Query 017525
Match_columns 370
No_of_seqs 167 out of 2525
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 09:21:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 2.9E-22 6.3E-27 207.1 15.0 301 3-323 103-439 (968)
2 KOG4194 Membrane glycoprotein 99.9 7.2E-24 1.6E-28 192.2 2.4 318 2-356 111-465 (873)
3 PLN03210 Resistant to P. syrin 99.9 2E-21 4.4E-26 201.9 18.2 296 3-332 599-913 (1153)
4 PLN00113 leucine-rich repeat r 99.9 1E-21 2.3E-26 203.0 15.8 290 12-332 137-472 (968)
5 KOG4194 Membrane glycoprotein 99.9 1E-23 2.2E-28 191.2 -1.5 264 15-320 173-447 (873)
6 KOG4658 Apoptotic ATPase [Sign 99.8 4E-21 8.8E-26 190.8 7.9 342 1-363 531-883 (889)
7 KOG0444 Cytoskeletal regulator 99.8 9.2E-23 2E-27 186.6 -4.7 292 3-327 65-377 (1255)
8 KOG0444 Cytoskeletal regulator 99.8 7.7E-23 1.7E-27 187.1 -7.6 285 6-335 45-361 (1255)
9 PLN03210 Resistant to P. syrin 99.8 1E-18 2.3E-23 181.7 17.0 286 12-336 555-893 (1153)
10 KOG0472 Leucine-rich repeat pr 99.8 4.2E-21 9.1E-26 167.2 -6.2 291 2-323 192-539 (565)
11 KOG0472 Leucine-rich repeat pr 99.7 1.9E-19 4.1E-24 157.0 -8.1 249 3-299 55-308 (565)
12 PRK15387 E3 ubiquitin-protein 99.6 1.7E-15 3.6E-20 148.1 13.9 244 3-323 211-456 (788)
13 KOG0618 Serine/threonine phosp 99.6 1.1E-17 2.5E-22 159.6 -4.2 106 15-125 219-326 (1081)
14 KOG0618 Serine/threonine phosp 99.6 7.3E-17 1.6E-21 154.2 -0.1 271 3-319 229-504 (1081)
15 KOG4237 Extracellular matrix p 99.6 1.3E-17 2.9E-22 145.3 -5.8 258 4-297 57-355 (498)
16 KOG0617 Ras suppressor protein 99.6 2.6E-17 5.7E-22 127.8 -4.5 164 5-212 23-189 (264)
17 KOG4237 Extracellular matrix p 99.6 4.7E-17 1E-21 141.8 -4.0 264 21-319 52-353 (498)
18 PRK15387 E3 ubiquitin-protein 99.6 9E-15 2E-19 143.1 11.2 224 2-299 231-456 (788)
19 PRK15370 E3 ubiquitin-protein 99.6 1.6E-14 3.5E-19 142.0 10.5 54 196-262 325-378 (754)
20 PRK15370 E3 ubiquitin-protein 99.5 8.8E-14 1.9E-18 136.8 9.0 237 3-299 188-426 (754)
21 KOG0617 Ras suppressor protein 99.5 1E-15 2.2E-20 119.1 -4.3 142 2-159 42-188 (264)
22 cd00116 LRR_RI Leucine-rich re 99.4 5.4E-14 1.2E-18 127.4 1.3 253 20-298 3-288 (319)
23 cd00116 LRR_RI Leucine-rich re 99.3 7.4E-13 1.6E-17 119.9 4.9 261 12-298 20-317 (319)
24 KOG4658 Apoptotic ATPase [Sign 99.3 3.6E-12 7.8E-17 127.5 5.9 256 7-307 515-789 (889)
25 KOG4341 F-box protein containi 99.3 1.4E-13 3E-18 121.3 -5.0 263 40-332 139-421 (483)
26 PF14580 LRR_9: Leucine-rich r 99.2 2.8E-11 6E-16 97.9 4.7 138 3-152 7-148 (175)
27 KOG1909 Ran GTPase-activating 99.2 4.2E-12 9.2E-17 109.7 -0.7 241 12-299 27-309 (382)
28 KOG4341 F-box protein containi 99.1 1.7E-12 3.8E-17 114.5 -3.5 291 15-332 138-446 (483)
29 KOG0532 Leucine-rich repeat (L 99.1 1E-11 2.2E-16 113.7 -2.3 200 5-261 62-270 (722)
30 KOG3207 Beta-tubulin folding c 99.0 2.7E-11 5.9E-16 107.6 -0.2 88 173-263 248-338 (505)
31 KOG1259 Nischarin, modulator o 99.0 1.4E-10 3E-15 98.6 3.3 213 55-299 177-410 (490)
32 KOG3207 Beta-tubulin folding c 99.0 5.6E-11 1.2E-15 105.6 -1.0 215 6-242 111-339 (505)
33 PF14580 LRR_9: Leucine-rich r 98.9 1.3E-09 2.9E-14 88.1 5.4 113 2-117 28-149 (175)
34 COG4886 Leucine-rich repeat (L 98.9 2E-09 4.4E-14 100.4 6.5 175 36-264 113-290 (394)
35 KOG1259 Nischarin, modulator o 98.9 1.9E-10 4E-15 97.8 -0.9 133 12-159 281-414 (490)
36 COG4886 Leucine-rich repeat (L 98.9 1.3E-09 2.7E-14 101.8 4.3 178 11-244 112-292 (394)
37 KOG2120 SCF ubiquitin ligase, 98.9 3.6E-11 7.9E-16 101.9 -5.6 183 108-323 185-374 (419)
38 KOG0532 Leucine-rich repeat (L 98.8 1.7E-10 3.7E-15 105.9 -4.9 142 2-161 84-228 (722)
39 KOG2120 SCF ubiquitin ligase, 98.7 2.4E-10 5.2E-15 97.0 -5.8 61 226-298 310-373 (419)
40 PF13855 LRR_8: Leucine rich r 98.7 1.2E-08 2.6E-13 67.8 3.2 58 15-72 1-61 (61)
41 KOG1909 Ran GTPase-activating 98.7 3.1E-09 6.6E-14 92.3 0.3 251 35-323 26-309 (382)
42 PF13855 LRR_8: Leucine rich r 98.6 3.1E-08 6.7E-13 65.8 3.7 58 60-118 1-59 (61)
43 COG5238 RNA1 Ran GTPase-activa 98.5 1.6E-08 3.5E-13 85.0 0.3 243 13-298 28-313 (388)
44 PLN03150 hypothetical protein; 98.5 2.7E-07 5.8E-12 90.7 8.6 103 17-121 420-528 (623)
45 KOG0531 Protein phosphatase 1, 98.5 1.1E-08 2.4E-13 95.8 -1.2 214 14-262 71-288 (414)
46 KOG2982 Uncharacterized conser 98.3 3.9E-07 8.5E-12 77.8 3.1 219 19-259 49-287 (418)
47 KOG0531 Protein phosphatase 1, 98.3 1.1E-07 2.4E-12 89.2 -1.0 192 36-263 69-267 (414)
48 PLN03150 hypothetical protein; 98.2 2.4E-06 5.2E-11 84.0 7.6 80 41-122 420-503 (623)
49 KOG3665 ZYG-1-like serine/thre 98.1 1.9E-06 4.2E-11 84.7 3.1 137 14-157 121-263 (699)
50 KOG1859 Leucine-rich repeat pr 98.1 1.1E-07 2.3E-12 90.3 -5.9 129 12-156 161-291 (1096)
51 PF12799 LRR_4: Leucine Rich r 98.0 5.8E-06 1.3E-10 50.4 3.3 34 60-93 1-34 (44)
52 KOG2982 Uncharacterized conser 98.0 3.2E-06 6.9E-11 72.4 2.6 210 12-236 68-286 (418)
53 KOG1859 Leucine-rich repeat pr 98.0 2.8E-07 6.2E-12 87.5 -4.9 128 143-299 163-290 (1096)
54 PF12799 LRR_4: Leucine Rich r 97.9 2E-05 4.3E-10 48.1 3.6 36 40-75 2-39 (44)
55 KOG1644 U2-associated snRNP A' 97.8 2.2E-05 4.7E-10 63.6 4.2 89 191-298 59-150 (233)
56 KOG1644 U2-associated snRNP A' 97.8 4E-05 8.7E-10 62.2 5.3 101 15-118 42-150 (233)
57 PRK15386 type III secretion pr 97.8 0.00019 4.1E-09 65.7 9.7 54 59-118 51-104 (426)
58 KOG3665 ZYG-1-like serine/thre 97.6 4.1E-05 9E-10 75.5 3.8 110 12-122 145-263 (699)
59 KOG2123 Uncharacterized conser 97.6 3.8E-06 8.1E-11 71.3 -3.9 101 12-114 16-123 (388)
60 KOG1947 Leucine rich repeat pr 97.6 9.1E-06 2E-10 77.9 -2.0 41 289-329 402-444 (482)
61 KOG1947 Leucine rich repeat pr 97.5 9.3E-06 2E-10 77.8 -2.7 41 253-304 403-443 (482)
62 KOG4579 Leucine-rich repeat (L 97.4 2.6E-05 5.7E-10 59.2 -0.9 89 12-101 50-140 (177)
63 PRK15386 type III secretion pr 97.3 0.0006 1.3E-08 62.5 7.0 68 13-92 50-121 (426)
64 KOG4579 Leucine-rich repeat (L 97.2 7E-05 1.5E-09 57.0 -0.1 111 12-125 24-139 (177)
65 COG5238 RNA1 Ran GTPase-activa 97.1 0.00026 5.7E-09 60.2 2.2 219 13-244 56-318 (388)
66 KOG2739 Leucine-rich acidic nu 97.1 0.00018 3.8E-09 60.9 0.6 57 37-93 63-126 (260)
67 PF13306 LRR_5: Leucine rich r 97.0 0.0018 3.9E-08 49.9 5.8 101 12-117 9-112 (129)
68 KOG2123 Uncharacterized conser 96.8 4.5E-05 9.8E-10 64.9 -4.9 61 191-262 36-99 (388)
69 PF13306 LRR_5: Leucine rich r 96.7 0.0038 8.3E-08 48.0 5.2 103 4-111 22-129 (129)
70 KOG3864 Uncharacterized conser 96.5 0.00025 5.4E-09 57.7 -2.2 85 198-303 103-191 (221)
71 KOG2739 Leucine-rich acidic nu 96.2 0.0031 6.7E-08 53.5 2.6 89 4-93 54-153 (260)
72 PF00560 LRR_1: Leucine Rich R 96.1 0.0025 5.4E-08 32.3 0.8 20 61-80 1-20 (22)
73 KOG3864 Uncharacterized conser 95.7 0.0011 2.4E-08 54.0 -2.3 87 230-327 102-191 (221)
74 PF13504 LRR_7: Leucine rich r 95.3 0.01 2.3E-07 27.8 1.3 17 60-76 1-17 (17)
75 PF00560 LRR_1: Leucine Rich R 93.9 0.016 3.6E-07 29.2 0.1 18 16-33 1-18 (22)
76 smart00369 LRR_TYP Leucine-ric 93.0 0.11 2.4E-06 27.2 2.4 23 14-36 1-23 (26)
77 smart00370 LRR Leucine-rich re 93.0 0.11 2.4E-06 27.2 2.4 23 14-36 1-23 (26)
78 KOG0473 Leucine-rich repeat pr 92.7 0.005 1.1E-07 51.4 -4.7 82 35-118 38-121 (326)
79 smart00369 LRR_TYP Leucine-ric 90.3 0.24 5.2E-06 25.9 1.8 20 59-78 1-20 (26)
80 smart00370 LRR Leucine-rich re 90.3 0.24 5.2E-06 25.9 1.8 20 59-78 1-20 (26)
81 KOG0473 Leucine-rich repeat pr 88.9 0.021 4.6E-07 47.8 -4.4 91 6-97 31-125 (326)
82 smart00367 LRR_CC Leucine-rich 88.0 0.33 7.2E-06 25.4 1.3 17 311-327 1-17 (26)
83 KOG3763 mRNA export factor TAP 83.7 0.23 5E-06 47.0 -1.1 63 195-265 217-284 (585)
84 smart00364 LRR_BAC Leucine-ric 82.2 0.95 2E-05 23.8 1.3 18 60-77 2-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 77.9 1.9 4.1E-05 22.7 1.6 16 60-75 2-17 (26)
86 PF13516 LRR_6: Leucine Rich r 77.0 1.4 3.1E-05 22.4 1.0 13 60-72 2-14 (24)
87 KOG4308 LRR-containing protein 69.5 0.048 1E-06 51.9 -10.0 186 17-210 89-304 (478)
88 KOG3763 mRNA export factor TAP 66.3 2.5 5.5E-05 40.3 0.8 84 226-320 215-309 (585)
89 smart00368 LRR_RI Leucine rich 60.9 7.1 0.00015 20.7 1.6 14 60-73 2-15 (28)
90 KOG4308 LRR-containing protein 22.9 5.1 0.00011 38.4 -4.9 109 12-122 169-303 (478)
91 TIGR00864 PCC polycystin catio 21.5 73 0.0016 37.3 2.7 30 21-50 1-30 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=2.9e-22 Score=207.12 Aligned_cols=301 Identities=19% Similarity=0.182 Sum_probs=135.8
Q ss_pred cccc-cccCC--CCCCCCCEEecCCCcCCC-CChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCccc-c
Q 017525 3 NHIE-NLVES--PVCPRLRTLFLSSNIFHR-VNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIE-S 74 (370)
Q Consensus 3 n~l~-~l~~~--~~l~~L~~L~l~~~~i~~-~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~-~ 74 (370)
|.+. .+|.. ..+++|++|++++|.+.. +|. ..+++|++|++++|. .+|..++++++|++|++++|.+. .
T Consensus 103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 179 (968)
T PLN00113 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179 (968)
T ss_pred CccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence 3443 44443 256666666666665542 222 345555555555554 34555555555555555555543 4
Q ss_pred cCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCc-ccccccc------------cCCcchhhhhcc
Q 017525 75 LPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALP-QARDSIL------------FGDCRVLVEELL 141 (370)
Q Consensus 75 lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~------------~~~~~~~~~~l~ 141 (370)
+|..++++++|++|++++|...+.+|.. ++++++|++|++++| .+. .+|..+. .......+..+.
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYN-NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCC-ccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence 4445555555555555555433444443 555555555555555 332 1110000 000001223344
Q ss_pred cCCCccEEEEEecchhh-hH-hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCc
Q 017525 142 GLEHLSVFTITLNNFHA-FQ-RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEV 219 (370)
Q Consensus 142 ~l~~L~~l~l~~~~~~~-~~-~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 219 (370)
.+++|+.|++..+.... .+ .+.... +|+.+++.++.-.... ...+..+++|+.|++++|.+.......+
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~-----~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~l~~n~~~~~~~~~~--- 328 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQ-----KLISLDLSDNSLSGEI-PELVIQLQNLEILHLFSNNFTGKIPVAL--- 328 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhcc-----CcCEEECcCCeeccCC-ChhHcCCCCCcEEECCCCccCCcCChhH---
Confidence 44555555554443321 11 111111 2444444433211111 1133445555666655555443222111
Q ss_pred cccccccccccCcEEEEecccccc-c-CcccCCCCccEEeeccCcchHHhhhcc-cc----------CCCcccccCCccc
Q 017525 220 KRVLEISGFHSLKNVYISRSKFRH-A-TWLFLAPNLKRVEIDNCQDMKEIIDSE-KF----------GEVPAEVMANLIP 286 (370)
Q Consensus 220 ~~~~~~~~~~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~ 286 (370)
..+++|+.|++++|++++ + ..++.+++|+.|++++|.....+...- .. .......+..+..
T Consensus 329 ------~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 402 (968)
T PLN00113 329 ------TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402 (968)
T ss_pred ------hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence 345666666666665543 2 235556666666666665332211100 00 0000012234455
Q ss_pred cccccccccccccccccccCCCccCCCcceEeecCCC
Q 017525 287 FARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCP 323 (370)
Q Consensus 287 ~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~ 323 (370)
+++|+.|++++|.--..++.....++.|+.|+++++.
T Consensus 403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 6666666666664323333334456677777776653
No 2
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=7.2e-24 Score=192.20 Aligned_cols=318 Identities=18% Similarity=0.253 Sum_probs=184.6
Q ss_pred CcccccccCCCC-CCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchh-hhhccccCCEEeccCCcccccCc
Q 017525 2 TNHIENLVESPV-CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLF-EISKVVSLQHLDLSHSRIESLPI 77 (370)
Q Consensus 2 ~n~l~~l~~~~~-l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~-~~~~l~~L~~L~l~~~~l~~lp~ 77 (370)
+|+++.+|..+. ..+|+.|+|.+|.|+.+....++.++.|+.||||.|. ++|. .+..-.++++|+|++|.|+.+..
T Consensus 111 ~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~ 190 (873)
T KOG4194|consen 111 KNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLET 190 (873)
T ss_pred cchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccc
Confidence 477888888744 4558888888888888877768888888888888887 4442 34444678888888888887655
Q ss_pred -ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch
Q 017525 78 -EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF 156 (370)
Q Consensus 78 -~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 156 (370)
.+..+.+|..|.+++| .++.+|..+|.++++|+.|++..| .+..+. ...+..+.+|+.+.+..|++
T Consensus 191 ~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN-~irive-----------~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 191 GHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRN-RIRIVE-----------GLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred ccccccchheeeecccC-cccccCHHHhhhcchhhhhhcccc-ceeeeh-----------hhhhcCchhhhhhhhhhcCc
Confidence 4667778888888888 677788777888888888888888 665332 12233444444444444443
Q ss_pred hhhHh--hhcCCCCCccc-------------------cCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceecc
Q 017525 157 HAFQR--LLGSCMPQYVS-------------------TPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDN 215 (370)
Q Consensus 157 ~~~~~--~~~~~~~~~l~-------------------L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 215 (370)
..+.+ +..+.++..++ |+.|+++.. .+.......++-++.|+.|+|+.|.++.++...
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~s 336 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGS 336 (873)
T ss_pred ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEeccccccccCChhH
Confidence 33221 11111111111 222222111 111111123344445555555555555544333
Q ss_pred CCCccccccccccccCcEEEEecccccccC--cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccc
Q 017525 216 GGEVKRVLEISGFHSLKNVYISRSKFRHAT--WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERL 293 (370)
Q Consensus 216 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L 293 (370)
+ ..+..|++|+|++|+++.+. .+..+.+|++|+|++|.. ...+++ ....+.++|+|+.|
T Consensus 337 f---------~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l-s~~IED---------aa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 337 F---------RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL-SWCIED---------AAVAFNGLPSLRKL 397 (873)
T ss_pred H---------HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE-EEEEec---------chhhhccchhhhhe
Confidence 2 34555555555555554442 344566666666666542 222111 12356678899999
Q ss_pred ccccccccccccCCC-ccCCCcceEeecCCCCCCCCCCCCCCCC-------ccee-EEechHhhhhhcccCc
Q 017525 294 ILEELKNLKTVHSKA-LPFPHLKEMSVDRCPLLKKLPLDCNRGL-------ERKI-VIKGQRRWWNELQWDD 356 (370)
Q Consensus 294 ~l~~~~~l~~i~~~~-~~~~~L~~L~l~~c~~L~~l~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~ 356 (370)
.+.++ +++.|+-.+ .+++.||.|++.+.+ +.++..+..... .+.+ +=+|+..|+ .+|-.
T Consensus 398 ~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl--~qWl~ 465 (873)
T KOG4194|consen 398 RLTGN-QLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMELKELVMNSSSFLCDCQLKWL--AQWLY 465 (873)
T ss_pred eecCc-eeeecchhhhccCcccceecCCCCc-ceeecccccccchhhhhhhcccceEEeccHHHH--HHHHH
Confidence 98887 677776543 358888888887764 444444433322 1111 123677777 55543
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=2e-21 Score=201.88 Aligned_cols=296 Identities=19% Similarity=0.219 Sum_probs=188.3
Q ss_pred cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCC-cccccCcc
Q 017525 3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHS-RIESLPIE 78 (370)
Q Consensus 3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~-~l~~lp~~ 78 (370)
+.++.+|....+.+|+.|++.++.+..++.. +..+++|++|+++++. .+| .++.+++|++|++++| .+..+|..
T Consensus 599 ~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s 676 (1153)
T PLN03210 599 YPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS 676 (1153)
T ss_pred CCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh
Confidence 4456667666678888888888888777766 5778888888888776 455 4777888888888887 45678888
Q ss_pred cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhh
Q 017525 79 FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHA 158 (370)
Q Consensus 79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~ 158 (370)
++.+++|+.|++++|..+..+|.. + ++++|+.|++++|..+..+| ....+|+.|++..+.+..
