BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017525
(370 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL----LFEISKVVSLQHLDLSHSR 71
+LR L+L+ N + + F+ + +L L W N L + ++V+L L L ++
Sbjct: 62 KLRLLYLNDNKLQTLPAGIFKELKNLETL-WVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120
Query: 72 IESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
++SLP F L L L+L Y + +P V L L+ LR+Y
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLY 165
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 14 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIE 73
P+L TL +S+N R+ D FQ+ SL+ L+ S + ++S + SL H ++S++ +
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 205
Query: 74 SLPI 77
+L I
Sbjct: 206 TLAI 209
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 14 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIE 73
P+L TL +S+N R+ D FQ+ SL+ L+ S + ++S + SL H ++S++ +
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS 199
Query: 74 SLPI 77
+L I
Sbjct: 200 TLAI 203
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 3 NHIENLVESPVCP--RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVV 60
N+I L S + +LR L +S N ++ F+ L L S++ + V
Sbjct: 31 NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTV 90
Query: 61 SLQHLDLSHSRIESLPI--EFKCLVNLKCLNLEYTY 94
+L+HLDLS + ++LPI EF + LK L L T+
Sbjct: 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH 126
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 58 KVVSLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
K+ +L +L+L+H++++SLP F L NL L+L Y + +P V L L+ LR+Y
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLY 189
Query: 117 E 117
+
Sbjct: 190 Q 190
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 189 VFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLF 248
V ++A L+ ++TL LT ++ V ++G +L+ +Y+ ++ + + L
Sbjct: 100 VSAIAGLQSIKTLDLTST-----------QITDVTPLAGLSNLQVLYLDLNQITNISPLA 148
Query: 249 LAPNLKRVEIDNCQ--DMKEIIDSEKFGEVPAE--VMANLIPFARLERLILEELKN 300
NL+ + I N Q D+ + + K + A+ ++++ P A L LI LKN
Sbjct: 149 GLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKN 204
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 31 NSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN 89
NS A +RVL ++ + +L + +++ + HLDLSH+R+ +LP L L+CL
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP---PALAALRCLE 489
Query: 90 --------LEYTYGISRIP 100
LE G++ +P
Sbjct: 490 VLQASDNALENVDGVANLP 508
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 31 NSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN 89
NS A +RVL ++ + +L + +++ + HLDLSH+R+ +LP L L+CL
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALP---PALAALRCLE 489
Query: 90 --------LEYTYGISRIP 100
LE G++ +P
Sbjct: 490 VLQASDNALENVDGVANLP 508
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 30/118 (25%)
Query: 13 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRI 72
C L+ L L S+ + + D F S+ SL +HLDLS + +
Sbjct: 48 ACANLQVLILKSSRINTIEGDAFYSLGSL---------------------EHLDLSDNHL 86
Query: 73 ESLPIE-FKCLVNLKCLNL----EYTYGISRIPPKVISNLKILETLRMYECAALPQAR 125
SL F L +LK LNL T G++ + P NL L+TLR+ + R
Sbjct: 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP----NLTNLQTLRIGNVETFSEIR 140
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 30/118 (25%)
Query: 13 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRI 72
C L+ L L S+ + + D F S+ SL +HLDLS + +
Sbjct: 74 ACANLQVLILKSSRINTIEGDAFYSLGSL---------------------EHLDLSDNHL 112
Query: 73 ESLPIE-FKCLVNLKCLNL----EYTYGISRIPPKVISNLKILETLRMYECAALPQAR 125
SL F L +LK LNL T G++ + P NL L+TLR+ + R
Sbjct: 113 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP----NLTNLQTLRIGNVETFSEIR 166
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 35/171 (20%)
Query: 167 MPQYVSTPSLCLS-HFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEI 225
+P +ST + L+ H N + + V S LRHL+ LQL+ N + R +EI
Sbjct: 58 VPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI------------RTIEI 105
Query: 226 SGFHSLKN-----VYISR-SKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAE 279
F+ L N ++ +R + + +++L+ LK + + N + E I S F +P+
Sbjct: 106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLS-KLKELWLRN--NPIESIPSYAFNRIPS- 161
Query: 280 VMANLIPFARLERLILEELKNLKTVHSKAL-PFPHLKEMSVDRCPLLKKLP 329
L RL L ELK L + A +L+ +++ C L+++P
Sbjct: 162 ----------LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIP 201
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 61 SLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115
S++HLDLSH + SL F+ L +LK LNL Y I++I + L L+ L +
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNL 321
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLF----EISKVVSLQHLDLSHS 70
P LR L LSSN H ++ F + +L VL Y+N ++ + LQ L LS +
Sbjct: 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL-YNNHIVVVDRNAFEDMAQLQKLYLSQN 146
Query: 71 RIESLPIEF 79
+I P+E
