSHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcEEE-EeCc--------hHHHHHHHHHhc---cCCCCEEEEEcCChhH
Confidence 4456788888877788766 664 4442 445666666666 4689988877556554
No 75
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=28.69 E-value=3.3e+02 Score=24.79 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHHHhccCC--CCC-ceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 017524 100 GCINDARCMKYMLTNRFKF--PES-SIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (370)
Q Consensus 100 g~~nDa~~m~~~L~~~~Gf--~~~-~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~ 168 (370)
|...=.+.++++|.+.+|+ +++ +|.+ +.. ..+.|..+++.+ +++||.|++.--+|..
T Consensus 68 g~~~l~~~la~~l~~~~g~~~~~~~~v~~-~~g--------~~~a~~~~~~~~---~~~gd~vl~~~p~~~~ 127 (386)
T 1u08_A 68 GVQALREAIAQKTERLYGYQPDADSDITV-TAG--------ATEALYAAITAL---VRNGDEVICFDPSYDS 127 (386)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCCTTTTEEE-ESS--------HHHHHHHHHHHH---CCTTCEEEEEESCCTT
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCEEE-cCC--------hHHHHHHHHHHh---CCCCCEEEEeCCCchh
Confidence 3344445677777665674 455 6644 432 445666666655 4689988887666654
No 76
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=28.61 E-value=1.3e+02 Score=27.82 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=27.7
Q ss_pred HHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 017524 108 MKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (370)
Q Consensus 108 m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~ 168 (370)
+++.|.+.+|.+.++|.+ +. -| +.+..++..+ +++||.+++---+|+.
T Consensus 76 ~~~~la~~~g~~~~~i~~-~s--------Gt-~a~~~~~~~~---~~~gd~vl~~~~~~~~ 123 (417)
T 3n0l_A 76 AIERCKKLFNCKFANVQP-NS--------GS-QANQGVYAAL---INPGDKILGMDLSHGG 123 (417)
T ss_dssp HHHHHHHHHTCSEEECCC-SS--------HH-HHHHHHHHHH---SCTTCEEEEECC----
T ss_pred HHHHHHHHhCCCCcceEe-cc--------HH-HHHHHHHHHh---cCCCCEEEeccccccc
Confidence 555676667876555432 22 23 6666666666 5799998876655543
No 77
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=27.89 E-value=1.9e+02 Score=27.61 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=30.7
Q ss_pred HHHHHHHHHhccCC-CCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 017524 105 ARCMKYMLTNRFKF-PESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHG 167 (370)
Q Consensus 105 a~~m~~~L~~~~Gf-~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG 167 (370)
.+.+++++.+.+|. ++++|.+ +.. ..+.|..+++-| +++||.|++---+|.
T Consensus 124 r~~ia~~~~~~~g~~~~~~v~~-t~G--------~~~al~~~~~~l---~~~Gd~Vlv~~p~y~ 175 (448)
T 3aow_A 124 RETLMKWLGKRYGISQDNDIMI-TSG--------SQQALDLIGRVF---LNPGDIVVVEAPTYL 175 (448)
T ss_dssp HHHHHHHHHHHHCCCTTSEEEE-ESS--------HHHHHHHHHHHH---CCTTCEEEEEESCCH
T ss_pred HHHHHHHHHHhcCcCChhhEEE-eCc--------HHHHHHHHHHHH---cCCCCEEEEeCCChH
Confidence 34566666555587 5566644 432 445666666665 468998887655554
No 78
>1zpw_X Hypothetical protein TT1823; hyphotetical protein, structural genom NPPSFA, national project on protein structural and function analyses; 1.64A {Thermus thermophilus} SCOP: d.58.58.1
Probab=27.52 E-value=90 Score=23.57 Aligned_cols=55 Identities=13% Similarity=-0.008 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCC-CCEEEEEEecc
Q 017524 103 NDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQP-GDSLLFHFSGH 166 (370)
Q Consensus 103 nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~-gD~l~fyfSGH 166 (370)
.....+++.|+ ++|...++-+...+-. ......+...+..++ .+ .|+|+||.-+-
T Consensus 16 kr~~kv~k~l~-~yg~rvQ~SVFe~~lt-----~~~~~~L~~~L~~~i---d~~~Dsv~iy~l~~ 71 (90)
T 1zpw_X 16 TRRVKLANLLK-SYGERVQLSVFECYLD-----ERLLEDLRRRARRLL---DLGQDALRIYPVAG 71 (90)
T ss_dssp HHHHHHHHHHH-TTEEEEETTEEEEEEC-----HHHHHHHHHHHHHHC---CTTTCEEEEEECCS
T ss_pred HHHHHHHHHHH-HhCccceEeEEEEEcC-----HHHHHHHHHHHHHhh---CCCCCEEEEEEeCC
Confidence 56778889987 4674433322222210 023345555555554 44 79999999886
No 79
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=27.01 E-value=39 Score=24.05 Aligned_cols=27 Identities=26% Similarity=0.635 Sum_probs=19.9
Q ss_pred cccCCCCCCccccCCCCceeeccccCceeeccC
Q 017524 4 LVDCSKCRTTLQLPPGAQSIRCAICQAITHIAD 36 (370)
Q Consensus 4 ~~~C~~C~~~l~~p~~a~~~~C~~C~~vt~v~~ 36 (370)
...|..|+++-. .-.|..|...|.++-
T Consensus 5 mr~C~~Cg~YTL------k~~CP~CG~~t~~ah 31 (60)
T 2aus_D 5 IRKCPKCGRYTL------KETCPVCGEKTKVAH 31 (60)
T ss_dssp CEECTTTCCEES------SSBCTTTCSBCEESS
T ss_pred ceECCCCCCEEc------cccCcCCCCccCCCC
Confidence 456999987533 334999999988874
No 80
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=26.71 E-value=93 Score=28.38 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHh-CCCCCEEEEE
Q 017524 102 INDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG-CQPGDSLLFH 162 (370)
Q Consensus 102 ~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~-a~~gD~l~fy 162 (370)
..-...+++.|.+.+|.++++|.+ +.. ..+.|..++..|... .++||.|++-
T Consensus 42 ~~~~~~l~~~la~~~g~~~~~v~~-~~g--------~t~a~~~~~~~l~~~~~~~gd~Vl~~ 94 (382)
T 4eb5_A 42 REAVQEAREKVAKLVNGGGGTVVF-TSG--------ATEANNLAIIGYAMRNARKGKHILVS 94 (382)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEE-ESS--------HHHHHHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEE-cCc--------hHHHHHHHHHHHHhhccCCCCEEEEC
Confidence 345667888888778887666644 432 345555556655421 2489988774
No 81
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=26.51 E-value=1.3e+02 Score=28.16 Aligned_cols=56 Identities=14% Similarity=0.036 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHHHhccCCCC-CceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 017524 100 GCINDARCMKYMLTNRFKFPE-SSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHG 167 (370)
Q Consensus 100 g~~nDa~~m~~~L~~~~Gf~~-~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG 167 (370)
|...=.+.++++|....+... ++|. ++.. ..+.|..++..| +++||.|++-=-+|.