T Consensus 677 i~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p---------------~~~~nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFP---------------DISTNISWLDLDETAIEE 739 (1153)
T ss_pred hhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccc---------------cccCCcCeeecCCCcccc
Confidence 888888888888888777778775 3 78888888888874333222 113567777777776655
Q ss_pred hHhhhcCCCCCccccCcEEecCcCCCCc------cccccccccCCCcEEEEecCC-cccceeccCCCccccccccccccC
Q 017525 159 FQRLLGSCMPQYVSTPSLCLSHFNNSKS------LGVFSLASLRHLQTLQLTYND-LDEIKIDNGGEVKRVLEISGFHSL 231 (370)
Q Consensus 159 ~~~~~~~~~~~~l~L~~l~l~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~~~~~L 231 (370)
++......+ |..|.+..+..... ........+++|+.|++++|. +..++..+ ..+++|
T Consensus 740 lP~~~~l~~-----L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si----------~~L~~L 804 (1153)
T PLN03210 740 FPSNLRLEN-----LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI----------QNLHKL 804 (1153)
T ss_pred ccccccccc-----cccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhh----------hCCCCC
Confidence 543322222 33333333211000 000011123466666666642 33343322 456666
Q ss_pred cEEEEecc-cccccCcccCCCCccEEeeccCcchHHhhhcc-cc-----C-CCcccccCCcccccccccccccccccccc
Q 017525 232 KNVYISRS-KFRHATWLFLAPNLKRVEIDNCQDMKEIIDSE-KF-----G-EVPAEVMANLIPFARLERLILEELKNLKT 303 (370)
Q Consensus 232 ~~L~l~~~-~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~-----~-~~~~~~~~~~~~~p~L~~L~l~~~~~l~~ 303 (370)
+.|++++| .++.++....+++|+.|++++|..+...+... +. . ..-..+|..+..+++|+.|++++|.+++.
T Consensus 805 ~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 805 EHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred CEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc
Confidence 66666666 55555544456666666666665544322100 00 0 00001344677899999999999999999
Q ss_pred ccCCCccCCCcceEeecCCCCCCCCCCCC
Q 017525 304 VHSKALPFPHLKEMSVDRCPLLKKLPLDC 332 (370)
Q Consensus 304 i~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 332 (370)
++.....+++|+.+++.+|++|+.+++..
T Consensus 885 l~~~~~~L~~L~~L~l~~C~~L~~~~l~~ 913 (1153)
T PLN03210 885 VSLNISKLKHLETVDFSDCGALTEASWNG 913 (1153)
T ss_pred cCcccccccCCCeeecCCCcccccccCCC
Confidence 98877789999999999999998877643
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=1e-21 Score=203.02 Aligned_cols=290 Identities=22% Similarity=0.245 Sum_probs=165.5
Q ss_pred CCCCCCCEEecCCCcCCC-CChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCccc-ccCcccccCCccc
Q 017525 12 PVCPRLRTLFLSSNIFHR-VNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIE-SLPIEFKCLVNLK 86 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~-~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~ 86 (370)
..+++|++|++++|.+.. +|.. ++++++|++|++++|. .+|..++++++|++|++++|.+. .+|..++.+++|+
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred cccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 456677777777776653 3433 6667777777777665 55666666777777777766654 4555666666666
Q ss_pred EEeccCcccccccCcccccCCCCCcEEEccccCCCc-ccccccc------------cCCcchhhhhcccCCCccEEEEEe
Q 017525 87 CLNLEYTYGISRIPPKVISNLKILETLRMYECAALP-QARDSIL------------FGDCRVLVEELLGLEHLSVFTITL 153 (370)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~------------~~~~~~~~~~l~~l~~L~~l~l~~ 153 (370)
+|++++|...+.+|.. ++++++|++|++.+| .+. .+|..+. .......+..+..+++|+.|+++.
T Consensus 216 ~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 216 WIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred EEECcCCccCCcCChh-HhcCCCCCEEECcCc-eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence 6666666444455544 566666666666665 332 2221100 001112344566677888888887
Q ss_pred cchhh-hHhh-hcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccC
Q 017525 154 NNFHA-FQRL-LGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSL 231 (370)
Q Consensus 154 ~~~~~-~~~~-~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L 231 (370)
|.... ++.. .... +|+.+.+.++.-.... ...+..+++|+.|++++|.+.......+ ..+++|
T Consensus 294 n~l~~~~p~~~~~l~-----~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~l---------~~~~~L 358 (968)
T PLN00113 294 NSLSGEIPELVIQLQ-----NLEILHLFSNNFTGKI-PVALTSLPRLQVLQLWSNKFSGEIPKNL---------GKHNNL 358 (968)
T ss_pred CeeccCCChhHcCCC-----CCcEEECCCCccCCcC-ChhHhcCCCCCEEECcCCCCcCcCChHH---------hCCCCC
Confidence 76542 2221 2222 3555665544322111 1245566777777777766653221111 234445
Q ss_pred cEEEEeccc------------------------cccc--CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcc
Q 017525 232 KNVYISRSK------------------------FRHA--TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLI 285 (370)
Q Consensus 232 ~~L~l~~~~------------------------l~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (370)
+.|++++|+ +++. ..++.+++|+.|++++|..... .+..+.
T Consensus 359 ~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~-------------~p~~~~ 425 (968)
T PLN00113 359 TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE-------------LPSEFT 425 (968)
T ss_pred cEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE-------------CChhHh
Confidence 555554443 3321 2344556666666666653222 234677
Q ss_pred ccccccccccccccccccccCCCccCCCcceEeecCCCCCCCCCCCC
Q 017525 286 PFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDC 332 (370)
Q Consensus 286 ~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 332 (370)
.+++|+.|+++++.-...++.....+++|+.|++.+|.-...+|...
T Consensus 426 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~ 472 (968)
T PLN00113 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472 (968)
T ss_pred cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc
Confidence 89999999999985333444444568999999999997666666543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=1e-23 Score=191.24 Aligned_cols=264 Identities=24% Similarity=0.312 Sum_probs=172.6
Q ss_pred CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCccccc-CcccccCCcccEEec
Q 017525 15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESL-PIEFKCLVNLKCLNL 90 (370)
Q Consensus 15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l 90 (370)
.+++.|+|++|.|+.+....|.++.+|-+|.|+.|. .+| ..|.++++|+.|+|..|.|..+ ...+..+++|+.|.+
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 445555555555555544445555555555555555 333 2334456666666666555433 124555666666666
Q ss_pred cCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH--hhhcCCCC
Q 017525 91 EYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ--RLLGSCMP 168 (370)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~ 168 (370)
..| .+..+..++|.+|.++++|++..| .+..+ .-+.+.+++.|+.|+++.|.+..+. .+....
T Consensus 253 qrN-~I~kL~DG~Fy~l~kme~l~L~~N-~l~~v-----------n~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq-- 317 (873)
T KOG4194|consen 253 QRN-DISKLDDGAFYGLEKMEHLNLETN-RLQAV-----------NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ-- 317 (873)
T ss_pred hhc-CcccccCcceeeecccceeecccc-hhhhh-----------hcccccccchhhhhccchhhhheeecchhhhcc--
Confidence 665 455566666777777777777777 55532 2345667888999999998876543 233333
Q ss_pred CccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccc----c
Q 017525 169 QYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRH----A 244 (370)
Q Consensus 169 ~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~----~ 244 (370)
.|..|+++. +.++..+..++..++.|+.|+|++|.++.+....+ ..+++|++|+|++|.++. .
T Consensus 318 ---kL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af---------~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 318 ---KLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF---------VGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred ---cceeEeccc-cccccCChhHHHHHHHhhhhcccccchHHHHhhHH---------HHhhhhhhhcCcCCeEEEEEecc
Confidence 366666654 33344434577788999999999999999876544 678999999999995432 1
Q ss_pred -CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeec
Q 017525 245 -TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVD 320 (370)
Q Consensus 245 -~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~ 320 (370)
..+.+++.|+.|.+.+|+ ++.+.. ..+.+++.|++|++.++ -+..|.+.++.--.|++|.+.
T Consensus 385 a~~f~gl~~LrkL~l~gNq-lk~I~k------------rAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTGNQ-LKSIPK------------RAFSGLEALEHLDLGDN-AIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred hhhhccchhhhheeecCce-eeecch------------hhhccCcccceecCCCC-cceeecccccccchhhhhhhc
Confidence 246679999999999987 555543 47789999999999887 466776655433367777663
No 6
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.83 E-value=4e-21 Score=190.78 Aligned_cols=342 Identities=32% Similarity=0.474 Sum_probs=254.5
Q ss_pred CCcccccccCCCCCCCCCEEecCCCc--CCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCccccc
Q 017525 1 MTNHIENLVESPVCPRLRTLFLSSNI--FHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESL 75 (370)
Q Consensus 1 ~~n~l~~l~~~~~l~~L~~L~l~~~~--i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~l 75 (370)
|+|.+..++....++.|++|-+.+|. +..++..+|..++.|++||+++|. .+|..++.+.+||||+++++.+..+
T Consensus 531 ~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L 610 (889)
T KOG4658|consen 531 MNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL 610 (889)
T ss_pred eccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc
Confidence 56778888888888899999999995 788888889999999999999987 8999999999999999999999999
Q ss_pred CcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecc
Q 017525 76 PIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNN 155 (370)
Q Consensus 76 p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~ 155 (370)
|..++++.+|.+|++..+......+ ++...|.+|++|.+... ... .+.....++..+++|+.+.+....
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s-~~~---------~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRS-ALS---------NDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred chHHHHHHhhheecccccccccccc-chhhhcccccEEEeecc-ccc---------cchhhHHhhhcccchhhheeecch
Confidence 9999999999999999986655554 44777999999999766 322 123567778888888888887666
Q ss_pred hhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCcccccccc-ccccCcEE
Q 017525 156 FHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEIS-GFHSLKNV 234 (370)
Q Consensus 156 ~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-~~~~L~~L 234 (370)
......+..+..+.. ....+.+..+...+. ...+..+++|+.|.+.++...+....+...... . .|+++..+
T Consensus 680 ~~~~e~l~~~~~L~~-~~~~l~~~~~~~~~~--~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~----~~~f~~l~~~ 752 (889)
T KOG4658|consen 680 VLLLEDLLGMTRLRS-LLQSLSIEGCSKRTL--ISSLGSLGNLEELSILDCGISEIVIEWEESLIV----LLCFPNLSKV 752 (889)
T ss_pred hHhHhhhhhhHHHHH-HhHhhhhccccccee--ecccccccCcceEEEEcCCCchhhcccccccch----hhhHHHHHHH
Confidence 533444433333322 222333322222222 346778899999999997776554433222111 2 26788888
Q ss_pred EEecc-cccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccc-ccccccccccccCCCccCC
Q 017525 235 YISRS-KFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERL-ILEELKNLKTVHSKALPFP 312 (370)
Q Consensus 235 ~l~~~-~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L-~l~~~~~l~~i~~~~~~~~ 312 (370)
.+.+| ...++.|....|+|+.|.+.+|..++++++........ ......|+++..+ .+.+.+.++.+......++
T Consensus 753 ~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l---~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~ 829 (889)
T KOG4658|consen 753 SILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL---KELILPFNKLEGLRMLCSLGGLPQLYWLPLSFL 829 (889)
T ss_pred HhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhc---ccEEecccccccceeeecCCCCceeEecccCcc
Confidence 88888 77888888889999999999999999887643332211 1124456666677 4666677777766666788
Q ss_pred CcceEeecCCCCCCCCCCCCCCCC-c--ceeEEechHhhhhhcccCchhhhhhh
Q 017525 313 HLKEMSVDRCPLLKKLPLDCNRGL-E--RKIVIKGQRRWWNELQWDDEATQNAF 363 (370)
Q Consensus 313 ~L~~L~l~~c~~L~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (370)
.|+.+.+..||++..+|....... . .......+.+|.+...|.++..+..|
T Consensus 830 ~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 830 KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred chhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 899999999999999999864444 2 34445568889999999999988776
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=9.2e-23 Score=186.62 Aligned_cols=292 Identities=23% Similarity=0.291 Sum_probs=169.4
Q ss_pred cccccccCC-CCCCCCCEEecCCCcCC--CCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCc
Q 017525 3 NHIENLVES-PVCPRLRTLFLSSNIFH--RVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPI 77 (370)
Q Consensus 3 n~l~~l~~~-~~l~~L~~L~l~~~~i~--~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~ 77 (370)
|+++.+... +++|.||.+.+.+|+++ .+|.+ +-.+..|.+|+||.|+ +.|..+.+.+++-+|++++|+|.++|.
T Consensus 65 N~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn 143 (1255)
T KOG0444|consen 65 NQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPN 143 (1255)
T ss_pred hhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCc
Confidence 344444443 56666666666666554 56666 5566666666666666 666666666666666666666666665
Q ss_pred c-cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch
Q 017525 78 E-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF 156 (370)
Q Consensus 78 ~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 156 (370)
. +.+++.|-.||+++| .+..+|.. +..+..|+.|++++| .+.. .....+..++.|++|.+++...
T Consensus 144 ~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~N-PL~h-----------fQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 144 SLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNN-PLNH-----------FQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred hHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCC-hhhH-----------HHHhcCccchhhhhhhcccccc
Confidence 3 346666666666666 55666665 666666666666666 3321 2344455555555555554321
Q ss_pred hh--hH-hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcE
Q 017525 157 HA--FQ-RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKN 233 (370)
Q Consensus 157 ~~--~~-~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 233 (370)
.- ++ ++..+. +|..++++..+--.. ...+.++++|+.|++|+|.++.+.... ..+.+|++
T Consensus 210 Tl~N~Ptsld~l~-----NL~dvDlS~N~Lp~v--Pecly~l~~LrrLNLS~N~iteL~~~~----------~~W~~lEt 272 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLH-----NLRDVDLSENNLPIV--PECLYKLRNLRRLNLSGNKITELNMTE----------GEWENLET 272 (1255)
T ss_pred hhhcCCCchhhhh-----hhhhccccccCCCcc--hHHHhhhhhhheeccCcCceeeeeccH----------HHHhhhhh
Confidence 11 11 111111 233334332221111 124556677778888877777664322 45677777
Q ss_pred EEEecccccccC-cccCCCCccEEeeccCcchHHhhhc--cccCC---------CcccccCCcccccccccccccccccc
Q 017525 234 VYISRSKFRHAT-WLFLAPNLKRVEIDNCQDMKEIIDS--EKFGE---------VPAEVMANLIPFARLERLILEELKNL 301 (370)
Q Consensus 234 L~l~~~~l~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~--~~~~~---------~~~~~~~~~~~~p~L~~L~l~~~~~l 301 (370)
|++++|+++.+| ++.++++|+.|.+.+|+..=+-+++ .+.+. ...-+|..++.|++|+.|.++.+ .+
T Consensus 273 LNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~N-rL 351 (1255)
T KOG0444|consen 273 LNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHN-RL 351 (1255)
T ss_pred hccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccc-ce
Confidence 777777777765 4666777777777666532111110 00000 00114567788889999988765 45
Q ss_pred ccccCCCccCCCcceEeecCCCCCCC
Q 017525 302 KTVHSKALPFPHLKEMSVDRCPLLKK 327 (370)
Q Consensus 302 ~~i~~~~~~~~~L~~L~l~~c~~L~~ 327 (370)
-.++....-++.|+.|++...|+|.-
T Consensus 352 iTLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 352 ITLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred eechhhhhhcCCcceeeccCCcCccC
Confidence 55555555688999999999998874
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=7.7e-23 Score=187.11 Aligned_cols=285 Identities=22% Similarity=0.250 Sum_probs=169.2
Q ss_pred ccccCC-CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC----cchhhhhccccCCEEeccCCcccccCcccc
Q 017525 6 ENLVES-PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN----PLLFEISKVVSLQHLDLSHSRIESLPIEFK 80 (370)
Q Consensus 6 ~~l~~~-~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~ 80 (370)
+++|.. +.+.+|+.|.+.+|++..+-.. +..++.||.+++..|+ .+|..+..+..|..|++++|.++++|..+.
T Consensus 45 ~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE 123 (1255)
T KOG0444|consen 45 EQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLE 123 (1255)
T ss_pred hhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhh
Confidence 344443 4444555555555544433333 3445555555555554 455555555555556666665555555555
Q ss_pred cCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH
Q 017525 81 CLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ 160 (370)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~ 160 (370)
..+++..|++++| .+..+|...+.+++.|-.||+++| .+. ..+..+..+.+|++|.+++|....++
T Consensus 124 ~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~N-rLe------------~LPPQ~RRL~~LqtL~Ls~NPL~hfQ 189 (1255)
T KOG0444|consen 124 YAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNN-RLE------------MLPPQIRRLSMLQTLKLSNNPLNHFQ 189 (1255)
T ss_pred hhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccc-hhh------------hcCHHHHHHhhhhhhhcCCChhhHHH
Confidence 5555556666555 455555554555555556666655 444 34455667788889999998876654
Q ss_pred --hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEec
Q 017525 161 --RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISR 238 (370)
Q Consensus 161 --~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 238 (370)
.+..+.. |..|.+++-......-..++..+.+|+.+++|.|.+..++... -.+++|+.|+|++
T Consensus 190 LrQLPsmts-----L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecl----------y~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 190 LRQLPSMTS-----LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECL----------YKLRNLRRLNLSG 254 (1255)
T ss_pred HhcCccchh-----hhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHH----------hhhhhhheeccCc
Confidence 2333332 3333333322222222236677889999999999999988766 3589999999999
Q ss_pred ccccccC-cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccc------------------
Q 017525 239 SKFRHAT-WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK------------------ 299 (370)
Q Consensus 239 ~~l~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~------------------ 299 (370)
|+++.+. ..+...+|++|+++.|+... +|..+..+++|+.|.+.++.
T Consensus 255 N~iteL~~~~~~W~~lEtLNlSrNQLt~--------------LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev 320 (1255)
T KOG0444|consen 255 NKITELNMTEGEWENLETLNLSRNQLTV--------------LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV 320 (1255)
T ss_pred CceeeeeccHHHHhhhhhhccccchhcc--------------chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH
Confidence 9999875 35567799999999987533 33456666666666655432
Q ss_pred ------ccccccCCCccCCCcceEeecCCCCCCCCCCCCCCC
Q 017525 300 ------NLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRG 335 (370)
Q Consensus 300 ------~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~ 335 (370)
.++-++.+...++.|+.|.++ |..|-.+|.....+
T Consensus 321 f~aanN~LElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL 361 (1255)
T KOG0444|consen 321 FHAANNKLELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLL 361 (1255)
T ss_pred HHhhccccccCchhhhhhHHHHHhccc-ccceeechhhhhhc
Confidence 223333334456666666664 34455566554444
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=1e-18 Score=181.75 Aligned_cols=286 Identities=20% Similarity=0.256 Sum_probs=167.9
Q ss_pred CCCCCCCEEecCCCcCC-------CCChHHHhcC-CCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccccc
Q 017525 12 PVCPRLRTLFLSSNIFH-------RVNSDFFQSM-ASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKC 81 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~-------~~~~~~~~~l-~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~ 81 (370)
..+++|+.|.+..+.+. .+|.. +..+ .+|+.|.+.+++ .+|..+ ...+|++|+++++.+..+|..+..
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccccc
Confidence 45677777766544211 23444 3333 347777776666 556555 456677777777766666666666
Q ss_pred CCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecc-hhhhH
Q 017525 82 LVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNN-FHAFQ 160 (370)
Q Consensus 82 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~-~~~~~ 160 (370)
+++|+.|+++++..+..+|. ++.+++|+.|++.+|..+. ..+..+..+++|+.|++..+. ...++
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~------------~lp~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLV------------ELPSSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcc------------ccchhhhccCCCCEEeCCCCCCcCccC
Confidence 77777777766655555554 5666677777776664443 233345556666666666542 22222
Q ss_pred hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCcc-----------------cc-
Q 017525 161 RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVK-----------------RV- 222 (370)
Q Consensus 161 ~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~-----------------~~- 222 (370)
... ++. +|+.|.+.+|..+.... . ..++|+.|++++|.++.++....-+.. ..
T Consensus 699 ~~i---~l~--sL~~L~Lsgc~~L~~~p--~--~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 699 TGI---NLK--SLYRLNLSGCSRLKSFP--D--ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred CcC---CCC--CCCEEeCCCCCCccccc--c--ccCCcCeeecCCCccccccccccccccccccccccchhhcccccccc
Confidence 211 111 25556666554432221 1 123556666666555444321100000 00
Q ss_pred --ccccccccCcEEEEecc-cccccC-cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccc
Q 017525 223 --LEISGFHSLKNVYISRS-KFRHAT-WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEEL 298 (370)
Q Consensus 223 --~~~~~~~~L~~L~l~~~-~l~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 298 (370)
.....+++|+.|++++| .+..+| .++.+++|+.|+|++|..++.++. . ..+++|+.|++++|
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~-------------~-~~L~sL~~L~Ls~c 835 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT-------------G-INLESLESLDLSGC 835 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC-------------C-CCccccCEEECCCC
Confidence 00133578999999999 666654 578899999999999987775532 1 14556666666665
Q ss_pred cccc--------------------cccCCCccCCCcceEeecCCCCCCCCCCCCCCCC
Q 017525 299 KNLK--------------------TVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGL 336 (370)
Q Consensus 299 ~~l~--------------------~i~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~ 336 (370)
..++ .++.....+++|+.|++.+|++++.+|.....+.