Sbjct: 147 QISRFPVEL 155
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 55 EISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTY 94
EI + +L+ LDLSH+R+ SLP E C L+Y Y
Sbjct: 265 EIKNLSNLRVLDLSHNRLTSLPAELGS-----CFQLKYFY 299
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 17 LRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYS--NPLLFEISKVVSLQHLDLSHSRIES 74
L L+L+ N + ++ +++++LRVL S++ L E+ L++ + + +
Sbjct: 249 LTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT 307
Query: 75 LPIEFKCLVNLKCLNLE 91
LP EF L NL+ L +E
Sbjct: 308 LPWEFGNLCNLQFLGVE 324
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 55 EISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLR 114
E +V+LQ L L + I SLP L NLK L + + +S + P I +L LE L
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGP-AIHHLPKLEELD 235
Query: 115 MYECAAL 121
+ C AL
Sbjct: 236 LRGCTAL 242
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFE---ISKVVSLQHLDLSHSRI 72
RL L LS N + FQ + SLR L ++ E + SL+ L+LSH+ +
Sbjct: 179 RLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Query: 73 ESLP 76
SLP
Sbjct: 239 MSLP 242
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFE---ISKVVSLQHLDLSHSRI 72
RL L LS N + FQ + SLR L ++ E + SL+ L+LSH+ +
Sbjct: 179 RLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Query: 73 ESLP 76
SLP
Sbjct: 239 MSLP 242
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 54 FEISKVVSLQHLDLSHSRIES--LPIEFKCLVNLKCLNLEYTY 94
F I ++++L+ L+++H+ I S LP F L NL ++L Y Y
Sbjct: 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 40 SLRVLKWSYSNPLLFEIS--KVVSLQHLDLSHSRIESLPIEFKCLVNL-KCLNLEYTYGI 96
SLR L S++ ++ + + LQHLD HS ++ + EF ++L K L L+ +Y
Sbjct: 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT-EFSAFLSLEKLLYLDISYTN 435
Query: 97 SRIP-PKVISNLKILETLRM 115
++I + L L TL+M
Sbjct: 436 TKIDFDGIFLGLTSLNTLKM 455
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 54 FEISKVVSLQHLDLSHSRIES--LPIEFKCLVNLKCLNLEYTY 94
F I ++++L+ L+++H+ I S LP F L NL ++L Y Y
Sbjct: 117 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 159
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 40 SLRVLKWSYSNPLLFEIS--KVVSLQHLDLSHSRIESLPIEFKCLVNL-KCLNLEYTYGI 96
SLR L S++ ++ + + LQHLD HS ++ + EF ++L K L L+ +Y
Sbjct: 372 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT-EFSAFLSLEKLLYLDISYTN 430
Query: 97 SRIP-PKVISNLKILETLRM 115
++I + L L TL+M
Sbjct: 431 TKIDFDGIFLGLTSLNTLKM 450
>pdb|3PL5|A Chain A, Fatty Acid Binding Protein
Length = 320
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 13 VCPRLRTLFLSSNIFHRV-------NSDFFQSMASLRVLKWSYSNPLLFEISKV 59
V PRLRT FL N++H + S S+ +++ L W ++ L I+K+
Sbjct: 189 VGPRLRTFFLVDNLYHLMRGGRLSKTSAIVGSLVNIKPLLWLDASGKLVPIAKL 242
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 15 PRLRTLFLSSNIFHRVN---SDFFQSMASLRVLKWSYSNPLLFEISKVVSLQ---HLDLS 68
P L+ L L N F + N ++ Q++ L +L S+ + + SL+ H+DLS
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508
Query: 69 HSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVI 104
H+R+ S IE + LNL + IS I P ++
Sbjct: 509 HNRLTSSSIEALSHLKGIYLNLASNH-ISIILPSLL 543
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 56 ISKVVSLQHLDLSHSRIES---LPIEFKCLVNLKCLNLEY 92
+ K+ +LQ LDLSHS IE+ ++ K L +L+ LNL Y
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSY 384
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced
By Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 14 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYS 49
C L+ L L+SN + + D F S+ SL L SY+
Sbjct: 49 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 84
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 22/78 (28%)
Query: 14 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIE 73
C L+ L L+SN + + D F S+ SL+HLDLS++ +
Sbjct: 75 CVNLQALVLTSNGINTIEEDSFSSLG---------------------SLEHLDLSYNYLS 113
Query: 74 SLPIE-FKCLVNLKCLNL 90
+L FK L +L LNL
Sbjct: 114 NLSSSWFKPLSSLTFLNL 131
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 169 QYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGF 228
Q + TP L F N ++ + ++ +L H+ + L D+ E G +K +I+ F
Sbjct: 79 QIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISE---QCGLTIKE--QINLF 133
Query: 229 HSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEK 272
+S+K+V+ ++S + N+ + IDN +K+I+D+ K
Sbjct: 134 YSIKSVFSNKSIVIGFNKID-KCNMDSLSIDNKLLIKQILDNVK 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,092,656
Number of Sequences: 62578
Number of extensions: 388256
Number of successful extensions: 1203
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1141
Number of HSP's gapped (non-prelim): 104
length of query: 370
length of database: 14,973,337
effective HSP length: 100
effective length of query: 270
effective length of database: 8,715,537
effective search space: 2353194990
effective search space used: 2353194990
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)