T Consensus 81 g~~~lr~~ia~~~~~~~~~~~~~~i~-~t~g--------~~~al~~~~~~l---~~~gd~Vl~~~p~~~ 137 (418)
T 3rq1_A 81 GIPDFLCAAEKECFGNFRPEGHIRSI-ATAG--------GTGGIHHLIHNY---TEPGDEVLTADWYWG 137 (418)
T ss_dssp CCHHHHHHHHHHHHGGGCCSSEEEEE-EESH--------HHHHHHHHHHHH---SCTTCEEEEESSCCT
T ss_pred ChHHHHHHHHHHHhcccCccccccEE-ECCc--------hHHHHHHHHHHh---cCCCCEEEECCCCch
Confidence 434445566777755444221 1443 3432 455666666655 568999888544443
No 82
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=26.34 E-value=53 Score=30.35 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=23.4
Q ss_pred chHHHHHHHHHHHHHhCCCCCEEEEEEe
Q 017524 137 PTKYNMRMALYWLIQGCQPGDSLLFHFS 164 (370)
Q Consensus 137 pT~~nI~~al~~L~~~a~~gD~l~fyfS 164 (370)
-|++.|.+.|+.| ++++||+|++|=|
T Consensus 15 ~t~~~l~~~L~~L--Gi~~Gd~llVHsS 40 (268)
T 3ijw_A 15 NTIKTITNDLRKL--GLKKGMTVIVHSS 40 (268)
T ss_dssp BCHHHHHHHHHHH--TCCTTCEEEEEEC
T ss_pred cCHHHHHHHHHHc--CCCCCCEEEEEec
Confidence 5999999999988 6789999999977
No 83
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=26.29 E-value=1.2e+02 Score=28.01 Aligned_cols=49 Identities=6% Similarity=0.126 Sum_probs=28.9
Q ss_pred HHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 017524 107 CMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHG 167 (370)
Q Consensus 107 ~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG 167 (370)
.+++.|.+.+|.++++|.+ +.. +.+.|..+++.+ +++||.+++---+|.
T Consensus 78 ~l~~~la~~~g~~~~~v~~-~~g--------~~~al~~~~~~~---~~~gd~Vl~~~p~y~ 126 (397)
T 2zyj_A 78 PLRAFVAEWIGVRPEEVLI-TTG--------SQQALDLVGKVF---LDEGSPVLLEAPSYM 126 (397)
T ss_dssp HHHHHHHHHHTSCGGGEEE-ESH--------HHHHHHHHHHHH---CCTTCEEEEEESCCH
T ss_pred HHHHHHHHHhCCChhhEEE-ecc--------HHHHHHHHHHHh---CCCCCEEEEeCCCcH
Confidence 3455555545666667654 331 445666666655 468998877655554
No 84
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=25.79 E-value=1.8e+02 Score=26.27 Aligned_cols=59 Identities=10% Similarity=-0.085 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHh----------CCCCCEEEEEEeccccc
Q 017524 102 INDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG----------CQPGDSLLFHFSGHGSQ 169 (370)
Q Consensus 102 ~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~----------a~~gD~l~fyfSGHG~~ 169 (370)
..-.+.+++.|.+.+|.+.++|.+ +.. ..+.+..++..+... ..+||.|++--.+|...
T Consensus 68 ~~~~~~l~~~la~~~~~~~~~i~~-~~g--------gt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~ 136 (397)
T 3f9t_A 68 KLLEEKAVALLGSLLNNKDAYGHI-VSG--------GTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSF 136 (397)
T ss_dssp HHHHHHHHHHHHHHTTCTTCEEEE-ESC--------HHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEE-ecC--------cHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHH
Confidence 333446788888888988877654 443 344566666665542 34689999988888754
No 85
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=25.74 E-value=2.5e+02 Score=25.68 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=35.7
Q ss_pred chHHHHHHHHHHHHhccC--CCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCC-CEEEEEEecccc
Q 017524 100 GCINDARCMKYMLTNRFK--FPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPG-DSLLFHFSGHGS 168 (370)
Q Consensus 100 g~~nDa~~m~~~L~~~~G--f~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~g-D~l~fyfSGHG~ 168 (370)
|...=.+.++++|.+.+| .++++|.+ +.. +.+.|..+++.| +++| |.|++---+|..
T Consensus 77 g~~~lr~~la~~l~~~~g~~~~~~~i~~-~~g--------~~~al~~~~~~l---~~~g~d~vl~~~p~~~~ 136 (398)
T 3ele_A 77 GDVETRAAIAEFLNNTHGTHFNADNLYM-TMG--------AAASLSICFRAL---TSDAYDEFITIAPYFPE 136 (398)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCGGGEEE-ESS--------HHHHHHHHHHHH---CCSTTCEEEEESSCCTH
T ss_pred CcHHHHHHHHHHHHHHhCCCCChHHEEE-ccC--------HHHHHHHHHHHH---cCCCCCEEEEeCCCchh
Confidence 444445667888876667 45667754 432 455666666666 5689 988876555543
No 86
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=25.69 E-value=1.6e+02 Score=27.58 Aligned_cols=58 Identities=7% Similarity=0.025 Sum_probs=34.9
Q ss_pred chHHHHHHHHHHHHhccC---CCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEeccccc
Q 017524 100 GCINDARCMKYMLTNRFK---FPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQ 169 (370)
Q Consensus 100 g~~nDa~~m~~~L~~~~G---f~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~~ 169 (370)
+...=-+.++++|.+++| .++++|.+ +.. +.+.|..+++.+ +++||.|++---+|...
T Consensus 86 g~~~lr~~la~~l~~~~g~~~~~~~~v~~-t~G--------~~~al~~~~~~l---~~~gd~Vl~~~p~y~~~ 146 (425)
T 1vp4_A 86 GDPVLKQQILKLLERMYGITGLDEDNLIF-TVG--------SQQALDLIGKLF---LDDESYCVLDDPAYLGA 146 (425)
T ss_dssp CCHHHHHHHHHHHHHHHCCCSCCGGGEEE-EEH--------HHHHHHHHHHHH---CCTTCEEEEEESCCHHH
T ss_pred CCHHHHHHHHHHHHhccCCCCCCcccEEE-ecc--------HHHHHHHHHHHh---CCCCCEEEEeCCCcHHH
Confidence 333334567777766558 45667644 432 455666666655 46899888776666543
No 87
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=25.69 E-value=98 Score=28.26 Aligned_cols=52 Identities=8% Similarity=0.043 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhccC--CCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 017524 104 DARCMKYMLTNRFK--FPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHG 167 (370)
Q Consensus 104 Da~~m~~~L~~~~G--f~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG 167 (370)
-.+.++++|.+.+| .+.++|.+ +.. ..+.|..+++.+ +++||.|++---+|.