T Consensus 836 ~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~ 893 (1153)
T PLN03210 836 SRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK 893 (1153)
T ss_pred CccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence 4443 3444445688999999999999999998766553
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=4.2e-21 Score=167.21 Aligned_cols=291 Identities=21% Similarity=0.251 Sum_probs=181.5
Q ss_pred CcccccccCC-CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhh-ccccCCEEeccCCcccccCc
Q 017525 2 TNHIENLVES-PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEIS-KVVSLQHLDLSHSRIESLPI 77 (370)
Q Consensus 2 ~n~l~~l~~~-~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~-~l~~L~~L~l~~~~l~~lp~ 77 (370)
.|-++.+|.. +.+.+|..|++.+|.+..+|+ |.+|..|.++.+..|. .+|+..+ ++.++.+||++.|+++++|.
T Consensus 192 ~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd 269 (565)
T KOG0472|consen 192 SNLLETLPPELGGLESLELLYLRRNKIRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD 269 (565)
T ss_pred hhhhhcCChhhcchhhhHHHHhhhcccccCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch
Confidence 4556677776 777777777777777777774 6777777777777777 6666665 67788888888888888888
Q ss_pred ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccc------------------------cC--
Q 017525 78 EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSIL------------------------FG-- 131 (370)
Q Consensus 78 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------------------------~~-- 131 (370)
.+..+.+|+.||+++| .++.+|.. ++++ .|+.|-+.|| .+..+..++. ++
T Consensus 270 e~clLrsL~rLDlSNN-~is~Lp~s-Lgnl-hL~~L~leGN-PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNN-DISSLPYS-LGNL-HLKFLALEGN-PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred HHHHhhhhhhhcccCC-ccccCCcc-cccc-eeeehhhcCC-chHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 8778888888888887 66777776 7777 6777777777 4433222100 00
Q ss_pred ----CcchhhhhcccCCCccEEEEEecchhhhHh-hhcCCC---CCccc-------------------cCcEEecCcCCC
Q 017525 132 ----DCRVLVEELLGLEHLSVFTITLNNFHAFQR-LLGSCM---PQYVS-------------------TPSLCLSHFNNS 184 (370)
Q Consensus 132 ----~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~---~~~l~-------------------L~~l~l~~~~~~ 184 (370)
............-+.++|+++....+.++. .+...+ +...+ +..+.++ .+.
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls--nn~ 423 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS--NNK 423 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh--cCc
Confidence 000001111112233344443332222211 000000 00000 0111111 111
Q ss_pred CccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCcch
Q 017525 185 KSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDM 264 (370)
Q Consensus 185 ~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~ 264 (370)
.......++.+++|..|++++|.+.++|.++ ..+-.|+.|++++|++..+|.....+...++.+..+..+
T Consensus 424 isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~----------~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi 493 (565)
T KOG0472|consen 424 ISFVPLELSQLQKLTFLDLSNNLLNDLPEEM----------GSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQI 493 (565)
T ss_pred cccchHHHHhhhcceeeecccchhhhcchhh----------hhhhhhheecccccccccchHHHhhHHHHHHHHhccccc
Confidence 1111235667888999999999999888777 456779999999998888776555444333344444445
Q ss_pred HHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeecCCC
Q 017525 265 KEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCP 323 (370)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~ 323 (370)
..+. +.-+.++.+|.+|++.++ .+..++...+.+.+|++|+++|.|
T Consensus 494 ~~vd------------~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 494 GSVD------------PSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred cccC------------hHHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence 5543 234778999999999887 688999999999999999999886
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=1.9e-19 Score=156.97 Aligned_cols=249 Identities=21% Similarity=0.240 Sum_probs=125.1
Q ss_pred cccccccCC-CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525 3 NHIENLVES-PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF 79 (370)
Q Consensus 3 n~l~~l~~~-~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~ 79 (370)
|.++.+... .++..+++|++++|++..+|+. ++.+..+..++++.++ ++|..++.+.+|+.++.+++.+.++|..+
T Consensus 55 N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~a-ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i 133 (565)
T KOG0472|consen 55 NDLEVLREDLKNLACLTVLNVHDNKLSQLPAA-IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSI 133 (565)
T ss_pred CchhhccHhhhcccceeEEEeccchhhhCCHH-HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchH
Confidence 334444333 4555555566655555555555 4555555555555555 55555555555555555555555555555
Q ss_pred ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525 80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF 159 (370)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~ 159 (370)
+.+..|+.++..+| .+..+|.+ +.++.+|..+++.+| .+.. .+...-.++.|+.++...|..+.+
T Consensus 134 ~~~~~l~dl~~~~N-~i~slp~~-~~~~~~l~~l~~~~n-~l~~------------l~~~~i~m~~L~~ld~~~N~L~tl 198 (565)
T KOG0472|consen 134 GRLLDLEDLDATNN-QISSLPED-MVNLSKLSKLDLEGN-KLKA------------LPENHIAMKRLKHLDCNSNLLETL 198 (565)
T ss_pred HHHhhhhhhhcccc-ccccCchH-HHHHHHHHHhhcccc-chhh------------CCHHHHHHHHHHhcccchhhhhcC
Confidence 55555555555555 44445554 555555555555555 4432 122222245555555555444443
Q ss_pred Hh-hhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEec
Q 017525 160 QR-LLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISR 238 (370)
Q Consensus 160 ~~-~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 238 (370)
+. ++.+.. +..+.+...+- ..++.|..+..|+.|.++.|.++.++.+.. ..++++..|++..
T Consensus 199 P~~lg~l~~-----L~~LyL~~Nki---~~lPef~gcs~L~Elh~g~N~i~~lpae~~---------~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 199 PPELGGLES-----LELLYLRRNKI---RFLPEFPGCSLLKELHVGENQIEMLPAEHL---------KHLNSLLVLDLRD 261 (565)
T ss_pred Chhhcchhh-----hHHHHhhhccc---ccCCCCCccHHHHHHHhcccHHHhhHHHHh---------cccccceeeeccc
Confidence 32 111111 11111111111 112245555555555555555555543332 3456666666666
Q ss_pred ccccccC-cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccc
Q 017525 239 SKFRHAT-WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK 299 (370)
Q Consensus 239 ~~l~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 299 (370)
|+++..| .+..+.+|+.||+++|.... ++..++++ .|+.|.+.+++
T Consensus 262 Nklke~Pde~clLrsL~rLDlSNN~is~--------------Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 262 NKLKEVPDEICLLRSLERLDLSNNDISS--------------LPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccccCchHHHHhhhhhhhcccCCcccc--------------CCcccccc-eeeehhhcCCc
Confidence 6666554 34445566666666654322 33455666 66666666654
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=1.7e-15 Score=148.12 Aligned_cols=244 Identities=17% Similarity=0.143 Sum_probs=143.4
Q ss_pred cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccc
Q 017525 3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFK 80 (370)
Q Consensus 3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~ 80 (370)
+.++.+|... .++|+.|++.+|.++.+|. ..++|++|++++|. .+|.. .++|+.|++++|.++.+|..
T Consensus 211 ~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l-- 280 (788)
T PRK15387 211 SGLTTLPDCL-PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPAL-- 280 (788)
T ss_pred CCCCcCCcch-hcCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhc--
Confidence 4556666541 2467777777777776664 24677777777776 44432 35677777777776666542
Q ss_pred cCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH
Q 017525 81 CLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ 160 (370)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~ 160 (370)
..+|+.|++++| .+..+|.. .++|+.|++++| .+..+| .. ..+|+.|.+..|.+..++
T Consensus 281 -p~~L~~L~Ls~N-~Lt~LP~~----p~~L~~LdLS~N-~L~~Lp---------~l------p~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 281 -PSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDN-QLASLP---------AL------PSELCKLWAYNNQLTSLP 338 (788)
T ss_pred -hhhcCEEECcCC-cccccccc----ccccceeECCCC-ccccCC---------CC------cccccccccccCcccccc
Confidence 245667777776 45555542 356777777777 555333 11 123455555665554443
Q ss_pred hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccc
Q 017525 161 RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSK 240 (370)
Q Consensus 161 ~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 240 (370)
.+. . .|+.|++++..-. .. +.+ .++|+.|++++|.+..++ ....+|+.|++++|+
T Consensus 339 ~lp------~-~Lq~LdLS~N~Ls-~L--P~l--p~~L~~L~Ls~N~L~~LP-------------~l~~~L~~LdLs~N~ 393 (788)
T PRK15387 339 TLP------S-GLQELSVSDNQLA-SL--PTL--PSELYKLWAYNNRLTSLP-------------ALPSGLKELIVSGNR 393 (788)
T ss_pred ccc------c-ccceEecCCCccC-CC--CCC--CcccceehhhccccccCc-------------ccccccceEEecCCc
Confidence 211 1 3555555543221 11 111 235666666666666543 223567888888887
Q ss_pred ccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeec
Q 017525 241 FRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVD 320 (370)
Q Consensus 241 l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~ 320 (370)
++.++.. .++|+.|++++|.. ..++ . ...+|+.|+++++ .++.++.....++.|+.|+++
T Consensus 394 Lt~LP~l--~s~L~~LdLS~N~L-ssIP-------------~---l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 394 LTSLPVL--PSELKELMVSGNRL-TSLP-------------M---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccCCCCc--ccCCCEEEccCCcC-CCCC-------------c---chhhhhhhhhccC-cccccChHHhhccCCCeEECC
Confidence 7766543 35788888888763 2221 1 1346777888776 577777666677888888887
Q ss_pred CCC
Q 017525 321 RCP 323 (370)
Q Consensus 321 ~c~ 323 (370)
+++
T Consensus 454 ~N~ 456 (788)
T PRK15387 454 GNP 456 (788)
T ss_pred CCC
Confidence 764
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.62 E-value=1.1e-17 Score=159.62 Aligned_cols=106 Identities=27% Similarity=0.417 Sum_probs=82.9
Q ss_pred CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccC
Q 017525 15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEY 92 (370)
Q Consensus 15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 92 (370)
++++.|...+|.+..+... ..-.+|++++++.+. .+|.+++.+.+|+.+++.+|+++.+|..+...++|+.|.+.+
T Consensus 219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred cchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhh
Confidence 4445555555544432221 233578999999998 888889999999999999999999999888999999999999
Q ss_pred cccccccCcccccCCCCCcEEEccccCCCcccc
Q 017525 93 TYGISRIPPKVISNLKILETLRMYECAALPQAR 125 (370)
Q Consensus 93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 125 (370)
| .+..+|.. ..++++|++|++..| .+...|
T Consensus 297 n-el~yip~~-le~~~sL~tLdL~~N-~L~~lp 326 (1081)
T KOG0618|consen 297 N-ELEYIPPF-LEGLKSLRTLDLQSN-NLPSLP 326 (1081)
T ss_pred h-hhhhCCCc-ccccceeeeeeehhc-cccccc
Confidence 8 77888875 778999999999999 776554
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.61 E-value=7.3e-17 Score=154.21 Aligned_cols=271 Identities=21% Similarity=0.222 Sum_probs=184.6
Q ss_pred cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccc
Q 017525 3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFK 80 (370)
Q Consensus 3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~ 80 (370)
|.++.+...+...+|+.++++++.+..+| +++..|.+|+.+....|. .+|..+....+|++|.+..|.++.+|....
T Consensus 229 n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le 307 (1081)
T KOG0618|consen 229 NPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLE 307 (1081)
T ss_pred Ccceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCccc
Confidence 44554444466788999999999999999 558999999999999999 889999999999999999999999998888
Q ss_pred cCCcccEEeccCcccccccCcccccCCCC-CcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh--
Q 017525 81 CLVNLKCLNLEYTYGISRIPPKVISNLKI-LETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH-- 157 (370)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~-- 157 (370)
.+..|++|++..| .+..+|...+..+.. |+.|+.+.+ .+...+. ..-..++.|+.|.+..|...
T Consensus 308 ~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~-----------~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 308 GLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSN-KLSTLPS-----------YEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred ccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhc-ccccccc-----------ccchhhHHHHHHHHhcCccccc
Confidence 8999999999988 677777654544443 666666655 4443220 00111233334444444321
Q ss_pred hhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEe
Q 017525 158 AFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYIS 237 (370)
Q Consensus 158 ~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 237 (370)
.++.+..... |+.|+++.. .+.....+.+.+++.|+.|++|+|.++.++... ..++.|++|...
T Consensus 375 c~p~l~~~~h-----LKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tv----------a~~~~L~tL~ah 438 (1081)
T KOG0618|consen 375 CFPVLVNFKH-----LKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNKLTTLPDTV----------ANLGRLHTLRAH 438 (1081)
T ss_pred chhhhccccc-----eeeeeeccc-ccccCCHHHHhchHHhHHHhcccchhhhhhHHH----------HhhhhhHHHhhc
Confidence 2222222222 222222221 111122235677889999999999999998665 678999999999
Q ss_pred cccccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceE
Q 017525 238 RSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEM 317 (370)
Q Consensus 238 ~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L 317 (370)
+|.+..+|.+..++.|+.+|++.|....... +..+.. |+|++|+++++.. ..++...++.++.+
T Consensus 439 sN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l------------~~~~p~-p~LkyLdlSGN~~---l~~d~~~l~~l~~l 502 (1081)
T KOG0618|consen 439 SNQLLSFPELAQLPQLKVLDLSCNNLSEVTL------------PEALPS-PNLKYLDLSGNTR---LVFDHKTLKVLKSL 502 (1081)
T ss_pred CCceeechhhhhcCcceEEecccchhhhhhh------------hhhCCC-cccceeeccCCcc---cccchhhhHHhhhh
Confidence 9988888889999999999999876433332 222322 8999999999865 22233334444444
Q ss_pred ee
Q 017525 318 SV 319 (370)
Q Consensus 318 ~l 319 (370)
..
T Consensus 503 ~~ 504 (1081)
T KOG0618|consen 503 SQ 504 (1081)
T ss_pred hh
Confidence 33
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=1.3e-17 Score=145.26 Aligned_cols=258 Identities=21% Similarity=0.226 Sum_probs=166.5
Q ss_pred ccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccC-CcccccCc-c
Q 017525 4 HIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSH-SRIESLPI-E 78 (370)
Q Consensus 4 ~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~-~~l~~lp~-~ 78 (370)
.++++|+. -.+.-+.++|..|+|+.+|+..|+.+++||+|+|+.|. ..|++|.++..|..|.+.+ |+|+.+|+ .
T Consensus 57 GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 57 GLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred CcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 45666663 23556778999999999999999999999999999998 7788999999988887766 78998988 4
Q ss_pred cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhh
Q 017525 79 FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHA 158 (370)
Q Consensus 79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~ 158 (370)
++.+..|+.|.+.-| .+..+...++..+++|..|.+.+| .+..+. -..+..+..++.+.+..+.+..
T Consensus 136 F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn-~~q~i~-----------~~tf~~l~~i~tlhlA~np~ic 202 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDN-KIQSIC-----------KGTFQGLAAIKTLHLAQNPFIC 202 (498)
T ss_pred hhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccch-hhhhhc-----------cccccchhccchHhhhcCcccc
Confidence 778888888888777 555566666888888888888877 544222 1123334444444443333110
Q ss_pred hHh----------------hhcCCCCCcc---------------c---cCcEEecCcCCCCccccccccccCCCcEEEEe
Q 017525 159 FQR----------------LLGSCMPQYV---------------S---TPSLCLSHFNNSKSLGVFSLASLRHLQTLQLT 204 (370)
Q Consensus 159 ~~~----------------~~~~~~~~~l---------------~---L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 204 (370)
.-. .+....-..+ . +..--...|..........|.++++|++|+++
T Consensus 203 dCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 203 DCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred ccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence 000 0000000000 0 00000111111111112357889999999999
Q ss_pred cCCcccceeccCCCccccccccccccCcEEEEecccccccC--cccCCCCccEEeeccCcchHHhhhccccCCCcccccC
Q 017525 205 YNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT--WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMA 282 (370)
Q Consensus 205 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 282 (370)
+|.++.+...++ .....++.|.|..|++..+. .+..+..|+.|+|.+|+... +. +.
T Consensus 283 nN~i~~i~~~aF---------e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~-~~------------~~ 340 (498)
T KOG4237|consen 283 NNKITRIEDGAF---------EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITT-VA------------PG 340 (498)
T ss_pred CCccchhhhhhh---------cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEE-Ee------------cc
Confidence 999999877665 56788888888888777653 46778888889988877433 32 13
Q ss_pred Ccccccccccccccc
Q 017525 283 NLIPFARLERLILEE 297 (370)
Q Consensus 283 ~~~~~p~L~~L~l~~ 297 (370)
.+.....|.+|.+-.
T Consensus 341 aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLS 355 (498)
T ss_pred cccccceeeeeehcc
Confidence 555666666666653
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=2.6e-17 Score=127.83 Aligned_cols=164 Identities=22% Similarity=0.325 Sum_probs=125.7
Q ss_pred cccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccC
Q 017525 5 IENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCL 82 (370)
Q Consensus 5 l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l 82 (370)
+++++...++++++.|.+++|.++.+|+. ++.+++|++|++.++. ++|..++.+++|+.|+++-|++..+|..++.+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 34566667888899999999999999888 7899999999999988 88999999999999999999888889999999
Q ss_pred CcccEEeccCccccc-ccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHh
Q 017525 83 VNLKCLNLEYTYGIS-RIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQR 161 (370)
Q Consensus 83 ~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~ 161 (370)
|.|+.||+.+|.... .+|.. |..|..|+-|.+++| .++ ..+.+++++++|+.+.+..+....++.
T Consensus 102 p~levldltynnl~e~~lpgn-ff~m~tlralyl~dn-dfe------------~lp~dvg~lt~lqil~lrdndll~lpk 167 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDN-DFE------------ILPPDVGKLTNLQILSLRDNDLLSLPK 167 (264)
T ss_pred chhhhhhccccccccccCCcc-hhHHHHHHHHHhcCC-Ccc------------cCChhhhhhcceeEEeeccCchhhCcH
Confidence 999999998884443 45555 777888888888888 665 455667777777777666554332211
Q ss_pred hhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccce
Q 017525 162 LLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIK 212 (370)
Q Consensus 162 ~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 212 (370)
.++.+..|+.|.+.+|.++.++
T Consensus 168 -----------------------------eig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 168 -----------------------------EIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred -----------------------------HHHHHHHHHHHhcccceeeecC
Confidence 3455666777777777777554
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.58 E-value=4.7e-17 Score=141.85 Aligned_cols=264 Identities=16% Similarity=0.173 Sum_probs=162.3
Q ss_pred ecCCCcCCCCChHHHhcCC-CCcEEEccCCC--cc-hhhhhccccCCEEeccCCcccccC-cccccCCcccEEeccCccc
Q 017525 21 FLSSNIFHRVNSDFFQSMA-SLRVLKWSYSN--PL-LFEISKVVSLQHLDLSHSRIESLP-IEFKCLVNLKCLNLEYTYG 95 (370)
Q Consensus 21 ~l~~~~i~~~~~~~~~~l~-~L~~L~l~~~~--~~-~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~ 95 (370)
+.++-.++.+|.+ +| .-..|.|..|. .+ +..|+.+++||.|+|++|.|+.|. ..+..+.+|-.|-+.++..
T Consensus 52 dCr~~GL~eVP~~----LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 52 DCRGKGLTEVPAN----LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EccCCCcccCccc----CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 3344456667653 33 45567888888 44 467889999999999999998774 4788899998888887559
Q ss_pred ccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHh--hhcCCCCCcccc
Q 017525 96 ISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQR--LLGSCMPQYVST 173 (370)
Q Consensus 96 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~L 173 (370)
++++|.++|+++.+|+.|.+.-| ++.. .....+..++++..|.+..+.+..+.. +..... +
T Consensus 128 I~~l~k~~F~gL~slqrLllNan-~i~C-----------ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~-----i 190 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNAN-HINC-----------IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAA-----I 190 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChh-hhcc-----------hhHHHHHHhhhcchhcccchhhhhhccccccchhc-----c
Confidence 99999999999999999998877 5553 235567777888777777766544332 111111 2
Q ss_pred CcEEecCcCCCCccc-----------cccccccCCCcEEEEecCCcccceeccCCCcccc--------------cc---c
Q 017525 174 PSLCLSHFNNSKSLG-----------VFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRV--------------LE---I 225 (370)
Q Consensus 174 ~~l~l~~~~~~~~~~-----------~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~--------------~~---~ 225 (370)
+.+.+.......+-. ...++..+...-..+++..+..+...-+.+.... -| .
T Consensus 191 ~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf 270 (498)
T KOG4237|consen 191 KTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCF 270 (498)
T ss_pred chHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHH
Confidence 222222111100000 0122222222222222211111111000000000 01 1
Q ss_pred cccccCcEEEEeccccccc--CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccccccc
Q 017525 226 SGFHSLKNVYISRSKFRHA--TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKT 303 (370)
Q Consensus 226 ~~~~~L~~L~l~~~~l~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~ 303 (370)
..+++|++|++++|+++.+ .++.+...+++|.|..|+ ++.+-. ..+.++..|+.|++.++ .++.
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~------------~~f~~ls~L~tL~L~~N-~it~ 336 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSS------------GMFQGLSGLKTLSLYDN-QITT 336 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHH------------HhhhccccceeeeecCC-eeEE
Confidence 5688999999999999887 478889999999999887 444422 37788889999999887 6776
Q ss_pred ccCCCc-cCCCcceEee
Q 017525 304 VHSKAL-PFPHLKEMSV 319 (370)
Q Consensus 304 i~~~~~-~~~~L~~L~l 319 (370)
+.+..+ ....|.+|.+
T Consensus 337 ~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 337 VAPGAFQTLFSLSTLNL 353 (498)
T ss_pred Eecccccccceeeeeeh
Confidence 654432 2334555555
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=9e-15 Score=143.06 Aligned_cols=224 Identities=20% Similarity=0.162 Sum_probs=161.9
Q ss_pred CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525 2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF 79 (370)
Q Consensus 2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~ 79 (370)
+|.++.+|.. +++|+.|++++|.++.+|.. .++|+.|++++|. .+|.. ..+|+.|++++|+++.+|.
T Consensus 231 ~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~-- 299 (788)
T PRK15387 231 DNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPV-- 299 (788)
T ss_pred CCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCCchhhhhhc---hhhcCEEECcCCccccccc--
Confidence 5788888864 68999999999999988753 4789999999998 55543 2578899999999998886
Q ss_pred ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525 80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF 159 (370)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~ 159 (370)
..++|+.|++++| .+..+|.. ..+|+.|++.+| .++.+| .. ..+|+.|++++|.+..+
T Consensus 300 -~p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N-~L~~LP---------~l------p~~Lq~LdLS~N~Ls~L 357 (788)
T PRK15387 300 -LPPGLQELSVSDN-QLASLPAL----PSELCKLWAYNN-QLTSLP---------TL------PSGLQELSVSDNQLASL 357 (788)
T ss_pred -cccccceeECCCC-ccccCCCC----cccccccccccC-cccccc---------cc------ccccceEecCCCccCCC
Confidence 3578999999998 56666642 235778888888 776443 11 15788999999887766
Q ss_pred HhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc
Q 017525 160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS 239 (370)
Q Consensus 160 ~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 239 (370)
+... . ++..|.+.+.. +... +. ..++|+.|++++|.++.++ ...++|+.|++++|
T Consensus 358 P~lp--~-----~L~~L~Ls~N~-L~~L--P~--l~~~L~~LdLs~N~Lt~LP-------------~l~s~L~~LdLS~N 412 (788)
T PRK15387 358 PTLP--S-----ELYKLWAYNNR-LTSL--PA--LPSGLKELIVSGNRLTSLP-------------VLPSELKELMVSGN 412 (788)
T ss_pred CCCC--c-----ccceehhhccc-cccC--cc--cccccceEEecCCcccCCC-------------CcccCCCEEEccCC
Confidence 5432 1 34455444322 1111 11 1257999999999988764 23468999999999
Q ss_pred cccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccc
Q 017525 240 KFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK 299 (370)
Q Consensus 240 ~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 299 (370)
+++.++.. ..+|+.|++++|.. +.+ |..+..+++|+.|++++++
T Consensus 413 ~LssIP~l--~~~L~~L~Ls~NqL-t~L-------------P~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 413 RLTSLPML--PSGLLSLSVYRNQL-TRL-------------PESLIHLSSETTVNLEGNP 456 (788)
T ss_pred cCCCCCcc--hhhhhhhhhccCcc-ccc-------------ChHHhhccCCCeEECCCCC
Confidence 88887643 45788899998874 333 3467788999999999874
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=1.6e-14 Score=141.97 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=28.8
Q ss_pred CCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCc
Q 017525 196 RHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQ 262 (370)
Q Consensus 196 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~ 262 (370)
++|+.|++++|.++.++. ..+++|+.|++++|+++.++. .-.++|+.|+|++|.
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~------------~l~~sL~~L~Ls~N~L~~LP~-~lp~~L~~LdLs~N~ 378 (754)
T PRK15370 325 PGLKTLEAGENALTSLPA------------SLPPELQVLDVSKNQITVLPE-TLPPTITTLDVSRNA 378 (754)
T ss_pred ccceeccccCCccccCCh------------hhcCcccEEECCCCCCCcCCh-hhcCCcCEEECCCCc
Confidence 456666666666555432 123466666666665554432 113456666666654
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=8.8e-14 Score=136.81 Aligned_cols=237 Identities=16% Similarity=0.197 Sum_probs=158.4
Q ss_pred cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccc
Q 017525 3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFK 80 (370)
Q Consensus 3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~ 80 (370)
+.++.+|.. -.+.|+.|++++|.++.+|...+ ++|++|++++|. .+|..+. .+|+.|++++|.++.+|..+.
T Consensus 188 ~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~ 261 (754)
T PRK15370 188 LGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP 261 (754)
T ss_pred CCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh
Confidence 456667764 23679999999999999988633 589999999998 6776553 479999999999999987654
Q ss_pred cCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH
Q 017525 81 CLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ 160 (370)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~ 160 (370)
.+|+.|++++| .+..+|.. +. ++|+.|++++| .+..+| ..+ .++|+.|++..|....++
T Consensus 262 --s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N-~Lt~LP------------~~l--p~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 262 --SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDN-SIRTLP------------AHL--PSGITHLNVQSNSLTALP 320 (754)
T ss_pred --CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCC-ccccCc------------ccc--hhhHHHHHhcCCccccCC
Confidence 58999999988 66677765 33 58999999999 776444 111 135667777777665543
Q ss_pred hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccc
Q 017525 161 RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSK 240 (370)
Q Consensus 161 ~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 240 (370)
... .. +|+.|.+.++.-.... ..+ .++|+.|++++|.++.++. ...++|++|++++|+
T Consensus 321 ~~l-----~~-sL~~L~Ls~N~Lt~LP--~~l--~~sL~~L~Ls~N~L~~LP~------------~lp~~L~~LdLs~N~ 378 (754)
T PRK15370 321 ETL-----PP-GLKTLEAGENALTSLP--ASL--PPELQVLDVSKNQITVLPE------------TLPPTITTLDVSRNA 378 (754)
T ss_pred ccc-----cc-cceeccccCCccccCC--hhh--cCcccEEECCCCCCCcCCh------------hhcCCcCEEECCCCc
Confidence 211 11 4666666655422211 112 2588999999888876643 224688889998888
Q ss_pred ccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccc
Q 017525 241 FRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK 299 (370)
Q Consensus 241 l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 299 (370)
++.++.- -...|+.|++++|... .+.. .++.....+|.+..|.+.+++
T Consensus 379 Lt~LP~~-l~~sL~~LdLs~N~L~-~LP~---------sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 379 LTNLPEN-LPAALQIMQASRNNLV-RLPE---------SLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCCCCHh-HHHHHHHHhhccCCcc-cCch---------hHHHHhhcCCCccEEEeeCCC
Confidence 7776531 1236888888887642 2211 011233345777777777653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1e-15 Score=119.10 Aligned_cols=142 Identities=24% Similarity=0.334 Sum_probs=125.3
Q ss_pred CcccccccCC-CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCccc--ccC
Q 017525 2 TNHIENLVES-PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIE--SLP 76 (370)
Q Consensus 2 ~n~l~~l~~~-~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~--~lp 76 (370)
.|.++.+|+. .++.+|++|++++|+|+.+|.. ++.+++|+.|++..+. .+|.+|+.++-|++||+.+|++. .+|
T Consensus 42 HNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lp 120 (264)
T KOG0617|consen 42 HNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLP 120 (264)
T ss_pred cCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCC
Confidence 3667778877 8999999999999999999998 8999999999999998 89999999999999999999885 789
Q ss_pred cccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch
Q 017525 77 IEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF 156 (370)
Q Consensus 77 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 156 (370)
..+..++.|+.|++++| ....+|.. ++++++||+|.+..| .+- ..+.+++.++.|+.+.+.++..
T Consensus 121 gnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdn-dll------------~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 121 GNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDN-DLL------------SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred cchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccC-chh------------hCcHHHHHHHHHHHHhccccee
Confidence 88889999999999998 66778887 999999999999999 544 5677888889999999988876
Q ss_pred hhh
Q 017525 157 HAF 159 (370)
Q Consensus 157 ~~~ 159 (370)
..+
T Consensus 186 ~vl 188 (264)
T KOG0617|consen 186 TVL 188 (264)
T ss_pred eec
Confidence 544
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.40 E-value=5.4e-14 Score=127.36 Aligned_cols=253 Identities=18% Similarity=0.151 Sum_probs=118.4
Q ss_pred EecCCCcCC-CCChHHHhcCCCCcEEEccCCC-------cchhhhhccccCCEEeccCCcccc-------cCcccccCCc
Q 017525 20 LFLSSNIFH-RVNSDFFQSMASLRVLKWSYSN-------PLLFEISKVVSLQHLDLSHSRIES-------LPIEFKCLVN 84 (370)
Q Consensus 20 L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~l~~L~~L~l~~~~l~~-------lp~~~~~l~~ 84 (370)
|+|..+.++ .-....+..+.+|++|+++++. .++..+...+++++++++++.+.. ++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 445555444 2222335556666666666665 133334445556666666654432 1223445666
Q ss_pred ccEEeccCcccccccCcccccCCC---CCcEEEccccCCCcccccccccCCcchhhhhcccC-CCccEEEEEecchhh--
Q 017525 85 LKCLNLEYTYGISRIPPKVISNLK---ILETLRMYECAALPQARDSILFGDCRVLVEELLGL-EHLSVFTITLNNFHA-- 158 (370)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~~l~---~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~l~l~~~~~~~-- 158 (370)
|+.|++++|......+.. +..+. +|++|++++| .+.... .......+..+ ++|+.++++.+.+..
T Consensus 83 L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~ls~~-~~~~~~-------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 83 LQELDLSDNALGPDGCGV-LESLLRSSSLQELKLNNN-GLGDRG-------LRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred eeEEEccCCCCChhHHHH-HHHHhccCcccEEEeeCC-ccchHH-------HHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 666666665333222221 33333 3666666666 443100 00122233444 566666666655431
Q ss_pred hHhhhc-CCCCCccccCcEEecCcCCCCcccc----ccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcE
Q 017525 159 FQRLLG-SCMPQYVSTPSLCLSHFNNSKSLGV----FSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKN 233 (370)
Q Consensus 159 ~~~~~~-~~~~~~l~L~~l~l~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 233 (370)
...+.. ..... .++.+.+.++.- ..... ..+..+++|+.|++++|.+++.....++. ....+++|++
T Consensus 154 ~~~~~~~~~~~~--~L~~L~l~~n~l-~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-----~~~~~~~L~~ 225 (319)
T cd00116 154 CEALAKALRANR--DLKELNLANNGI-GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE-----TLASLKSLEV 225 (319)
T ss_pred HHHHHHHHHhCC--CcCEEECcCCCC-chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH-----HhcccCCCCE
Confidence 111110 00001 244444444321 11111 12334467777777777665443221110 0034677788
Q ss_pred EEEeccccccc--Cccc-----CCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccc
Q 017525 234 VYISRSKFRHA--TWLF-----LAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEEL 298 (370)
Q Consensus 234 L~l~~~~l~~~--~~l~-----~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 298 (370)
|++++|.+++. ..+. ..+.|++|++++|........ .+...+..+++|+.++++++
T Consensus 226 L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~---------~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK---------DLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred EecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH---------HHHHHHhcCCCccEEECCCC
Confidence 88877766542 1111 236778888877764311110 01123445577777777776
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.34 E-value=7.4e-13 Score=119.91 Aligned_cols=261 Identities=23% Similarity=0.188 Sum_probs=165.8
Q ss_pred CCCCCCCEEecCCCcCCC-----CChHHHhcCCCCcEEEccCCC-c--------chhhhhccccCCEEeccCCccc-ccC
Q 017525 12 PVCPRLRTLFLSSNIFHR-----VNSDFFQSMASLRVLKWSYSN-P--------LLFEISKVVSLQHLDLSHSRIE-SLP 76 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~-----~~~~~~~~l~~L~~L~l~~~~-~--------~~~~~~~l~~L~~L~l~~~~l~-~lp 76 (370)
..++.|++|+++++.++. ++.. +...+.+++++++++. . ++..+..+++|++|++++|.+. ..+
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 345669999999998752 3333 5677889999998876 2 3455677889999999999875 333
Q ss_pred cccccC---CcccEEeccCccccc----ccCcccccCC-CCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccE
Q 017525 77 IEFKCL---VNLKCLNLEYTYGIS----RIPPKVISNL-KILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSV 148 (370)
Q Consensus 77 ~~~~~l---~~L~~L~l~~~~~~~----~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 148 (370)
..+..+ ++|++|++++|+... .+.. .+..+ ++|+.|++.+| .+..-. .......+..+++|+.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n-~l~~~~-------~~~~~~~~~~~~~L~~ 169 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGRN-RLEGAS-------CEALAKALRANRDLKE 169 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCCC-cCCchH-------HHHHHHHHHhCCCcCE
Confidence 334344 459999999985432 1112 25566 89999999999 655100 1123445666788999
Q ss_pred EEEEecchhh--hHhhhc-CCCCCccccCcEEecCcCCCCcccc----ccccccCCCcEEEEecCCcccceeccCCCccc
Q 017525 149 FTITLNNFHA--FQRLLG-SCMPQYVSTPSLCLSHFNNSKSLGV----FSLASLRHLQTLQLTYNDLDEIKIDNGGEVKR 221 (370)
Q Consensus 149 l~l~~~~~~~--~~~~~~-~~~~~~l~L~~l~l~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 221 (370)
++++.+.... .+.+.. ..... +|+.+++.++.- ...+. ..+..+++|++|++++|.+++.....+...
T Consensus 170 L~l~~n~l~~~~~~~l~~~l~~~~--~L~~L~L~~n~i-~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~-- 244 (319)
T cd00116 170 LNLANNGIGDAGIRALAEGLKANC--NLEVLDLNNNGL-TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA-- 244 (319)
T ss_pred EECcCCCCchHHHHHHHHHHHhCC--CCCEEeccCCcc-ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHH--
Confidence 9999887652 222211 11111 478888887643 22211 245577899999999998876433222110
Q ss_pred cccccccccCcEEEEeccccccc------CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccc-ccccccc
Q 017525 222 VLEISGFHSLKNVYISRSKFRHA------TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPF-ARLERLI 294 (370)
Q Consensus 222 ~~~~~~~~~L~~L~l~~~~l~~~------~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~L~~L~ 294 (370)
++ ...+.|++|++++|.+++. ..+..+++|+.+++++|....+-... ....+..+ +.|+.++
T Consensus 245 -~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~---------~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 245 -LL-SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL---------LAESLLEPGNELESLW 313 (319)
T ss_pred -Hh-ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH---------HHHHHhhcCCchhhcc
Confidence 00 1247999999999987632 23456789999999999865442100 11233444 6777777
Q ss_pred cccc
Q 017525 295 LEEL 298 (370)
Q Consensus 295 l~~~ 298 (370)
+.+.
T Consensus 314 ~~~~ 317 (319)
T cd00116 314 VKDD 317 (319)
T ss_pred cCCC
Confidence 6553
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.28 E-value=3.6e-12 Score=127.49 Aligned_cols=256 Identities=22% Similarity=0.276 Sum_probs=158.4
Q ss_pred cccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC----cchh-hhhccccCCEEeccCC-cccccCcccc
Q 017525 7 NLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN----PLLF-EISKVVSLQHLDLSHS-RIESLPIEFK 80 (370)
Q Consensus 7 ~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~----~~~~-~~~~l~~L~~L~l~~~-~l~~lp~~~~ 80 (370)
+.|...+....|...+.++.+..++.. ..++.|++|-+..+. .++. .|..++.|++||+++| .+..+|..++
T Consensus 515 ~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~ 592 (889)
T KOG4658|consen 515 EIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG 592 (889)
T ss_pred ccccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh
Confidence 345556778889999999988777664 567789999999884 3333 3677999999999988 6789999999
Q ss_pred cCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh-hh
Q 017525 81 CLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH-AF 159 (370)
Q Consensus 81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~-~~ 159 (370)
.+-+|++|+++++ .+..+|.+ ++++++|.+|++..+.... ...+....+++|+.|.+...... +.
T Consensus 593 ~Li~LryL~L~~t-~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~------------~~~~i~~~L~~Lr~L~l~~s~~~~~~ 658 (889)
T KOG4658|consen 593 ELVHLRYLDLSDT-GISHLPSG-LGNLKKLIYLNLEVTGRLE------------SIPGILLELQSLRVLRLPRSALSNDK 658 (889)
T ss_pred hhhhhhcccccCC-CccccchH-HHHHHhhheeccccccccc------------cccchhhhcccccEEEeeccccccch
Confidence 9999999999998 78899998 9999999999999874333 33445556889999888766511 11
Q ss_pred HhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCc----EEEEecCCcccceeccCCCccccccccccccCcEEE
Q 017525 160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQ----TLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVY 235 (370)
Q Consensus 160 ~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~ 235 (370)
-.+.....+.. |..+....... .....+..++.|+ .+.+.++....... +...+.+|+.|.
T Consensus 659 ~~l~el~~Le~--L~~ls~~~~s~---~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~----------~~~~l~~L~~L~ 723 (889)
T KOG4658|consen 659 LLLKELENLEH--LENLSITISSV---LLLEDLLGMTRLRSLLQSLSIEGCSKRTLIS----------SLGSLGNLEELS 723 (889)
T ss_pred hhHHhhhcccc--hhhheeecchh---HhHhhhhhhHHHHHHhHhhhhcccccceeec----------ccccccCcceEE
Confidence 11111222211 33333322211 0001111122222 11111111111111 115567777777
Q ss_pred Eeccccccc--Ccc-----cC-CCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCC
Q 017525 236 ISRSKFRHA--TWL-----FL-APNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSK 307 (370)
Q Consensus 236 l~~~~l~~~--~~l-----~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~ 307 (370)
+.+|.+.++ .+. .. ++++..+.+.+|...++. ......|+|+.|.+..|..++++.+.
T Consensus 724 i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l--------------~~~~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 724 ILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL--------------TWLLFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred EEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc--------------chhhccCcccEEEEecccccccCCCH
Confidence 777755432 111 11 445555556666554433 24456688888888888777766443
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.25 E-value=1.4e-13 Score=121.32 Aligned_cols=263 Identities=20% Similarity=0.241 Sum_probs=140.5
Q ss_pred CCcEEEccCCC-----cchhhhhccccCCEEeccCC-ccc--ccCcccccCCcccEEeccCcccccccCcc-cccCCCCC
Q 017525 40 SLRVLKWSYSN-----PLLFEISKVVSLQHLDLSHS-RIE--SLPIEFKCLVNLKCLNLEYTYGISRIPPK-VISNLKIL 110 (370)
Q Consensus 40 ~L~~L~l~~~~-----~~~~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~l~~L 110 (370)
-|+.|.+.+|. .+-....+++++++|.+.+| +++ .+-..-..+++|+++++..|..+...... ...++++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 35555555554 12222345556666655555 232 11112234556666666555333332211 23355666
Q ss_pred cEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccc
Q 017525 111 ETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVF 190 (370)
Q Consensus 111 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~ 190 (370)
.+++++-|..+.. .....-....+.++.+...++.....+.+........ .+..+++.+|..+++.++-
T Consensus 219 ~~lNlSwc~qi~~----------~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~-~i~~lnl~~c~~lTD~~~~ 287 (483)
T KOG4341|consen 219 KYLNLSWCPQISG----------NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCL-EILKLNLQHCNQLTDEDLW 287 (483)
T ss_pred HHhhhccCchhhc----------CcchHHhccchhhhhhhhcccccccHHHHHHHhccCh-HhhccchhhhccccchHHH
Confidence 6666655533321 0111122233334444333443333333332222111 3555566677666666432
Q ss_pred ccc-ccCCCcEEEEec-CCcccceeccCCCccccccccccccCcEEEEecc-cccccC--cc-cCCCCccEEeeccCcch
Q 017525 191 SLA-SLRHLQTLQLTY-NDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS-KFRHAT--WL-FLAPNLKRVEIDNCQDM 264 (370)
Q Consensus 191 ~l~-~l~~L~~L~l~~-~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~--~l-~~l~~L~~L~L~~~~~~ 264 (370)
.+. .+..|+.|..++ +.+++...+..+ ...++|+.|.+++| ++++.. .+ ...+.|+.+++..|-.+
T Consensus 288 ~i~~~c~~lq~l~~s~~t~~~d~~l~aLg--------~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 288 LIACGCHALQVLCYSSCTDITDEVLWALG--------QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI 359 (483)
T ss_pred HHhhhhhHhhhhcccCCCCCchHHHHHHh--------cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee
Confidence 222 456777887777 456665555444 56688888888888 777653 23 35778888888887766
Q ss_pred HHhhhccccCCCcccccCCccccccccccccccccccccc-----cCCCccCCCcceEeecCCCCCCCCCCCC
Q 017525 265 KEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTV-----HSKALPFPHLKEMSVDRCPLLKKLPLDC 332 (370)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i-----~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 332 (370)
.+.. +.....++|.|+.|.+++|+.+++. .....+...|+.+++++||.+++--+.-
T Consensus 360 ~d~t-----------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~ 421 (483)
T KOG4341|consen 360 TDGT-----------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH 421 (483)
T ss_pred hhhh-----------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH
Confidence 6552 2235567888888888888766654 2223356678888888888777644433
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=2.8e-11 Score=97.87 Aligned_cols=138 Identities=26% Similarity=0.294 Sum_probs=51.1
Q ss_pred cccccccCCCCCCCCCEEecCCCcCCCCChHHHh-cCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCccc-
Q 017525 3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQ-SMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEF- 79 (370)
Q Consensus 3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~- 79 (370)
+.|++.+...+...++.|+|.+|.|+.+.. ++ .+.+|+.|++++|. .-...+..+++|+.|++++|.++.+...+
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp -----------------------------S----TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHH
T ss_pred cccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchH
Confidence 346666666778889999999999987754 44 57899999999999 44446788999999999999999886555
Q ss_pred ccCCcccEEeccCcccccccC-cccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEE
Q 017525 80 KCLVNLKCLNLEYTYGISRIP-PKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTIT 152 (370)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~ 152 (370)
..+++|++|++++| .+..+. ...++.+++|++|++.+| .++..+ .--...+..+++|+.||-.