T Consensus 64 ~~~~l~~~l~~~~g~~~~~~~v~~-~~g--------~~~a~~~~~~~l---~~~gd~vl~~~~~~~ 117 (383)
T 3kax_A 64 IGDIICNWTKKQYNWDIQKEWIVF-SAG--------IVPALSTSIQAF---TKENESVLVQPPIYP 117 (383)
T ss_dssp HHHHHHHHHHHHHCCCCCGGGEEE-ESC--------HHHHHHHHHHHH---CCTTCEEEECSSCCH
T ss_pred HHHHHHHHHHHHhCCCCChhhEEE-cCC--------HHHHHHHHHHHh---CCCCCEEEEcCCCcH
Confidence 34567888877777 56667654 442 456666666666 568999887655554
No 88
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=25.18 E-value=2.8e+02 Score=25.01 Aligned_cols=52 Identities=8% Similarity=0.121 Sum_probs=34.4
Q ss_pred HHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 017524 105 ARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (370)
Q Consensus 105 a~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~ 168 (370)
...+++.|.+.+|.++++|.+ +.. +.+.+..+++-+ +++||.+++---+|..
T Consensus 69 ~~~lr~~la~~~~~~~~~v~~-~~g--------~t~a~~~~~~~~---~~~gd~vl~~~~~~~~ 120 (363)
T 3ffh_A 69 ASSLRKEVADFYQLEEEELIF-TAG--------VDELIELLTRVL---LDTTTNTVMATPTFVQ 120 (363)
T ss_dssp CHHHHHHHHHHHTCCGGGEEE-ESS--------HHHHHHHHHHHH---CSTTCEEEEEESSCHH
T ss_pred hHHHHHHHHHHhCCChhhEEE-eCC--------HHHHHHHHHHHH---ccCCCEEEEcCCChHH
Confidence 456777777777887777755 432 445666666655 5689988887656553
No 89
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=25.13 E-value=38 Score=35.95 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=28.0
Q ss_pred CcccCCC--CCCcc----ccCCCCceeeccccCceeeccC
Q 017524 3 MLVDCSK--CRTTL----QLPPGAQSIRCAICQAITHIAD 36 (370)
Q Consensus 3 ~~~~C~~--C~~~l----~~p~~a~~~~C~~C~~vt~v~~ 36 (370)
..++|.+ |++++ .+-.+.+..+|..|...+.+..
T Consensus 61 ~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~~N~~P~ 100 (769)
T 2nut_A 61 EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPP 100 (769)
T ss_dssp CCCBCSSTTCCCBCCTTSEEETTTTEEECSSSCCEEECCG
T ss_pred CCCcCCCCCCCeEECCceEEeCCCCEEEccCCCCCCCCCh
Confidence 4689999 99975 4456788999999999998874
No 90
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=24.90 E-value=58 Score=30.40 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=24.3
Q ss_pred CCchHHHHHHHHHHHHHhCCCCCEEEEEEe
Q 017524 135 KRPTKYNMRMALYWLIQGCQPGDSLLFHFS 164 (370)
Q Consensus 135 ~~pT~~nI~~al~~L~~~a~~gD~l~fyfS 164 (370)
..-|++.|.+.|+.| ++++||+|++|=|
T Consensus 20 ~~~T~~~L~~~L~~L--GI~~Gd~llVHsS 47 (286)
T 3sma_A 20 ELVTRDRLASDLAAL--GVRPGGVLLVHAS 47 (286)
T ss_dssp CEECHHHHHHHHHHH--TCCTTCEEEEEEC
T ss_pred CCcCHHHHHHHHHHc--CCCCCCEEEEEec
Confidence 346999999999998 6789999999976
No 91
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8
Probab=24.86 E-value=42 Score=28.14 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=13.5
Q ss_pred HHHhCCCCCEEEEEEec
Q 017524 149 LIQGCQPGDSLLFHFSG 165 (370)
Q Consensus 149 L~~~a~~gD~l~fyfSG 165 (370)
+.+..+.||.+|||=|+
T Consensus 39 ~mr~Mk~GD~~ffYHS~ 55 (145)
T 2gbs_A 39 HMVAMRRGDRAFYYHSN 55 (145)
T ss_dssp HHHHCCTTCEEEEEETT
T ss_pred HHHhcCCCCEEEEEEeC
Confidence 33356799999999886
No 92
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=24.77 E-value=2.1e+02 Score=26.13 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHHhccCC--CCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 017524 100 GCINDARCMKYMLTNRFKF--PESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHG 167 (370)
Q Consensus 100 g~~nDa~~m~~~L~~~~Gf--~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG 167 (370)
|...=.+.++++|.+.+|+ +.++|.+... ..+.|..+++.+ +++||.|++.=-+|.
T Consensus 68 g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g---------~~~a~~~~~~~~---~~~gd~vl~~~~~~~ 125 (388)
T 1j32_A 68 GEPRLREAIAQKLQRDNGLCYGADNILVTNG---------GKQSIFNLMLAM---IEPGDEVIIPAPFWV 125 (388)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCGGGEEEESH---------HHHHHHHHHHHH---CCTTCEEEEESSCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCChhhEEEcCC---------HHHHHHHHHHHh---cCCCCEEEEcCCCCh
Confidence 3344445677888766674 5566654332 345666666666 468998877644553
No 93
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=24.71 E-value=89 Score=29.15 Aligned_cols=57 Identities=9% Similarity=0.037 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHh-CCCCCEEEEEEeccc
Q 017524 102 INDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG-CQPGDSLLFHFSGHG 167 (370)
Q Consensus 102 ~nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~-a~~gD~l~fyfSGHG 167 (370)
..-.+.+++.|.+.+|.+.++|.+... ..+.+..++..+.+. .++||.|++.--.|.