T Consensus 85 ~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~N-Pv~~~~--------~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 85 KNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGN-PVCEKK--------NYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT--GGGGST--------THHHHHHHH-TT-SEETTE
T ss_pred HhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCC-cccchh--------hHHHHHHHHcChhheeCCE
Confidence 46899999999998 444433 233778999999999999 555221 1223445666777777543
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=4.2e-12 Score=109.68 Aligned_cols=241 Identities=19% Similarity=0.150 Sum_probs=164.3
Q ss_pred CCCCCCCEEecCCCcCCC----CChHHHhcCCCCcEEEccCCC------cchhh-------hhccccCCEEeccCCccc-
Q 017525 12 PVCPRLRTLFLSSNIFHR----VNSDFFQSMASLRVLKWSYSN------PLLFE-------ISKVVSLQHLDLSHSRIE- 73 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~----~~~~~~~~l~~L~~L~l~~~~------~~~~~-------~~~l~~L~~L~l~~~~l~- 73 (370)
-.+..++.+++++|.|.. .....+.+.++|+..++++-- ++|.. +-.+++|++++||.|-+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 467889999999998862 333447888999999999864 44433 445689999999999764
Q ss_pred -c---cCcccccCCcccEEeccCcccccccCccc-------------ccCCCCCcEEEccccCCCcccccccccCCcchh
Q 017525 74 -S---LPIEFKCLVNLKCLNLEYTYGISRIPPKV-------------ISNLKILETLRMYECAALPQARDSILFGDCRVL 136 (370)
Q Consensus 74 -~---lp~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 136 (370)
. +..-++++..|++|++.+| .++...... ++.-++|+++....| ++.+-+ ....
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~g-------a~~~ 177 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGG-------ATAL 177 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-cccccc-------HHHH
Confidence 2 2335778999999999998 555333221 344577899988888 776422 2234
Q ss_pred hhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccC
Q 017525 137 VEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNG 216 (370)
Q Consensus 137 ~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~ 216 (370)
...++.++.|+.+.+..|.+..-. . ..-...+..+++|++||+..|.++.-+....
T Consensus 178 A~~~~~~~~leevr~~qN~I~~eG-----------------------~-~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNGIRPEG-----------------------V-TALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred HHHHHhccccceEEEecccccCch-----------------------h-HHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 455667778888877776542111 0 0111357788999999999998876543222
Q ss_pred CCccccccccccccCcEEEEecccccccC------cc-cCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccc
Q 017525 217 GEVKRVLEISGFHSLKNVYISRSKFRHAT------WL-FLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFAR 289 (370)
Q Consensus 217 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~------~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 289 (370)
+. +...+++|+.|++..|.+++-. .+ ...|+|+.|.+.+|....+-... +.......|.
T Consensus 234 ak-----aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~---------la~~~~ek~d 299 (382)
T KOG1909|consen 234 AK-----ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA---------LAACMAEKPD 299 (382)
T ss_pred HH-----HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH---------HHHHHhcchh
Confidence 21 1156889999999999665532 12 35899999999999866554210 1124455899
Q ss_pred cccccccccc
Q 017525 290 LERLILEELK 299 (370)
Q Consensus 290 L~~L~l~~~~ 299 (370)
|+.|.|++|.
T Consensus 300 L~kLnLngN~ 309 (382)
T KOG1909|consen 300 LEKLNLNGNR 309 (382)
T ss_pred hHHhcCCccc
Confidence 9999999984
No 28
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.14 E-value=1.7e-12 Score=114.48 Aligned_cols=291 Identities=17% Similarity=0.157 Sum_probs=190.6
Q ss_pred CCCCEEecCCC-cCCCCC-hHHHhcCCCCcEEEccCCC-----cchhhhhccccCCEEeccCC-ccc--ccCcccccCCc
Q 017525 15 PRLRTLFLSSN-IFHRVN-SDFFQSMASLRVLKWSYSN-----PLLFEISKVVSLQHLDLSHS-RIE--SLPIEFKCLVN 84 (370)
Q Consensus 15 ~~L~~L~l~~~-~i~~~~-~~~~~~l~~L~~L~l~~~~-----~~~~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~ 84 (370)
-.|+.|.++++ .+..-+ ..+..+|++++.|.+.+|. .....-..+++|+++++..| .++ .+......+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 46788999998 444222 2346789999999999998 12222256899999999997 555 33334557999
Q ss_pred ccEEeccCcccccccC-cccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhh
Q 017525 85 LKCLNLEYTYGISRIP-PKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLL 163 (370)
Q Consensus 85 L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~ 163 (370)
|+++++++|..++.-. .....+++.++.+...+|...+. +.....-.....+..+++..+...+...+.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l----------e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~ 287 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL----------EALLKAAAYCLEILKLNLQHCNQLTDEDLW 287 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH----------HHHHHHhccChHhhccchhhhccccchHHH
Confidence 9999999997665421 12256788888887777733321 111111122233334444344332222222
Q ss_pred cCCCCCccccCcEEecCcCCCCcccccccc-ccCCCcEEEEecC-CcccceeccCCCccccccccccccCcEEEEecc-c
Q 017525 164 GSCMPQYVSTPSLCLSHFNNSKSLGVFSLA-SLRHLQTLQLTYN-DLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS-K 240 (370)
Q Consensus 164 ~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~ 240 (370)
....... .+..++...+....+..+.+++ +.++|+.|-++.+ .+++.....++ .+++.|+.+++..| .
T Consensus 288 ~i~~~c~-~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~--------rn~~~Le~l~~e~~~~ 358 (483)
T KOG4341|consen 288 LIACGCH-ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG--------RNCPHLERLDLEECGL 358 (483)
T ss_pred HHhhhhh-HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh--------cCChhhhhhcccccce
Confidence 2222222 4778888888887777655554 5689999999984 46766655555 67899999999999 4
Q ss_pred cccc---CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCC-CccCCCcce
Q 017525 241 FRHA---TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSK-ALPFPHLKE 316 (370)
Q Consensus 241 l~~~---~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~-~~~~~~L~~ 316 (370)
+++- ..-..++.|+.|.+++|..+++... .. ..........|..+.+.+|+.+++-... ...++.||.
T Consensus 359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi-~~-------l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGI-RH-------LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER 430 (483)
T ss_pred ehhhhHhhhccCCchhccCChhhhhhhhhhhh-hh-------hhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence 4443 2234689999999999998887621 00 1124567788999999999887765443 235889999
Q ss_pred EeecCCCCCCCCCCCC
Q 017525 317 MSVDRCPLLKKLPLDC 332 (370)
Q Consensus 317 L~l~~c~~L~~l~~~~ 332 (370)
+++.+|..+++-+...
T Consensus 431 i~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 431 IELIDCQDVTKEAISR 446 (483)
T ss_pred eeeechhhhhhhhhHH
Confidence 9999998888765543
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=1e-11 Score=113.74 Aligned_cols=200 Identities=20% Similarity=0.223 Sum_probs=149.8
Q ss_pred cccccCC---CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525 5 IENLVES---PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF 79 (370)
Q Consensus 5 l~~l~~~---~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~ 79 (370)
++++|.. ..+..-...+++.|.+..+|.. +..|..|+.+.+..|. .+|..++++..|.+++++.|.+..+|..+
T Consensus 62 lk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l 140 (722)
T KOG0532|consen 62 LKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL 140 (722)
T ss_pred hhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh
Confidence 4555654 3455566788999999999888 7888889998888877 88989999999999999999999999988
Q ss_pred ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525 80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF 159 (370)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~ 159 (370)
..|+ |+.|-+++| .++.+|.. ++.++.|..||++.| .+. ..+..+..+..|+.+.+..|....+
T Consensus 141 C~lp-Lkvli~sNN-kl~~lp~~-ig~~~tl~~ld~s~n-ei~------------slpsql~~l~slr~l~vrRn~l~~l 204 (722)
T KOG0532|consen 141 CDLP-LKVLIVSNN-KLTSLPEE-IGLLPTLAHLDVSKN-EIQ------------SLPSQLGYLTSLRDLNVRRNHLEDL 204 (722)
T ss_pred hcCc-ceeEEEecC-ccccCCcc-cccchhHHHhhhhhh-hhh------------hchHHhhhHHHHHHHHHhhhhhhhC
Confidence 8887 899999988 78888887 888899999999998 665 4556677777777776666655444
Q ss_pred HhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc
Q 017525 160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS 239 (370)
Q Consensus 160 ~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 239 (370)
+. .+..+ .|..||++.|.+..++.++ ..+..|++|.|.+|
T Consensus 205 p~-----------------------------El~~L-pLi~lDfScNkis~iPv~f----------r~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 205 PE-----------------------------ELCSL-PLIRLDFSCNKISYLPVDF----------RKMRHLQVLQLENN 244 (722)
T ss_pred CH-----------------------------HHhCC-ceeeeecccCceeecchhh----------hhhhhheeeeeccC
Confidence 32 22222 3777788888888777766 56777888888877
Q ss_pred cccccCc----ccCCCCccEEeeccC
Q 017525 240 KFRHATW----LFLAPNLKRVEIDNC 261 (370)
Q Consensus 240 ~l~~~~~----l~~l~~L~~L~L~~~ 261 (370)
.++..+. -+...-.+.|+...|
T Consensus 245 PLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 245 PLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCCCChHHHHhccceeeeeeecchhc
Confidence 7766543 233444566666655
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.7e-11 Score=107.62 Aligned_cols=88 Identities=22% Similarity=0.154 Sum_probs=49.3
Q ss_pred cCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc---CcccC
Q 017525 173 TPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA---TWLFL 249 (370)
Q Consensus 173 L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~l~~ 249 (370)
|..|++.+...+..........++.|..|+++.+.+.++..-..+ ..--...+++|++|++..|++.+. ..+..
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~---s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~ 324 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVE---SLDKTHTFPKLEYLNISENNIRDWRSLNHLRT 324 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCcc---chhhhcccccceeeecccCccccccccchhhc
Confidence 444444444444433344556677777777777777665421100 000015678888888888865444 33455
Q ss_pred CCCccEEeeccCcc
Q 017525 250 APNLKRVEIDNCQD 263 (370)
Q Consensus 250 l~~L~~L~L~~~~~ 263 (370)
+++|+.|.+..++.
T Consensus 325 l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 325 LENLKHLRITLNYL 338 (505)
T ss_pred cchhhhhhcccccc
Confidence 67777777655553
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=1.4e-10 Score=98.55 Aligned_cols=213 Identities=17% Similarity=0.120 Sum_probs=139.4
Q ss_pred hhhccccCCEEeccCCc-------cc--ccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccc
Q 017525 55 EISKVVSLQHLDLSHSR-------IE--SLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQAR 125 (370)
Q Consensus 55 ~~~~l~~L~~L~l~~~~-------l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 125 (370)
.+..+..|.+|.+++.. |. .+|..+..+.+|+.+.++.|. ...+.. +...=|.|+.+.+... .++..+
T Consensus 177 ildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~-~~~~kptl~t~~v~~s-~~~~~~ 253 (490)
T KOG1259|consen 177 VLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVD-IELLKPTLQTICVHNT-TIQDVP 253 (490)
T ss_pred HHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc-hhheec-eeecCchhheeeeecc-cccccc
Confidence 33445667777766552 11 234455567778888887772 222222 1223356777777554 333222
Q ss_pred cccc--------c----CCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCcccccccc
Q 017525 126 DSIL--------F----GDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLA 193 (370)
Q Consensus 126 ~~~~--------~----~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~ 193 (370)
.-++ + ............++.|+.+++++|.+..+..-..... .++.|+++...-.+.. .++
T Consensus 254 ~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~P----kir~L~lS~N~i~~v~---nLa 326 (490)
T KOG1259|consen 254 SLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAP----KLRRLILSQNRIRTVQ---NLA 326 (490)
T ss_pred cccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhcc----ceeEEeccccceeeeh---hhh
Confidence 1111 0 0122234456678899999999999877654332211 3677777665443333 578
Q ss_pred ccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCcchHHhhhcccc
Q 017525 194 SLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKF 273 (370)
Q Consensus 194 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 273 (370)
.+++|..||+++|.+..+..+- ..+-++++|.+++|.++++..++++-+|..|++++|. ++.+..
T Consensus 327 ~L~~L~~LDLS~N~Ls~~~Gwh----------~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~-Ie~lde---- 391 (490)
T KOG1259|consen 327 ELPQLQLLDLSGNLLAECVGWH----------LKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQ-IEELDE---- 391 (490)
T ss_pred hcccceEeecccchhHhhhhhH----------hhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccc-hhhHHH----
Confidence 8899999999999998775332 5688999999999999999889999999999999986 443321
Q ss_pred CCCcccccCCcccccccccccccccc
Q 017525 274 GEVPAEVMANLIPFARLERLILEELK 299 (370)
Q Consensus 274 ~~~~~~~~~~~~~~p~L~~L~l~~~~ 299 (370)
...++++|+|+.+.+.+++
T Consensus 392 -------V~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 392 -------VNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred -------hcccccccHHHHHhhcCCC
Confidence 1368899999999999875
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=5.6e-11 Score=105.64 Aligned_cols=215 Identities=18% Similarity=0.172 Sum_probs=140.1
Q ss_pred ccccCC-CCCCCCCEEecCCCcCCCCCh-HHHhcCCCCcEEEccCCC-----cchhhhhccccCCEEeccCCcccccCc-
Q 017525 6 ENLVES-PVCPRLRTLFLSSNIFHRVNS-DFFQSMASLRVLKWSYSN-----PLLFEISKVVSLQHLDLSHSRIESLPI- 77 (370)
Q Consensus 6 ~~l~~~-~~l~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~~~-----~~~~~~~~l~~L~~L~l~~~~l~~lp~- 77 (370)
.++.+. +++++|+.+.|.++.+...+. .....|++++.|+|+.|- .+..-...+|+|+.|+++.|++.....
T Consensus 111 Dki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 111 DKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred HHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 344444 788899999999887765553 336889999999999885 333445778999999999997753222
Q ss_pred -ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch
Q 017525 78 -EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF 156 (370)
Q Consensus 78 -~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 156 (370)
.-..+++|+.|.++.|...+.--......+|+|+.|++.+|..+. ........++.|+.|+++.|..
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~------------~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL------------IKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc------------eecchhhhhhHHhhccccCCcc
Confidence 123678889999998844332222235678899999998883221 2223344567888889998888
Q ss_pred hhhHhhhcCCCCCccccCcEEecCcC--CCCccccc---cccccCCCcEEEEecCCcccceeccCCCccccccccccccC
Q 017525 157 HAFQRLLGSCMPQYVSTPSLCLSHFN--NSKSLGVF---SLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSL 231 (370)
Q Consensus 157 ~~~~~~~~~~~~~~l~L~~l~l~~~~--~~~~~~~~---~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L 231 (370)
.++........+++ |..+.+..+. .+...+.. ....++.|++|++..|.+.++..-- -...+++|
T Consensus 259 i~~~~~~~~~~l~~--L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~--------~l~~l~nl 328 (505)
T KOG3207|consen 259 IDFDQGYKVGTLPG--LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN--------HLRTLENL 328 (505)
T ss_pred cccccccccccccc--hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccc--------hhhccchh
Confidence 77776666666665 4444444332 22222111 1356789999999998887653211 00456777
Q ss_pred cEEEEeccccc
Q 017525 232 KNVYISRSKFR 242 (370)
Q Consensus 232 ~~L~l~~~~l~ 242 (370)
+.|.+..+.++
T Consensus 329 k~l~~~~n~ln 339 (505)
T KOG3207|consen 329 KHLRITLNYLN 339 (505)
T ss_pred hhhhccccccc
Confidence 77777776553
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=1.3e-09 Score=88.13 Aligned_cols=113 Identities=24% Similarity=0.291 Sum_probs=55.0
Q ss_pred CcccccccCCC-CCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhh-hccccCCEEeccCCcccccCc
Q 017525 2 TNHIENLVESP-VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEI-SKVVSLQHLDLSHSRIESLPI 77 (370)
Q Consensus 2 ~n~l~~l~~~~-~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~-~~l~~L~~L~l~~~~l~~lp~ 77 (370)
+|.|+.+.... .+.+|++|++++|.|+.+.. +..++.|++|++++|. .+...+ ..+++|++|++++|+|..+..
T Consensus 28 ~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~ 105 (175)
T PF14580_consen 28 GNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNE 105 (175)
T ss_dssp --------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCC
T ss_pred ccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHH
Confidence 46777777664 68999999999999998865 7889999999999999 554445 468999999999999875543
Q ss_pred --ccccCCcccEEeccCcccccccC---cccccCCCCCcEEEccc
Q 017525 78 --EFKCLVNLKCLNLEYTYGISRIP---PKVISNLKILETLRMYE 117 (370)
Q Consensus 78 --~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~ 117 (370)
.++.+++|+.|++.+| .+...+ ..++..+|+|+.||-..
T Consensus 106 l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 106 LEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp CGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred hHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEE
Confidence 5778999999999998 444333 34678899999998753
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.91 E-value=2e-09 Score=100.44 Aligned_cols=175 Identities=25% Similarity=0.350 Sum_probs=90.6
Q ss_pred hcCCCCcEEEccCCC--cchhhhhccc-cCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcE
Q 017525 36 QSMASLRVLKWSYSN--PLLFEISKVV-SLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILET 112 (370)
Q Consensus 36 ~~l~~L~~L~l~~~~--~~~~~~~~l~-~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 112 (370)
...+.+..|++.++. .++.....+. +|+.|+++++.+..+|..++.+++|+.|++++| .+..++.. .+.+++|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~-~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKL-LSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhh-hhhhhhhhh
Confidence 344555555555555 4444444442 555555555555555545555555555555555 44444442 235555555
Q ss_pred EEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccc
Q 017525 113 LRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSL 192 (370)
Q Consensus 113 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l 192 (370)
|++++| .+..++ ........|+++.++.+. .... ...+
T Consensus 191 L~ls~N-~i~~l~------------~~~~~~~~L~~l~~~~N~---------------------------~~~~--~~~~ 228 (394)
T COG4886 191 LDLSGN-KISDLP------------PEIELLSALEELDLSNNS---------------------------IIEL--LSSL 228 (394)
T ss_pred eeccCC-ccccCc------------hhhhhhhhhhhhhhcCCc---------------------------ceec--chhh
Confidence 555555 444222 111122234444444332 1111 1234
Q ss_pred cccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCcch
Q 017525 193 ASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDM 264 (370)
Q Consensus 193 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~ 264 (370)
..+..+..+.+.+|.+..+.... ..++++++|++++|.+++++.++.+.+|+.|+++++...
T Consensus 229 ~~~~~l~~l~l~~n~~~~~~~~~----------~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 229 SNLKNLSGLELSNNKLEDLPESI----------GNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hhcccccccccCCceeeeccchh----------ccccccceeccccccccccccccccCccCEEeccCcccc
Confidence 45555666666666655432111 456667777777777777766667777777777776543
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=1.9e-10 Score=97.80 Aligned_cols=133 Identities=22% Similarity=0.204 Sum_probs=109.1
Q ss_pred CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcccccCCcccEEec
Q 017525 12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNL 90 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l 90 (370)
.-+..|+.+|+++|.|+.+.++ ++-.|.+++|++|+|. ..-..+..+++|+.||+++|.++++..--.++.|.++|.+
T Consensus 281 dTWq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred chHhhhhhccccccchhhhhhh-hhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 3467799999999999999888 7899999999999999 4445588999999999999998876654557889999999
Q ss_pred cCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525 91 EYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF 159 (370)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~ 159 (370)
+.| .+..+.. ++++-+|..||+.+| .+.++ .....+++++.|+.+.+.+|.....
T Consensus 360 a~N-~iE~LSG--L~KLYSLvnLDl~~N-~Ie~l----------deV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 360 AQN-KIETLSG--LRKLYSLVNLDLSSN-QIEEL----------DEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhh-hHhhhhh--hHhhhhheecccccc-chhhH----------HHhcccccccHHHHHhhcCCCcccc
Confidence 998 6665544 788899999999999 88754 3566778888888888888876543
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=1.3e-09 Score=101.82 Aligned_cols=178 Identities=26% Similarity=0.349 Sum_probs=137.0
Q ss_pred CCCCCCCCEEecCCCcCCCCChHHHhcCC-CCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccE
Q 017525 11 SPVCPRLRTLFLSSNIFHRVNSDFFQSMA-SLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKC 87 (370)
Q Consensus 11 ~~~l~~L~~L~l~~~~i~~~~~~~~~~l~-~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~ 87 (370)
...++.++.|++.++.+.++++. ..... +|++|+++++. .+|..+..+++|+.|++++|.+..+|...+..++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 35668899999999999999886 45553 99999999999 7777889999999999999999999988779999999
Q ss_pred EeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCC
Q 017525 88 LNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCM 167 (370)
Q Consensus 88 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~ 167 (370)
|+++++ .+..+|.. +..+..|+++.+.+| ... ..+..+..+.++..+.+..+....+
T Consensus 191 L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N-~~~------------~~~~~~~~~~~l~~l~l~~n~~~~~-------- 247 (394)
T COG4886 191 LDLSGN-KISDLPPE-IELLSALEELDLSNN-SII------------ELLSSLSNLKNLSGLELSNNKLEDL-------- 247 (394)
T ss_pred eeccCC-ccccCchh-hhhhhhhhhhhhcCC-cce------------ecchhhhhcccccccccCCceeeec--------
Confidence 999998 77888874 556777999999988 332 2344455555555544333322111
Q ss_pred CCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc
Q 017525 168 PQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA 244 (370)
Q Consensus 168 ~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 244 (370)
...+..++.+++|++++|.+++++. . ....++++|+++++.+..+
T Consensus 248 ---------------------~~~~~~l~~l~~L~~s~n~i~~i~~-~----------~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 248 ---------------------PESIGNLSNLETLDLSNNQISSISS-L----------GSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ---------------------cchhccccccceecccccccccccc-c----------cccCccCEEeccCcccccc
Confidence 1246667789999999999998865 2 5789999999999966654
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3.6e-11 Score=101.88 Aligned_cols=183 Identities=16% Similarity=0.113 Sum_probs=128.5
Q ss_pred CCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCcc
Q 017525 108 KILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSL 187 (370)
Q Consensus 108 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~ 187 (370)
..||++|++.. .++. ......+..+.+|+.+.+.+....+.-......+- +|+.++++.|++.+..
T Consensus 185 sRlq~lDLS~s-~it~----------stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~---~L~~lnlsm~sG~t~n 250 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITV----------STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNS---NLVRLNLSMCSGFTEN 250 (419)
T ss_pred hhhHHhhcchh-heeH----------HHHHHHHHHHHhhhhccccccccCcHHHHHHhccc---cceeeccccccccchh
Confidence 35889999876 5541 14455677778888888887765443222211111 5889999999999887
Q ss_pred ccc-cccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc--cc--cccCc-ccCCCCccEEeeccC
Q 017525 188 GVF-SLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS--KF--RHATW-LFLAPNLKRVEIDNC 261 (370)
Q Consensus 188 ~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~l--~~~~~-l~~l~~L~~L~L~~~ 261 (370)
++. .+..++.|..|+++++.+..-.....- .+.-++|+.|+|+|+ ++ +++.. ...+|+|.+|||+.|
T Consensus 251 ~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V-------~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 251 ALQLLLSSCSRLDELNLSWCFLFTEKVTVAV-------AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred HHHHHHHhhhhHhhcCchHhhccchhhhHHH-------hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence 653 466889999999999776543332211 145689999999999 33 33433 356999999999999
Q ss_pred cchHHhhhccccCCCcccccCCccccccccccccccccccc-cccCCCccCCCcceEeecCCC
Q 017525 262 QDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLK-TVHSKALPFPHLKEMSVDRCP 323 (370)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~-~i~~~~~~~~~L~~L~l~~c~ 323 (370)
..+++.. ...+-.|+.|++|.++.|+.+. .........|+|.+|++.+|-
T Consensus 324 v~l~~~~------------~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 324 VMLKNDC------------FQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cccCchH------------HHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 8877642 2356789999999999998653 222345579999999998873
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.79 E-value=1.7e-10 Score=105.86 Aligned_cols=142 Identities=24% Similarity=0.295 Sum_probs=118.2
Q ss_pred CcccccccCC-CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcc
Q 017525 2 TNHIENLVES-PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIE 78 (370)
Q Consensus 2 ~n~l~~l~~~-~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~ 78 (370)
.|++.++|.. ..|-.|..+.+.+|.+..+|+. ++++..|.+|+++.|. .+|..++.|+ |+.|-+++|+++.+|..
T Consensus 84 rNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ 161 (722)
T KOG0532|consen 84 RNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEE 161 (722)
T ss_pred ccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcc
Confidence 4677788887 6788899999999999999888 8999999999999998 8888888776 99999999999999999
Q ss_pred cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhh
Q 017525 79 FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHA 158 (370)
Q Consensus 79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~ 158 (370)
++..+.|..|+.+.| .+..+|.. ++++.+|+.|.+..| ++. ..+.++..+ .|.+||++.|++..
T Consensus 162 ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn-~l~------------~lp~El~~L-pLi~lDfScNkis~ 225 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRN-HLE------------DLPEELCSL-PLIRLDFSCNKISY 225 (722)
T ss_pred cccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhh-hhh------------hCCHHHhCC-ceeeeecccCceee
Confidence 999999999999998 66777776 899999999999999 666 344555533 35678888887766
Q ss_pred hHh
Q 017525 159 FQR 161 (370)
Q Consensus 159 ~~~ 161 (370)
++.
T Consensus 226 iPv 228 (722)
T KOG0532|consen 226 LPV 228 (722)
T ss_pred cch
Confidence 554
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.4e-10 Score=96.99 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=46.4
Q ss_pred cccccCcEEEEecc-cccc--cCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccc
Q 017525 226 SGFHSLKNVYISRS-KFRH--ATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEEL 298 (370)
Q Consensus 226 ~~~~~L~~L~l~~~-~l~~--~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 298 (370)
..+|+|..|+|+.| .+++ +..+.+++.|++|.++.|..+.... .-.+...|.|.+|++.+|
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~------------~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPET------------LLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHH------------eeeeccCcceEEEEeccc
Confidence 67889999999888 6665 3346788999999999998765332 125677889999999887
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=1.2e-08 Score=67.84 Aligned_cols=58 Identities=31% Similarity=0.410 Sum_probs=39.7
Q ss_pred CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcc
Q 017525 15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRI 72 (370)
Q Consensus 15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l 72 (370)
|+|++|++++|.++.+++.+|.++++|++|++++|. ..+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 567778888777777777667777777777777666 3334566667777777666653
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.70 E-value=3.1e-09 Score=92.26 Aligned_cols=251 Identities=17% Similarity=0.127 Sum_probs=154.2
Q ss_pred HhcCCCCcEEEccCCC-------cchhhhhccccCCEEeccCCcc----cccCc-------ccccCCcccEEeccCcccc
Q 017525 35 FQSMASLRVLKWSYSN-------PLLFEISKVVSLQHLDLSHSRI----ESLPI-------EFKCLVNLKCLNLEYTYGI 96 (370)
Q Consensus 35 ~~~l~~L~~L~l~~~~-------~~~~~~~~l~~L~~L~l~~~~l----~~lp~-------~~~~l~~L~~L~l~~~~~~ 96 (370)
...+..+..|+++++. .+...+.+.++|+..+++.-.. .++|. .+..+++|+.+++|+|-+-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 5667889999999998 4455566778899888886522 24554 2446789999999998433
Q ss_pred cccCc---ccccCCCCCcEEEccccCCCcccccccccCC--cchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCcc
Q 017525 97 SRIPP---KVISNLKILETLRMYECAALPQARDSILFGD--CRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYV 171 (370)
Q Consensus 97 ~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l 171 (370)
...+. ..+.++..|++|.+.+| .++...-+..+.. +.........-+.|+++....|+.........
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~------- 177 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATAL------- 177 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHH-------
Confidence 22221 23567889999999998 7663210000000 00011122333567777666665433221110
Q ss_pred ccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc------C
Q 017525 172 STPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA------T 245 (370)
Q Consensus 172 ~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~------~ 245 (370)
...+...+.|+.+.++.|.+..-.......+ ...+++|+.|+|..|-++.. .
T Consensus 178 -----------------A~~~~~~~~leevr~~qN~I~~eG~~al~ea-----l~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 178 -----------------AEAFQSHPTLEEVRLSQNGIRPEGVTALAEA-----LEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred -----------------HHHHHhccccceEEEecccccCchhHHHHHH-----HHhCCcceeeecccchhhhHHHHHHHH
Confidence 1234556889999999988765433211111 16799999999999955432 3
Q ss_pred cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccc----cccCCCccCCCcceEeecC
Q 017525 246 WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLK----TVHSKALPFPHLKEMSVDR 321 (370)
Q Consensus 246 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~----~i~~~~~~~~~L~~L~l~~ 321 (370)
.+..+++|++|++++|-.-..-.. .. ........|+|+.|.+.+|.--. .+.......|.|++|++.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~-a~-------~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAI-AF-------VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HhcccchheeecccccccccccHH-HH-------HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 466789999999999974332110 00 01233458999999999984321 1222344588999999988
Q ss_pred CC
Q 017525 322 CP 323 (370)
Q Consensus 322 c~ 323 (370)
|.
T Consensus 308 N~ 309 (382)
T KOG1909|consen 308 NR 309 (382)
T ss_pred cc
Confidence 75
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=3.1e-08 Score=65.85 Aligned_cols=58 Identities=34% Similarity=0.568 Sum_probs=45.2
Q ss_pred ccCCEEeccCCcccccCc-ccccCCcccEEeccCcccccccCcccccCCCCCcEEEcccc
Q 017525 60 VSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC 118 (370)
Q Consensus 60 ~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 118 (370)
++|++|++++|+++.+|. .+..+++|++|++++| .+..++.++|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 467888888888887775 5677888888888877 566677666888888888888877
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.54 E-value=1.6e-08 Score=85.03 Aligned_cols=243 Identities=19% Similarity=0.155 Sum_probs=150.1
Q ss_pred CCCCCCEEecCCCcCCCC----ChHHHhcCCCCcEEEccCCC------cch-------hhhhccccCCEEeccCCccc-c
Q 017525 13 VCPRLRTLFLSSNIFHRV----NSDFFQSMASLRVLKWSYSN------PLL-------FEISKVVSLQHLDLSHSRIE-S 74 (370)
Q Consensus 13 ~l~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~------~~~-------~~~~~l~~L~~L~l~~~~l~-~ 74 (370)
-+..++.++|++|.|..- -+..+.+-++|++.++++-- +++ ..+-.||+|+..+++.|.+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 356788899999987631 22335667888888888754 222 34567889999999998764 3
Q ss_pred cCc----ccccCCcccEEeccCcccccccCcccc-------------cCCCCCcEEEccccCCCcccccccccCCcchhh
Q 017525 75 LPI----EFKCLVNLKCLNLEYTYGISRIPPKVI-------------SNLKILETLRMYECAALPQARDSILFGDCRVLV 137 (370)
Q Consensus 75 lp~----~~~~l~~L~~L~l~~~~~~~~~~~~~~-------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 137 (370)
.|+ .+++-+.|++|.+++| .++.+..+-+ ..-|.|+......| .+.+-+ ..-..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs-------~~~~a 178 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGS-------KELSA 178 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCc-------HHHHH
Confidence 343 4677888999999888 5554433222 23467888877777 555321 11223
Q ss_pred hhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCC
Q 017525 138 EELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGG 217 (370)
Q Consensus 138 ~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~ 217 (370)
..+..+.+|+++.+..|.+..- +++......+..+.+|+.|++..|.++..+....+
T Consensus 179 ~~l~sh~~lk~vki~qNgIrpe-----------------------gv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 179 ALLESHENLKEVKIQQNGIRPE-----------------------GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred HHHHhhcCceeEEeeecCcCcc-----------------------hhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 3445556777777776654211 00111112345667899999999888766543322
Q ss_pred CccccccccccccCcEEEEecccccc--cCc----c--cCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccc
Q 017525 218 EVKRVLEISGFHSLKNVYISRSKFRH--ATW----L--FLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFAR 289 (370)
Q Consensus 218 ~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~----l--~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 289 (370)
..- ..++.|+.|.+..|-++. ... + ...|+|..|-..++..-.+++...++.. ..-...|-
T Consensus 236 ~al-----~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~------~e~~~~p~ 304 (388)
T COG5238 236 DAL-----CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNE------FEQDAVPL 304 (388)
T ss_pred HHh-----cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhh------hhhcccHH
Confidence 111 346779999999994433 221 1 2478999999988876655543222211 13356788
Q ss_pred ccccccccc
Q 017525 290 LERLILEEL 298 (370)
Q Consensus 290 L~~L~l~~~ 298 (370)
|..|.+.++
T Consensus 305 L~~le~ngN 313 (388)
T COG5238 305 LVDLERNGN 313 (388)
T ss_pred HHHHHHccC
Confidence 888888765
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.53 E-value=2.7e-07 Score=90.71 Aligned_cols=103 Identities=22% Similarity=0.298 Sum_probs=72.1
Q ss_pred CCEEecCCCcCC-CCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCccc-ccCcccccCCcccEEecc
Q 017525 17 LRTLFLSSNIFH-RVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIE-SLPIEFKCLVNLKCLNLE 91 (370)
Q Consensus 17 L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~ 91 (370)
++.|+|++|.+. .+|.. +..+++|+.|+|++|. .+|..++.+++|++|++++|.++ .+|..++.+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 667777777776 34544 6777888888887776 66777777778888888887775 677777777788888887
Q ss_pred CcccccccCcccccC-CCCCcEEEccccCCC
Q 017525 92 YTYGISRIPPKVISN-LKILETLRMYECAAL 121 (370)
Q Consensus 92 ~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~ 121 (370)
+|...+.+|.. +.. ..++..+++.+|..+
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCccc
Confidence 77666667765 443 345666777766333
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.52 E-value=1.1e-08 Score=95.82 Aligned_cols=214 Identities=23% Similarity=0.207 Sum_probs=120.2
Q ss_pred CCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEecc
Q 017525 14 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLE 91 (370)
Q Consensus 14 l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 91 (370)
+..+..+.+..+.+..+-.. +..+++|..|++.++. .+...+..+++|++|++++|.|+.+. .+..++.|+.|++.
T Consensus 71 l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhhhhcc-cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheec
Confidence 44555555666666553222 4667777777777777 33333667777888888888777664 45566667788887
Q ss_pred CcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCcc
Q 017525 92 YTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYV 171 (370)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l 171 (370)
+| .+..+.. +..+++|+.+++++| .+..++ .. . +..+.+++.+.+..+.+..+..+.....+..+
T Consensus 149 ~N-~i~~~~~--~~~l~~L~~l~l~~n-~i~~ie---------~~-~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~ 213 (414)
T KOG0531|consen 149 GN-LISDISG--LESLKSLKLLDLSYN-RIVDIE---------ND-E-LSELISLEELDLGGNSIREIEGLDLLKKLVLL 213 (414)
T ss_pred cC-cchhccC--CccchhhhcccCCcc-hhhhhh---------hh-h-hhhccchHHHhccCCchhcccchHHHHHHHHh
Confidence 77 5555544 455777777777777 554322 00 1 35556666667776666554433322221110
Q ss_pred ccCcEEecCcCCCCccccccccccCC--CcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccC
Q 017525 172 STPSLCLSHFNNSKSLGVFSLASLRH--LQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFL 249 (370)
Q Consensus 172 ~L~~l~l~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~ 249 (370)
.+..-.+... ..+..+.. |+.+++++|.+..++... ..+..+..|++.++++.....+..
T Consensus 214 ~l~~n~i~~~--------~~l~~~~~~~L~~l~l~~n~i~~~~~~~----------~~~~~l~~l~~~~n~~~~~~~~~~ 275 (414)
T KOG0531|consen 214 SLLDNKISKL--------EGLNELVMLHLRELYLSGNRISRSPEGL----------ENLKNLPVLDLSSNRISNLEGLER 275 (414)
T ss_pred hcccccceec--------cCcccchhHHHHHHhcccCccccccccc----------cccccccccchhhccccccccccc
Confidence 0111111100 11222222 777777777776553111 456777777777776666555555
Q ss_pred CCCccEEeeccCc
Q 017525 250 APNLKRVEIDNCQ 262 (370)
Q Consensus 250 l~~L~~L~L~~~~ 262 (370)
.+.+..+....+.
T Consensus 276 ~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 276 LPKLSELWLNDNK 288 (414)
T ss_pred cchHHHhccCcch
Confidence 5555555555544
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=3.9e-07 Score=77.82 Aligned_cols=219 Identities=16% Similarity=0.101 Sum_probs=117.1
Q ss_pred EEecCCCcCCCCCh--HHHhcCCCCcEEEccCCC-----cchhhhhccccCCEEeccCCccc----ccCcccccCCcccE
Q 017525 19 TLFLSSNIFHRVNS--DFFQSMASLRVLKWSYSN-----PLLFEISKVVSLQHLDLSHSRIE----SLPIEFKCLVNLKC 87 (370)
Q Consensus 19 ~L~l~~~~i~~~~~--~~~~~l~~L~~L~l~~~~-----~~~~~~~~l~~L~~L~l~~~~l~----~lp~~~~~l~~L~~ 87 (370)
.|-+.++.|..... .+-..+..++.++|.+|. ++...+.++|+|++|+++.|.+. .+| ....+|+.
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~ 125 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRV 125 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEE
Confidence 45555666654322 233457788888888887 55666678888888888888654 333 24557788
Q ss_pred EeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCC
Q 017525 88 LNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCM 167 (370)
Q Consensus 88 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~ 167 (370)
|-+.+....+.-....+..+|.++.|.++.| .+..+- .+++.. -.-.+.++++.+..|....+........
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N-~~rq~n----~Dd~c~----e~~s~~v~tlh~~~c~~~~w~~~~~l~r 196 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN-SLRQLN----LDDNCI----EDWSTEVLTLHQLPCLEQLWLNKNKLSR 196 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccc-hhhhhc----cccccc----cccchhhhhhhcCCcHHHHHHHHHhHHh
Confidence 8887763322222223567777888877777 332111 010000 0122355556666665555444333322
Q ss_pred CCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCccccee-ccCCCccccccccccccCcEEEEeccccccc-C
Q 017525 168 PQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKI-DNGGEVKRVLEISGFHSLKNVYISRSKFRHA-T 245 (370)
Q Consensus 168 ~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~ 245 (370)
.-. ++..+.+.+++-.+...-.....+|.+..|+++.+.+.+.+. +.. ..++.|..|-++++.+.+. .
T Consensus 197 ~Fp-nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~L---------n~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 197 IFP-NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDAL---------NGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hcc-cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHH---------cCCchhheeeccCCccccccc
Confidence 111 344444444443333323344555666677777666655432 111 4566777776666644331 1
Q ss_pred -------cccCCCCccEEeec
Q 017525 246 -------WLFLAPNLKRVEID 259 (370)
Q Consensus 246 -------~l~~l~~L~~L~L~ 259 (370)
-++.+++++.|+=+
T Consensus 267 ~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 267 GGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCcceEEEEeeccceEEecCc
Confidence 13456666666433
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.28 E-value=1.1e-07 Score=89.20 Aligned_cols=192 Identities=22% Similarity=0.304 Sum_probs=132.0
Q ss_pred hcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEE
Q 017525 36 QSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETL 113 (370)
Q Consensus 36 ~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 113 (370)
..+..+..+.+..+. ..-..++.+.+|++|++.+|.++.+...+..+++|++|++++| .++.+.. +..++.|+.|
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~L 145 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKEL 145 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc--hhhccchhhh
Confidence 356666667777766 3344578889999999999999888765889999999999998 6666654 6788889999
Q ss_pred EccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhh--hcCCCCCccccCcEEecCcCCCCcccccc
Q 017525 114 RMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRL--LGSCMPQYVSTPSLCLSHFNNSKSLGVFS 191 (370)
Q Consensus 114 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~--~~~~~~~~l~L~~l~l~~~~~~~~~~~~~ 191 (370)
++.+| .+.. +..+..+..|+.++++.+.+..++.. ..... ++.+.+......... .