T Consensus 67 ~~~~~~l~~~la~~~~~~~~~v~~~~g---------gt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~ 124 (423)
T 3lvm_A 67 EEAVDIARNQIADLVGADPREIVFTSG---------ATESDNLAIKGAANFYQKKGKHIITSKTEHK 124 (423)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEESS---------HHHHHHHHHHHHHHHHTTTCCEEEEETTSCH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEeCC---------hHHHHHHHHHHHHHhhccCCCEEEECCccch
Confidence 344567888888778888777755433 345566666666542 236999887544443
No 94
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=24.67 E-value=2.2e+02 Score=26.03 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=35.0
Q ss_pred chHHHHHHHHHHHHhccC--CCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 017524 100 GCINDARCMKYMLTNRFK--FPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (370)
Q Consensus 100 g~~nDa~~m~~~L~~~~G--f~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~ 168 (370)
|...=.+.++++|.+.+| .++++|.+ +.. ..+.|..+++.+ +++||.+++---+|..
T Consensus 69 g~~~lr~~ia~~~~~~~g~~~~~~~v~~-t~g--------~~~al~~~~~~l---~~~gd~vl~~~p~~~~ 127 (391)
T 3h14_A 69 GLPALRQRIARLYGEWYGVDLDPGRVVI-TPG--------SSGGFLLAFTAL---FDSGDRVGIGAPGYPS 127 (391)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCGGGEEE-ESS--------HHHHHHHHHHHH---CCTTCEEEEEESCCHH
T ss_pred ChHHHHHHHHHHHHHHhCCCCCHHHEEE-ecC--------hHHHHHHHHHHh---cCCCCEEEEcCCCCcc
Confidence 334445567777776666 45667644 442 345555556555 4689998877666653
No 95
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=24.66 E-value=33 Score=23.84 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=22.9
Q ss_pred cccCCCCCCccccCCCCceeeccccCcee
Q 017524 4 LVDCSKCRTTLQLPPGAQSIRCAICQAIT 32 (370)
Q Consensus 4 ~~~C~~C~~~l~~p~~a~~~~C~~C~~vt 32 (370)
...|+.|+..+.+......+.|..|....
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 35699999977666666799999998754
No 96
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.52 E-value=53 Score=26.06 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=25.5
Q ss_pred CCCcccCCCCCCccccCCCC----ceeeccccCceeeccC
Q 017524 1 MLMLVDCSKCRTTLQLPPGA----QSIRCAICQAITHIAD 36 (370)
Q Consensus 1 ~~~~~~C~~C~~~l~~p~~a----~~~~C~~C~~vt~v~~ 36 (370)
|..+.-|+.|+..|.+..+. ..+.|..|..+-.+..
T Consensus 1 m~~m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~ 40 (113)
T 3h0g_I 1 MSNFQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAAT 40 (113)
T ss_dssp --CCCCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCSC
T ss_pred CCcceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcCC
Confidence 56677899999976555432 3699999998876653
No 97
>1zce_A Hypothetical protein ATU2648; alpha-beta protein., structural genomics, PSI, protein struc initiative; 1.30A {Agrobacterium tumefaciens str} SCOP: b.122.1.8
Probab=24.35 E-value=44 Score=28.35 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.2
Q ss_pred HHHHhCCCCCEEEEEEec
Q 017524 148 WLIQGCQPGDSLLFHFSG 165 (370)
Q Consensus 148 ~L~~~a~~gD~l~fyfSG 165 (370)
.+.+..+.||.+|||=|+
T Consensus 39 N~mr~Mk~GD~~fFYHS~ 56 (155)
T 1zce_A 39 NNMRAMKIGDKGFFYHSN 56 (155)
T ss_dssp HHHHTCCTTCEEEEEETT
T ss_pred HHHHhccCCCEEEEEEeC
Confidence 344467899999999887
No 98
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=24.32 E-value=3.5e+02 Score=25.10 Aligned_cols=56 Identities=7% Similarity=0.026 Sum_probs=33.9
Q ss_pred chHHHHHHHHHHHHhccCC--CCC-ceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 017524 100 GCINDARCMKYMLTNRFKF--PES-SIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHG 167 (370)
Q Consensus 100 g~~nDa~~m~~~L~~~~Gf--~~~-~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG 167 (370)
|...=.+.++++|.+.+|. +.+ +|.+ +.. ..+.|..+++.+ +++||.|++.--+|.
T Consensus 78 g~~~l~~~la~~l~~~~g~~~~~~~~v~~-~~g--------~~~a~~~~~~~~---~~~gd~Vl~~~p~y~ 136 (429)
T 1yiz_A 78 GHPRLVQALSKLYSQLVDRTINPMTEVLV-TVG--------AYEALYATIQGH---VDEGDEVIIIEPFFD 136 (429)
T ss_dssp CCHHHHHHHHHHHHHHHTSCCCTTTSEEE-ESH--------HHHHHHHHHHHH---CCTTCEEEEEESCCT
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCcCCEEE-ecC--------hHHHHHHHHHHh---cCCCCEEEEcCCCch
Confidence 4444456678888765674 455 6654 331 345666666655 468998877655553
No 99
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=24.10 E-value=61 Score=29.94 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHHHHhCCCCCEEEEEEe
Q 017524 137 PTKYNMRMALYWLIQGCQPGDSLLFHFS 164 (370)
Q Consensus 137 pT~~nI~~al~~L~~~a~~gD~l~fyfS 164 (370)
-|++.|.+.|+.| ++++||+|++|=|
T Consensus 13 ~T~~~L~~~L~~L--GI~~Gd~llVHsS 38 (273)
T 2nyg_A 13 RTKQSITEDLKAL--GLKKGMTVLVHSS 38 (273)
T ss_dssp BCHHHHHHHHHHH--TCCTTCEEEEEEC
T ss_pred cCHHHHHHHHHHc--CCCCCCEEEEEec
Confidence 5899999999988 6789999999976
No 100
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=24.08 E-value=47 Score=28.66 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=14.0
Q ss_pred HHHhCCCCCEEEEEEecc
Q 017524 149 LIQGCQPGDSLLFHFSGH 166 (370)
Q Consensus 149 L~~~a~~gD~l~fyfSGH 166 (370)
+.+..+.||.+|||-|+.
T Consensus 55 ~mr~Mk~GD~vfFYHS~c 72 (172)
T 2ar1_A 55 NMRAMSVGDKVLFYHSNT 72 (172)
T ss_dssp HHHHCCTTCEEEEEECSS
T ss_pred HHHhcCCCCEEEEEecCC
Confidence 333567999999998873
No 101
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=24.00 E-value=40 Score=25.49 Aligned_cols=27 Identities=19% Similarity=0.576 Sum_probs=19.4
Q ss_pred cccCCCCCCccccCCCCceeeccccCcee
Q 017524 4 LVDCSKCRTTLQLPPGAQSIRCAICQAIT 32 (370)
Q Consensus 4 ~~~C~~C~~~l~~p~~a~~~~C~~C~~vt 32 (370)
.+.|+.|+..|. ......+|..|++--
T Consensus 2 ~~~CP~C~~~l~--~~~~~~~C~~C~~~~ 28 (81)
T 2jrp_A 2 EITCPVCHHALE--RNGDTAHCETCAKDF 28 (81)
T ss_dssp CCCCSSSCSCCE--ECSSEEECTTTCCEE
T ss_pred CCCCCCCCCccc--cCCCceECccccccC
Confidence 378999988765 345577899988643
No 102
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=23.72 E-value=2.4e+02 Score=26.37 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=57.5
Q ss_pred HHHHHHHHHhccCCCC---------CceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCCCC
Q 017524 105 ARCMKYMLTNRFKFPE---------SSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNYNG 175 (370)
Q Consensus 105 a~~m~~~L~~~~Gf~~---------~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~~~~d~~g 175 (370)
-+.++++|.+.+|.+. ++| +++.. +.+.|..+++-| +++||.|++-=-+|.......
T Consensus 84 r~~ia~~l~~~~g~~~~~~~~~~~~~~i-~~t~G--------~~~al~~~~~~l---~~~gd~Vlv~~p~y~~~~~~~-- 149 (425)
T 2r2n_A 84 LSWLKQLQIKLHNPPTIHYPPSQGQMDL-CVTSG--------SQQGLCKVFEMI---INPGDNVLLDEPAYSGTLQSL-- 149 (425)
T ss_dssp HHHHHHHHHHHHCCTTTTSCGGGTCEEE-EEESS--------HHHHHHHHHHHH---CCTTCEEEEESSCCHHHHHHH--
T ss_pred HHHHHHHHHHhcCCCCccccccCCcCcE-EEeCc--------HHHHHHHHHHHh---CCCCCEEEEeCCCcHHHHHHH--
Confidence 4567788876678764 355 44442 456666666666 468998888655554332210
Q ss_pred CCCCCcceeEEcccCCCCCcccHHHHHHhhcCc--------CCCCCeEEEEEcCCCCCCCC
Q 017524 176 EEVDGYDETLCPVDFETQGMIVDDEINTTLVRP--------LPRGARLHAIIDACHSGTVL 228 (370)
Q Consensus 176 de~dG~de~L~p~D~~~~g~I~ddeL~~~Lv~~--------l~~g~~l~~IlD~ChSG~~~ 228 (370)
+.-|..-..+|.|. +| +..++|.+.|.+. .....++++++...|..+..
T Consensus 150 -~~~g~~~~~v~~~~--~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~ 206 (425)
T 2r2n_A 150 -HPLGCNIINVASDE--SG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGN 206 (425)
T ss_dssp -GGGTCEEEEECEET--TE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCC
T ss_pred -HHcCCEEEEeCcCC--CC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCC
Confidence 11233334455552 33 5567787776421 01234555556766764443
No 103
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=23.63 E-value=1.4e+02 Score=27.18 Aligned_cols=35 Identities=11% Similarity=-0.029 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHHhCCCCCEEEEEEeccccccC
Q 017524 137 PTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQR 171 (370)
Q Consensus 137 pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~~~~ 171 (370)
|+-..-+.++.++.+...+++.+++..+|||....
T Consensus 266 pssa~alaa~~~~~~~~~~~~~vv~i~tg~g~ky~ 300 (303)
T 1o58_A 266 ISSGANVAAALKVAQKLGPDARVVTVAPDHAERYL 300 (303)
T ss_dssp HHHHHHHHHHHHHHHTSCTTCCEEEEECBBGGGCT
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEECCCCcccc
Confidence 65555555566666666688999999999998754
No 104
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=23.53 E-value=37 Score=36.04 Aligned_cols=34 Identities=32% Similarity=0.692 Sum_probs=27.8
Q ss_pred CcccCCC--CCCcc----ccCCCCceeeccccCceeeccC
Q 017524 3 MLVDCSK--CRTTL----QLPPGAQSIRCAICQAITHIAD 36 (370)
Q Consensus 3 ~~~~C~~--C~~~l----~~p~~a~~~~C~~C~~vt~v~~ 36 (370)
..++|.+ |++++ .+-.+.+..+|..|...+.+..
T Consensus 52 ~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~~N~~P~ 91 (768)
T 1m2o_A 52 NPVVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPP 91 (768)
T ss_dssp CCCBCCSTTTCCBCCTTSCEETTTTEECCTTTCCCCBCCG
T ss_pred CCCccCCCCCCeEECCceEEeCCCCEEEcccCCCCCCCCh
Confidence 4689999 99975 4446778999999999998774
No 105
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=23.38 E-value=51 Score=28.05 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=13.4
Q ss_pred HHHhCCCCCEEEEEEec
Q 017524 149 LIQGCQPGDSLLFHFSG 165 (370)
Q Consensus 149 L~~~a~~gD~l~fyfSG 165 (370)
+.+..+.||.+|||=|+
T Consensus 37 ~mr~Mk~GD~~ffYHS~ 53 (157)
T 2eve_A 37 FLRTMAEGDEFFFYHSS 53 (157)
T ss_dssp HHHHCCTTCEEEEEECS
T ss_pred HHHhcCCCCEEEEEecC
Confidence 33356799999999887
No 106
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=23.36 E-value=1.6e+02 Score=27.12 Aligned_cols=54 Identities=15% Similarity=0.128 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 017524 103 NDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHG 167 (370)
Q Consensus 103 nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG 167 (370)
.-.+.+++.|.+.+|.+.+++.+++.. ..+.|..++..+ +++||.+++.--+|-
T Consensus 44 ~~~~~l~~~la~~~g~~~~~~~~~~~s--------~t~al~~~~~~l---~~~gd~Vl~~~~~~~ 97 (416)
T 3isl_A 44 GIMNETMEMLRELFQTKNRWAYPIDGT--------SRAGIEAVLASV---IEPEDDVLIPIYGRF 97 (416)
T ss_dssp HHHHHHHHHHHHHTTCCCSEEEEEESC--------HHHHHHHHHHHH---CCTTCEEEEEESSHH
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEecCc--------HHHHHHHHHHHh---cCCCCEEEEecCCcc
Confidence 346678888888889887766656653 346666667666 679999888766644
No 107
>4es1_A BH0342 protein; ferredoxin, nuclease, hydrolase; 1.10A {Bacillus halodurans} PDB: 4es2_A 4es3_A
Probab=23.24 E-value=1.1e+02 Score=23.71 Aligned_cols=59 Identities=17% Similarity=0.107 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEeccccc
Q 017524 103 NDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQ 169 (370)
Q Consensus 103 nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~~ 169 (370)
.=...++++|+ .+|...++-+...+-. .+....+...|..++.. ..|+|.||.-|-...