T Consensus 146 ~l~~N-~i~~-------------~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~-----l~~l~l~~n~i~~i~---~ 203 (414)
T KOG0531|consen 146 NLSGN-LISD-------------ISGLESLKSLKLLDLSYNRIVDIENDELSELIS-----LEELDLGGNSIREIE---G 203 (414)
T ss_pred eeccC-cchh-------------ccCCccchhhhcccCCcchhhhhhhhhhhhccc-----hHHHhccCCchhccc---c
Confidence 99999 7753 33455588888899998888777662 33332 444444443332222 2
Q ss_pred ccccCCCcEEEEecCCcccceeccCCCccccccccccc--cCcEEEEeccccccc-CcccCCCCccEEeeccCcc
Q 017525 192 LASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFH--SLKNVYISRSKFRHA-TWLFLAPNLKRVEIDNCQD 263 (370)
Q Consensus 192 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~l~~~-~~l~~l~~L~~L~L~~~~~ 263 (370)
+..+..+..+++..|.+..+... .... +|+.+++.++++... ..+..+.+++.|++..+..
T Consensus 204 ~~~~~~l~~~~l~~n~i~~~~~l-----------~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 204 LDLLKKLVLLSLLDNKISKLEGL-----------NELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred hHHHHHHHHhhcccccceeccCc-----------ccchhHHHHHHhcccCccccccccccccccccccchhhccc
Confidence 33334444556666777665321 1223 388999999977776 5677788888888887653
No 48
>PLN03150 hypothetical protein; Provisional
Probab=98.25 E-value=2.4e-06 Score=84.04 Aligned_cols=80 Identities=25% Similarity=0.357 Sum_probs=59.0
Q ss_pred CcEEEccCCC---cchhhhhccccCCEEeccCCccc-ccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEcc
Q 017525 41 LRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIE-SLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116 (370)
Q Consensus 41 L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 116 (370)
++.|+|+++. .+|..++.+++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence 6667777776 66777777788888888887775 67777777788888888877665666665 7777888888887
Q ss_pred ccCCCc
Q 017525 117 ECAALP 122 (370)
Q Consensus 117 ~~~~~~ 122 (370)
+| .+.
T Consensus 499 ~N-~l~ 503 (623)
T PLN03150 499 GN-SLS 503 (623)
T ss_pred CC-ccc
Confidence 77 443
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.08 E-value=1.9e-06 Score=84.74 Aligned_cols=137 Identities=20% Similarity=0.119 Sum_probs=90.2
Q ss_pred CCCCCEEecCCC-cCC-CCChHHHhcCCCCcEEEccCCC----cchhhhhccccCCEEeccCCcccccCcccccCCcccE
Q 017525 14 CPRLRTLFLSSN-IFH-RVNSDFFQSMASLRVLKWSYSN----PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKC 87 (370)
Q Consensus 14 l~~L~~L~l~~~-~i~-~~~~~~~~~l~~L~~L~l~~~~----~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~ 87 (370)
-.+|+.|++++. .+. ..+...-..+|.|+.|.+++-. ++.....++|+|+.||+++++++.+ .+++++++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 357888888887 333 4444545568999999998876 4445556788999999999998877 57889999999
Q ss_pred EeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525 88 LNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH 157 (370)
Q Consensus 88 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~ 157 (370)
|.+.+=..........+.+|++|++||++....... + ..-......-..+++|+.||.++....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~-----~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD-T-----KIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccc-h-----HHHHHHHHhcccCccccEEecCCcchh
Confidence 888765333222222367889999999987622221 0 000011222234678888888876543
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.05 E-value=1.1e-07 Score=90.33 Aligned_cols=129 Identities=26% Similarity=0.303 Sum_probs=79.1
Q ss_pred CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcc-cccCCcccEEe
Q 017525 12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIE-FKCLVNLKCLN 89 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~ 89 (370)
...-.|.+.+.+.|.+..+... +.-++.|+.|+|+.|+ .--+.+..|++|++|||++|.+..+|.. ...+. |+.|.
T Consensus 161 ~~Wn~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLMDES-LQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hhhhhHhhhhcchhhHHhHHHH-HHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeee
Confidence 3445566666666666666555 6667777777777777 4344667777777777777777766652 22333 77777
Q ss_pred ccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch
Q 017525 90 LEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF 156 (370)
Q Consensus 90 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~ 156 (370)
+++| .+..+-. +.++++|+.||+++| .+.+. .....+..+..|+.|.+.+|..
T Consensus 239 lrnN-~l~tL~g--ie~LksL~~LDlsyN-ll~~h----------seL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRNN-ALTTLRG--IENLKSLYGLDLSYN-LLSEH----------SELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eccc-HHHhhhh--HHhhhhhhccchhHh-hhhcc----------hhhhHHHHHHHHHHHhhcCCcc
Confidence 7776 4444433 667777777777777 44321 2233344455566666666543
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.03 E-value=5.8e-06 Score=50.42 Aligned_cols=34 Identities=44% Similarity=0.617 Sum_probs=21.9
Q ss_pred ccCCEEeccCCcccccCcccccCCcccEEeccCc
Q 017525 60 VSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYT 93 (370)
Q Consensus 60 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 93 (370)
++|++|++++|+++.+|..++++++|+.|++++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 3566777777777766665667777777777766
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=3.2e-06 Score=72.39 Aligned_cols=210 Identities=14% Similarity=0.092 Sum_probs=121.7
Q ss_pred CCCCCCCEEecCCCcCCCCCh--HHHhcCCCCcEEEccCCC--cchhhh-hccccCCEEeccCCcc--cccCcccccCCc
Q 017525 12 PVCPRLRTLFLSSNIFHRVNS--DFFQSMASLRVLKWSYSN--PLLFEI-SKVVSLQHLDLSHSRI--ESLPIEFKCLVN 84 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~--~~~~~l~~L~~L~l~~~~--~~~~~~-~~l~~L~~L~l~~~~l--~~lp~~~~~l~~ 84 (370)
..++.++.++|.+|.|+...+ .++.++|.|++|+++.|+ ..-... -.+.+|+.|.+.++.+ +........+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 467889999999998875433 347889999999999997 111111 3557899999999976 355566778999
Q ss_pred ccEEeccCccccc-ccCcccccC-CCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhh
Q 017525 85 LKCLNLEYTYGIS-RIPPKVISN-LKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRL 162 (370)
Q Consensus 85 L~~L~l~~~~~~~-~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~ 162 (370)
++.|+++.|..-. .+...-+.. -+.++.+....| ....|. ....-...++++..+-+..+...+....
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c-~~~~w~---------~~~~l~r~Fpnv~sv~v~e~PlK~~s~e 217 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPC-LEQLWL---------NKNKLSRIFPNVNSVFVCEGPLKTESSE 217 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCc-HHHHHH---------HHHhHHhhcccchheeeecCcccchhhc
Confidence 9999999873211 011110111 224555656555 333222 1222223346777666666655444333
Q ss_pred hcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEE
Q 017525 163 LGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYI 236 (370)
Q Consensus 163 ~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 236 (370)
.....++. +..|.++...--....+..+.+++.|+.|.++.+.+.+--. +..+..+-+..+++++.|+=
T Consensus 218 k~se~~p~--~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~---~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 218 KGSEPFPS--LSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR---GGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred ccCCCCCc--chhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc---CCcceEEEEeeccceEEecC
Confidence 32222222 22333333333334445678889999999999876654311 11111122256777777643
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.96 E-value=2.8e-07 Score=87.51 Aligned_cols=128 Identities=20% Similarity=0.155 Sum_probs=83.9
Q ss_pred CCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCcccc
Q 017525 143 LEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRV 222 (370)
Q Consensus 143 l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~ 222 (370)
+..|.+.+++.|....+..-..... +++.|++++.+-.... .+..++.|++|||+.|.+..++-...
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~----ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~------ 229 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLP----ALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSM------ 229 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHH----HhhhhccchhhhhhhH---HHHhcccccccccccchhccccccch------
Confidence 3455555566665543332221111 3555555544332222 56678899999999999998864321
Q ss_pred ccccccccCcEEEEecccccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccc
Q 017525 223 LEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK 299 (370)
Q Consensus 223 ~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 299 (370)
..+. |+.|+|++|.++.+..+.++.+|+.||+++|-...+-- ...+..+..|+.|.|.+++
T Consensus 230 ---~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hse------------L~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 230 ---VGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSE------------LEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ---hhhh-heeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchh------------hhHHHHHHHHHHHhhcCCc
Confidence 3344 99999999998888888899999999999986544321 1256677788888888764
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=2e-05 Score=48.09 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=18.0
Q ss_pred CCcEEEccCCC--cchhhhhccccCCEEeccCCccccc
Q 017525 40 SLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESL 75 (370)
Q Consensus 40 ~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~l 75 (370)
+|++|++++|. .+|..++++++|++|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 34444444444 3444455555555555555555544
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.82 E-value=2.2e-05 Score=63.64 Aligned_cols=89 Identities=19% Similarity=0.241 Sum_probs=68.6
Q ss_pred cccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccc---cccCcccCCCCccEEeeccCcchHHh
Q 017525 191 SLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKF---RHATWLFLAPNLKRVEIDNCQDMKEI 267 (370)
Q Consensus 191 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l---~~~~~l~~l~~L~~L~L~~~~~~~~~ 267 (370)
.|..++.|.+|.+..|+++.++.... ..+++|+.|.+.+|++ .++..+..+|.|+.|.+-+|+... .
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~---------~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~-k 128 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLD---------TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH-K 128 (233)
T ss_pred cCCCccccceEEecCCcceeeccchh---------hhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhc-c
Confidence 56778899999999999999876553 5688999999999854 456678899999999999887422 2
Q ss_pred hhccccCCCcccccCCccccccccccccccc
Q 017525 268 IDSEKFGEVPAEVMANLIPFARLERLILEEL 298 (370)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 298 (370)
.++. ...+..+|+|+.|++++-
T Consensus 129 ---~~YR------~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 129 ---KNYR------LYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ---cCce------eEEEEecCcceEeehhhh
Confidence 1111 136778999999999875
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.80 E-value=4e-05 Score=62.15 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=72.4
Q ss_pred CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c-chhhhhccccCCEEeccCCcccccCc--ccccCCcccEEe
Q 017525 15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P-LLFEISKVVSLQHLDLSHSRIESLPI--EFKCLVNLKCLN 89 (370)
Q Consensus 15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~-~~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~ 89 (370)
.....+||++|++..++- +..++.|.+|.+.+|. . .|.--..+++|..|.+.+|++..+.. .+..||+|+.|.
T Consensus 42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 456678888887776654 6788888888888888 3 33333446778888888888765543 466788888888
Q ss_pred ccCccccc---ccCcccccCCCCCcEEEcccc
Q 017525 90 LEYTYGIS---RIPPKVISNLKILETLRMYEC 118 (370)
Q Consensus 90 l~~~~~~~---~~~~~~~~~l~~L~~L~l~~~ 118 (370)
+-+| .+. .+...++..+++|++||+.+-
T Consensus 120 ll~N-pv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCC-chhcccCceeEEEEecCcceEeehhhh
Confidence 8776 332 344556888999999988743
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=0.00019 Score=65.67 Aligned_cols=54 Identities=26% Similarity=0.397 Sum_probs=26.1
Q ss_pred cccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEcccc
Q 017525 59 VVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC 118 (370)
Q Consensus 59 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 118 (370)
+.+++.|++++|.++.+|. --.+|+.|.+++|..+..+|.. + .++|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCc
Confidence 4555555555555555551 1223555555555444444432 2 134555555554
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.63 E-value=4.1e-05 Score=75.54 Aligned_cols=110 Identities=25% Similarity=0.263 Sum_probs=81.9
Q ss_pred CCCCCCCEEecCCCcCCCC-ChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccC--cccccCCcccE
Q 017525 12 PVCPRLRTLFLSSNIFHRV-NSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLP--IEFKCLVNLKC 87 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~ 87 (370)
.-+|.|+.|.+.+-.+..- -.....++++|..||+|+++ ....+++++++|+.|.+.+-.+..-. ..+..+++|+.
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 4689999999998755421 22346889999999999999 55588999999999999887765332 25678999999
Q ss_pred EeccCccccccc--Ccc---cccCCCCCcEEEccccCCCc
Q 017525 88 LNLEYTYGISRI--PPK---VISNLKILETLRMYECAALP 122 (370)
Q Consensus 88 L~l~~~~~~~~~--~~~---~~~~l~~L~~L~l~~~~~~~ 122 (370)
||+|..+..... ... --..||.|+.||.+++ .+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~ 263 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DIN 263 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCc-chh
Confidence 999987443321 100 0135899999999988 554
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=3.8e-06 Score=71.29 Aligned_cols=101 Identities=24% Similarity=0.205 Sum_probs=81.5
Q ss_pred CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCc--ccccCCcccEE
Q 017525 12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPI--EFKCLVNLKCL 88 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L 88 (370)
+++.+++.|++.+|.+++|.- ...|+.|++|.|+-|+ .....+..|++|++|+|..|.|..+.. .+.++|+|+.|
T Consensus 16 sdl~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred hHHHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 567889999999999987754 6899999999999999 666778999999999999999876654 57889999999
Q ss_pred eccCccccccc----CcccccCCCCCcEEE
Q 017525 89 NLEYTYGISRI----PPKVISNLKILETLR 114 (370)
Q Consensus 89 ~l~~~~~~~~~----~~~~~~~l~~L~~L~ 114 (370)
-|..|-..+.- ...++.-|++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99877544432 233566788888775
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.55 E-value=9.1e-06 Score=77.90 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=22.1
Q ss_pred cccccccccccccccccCCCcc--CCCcceEeecCCCCCCCCC
Q 017525 289 RLERLILEELKNLKTVHSKALP--FPHLKEMSVDRCPLLKKLP 329 (370)
Q Consensus 289 ~L~~L~l~~~~~l~~i~~~~~~--~~~L~~L~l~~c~~L~~l~ 329 (370)
.++.|.++.|...+.-...... ...++.+.+.+|+.+....
T Consensus 402 ~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred ccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 3667777766554433222111 4556666666666665433
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.50 E-value=9.3e-06 Score=77.83 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=25.1
Q ss_pred ccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccc
Q 017525 253 LKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTV 304 (370)
Q Consensus 253 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i 304 (370)
++.|+++.|..+++..- ......+..++.+.+.+|..+...
T Consensus 403 l~~L~l~~~~~~t~~~l-----------~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGL-----------RCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cceEecccCccccccch-----------HHHhhhhhccccCCccCcccccch
Confidence 78888888876654421 011111667788888887665544
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.39 E-value=2.6e-05 Score=59.24 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=73.5
Q ss_pred CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEe
Q 017525 12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN 89 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 89 (370)
..-..|+..++++|.++.+|+.+...++.+..|++++|. .+|..+..++.|+.|+++.|.+...|..+..+.++-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 445677888999999999999877777899999999998 888888889999999999999988888887788888888
Q ss_pred ccCcccccccCc
Q 017525 90 LEYTYGISRIPP 101 (370)
Q Consensus 90 l~~~~~~~~~~~ 101 (370)
...+ ....++.
T Consensus 130 s~~n-a~~eid~ 140 (177)
T KOG4579|consen 130 SPEN-ARAEIDV 140 (177)
T ss_pred CCCC-ccccCcH
Confidence 8776 4444443
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.33 E-value=0.0006 Score=62.49 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=45.6
Q ss_pred CCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCC-cccccCcccccCCcccEE
Q 017525 13 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHS-RIESLPIEFKCLVNLKCL 88 (370)
Q Consensus 13 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L 88 (370)
.+.+++.|++++|.++.+|. + -.+|++|.+++|. .+|..+ .++|++|++++| .+..+|.. |+.|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceE
Confidence 46778888888887777762 1 1358888888877 455444 257888888887 66666653 5555
Q ss_pred eccC
Q 017525 89 NLEY 92 (370)
Q Consensus 89 ~l~~ 92 (370)
++..
T Consensus 118 ~L~~ 121 (426)
T PRK15386 118 EIKG 121 (426)
T ss_pred EeCC
Confidence 5544
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.23 E-value=7e-05 Score=56.99 Aligned_cols=111 Identities=21% Similarity=0.232 Sum_probs=87.0
Q ss_pred CCCCCCCEEecCCCcCCCCChH--HHhcCCCCcEEEccCCC--cchhhhhc-cccCCEEeccCCcccccCcccccCCccc
Q 017525 12 PVCPRLRTLFLSSNIFHRVNSD--FFQSMASLRVLKWSYSN--PLLFEISK-VVSLQHLDLSHSRIESLPIEFKCLVNLK 86 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~--~~~~l~~L~~L~l~~~~--~~~~~~~~-l~~L~~L~l~~~~l~~lp~~~~~l~~L~ 86 (370)
.+-..+..++|++|++-.++.. .+....+|..+++++|. .+|..+.. .+.++.|++.+|.+..+|..+..++.|+
T Consensus 24 edakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 24 EDAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALR 103 (177)
T ss_pred HHHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhh
Confidence 3445667789999987766553 24556678888999998 77777754 4589999999999999999999999999
Q ss_pred EEeccCcccccccCcccccCCCCCcEEEccccCCCcccc
Q 017525 87 CLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQAR 125 (370)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 125 (370)
.++++.| .+...|.- +..+.++-.|+..+| ....++
T Consensus 104 ~lNl~~N-~l~~~p~v-i~~L~~l~~Lds~~n-a~~eid 139 (177)
T KOG4579|consen 104 SLNLRFN-PLNAEPRV-IAPLIKLDMLDSPEN-ARAEID 139 (177)
T ss_pred hcccccC-ccccchHH-HHHHHhHHHhcCCCC-ccccCc
Confidence 9999998 55666654 667999999999888 444433
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.12 E-value=0.00026 Score=60.17 Aligned_cols=219 Identities=15% Similarity=0.067 Sum_probs=118.5
Q ss_pred CCCCCCEEecCCCcCC----CCCh------HHHhcCCCCcEEEccCCC---c----chhhhhccccCCEEeccCCccccc
Q 017525 13 VCPRLRTLFLSSNIFH----RVNS------DFFQSMASLRVLKWSYSN---P----LLFEISKVVSLQHLDLSHSRIESL 75 (370)
Q Consensus 13 ~l~~L~~L~l~~~~i~----~~~~------~~~~~l~~L~~L~l~~~~---~----~~~~~~~l~~L~~L~l~~~~l~~l 75 (370)
+-.+|++.++++-... .++. .++..|++|+.++||+|. . +...+++-+.|.+|.+.+|++..+
T Consensus 56 ~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 56 NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 4566777777664222 1222 124577888888888886 2 234456667888888888876532
Q ss_pred C--------------cccccCCcccEEeccCcccccccCcc----cccCCCCCcEEEccccCCCcccccccccCCcchhh
Q 017525 76 P--------------IEFKCLVNLKCLNLEYTYGISRIPPK----VISNLKILETLRMYECAALPQARDSILFGDCRVLV 137 (370)
Q Consensus 76 p--------------~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 137 (370)
. +....-|.|+......|+.-. .+.. .+..=..|+++.+..| .+..- +...-..
T Consensus 136 aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~lk~vki~qN-gIrpe------gv~~L~~ 207 (388)
T COG5238 136 AGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENLKEVKIQQN-GIRPE------GVTMLAF 207 (388)
T ss_pred chhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCceeEEeeec-CcCcc------hhHHHHH
Confidence 1 123456788888888874422 2211 1222357788888887 55421 1111233
Q ss_pred hhcccCCCccEEEEEecchhhhHh--hhcCCCCCccccCcEEecCcCCCCcccc---cccc--ccCCCcEEEEecCCccc
Q 017525 138 EELLGLEHLSVFTITLNNFHAFQR--LLGSCMPQYVSTPSLCLSHFNNSKSLGV---FSLA--SLRHLQTLQLTYNDLDE 210 (370)
Q Consensus 138 ~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~L~~l~l~~~~~~~~~~~---~~l~--~l~~L~~L~l~~~~l~~ 210 (370)
..+..+++|+.|++..|.++...+ +.....-.. .++.|.+++|-....-.. ..+. ..|+|..|...+|.+..