T Consensus 22 kR~~kv~k~~~-~yg~rvQ~SVFe~~lt-----~~~~~~L~~~l~~~id~--~~Dsv~iy~l~~~~~ 80 (100)
T 4es1_A 22 KRLRKVAKACQ-NYGQRVQNSVFECIVD-----STQLTSLKLELTSLIDE--EKDSLRIYRLGNNYK 80 (100)
T ss_dssp HHHHHHHHHHH-TTEEEEETTEEEEEEC-----HHHHHHHHHHHHHHSCT--TTCEEEEEEECCCSS
T ss_pred HHHHHHHHHHH-HhChhheeeEEEEEcC-----HHHHHHHHHHHHhhcCC--CCCEEEEEEcCCCcc
Confidence 34567888886 4675433322222210 02334444444444432 459999999885443
No 108
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=22.90 E-value=1.5e+02 Score=26.95 Aligned_cols=36 Identities=11% Similarity=0.030 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCC
Q 017524 137 PTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRN 172 (370)
Q Consensus 137 pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~~~~d 172 (370)
|+-..-+.++.++.+...+++.+++..+|||....+
T Consensus 262 pssa~a~aa~~~~~~~~~~~~~vv~i~tg~g~ky~~ 297 (304)
T 1ve1_A 262 MSSGGIVWAALQVARELGPGKRVACISPDGGWKYLS 297 (304)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEECBBSGGGTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEECCCCccCCC
Confidence 555555555555555556889999999999988654
No 109
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=22.90 E-value=2.4e+02 Score=25.52 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 017524 103 NDARCMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (370)
Q Consensus 103 nDa~~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~ 168 (370)
.....+++.|.+.+|.+.++|.+ +.. ..+.+..+++.+. .++||.|++.--+|..
T Consensus 59 ~~~~~l~~~la~~~g~~~~~v~~-~~g--------~t~a~~~~~~~~~--~~~gd~vl~~~~~~~~ 113 (390)
T 1elu_A 59 QLIAQLRQALAETFNVDPNTITI-TDN--------VTTGCDIVLWGLD--WHQGDEILLTDCEHPG 113 (390)
T ss_dssp HHHHHHHHHHHHHTTSCGGGEEE-ESS--------HHHHHHHHHHHSC--CCTTCEEEEETTCCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHEEE-eCC--------hHHHHHHHHhCCC--CCCCCEEEEecCcccH
Confidence 45677888888778887777654 432 3344555554441 4689988876445543
No 110
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=22.87 E-value=3.4e+02 Score=25.35 Aligned_cols=59 Identities=14% Similarity=0.185 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHHHhccC----CCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEecccccc
Q 017524 100 GCINDARCMKYMLTNRFK----FPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQ 170 (370)
Q Consensus 100 g~~nDa~~m~~~L~~~~G----f~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~~~ 170 (370)
|...=.+.+++++.+.+| .+.++|.+... ..+.+..++..| +++||.+++-=-+|+...
T Consensus 87 g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~g---------g~~a~~~~~~~l---~~~gd~vl~~~p~~~~~~ 149 (435)
T 3piu_A 87 GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAG---------ATSANETFIFCL---ADPGEAVLIPTPYYPGFD 149 (435)
T ss_dssp CCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEH---------HHHHHHHHHHHH---CCTTCEEEEEESCCTTHH
T ss_pred CcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCC---------hHHHHHHHHHHh---cCCCCeEEECCCccccHH
Confidence 333334456666654334 45667655432 344555555555 468999988777776543
No 111
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=22.76 E-value=2.9e+02 Score=25.22 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHHhccCCC--C-CceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 017524 100 GCINDARCMKYMLTNRFKFP--E-SSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (370)
Q Consensus 100 g~~nDa~~m~~~L~~~~Gf~--~-~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~ 168 (370)
|...=.+.++++|.+.+|.+ + ++|.+ +.. ..+.+..++.-| +++||.|++-=-+|..
T Consensus 79 g~~~l~~~l~~~l~~~~g~~~~~~~~i~~-~~g--------~~~a~~~~~~~l---~~~gd~vl~~~~~~~~ 138 (407)
T 3nra_A 79 GDLGIRDLLAPRLAAFTGAPVDARDGLII-TPG--------TQGALFLAVAAT---VARGDKVAIVQPDYFA 138 (407)
T ss_dssp CCHHHHHHHHHHHHHHHTSCCCTTTSEEE-ESH--------HHHHHHHHHHTT---CCTTCEEEEEESCCTH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCcEEE-eCC--------cHHHHHHHHHHh---CCCCCEEEEcCCcccc
Confidence 43444556778887666764 2 56654 332 344555555544 5689998887666654
No 112
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=22.70 E-value=3e+02 Score=24.94 Aligned_cols=52 Identities=10% Similarity=0.048 Sum_probs=31.6
Q ss_pred HHHHHHHHHhccCC--CCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Q 017524 105 ARCMKYMLTNRFKF--PESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGS 168 (370)
Q Consensus 105 a~~m~~~L~~~~Gf--~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~ 168 (370)
.+.++++|.+.+|+ ++++|.+ +.. +.+.|..+++.+ +++||.+++-=-+|..
T Consensus 75 ~~~la~~l~~~~g~~~~~~~v~~-~~G--------~~~al~~~~~~l---~~~gd~Vl~~~~~y~~ 128 (369)
T 3cq5_A 75 RDELAAYITKQTGVAVTRDNLWA-ANG--------SNEILQQLLQAF---GGPGRTALGFQPSYSM 128 (369)
T ss_dssp HHHHHHHHHHHHCCCCCGGGEEE-ESH--------HHHHHHHHHHHH---CSTTCEEEEEESSCTH
T ss_pred HHHHHHhhhhcccCCCChHhEEE-CCC--------hHHHHHHHHHHh---cCCCCEEEEcCCChHH
Confidence 34567777665554 4566644 432 456666666665 4689988877655543
No 113
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=22.68 E-value=39 Score=22.45 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=20.4
Q ss_pred cccCCCCCCccccCCCCceeeccccCceeec
Q 017524 4 LVDCSKCRTTLQLPPGAQSIRCAICQAITHI 34 (370)
Q Consensus 4 ~~~C~~C~~~l~~p~~a~~~~C~~C~~vt~v 34 (370)
...|..|+..|| +..+|..|...-..
T Consensus 14 pt~C~~C~~~l~-----qG~~C~~C~~~~H~ 39 (52)
T 1faq_A 14 LAFCDICQKFLL-----NGFRCQTCGYKFHE 39 (52)
T ss_dssp CEECTTSSSEEC-----SEEECTTTTCCBCS
T ss_pred CcCCCCcccccc-----cCCEeCCCCCeECh
Confidence 457999999887 78999999855443
No 114
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=22.62 E-value=36 Score=30.06 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=21.0
Q ss_pred cccCCCCCCccccCCCCceeeccccCcee
Q 017524 4 LVDCSKCRTTLQLPPGAQSIRCAICQAIT 32 (370)
Q Consensus 4 ~~~C~~C~~~l~~p~~a~~~~C~~C~~vt 32 (370)
...|..|+..+.. ...+.+|..||.+.
T Consensus 2 ~~~Cp~C~~~~~~--~~~~~~C~~~~~~~ 28 (269)
T 1p91_A 2 SFSCPLCHQPLSR--EKNSYICPQRHQFD 28 (269)
T ss_dssp CBBCTTTCCBCEE--ETTEEECTTCCEEE
T ss_pred cccCCCCCcccee--CCCEEECCCCCcCC
Confidence 4789999998755 33578999999764
No 115
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=22.46 E-value=41 Score=26.35 Aligned_cols=30 Identities=23% Similarity=0.600 Sum_probs=21.0
Q ss_pred CCcccCCCCCCccccCCCCceeeccccCceee
Q 017524 2 LMLVDCSKCRTTLQLPPGAQSIRCAICQAITH 33 (370)
Q Consensus 2 ~~~~~C~~C~~~l~~p~~a~~~~C~~C~~vt~ 33 (370)
.|...|+.|...|.- .| ..+.|..|+.--.
T Consensus 30 ~M~~~CP~Cq~eL~~-~g-~~~hC~~C~~~f~ 59 (101)
T 2jne_A 30 HMELHCPQCQHVLDQ-DN-GHARCRSCGEFIE 59 (101)
T ss_dssp -CCCBCSSSCSBEEE-ET-TEEEETTTCCEEE
T ss_pred cccccCccCCCccee-cC-CEEECccccchhh
Confidence 366889999998753 23 3667999986443
No 116
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=21.92 E-value=56 Score=24.37 Aligned_cols=29 Identities=17% Similarity=0.520 Sum_probs=21.5
Q ss_pred cccCCCCCCccccCCCCceeeccccCcee
Q 017524 4 LVDCSKCRTTLQLPPGAQSIRCAICQAIT 32 (370)
Q Consensus 4 ~~~C~~C~~~l~~p~~a~~~~C~~C~~vt 32 (370)
.+.|+.|+....++.-.-..+|..|+..+
T Consensus 37 ~I~CnDC~~~s~v~~h~lg~kC~~C~SyN 65 (79)
T 2k2d_A 37 DILCNDCNGRSTVQFHILGMKCKICESYN 65 (79)
T ss_dssp EEEESSSCCEEEEECCTTCCCCTTTSCCC
T ss_pred EEECCCCCCCccCCceeecccCcCCCCcC
Confidence 35688888877777766666888888764
No 117
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=21.64 E-value=1.7e+02 Score=27.21 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHHHhccCCC-CCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEE
Q 017524 100 GCINDARCMKYMLTNRFKFP-ESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFH 162 (370)
Q Consensus 100 g~~nDa~~m~~~L~~~~Gf~-~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fy 162 (370)
|...=.+.++++|....+.. .++|.+ +.. ..+.|..+++.| +++||.|++-
T Consensus 80 g~~~lr~~la~~~~~~~~~~~~~~i~~-t~g--------~~~al~~~~~~~---~~~gd~Vl~~ 131 (413)
T 3t18_A 80 GEKDYRKIVIDTLFGPYKPEGYISAIA-TPG--------GTGAIRSAIFSY---LDEGDPLICH 131 (413)
T ss_dssp CCHHHHHHHHHHHHGGGCCSSEEEEEE-ESH--------HHHHHHHHHHHH---CCSSCEEEEE
T ss_pred CCHHHHHHHHHHHhcccCccccCcEEE-cCc--------cHHHHHHHHHHh---cCCCCEEEEC
Confidence 44444556777775443322 114543 432 445565566655 5689988875
No 118
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=20.90 E-value=4.7e+02 Score=25.18 Aligned_cols=89 Identities=7% Similarity=-0.055 Sum_probs=45.1
Q ss_pred HHHHHHHhccCCCCCc--eEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCC-----CCCCCC
Q 017524 107 CMKYMLTNRFKFPESS--IVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHGSQQRNY-----NGEEVD 179 (370)
Q Consensus 107 ~m~~~L~~~~Gf~~~~--I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG~~~~d~-----~gde~d 179 (370)
..++.+.+.+|.+.++ ..++... -+ ..+..++..| ++|||.|++-=-.|+...... .+-+..
T Consensus 94 ~~~~~~a~~~g~~~~~~~~~V~~~s-------Gs-~an~~~~~al---l~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~ 162 (483)
T 1rv3_A 94 LCQKRALQAYGLDPQCWGVNVQPYS-------GS-PANFAVYTAL---VEPHGRIMGLDLPDGGHLTHGFMTDKKKISAT 162 (483)
T ss_dssp HHHHHHHHHTTCCTTTEEEECCCSS-------HH-HHHHHHHHHH---TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHH
T ss_pred HHHHHHHHHhCCCcccCceEEEECC-------cH-HHHHHHHHHh---cCCCCEEEEecCccCcCcchhhhhcccCcccc
Confidence 4457777778877543 2122222 24 4444456555 569999887754555442110 011111
Q ss_pred CcceeEEcccCC-CCCcccHHHHHHhhc
Q 017524 180 GYDETLCPVDFE-TQGMIVDDEINTTLV 206 (370)
Q Consensus 180 G~de~L~p~D~~-~~g~I~ddeL~~~Lv 206 (370)
|..-..+|++.+ .++.|..++|.+.+.
T Consensus 163 G~~~~~v~~~~~~~~~~iD~d~le~~i~ 190 (483)
T 1rv3_A 163 SIFFESMAYKVNPDTGYIDYDRLEENAR 190 (483)
T ss_dssp HHHSEEEEECBCTTTCSBCHHHHHHHHH
T ss_pred cceEEEEECccccCCCcCCHHHHHHHHh
Confidence 211234555443 345677777777664
No 119
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=20.60 E-value=1.5e+02 Score=27.01 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=31.6
Q ss_pred HHHHHHHhccCCCCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 017524 107 CMKYMLTNRFKFPESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHG 167 (370)
Q Consensus 107 ~m~~~L~~~~Gf~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG 167 (370)
.+++.|.+.+|.+.++|.+... +.+.|..++..+ +++||.+++---+|.