T Consensus 208 ~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 208 LGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred HHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 445667888888888876644322 111111122 367888888854332211 1222 34677888777765432
Q ss_pred --ceeccCCCccccccccccccCcEEEEeccccccc
Q 017525 211 --IKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA 244 (370)
Q Consensus 211 --~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 244 (370)
+-..++.. +-+...|-|..|.+.||+++..
T Consensus 287 ~~i~~~~l~~----~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 287 GIILDISLNE----FEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred ceeeeechhh----hhhcccHHHHHHHHccCcchhH
Confidence 11111111 1124555666666666655443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.05 E-value=0.00018 Score=60.87 Aligned_cols=57 Identities=32% Similarity=0.326 Sum_probs=23.8
Q ss_pred cCCCCcEEEccCCC-----cchhhhhccccCCEEeccCCcccccC--cccccCCcccEEeccCc
Q 017525 37 SMASLRVLKWSYSN-----PLLFEISKVVSLQHLDLSHSRIESLP--IEFKCLVNLKCLNLEYT 93 (370)
Q Consensus 37 ~l~~L~~L~l~~~~-----~~~~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~ 93 (370)
.+++|+.|.++.|. .++.....+++|++|++++|++..+. .....+.+|..|++.+|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence 34445555555442 22222233355555555555443111 02334444445555444
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.99 E-value=0.0018 Score=49.86 Aligned_cols=101 Identities=18% Similarity=0.322 Sum_probs=47.1
Q ss_pred CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cch-hhhhccccCCEEeccCCcccccCc-ccccCCcccEE
Q 017525 12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLL-FEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCL 88 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L 88 (370)
.++++|+.+.+.. .+..++...|.++++|+.+.+..+- .++ ..+.++++++.+.+.. .+..++. .+..+++|+.+
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred hCCCCCCEEEECC-CeeEeChhhcccccccccccccccccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 4556677777664 4556666666777777777766543 222 3445565677777654 4443433 34456677777
Q ss_pred eccCcccccccCcccccCCCCCcEEEccc
Q 017525 89 NLEYTYGISRIPPKVISNLKILETLRMYE 117 (370)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 117 (370)
.+..+ +..++...+.++ +|+.+.+..
T Consensus 87 ~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 87 DIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 76543 444444446665 666666553
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=4.5e-05 Score=64.91 Aligned_cols=61 Identities=18% Similarity=0.329 Sum_probs=33.9
Q ss_pred cccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc---CcccCCCCccEEeeccCc
Q 017525 191 SLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA---TWLFLAPNLKRVEIDNCQ 262 (370)
Q Consensus 191 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~l~~l~~L~~L~L~~~~ 262 (370)
...+++.|+.|.|+-|.++.+.. ...|++|+.|+|..|.+.++ ..+..+|+|+.|.|..|+
T Consensus 36 ic~kMp~lEVLsLSvNkIssL~p-----------l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSLAP-----------LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred HHHhcccceeEEeeccccccchh-----------HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 44556666666666666655531 14566666666666544433 334556666666665543
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.65 E-value=0.0038 Score=48.00 Aligned_cols=103 Identities=20% Similarity=0.376 Sum_probs=58.3
Q ss_pred ccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cch-hhhhccccCCEEeccCCcccccCc-c
Q 017525 4 HIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLL-FEISKVVSLQHLDLSHSRIESLPI-E 78 (370)
Q Consensus 4 ~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~~L~~L~l~~~~l~~lp~-~ 78 (370)
.++.++.. ..+++|+.+.+.++ +..++...|.+++.++.+.+...- .++ ..+..+++|+.+.+..+ +..++. .
T Consensus 22 ~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~ 99 (129)
T PF13306_consen 22 TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSS 99 (129)
T ss_dssp T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEETTT--BEEHTTT
T ss_pred CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccccccccccccccccccccccccCcc-ccEEchhh
Confidence 45666665 67789999999885 888888889999999999997754 333 45667999999999775 655554 4
Q ss_pred cccCCcccEEeccCcccccccCcccccCCCCCc
Q 017525 79 FKCLVNLKCLNLEYTYGISRIPPKVISNLKILE 111 (370)
Q Consensus 79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 111 (370)
+..+ +|+.+.+.. .+..++...|.++++|+
T Consensus 100 f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 100 FSNC-NLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTT--T--EEE-TT--B-SS----GGG------
T ss_pred hcCC-CceEEEECC--CccEECCccccccccCC
Confidence 5666 899998875 35566666688887764
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.00025 Score=57.67 Aligned_cols=85 Identities=19% Similarity=0.334 Sum_probs=56.4
Q ss_pred CcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc-cccc--cCccc-CCCCccEEeeccCcchHHhhhcccc
Q 017525 198 LQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS-KFRH--ATWLF-LAPNLKRVEIDNCQDMKEIIDSEKF 273 (370)
Q Consensus 198 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~--~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~ 273 (370)
++.++-++..+...+.+-+ ..++.++.|.+.+| .+.+ +..++ -.++|+.|+|++|+.|++-.
T Consensus 103 IeaVDAsds~I~~eGle~L---------~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G----- 168 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHL---------RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG----- 168 (221)
T ss_pred EEEEecCCchHHHHHHHHH---------hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-----
Confidence 4455555544444433322 56778888888888 6655 33343 36788999999888888753
Q ss_pred CCCcccccCCcccccccccccccccccccc
Q 017525 274 GEVPAEVMANLIPFARLERLILEELKNLKT 303 (370)
Q Consensus 274 ~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~ 303 (370)
...+..+++|+.|.|.+.+.+..
T Consensus 169 -------L~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 169 -------LACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred -------HHHHHHhhhhHHHHhcCchhhhc
Confidence 14677888888888888766544
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.24 E-value=0.0031 Score=53.52 Aligned_cols=89 Identities=26% Similarity=0.274 Sum_probs=63.5
Q ss_pred ccccccCCCCCCCCCEEecCCC--cCC-CCChHHHhcCCCCcEEEccCCC-cchhhh---hccccCCEEeccCCcccccC
Q 017525 4 HIENLVESPVCPRLRTLFLSSN--IFH-RVNSDFFQSMASLRVLKWSYSN-PLLFEI---SKVVSLQHLDLSHSRIESLP 76 (370)
Q Consensus 4 ~l~~l~~~~~l~~L~~L~l~~~--~i~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~---~~l~~L~~L~l~~~~l~~lp 76 (370)
+++.+...+.+++|+.|.++.| .+. .++.- ...+++|++|++++|+ ..+.++ ..+.+|..|++..|..+.+-
T Consensus 54 gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~ 132 (260)
T KOG2739|consen 54 GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLD 132 (260)
T ss_pred ceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccc
Confidence 4555666688999999999999 444 33333 4667999999999999 544444 45677889999999776543
Q ss_pred c----ccccCCcccEEeccCc
Q 017525 77 I----EFKCLVNLKCLNLEYT 93 (370)
Q Consensus 77 ~----~~~~l~~L~~L~l~~~ 93 (370)
. .+.-+++|++|+-.+.
T Consensus 133 dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 133 DYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cHHHHHHHHhhhhcccccccc
Confidence 2 3456777777776654
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.09 E-value=0.0025 Score=32.28 Aligned_cols=20 Identities=40% Similarity=0.665 Sum_probs=13.0
Q ss_pred cCCEEeccCCcccccCcccc
Q 017525 61 SLQHLDLSHSRIESLPIEFK 80 (370)
Q Consensus 61 ~L~~L~l~~~~l~~lp~~~~ 80 (370)
+|++|++++|+++.+|..++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 46677777777766666544
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.0011 Score=53.98 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=65.9
Q ss_pred cCcEEEEeccccc--ccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCC
Q 017525 230 SLKNVYISRSKFR--HATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSK 307 (370)
Q Consensus 230 ~L~~L~l~~~~l~--~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~ 307 (370)
.++.++-+++.+. ++.-+..++.++.|.+.+|..+.+-- +...-+..|+|+.|+|++|+.+++-...
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-----------L~~l~~~~~~L~~L~lsgC~rIT~~GL~ 170 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC-----------LERLGGLAPSLQDLDLSGCPRITDGGLA 170 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH-----------HHHhcccccchheeeccCCCeechhHHH
Confidence 4677777777443 45667889999999999999887763 2234457899999999999998875432
Q ss_pred -CccCCCcceEeecCCCCCCC
Q 017525 308 -ALPFPHLKEMSVDRCPLLKK 327 (370)
Q Consensus 308 -~~~~~~L~~L~l~~c~~L~~ 327 (370)
...+++|+.|.+++.+.+..
T Consensus 171 ~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 171 CLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HHHHhhhhHHHHhcCchhhhc
Confidence 34699999999988876554
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.34 E-value=0.01 Score=27.82 Aligned_cols=17 Identities=53% Similarity=0.833 Sum_probs=8.2
Q ss_pred ccCCEEeccCCcccccC
Q 017525 60 VSLQHLDLSHSRIESLP 76 (370)
Q Consensus 60 ~~L~~L~l~~~~l~~lp 76 (370)
++|+.|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35666677766666554
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.95 E-value=0.016 Score=29.20 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=13.3
Q ss_pred CCCEEecCCCcCCCCChH
Q 017525 16 RLRTLFLSSNIFHRVNSD 33 (370)
Q Consensus 16 ~L~~L~l~~~~i~~~~~~ 33 (370)
+|+.|++++|.++.+|+.
T Consensus 1 ~L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp TESEEEETSSEESEEGTT
T ss_pred CccEEECCCCcCEeCChh
Confidence 467788888877777765
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.97 E-value=0.11 Score=27.24 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=19.2
Q ss_pred CCCCCEEecCCCcCCCCChHHHh
Q 017525 14 CPRLRTLFLSSNIFHRVNSDFFQ 36 (370)
Q Consensus 14 l~~L~~L~l~~~~i~~~~~~~~~ 36 (370)
+++|+.|++++|+++.+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46889999999999999887554
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.97 E-value=0.11 Score=27.24 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=19.2
Q ss_pred CCCCCEEecCCCcCCCCChHHHh
Q 017525 14 CPRLRTLFLSSNIFHRVNSDFFQ 36 (370)
Q Consensus 14 l~~L~~L~l~~~~i~~~~~~~~~ 36 (370)
+++|+.|++++|+++.+|..+|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 46889999999999999887554
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.71 E-value=0.005 Score=51.43 Aligned_cols=82 Identities=21% Similarity=0.122 Sum_probs=44.3
Q ss_pred HhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcE
Q 017525 35 FQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILET 112 (370)
Q Consensus 35 ~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 112 (370)
+...+...+||++.+. .+...++-++.|..|+++.+.+..+|..++....+.+++...| ..+..|.. ++..+.++.
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-QKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-ccccCCcch
Confidence 3444555555555555 4444455555555555555555555555555555555555554 34445544 555555555
Q ss_pred EEcccc
Q 017525 113 LRMYEC 118 (370)
Q Consensus 113 L~l~~~ 118 (370)
++..++
T Consensus 116 ~e~k~~ 121 (326)
T KOG0473|consen 116 NEQKKT 121 (326)
T ss_pred hhhccC
Confidence 555555
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.31 E-value=0.24 Score=25.93 Aligned_cols=20 Identities=40% Similarity=0.645 Sum_probs=13.2
Q ss_pred cccCCEEeccCCcccccCcc
Q 017525 59 VVSLQHLDLSHSRIESLPIE 78 (370)
Q Consensus 59 l~~L~~L~l~~~~l~~lp~~ 78 (370)
+++|++|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35667777777777766654
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.31 E-value=0.24 Score=25.93 Aligned_cols=20 Identities=40% Similarity=0.645 Sum_probs=13.2
Q ss_pred cccCCEEeccCCcccccCcc
Q 017525 59 VVSLQHLDLSHSRIESLPIE 78 (370)
Q Consensus 59 l~~L~~L~l~~~~l~~lp~~ 78 (370)
+++|++|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35667777777777766654
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.86 E-value=0.021 Score=47.79 Aligned_cols=91 Identities=16% Similarity=0.036 Sum_probs=76.9
Q ss_pred ccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccccc
Q 017525 6 ENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKC 81 (370)
Q Consensus 6 ~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~ 81 (370)
.++|.. ..+...++||++.|.+..+... |.-+..|..++++-+. .+|..++....++.+++..|..+..|.+++.
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k 109 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKK 109 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence 445544 6788999999999987777666 6778888899999887 8899999999999999999999999999999
Q ss_pred CCcccEEeccCccccc
Q 017525 82 LVNLKCLNLEYTYGIS 97 (370)
Q Consensus 82 l~~L~~L~l~~~~~~~ 97 (370)
.++++.++...+.+..
T Consensus 110 ~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFFR 125 (326)
T ss_pred cCCcchhhhccCcchH
Confidence 9999999998875433
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=88.01 E-value=0.33 Score=25.45 Aligned_cols=17 Identities=24% Similarity=0.684 Sum_probs=11.8
Q ss_pred CCCcceEeecCCCCCCC
Q 017525 311 FPHLKEMSVDRCPLLKK 327 (370)
Q Consensus 311 ~~~L~~L~l~~c~~L~~ 327 (370)
+++|+.|++.+|+++++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 36677777777777664
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=83.74 E-value=0.23 Score=46.97 Aligned_cols=63 Identities=16% Similarity=0.102 Sum_probs=34.4
Q ss_pred cCCCcEEEEecCCcccceecc-CCCccccccccccccCcEEEEecc--cccccCcccC--CCCccEEeeccCcchH
Q 017525 195 LRHLQTLQLTYNDLDEIKIDN-GGEVKRVLEISGFHSLKNVYISRS--KFRHATWLFL--APNLKRVEIDNCQDMK 265 (370)
Q Consensus 195 l~~L~~L~l~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~--~l~~~~~l~~--l~~L~~L~L~~~~~~~ 265 (370)
.+.+..++|++|.+..+..-. .. ...|+|..|+|++| .+....++.+ ...|++|-+.||+..+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~ssls--------q~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLS--------QIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHH--------HhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 456666666666665553211 00 45667777777776 4444334433 3446667777666444
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.20 E-value=0.95 Score=23.78 Aligned_cols=18 Identities=39% Similarity=0.628 Sum_probs=14.4
Q ss_pred ccCCEEeccCCcccccCc
Q 017525 60 VSLQHLDLSHSRIESLPI 77 (370)
Q Consensus 60 ~~L~~L~l~~~~l~~lp~ 77 (370)
++|++|++++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467888888888888876
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.88 E-value=1.9 Score=22.68 Aligned_cols=16 Identities=38% Similarity=0.725 Sum_probs=9.6
Q ss_pred ccCCEEeccCCccccc
Q 017525 60 VSLQHLDLSHSRIESL 75 (370)
Q Consensus 60 ~~L~~L~l~~~~l~~l 75 (370)
++|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666543
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=76.98 E-value=1.4 Score=22.37 Aligned_cols=13 Identities=46% Similarity=0.692 Sum_probs=5.6
Q ss_pred ccCCEEeccCCcc
Q 017525 60 VSLQHLDLSHSRI 72 (370)
Q Consensus 60 ~~L~~L~l~~~~l 72 (370)
++|++|++++|.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3455555555544
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=69.50 E-value=0.048 Score=51.88 Aligned_cols=186 Identities=24% Similarity=0.243 Sum_probs=94.9
Q ss_pred CCEEecCCCcCCCCCh----HHHhcCCCCcEEEccCCC-c------chhhhhcc-ccCCEEeccCCccc-----ccCccc
Q 017525 17 LRTLFLSSNIFHRVNS----DFFQSMASLRVLKWSYSN-P------LLFEISKV-VSLQHLDLSHSRIE-----SLPIEF 79 (370)
Q Consensus 17 L~~L~l~~~~i~~~~~----~~~~~l~~L~~L~l~~~~-~------~~~~~~~l-~~L~~L~l~~~~l~-----~lp~~~ 79 (370)
+..|.+.+|.+..-.. ..+..++.|..|+++++. . +-..+... ..|++|++..|.++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7778888886653222 235567788888888887 1 11222222 55777888888765 334455
Q ss_pred ccCCcccEEeccCcccccc----cCcc---cccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCC-ccEEEE
Q 017525 80 KCLVNLKCLNLEYTYGISR----IPPK---VISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEH-LSVFTI 151 (370)
Q Consensus 80 ~~l~~L~~L~l~~~~~~~~----~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~l~l 151 (370)
...+.++.++++.|..... ++.. .+....++++|++.+| .++... .......+...+. +..+++
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~-------c~~l~~~l~~~~~~~~el~l 240 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSS-------CALLDEVLASGESLLRELDL 240 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHH-------HHHHHHHHhccchhhHHHHH
Confidence 5677888888888744311 1111 1224667888888888 554211 1122233444444 445666
Q ss_pred Eecchhhh--HhhhcCCCCCccccCcEEecCcCCCCccc---cccccccCCCcEEEEecCCccc
Q 017525 152 TLNNFHAF--QRLLGSCMPQYVSTPSLCLSHFNNSKSLG---VFSLASLRHLQTLQLTYNDLDE 210 (370)
Q Consensus 152 ~~~~~~~~--~~~~~~~~~~~l~L~~l~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~l~~ 210 (370)
..|...+. ..+........-.++.+.+..++-..... ...+..+++++.+.++.|.+.+
T Consensus 241 ~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 241 ASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 66654422 22221111110023444444333221111 0133345566666666665554
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.34 E-value=2.5 Score=40.28 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=52.9
Q ss_pred cccccCcEEEEecccccccCcc----cCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccccc
Q 017525 226 SGFHSLKNVYISRSKFRHATWL----FLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNL 301 (370)
Q Consensus 226 ~~~~~L~~L~l~~~~l~~~~~l----~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l 301 (370)
..++.+..++|++|++..++.+ ...|+|+.|+|++|........ .-.--....|++|-+.+++-.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-----------el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-----------ELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-----------hhhhhcCCCHHHeeecCCccc
Confidence 5789999999999977666543 3489999999999832111100 001123455788888887654
Q ss_pred ccccCC-------CccCCCcceEeec
Q 017525 302 KTVHSK-------ALPFPHLKEMSVD 320 (370)
Q Consensus 302 ~~i~~~-------~~~~~~L~~L~l~ 320 (370)
+..... ...||+|..|+=.
T Consensus 284 ~tf~~~s~yv~~i~~~FPKL~~LDG~ 309 (585)
T KOG3763|consen 284 TTFSDRSEYVSAIRELFPKLLRLDGV 309 (585)
T ss_pred cchhhhHHHHHHHHHhcchheeecCc
Confidence 443221 1249998877643
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.87 E-value=7.1 Score=20.75 Aligned_cols=14 Identities=43% Similarity=0.667 Sum_probs=8.8
Q ss_pred ccCCEEeccCCccc
Q 017525 60 VSLQHLDLSHSRIE 73 (370)
Q Consensus 60 ~~L~~L~l~~~~l~ 73 (370)
++|++|+|++|.++
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45666677666654
No 90
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=22.92 E-value=5.1 Score=38.38 Aligned_cols=109 Identities=26% Similarity=0.248 Sum_probs=71.4
Q ss_pred CCCCCCCEEecCCCcCCC----CChHHHh----cCCCCcEEEccCCC-------cchhhhhcccc-CCEEeccCCccc--
Q 017525 12 PVCPRLRTLFLSSNIFHR----VNSDFFQ----SMASLRVLKWSYSN-------PLLFEISKVVS-LQHLDLSHSRIE-- 73 (370)
Q Consensus 12 ~~l~~L~~L~l~~~~i~~----~~~~~~~----~l~~L~~L~l~~~~-------~~~~~~~~l~~-L~~L~l~~~~l~-- 73 (370)
.....++.++++.|.+.. ..+..+. ...++++|.+++|. .+-..+...+. ++.|++..|.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 447888889998886531 1112233 46789999999987 12223344455 777889888764
Q ss_pred ---ccCcccccC-CcccEEeccCcccccc----cCcccccCCCCCcEEEccccCCCc
Q 017525 74 ---SLPIEFKCL-VNLKCLNLEYTYGISR----IPPKVISNLKILETLRMYECAALP 122 (370)
Q Consensus 74 ---~lp~~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~ 122 (370)
.+.+.+..+ ..++++++.+|..... ++. .+..++.++++.+..| .+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~-~l~~~~~l~~l~l~~n-~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE-VLVSCRQLEELSLSNN-PLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH-HHhhhHHHHHhhcccC-ccc
Confidence 344455566 7889999999855432 222 3567778999999988 554
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.51 E-value=73 Score=37.32 Aligned_cols=30 Identities=13% Similarity=0.177 Sum_probs=24.0
Q ss_pred ecCCCcCCCCChHHHhcCCCCcEEEccCCC
Q 017525 21 FLSSNIFHRVNSDFFQSMASLRVLKWSYSN 50 (370)
Q Consensus 21 ~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~ 50 (370)
+|++|+|+.+++..|..+++|+.|+|++|+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNP 30 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNP 30 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCc
Confidence 567788888888778888888888888876
Done!