T Consensus 69 ~lr~~la~~~~~~~~~v~~~~g---------~~~a~~~~~~~l---~~~gd~vl~~~~~~~ 117 (365)
T 3get_A 69 ELKSTLAQKYKVQNENIIIGAG---------SDQVIEFAIHSK---LNSKNAFLQAGVTFA 117 (365)
T ss_dssp HHHHHHHHHHTCCGGGEEEESS---------HHHHHHHHHHHH---CCTTCEEEECSSCCT
T ss_pred HHHHHHHHHhCCCcceEEECCC---------HHHHHHHHHHHH---hCCCCEEEEeCCChH
Confidence 5677777777887777755432 445566666655 568998887544443
No 120
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=20.58 E-value=4.8e+02 Score=23.69 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhccCC-CCCceEEeccCCCCCCCCchHHHHHHHHHHHHHh-CCCCCEEEEEEecccc
Q 017524 103 NDARCMKYMLTNRFKF-PESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQG-CQPGDSLLFHFSGHGS 168 (370)
Q Consensus 103 nDa~~m~~~L~~~~Gf-~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~-a~~gD~l~fyfSGHG~ 168 (370)
.....+++.|.+.+|. ++++|.+. .. ..+.|..++..+.+. .++||.|++.--+|..
T Consensus 72 ~~~~~l~~~la~~~~~~~~~~v~~~-~g--------~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~ 130 (420)
T 1t3i_A 72 DAYEAVRNKVAKFINARSPREIVYT-RN--------ATEAINLVAYSWGMNNLKAGDEIITTVMEHHS 130 (420)
T ss_dssp HHHHHHHHHHHHHTTCSCGGGEEEE-SS--------HHHHHHHHHHHTHHHHCCTTCEEEEETTCCGG
T ss_pred HHHHHHHHHHHHHcCCCCCCeEEEc-CC--------hHHHHHHHHHHhhhcccCCCCEEEECcchhHH
Confidence 4456788888877787 55666544 32 345566666655322 6789988876555554
No 121
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=20.46 E-value=3.7e+02 Score=24.58 Aligned_cols=56 Identities=9% Similarity=0.039 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHHhccCC--CCCceEEeccCCCCCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Q 017524 100 GCINDARCMKYMLTNRFKF--PESSIVMLTEEDPDPLKRPTKYNMRMALYWLIQGCQPGDSLLFHFSGHG 167 (370)
Q Consensus 100 g~~nDa~~m~~~L~~~~Gf--~~~~I~~Ltd~~~~~~~~pT~~nI~~al~~L~~~a~~gD~l~fyfSGHG 167 (370)
|...=-+.++++|...+|. ++++|.+ +.. ..+.|..++..| +++||.|++-=-+|.
T Consensus 69 g~~~lr~~ia~~~~~~~g~~~~~~~i~~-t~g--------~~~al~~~~~~l---~~~gd~Vlv~~p~y~ 126 (385)
T 1b5p_A 69 GIPELREALAEKFRRENGLSVTPEETIV-TVG--------GSQALFNLFQAI---LDPGDEVIVLSPYWV 126 (385)
T ss_dssp CCHHHHHHHHHHHHHTTCCCCCGGGEEE-ESH--------HHHHHHHHHHHH---CCTTCEEEEEESCCT
T ss_pred CCHHHHHHHHHHHHHHhCCCCChHHEEE-cCC--------hHHHHHHHHHHh---cCCCCEEEEcCCCch
Confidence 4444445678888766674 5667654 431 345555555555 468998887655554
No 122
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=20.35 E-value=3.8e+02 Score=25.37 Aligned_cols=74 Identities=8% Similarity=-0.011 Sum_probs=36.7
Q ss_pred hCCCCCEEEE---EEeccccccCCCCCCCCCCcceeEEcc-cCCCCCcccHHHHHHhhcCcCCCCCeEEEEEcCCCCCCC
Q 017524 152 GCQPGDSLLF---HFSGHGSQQRNYNGEEVDGYDETLCPV-DFETQGMIVDDEINTTLVRPLPRGARLHAIIDACHSGTV 227 (370)
Q Consensus 152 ~a~~gD~l~f---yfSGHG~~~~d~~gde~dG~de~L~p~-D~~~~g~I~ddeL~~~Lv~~l~~g~~l~~IlD~ChSG~~ 227 (370)
.+.+||.|++ .|.+|-...... -+.-|..-..+|+ |.+..+.+.-++|.+.|.+ .+ ...+++++-+||..+.
T Consensus 141 ~~~~gd~Vlv~~p~~~~~~~~~~~~--~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~-~~-~~~~~v~~~~p~NPtG 216 (448)
T 3meb_A 141 LWMPKAEFYMPSTTWPNHYGIYDKV--FNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQS-AP-EKSIFLFHACAHNPSG 216 (448)
T ss_dssp HHCTTCCEEEESSCCTHHHHHHHHH--HCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHH-SC-TTCEEEEESSSCTTTC
T ss_pred HhCCCCEEEECCCCCHhHHHHHHhh--HHhCCCeEEEEeccccccCCCcCHHHHHHHHHh-CC-CCcEEEEeCCCCCCCC
Confidence 3458998888 444443332200 0011333345555 3221245666677766642 11 1345677777776665
Q ss_pred CC
Q 017524 228 LD 229 (370)
Q Consensus 228 ~~ 229 (370)
..
T Consensus 217 ~~ 218 (448)
T 3meb_A 217 ID 218 (448)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 123
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=20.27 E-value=52 Score=23.72 Aligned_cols=25 Identities=16% Similarity=0.467 Sum_probs=18.5
Q ss_pred ccCCCCCCccccCCCCceeeccccCceeec
Q 017524 5 VDCSKCRTTLQLPPGAQSIRCAICQAITHI 34 (370)
Q Consensus 5 ~~C~~C~~~l~~p~~a~~~~C~~C~~vt~v 34 (370)
.+|..|+..+.++ .++| .|..+-=.
T Consensus 16 ~rC~~C~kkvgl~----~f~C-rCg~~FC~ 40 (64)
T 1wg2_A 16 NRCFSCNKKVGVM----GFKC-KCGSTFCG 40 (64)
T ss_dssp CSCTTTCCCCTTS----CEEC-TTSCEECS
T ss_pred CcChhhCCccccc----CeEe-ecCCEecc
Confidence 4799999987665 5889 78866543
No 124
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=20.22 E-value=62 Score=26.89 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=11.3
Q ss_pred HhCCCCCEEEEEEec
Q 017524 151 QGCQPGDSLLFHFSG 165 (370)
Q Consensus 151 ~~a~~gD~l~fyfSG 165 (370)
+..++||.+||| .+
T Consensus 36 r~Mk~GD~~~fY-~~ 49 (147)
T 2p5d_A 36 NKVKVGDKLIIY-EI 49 (147)
T ss_dssp TTCCTTCEEEEE-EC
T ss_pred HhCCCCCEEEEE-Ee
Confidence 357799999999 54
Done!